Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62811768
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 736185 characters in sequence are not A, C, G, or T
File 24 of 211
Found at i:6486398 original size:19 final size:19
Alignment explanation
Indices: 6486374--6486436 Score: 83
Period size: 19 Copynumber: 3.3 Consensus size: 19
6486364 AAAAATTTAC
6486374 AAATATAATTCTATTTATT
1 AAATATAATTCTATTTATT
* *
6486393 AAATATTATT-AATATTATT
1 AAATATAATTCTAT-TTATT
*
6486412 AAAAATAATTCTATTTATT
1 AAATATAATTCTATTTATT
6486431 AAATAT
1 AAATAT
6486437 TATTTTTATT
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
18 2 0.06
19 32 0.89
20 2 0.06
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.49
Consensus pattern (19 bp):
AAATATAATTCTATTTATT
Found at i:6486455 original size:38 final size:38
Alignment explanation
Indices: 6486378--6486454 Score: 118
Period size: 38 Copynumber: 2.0 Consensus size: 38
6486368 ATTTACAAAT
*
6486378 ATAATTCTATTTATTAAATATTATTAATATTATTAAAA
1 ATAATTCTATTTATTAAATATTATTAATATTAATAAAA
**
6486416 ATAATTCTATTTATTAAATATTATTTTTATTTAATAAAA
1 ATAATTCTATTTATTAAATATTATTAATA-TTAATAAAA
6486455 TGTTGTTAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
38 27 0.77
39 8 0.23
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (38 bp):
ATAATTCTATTTATTAAATATTATTAATATTAATAAAA
Found at i:6487627 original size:14 final size:14
Alignment explanation
Indices: 6487618--6487648 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
6487608 TTTTTTGTTC
6487618 TTTC-TCTTTTCTT
1 TTTCTTCTTTTCTT
6487631 TTTCTTCTTTTCTT
1 TTTCTTCTTTTCTT
6487645 TTTC
1 TTTC
6487649 GCCATATAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.24
14 13 0.76
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (14 bp):
TTTCTTCTTTTCTT
Found at i:6487648 original size:20 final size:20
Alignment explanation
Indices: 6487609--6487646 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
6487599 TGTTCCCTTT
*
6487609 TTTTTGTTCTTTCTCTTTTC
1 TTTTTCTTCTTTCTCTTTTC
6487629 TTTTTCTTCTTT-TCTTTT
1 TTTTTCTTCTTTCTCTTTT
6487647 TCGCCATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.00, C:0.18, G:0.03, T:0.79
Consensus pattern (20 bp):
TTTTTCTTCTTTCTCTTTTC
Found at i:6500390 original size:10 final size:9
Alignment explanation
Indices: 6500378--6500444 Score: 53
Period size: 10 Copynumber: 7.0 Consensus size: 9
6500368 AAATAAATCA
6500378 AAAAAATAT
1 AAAAAATAT
*
6500387 AAAAATTAT
1 AAAAAATAT
*
6500396 TAAAAATAT
1 AAAAAATAT
6500405 CAAAAAATTAT
1 -AAAAAA-TAT
* *
6500416 TAAAATTAAT
1 AAAAAAT-AT
*
6500426 AAAAACTTAT
1 AAAAA-ATAT
6500436 AAAAAATAT
1 AAAAAATAT
6500445 TTAAAATTTT
Statistics
Matches: 46, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
9 19 0.41
10 22 0.48
11 5 0.11
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (9 bp):
AAAAAATAT
Found at i:6500406 original size:29 final size:29
Alignment explanation
Indices: 6500374--6500462 Score: 90
Period size: 29 Copynumber: 3.0 Consensus size: 29
6500364 ATGAAAATAA
*
6500374 ATCAAAAAAATATAAAAATTATTAAAAAT
1 ATCAAAAAAATATAAAAATTAATAAAAAT
* *
6500403 ATCAAAAAATTATTAAAATTAATAAAAACTT
1 ATCAAAAAAATATAAAAATTAATAAAAA--T
* * *
6500434 AT-AAAAAATATTTAAAATTTTATAAAAAT
1 ATCAAAAAA-ATATAAAAATTAATAAAAAT
6500463 TCTTAAAAAC
Statistics
Matches: 49, Mismatches: 8, Indels: 6
0.78 0.13 0.10
Matches are distributed among these distances:
29 26 0.53
30 6 0.12
31 17 0.35
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (29 bp):
ATCAAAAAAATATAAAAATTAATAAAAAT
Found at i:6500450 original size:20 final size:20
Alignment explanation
Indices: 6500378--6500476 Score: 76
Period size: 20 Copynumber: 5.0 Consensus size: 20
6500368 AAATAAATCA
6500378 AAAAAATA-T-AAAAATTAT
1 AAAAAATATTAAAAAATTAT
* *
6500396 TAAAAATATCAAAAAATTAT
1 AAAAAATATTAAAAAATTAT
* * * *
6500416 TAAAATTAATAAAAACTTAT
1 AAAAAATATTAAAAAATTAT
**
6500436 AAAAAATATTTAAAATTTTAT
1 AAAAAATA-TTAAAAAATTAT
* * *
6500457 AAAAATTCTTAAAAACTTAT
1 AAAAAATATTAAAAAATTAT
6500477 TTAAAATTTA
Statistics
Matches: 63, Mismatches: 15, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
18 7 0.11
20 41 0.65
21 15 0.24
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.34
Consensus pattern (20 bp):
AAAAAATATTAAAAAATTAT
Found at i:6500483 original size:41 final size:40
Alignment explanation
Indices: 6500385--6500483 Score: 110
Period size: 41 Copynumber: 2.5 Consensus size: 40
6500375 TCAAAAAAAT
*
6500385 ATAAAAA-TTATTAAAAATATCAAAAAATTATTAAAATTA
1 ATAAAAACTTATTAAAAATATCAAAAAATTATAAAAATTA
* * ** *
6500424 ATAAAAACTTATAAAAAATATTTAAAATTTTATAAAAATTC
1 ATAAAAACTTATTAAAAATA-TCAAAAAATTATAAAAATTA
* *
6500465 TTAAAAACTTATTTAAAAT
1 ATAAAAACTTATTAAAAAT
6500484 TTAATTTAAA
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
39 7 0.14
40 11 0.22
41 31 0.63
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (40 bp):
ATAAAAACTTATTAAAAATATCAAAAAATTATAAAAATTA
Found at i:6502279 original size:14 final size:14
Alignment explanation
Indices: 6502249--6502294 Score: 53
Period size: 13 Copynumber: 3.5 Consensus size: 14
6502239 AAATATTAAA
6502249 ATTTTT-TATTT-T
1 ATTTTTATATTTAT
6502261 ATTTTTATATTTAT
1 ATTTTTATATTTAT
*
6502275 ATTTTTA-AATTAT
1 ATTTTTATATTTAT
*
6502288 AATTTTA
1 ATTTTTA
6502295 AGAAGTTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
12 6 0.20
13 16 0.53
14 8 0.27
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (14 bp):
ATTTTTATATTTAT
Found at i:6503864 original size:6 final size:6
Alignment explanation
Indices: 6503853--6503879 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
6503843 CATAAATAGC
6503853 AAAATA AAAATA AAAATA AAAATA AAA
1 AAAATA AAAATA AAAATA AAAATA AAA
6503880 GACAGGAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:6506167 original size:51 final size:51
Alignment explanation
Indices: 6506062--6506169 Score: 117
Period size: 51 Copynumber: 2.1 Consensus size: 51
6506052 CTGTGTAAGT
* * * * * *
6506062 ATTGACAGAATGTATAAATGTTATGTGCTAAATTTGTTGAACCATGACTAA
1 ATTGACAAAATGTATAAATGTTAAGAGCTAAATTTGTTAAACCAAGACCAA
* * ** *
6506113 ATTGACAAAATGTGTAAATTTTAAGAGCTAAATTTGTTAAATTAAGACCGA
1 ATTGACAAAATGTATAAATGTTAAGAGCTAAATTTGTTAAACCAAGACCAA
6506164 ATTGAC
1 ATTGAC
6506170 TAGAAAATAT
Statistics
Matches: 46, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
51 46 1.00
ACGTcount: A:0.40, C:0.09, G:0.17, T:0.34
Consensus pattern (51 bp):
ATTGACAAAATGTATAAATGTTAAGAGCTAAATTTGTTAAACCAAGACCAA
Found at i:6507922 original size:114 final size:113
Alignment explanation
Indices: 6507634--6508311 Score: 862
Period size: 114 Copynumber: 6.0 Consensus size: 113
6507624 AAAATAAGCA
* * * *
6507634 TTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAGACTTCAACCCAACAACGCTGTTTTCTGAGCTGA
1 TTAGCGGCGTTTTTGGGAAAGCGCCGCAAAATACTTCAGCCCAACGACGCCGTTTTCTGAGCTGA
** *
6507699 GAAGGATTTAGTGGCAATTTTACGAAAGCGCCGCTAATGCTCA-GTCT
66 GAAGGATTTAGTGGCGTTTTTATGAAAGCGCCGCTAATGCTCAGGTCT
* * * * *
6507746 TTAGTGGCATTTTTCGGAAAGCGCCGCAAAAACACTTCAGTCCAACGACGCCGTTTTCTGAGCTT
1 TTAGCGGCGTTTTTGGGAAAGCGCCGC-AAAATACTTCAGCCCAACGACGCCGTTTTCTGAGC-T
** * *
6507811 TCG-GGGATTTAGTGGCGTTTTTATGAAAGCGCCGCTAATGCTCAGGTCC
64 GAGAAGGATTTAGTGGCGTTTTTATGAAAGCGCCGCTAATGCTCAGGTCT
*
6507860 TTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAGTTCTTCAGCCCAACGACGCCGTTTTCTGAGCTT
1 TTAGCGGCGTTTTTGGGAAAGCGCCGCAAAA-TACTTCAGCCCAACGACGCCGTTTTCTGAGC-T
** * * * *
6507925 TCG-GGGATTTAGTGGCGTTTTTATTAAAGCGCCGCTAATACTCAGGGCT
64 GAGAAGGATTTAGTGGCGTTTTTATGAAAGCGCCGCTAATGCTCAGGTCT
* * * *
6507974 TTAGTGGCGTTTGTGGGAAAGCGCCACAACAATACTTCATCCCAACGACGCCGTTTTCTGAGCTG
1 TTAGCGGCGTTTTTGGGAAAGCGCCGCAA-AATACTTCAGCCCAACGACGCCGTTTTCTGAGCTG
* * * *
6508039 AGAATGATTTAGTGGCGTTTTTATGTAGGCGCCGCTAAAGCTCAGGTCT
65 AGAAGGATTTAGTGGCGTTTTTATGAAAGCGCCGCTAATGCTCAGGTCT
*
6508088 TTAGCGGCGTTTTTGGGAAAGCGCCGCAAGAATACTTCAGCCCAACGACGCCGTTTTTTGAGCTG
1 TTAGCGGCGTTTTTGGGAAAGCGCCGCAA-AATACTTCAGCCCAACGACGCCGTTTTCTGAGCTG
* * * * *
6508153 AGAAGGATTTAGTGGCGTTTTTATGTAAGCGCTGCTAATGTTCAAGTTT
65 AGAAGGATTTAGTGGCGTTTTTATGAAAGCGCCGCTAATGCTCAGGTCT
*
6508202 TTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAATACTTCAGCCCAACGACGCTGTTTTCTGAGCTT
1 TTAGCGGCGTTTTTGGGAAAGCGCCGC-AAAATACTTCAGCCCAACGACGCCGTTTTCTGAGC-T
** * * *
6508267 TCG-GGGATTTAGTGGCGTTTTTATG-AAGCGCCACTAATACTCAGG
64 GAGAAGGATTTAGTGGCGTTTTTATGAAAGCGCCGCTAATGCTCAGG
6508312 GATGTAAAAT
Statistics
Matches: 495, Mismatches: 63, Indels: 15
0.86 0.11 0.03
Matches are distributed among these distances:
112 24 0.05
113 88 0.18
114 377 0.76
115 6 0.01
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (113 bp):
TTAGCGGCGTTTTTGGGAAAGCGCCGCAAAATACTTCAGCCCAACGACGCCGTTTTCTGAGCTGA
GAAGGATTTAGTGGCGTTTTTATGAAAGCGCCGCTAATGCTCAGGTCT
Found at i:6508163 original size:342 final size:339
Alignment explanation
Indices: 6507634--6508312 Score: 1000
Period size: 342 Copynumber: 2.0 Consensus size: 339
6507624 AAAATAAGCA
* * *
6507634 TTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAGACTTCAACCCAACAACGCTGTTTTCTGAGCTGA
1 TTAGCGGCGTTTGTGGGAAAGCGCCACAAAAGACTTCAACCCAACAACGCCGTTTTCTGAGCTGA
* *
6507699 GAAGGATTTAGTGGCAATTTTACGAAAGCGCCGCTAATGCTCAGTCTTTAGTGGCATTTTTCGGA
66 GAAGGATTTAGTGGCAATTTTACGAAAGCGCCGCTAAAGCTCAGTCTTTAGCGGCATTTTTCGGA
* ** *
6507764 AAGCGCCGCAAAAACACTTCAGTCCAACGACGCCGTTTTCTGAGCTTTCGGGGATTTAGTGGCGT
131 AAGCGCCGCAAAAACACTTCAGCCCAACGACGCCGTTTTCTGAGCTTGAGAGGATTTAGTGGCGT
* * *
6507829 TTTTATGAAAGCGCCGCTAATGCTCAGGTCCTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAGTT
196 TTTTATGAAAGCGCCGCTAATGCTCAAGTCCTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAATA
*
6507894 CTTCAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGATTTAGTGGCGTTTTTATTAAAGCGCCG
261 CTTCAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGATTTAGTGGCGTTTTTA-TAAAGCGCCA
6507959 CTAATACTCAGGGCT
325 CTAATACTCAGGGCT
* * * *
6507974 TTAGTGGCGTTTGTGGGAAAGCGCCACAACAATACTTCATCCCAACGACGCCGTTTTCTGAGCTG
1 TTAGCGGCGTTTGTGGGAAAGCGCCACAA-AAGACTTCAACCCAACAACGCCGTTTTCTGAGCTG
* ** * * * * *
6508039 AGAATGATTTAGTGGCGTTTTTATGTAGGCGCCGCTAAAGCTCAGGTCTTTAGCGGCGTTTTTGG
65 AGAAGGATTTAGTGGCAATTTTACGAAAGCGCCGCTAAAGCTCA-GTCTTTAGCGGCATTTTTCG
* * *
6508104 GAAAGCGCCGCAAGAATACTTCAGCCCAACGACGCCGTTTTTTGAGC-TGAGAAGGATTTAGTGG
129 GAAAGCGCCGCAAAAACACTTCAGCCCAACGACGCCGTTTTCTGAGCTTGAG-AGGATTTAGTGG
* * * **
6508168 CGTTTTTATGTAAGCGCTGCTAATGTTCAAGTTTTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAA
193 CGTTTTTATGAAAGCGCCGCTAATGCTCAAGTCCTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAA
* *
6508233 ATACTTCAGCCCAACGACGCTGTTTTCTGAGCTTTCGGGGATTTAGTGGCGTTTTTATGAAGCGC
258 ATACTTCAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGATTTAGTGGCGTTTTTATAAAGCGC
6508298 CACTAATACTCAGGG
323 CACTAATACTCAGGG
6508313 ATGTAAAATA
Statistics
Matches: 301, Mismatches: 35, Indels: 5
0.88 0.10 0.01
