Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62811768
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 736185 characters in sequence are not A, C, G, or T
File 25 of 211
Found at i:6705288 original size:16 final size:16
Alignment explanation
Indices: 6705245--6705301 Score: 71
Period size: 16 Copynumber: 3.4 Consensus size: 16
6705235 ATAACTTTCT
*
6705245 TACATAACTTACATTACT
1 TACATAACTTACA-TA-A
6705263 TACAGT-ACTTACATAA
1 TACA-TAACTTACATAA
6705279 TACATAACTTACATAA
1 TACATAACTTACATAA
6705295 TACATAA
1 TACATAA
6705302 AAATATATCA
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
15 1 0.03
16 21 0.58
17 2 0.06
18 11 0.31
19 1 0.03
ACGTcount: A:0.46, C:0.19, G:0.02, T:0.33
Consensus pattern (16 bp):
TACATAACTTACATAA
Found at i:6707313 original size:21 final size:21
Alignment explanation
Indices: 6707280--6707346 Score: 89
Period size: 21 Copynumber: 3.2 Consensus size: 21
6707270 AACTTAAAGA
*
6707280 AGAGGCGGCAGCGAGGGAAGC
1 AGAGGCTGCAGCGAGGGAAGC
*
6707301 AGCGGCTGCAGCGAGGGAAGC
1 AGAGGCTGCAGCGAGGGAAGC
* * *
6707322 GGAGGCTGCAGTGAGAGAAGC
1 AGAGGCTGCAGCGAGGGAAGC
6707343 AGAG
1 AGAG
6707347 CAGAGCAAAA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 39 1.00
ACGTcount: A:0.28, C:0.18, G:0.49, T:0.04
Consensus pattern (21 bp):
AGAGGCTGCAGCGAGGGAAGC
Found at i:6707706 original size:42 final size:42
Alignment explanation
Indices: 6707647--6707977 Score: 369
Period size: 42 Copynumber: 7.9 Consensus size: 42
6707637 GCGTTTTTGT
*
6707647 AAAAAAACGCTGCTAAAGAACATGTTCTTTAGCGGCGCTTAG
1 AAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAG
* *
6707689 AAAAAAATGCCGCTAAAGAACATGTTCTTTAACGGCGCTTAG
1 AAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAG
* *
6707731 TAAAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTA-
1 AAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAG
*
6707772 ATAAAAAACGCCGCTAAA-AACCATATTCTTTAGCGGCGCTTAG
1 A-AAAAAACGCCGCTAAAGAA-CATGTTCTTTAGCGGCGCTTAG
* * *
6707815 AGAAAAACGCCGCTAAATAACATGTTCTTTAGAGGCGCTTAG
1 AAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAG
* * * **
6707857 AAGAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGTTTTT
1 AAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAG
**** * * * * **
6707899 TCTTAAGCGCAGCTAAAGAACATGGTCTTTAGCGGCGTTTTT
1 AAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAG
* ** * *
6707941 TACTAAGCGCCGCTAAAGAATATGTTCTTTAGCGGCG
1 AAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCG
6707978 TTTTTGTTTG
Statistics
Matches: 251, Mismatches: 34, Indels: 8
0.86 0.12 0.03
Matches are distributed among these distances:
41 1 0.00
42 247 0.98
43 3 0.01
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (42 bp):
AAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAG
Found at i:6708408 original size:16 final size:17
Alignment explanation
Indices: 6708376--6708408 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
6708366 ACTATAATTA
6708376 TAATAAATATATAAAAT
1 TAATAAATATATAAAAT
*
6708393 TAATAATTAT-TAAAAT
1 TAATAAATATATAAAAT
6708409 CTATAAAGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
TAATAAATATATAAAAT
Found at i:6711768 original size:88 final size:87
Alignment explanation
Indices: 6711613--6711870 Score: 277
Period size: 88 Copynumber: 3.0 Consensus size: 87
6711603 ACAGAAGGGA
* * * * * *
6711613 GACCGCGTGCTCCGCAA-CGACCCAAAGTGAAACACGTATCTA-CCAGGCCTAAGCCCGCACGAG
1 GACCGCGTGCTCCGCAAGTGACCCAGAGTGAGACACGTGTCCAGCC-GGCCTAAGCCCGCACGAA
* *
6711676 ATGTCAGTACTAGGAATAGAAAG
65 ATGTCAGTACTAGGAACAAAAAG
*
6711699 GACCGCGTGCTCCGCAAGTGACCCAGAGTGAGACATGTGTCCAGCCGGCCTGAAGCCCGCACGAA
1 GACCGCGTGCTCCGCAAGTGACCCAGAGTGAGACACGTGTCCAGCCGGCCT-AAGCCCGCACGAA
*
6711764 ATGTCAGCACTAGGAACAAAAAG
65 ATGTCAGTACTAGGAACAAAAAG
* * * * * ** ** *
6711787 AACCGCGTGCACCACAGGTGATCCAGAGTGAGACACGTGTCCAGCAAGCCTAAAGCCTACACGGA
1 GACCGCGTGCTCCGCAAGTGACCCAGAGTGAGACACGTGTCCAGCCGGCCT-AAGCCCGCACGAA
* *
6711852 TTGTCAGTACTAAGAACAA
65 ATGTCAGTACTAGGAACAA
6711871 CGAAGTCAAG
Statistics
Matches: 144, Mismatches: 25, Indels: 4
0.83 0.14 0.02
Matches are distributed among these distances:
86 17 0.12
87 24 0.17
88 103 0.72
ACGTcount: A:0.32, C:0.29, G:0.26, T:0.14