Matches are distributed among these distances:
340 26 0.09
341 91 0.30
342 184 0.61
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (339 bp):
TTAGCGGCGTTTGTGGGAAAGCGCCACAAAAGACTTCAACCCAACAACGCCGTTTTCTGAGCTGA
GAAGGATTTAGTGGCAATTTTACGAAAGCGCCGCTAAAGCTCAGTCTTTAGCGGCATTTTTCGGA
AAGCGCCGCAAAAACACTTCAGCCCAACGACGCCGTTTTCTGAGCTTGAGAGGATTTAGTGGCGT
TTTTATGAAAGCGCCGCTAATGCTCAAGTCCTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAATA
CTTCAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGATTTAGTGGCGTTTTTATAAAGCGCCAC
TAATACTCAGGGCT
Found at i:6508578 original size:14 final size:15
Alignment explanation
Indices: 6508545--6508578 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
6508535 TAAGTTTTAT
6508545 AGATTATGGAATTAG
1 AGATTATGGAATTAG
6508560 AGATTATGG-ATTAG
1 AGATTATGGAATTAG
*
6508574 GGATT
1 AGATT
6508579 CTGGTTTAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.35, C:0.00, G:0.29, T:0.35
Consensus pattern (15 bp):
AGATTATGGAATTAG
Found at i:6508647 original size:14 final size:13
Alignment explanation
Indices: 6508612--6508678 Score: 82
Period size: 14 Copynumber: 5.1 Consensus size: 13
6508602 TAAGGTTTAT
* *
6508612 GGGTTAAGGGTTC
1 GGGTTAGGGGTTA
*
6508625 GAGTTAGGGGTTA
1 GGGTTAGGGGTTA
6508638 GGGATTAGGGGTTAA
1 GGG-TTAGGGGTT-A
6508653 GGGTTAGGGGTTA
1 GGGTTAGGGGTTA
6508666 -GGTTAGGGGTTA
1 GGGTTAGGGGTTA
6508678 G
1 G
6508679 ATGTTAAGAG
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
12 12 0.26
13 13 0.28
14 18 0.38
15 4 0.09
ACGTcount: A:0.19, C:0.01, G:0.49, T:0.30
Consensus pattern (13 bp):
GGGTTAGGGGTTA
Found at i:6508678 original size:7 final size:7
Alignment explanation
Indices: 6508627--6508678 Score: 72
Period size: 7 Copynumber: 7.7 Consensus size: 7
6508617 AAGGGTTCGA
6508627 GTTAGGG
1 GTTAGGG
6508634 GTTAGGG
1 GTTAGGG
*
6508641 ATTAGGG
1 GTTAGGG
*
6508648 GTTAAGG
1 GTTAGGG
6508655 GTTAGGG
1 GTTAGGG
6508662 GTTA--G
1 GTTAGGG
6508667 GTTAGGG
1 GTTAGGG
6508674 GTTAG
1 GTTAG
6508679 ATGTTAAGAG
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
5 5 0.13
7 34 0.87
ACGTcount: A:0.19, C:0.00, G:0.50, T:0.31
Consensus pattern (7 bp):
GTTAGGG
Found at i:6508684 original size:19 final size:20
Alignment explanation
Indices: 6508627--6508694 Score: 59
Period size: 21 Copynumber: 3.4 Consensus size: 20
6508617 AAGGGTTCGA
*
6508627 GTTAGGGGTTAG-GGATTAGGG
1 GTTAGGGGTTAGAGG-TTA-AG
* *
6508648 GTTAAGGGTTAGGGGTT-AG
1 GTTAGGGGTTAGAGGTTAAG
*
6508667 GTTAGGGGTTAGATGTTAAG
1 GTTAGGGGTTAGAGGTTAAG
6508687 AGTTAGGG
1 -GTTAGGG
6508695 ATTTAGGGTT
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
19 15 0.38
20 2 0.05
21 20 0.51
22 2 0.05
ACGTcount: A:0.22, C:0.00, G:0.47, T:0.31
Consensus pattern (20 bp):
GTTAGGGGTTAGAGGTTAAG
Found at i:6508821 original size:35 final size:35
Alignment explanation
Indices: 6508772--6508843 Score: 108
Period size: 35 Copynumber: 2.1 Consensus size: 35
6508762 ATATATTAAA
*
6508772 TAAGGTTTAGGGGTTAGGGGTTAAAGGTCAGGGGT
1 TAAGGTTTAAGGGTTAGGGGTTAAAGGTCAGGGGT
** *
6508807 TAAGGTTTAAGGGTTAGGGGTTAGGGGTTAGGGGT
1 TAAGGTTTAAGGGTTAGGGGTTAAAGGTCAGGGGT
6508842 TA
1 TA
6508844 GGGATTGGGT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.22, C:0.01, G:0.46, T:0.31
Consensus pattern (35 bp):
TAAGGTTTAAGGGTTAGGGGTTAAAGGTCAGGGGT
Found at i:6508824 original size:131 final size:130
Alignment explanation
Indices: 6508653--6508925 Score: 338
Period size: 131 Copynumber: 2.1 Consensus size: 130
6508643 TAGGGGTTAA
* * * * * *
6508653 GGGTTAGGGGTT-AGGTTAGGGGTTAGATGTTAAGAGTTAGGGATTTAGGGTTTATAAATTTGAT
1 GGGTTAGGGGTTAAGGTCAGGGGTTAGATGTTAAGAGTTAGGG-GTTAGGGGTTAGAAATTAGAG
*
6508717 ATTAGGTTA-GAGTTTAGGGTTTAGATTAATTAGTGTGTTTTAA-GTATATATTAAATAAGGTTT
65 ATTAGGTTATG-GTTTAGGGTTTAGATTAATTAGTGTGTTTTAATGTATATATTAAATAAAGTTT
6508780 AG
129 AG
* * *** *
6508782 GGGTTAGGGGTTAAAGGTCAGGGGTTA-AGGTTTAAGGGTTAGGGGTTAGGGGTTAGGGGTTAGG
1 GGGTTAGGGGTT-AAGGTCAGGGGTTAGATG-TTAAGAGTTAGGGGTTAGGGGTTAGAAATTAGA
* * *
6508846 GATTGGGTTATGGTTTAGGGTTTAGATTAATTAGTGTTTTTTAATTTATATATTAAATAAAGTTT
64 GATTAGGTTATGGTTTAGGGTTTAGATTAATTAGTGTGTTTTAATGTATATATTAAATAAAGTTT
6508911 AG
129 AG
6508913 GGGTTAGGGGTTA
1 GGGTTAGGGGTTA
6508926 GGGATTATGG
Statistics
Matches: 123, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
129 12 0.10
130 54 0.44
131 57 0.46
ACGTcount: A:0.26, C:0.00, G:0.34, T:0.40
Consensus pattern (130 bp):
GGGTTAGGGGTTAAGGTCAGGGGTTAGATGTTAAGAGTTAGGGGTTAGGGGTTAGAAATTAGAGA
TTAGGTTATGGTTTAGGGTTTAGATTAATTAGTGTGTTTTAATGTATATATTAAATAAAGTTTAG
Found at i:6508825 original size:6 final size:7
Alignment explanation
Indices: 6508778--6508846 Score: 84
Period size: 7 Copynumber: 9.9 Consensus size: 7
6508768 TAAATAAGGT
6508778 TTAGGGG
1 TTAGGGG
6508785 TTAGGGG
1 TTAGGGG
**
6508792 TTAAAGG
1 TTAGGGG
*
6508799 TCAGGGG
1 TTAGGGG
* *
6508806 TTAAGGT
1 TTAGGGG
*
6508813 TTAAGGG
1 TTAGGGG
6508820 TTAGGGG
1 TTAGGGG
6508827 TTAGGGG
1 TTAGGGG
6508834 TTAGGGG
1 TTAGGGG
6508841 TTAGGG
1 TTAGGG
6508847 ATTGGGTTAT
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
7 52 1.00
ACGTcount: A:0.20, C:0.01, G:0.49, T:0.29
Consensus pattern (7 bp):
TTAGGGG
Found at i:6508841 original size:21 final size:21
Alignment explanation
Indices: 6508772--6508846 Score: 96
Period size: 21 Copynumber: 3.6 Consensus size: 21
6508762 ATATATTAAA
*
6508772 TAAGGTTTAGGGGTTAGGGGT
1 TAAGGGTTAGGGGTTAGGGGT
* * * *
6508793 TAAAGGTCAGGGGTTAAGGTT
1 TAAGGGTTAGGGGTTAGGGGT
6508814 TAAGGGTTAGGGGTTAGGGGT
1 TAAGGGTTAGGGGTTAGGGGT
*
6508835 TAGGGGTTAGGG
1 TAAGGGTTAGGG
6508847 ATTGGGTTAT
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 44 1.00
ACGTcount: A:0.21, C:0.01, G:0.48, T:0.29
Consensus pattern (21 bp):
TAAGGGTTAGGGGTTAGGGGT
Found at i:6508975 original size:96 final size:96
Alignment explanation
Indices: 6508811--6509001 Score: 249
Period size: 96 Copynumber: 2.0 Consensus size: 96
6508801 AGGGGTTAAG
* * * * * *
6508811 GTTTAAGGGTTAGGGGTTAGGGGTTAGGGGTTAGGGATTGGGTTATGGTTTAGGGTTTAGATTAA
1 GTTTAAGGGTTAGGGGTTAGGGATTAGGGATTAGGGATCGGGTTAGGGTTTAAGATTTAGATTAA
** *
6508876 TTAGTGTTTTTTAATTTATATATTAAATAAA
66 TTAGTACTTTTTAATTTACATATTAAATAAA
* * * *
6508907 GTTTAGGGGTTAGGGGTTAGGGATTATGGATT-TGGAGTCGGGTTAGGGTTTAAGATTTGGATTA
1 GTTTAAGGGTTAGGGGTTAGGGATTAGGGATTAGGGA-TCGGGTTAGGGTTTAAGATTTAGATTA
6508971 ATTAGTACTTTTTAATTTACATATTAAATAA
65 ATTAGTACTTTTTAATTTACATATTAAATAA
6509002 GTTCTTTATA
Statistics
Matches: 81, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
95 3 0.04
96 78 0.96
ACGTcount: A:0.27, C:0.02, G:0.30, T:0.42
Consensus pattern (96 bp):
GTTTAAGGGTTAGGGGTTAGGGATTAGGGATTAGGGATCGGGTTAGGGTTTAAGATTTAGATTAA
TTAGTACTTTTTAATTTACATATTAAATAAA
Found at i:6509103 original size:21 final size:21
Alignment explanation
Indices: 6509050--6509103 Score: 51
Period size: 21 Copynumber: 2.6 Consensus size: 21
6509040 TAAAGATTAT
6509050 TAATTTAAAA-TTGATATGCAA
1 TAATTTAAAATTTGATAT-CAA
*
6509071 T-ATATAATAATTTGAATAT-AA
1 TAATTTAA-AATTTG-ATATCAA
6509092 TAATTTAAAATT
1 TAATTTAAAATT
6509104 GTAAAAATTG
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
20 5 0.19
21 10 0.37
22 8 0.30
23 4 0.15
ACGTcount: A:0.50, C:0.02, G:0.06, T:0.43
Consensus pattern (21 bp):
TAATTTAAAATTTGATATCAA
Found at i:6509118 original size:8 final size:8
Alignment explanation
Indices: 6509093--6509126 Score: 52
Period size: 8 Copynumber: 4.2 Consensus size: 8
6509083 TGAATATAAT
6509093 AATT-TAA
1 AATTGTAA
6509100 AATTGTAAA
1 AATTGT-AA
6509109 AATTGTAA
1 AATTGTAA
6509117 AATTGTAA
1 AATTGTAA
6509125 AA
1 AA
6509127 AAATTGTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
7 4 0.16
8 13 0.52
9 8 0.32
ACGTcount: A:0.56, C:0.00, G:0.09, T:0.35
Consensus pattern (8 bp):
AATTGTAA
Found at i:6509140 original size:9 final size:9
Alignment explanation
Indices: 6509098--6509127 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
6509088 ATAATAATTT
6509098 AAAATTGTA
1 AAAATTGTA
6509107 AAAATTGT-
1 AAAATTGTA
6509115 AAAATTGTA
1 AAAATTGTA
6509124 AAAA
1 AAAA
6509128 AATTGTCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.40
9 12 0.60
ACGTcount: A:0.60, C:0.00, G:0.10, T:0.30
Consensus pattern (9 bp):
AAAATTGTA
Found at i:6509146 original size:20 final size:19
Alignment explanation
Indices: 6509106--6509148 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
6509096 TTAAAATTGT
**
6509106 AAAAATTGTAAAATTGTAA
1 AAAAATTGTAAAATTACAA
6509125 AAAAATTGTCAAAATTACAA
1 AAAAATTGT-AAAATTACAA
6509145 AAAA
1 AAAA
6509149 TAAAATTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.63, C:0.05, G:0.07, T:0.26
Consensus pattern (19 bp):
AAAAATTGTAAAATTACAA
Found at i:6509149 original size:19 final size:19
Alignment explanation
Indices: 6509093--6509140 Score: 66
Period size: 17 Copynumber: 2.6 Consensus size: 19
6509083 TGAATATAAT
6509093 AATT-TAAAATTGT--AAA
1 AATTGTAAAATTGTAAAAA
6509109 AATTGTAAAATTGTAAAAA
1 AATTGTAAAATTGTAAAAA
6509128 AATTGTCAAAATT
1 AATTGT-AAAATT
6509141 ACAAAAAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.14
17 9 0.32
19 9 0.32
20 6 0.21
ACGTcount: A:0.54, C:0.02, G:0.08, T:0.35
Consensus pattern (19 bp):
AATTGTAAAATTGTAAAAA
Found at i:6509191 original size:18 final size:18
Alignment explanation
Indices: 6509143--6509184 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
6509133 TCAAAATTAC
*
6509143 AAAAAATAAAATTA-AAAT
1 AAAAAATAAAA-AAGAAAT
6509161 AAAAAATAAAAAAGAAAT
1 AAAAAATAAAAAAGAAAT
6509179 AAAAAA
1 AAAAAA
6509185 ACTAAAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 1 0.05
18 21 0.95
ACGTcount: A:0.83, C:0.00, G:0.02, T:0.14
Consensus pattern (18 bp):
AAAAAATAAAAAAGAAAT
Found at i:6509240 original size:47 final size:47
Alignment explanation
Indices: 6509180--6509276 Score: 131
Period size: 47 Copynumber: 2.1 Consensus size: 47
6509170 AAAAGAAATA
** * *
6509180 AAAAAACTAAAATTTTTATTTTTACCTAATTTTTATAAATATTACTT
1 AAAAAACTAAAATTGATAATTTTACCTAATTTTTATAAATATTACCT
* * *
6509227 AAAAAACTGAAATTGATAATTTTATCTAATTTTTTTAAATATTACCT
1 AAAAAACTAAAATTGATAATTTTACCTAATTTTTATAAATATTACCT
6509274 AAA
1 AAA
6509277 TTAACAAAAC
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
47 43 1.00
ACGTcount: A:0.44, C:0.08, G:0.02, T:0.45
Consensus pattern (47 bp):
AAAAAACTAAAATTGATAATTTTACCTAATTTTTATAAATATTACCT
Found at i:6511207 original size:7 final size:7
Alignment explanation
Indices: 6511183--6511234 Score: 59
Period size: 7 Copynumber: 7.3 Consensus size: 7
6511173 TATTTCTTTA
6511183 TTTTCTG
1 TTTTCTG
*
6511190 TTTTCCG
1 TTTTCTG
*
6511197 TTTTCTA
1 TTTTCTG
*
6511204 TTTTTTG
1 TTTTCTG
6511211 TTTTCTG
1 TTTTCTG
*
6511218 TTTTGCTA
1 TTTT-CTG
6511226 TTTTCTG
1 TTTTCTG
6511233 TT
1 TT
6511235 GAATGAAGTG
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
7 30 0.83
8 6 0.17
ACGTcount: A:0.04, C:0.13, G:0.12, T:0.71
Consensus pattern (7 bp):
TTTTCTG
Found at i:6511207 original size:21 final size:22
Alignment explanation
Indices: 6511181--6511234 Score: 83
Period size: 21 Copynumber: 2.5 Consensus size: 22
6511171 TATATTTCTT
6511181 TATTTTCTGTTTTCCGTTTT-C
1 TATTTTCTGTTTTCCGTTTTGC
* *
6511202 TATTTTTTGTTTTCTGTTTTGC
1 TATTTTCTGTTTTCCGTTTTGC
6511224 TATTTTCTGTT
1 TATTTTCTGTT
6511235 GAATGAAGTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
21 18 0.62
22 11 0.38
ACGTcount: A:0.06, C:0.13, G:0.11, T:0.70
Consensus pattern (22 bp):
TATTTTCTGTTTTCCGTTTTGC
Found at i:6511801 original size:45 final size:43
Alignment explanation
Indices: 6511717--6511801 Score: 100
Period size: 45 Copynumber: 1.9 Consensus size: 43
6511707 AAAATTTATA
* * *
6511717 TCTTACATTACATAAATAAATATTTTTAAGTATATTTTACATG
1 TCTTACATTACATAAATAAATATTTTTAACTAAAATTTACATG
*
6511760 TCTTACATTA-ATAAATAAAACATATTTTTTACTAAAATTTAC
1 TCTTACATTACATAAAT--AA-ATATTTTTAACTAAAATTTAC
6511802 TCTTAATATA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
42 6 0.17
43 10 0.29
44 2 0.06
45 17 0.49
ACGTcount: A:0.42, C:0.11, G:0.02, T:0.45
Consensus pattern (43 bp):
TCTTACATTACATAAATAAATATTTTTAACTAAAATTTACATG
Found at i:6511881 original size:53 final size:53
Alignment explanation
Indices: 6511823--6511972 Score: 237
Period size: 53 Copynumber: 2.8 Consensus size: 53
6511813 GACTTGAATA
**
6511823 TATTACTTAAATAAATTACTTAAATACATTACTTACTAAAATTTCGTTAAATT
1 TATTACTTAAATATGTTACTTAAATACATTACTTACTAAAATTTCGTTAAATT
* * * *
6511876 TATTACTTAAATATGTTACTCAGATGCATTACTTACTAAAATTTGGTTAAATT
1 TATTACTTAAATATGTTACTTAAATACATTACTTACTAAAATTTCGTTAAATT
*
6511929 TTTTACTTAAATATGTTACTTAAATACATTACTTACTAAAATTT
1 TATTACTTAAATATGTTACTTAAATACATTACTTACTAAAATTT
6511973 AAGTATATAT
Statistics
Matches: 87, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
53 87 1.00
ACGTcount: A:0.39, C:0.11, G:0.05, T:0.45
Consensus pattern (53 bp):
TATTACTTAAATATGTTACTTAAATACATTACTTACTAAAATTTCGTTAAATT
Found at i:6511894 original size:13 final size:13
Alignment explanation
Indices: 6511806--6511963 Score: 88
Period size: 13 Copynumber: 12.0 Consensus size: 13
6511796 ATTTACTCTT
* *
6511806 AATATATGACTTG
1 AATATATTACTTA
6511819 AATATATTACTTA
1 AATATATTACTTA
*
6511832 AATAAATTACTTA
1 AATATATTACTTA
*
6511845 AATACATTACTTA
1 AATATATTACTTA
*
6511858 CTAA-A-ATTTCGTTA
1 --AATATATTAC-TTA
*
6511872 AATTTATTACTTA
1 AATATATTACTTA
* *
6511885 AATATGTTACTCA
1 AATATATTACTTA
* **
6511898 GATGCATTACTTA
1 AATATATTACTTA
* **
6511911 CTAAAAT-TTGGTTA
1 --AATATATTACTTA
* *
6511925 AATTTTTTACTTA
1 AATATATTACTTA
*
6511938 AATATGTTACTTA
1 AATATATTACTTA
*
6511951 AATACATTACTTA
1 AATATATTACTTA
6511964 CTAAAATTTA
Statistics
Matches: 108, Mismatches: 29, Indels: 16
0.71 0.19 0.10
Matches are distributed among these distances:
12 5 0.05
13 87 0.81
14 13 0.12
15 3 0.03
ACGTcount: A:0.40, C:0.11, G:0.06, T:0.44
Consensus pattern (13 bp):
AATATATTACTTA
Found at i:6512128 original size:9 final size:9
Alignment explanation
Indices: 6512104--6512265 Score: 145
Period size: 9 Copynumber: 18.3 Consensus size: 9
6512094 TATGTACAAG
6512104 AACTTACAT
1 AACTTACAT
* *
6512113 AATTTACAC
1 AACTTACAT
6512122 AACTTACAT
1 AACTTACAT
*
6512131 AACCTACAT
1 AACTTACAT
6512140 AACTTACAT
1 AACTTACAT
6512149 AA--TACA-
1 AACTTACAT
6512155 AAGCTTACAT
1 AA-CTTACAT
* *
6512165 AACTGAAAT
1 AACTTACAT
* *
6512174 AGCTTACAC
1 AACTTACAT
6512183 AACTTACAT
1 AACTTACAT
6512192 AACTTACAT
1 AACTTACAT
*
6512201 AACTTACAG
1 AACTTACAT
* *
6512210 AAGTTATAAT
1 AACTTA-CAT
6512220 AACTTAC--
1 AACTTACAT
6512227 AACTTACAT
1 AACTTACAT
*
6512236 AACATACAT
1 AACTTACAT
* **
6512245 TACTTTGAT
1 AACTTACAT
6512254 AACTTACAT
1 AACTTACAT
6512263 AAC
1 AAC
6512266 ATGCAGTTGG
Statistics
Matches: 118, Mismatches: 28, Indels: 14
0.74 0.17 0.09
Matches are distributed among these distances:
6 2 0.02
7 11 0.09
9 97 0.82
10 8 0.07
ACGTcount: A:0.45, C:0.21, G:0.04, T:0.30
Consensus pattern (9 bp):
AACTTACAT
Found at i:6514720 original size:21 final size:21
Alignment explanation
Indices: 6514694--6514743 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
6514684 CTACAACTTA
*
6514694 AAGCAGAGGCGGCAGCGAGGG
1 AAGCAGAGGCGGCAGCGAGAG
*
6514715 AAGCAGAGGCTGCAGCGAGAG
1 AAGCAGAGGCGGCAGCGAGAG
6514736 AAGCAGAG
1 AAGCAGAG
6514744 CAGAGCAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.34, C:0.18, G:0.46, T:0.02
Consensus pattern (21 bp):
AAGCAGAGGCGGCAGCGAGAG
Found at i:6517563 original size:11 final size:12
Alignment explanation
Indices: 6517515--6517563 Score: 52
Period size: 11 Copynumber: 4.3 Consensus size: 12
6517505 TTATTAATTC
6517515 ATTATTTTTAAT
1 ATTATTTTTAAT
6517527 ATTA-TTTTAAT
1 ATTATTTTTAAT
*
6517538 ATTGA--CTTAAT
1 ATT-ATTTTTAAT
6517549 ATTATTTTTAA-
1 ATTATTTTTAAT
6517560 ATTA
1 ATTA
6517564 ATTATTAGTA
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
10 1 0.03
11 22 0.69
12 9 0.28
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (12 bp):
ATTATTTTTAAT
Found at i:6522912 original size:48 final size:50
Alignment explanation
Indices: 6522756--6522994 Score: 232
Period size: 48 Copynumber: 4.7 Consensus size: 50
6522746 ACATGCCAAA
** ** *
6522756 GCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCAT
1 GCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTCTTGGTGCCCCT
* * * * * **
6522807 GCCATGTCCCCGACATGGTCTTATAGGGGACCTCTCATCTCGGTGCAAC-
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTTGGTGCCCCT
*
6522856 GCCATGTCCCAGACATGGTCTTACATGAGA-CTCTCGTCTTGGT-CCCCT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTTGGTGCCCCT
* * **
6522904 GCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGGATGTCAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTC--G-TCTT--GG-TGCCCCT
*
6522960 GCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCT
6522995 TTACCCAAAT
Statistics
Matches: 152, Mismatches: 27, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
47 2 0.01
48 39 0.26
49 31 0.20
50 10 0.07
51 28 0.18
52 4 0.03
54 2 0.01
55 1 0.01
56 35 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.28
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTTGGTGCCCCT
Found at i:6522932 original size:97 final size:104
Alignment explanation
Indices: 6522756--6522986 Score: 305
Period size: 97 Copynumber: 2.3 Consensus size: 104
6522746 ACATGCCAAA
* * * *
6522756 GCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATGTCCCCGAC
1 GCCATGTCCCAGACATGGTCTTACATGAGA-GCTCTCGTCATGGTGCCCATGCCATGTCCCAGAC
* *
6522821 ATGGTCTTATAGGGGACCTCTC-ATC-T-CGG-TG-CAAC
65 ATGGTCTTACAGGGGACCTCTCAATCTTAAGGATGTCAAC
* *
6522856 GCCATGTCCCAGACATGGTCTTACATGAGA-CTCTCGTCTTGGT-CCCCTGCCATGTCCCAGACA
1 GCCATGTCCCAGACATGGTCTTACATGAGAGCTCTCGTCATGGTGCCCATGCCATGTCCCAGACA
*
6522919 TGGTCTTACAGGGGACCTCTCATGATCTTAAGGATGTCAAT
66 TGGTCTTACAGGGGACCTCTCA--ATCTTAAGGATGTCAAC
6522960 GCCATGTCCCAGACATGGTCTTACATG
1 GCCATGTCCCAGACATGGTCTTACATG
6522987 GGATCTCTTT
Statistics
Matches: 115, Mismatches: 9, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
97 38 0.33
98 10 0.09
100 32 0.28
101 1 0.01
102 2 0.02
103 2 0.02
104 30 0.26
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.27
Consensus pattern (104 bp):
GCCATGTCCCAGACATGGTCTTACATGAGAGCTCTCGTCATGGTGCCCATGCCATGTCCCAGACA
TGGTCTTACAGGGGACCTCTCAATCTTAAGGATGTCAAC
Found at i:6523109 original size:13 final size:13
Alignment explanation
Indices: 6523093--6523118 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
6523083 GATCATCATC
6523093 AATAAATTCATAA
1 AATAAATTCATAA
6523106 AATAAATTCATAA
1 AATAAATTCATAA
6523119 TTGCTGGAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
AATAAATTCATAA
Found at i:6523773 original size:1 final size:1
Alignment explanation
Indices: 6523757--6524279 Score: 713
Period size: 1 Copynumber: 523.0 Consensus size: 1
6523747 AGCTTGAAAC
* * * *
6523757 AAAATAAAACAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *** * *
6523822 AAAAAAAAAAAAAAAAAAAAAAACACCCAAAAAAAAACAAAAAAAAAAAAACAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * *
6523887 AAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAACAAAAAAAAAAAAAAATAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
** * * *
6523952 AAAAAAAAACCAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAC
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * **
6524017 AAAAAAAAAACATAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
** *** * * *
6524082 AAAAACCAAACCCAAAAAAAAAAAAACAAAAAAAAAACAACAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * *
6524147 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAGAAAAAAAAAAAACA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * *
6524212 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAACAAGAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
6524277 AAA
1 AAA
6524280 CCCTAACTAA
Statistics
Matches: 462, Mismatches: 60, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
1 462 1.00
ACGTcount: A:0.93, C:0.06, G:0.00, T:0.01
Consensus pattern (1 bp):
A
Found at i:6535629 original size:50 final size:50
Alignment explanation
Indices: 6535550--6535797 Score: 266
Period size: 50 Copynumber: 4.8 Consensus size: 50
6535540 GATAATAACA
* ** *
6535550 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCAT-ATAGG
* * * * *
6535601 TGCCCATGCCATGTCCC-GACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATAGG
* * * *
6535650 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATAGG
* *
6535700 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A---T-AGG
*
6535755 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
6535798 TTACCCAAAT
Statistics
Matches: 167, Mismatches: 22, Indels: 11
0.83 0.11 0.05
Matches are distributed among these distances:
48 1 0.01
49 22 0.13
50 87 0.52
51 15 0.09
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATAGG
Found at i:6535723 original size:100 final size:103
Alignment explanation
Indices: 6535549--6535797 Score: 346
Period size: 100 Copynumber: 2.4 Consensus size: 103
6535539 TGATAATAAC
**
6535549 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
6535614 TCCCGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
6535650 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
6535713 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCC-GACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
6535755 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
6535798 TTACCCAAAT
Statistics
Matches: 132, Mismatches: 8, Indels: 11
0.87 0.05 0.07
Matches are distributed among these distances:
98 1 0.01
99 25 0.19
100 60 0.45
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (103 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:6535913 original size:13 final size:13
Alignment explanation
Indices: 6535892--6535923 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
6535882 GCTTGGATCA