Consensus pattern (87 bp):
GACCGCGTGCTCCGCAAGTGACCCAGAGTGAGACACGTGTCCAGCCGGCCTAAGCCCGCACGAAA
TGTCAGTACTAGGAACAAAAAG
Found at i:6715143 original size:37 final size:36
Alignment explanation
Indices: 6715078--6715147 Score: 88
Period size: 37 Copynumber: 1.9 Consensus size: 36
6715068 TGGTATCAAT
*
6715078 TTCACATTTTATCTTTTAAGATACTTTTTATTAAAAA
1 TTCACATTTTATCATTTAAGATACTTTTT-TTAAAAA
* *
6715115 TTCACATTTTTTACATTTAATATA-TTTTTTTAA
1 TTCACATTTTAT-CATTTAAGATACTTTTTTTAA
6715148 TTTCAAAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
36 4 0.14
37 16 0.55
38 9 0.31
ACGTcount: A:0.33, C:0.10, G:0.01, T:0.56
Consensus pattern (36 bp):
TTCACATTTTATCATTTAAGATACTTTTTTTAAAAA
Found at i:6715158 original size:19 final size:19
Alignment explanation
Indices: 6715121--6715158 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
6715111 AAAATTCACA
*
6715121 TTTTTTACATTTAATATAT
1 TTTTTTACATTTAAAATAT
6715140 TTTTTTA-ATTTCAAAATAT
1 TTTTTTACATTT-AAAATAT
6715159 ATAGTGACAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (19 bp):
TTTTTTACATTTAAAATAT
Found at i:6716365 original size:56 final size:55
Alignment explanation
Indices: 6716288--6716392 Score: 138
Period size: 56 Copynumber: 1.9 Consensus size: 55
6716278 TATAATTGAA
* * * * *
6716288 TATGTTATATTACCTTGTTTGGTTCATTTACTTAGAATGTAAGGTATTGTCCAAG
1 TATGTTACATTACCTTATTTGGTTCATTTACTTAAAATATAAAGTATTGTCCAAG
* *
6716343 TATGTTTACATTACTTTATTTGGTTCATTTAGTTAAAATATAAAGTATTG
1 TATG-TTACATTACCTTATTTGGTTCATTTACTTAAAATATAAAGTATTG
6716393 CTATTTGACA
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
55 4 0.10
56 38 0.90
ACGTcount: A:0.29, C:0.09, G:0.15, T:0.48
Consensus pattern (55 bp):
TATGTTACATTACCTTATTTGGTTCATTTACTTAAAATATAAAGTATTGTCCAAG
Found at i:6733705 original size:51 final size:51
Alignment explanation
Indices: 6733629--6733731 Score: 206
Period size: 51 Copynumber: 2.0 Consensus size: 51
6733619 ATTTGAATAA
6733629 TTTGTAAGAATTTCCAGATGAATTAGATCTATCAACCTGGTCGTCTAACTT
1 TTTGTAAGAATTTCCAGATGAATTAGATCTATCAACCTGGTCGTCTAACTT
6733680 TTTGTAAGAATTTCCAGATGAATTAGATCTATCAACCTGGTCGTCTAACTT
1 TTTGTAAGAATTTCCAGATGAATTAGATCTATCAACCTGGTCGTCTAACTT
6733731 T
1 T
6733732 CAGGCAAGAT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.38
Consensus pattern (51 bp):
TTTGTAAGAATTTCCAGATGAATTAGATCTATCAACCTGGTCGTCTAACTT
Found at i:6742800 original size:26 final size:24
Alignment explanation
Indices: 6742765--6742813 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
6742755 ATTTTATTGG
6742765 ATTTTAAATTTATGTTTATATTTTAT
1 ATTTTAAATTTA-GTTTAT-TTTTAT
*
6742791 ATTTTCAATTTAGTTTATTTTTA
1 ATTTTAAATTTAGTTTATTTTTA
6742814 GTAAGAACTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 5 0.23
25 6 0.27
26 11 0.50
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.65
Consensus pattern (24 bp):
ATTTTAAATTTAGTTTATTTTTAT
Found at i:6748034 original size:14 final size:14
Alignment explanation
Indices: 6748011--6748050 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
6748001 ACAGAAAAGT
*
6748011 AAAACATTTTCCGG
1 AAAACATTTTACGG
*
6748025 AAATCATTTTACGG
1 AAAACATTTTACGG
6748039 AAAACATTTTAC
1 AAAACATTTTAC
6748051 TGGCAATCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.33
Consensus pattern (14 bp):
AAAACATTTTACGG
Found at i:6754351 original size:17 final size:17
Alignment explanation
Indices: 6754329--6754381 Score: 63
Period size: 17 Copynumber: 3.1 Consensus size: 17
6754319 TTATTTTAAA
*
6754329 TAAAAATAAATATTATT
1 TAAAAATAAATATGATT
*
6754346 TAAAAATAAGTA-GATT
1 TAAAAATAAATATGATT
*
6754362 AAGAAAATAAATATGATT
1 TA-AAAATAAATATGATT
6754380 TA
1 TA
6754382 TTTTTATAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
16 4 0.14
17 20 0.69
18 5 0.17
ACGTcount: A:0.58, C:0.00, G:0.08, T:0.34
Consensus pattern (17 bp):
TAAAAATAAATATGATT
Found at i:6754511 original size:20 final size:19
Alignment explanation
Indices: 6754486--6754524 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
6754476 GGCATTATTT
6754486 TTATTTAAAATAAATAAATA
1 TTATTTAAAA-AAATAAATA
*
6754506 TTATTTAGAAAAATAAATA
1 TTATTTAAAAAAATAAATA
6754525 GATTAAGCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (19 bp):
TTATTTAAAAAAATAAATA