*
6535892 TCATCAAATAAAT
1 TCATAAAATAAAT
6535905 TCATAAAATAAAT
1 TCATAAAATAAAT
6535918 TCATAA
1 TCATAA
6535924 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:6536170 original size:30 final size:30
Alignment explanation
Indices: 6536135--6536192 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
6536125 CCTCGACTCT
*
6536135 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
6536165 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
6536193 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:6538651 original size:124 final size:124
Alignment explanation
Indices: 6538426--6538696 Score: 454
Period size: 125 Copynumber: 2.2 Consensus size: 124
6538416 AGCAAAAAAT
* * *
6538426 GCGTCCACATGGGAGTGATTTCAAAACTTCTTTTGATAAAGCATCCTGCTTGAAGCGTTTTTATA
1 GCGTCCACATGGGAGCGATTTCAAAACTTCTTCTGATAAAGCATCCTGCTTCAAGCGTTTTTATA
6538491 CTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGACCTACTGTAGCAAAAGC
66 CTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGACCTACTGTAGCAAAAGC
* * *
6538550 GCGTCCTCGTGGGAGCGATTTCAGAAA-TTCTTCTGATAAAGCATCTTGCTTCAAGCGGTTTTTA
1 GCGTCCACATGGGAGCGATTTCA-AAACTTCTTCTGATAAAGCATCCTGCTTCAAGC-GTTTTTA
*
6538614 TACTATTTGCTCAGAAACGTCATCTCGAAATTATTTTTTCAGGACCTACTGTAGCAAAAGC
64 TACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGACCTACTGTAGCAAAAGC
6538675 GCGTCCACATGGGAGCGATTTC
1 GCGTCCACATGGGAGCGATTTC
6538697 CTTAATAAAT
Statistics
Matches: 136, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
124 46 0.34
125 90 0.66
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (124 bp):
GCGTCCACATGGGAGCGATTTCAAAACTTCTTCTGATAAAGCATCCTGCTTCAAGCGTTTTTATA
CTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGACCTACTGTAGCAAAAGC
Found at i:6548918 original size:14 final size:13
Alignment explanation
Indices: 6548895--6548925 Score: 53
Period size: 14 Copynumber: 2.3 Consensus size: 13
6548885 TCGATTAAAC
6548895 TAAATAAATCGAA
1 TAAATAAATCGAA
6548908 TAAATTAAATCGAA
1 TAAA-TAAATCGAA
6548922 TAAA
1 TAAA
6548926 CTGGTGAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.24
14 13 0.76
ACGTcount: A:0.61, C:0.06, G:0.06, T:0.26
Consensus pattern (13 bp):
TAAATAAATCGAA
Found at i:6564572 original size:18 final size:18
Alignment explanation
Indices: 6564549--6564585 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
6564539 CTCTAAAATC
6564549 ACATGCA-AAAGCAAGACT
1 ACATGCATAAA-CAAGACT
6564567 ACATGCATAAACAAGACT
1 ACATGCATAAACAAGACT
6564585 A
1 A
6564586 AAAAATGTGC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 15 0.83
19 3 0.17
ACGTcount: A:0.51, C:0.22, G:0.14, T:0.14
Consensus pattern (18 bp):
ACATGCATAAACAAGACT
Found at i:6573552 original size:24 final size:24
Alignment explanation
Indices: 6573483--6573552 Score: 65
Period size: 23 Copynumber: 3.0 Consensus size: 24
6573473 ATTTCCCCTC
6573483 TTTTCCTTCTTTCTCCTT-TGTTTA
1 TTTTCCTTCTTTCT-CTTCTGTTTA
* * *
6573507 -TTTCCTTTTTTTTCTAAC-GTTTA
1 TTTTCCTTCTTTCTCT-TCTGTTTA
*
6573530 TTTTCCTTCTTTGTCTTCTGTTT
1 TTTTCCTTCTTTCTCTTCTGTTT
6573553 TCTCTCGTCT
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
22 2 0.06
23 17 0.47
24 17 0.47
ACGTcount: A:0.06, C:0.21, G:0.06, T:0.67
Consensus pattern (24 bp):
TTTTCCTTCTTTCTCTTCTGTTTA
Found at i:6577308 original size:24 final size:24
Alignment explanation
Indices: 6577276--6577323 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
6577266 ATAGCCGACA
6577276 AGAAATTAATCTTTGTTATGAACT
1 AGAAATTAATCTTTGTTATGAACT
6577300 AGAAATTAATCTTTGTTATGAACT
1 AGAAATTAATCTTTGTTATGAACT
6577324 TTCTCTGAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.08, G:0.12, T:0.42
Consensus pattern (24 bp):
AGAAATTAATCTTTGTTATGAACT
Found at i:6580235 original size:6 final size:6
Alignment explanation
Indices: 6580226--6580253 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
6580216 CCAAGACATA
6580226 ACTTTG ACTTTG ACTTTG ACTTTG ACTT
1 ACTTTG ACTTTG ACTTTG ACTTTG ACTT
6580254 GTTCAAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.18, C:0.18, G:0.14, T:0.50
Consensus pattern (6 bp):
ACTTTG
Found at i:6581333 original size:277 final size:281
Alignment explanation
Indices: 6580817--6581333 Score: 620
Period size: 277 Copynumber: 1.8 Consensus size: 281
6580807 TTTTTGTTTA
* *
6580817 TTGTGATTTTTGAAATCCCTTGCTTCATCCGAAATTGATTTCAGGTATGAATCATTACTTAAACT
1 TTGTGATTTTTGAAATCCCTTGCTTCATCCGAAACTAATTTCAGGTATGAATCATTACTTAAACT
* *
6580882 TTGTCTTTGCCTTTTCATTTCTGTTTTTAGTTTCAAATATATGCTTTTTGACTTGTATTTCAGTG
66 TTGTCTTTGCCTTTTCATCTCTGTTTTTAGTTTCAAATATATGC--TTT-ACTTGTACTT-AGTG
* * * ** * * *
6580947 GGTTTATTTTATGGTTTTTGGTTTTCAGGTTTAGAAATCATTGTTTCATTTTGTGTTTCTAATCT
127 GGTTTATTCTAAGGTTTTTGGTTTTCAGCTTTAGAAATCACAGTTTCATTCTGTCTTTCAAATCT
* * ** *
6581012 GTGGATCTCAGTTTGGTTGTGATTTTTGTTTGTTTGTGGTTTACTTTCGTGAGAGAGAAACCTTA
192 ATGGATCTCAGTTCGGTTGTGATTTTTGTTTGAGTGTCGTTTACTTTCGTGAGAGAGAAACCTTA
6581077 AGTTTTTATCTGTCGTTTGTGATGT
257 AGTTTTTATCTGTCGTTTGTGATGT
** * * *
6581102 TTGTGATTTTTGAAA-CCCTTGCTTCATTGGAGACTAATTTTAGGTATGAATCATTACTTGAACT
1 TTGTGATTTTTGAAATCCCTTGCTTCATCCGAAACTAATTTCAGGTATGAATCATTACTTAAAC-
* *
6581166 TTTTTCTTTTCCTTTTTCATCTCTG-TTTTAGTTTCAAATCAT-TGC-TT-CTT-TACTT-GTGG
65 TTTGTCTTTGCC-TTTTCATCTCTGTTTTTAGTTTCAAAT-ATATGCTTTACTTGTACTTAGTGG
** *
6581225 GTTT-TTGCTAAGGTTTTTTTTTTTCAGCTTTAGAAATCACAGTTTCGTTCCT-TCTTTCAAATC
128 GTTTATT-CTAAGGTTTTTGGTTTTCAGCTTTAGAAATCACAGTTTCATT-CTGTCTTTCAAATC
* **
6581288 TATGGATCTCGGTTCGGTTGTTCTTTTTGTTTGAGTGTCGTTTACT
191 TATGGATCTCAGTTCGGTTGTGATTTTTGTTTGAGTGTCGTTTACT
6581334 ATATGATGTT
Statistics
Matches: 197, Mismatches: 30, Indels: 18
0.80 0.12 0.07
Matches are distributed among these distances:
276 2 0.01
277 89 0.45
278 1 0.01
279 4 0.02
280 3 0.02
282 2 0.01
284 41 0.21
285 42 0.21
286 13 0.07
ACGTcount: A:0.18, C:0.14, G:0.18, T:0.51
Consensus pattern (281 bp):
TTGTGATTTTTGAAATCCCTTGCTTCATCCGAAACTAATTTCAGGTATGAATCATTACTTAAACT
TTGTCTTTGCCTTTTCATCTCTGTTTTTAGTTTCAAATATATGCTTTACTTGTACTTAGTGGGTT
TATTCTAAGGTTTTTGGTTTTCAGCTTTAGAAATCACAGTTTCATTCTGTCTTTCAAATCTATGG
ATCTCAGTTCGGTTGTGATTTTTGTTTGAGTGTCGTTTACTTTCGTGAGAGAGAAACCTTAAGTT
TTTATCTGTCGTTTGTGATGT
Found at i:6590823 original size:27 final size:27
Alignment explanation
Indices: 6590785--6590837 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
6590775 TTAAATGTGA
6590785 AAGGGGTTGCTAAGTGCTGATTCCCCC
1 AAGGGGTTGCTAAGTGCTGATTCCCCC
6590812 AAGGGGTTGCTAAGTGCTGATTCCCC
1 AAGGGGTTGCTAAGTGCTGATTCCCC
6590838 GACTCATTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.26
Consensus pattern (27 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCC
Found at i:6590893 original size:102 final size:95
Alignment explanation
Indices: 6590718--6590964 Score: 395
Period size: 102 Copynumber: 2.5 Consensus size: 95
6590708 GAATATAAAG
6590718 GGGGTTGCTAAGTGCTGATTCCTCCAAGGGGTTGCTAAGTGCTGATTCCACCGTATTTTAAATGT
1 GGGGTTGCTAAGTGCTGATTCC-CCAAGGGGTTGCTAAGTGCTGATTCCACCGTATTTTAAATGT
6590783 GAAAGGGGTTGCTAAGTGCTGATTCCCCCAA
65 GAAAGGGGTTGCTAAGTGCTGATTCCCCCAA
6590814 GGGGTTGCTAAGTGCTGATTCCCCGACTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATTTT
1 GGGGTTGCTAAGTGCTGATTCCCC-A---A--GG-GGTTGCTAAGTGCTGATTCCACCGTATTTT
*
6590879 AAATGTGAAGGGGGTTGCTAAGTGCTGATTCCCCCAA
59 AAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCCCAA
*
6590916 GGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGTTGATTCC
1 GGGGTTGCTAAGTGCTGATT-CCCCAAGGGGTTGCTAAGTGCTGATTCC
6590965 CCGAATCATT
Statistics
Matches: 141, Mismatches: 2, Indels: 16
0.89 0.01 0.10
Matches are distributed among these distances:
95 2 0.01
96 42 0.30
97 2 0.01
99 2 0.01
101 2 0.01
102 87 0.62
103 4 0.03
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.31
Consensus pattern (95 bp):
GGGGTTGCTAAGTGCTGATTCCCCAAGGGGTTGCTAAGTGCTGATTCCACCGTATTTTAAATGTG
AAAGGGGTTGCTAAGTGCTGATTCCCCCAA
Found at i:6590925 original size:27 final size:27
Alignment explanation
Indices: 6590889--6590966 Score: 147
Period size: 27 Copynumber: 2.9 Consensus size: 27
6590879 AAATGTGAAG
6590889 GGGGTTGCTAAGTGCTGATTCCCCCAA
1 GGGGTTGCTAAGTGCTGATTCCCCCAA
6590916 GGGGTTGCTAAGTGCTGATTCCCCCAA
1 GGGGTTGCTAAGTGCTGATTCCCCCAA
*
6590943 GGGGTTGCTAAGTGTTGATTCCCC
1 GGGGTTGCTAAGTGCTGATTCCCC
6590967 GAATCATTGG
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.17, C:0.24, G:0.31, T:0.28
Consensus pattern (27 bp):
GGGGTTGCTAAGTGCTGATTCCCCCAA
Found at i:6590950 original size:129 final size:130
Alignment explanation
Indices: 6590785--6591042 Score: 455
Period size: 129 Copynumber: 2.0 Consensus size: 130
6590775 TTAAATGTGA
*
6590785 AAGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGACTCATTGGTG
1 AAGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTG
* * *
6590850 GTTGCTAAGTGCTGATTCCACCGTAT-TTTAAATGTGAAGGGGGTTGCTAAGTGCTGATTCCCCC
66 GTTGCTAAGTGCTGATTCCACCATATCTTTAAATATGAAAGGGGTTGCTAAGTGCTGATTCCCCC
*
6590914 AAGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGTTGATTCCCCGAATCATTGGTG
1 AAGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTG
*
6590979 GTTGCTAAGTGCTGATTCCACCATATCTTTGAATATGAAAGGGGTTGCTAAGTGCTGATTCCCC
66 GTTGCTAAGTGCTGATTCCACCATATCTTTAAATATGAAAGGGGTTGCTAAGTGCTGATTCCCC
6591043 GAATCACTGG
Statistics
Matches: 122, Mismatches: 6, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
129 88 0.72
130 34 0.28
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.31
Consensus pattern (130 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTG
GTTGCTAAGTGCTGATTCCACCATATCTTTAAATATGAAAGGGGTTGCTAAGTGCTGATTCCCCC
Found at i:6593118 original size:41 final size:40
Alignment explanation
Indices: 6593022--6593136 Score: 133
Period size: 41 Copynumber: 2.8 Consensus size: 40
6593012 GAATGTAATA
* *
6593022 CAGACTTTACGTCTAGCAGGCTTGATGCCGGTGAAATGATT
1 CAGACTATACGTCTAGCAGGCTTAATGCCGGTGAAAT-ATT
*
6593063 CAGACTTTACGTCTAGCAGGCTTAATGCCGGTGATACAT-TT
1 CAGACTATACGTCTAGCAGGCTTAATGCCGGTGA-A-ATATT
* * * *
6593104 CATACTATAGGTCTAGCAGGCTAAAAGCCGGTG
1 CAGACTATACGTCTAGCAGGCTTAATGCCGGTG
6593137 TACCGAATCA
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
41 63 0.95
42 1 0.02
43 2 0.03
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (40 bp):
CAGACTATACGTCTAGCAGGCTTAATGCCGGTGAAATATT
Found at i:6593822 original size:230 final size:229
Alignment explanation
Indices: 6593371--6593838 Score: 884
Period size: 230 Copynumber: 2.0 Consensus size: 229
6593361 CATTAGGTAC
*
6593371 ATGCGATTGTTGAATTTATAAATGCATATGGTGATATGCGGTTGTTAAATATATATATGTTGAGC
1 ATGCGATTGTTGAATTTATAAATGCATATGGTGATATGCGGTTGTTAAACATATATATGTTGAGC
6593436 CTATGTGTTTGATAATCATTTATGTATGCATTTGAGATATATATATATAAATGTACTCATTTATA
66 CTATGTGTTTGATAATCATTTATGTATGCATTTGAGATATATATATATAAATGTACTCATTTATA
6593501 TGTATATGAAGAATATGTATATATATTCGAATGTATGTATTAGCTATGTATTCAGGTATAAATTC
131 TGTATATGAAGAATATGTATATATATTCGAATGTATGTATTAGCTATGTATTCAGGTATAAATTC
6593566 ATAATGAATATATATATATACAAACGAATAT-AA
196 ATAATGAATATATATATATACAAACGAATATAAA
6593599 ATGCGATTGTTGAATTTATAAATGCATATGGTGATATGCGGTTGTTAAACATATATATGTTGAGC
1 ATGCGATTGTTGAATTTATAAATGCATATGGTGATATGCGGTTGTTAAACATATATATGTTGAGC
6593664 CTATGTGTTTGATAATCATTTATGTATGCATTTGAGATATATATATATATAAATGTACTCATTTA
66 CTATGTGTTTGATAATCATTTATGTATGCATTTGAG--ATATATATATATAAATGTACTCATTTA
6593729 TATGTATATGAAGAATATGTATATATATTCGAATGTATGTATTAGCTATGTATTCAGGTATAAAT
129 TATGTATATGAAGAATATGTATATATATTCGAATGTATGTATTAGCTATGTATTCAGGTATAAAT
*
6593794 TCATAATGAGTATATATATATACAAACGAATATAAA
194 TCATAATGAATATATATATATACAAACGAATATAAA
*
6593830 ATGTGATTG
1 ATGCGATTG
6593839 GTATATATGT
Statistics
Matches: 234, Mismatches: 3, Indels: 3
0.98 0.01 0.01
Matches are distributed among these distances:
228 100 0.43
230 124 0.53
231 10 0.04
ACGTcount: A:0.37, C:0.07, G:0.16, T:0.41
Consensus pattern (229 bp):
ATGCGATTGTTGAATTTATAAATGCATATGGTGATATGCGGTTGTTAAACATATATATGTTGAGC
CTATGTGTTTGATAATCATTTATGTATGCATTTGAGATATATATATATAAATGTACTCATTTATA
TGTATATGAAGAATATGTATATATATTCGAATGTATGTATTAGCTATGTATTCAGGTATAAATTC
ATAATGAATATATATATATACAAACGAATATAAA
Found at i:6595087 original size:6 final size:6
Alignment explanation
Indices: 6595062--6595098 Score: 56
Period size: 6 Copynumber: 5.8 Consensus size: 6
6595052 CCAAACACAC
6595062 CAGTATA CAGTAA TCAGTAA CAGTAA CAGTAA CAGTA
1 CAGTA-A CAGTAA -CAGTAA CAGTAA CAGTAA CAGTA
6595099 TTCAACACAC
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
6 18 0.62
7 11 0.38
ACGTcount: A:0.46, C:0.16, G:0.16, T:0.22
Consensus pattern (6 bp):
CAGTAA
Found at i:6595129 original size:45 final size:45
Alignment explanation
Indices: 6595073--6595182 Score: 159
Period size: 45 Copynumber: 2.4 Consensus size: 45
6595063 AGTATACAGT
*
6595073 AATCAGTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCTG
1 AATCAGTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCCG
* * *
6595118 AA-CTTGTAACAGTAACGGTAACAGTATTCGACACACAAAGTGCCG
1 AATC-AGTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCCG
*
6595163 AATCAATAACAGTAACAGTA
1 AATCAGTAACAGTAACAGTA
6595183 GTCGGCACAT
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
44 1 0.02
45 54 0.96
46 1 0.02
ACGTcount: A:0.44, C:0.20, G:0.16, T:0.20
Consensus pattern (45 bp):
AATCAGTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCCG
Found at i:6595178 original size:39 final size:41
Alignment explanation
Indices: 6595085--6595199 Score: 110
Period size: 45 Copynumber: 2.8 Consensus size: 41
6595075 TCAGTAACAG
* * *
6595085 TAACAGTAACAGTATTCAACACACAAAGTGCTGAACTTGTAACAG
1 TAACAGTAACAGTATTCGACACACAAAGTGCCGAA--T-T-ACAA
*
6595130 TAACGGTAACAGTATTCGACACACAAAGTGCCGAA-T-CAA
1 TAACAGTAACAGTATTCGACACACAAAGTGCCGAATTACAA
* * *
6595169 TAACAGTAACAGTAGTCGGCACA-TAAGTGCC
1 TAACAGTAACAGTATTCGACACACAAAGTGCC
6595200 TGATCAGTAA
Statistics
Matches: 62, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
38 7 0.11
39 22 0.35
41 1 0.02
45 32 0.52
ACGTcount: A:0.40, C:0.22, G:0.18, T:0.20
Consensus pattern (41 bp):
TAACAGTAACAGTATTCGACACACAAAGTGCCGAATTACAA
Found at i:6596431 original size:17 final size:17
Alignment explanation
Indices: 6596398--6596437 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
6596388 TTTCCTATTC
*
6596398 TGTTTCTTTTCTCCTTT
1 TGTTTCTTTTATCCTTT
*
6596415 TGTTTCTTTTATTCTTT
1 TGTTTCTTTTATCCTTT
6596432 TAGTTT
1 T-GTTT
6596438 ATGTTTTGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 16 0.80
18 4 0.20
ACGTcount: A:0.05, C:0.15, G:0.07, T:0.72
Consensus pattern (17 bp):
TGTTTCTTTTATCCTTT
Found at i:6596481 original size:16 final size:17
Alignment explanation
Indices: 6596453--6596484 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
6596443 TTGTTTATTA
6596453 TTTAATAAATATAATAC
1 TTTAATAAATATAATAC
6596470 TTTAAT-AATATAATA
1 TTTAATAAATATAATA
6596485 TAATACAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (17 bp):
TTTAATAAATATAATAC
Found at i:6596619 original size:19 final size:19
Alignment explanation
Indices: 6596597--6596649 Score: 70
Period size: 22 Copynumber: 2.6 Consensus size: 19
6596587 CATCTTATTT
*
6596597 ATTTTATAATATAATAATA
1 ATTTAATAATATAATAATA
6596616 ATTTAATAATTTAATAATAATA
1 ATTTAATAA--T-ATAATAATA
6596638 ATTTAATAATAT
1 ATTTAATAATAT
6596650 TTTTTTAACA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
19 10 0.33
20 1 0.03
21 1 0.03
22 18 0.60
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
ATTTAATAATATAATAATA
Found at i:6596622 original size:11 final size:11
Alignment explanation
Indices: 6596602--6596648 Score: 53
Period size: 11 Copynumber: 4.3 Consensus size: 11
6596592 TATTTATTTT
*
6596602 ATAATATAATA
1 ATAATTTAATA
6596613 ATAATTTAATA
1 ATAATTTAATA
6596624 AT--TTAATAATA
1 ATAATT--TAATA
6596635 ATAATTTAATA
1 ATAATTTAATA
6596646 ATA
1 ATA
6596649 TTTTTTTAAC
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
9 2 0.06
11 27 0.87
13 2 0.06
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (11 bp):
ATAATTTAATA
Found at i:6596657 original size:14 final size:14
Alignment explanation
Indices: 6596619--6596648 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
6596609 AATAATAATT
6596619 TAATAATTTAATAA
1 TAATAATTTAATAA
6596633 TAATAATTTAATAA
1 TAATAATTTAATAA
6596647 TA
1 TA
6596649 TTTTTTTAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (14 bp):
TAATAATTTAATAA
Found at i:6600977 original size:35 final size:35
Alignment explanation
Indices: 6600937--6601045 Score: 125
Period size: 35 Copynumber: 3.1 Consensus size: 35
6600927 TTAAAGCAAT
6600937 ATTTATTAAATTACAATTTAAATATATGAATAAAA
1 ATTTATTAAATTACAATTTAAATATATGAATAAAA
* * *
6600972 ATTTATAATAAA-TATAATTTAAATA-AAGAA-AGCAAT
1 ATTTAT--TAAATTACAATTTAAATATATGAATA--AAA
*
6601008 ATTTATTAAATTACAATTTAAATATATAAATAAAA
1 ATTTATTAAATTACAATTTAAATATATGAATAAAA
6601043 ATT
1 ATT
6601046 CAAATAAAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 14
0.74 0.09 0.17
Matches are distributed among these distances:
34 5 0.08
35 27 0.45
36 23 0.38
37 5 0.08
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.39
Consensus pattern (35 bp):
ATTTATTAAATTACAATTTAAATATATGAATAAAA
Found at i:6600992 original size:36 final size:37
Alignment explanation
Indices: 6600943--6601053 Score: 117
Period size: 36 Copynumber: 3.1 Consensus size: 37
6600933 CAATATTTAT
6600943 TAAATTACAATTTAAATATATGAATAAAAATTTATAA
1 TAAATTACAATTTAAATATATGAATAAAAATTTATAA
* * *
6600980 TAAA-TATAATTTAAATA-AAGAA-AGCAATATTTAT--
1 TAAATTACAATTTAAATATATGAATA--AAAATTTATAA
* *
6601014 TAAATTACAATTTAAATATATAAATAAAAATTCA-AA
1 TAAATTACAATTTAAATATATGAATAAAAATTTATAA
6601050 TAAA
1 TAAA
6601054 ATTTATTTAA
Statistics
Matches: 59, Mismatches: 8, Indels: 15
0.72 0.10 0.18
Matches are distributed among these distances:
34 5 0.08
35 22 0.37
36 27 0.46
37 5 0.08
ACGTcount: A:0.59, C:0.04, G:0.03, T:0.35
Consensus pattern (37 bp):
TAAATTACAATTTAAATATATGAATAAAAATTTATAA
Found at i:6601226 original size:17 final size:16
Alignment explanation
Indices: 6601201--6601243 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
6601191 AAAAAGAAAA
*
6601201 AAAAGTGAAATGAAATT
1 AAAA-TGAAATCAAATT
6601218 AAAATTGAAATCAAATT
1 AAAA-TGAAATCAAATT
*
6601235 CAAATGAAA
1 AAAATGAAA
6601244 AAAATTCGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
16 5 0.22
17 18 0.78
ACGTcount: A:0.60, C:0.05, G:0.12, T:0.23
Consensus pattern (16 bp):
AAAATGAAATCAAATT
Found at i:6601612 original size:20 final size:20
Alignment explanation
Indices: 6601552--6601613 Score: 61
Period size: 20 Copynumber: 3.0 Consensus size: 20
6601542 TTCAAGCACC
*
6601552 ATCGTTCATGGTTGATCACT
1 ATCGTTCATGGTTGATCACA
* **
6601572 ATCGATCACCGTCACTGATCACA
1 ATCGTTCATGGT---TGATCACA
6601595 ATCGTTCATGGTTGATCAC
1 ATCGTTCATGGTTGATCAC
6601614 TGTCATCGAT
Statistics
Matches: 32, Mismatches: 7, Indels: 6
0.71 0.16 0.13
Matches are distributed among these distances:
20 16 0.50
23 16 0.50
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (20 bp):
ATCGTTCATGGTTGATCACA
Found at i:6601908 original size:13 final size:14
Alignment explanation
Indices: 6601890--6601919 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
6601880 CATGATCCTG
6601890 AATA-TTTTTAAAA
1 AATATTTTTTAAAA
6601903 AATATTTTTTAAAA
1 AATATTTTTTAAAA
6601917 AAT
1 AAT
6601920 TAATTATTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (14 bp):
AATATTTTTTAAAA
Found at i:6604059 original size:35 final size:35
Alignment explanation
Indices: 6604019--6604127 Score: 125
Period size: 35 Copynumber: 3.1 Consensus size: 35
6604009 TTAAAGCAAT
6604019 ATTTATTAAATTACAATTTAAATATATGAATAAAA
1 ATTTATTAAATTACAATTTAAATATATGAATAAAA
* * *
6604054 ATTTATAATAAA-TATAATTTAAATA-AAGAA-AGCAAT
1 ATTTAT--TAAATTACAATTTAAATATATGAATA--AAA
*
6604090 ATTTATTAAATTACAATTTAAATATATAAATAAAA
1 ATTTATTAAATTACAATTTAAATATATGAATAAAA
6604125 ATT
1 ATT
6604128 CAAATAAAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 14
0.74 0.09 0.17
Matches are distributed among these distances:
34 5 0.08
35 27 0.45
36 23 0.38
37 5 0.08
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.39
Consensus pattern (35 bp):
ATTTATTAAATTACAATTTAAATATATGAATAAAA
Found at i:6604074 original size:36 final size:37
Alignment explanation
Indices: 6604025--6604135 Score: 117
Period size: 36 Copynumber: 3.1 Consensus size: 37
6604015 CAATATTTAT
6604025 TAAATTACAATTTAAATATATGAATAAAAATTTATAA
1 TAAATTACAATTTAAATATATGAATAAAAATTTATAA
* * *
6604062 TAAA-TATAATTTAAATA-AAGAA-AGCAATATTTAT--
1 TAAATTACAATTTAAATATATGAATA--AAAATTTATAA
* *
6604096 TAAATTACAATTTAAATATATAAATAAAAATTCA-AA
1 TAAATTACAATTTAAATATATGAATAAAAATTTATAA
6604132 TAAA
1 TAAA
6604136 ATTTATTTAA
Statistics
Matches: 59, Mismatches: 8, Indels: 15
0.72 0.10 0.18
Matches are distributed among these distances:
34 5 0.08
35 22 0.37
36 27 0.46
37 5 0.08
ACGTcount: A:0.59, C:0.04, G:0.03, T:0.35
Consensus pattern (37 bp):
TAAATTACAATTTAAATATATGAATAAAAATTTATAA
Found at i:6604311 original size:17 final size:16
Alignment explanation
Indices: 6604289--6604326 Score: 67
Period size: 17 Copynumber: 2.3 Consensus size: 16
6604279 AAAAAAAAAG
6604289 TGAAATCAAATTCAAA
1 TGAAATCAAATTCAAA
6604305 TTGAAATCAAATTCAAA
1 -TGAAATCAAATTCAAA
6604322 TGAAA
1 TGAAA
6604327 AAAAAAATTC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 5 0.24
17 16 0.76
ACGTcount: A:0.55, C:0.11, G:0.08, T:0.26
Consensus pattern (16 bp):
TGAAATCAAATTCAAA
Found at i:6611602 original size:21 final size:21
Alignment explanation
Indices: 6611561--6611604 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
6611551 AAACATTATA
*
6611561 AAAATTGTAAAAATGAGAAAT
1 AAAATTGTAAAAATGAAAAAT
*
6611582 AAAATTTTAAAAAAT-AAAAAT
1 AAAATTGT-AAAAATGAAAAAT
6611603 AA
1 AA
6611605 TTTAAAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.68, C:0.00, G:0.07, T:0.25
Consensus pattern (21 bp):