Found at i:6755566 original size:29 final size:28
Alignment explanation
Indices: 6755511--6755566 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
6755501 AGCTTGATAG
* * *
6755511 GTTTTATATTTTTAGTTAGCGAAAACAA
1 GTTTTATATTTTTAATTAACAAAAACAA
*
6755539 GTTTTATATTTTTAATTAATAATAAACA
1 GTTTTATATTTTTAATTAACAA-AAACA
6755567 TTTTAAATAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
28 18 0.78
29 5 0.22
ACGTcount: A:0.39, C:0.05, G:0.09, T:0.46
Consensus pattern (28 bp):
GTTTTATATTTTTAATTAACAAAAACAA
Found at i:6769654 original size:28 final size:26
Alignment explanation
Indices: 6769603--6769654 Score: 68
Period size: 28 Copynumber: 1.9 Consensus size: 26
6769593 CAATGGCATA
**
6769603 GAAATAATATAAAAAAATGAATAAAC
1 GAAATAATATAAAAAAAACAATAAAC
6769629 GAAATTAATATACAAAAAAACAATAA
1 GAAA-TAATATA-AAAAAAACAATAA
6769655 TCCATGACAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 4 0.18
27 7 0.32
28 11 0.50
ACGTcount: A:0.69, C:0.06, G:0.06, T:0.19
Consensus pattern (26 bp):
GAAATAATATAAAAAAAACAATAAAC
Found at i:6770252 original size:17 final size:17
Alignment explanation
Indices: 6770230--6770264 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
6770220 TAGGAAATAA
* *
6770230 AAAATGTATATGTATAT
1 AAAATGTAAATATATAT
6770247 AAAATGTAAATATATAT
1 AAAATGTAAATATATAT
6770264 A
1 A
6770265 TGTATATAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.54, C:0.00, G:0.09, T:0.37
Consensus pattern (17 bp):
AAAATGTAAATATATAT
Found at i:6770760 original size:23 final size:22
Alignment explanation
Indices: 6770730--6770772 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
6770720 AAATTAAATC
*
6770730 TCTAAGATTATATAATCATATAT
1 TCTAAGATTACAT-ATCATATAT
6770753 TCTAAGATTACATATCATAT
1 TCTAAGATTACATATCATAT
6770773 CTAAGATTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.42, C:0.12, G:0.05, T:0.42
Consensus pattern (22 bp):
TCTAAGATTACATATCATATAT
Found at i:6770777 original size:19 final size:22
Alignment explanation
Indices: 6770730--6770780 Score: 63
Period size: 23 Copynumber: 2.4 Consensus size: 22
6770720 AAATTAAATC
*
6770730 TCTAAGATTATATAATCATATAT
1 TCTAAGATTACATAATCA-ATAT
6770753 TCTAAGATTACAT-ATC-ATA-
1 TCTAAGATTACATAATCAATAT
6770772 TCTAAGATT
1 TCTAAGATT
6770781 GTATATCCTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
19 9 0.33
20 3 0.11
22 3 0.11
23 12 0.44
ACGTcount: A:0.41, C:0.12, G:0.06, T:0.41
Consensus pattern (22 bp):
TCTAAGATTACATAATCAATAT
Found at i:6770786 original size:19 final size:21
Alignment explanation
Indices: 6770730--6770787 Score: 66
Period size: 19 Copynumber: 2.8 Consensus size: 21
6770720 AAATTAAATC
6770730 TCTAAGATTATATAATCATATAT
1 TCTAAGATTATAT-ATCA-ATAT
*
6770753 TCTAAGATTACATATC-ATA-
1 TCTAAGATTATATATCAATAT
*
6770772 TCTAAGATTGTATATC
1 TCTAAGATTATATATC
6770788 CTTGAAGATT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
19 14 0.44
20 3 0.09
22 3 0.09
23 12 0.38
ACGTcount: A:0.40, C:0.12, G:0.07, T:0.41
Consensus pattern (21 bp):
TCTAAGATTATATATCAATAT
Found at i:6772179 original size:17 final size:17
Alignment explanation
Indices: 6772157--6772206 Score: 50
Period size: 17 Copynumber: 2.9 Consensus size: 17
6772147 TAAAATAAAA
6772157 TTTTAAATAGTTTTAAC
1 TTTTAAATAGTTTTAAC
**
6772174 TTTTAAA-ATGTTTTAGT
1 TTTTAAATA-GTTTTAAC
6772191 TTTTAACATA-TTTTAA
1 TTTTAA-ATAGTTTTAA
6772207 AAAATTTATT
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
16 1 0.04
17 24 0.89
18 1 0.04
19 1 0.04
ACGTcount: A:0.34, C:0.04, G:0.06, T:0.56
Consensus pattern (17 bp):
TTTTAAATAGTTTTAAC
Found at i:6777916 original size:26 final size:26
Alignment explanation
Indices: 6777866--6777950 Score: 89
Period size: 26 Copynumber: 3.3 Consensus size: 26
6777856 ACCCAAACCA
* * * *
6777866 GCGACCACAACTCACTAGACCCATTG
1 GCGACCCCAACTCGCTAGGCTCATTG
* * * *
6777892 GCGACCCCAACTTGCTATGTTCATTC
1 GCGACCCCAACTCGCTAGGCTCATTG
6777918 GCGACCCCAACTCGCTAGGCTCATTG
1 GCGACCCCAACTCGCTAGGCTCATTG
*
6777944 ACGACCC
1 GCGACCC
6777951 AAGCTCGGCA
Statistics
Matches: 46, Mismatches: 13, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.24, C:0.39, G:0.18, T:0.20
Consensus pattern (26 bp):
GCGACCCCAACTCGCTAGGCTCATTG
Found at i:6778919 original size:19 final size:19
Alignment explanation
Indices: 6778897--6778935 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
6778887 CAGTTAAGGG
*
6778897 TAATTAACGATTTAATTGA
1 TAATTAACGATGTAATTGA
**
6778916 TAATTAGGGATGTAATTGA
1 TAATTAACGATGTAATTGA
6778935 T
1 T
6778936 CATAGGCCGG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.38, C:0.03, G:0.18, T:0.41
Consensus pattern (19 bp):
TAATTAACGATGTAATTGA
Found at i:6785355 original size:41 final size:40
Alignment explanation
Indices: 6785304--6785383 Score: 106
Period size: 41 Copynumber: 2.0 Consensus size: 40
6785294 CATGTTAACA
* * * *
6785304 CATATCGATGCCACTGTCCGAGATAGGGTCTTATACGAAT
1 CATATCGATGCCAATGTCCCAGACAGGGTCTTACACGAAT
*
6785344 CATATACGATGCCAATGTCCCAGACATGGTCTTACACGAA
1 CATAT-CGATGCCAATGTCCCAGACAGGGTCTTACACGAA
6785384 ATCACACCTC
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
40 5 0.15
41 29 0.85
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (40 bp):
CATATCGATGCCAATGTCCCAGACAGGGTCTTACACGAAT
Found at i:6785565 original size:31 final size:31
Alignment explanation
Indices: 6785529--6785659 Score: 142
Period size: 31 Copynumber: 4.3 Consensus size: 31
6785519 ATATACATAT
*
6785529 TCATATACTAATCAAATTCGACAATGTATAA
1 TCATATACTAATCAAATTCGGCAATGTATAA
** * *
6785560 TCATATAAAAATC-AATTTGGCAATGTAGAA
1 TCATATACTAATCAAATTCGGCAATGTATAA
* *
6785590 CCATATA-TGAATCAAGTTCGGCAATGTATAA
1 TCATATACT-AATCAAATTCGGCAATGTATAA
*
6785621 TCATAT-CCAAGTCAAATTCGGCAATGTATAA
1 TCATATACTAA-TCAAATTCGGCAATGTATAA
*
6785652 CCATATAC
1 TCATATAC
6785660 GAATTAATTT
Statistics
Matches: 81, Mismatches: 14, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
30 26 0.32
31 54 0.67
32 1 0.01
ACGTcount: A:0.42, C:0.17, G:0.11, T:0.30
Consensus pattern (31 bp):
TCATATACTAATCAAATTCGGCAATGTATAA
Found at i:6785603 original size:61 final size:62
Alignment explanation
Indices: 6785530--6785663 Score: 173
Period size: 61 Copynumber: 2.2 Consensus size: 62
6785520 TATACATATT
*
6785530 CATATACT-AATCAAATTCGACAATGTATAATCATATAAAAATC-AATTTGGCAATGTAGAAC
1 CATATA-TGAATCAAATTCGACAATGTATAATCATATAAAAATCAAATTCGGCAATGTAGAAC
* * ** * *
6785591 CATATATGAATCAAGTTCGGCAATGTATAATCATATCCAAGTCAAATTCGGCAATGTATAAC
1 CATATATGAATCAAATTCGACAATGTATAATCATATAAAAATCAAATTCGGCAATGTAGAAC
*
6785653 CATATACGAAT
1 CATATATGAAT
6785664 TAATTTGGGA
Statistics
Matches: 63, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
60 1 0.02
61 36 0.57
62 26 0.41
ACGTcount: A:0.43, C:0.16, G:0.12, T:0.29
Consensus pattern (62 bp):
CATATATGAATCAAATTCGACAATGTATAATCATATAAAAATCAAATTCGGCAATGTAGAAC
Found at i:6785712 original size:92 final size:92
Alignment explanation
Indices: 6785506--6785724 Score: 212
Period size: 92 Copynumber: 2.4 Consensus size: 92
6785496 CCAATGGTCA
* * *
6785506 AATCAATTT-AACAATATACATATTCATATACTAA-TCAAATTCGACAATGTATAATCATATAAA
1 AATCAATTTCAACAATAT--ATAATCATAT-CCAAGTCAAATTCGACAATGTATAACCATATAAA
6785569 AATCAATTTGGCAATGTAGAACCATATATG
63 AATCAATTTGGCAATGTAGAACCATATATG
* ** * * **
6785599 AATCAAGTTCGGCAATGTATAATCATATCCAAGTCAAATTCGGCAATGTATAACCATATACGAAT
1 AATCAATTTCAACAATATATAATCATATCCAAGTCAAATTCGACAATGTATAACCATATAAAAAT
* * * *
6785664 TAATTTGGGAACT-TATATCCATATACT-
66 CAATTTGGCAA-TGTAGAACCATATA-TG
* * *
6785691 ATTCAATTTCAACAATATATAACCATATACAAGT
1 AATCAATTTCAACAATATATAATCATATCCAAGT
6785725 TAATTTCAGT
Statistics
Matches: 101, Mismatches: 21, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
91 3 0.03
92 83 0.82
93 10 0.10
94 5 0.05
ACGTcount: A:0.43, C:0.16, G:0.09, T:0.32
Consensus pattern (92 bp):
AATCAATTTCAACAATATATAATCATATCCAAGTCAAATTCGACAATGTATAACCATATAAAAAT
CAATTTGGCAATGTAGAACCATATATG
Found at i:6785793 original size:14 final size:14
Alignment explanation
Indices: 6785774--6785802 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
6785764 CCCGGGACCA
6785774 AATACATCAGGCCC
1 AATACATCAGGCCC
6785788 AATACATCAGGCCC
1 AATACATCAGGCCC
6785802 A
1 A
6785803 CCTAGACCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.34, G:0.14, T:0.14
Consensus pattern (14 bp):
AATACATCAGGCCC
Found at i:6790945 original size:15 final size:15
Alignment explanation
Indices: 6790925--6790958 Score: 54
Period size: 13 Copynumber: 2.4 Consensus size: 15