AAAATTGTAAAAATGAAAAAT
Found at i:6612631 original size:13 final size:13
Alignment explanation
Indices: 6612613--6612656 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
6612603 CCTTGAGGGC
6612613 AAATTCTGTTCTT
1 AAATTCTGTTCTT
* *
6612626 AAATTCTGAATGCAT
1 AAATTCTG--TTCTT
6612641 AAATTCTGTTCTT
1 AAATTCTGTTCTT
6612654 AAA
1 AAA
6612657 GGAATGCACC
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
13 14 0.56
15 11 0.44
ACGTcount: A:0.34, C:0.14, G:0.09, T:0.43
Consensus pattern (13 bp):
AAATTCTGTTCTT
Found at i:6613571 original size:56 final size:56
Alignment explanation
Indices: 6613434--6613572 Score: 167
Period size: 56 Copynumber: 2.5 Consensus size: 56
6613424 GATCTAACAT
* *
6613434 TATGTAAAATTATTAAGCCAAAAAAATTTTCTTAATGGTTAGTAAAATTTATCAAA
1 TATGTAAAATTATTAAGCCAAAAAAATTGTCTTAATGGTTAGTAAAATGTATCAAA
* * * * *
6613490 TAATCTCAAATTATTAAGTCC--AAAAATTGTGTTAATGGTTATTAAAGTGT-TCAAAA
1 T-ATGTAAAATTATTAAG-CCAAAAAAATTGTCTTAATGGTTAGTAAAATGTATC-AAA
6613546 TATGTAAAATTATTAAGCCAAAAAAAT
1 TATGTAAAATTATTAAGCCAAAAAAAT
6613573 ATGTAAAATT
Statistics
Matches: 69, Mismatches: 9, Indels: 10
0.78 0.10 0.11
Matches are distributed among these distances:
54 2 0.03
55 16 0.23
56 35 0.51
57 14 0.20
58 2 0.03
ACGTcount: A:0.46, C:0.08, G:0.10, T:0.36
Consensus pattern (56 bp):
TATGTAAAATTATTAAGCCAAAAAAATTGTCTTAATGGTTAGTAAAATGTATCAAA
Found at i:6613575 original size:26 final size:26
Alignment explanation
Indices: 6613542--6613598 Score: 114
Period size: 26 Copynumber: 2.2 Consensus size: 26
6613532 TAAAGTGTTC
6613542 AAAATATGTAAAATTATTAAGCCAAA
1 AAAATATGTAAAATTATTAAGCCAAA
6613568 AAAATATGTAAAATTATTAAGCCAAA
1 AAAATATGTAAAATTATTAAGCCAAA
6613594 AAAAT
1 AAAAT
6613599 TTAGGTTAGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.60, C:0.07, G:0.07, T:0.26
Consensus pattern (26 bp):
AAAATATGTAAAATTATTAAGCCAAA
Found at i:6613682 original size:29 final size:29
Alignment explanation
Indices: 6613596--6614156 Score: 843
Period size: 29 Copynumber: 19.7 Consensus size: 29
6613586 AAGCCAAAAA
*
6613596 AATTTAGGTTA-GTTTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
* *
6613624 AATTTAGGTTA-GATTAGGGTTTCTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
*
6613652 AATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
*
6613681 AATTTAGGTTA-GATTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
*
6613709 AATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
* *
6613738 AATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
6613766 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
* *
6613795 AATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
*
6613823 AATTTAGGTTA-GATTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
*
6613851 AATTTAGGTTAGGTTTAGGATTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
* *
6613880 AATTTAGGTTAGATTTAGGGTTTCTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
*
6613909 AATTTAGGTAAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
* *
6613938 AATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
6613966 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
*
6613995 AATTTAGGTTA-GATTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
6614023 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
* *
6614052 AATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
6614080 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
* * *
6614109 AATTTAGATTAGGTTTAGTGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
*
6614138 AATTTAGGTTAGGGTTAGG
1 AATTTAGGTTAGGTTTAGG
6614157 TTAGGGTTTT
Statistics
Matches: 485, Mismatches: 41, Indels: 13
0.90 0.08 0.02
Matches are distributed among these distances:
28 221 0.46
29 264 0.54
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (29 bp):
AATTTAGGTTAGGTTTAGGGTTTTTAGTT
Found at i:6613683 original size:57 final size:57
Alignment explanation
Indices: 6613596--6614156 Score: 860
Period size: 57 Copynumber: 9.8 Consensus size: 57
6613586 AAGCCAAAAA
* *
6613596 AATTTAGGTTAGTTTAGGGTTTTTAATTAATTTAGGTTA-GATTAGGGTTTCTAGTT
1 AATTTAGGTTAGTTTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAGTT
*
6613652 AATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGGTTA-GATTAGGGTTTTTAGTT
1 AATTTAGGTTA-GTTTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAGTT
* *
6613709 AATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTA-GTTTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAGTT
* * *
6613766 AATTTAGGTTAGGTTTAGGGTTTTTAGTTAATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTA-GTTTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAGTT
* * *
6613823 AATTTAGGTTAGATTAGGGTTTTTAGTTAATTTAGGTTAGGTTTAGGATTTTTAGTT
1 AATTTAGGTTAGTTTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAGTT
* * *
6613880 AATTTAGGTTAGATTTAGGGTTTCTAGTTAATTTAGGTAAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAG-TTTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAGTT
*
6613938 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGTTTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAGTT
* *
6613995 AATTTAGGTTAGATTAGGGTTTTTAGTTAATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGTTTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAGTT
*
6614052 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGTTTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAGTT
* * *
6614109 AATTTAGATTAGGTTTAGTGTTTTTAATTAATTTAGGTTAGGGTTAGG
1 AATTTAGGTTA-GTTTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGG
6614157 TTAGGGTTTT
Statistics
Matches: 480, Mismatches: 21, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
56 38 0.08
57 356 0.74
58 86 0.18
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (57 bp):
AATTTAGGTTAGTTTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAGTT
Found at i:6614191 original size:86 final size:81
Alignment explanation
Indices: 6613596--6614191 Score: 477
Period size: 85 Copynumber: 7.0 Consensus size: 81
6613586 AAGCCAAAAA
* * *
6613596 AATTTAGGTTA-GTTTAGGGTTTTTAATTAATTTAGGTTAGATTAGGG-TTTCTAGTTAATTTAG
1 AATTTAGATTAGGTTTAGGGTTTTTAATTAATTTAGGTTAGATTAGGGTTTTC-AATTAAATTAG
*
6613659 GTTAGGTTTAGGGTTTTTAATT
65 GTT--GTTTA--G-TTTTAGTT
* * * * * *
6613681 AATTTAGGTTA-GATTAGGGTTTTTAGTTAATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAG
1 AATTTAGATTAGGTTTAGGGTTTTTAATTAATTTAGGTTA-GATTAGGGTTTTCAATTAAATTAG
* *
6613745 GTTAGATTAGGGTTTTTAATT
65 GTT-GTTTA--G-TTTTAGTT
* * * *
6613766 AATTTAGGTTAGGTTTAGGGTTTTTAGTTAATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGG
1 AATTTAGATTAGGTTTAGGGTTTTTAATTAATTTAGGTTAGATTAGGGTTTTCAATTAAATTAGG
*
6613831 TTAGATTAGGGTTTTTAGTT
66 TT-GTTTA--G-TTTTAGTT
* * * * *
6613851 AATTTAGGTTAGGTTTAGGATTTTTAGTTAATTTAGGTTAGATTTAGGG-TTTCTAGTTAATTTA
1 AATTTAGATTAGGTTTAGGGTTTTTAATTAATTTAGGTTAGA-TTAGGGTTTTC-AATTAAATTA
*
6613915 GGTAAGGTTTAGGGTTTTTAGTT
64 GGT--TGTTTA--G-TTTTAGTT
* * * * * *
6613938 AATTTAGGTTA-GATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAGTTAATTTAG
1 AATTTAGATTAGGTTTAGGGTTTTTAATTAATTTAGGTTA-GATTAGGGTTTTCAATTAAATTAG
*
6614002 GTTAGATTAGGGTTTTTAGTT
65 GTT-GTTTA--G-TTTTAGTT
* * * *
6614023 AATTTAGGTTAGGTTTAGGGTTTTTAGTTAATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGG
1 AATTTAGATTAGGTTTAGGGTTTTTAATTAATTTAGGTTAGATTAGGGTTTTCAATTAAATTAGG
6614088 TTAGGTTTAGGGTTTTTAGTT
66 TT--GTTTA--G-TTTTAGTT
*
6614109 AATTTAGATTAGGTTTAGTGTTTTTAATTAATTTAGGTTAGGGTTAGGTTAGGGTTTTCAATTAA
1 AATTTAGATTAGGTTTAGGGTTTTTAATTAATTTAGGTTA--G--A--TTAGGGTTTTCAATTAA
6614174 ATTAGGGTT-TTTA-TTTTA
60 ATTA-GGTTGTTTAGTTTTA
6614192 TTATATCAAA
Statistics
Matches: 459, Mismatches: 33, Indels: 37
0.87 0.06 0.07
Matches are distributed among these distances:
85 203 0.44
86 193 0.42
87 34 0.07
88 1 0.00
90 5 0.01
92 19 0.04
93 4 0.01
ACGTcount: A:0.25, C:0.01, G:0.24, T:0.51
Consensus pattern (81 bp):
AATTTAGATTAGGTTTAGGGTTTTTAATTAATTTAGGTTAGATTAGGGTTTTCAATTAAATTAGG
TTGTTTAGTTTTAGTT
Found at i:6614256 original size:26 final size:25
Alignment explanation
Indices: 6614227--6614275 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
6614217 CTTAAAAAAT
6614227 TTCTATCCGTATTACATCAAATAAAC
1 TTCTAT-CGTATTACATCAAATAAAC
** *
6614253 TTCTATTTTATTATATCAAATAA
1 TTCTATCGTATTACATCAAATAA
6614276 TAAATTTAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 14 0.70
26 6 0.30
ACGTcount: A:0.39, C:0.16, G:0.02, T:0.43
Consensus pattern (25 bp):
TTCTATCGTATTACATCAAATAAAC
Found at i:6614413 original size:24 final size:24
Alignment explanation
Indices: 6614386--6614441 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
6614376 GGCGGCGGTT
*
6614386 GTTCTTCCTCCGGTGGTAATTGTG
1 GTTCTTCCTCCAGTGGTAATTGTG
**
6614410 GTTCTTCCTCCAGTGGTGGTTGTG
1 GTTCTTCCTCCAGTGGTAATTGTG
6614434 GTTCTTCC
1 GTTCTTCC
6614442 GGTTCGGCAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.05, C:0.23, G:0.29, T:0.43
Consensus pattern (24 bp):
GTTCTTCCTCCAGTGGTAATTGTG
Found at i:6615396 original size:7 final size:7
Alignment explanation
Indices: 6615386--6615410 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
6615376 TTATATACAT
6615386 AATACTA
1 AATACTA
6615393 AATACTA
1 AATACTA
6615400 AATACTA
1 AATACTA
6615407 AATA
1 AATA
6615411 TCAATCGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:6619508 original size:30 final size:31
Alignment explanation
Indices: 6619455--6619517 Score: 110
Period size: 30 Copynumber: 2.1 Consensus size: 31
6619445 GCCATTGATG
6619455 AAAATATAAAAAAATTTAAAATTATTTTAAA
1 AAAATATAAAAAAATTTAAAATTATTTTAAA
*
6619486 AAAATATAAAAAAA-TTATAATTATTTTAAA
1 AAAATATAAAAAAATTTAAAATTATTTTAAA
6619516 AA
1 AA
6619518 TGGATTTGAG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 17 0.55
31 14 0.45
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (31 bp):
AAAATATAAAAAAATTTAAAATTATTTTAAA
Found at i:6619566 original size:40 final size:40
Alignment explanation
Indices: 6619511--6619586 Score: 134
Period size: 40 Copynumber: 1.9 Consensus size: 40
6619501 TATAATTATT
6619511 TTAAAAATGGATTTGAGAGAATTTTGGAAGGAAATTAAAA
1 TTAAAAATGGATTTGAGAGAATTTTGGAAGGAAATTAAAA
* *
6619551 TTAAATATGGGTTTGAGAGAATTTTGGAAGGAAATT
1 TTAAAAATGGATTTGAGAGAATTTTGGAAGGAAATT
6619587 GAAAGAATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.42, C:0.00, G:0.25, T:0.33
Consensus pattern (40 bp):
TTAAAAATGGATTTGAGAGAATTTTGGAAGGAAATTAAAA
Found at i:6619588 original size:22 final size:22
Alignment explanation
Indices: 6619563--6619614 Score: 95
Period size: 22 Copynumber: 2.4 Consensus size: 22
6619553 AAATATGGGT
6619563 TTGAGAGAATTTTGGAAGGAAA
1 TTGAGAGAATTTTGGAAGGAAA
*
6619585 TTGAAAGAATTTTGGAAGGAAA
1 TTGAGAGAATTTTGGAAGGAAA
6619607 TTGAGAGA
1 TTGAGAGA
6619615 GAGGATTAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.42, C:0.00, G:0.31, T:0.27
Consensus pattern (22 bp):
TTGAGAGAATTTTGGAAGGAAA