6790915 TTTAAACCTT
6790925 ACCACTCTTTCTAAA
1 ACCACTCTTTCTAAA
6790940 ACCA--CTTTCTAAA
1 ACCACTCTTTCTAAA
6790953 ACCACT
1 ACCACT
6790959 TGACCTAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 4
0.81 0.00 0.19
Matches are distributed among these distances:
13 13 0.76
15 4 0.24
ACGTcount: A:0.35, C:0.35, G:0.00, T:0.29
Consensus pattern (15 bp):
ACCACTCTTTCTAAA
Found at i:6790949 original size:13 final size:13
Alignment explanation
Indices: 6790931--6790959 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
6790921 CCTTACCACT
6790931 CTTTCTAAAACCA
1 CTTTCTAAAACCA
6790944 CTTTCTAAAACCA
1 CTTTCTAAAACCA
6790957 CTT
1 CTT
6790960 GACCTAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.34, C:0.31, G:0.00, T:0.34
Consensus pattern (13 bp):
CTTTCTAAAACCA
Found at i:6790999 original size:34 final size:34
Alignment explanation
Indices: 6790956--6791026 Score: 142
Period size: 34 Copynumber: 2.1 Consensus size: 34
6790946 TTCTAAAACC
6790956 ACTTGACCTAATAAATCATTATAAAACACAAATT
1 ACTTGACCTAATAAATCATTATAAAACACAAATT
6790990 ACTTGACCTAATAAATCATTATAAAACACAAATT
1 ACTTGACCTAATAAATCATTATAAAACACAAATT
6791024 ACT
1 ACT
6791027 AATTCAAAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.49, C:0.18, G:0.03, T:0.30
Consensus pattern (34 bp):
ACTTGACCTAATAAATCATTATAAAACACAAATT
Found at i:6793728 original size:50 final size:50
Alignment explanation
Indices: 6793669--6793830 Score: 175
Period size: 50 Copynumber: 3.2 Consensus size: 50
6793659 AGCCGTTGTA
* * * *
6793669 GCTTTAATCTTTTTAATTGCAATATCGGGGAAGCAGGATTCACCGATGTG
1 GCTTTAATCTTTTTAACTGCAATGTCGGGGAAGTAAGATTCACCGATGTG
** ** * * * *
6793719 GCTTTAATCTGCTCCACTGC-ATCGCCTGGGG-AGATAAGATTCACTGTTGTA
1 GCTTTAATCTTTTTAACTGCAAT-GTC-GGGGAAG-TAAGATTCACCGATGTG
6793770 GCTTTAATCTTTTTAACTGCAATGTCGGGGAAGTAAGATTCACCGATGTG
1 GCTTTAATCTTTTTAACTGCAATGTCGGGGAAGTAAGATTCACCGATGTG
6793820 GCTTTAATCTT
1 GCTTTAATCTT
6793831 CTCCGCTACT
Statistics
Matches: 87, Mismatches: 20, Indels: 10
0.74 0.17 0.09
Matches are distributed among these distances:
49 2 0.02
50 47 0.54
51 36 0.41
52 2 0.02
ACGTcount: A:0.24, C:0.19, G:0.23, T:0.35
Consensus pattern (50 bp):
GCTTTAATCTTTTTAACTGCAATGTCGGGGAAGTAAGATTCACCGATGTG
Found at i:6793760 original size:51 final size:50
Alignment explanation
Indices: 6793694--6793834 Score: 151
Period size: 51 Copynumber: 2.8 Consensus size: 50
6793684 ATTGCAATAT
* * *
6793694 CGGGGAAGCAGGATTCACCGATGTGGCTTTAATCTGCTCCACTGC-ATCGC
1 CGGGGAAGTAAGATTCACCGATGTGGCTTTAATCTTCTCCACTGCAAT-GC
* * * * ** *
6793744 CTGGGG-AGATAAGATTCACTGTTGTAGCTTTAATCTTTTTAACTGCAATGT
1 C-GGGGAAG-TAAGATTCACCGATGTGGCTTTAATCTTCTCCACTGCAATGC
6793795 CGGGGAAGTAAGATTCACCGATGTGGCTTTAATCTTCTCC
1 CGGGGAAGTAAGATTCACCGATGTGGCTTTAATCTTCTCC
6793835 GCTACTGCTT
Statistics
Matches: 71, Mismatches: 16, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
50 33 0.46
51 36 0.51
52 2 0.03
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.31
Consensus pattern (50 bp):
CGGGGAAGTAAGATTCACCGATGTGGCTTTAATCTTCTCCACTGCAATGC
Found at i:6796727 original size:35 final size:35
Alignment explanation
Indices: 6796685--6796768 Score: 134
Period size: 35 Copynumber: 2.4 Consensus size: 35
6796675 GTATAAATTC
6796685 ATGAATAATTATTTGTACCATATGATTATGAATGA
1 ATGAATAATTATTTGTACCATATGATTATGAATGA
6796720 ATGAATAA-TAGTTTGTACCATATGATTATGAATGA
1 ATGAATAATTA-TTTGTACCATATGATTATGAATGA
* *
6796755 ATGGATAATCATTT
1 ATGAATAATTATTT
6796769 AGAAGAAAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
34 2 0.04
35 42 0.93
36 1 0.02
ACGTcount: A:0.39, C:0.06, G:0.15, T:0.39
Consensus pattern (35 bp):
ATGAATAATTATTTGTACCATATGATTATGAATGA
Found at i:6812180 original size:24 final size:24
Alignment explanation
Indices: 6812132--6812180 Score: 57
Period size: 24 Copynumber: 2.0 Consensus size: 24
6812122 GTAAATATCC
*
6812132 TTTAAAATAATTATTTATTTTATT
1 TTTAAAATAATTATTTATTTAATT
6812156 TTTAATAATAATCT-TTT-TTTAATT
1 TTTAA-AATAAT-TATTTATTTAATT
6812180 T
1 T
6812181 ACAAAGCATT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
24 12 0.55
25 9 0.41
26 1 0.05
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (24 bp):
TTTAAAATAATTATTTATTTAATT
Found at i:6820686 original size:15 final size:15
Alignment explanation
Indices: 6820666--6820696 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
6820656 TCCAAATTGT
*
6820666 TTGTTGAAGCTTCCA
1 TTGTTGAAGATTCCA
6820681 TTGTTGAAGATTCCA
1 TTGTTGAAGATTCCA
6820696 T
1 T
6820697 AAAACATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.16, G:0.19, T:0.42
Consensus pattern (15 bp):
TTGTTGAAGATTCCA
Found at i:6822583 original size:16 final size:16
Alignment explanation
Indices: 6822562--6822600 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
6822552 AACGTATACA
6822562 TATATATACATACTTT
1 TATATATACATACTTT
*
6822578 TATATATACATGCTTT
1 TATATATACATACTTT
*
6822594 CATATAT
1 TATATAT
6822601 CTCCATAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.36, C:0.13, G:0.03, T:0.49
Consensus pattern (16 bp):
TATATATACATACTTT
Found at i:6822600 original size:34 final size:35
Alignment explanation
Indices: 6822560--6822637 Score: 88
Period size: 34 Copynumber: 2.3 Consensus size: 35
6822550 ATAACGTATA
* *
6822560 CATATATATACATACTTTTATATATACATGC-TTT
1 CATATATATACATAATTTTATATATACATGCATAT
* * * *
6822594 CATATATCTCCATAATTTTATGTATATATGCATAT
1 CATATATATACATAATTTTATATATACATGCATAT
6822629 -ATATATATA
1 CATATATATA
6822638 TATATATATC
Statistics
Matches: 35, Mismatches: 8, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
34 33 0.94
35 2 0.06
ACGTcount: A:0.37, C:0.13, G:0.04, T:0.46
Consensus pattern (35 bp):
CATATATATACATAATTTTATATATACATGCATAT
Found at i:6825661 original size:5 final size:5
Alignment explanation
Indices: 6825636--6825685 Score: 59
Period size: 5 Copynumber: 10.0 Consensus size: 5
6825626 TATGTTTTTA
*
6825636 TATAT T-TAT TATTAA TATAT TATAT TATAT TATAT TATTAT TATA- TATAT
1 TATAT TATAT TA-TAT TATAT TATAT TATAT TATAT TA-TAT TATAT TATAT
6825686 GACAAAGAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
4 8 0.21
5 22 0.56
6 9 0.23
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATAT
Found at i:6825661 original size:13 final size:15
Alignment explanation
Indices: 6825633--6825685 Score: 76
Period size: 15 Copynumber: 3.7 Consensus size: 15
6825623 AATTATGTTT
6825633 TTATATAT-TTATTA
1 TTATATATATTATTA
6825647 TTA-ATATATTA-TA
1 TTATATATATTATTA
6825660 TTATATTATATTATTA
1 TTATA-TATATTATTA
6825676 TTATATATAT
1 TTATATATAT
6825686 GACAAAGAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
13 9 0.26
14 7 0.20
15 12 0.34
16 7 0.20
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (15 bp):
TTATATATATTATTA
Found at i:6825751 original size:40 final size:41
Alignment explanation
Indices: 6825697--6825789 Score: 143
Period size: 40 Copynumber: 2.3 Consensus size: 41
6825687 ACAAAGAAAA
*
6825697 AAAGAAAAGAAACAGAGAGCAAAACAAAACAGAGAAGGGA-G
1 AAAG-AAAGAAACAGAGAGCAAAACAAAACAGAGAAGGAAGG
*
6825738 AAAGAAAGAAACAGAGAGCAAAACGAAACAGAGAAGGAAGG
1 AAAGAAAGAAACAGAGAGCAAAACAAAACAGAGAAGGAAGG
*
6825779 AAGGAAAGAAA
1 AAAGAAAGAAA
6825790 GAAAGAAAAG
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
40 33 0.69
41 15 0.31
ACGTcount: A:0.63, C:0.09, G:0.28, T:0.00
Consensus pattern (41 bp):
AAAGAAAGAAACAGAGAGCAAAACAAAACAGAGAAGGAAGG
Found at i:6827204 original size:41 final size:39
Alignment explanation
Indices: 6827156--6827267 Score: 120
Period size: 37 Copynumber: 2.9 Consensus size: 39
6827146 TCGACCTTGA
6827156 GTCGATGAGACACTGGGTGTCATACTATTACTTCGGATAG
1 GTCGATGAGACACTGGGTGTCA-ACTATTACTTCGGATAG
* ** ** * *
6827196 ATTCGATGAGGTACTGGGTACCAAC--TTACTTCGGCTTG
1 -GTCGATGAGACACTGGGTGTCAACTATTACTTCGGATAG
*
6827234 GTCGATGAGACACTGGGTGTCAACTATTGCTTCG
1 GTCGATGAGACACTGGGTGTCAACTATTACTTCG
6827268 AACTATCCGA
Statistics
Matches: 56, Mismatches: 13, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
37 19 0.34
38 11 0.20
39 7 0.12
40 2 0.04
41 17 0.30
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (39 bp):
GTCGATGAGACACTGGGTGTCAACTATTACTTCGGATAG
Found at i:6827249 original size:37 final size:40
Alignment explanation
Indices: 6827142--6827251 Score: 109
Period size: 41 Copynumber: 2.8 Consensus size: 40
6827132 AGTTCAGGGA
* **
6827142 TACTTCGACCTTGAGTCGATGAGACACTGGGTGTCATACTAT
1 TACTTCG-GCTTGAGTCGATGAGACACTGGGTACCATAC-AT
* * * **
6827184 TACTTCGGATAGATTCGATGAGGTACTGGGTACCA-AC-T