Found at i:6640145 original size:109 final size:109
Alignment explanation
Indices: 6639952--6640155 Score: 336
Period size: 109 Copynumber: 1.9 Consensus size: 109
6639942 ATCTCCATCA
* ** * *
6639952 ATATCAATATTTTAGTTAGATTATTATTGTAGTCGAAGTGTTTTATTTGTGGTTGTTATGATTAA
1 ATATCAATATTTTAGTTAGATTATTATTATAGTCGAAGTACTTTATTTGCGGTTGTTATGACTAA
6640017 ATTGTAGTTCATTTCAATTTTTCTTTTTTGATAACAGTATCTTT
66 ATTGTAGTTCATTTCAATTTTTCTTTTTTGATAACAGTATCTTT
*
6640061 ATATCAATATTTTAGTTAGGTTATTATTATAGTCGAAGTACTTTATTTGCGGTTGTTATGACTAA
1 ATATCAATATTTTAGTTAGATTATTATTATAGTCGAAGTACTTTATTTGCGGTTGTTATGACTAA
* *
6640126 ATTGTAGTTCATTTTAATTTTTTTTTTTTG
66 ATTGTAGTTCATTTCAATTTTTCTTTTTTG
6640156 TGATAACGTG
Statistics
Matches: 87, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
109 87 1.00
ACGTcount: A:0.25, C:0.06, G:0.15, T:0.53
Consensus pattern (109 bp):
ATATCAATATTTTAGTTAGATTATTATTATAGTCGAAGTACTTTATTTGCGGTTGTTATGACTAA
ATTGTAGTTCATTTCAATTTTTCTTTTTTGATAACAGTATCTTT
Found at i:6642854 original size:23 final size:23
Alignment explanation
Indices: 6642828--6642872 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
6642818 AGGAGGATTA
*
6642828 AATTAAA-TTAAATAATTTAATGT
1 AATTAAACTT-AATAATTAAATGT
6642851 AATTAAACTTAATAATTAAATG
1 AATTAAACTTAATAATTAAATG
6642873 AAAAGCTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 18 0.90
24 2 0.10
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.40
Consensus pattern (23 bp):
AATTAAACTTAATAATTAAATGT
Found at i:6655884 original size:27 final size:27
Alignment explanation
Indices: 6655847--6655910 Score: 83
Period size: 27 Copynumber: 2.4 Consensus size: 27
6655837 TAGTATATGG
*
6655847 TAGTGGCGCCTATCTCAGAGGCGACAA
1 TAGTGGTGCCTATCTCAGAGGCGACAA
* * * *
6655874 TGGTGGTGCCTATCTGAGAGGCGCCAT
1 TAGTGGTGCCTATCTCAGAGGCGACAA
6655901 TAGTGGTGCC
1 TAGTGGTGCC
6655911 ATGTTGAGAG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.19, C:0.23, G:0.34, T:0.23
Consensus pattern (27 bp):
TAGTGGTGCCTATCTCAGAGGCGACAA
Found at i:6655931 original size:27 final size:26
Alignment explanation
Indices: 6655847--6655931 Score: 82
Period size: 27 Copynumber: 3.2 Consensus size: 26
6655837 TAGTATATGG
* *
6655847 TAGTGGCGCCTATCTCAGAGGCGACAA
1 TAGTGGTGCCTATCTGAGAGGCG-CAA
* *
6655874 TGGTGGTGCCTATCTGAGAGGCGCCAT
1 TAGTGGTGCCTATCTGAGAGGCG-CAA
*
6655901 TAGTGGTGCC-ATGTTGAGAGGCGCTAA
1 TAGTGGTGCCTAT-CTGAGAGGCGC-AA
6655928 TAGT
1 TAGT
6655932 CTTATTTTAT
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
26 3 0.06
27 45 0.94
ACGTcount: A:0.21, C:0.20, G:0.34, T:0.25
Consensus pattern (26 bp):
TAGTGGTGCCTATCTGAGAGGCGCAA
Found at i:6656023 original size:16 final size:15
Alignment explanation
Indices: 6655996--6656032 Score: 56
Period size: 16 Copynumber: 2.4 Consensus size: 15
6655986 ACAAAATCAA
6655996 ATAAAATTACATTAT
1 ATAAAATTACATTAT
*
6656011 GTAAAAGTTACATTAT
1 ATAAAA-TTACATTAT
6656027 ATAAAA
1 ATAAAA
6656033 ATTAAATGAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
15 5 0.26
16 14 0.74
ACGTcount: A:0.54, C:0.05, G:0.05, T:0.35
Consensus pattern (15 bp):
ATAAAATTACATTAT
Found at i:6656223 original size:60 final size:60
Alignment explanation
Indices: 6656150--6656271 Score: 190
Period size: 60 Copynumber: 2.0 Consensus size: 60
6656140 ATACTAAACT
* * * * * *
6656150 AAACACAACAATTTATAGCTTAATCCTAAATTACTAATAAATTAATTTTTAAATAATTAC
1 AAACACAAAAATTTATAACATAATCCTAAATTACTAAAAAATTAATTATAAAATAATTAC
6656210 AAACACAAAAATTTATAACATAATCCTAAATTACTAAAAAATTAATTATAAAATAATTAC
1 AAACACAAAAATTTATAACATAATCCTAAATTACTAAAAAATTAATTATAAAATAATTAC
6656270 AA
1 AA
6656272 TATTCATACA
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
60 56 1.00
ACGTcount: A:0.54, C:0.12, G:0.01, T:0.33
Consensus pattern (60 bp):
AAACACAAAAATTTATAACATAATCCTAAATTACTAAAAAATTAATTATAAAATAATTAC
Found at i:6656363 original size:61 final size:61
Alignment explanation
Indices: 6656293--6656436 Score: 270
Period size: 61 Copynumber: 2.4 Consensus size: 61
6656283 AAAATTACAA
* *
6656293 AATTACAATATTCATACAAAATACTAATCCAAAACTATAAATACAAAATTTATTATAAAAT
1 AATTACAATATTCATACAAAATACTAATCAAAAACTATAAATACAAAATTAATTATAAAAT
6656354 AATTACAATATTCATACAAAATACTAATCAAAAACTATAAATACAAAATTAATTATAAAAT
1 AATTACAATATTCATACAAAATACTAATCAAAAACTATAAATACAAAATTAATTATAAAAT
6656415 AATTACAATATTCATACAAAAT
1 AATTACAATATTCATACAAAAT
6656437 TATCCATTGG
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 81 1.00
ACGTcount: A:0.57, C:0.12, G:0.00, T:0.31
Consensus pattern (61 bp):
AATTACAATATTCATACAAAATACTAATCAAAAACTATAAATACAAAATTAATTATAAAAT
Found at i:6656504 original size:27 final size:27
Alignment explanation
Indices: 6656444--6656505 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
6656434 AATTATCCAT
* **
6656444 TGGCGCCTCCCTATGAGGCACTTTTAA
1 TGGCGCCTCCCTATGAGACACAATTAA
* *
6656471 TGACGCCTCCCTATGAGACACAATTAG
1 TGGCGCCTCCCTATGAGACACAATTAA
6656498 TGGCGCCT
1 TGGCGCCT
6656506 ACCTGACAGG
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.21, C:0.31, G:0.23, T:0.26
Consensus pattern (27 bp):
TGGCGCCTCCCTATGAGACACAATTAA
Found at i:6659374 original size:3 final size:3
Alignment explanation
Indices: 6659368--6659398 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
6659358 TGGTGGGGAA
*
6659368 GAT GAT GAT GAT GAT GAT GAT GAT TAT GAT G
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT G
6659399 GTGAGAGAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.32, C:0.00, G:0.32, T:0.35
Consensus pattern (3 bp):
GAT
Found at i:6660334 original size:3 final size:3
Alignment explanation
Indices: 6660326--6660351 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
6660316 TGTGTACCAG
6660326 AGA AGA AGA AGA AGA AGA AGA AGA AG
1 AGA AGA AGA AGA AGA AGA AGA AGA AG
6660352 CAGCAGCAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:6667522 original size:23 final size:23
Alignment explanation
Indices: 6667496--6667548 Score: 88
Period size: 23 Copynumber: 2.3 Consensus size: 23
6667486 CAAATTCCTC
6667496 ATGTAAAGAAGCATGACACAAAA
1 ATGTAAAGAAGCATGACACAAAA
*
6667519 ATGTTAAGAAGCATGACACAAAA
1 ATGTAAAGAAGCATGACACAAAA
*
6667542 GTGTAAA
1 ATGTAAA
6667549 CCAAGTGTGA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.53, C:0.11, G:0.19, T:0.17
Consensus pattern (23 bp):
ATGTAAAGAAGCATGACACAAAA
Found at i:6670107 original size:24 final size:26
Alignment explanation
Indices: 6670071--6670120 Score: 68
Period size: 24 Copynumber: 2.0 Consensus size: 26
6670061 TATGGTTTGA
*
6670071 TAAATGATAATCAACTATCAATTCAT
1 TAAATGATAATCAAATATCAATTCAT
*
6670097 TAAAT-AT-ATCAAATTTCAATTCAT
1 TAAATGATAATCAAATATCAATTCAT
6670121 CATATTCAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 15 0.68
25 2 0.09
26 5 0.23
ACGTcount: A:0.46, C:0.14, G:0.02, T:0.38
Consensus pattern (26 bp):
TAAATGATAATCAAATATCAATTCAT
Found at i:6670984 original size:10 final size:10
Alignment explanation
Indices: 6670971--6671013 Score: 54
Period size: 10 Copynumber: 4.4 Consensus size: 10
6670961 AAAATTAGCC
6670971 TAATTAACTA
1 TAATTAACTA
6670981 TAATTAACTA
1 TAATTAACTA
*
6670991 -AACTTAATTA
1 TAA-TTAACTA
6671001 TAATTAA-TA
1 TAATTAACTA
6671010 TAAT
1 TAAT
6671014 CAGTGGATGA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
9 8 0.27
10 20 0.67
11 2 0.07
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.42
Consensus pattern (10 bp):
TAATTAACTA
Found at i:6679452 original size:16 final size:16
Alignment explanation
Indices: 6679427--6679469 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
6679417 GTTGTCTGGG
6679427 TGTA-ACATACATACAT
1 TGTATACATACATAC-T
6679443 T-TATACATACATACT
1 TGTATACATACATACT
*
6679458 TGTATACTTACA
1 TGTATACATACA
6679470 AAGTCCAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
15 4 0.17
16 20 0.83
ACGTcount: A:0.40, C:0.19, G:0.05, T:0.37
Consensus pattern (16 bp):
TGTATACATACATACT
Found at i:6683393 original size:21 final size:21
Alignment explanation
Indices: 6683367--6683407 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
6683357 ATCTGCTCAA
* *
6683367 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
6683388 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
6683408 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:6691144 original size:46 final size:46
Alignment explanation
Indices: 6691073--6691269 Score: 353
Period size: 46 Copynumber: 4.3 Consensus size: 46
6691063 GAAATCAGTA
6691073 ACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGTG
1 ACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGTG
*
6691119 ACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTG
1 ACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGTG
*
6691165 ACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTAATCAAGTG
1 ACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGTG
*
6691211 ACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATC-AGGG
1 ACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGTG
6691256 AC-AAGTGATAAGTG
1 ACAAAGTGATAAGTG
6691270 ATCATACGTA
Statistics
Matches: 146, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
44 12 0.08
45 5 0.03
46 129 0.88
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.28
Consensus pattern (46 bp):
ACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGTG
Found at i:6693842 original size:21 final size:21
Alignment explanation
Indices: 6693783--6693849 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
6693773 GAAATAAAAA
*
6693783 TTTGAGAAACCCGAATGAGAT
1 TTTGAGAAACCCGGATGAGAT
*****
6693804 TTT-AGATTTATGGAATGAGAT
1 TTTGAGAAACCCGG-ATGAGAT
6693825 TTTGAGAAACCCGGATGAGAT
1 TTTGAGAAACCCGGATGAGAT
6693846 TTTG
1 TTTG
6693850 GAGGTAATGG
Statistics
Matches: 33, Mismatches: 11, Indels: 4
0.69 0.23 0.08
Matches are distributed among these distances:
20 4 0.12
21 24 0.73
22 5 0.15
ACGTcount: A:0.33, C:0.09, G:0.25, T:0.33
Consensus pattern (21 bp):
TTTGAGAAACCCGGATGAGAT
Found at i:6698455 original size:143 final size:147
Alignment explanation
Indices: 6698224--6698613 Score: 391
Period size: 159 Copynumber: 2.6 Consensus size: 147
6698214 TTAGTAAAGT
** * * ** *
6698224 TACATAAAATTTGAAATGTATTAATTTAGTGTATTTTTATTATATAAATTTAGTAAAAAATTCTC
1 TACATAATGTTTGAAATGTATTATTTTAGTG--TGTTT-TTATATAAATTTAGTAAAAAACCCTT
* * * * *
6698289 ATTTTGACCCTTTGTTCG-GTTTTTA-TTAC---TT-T-TAAAAAATATACTATTTTCGTGTCTA
63 ATTTTGGCCATTTGTTCGTATTTTTATTTACGTTTTATATAAAAAATATAATATTTTCGTAT-TA
*
6698347 T-TTATTTTATTTTATTTTAG
127 TATTATTTTATATTATTTTAG
6698367 TACATAATGTTTGAAATGTATTATTTTAGTGTGTTTTTATATAAATTTAGTAAAAAAAACCCTTA
1 TACATAATGTTTGAAATGTATTATTTTAGTGTGTTTTTATATAAATTTAGT--AAAAAACCCTTA
* * *
6698432 TTTTGGCCTTTTATTCGTATTTTTCTTATTTTCGGATTTTATTACTTTCAAAAAATATAATATTT
64 TTTTGGCCATTTGTTCGTA--TTT-TTATTTAC-G-TTTTA-TA---T-AAAAAATATAATATTT
*
6698497 TCGTATTTTATTATTTTATATTATTTTAG
119 TCGTATTATATTATTTTATATTATTTTAG
* *
6698526 TACATAATGTTTGAAATGTATTATTTTTGTGTGTTTTTTATATAAATTTAGTGAAAAACCCTTAT
1 TACATAATGTTTGAAATGTATTATTTTAGTGTG-TTTTTATATAAATTTAGTAAAAAACCCTTAT
*
6698591 TTTGGCAATTTGTTCGTATTTTT
65 TTTGGCCATTTGTTCGTATTTTT
6698614 CTCTTTTTTT
Statistics
Matches: 205, Mismatches: 21, Indels: 30
0.80 0.08 0.12
Matches are distributed among these distances:
140 15 0.07
141 4 0.02
142 23 0.11
143 28 0.14
145 3 0.01
146 3 0.01
147 3 0.01
152 2 0.01
154 1 0.00
155 2 0.01
156 3 0.01
158 30 0.15
159 70 0.34
160 18 0.09
ACGTcount: A:0.30, C:0.07, G:0.10, T:0.53
Consensus pattern (147 bp):
TACATAATGTTTGAAATGTATTATTTTAGTGTGTTTTTATATAAATTTAGTAAAAAACCCTTATT
TTGGCCATTTGTTCGTATTTTTATTTACGTTTTATATAAAAAATATAATATTTTCGTATTATATT
ATTTTATATTATTTTAG
Found at i:6698663 original size:159 final size:157
Alignment explanation
Indices: 6698309--6698664 Score: 475
Period size: 159 Copynumber: 2.2 Consensus size: 157
6698299 TTTGTTCGGT
* * * * *
6698309 TTTTATTACTTTTAAAAAATATACTATTTTCGT-GTCTATTTATTTTATTTTATTTTAGTACATA
1 TTTTATTACTTTCAAAAAATATAATATTTTC-TATTTTA-TTATTTTATATTATTTTAGTACATA
6698373 ATGTTTGAAATGTATTATTTTAGTGTGTTTTTATATAAATTTAGTAAAAAAAACCCTTATTTTGG
64 ATGTTTGAAATGTATTATTTTAGTGTGTTTTTATATAAATTTAGT-AAAAAAACCCTTATTTTGG
** *
6698438 CCTTTTATTCGTATTTTTCTTATTTTCGGA
128 CAATTTATTCGTATTTTTCTTATTTTCAGA
6698468 TTTTATTACTTTCAAAAAATATAATATTTTCGTATTTTATTATTTTATATTATTTTAGTACATAA
1 TTTTATTACTTTCAAAAAATATAATATTTTC-TATTTTATTATTTTATATTATTTTAGTACATAA
* *
6698533 TGTTTGAAATGTATTATTTTTGTGTGTTTTTTATATAAATTTAGT-GAAAAACCCTTATTTTGGC
65 TGTTTGAAATGTATTATTTTAGTGTG-TTTTTATATAAATTTAGTAAAAAAACCCTTATTTTGGC
* *
6698597 AATTTGTTCGTATTTTTCTCTTTTTTTTCAGA
129 AATTTATTCGTA-TTTT-TC-TTATTTTCAGA
** * *
6698629 TTTTATTACTTTCAGTAAATTTACTATTTT-TATTTT
1 TTTTATTACTTTCAAAAAATATAATATTTTCTATTTT
6698665 TTTTTATTTT
Statistics
Matches: 176, Mismatches: 16, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
158 27 0.15
159 91 0.52
160 23 0.13
161 35 0.20
ACGTcount: A:0.28, C:0.08, G:0.09, T:0.56
Consensus pattern (157 bp):
TTTTATTACTTTCAAAAAATATAATATTTTCTATTTTATTATTTTATATTATTTTAGTACATAAT
GTTTGAAATGTATTATTTTAGTGTGTTTTTATATAAATTTAGTAAAAAAACCCTTATTTTGGCAA
TTTATTCGTATTTTTCTTATTTTCAGA
Found at i:6698670 original size:10 final size:10
Alignment explanation
Indices: 6698655--6698689 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
6698645 AAATTTACTA
6698655 TTTTTATTTT
1 TTTTTATTTT
6698665 TTTTTATTTT
1 TTTTTATTTT
*
6698675 TTTCGTATTTT
1 TTT-TTATTTT
6698686 TTTT
1 TTTT
6698690 CCATAAACAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.09, C:0.03, G:0.03, T:0.86
Consensus pattern (10 bp):
TTTTTATTTT
Found at i:6702839 original size:20 final size:20
Alignment explanation
Indices: 6702814--6702853 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
6702804 AGTCTTTCTG
6702814 CGATTTCCCCTCATCCTTTC
1 CGATTTCCCCTCATCCTTTC
6702834 CGATTTCCCCTCATCCTTTC
1 CGATTTCCCCTCATCCTTTC
6702854 TTCATCTCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.10, C:0.45, G:0.05, T:0.40
Consensus pattern (20 bp):
CGATTTCCCCTCATCCTTTC
Found at i:6704486 original size:17 final size:17
Alignment explanation
Indices: 6704464--6704496 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
6704454 TTATTTTCTA
6704464 TATAAGTTTTCTAAATT
1 TATAAGTTTTCTAAATT
*
6704481 TATAAGTTTTGTAAAT
1 TATAAGTTTTCTAAAT
6704497 AATTATTCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.03, G:0.09, T:0.52
Consensus pattern (17 bp):
TATAAGTTTTCTAAATT
Found at i:6704526 original size:15 final size:15
Alignment explanation
Indices: 6704506--6704543 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
6704496 TAATTATTCT
6704506 AAATTTATTAGTATA
1 AAATTTATTAGTATA
* *
6704521 AAATTTAGTAGTATT
1 AAATTTATTAGTATA
6704536 AAATTTAT
1 AAATTTAT
6704544 AAGTTTTCTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.45, C:0.00, G:0.08, T:0.47
Consensus pattern (15 bp):
AAATTTATTAGTATA
Found at i:6704541 original size:60 final size:61
Alignment explanation
Indices: 6704475--6704623 Score: 185
Period size: 60 Copynumber: 2.5 Consensus size: 61
6704465 ATAAGTTTTC
6704475 TAAATTTATAAGTTTTGTAAATAATTATTCTAAATTTATTAGT-ATAAAATTTAGT-AGTAT
1 TAAATTTATAAGTTTTGTAAATAATTATTCTAAATTTATTAGTAATAAAATTTA-TAAGTAT
* * * * * *
6704535 TAAATTTATAAGTTTTCTAAAAAAGTGTTCTAGATTTATTATTAATAAAATTTATAAGTAT
1 TAAATTTATAAGTTTTGTAAATAATTATTCTAAATTTATTAGTAATAAAATTTATAAGTAT
* * * *
6704596 CAATTTTACACGTTTTGTAAATAATTAT
1 TAAATTTATAAGTTTTGTAAATAATTAT
6704624 ATATATTTTT
Statistics
Matches: 73, Mismatches: 14, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
60 38 0.52
61 35 0.48
ACGTcount: A:0.41, C:0.04, G:0.08, T:0.47
Consensus pattern (61 bp):
TAAATTTATAAGTTTTGTAAATAATTATTCTAAATTTATTAGTAATAAAATTTATAAGTAT
Found at i:6704860 original size:8 final size:7
Alignment explanation
Indices: 6704847--6704892 Score: 51
Period size: 7 Copynumber: 6.6 Consensus size: 7
6704837 TAACGTATAT
6704847 ATAATAAC
1 ATAAT-AC
6704855 ATAATA-
1 ATAATAC
*
6704861 A-ATTAC
1 ATAATAC
6704867 ATAATAC
1 ATAATAC
6704874 ATAATAAC
1 ATAAT-AC
6704882 ATAATAC
1 ATAATAC
6704889 ATAA
1 ATAA
6704893 CTTATATATA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
5 3 0.09
6 2 0.06
7 16 0.48
8 12 0.36
ACGTcount: A:0.61, C:0.11, G:0.00, T:0.28
Consensus pattern (7 bp):
ATAATAC
Found at i:6704880 original size:95 final size:95
Alignment explanation
Indices: 6704768--6705031 Score: 395
Period size: 95 Copynumber: 2.8 Consensus size: 95
6704758 AATCATTTGC
* * * *
6704768 TTACTTAATACATAATAACACAATGCATAA-TTGGTATATAAGCTTGCATAACTTACATAATAAC
1 TTACATAATACATAATAACATAATACATAACTT-ATATATAAGCTTGCATAACTTACATAATAAC
6704832 TTCCATAACGTATATATAATAACATAATAAA
65 TTCCATAACGTATATATAATAACATAATAAA
*
6704863 TTACATAATACATAATAACATAATACATAACTTATATATAAGCTTGTATAACTTACATAATAACT
1 TTACATAATACATAATAACATAATACATAACTTATATATAAGCTTGCATAACTTACATAATAACT
* * *** *
6704928 TTCATAACTTATATATAATCTGATAATACA
66 TCCATAACGTATATATAATAACATAATAAA
*
6704958 TTACATAATACATAATAACATAATACATAACTTATATTATAATCTTGCATAACTTACATAATAAC
1 TTACATAATACATAATAACATAATACATAACTTATA-TATAAGCTTGCATAACTTACATAATAAC
6705023 TTCCATAAC
65 TTCCATAAC
6705032 TTAATACACC
Statistics
Matches: 153, Mismatches: 14, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
95 117 0.76
96 36 0.24
ACGTcount: A:0.46, C:0.15, G:0.04, T:0.35
Consensus pattern (95 bp):
TTACATAATACATAATAACATAATACATAACTTATATATAAGCTTGCATAACTTACATAATAACT
TCCATAACGTATATATAATAACATAATAAA
Found at i:6704885 original size:15 final size:15
Alignment explanation
Indices: 6704847--6704892 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
6704837 TAACGTATAT
6704847 ATAATAACATAAT--
1 ATAATAACATAATAC
*
6704860 A-AATTACATAATAC
1 ATAATAACATAATAC
6704874 ATAATAACATAATAC
1 ATAATAACATAATAC
6704889 ATAA
1 ATAA
6704893 CTTATATATA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
12 10 0.36
13 1 0.04
14 1 0.04
15 16 0.57
ACGTcount: A:0.61, C:0.11, G:0.00, T:0.28
Consensus pattern (15 bp):
ATAATAACATAATAC
Found at i:6704914 original size:21 final size:20
Alignment explanation
Indices: 6704888--6704945 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 20
6704878 TAACATAATA
6704888 CATAACTTATATATAAGCTTGT
1 CATAACTTATATATAA-CTT-T
*
6704910 -ATAACTTACATAATAACTTT
1 CATAACTTATAT-ATAACTTT
6704930 CATAACTTATATATAA
1 CATAACTTATATATAA
6704946 TCTGATAATA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
20 5 0.16
21 23 0.72
22 4 0.12
ACGTcount: A:0.43, C:0.14, G:0.03, T:0.40
Consensus pattern (20 bp):
CATAACTTATATATAACTTT
Found at i:6704967 original size:12 final size:14
Alignment explanation
Indices: 6704950--6704986 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
6704940 ATATAATCTG
6704950 ATAATACAT-T-AC
1 ATAATACATATAAC
6704962 ATAATACATAATAAC
1 ATAATACAT-ATAAC
6704977 ATAATACATA
1 ATAATACATA
6704987 ACTTATATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 9 0.41
14 2 0.09
15 11 0.50
ACGTcount: A:0.57, C:0.14, G:0.00, T:0.30
Consensus pattern (14 bp):
ATAATACATATAAC
Found at i:6704980 original size:8 final size:7
Alignment explanation
Indices: 6704950--6704987 Score: 53
Period size: 7 Copynumber: 5.6 Consensus size: 7
6704940 ATATAATCTG
6704950 ATAATAC
1 ATAATAC
6704957 AT--TAC
1 ATAATAC
6704962 ATAATAC
1 ATAATAC
6704969 ATAATAAC
1 ATAAT-AC
6704977 ATAATAC
1 ATAATAC
6704984 ATAA
1 ATAA
6704988 CTTATATTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
5 5 0.18
7 16 0.57
8 7 0.25
ACGTcount: A:0.58, C:0.13, G:0.00, T:0.29
Consensus pattern (7 bp):
ATAATAC
Found at i:6704999 original size:27 final size:27
Alignment explanation
Indices: 6704930--6705000 Score: 65
Period size: 27 Copynumber: 2.7 Consensus size: 27
6704920 TAATAACTTT
***
6704930 CATAACTTATA-TATAATCTGATAATA
1 CATAACTTATATTATAATAACATAATA
* * *
6704956 CATTACATA-ATACATAATAACATAATA
1 CATAACTTATAT-TATAATAACATAATA
6704983 CATAACTTATATTATAAT
1 CATAACTTATATTATAAT
6705001 CTTGCATAAC
Statistics
Matches: 33, Mismatches: 9, Indels: 5
0.70 0.19 0.11
Matches are distributed among these distances:
25 1 0.03
26 7 0.21
27 23 0.70
28 2 0.06
ACGTcount: A:0.49, C:0.13, G:0.01, T:0.37
Consensus pattern (27 bp):
CATAACTTATATTATAATAACATAATA
Found at i:6705008 original size:22 final size:21
Alignment explanation
Indices: 6704983--6705034 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 21
6704973 TAACATAATA
* * *
6704983 CATAACTTATATTATAATCTTG
1 CATAACTTACATAATAA-CTTC
6705005 CATAACTTACATAATAACTTC
1 CATAACTTACATAATAACTTC
6705026 CATAACTTA
1 CATAACTTA
6705035 ATACACCACT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 12 0.44
22 15 0.56
ACGTcount: A:0.40, C:0.19, G:0.02, T:0.38
Consensus pattern (21 bp):
CATAACTTACATAATAACTTC
Found at i:6705133 original size:9 final size:9
Alignment explanation
Indices: 6705105--6705294 Score: 100
Period size: 9 Copynumber: 22.2 Consensus size: 9
6705095 CATATATAGA
*
6705105 AACTGACAT
1 AACTTACAT
* *
6705114 AAATTAAAT
1 AACTTACAT
6705123 AACTTACAT
1 AACTTACAT
6705132 AACTTACAT
1 AACTTACAT
* *
6705141 AAATTAAAT
1 AACTTACAT
*
6705150 TACTTACAT
1 AACTTACAT
6705159 AACTTACAT
1 AACTTACAT
*
6705168 TA--TACAT
1 AACTTACAT
*
6705175 AACCTT-CTT
1 AA-CTTACAT
6705184 AACTTACAT
1 AACTTACAT
* *
6705193 TA--TACAC
1 AACTTACAT
* *
6705200 GACTCACAT
1 AACTTACAT
6705209 AA-TTA-AT
1 AACTTACAT
* *
6705216 -ATTATACAC
1 AACT-TACAT
6705225 AACTTACAT
1 AACTTACAT
*
6705234 AA-TAAC-T
1 AACTTACAT
**
6705241 TTCTTACAT
1 AACTTACAT
6705250 AACTTACAT
1 AACTTACAT
*
6705259 TACTTACAGT
1 AACTTACA-T
6705269 -ACTTACAT
1 AACTTACAT
6705277 AA--TACAT
1 AACTTACAT
6705284 AACTTACAT
1 AACTTACAT
6705293 AA
1 AA
6705295 TACATAAAAA
Statistics
Matches: 133, Mismatches: 32, Indels: 32
0.68 0.16 0.16
Matches are distributed among these distances:
6 1 0.01
7 22 0.17
8 14 0.11
9 92 0.69
10 4 0.03
ACGTcount: A:0.44, C:0.19, G:0.02, T:0.35
Consensus pattern (9 bp):
AACTTACAT
Done.