1 TACTTCGGCTTGAGTCGATGAGACACTGGGTACCATACAT
6827222 TACTTCGGCTTG-GTCGATGAGACACTGGGT
1 TACTTCGGCTTGAGTCGATGAGACACTGGGT
6827252 GTCAACTATT
Statistics
Matches: 55, Mismatches: 13, Indels: 5
0.75 0.18 0.07
Matches are distributed among these distances:
37 15 0.27
38 11 0.20
40 2 0.04
41 20 0.36
42 7 0.13
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (40 bp):
TACTTCGGCTTGAGTCGATGAGACACTGGGTACCATACAT
Found at i:6827258 original size:37 final size:38
Alignment explanation
Indices: 6827142--6827258 Score: 119
Period size: 37 Copynumber: 3.0 Consensus size: 38
6827132 AGTTCAGGGA
*
6827142 TACTTCGACCTTGAGTCGATGAGACACTGGGTGTCATACTAT
1 TACTTCG-GCTTGAGTCGATGAGACACTGGGTGTCA-AC--T
* * * ** **
6827184 TACTTCGGATAGATTCGATGAGGTACTGGGTACCAACT
1 TACTTCGGCTTGAGTCGATGAGACACTGGGTGTCAACT
6827222 TACTTCGGCTTG-GTCGATGAGACACTGGGTGTCAACT
1 TACTTCGGCTTGAGTCGATGAGACACTGGGTGTCAACT
6827259 ATTGCTTCGA
Statistics
Matches: 60, Mismatches: 15, Indels: 5
0.75 0.19 0.06
Matches are distributed among these distances:
37 20 0.33
38 11 0.18
40 2 0.03
41 20 0.33
42 7 0.12
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (38 bp):
TACTTCGGCTTGAGTCGATGAGACACTGGGTGTCAACT
Found at i:6828317 original size:47 final size:46
Alignment explanation
Indices: 6828243--6828391 Score: 141
Period size: 47 Copynumber: 3.2 Consensus size: 46
6828233 GGGAGTTTAG
*
6828243 CGTGCTCTCTGAT-TATTAGCACATCAGTGCTCTCTGTTTAGCACAT
1 CGTGCTCTCTGATAT-TTAGCACGTCAGTGCTCTCTGTTTAGCACAT
6828289 CGGTGCTCTCTGATATTTAGCACGTCAGTGCTCTCTGAATATTAG--CA-
1 C-GTGCTCTCTGATATTTAGCACGTCAGTGCTCTCTG--T-TTAGCACAT
* * *
6828336 C--GCTCTCTGATCA-CTAGCACGTTAGTGCTCTCCGTTTAGCACATT
1 CGTGCTCTCTGAT-ATTTAGCACGTCAGTGCTCTCTGTTTAGCACA-T
*
6828381 TGTGCTCTCTG
1 CGTGCTCTCTG
6828392 TACAGTCCCG
Statistics
Matches: 86, Mismatches: 5, Indels: 23
0.75 0.04 0.20
Matches are distributed among these distances:
41 4 0.05
42 1 0.01
43 2 0.02
44 28 0.33
45 1 0.01
46 1 0.01
47 41 0.48
48 3 0.03
49 1 0.01
50 4 0.05
ACGTcount: A:0.18, C:0.27, G:0.19, T:0.36
Consensus pattern (46 bp):
CGTGCTCTCTGATATTTAGCACGTCAGTGCTCTCTGTTTAGCACAT
Found at i:6828337 original size:25 final size:24
Alignment explanation
Indices: 6828244--6828336 Score: 127
Period size: 25 Copynumber: 3.8 Consensus size: 24
6828234 GGAGTTTAGC
6828244 GTGCTCTCTGATTATTAGCACATCA
1 GTGCTCTCTGA-TATTAGCACATCA
*
6828269 GTGCTCTCTG-T-TTAGCACATCG
1 GTGCTCTCTGATATTAGCACATCA
*
6828291 GTGCTCTCTGATATTTAGCACGTCA
1 GTGCTCTCTGATA-TTAGCACATCA
6828316 GTGCTCTCTGAATATTAGCAC
1 GTGCTCTCTG-ATATTAGCAC
6828337 GCTCTCTGAT
Statistics
Matches: 61, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
22 20 0.33
23 2 0.03
25 36 0.59
26 3 0.05
ACGTcount: A:0.20, C:0.25, G:0.19, T:0.35
Consensus pattern (24 bp):
GTGCTCTCTGATATTAGCACATCA
Found at i:6828353 original size:19 final size:19
Alignment explanation
Indices: 6828318--6828356 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
6828308 GCACGTCAGT
*
6828318 GCTCTCTGAATATTAGCAC
1 GCTCTCTGAATACTAGCAC
6828337 GCTCTCTG-ATCACTAGCAC
1 GCTCTCTGAAT-ACTAGCAC
6828356 G
1 G
6828357 TTAGTGCTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 2 0.11
19 16 0.89
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.28
Consensus pattern (19 bp):
GCTCTCTGAATACTAGCAC
Found at i:6829642 original size:24 final size:24
Alignment explanation
Indices: 6829610--6829658 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
6829600 AGTGATATTC
6829610 TTCTTTTGGATTTTCTCTAGGATA
1 TTCTTTTGGATTTTCTCTAGGATA
*
6829634 TTCTTTTGGATTTTCTCTGGGATA
1 TTCTTTTGGATTTTCTCTAGGATA
6829658 T
1 T
6829659 CATCGATCTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.14, C:0.12, G:0.18, T:0.55
Consensus pattern (24 bp):
TTCTTTTGGATTTTCTCTAGGATA
Found at i:6831311 original size:5 final size:5
Alignment explanation
Indices: 6831309--6831395 Score: 124
Period size: 5 Copynumber: 17.0 Consensus size: 5
6831299 TTTTATATTA
6831309 TATAT TATA- TATATT ATATAT TATAT TATAT TATAT TATAT TATATT
1 TATAT TATAT TATA-T -TATAT TATAT TATAT TATAT TATAT TATA-T
6831356 ATATAT TATAT TATAT TATAT TATAT TATAT TATA- TATAT
1 -TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
6831396 GACAAAGAAA
Statistics
Matches: 76, Mismatches: 0, Indels: 12
0.86 0.00 0.14
Matches are distributed among these distances:
4 8 0.11
5 57 0.75
6 3 0.04
7 8 0.11
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
TATAT
Found at i:6831312 original size:7 final size:7
Alignment explanation
Indices: 6831302--6831381 Score: 65
Period size: 7 Copynumber: 10.4 Consensus size: 7
6831292 AATTATGTTT
6831302 TATATTA
1 TATATTA
6831309 TATATTATA
1 TATA-T-TA
6831318 TATATTA
1 TATATTA
6831325 TATATTA
1 TATATTA
6831332 TAT-TATA
1 TATAT-TA
6831339 TTATATTATA
1 -TATA-T-TA
6831349 TTATATTA
1 -TATATTA
6831357 TATATTA
1 TATATTA
6831364 TAT-TATA
1 TATAT-TA
6831371 TTATATTA
1 -TATATTA
6831379 TAT
1 TAT
6831382 TATATTATAT
Statistics
Matches: 64, Mismatches: 0, Indels: 18
0.78 0.00 0.22
Matches are distributed among these distances:
6 2 0.03
7 33 0.52
8 12 0.19
9 8 0.12
10 9 0.14
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (7 bp):
TATATTA
Found at i:6831359 original size:32 final size:32
Alignment explanation
Indices: 6831309--6831393 Score: 163
Period size: 32 Copynumber: 2.7 Consensus size: 32
6831299 TTTTATATTA
6831309 TATATTATA-TATATTATATATTATATTATAT
1 TATATTATATTATATTATATATTATATTATAT
6831340 TATATTATATTATATTATATATTATATTATAT
1 TATATTATATTATATTATATATTATATTATAT
6831372 TATATTATATTATATTATATAT
1 TATATTATATTATATTATATAT
6831394 ATGACAAAGA
Statistics
Matches: 53, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
31 9 0.17
32 44 0.83
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (32 bp):
TATATTATATTATATTATATATTATATTATAT
Found at i:6831461 original size:40 final size:40
Alignment explanation
Indices: 6831404--6831499 Score: 147
Period size: 40 Copynumber: 2.4 Consensus size: 40
6831394 ATGACAAAGA
6831404 AAGAAAGAAAAGAAACAGAGAGCAAAACAAAACAGAGAAGG
1 AAGAAAG-AAAGAAACAGAGAGCAAAACAAAACAGAGAAGG
* *
6831445 GAGAAAGAAAGAAACAGAGAGCAAAACGAAACAGAGAAGG
1 AAGAAAGAAAGAAACAGAGAGCAAAACAAAACAGAGAAGG
*
6831485 AAGGAAGGAAAGAAA
1 AA-GAAAGAAAGAAA
6831500 GAAAGAAAAG
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
40 33 0.66
41 17 0.34
ACGTcount: A:0.64, C:0.08, G:0.28, T:0.00
Consensus pattern (40 bp):
AAGAAAGAAAGAAACAGAGAGCAAAACAAAACAGAGAAGG
Found at i:6832398 original size:41 final size:39
Alignment explanation
Indices: 6832350--6832461 Score: 111
Period size: 37 Copynumber: 2.9 Consensus size: 39
6832340 TCGACCTTGA
6832350 GTCGATGAGACACTGGGTGTCATACTATTACTTCGGATAG
1 GTCGATGAGACACTGGGTGTCA-ACTATTACTTCGGATAG
* ** ** * *
6832390 ATTCGATGAGGTACTGGGTACCAAC--TTACTTCGGCTTG
1 -GTCGATGAGACACTGGGTGTCAACTATTACTTCGGATAG
* *
6832428 GCCGATGAGACACTGGGTGTCAACTATTGCTTCG
1 GTCGATGAGACACTGGGTGTCAACTATTACTTCG
6832462 AACTATCCGA
Statistics
Matches: 55, Mismatches: 14, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
37 18 0.33
38 11 0.20
39 7 0.13
40 2 0.04
41 17 0.31
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (39 bp):
GTCGATGAGACACTGGGTGTCAACTATTACTTCGGATAG
Found at i:6837460 original size:25 final size:25
Alignment explanation
Indices: 6837426--6837486 Score: 79
Period size: 25 Copynumber: 2.4 Consensus size: 25
6837416 CGTGTATAAG
* *
6837426 TTATTTAAGTTTTGTATTAAGTAAAC
1 TTATGTAAGTTGTGTATTAAGT-AAC
*
6837452 -TATGTAAGTTGTGTATTATGTAAC
1 TTATGTAAGTTGTGTATTAAGTAAC
6837476 TTATGTAAGTT
1 TTATGTAAGTT
6837487 ATCAAAGCAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 3 0.10
25 28 0.90
ACGTcount: A:0.31, C:0.03, G:0.16, T:0.49
Consensus pattern (25 bp):
TTATGTAAGTTGTGTATTAAGTAAC
Found at i:6837555 original size:9 final size:9
Alignment explanation
Indices: 6837422--6837645 Score: 144
Period size: 9 Copynumber: 25.7 Consensus size: 9
6837412 TGTACGTGTA
*
6837422 TAAGTTATT
1 TAAGTTATG
*
6837431 TAAGTTTTG
1 TAAGTTATG
*
6837440 T-A-TTAAG
1 TAAGTTATG
**
6837447 TAAACTATG
1 TAAGTTATG
*
6837456 TAAGTTGTG
1 TAAGTTATG
6837465 T-A-TTATG
1 TAAGTTATG
*
6837472 TAACTTATG
1 TAAGTTATG
*
6837481 TAAGTTATC
1 TAAGTTATG
* **
6837490 AAAGCAATG
1 TAAGTTATG
*
6837499 TATGTTATG
1 TAAGTTATG
6837508 TAAG-T-TG
1 TAAGTTATG
6837515 TAAGTTAT-
1 TAAGTTATG
* *
6837523 TATGTATTATA
1 TAAG--TTATG
* *
6837534 TAACTTCTG
1 TAAGTTATG
6837543 TAAGTTATG
1 TAAGTTATG
6837552 TAAGTTATG
1 TAAGTTATG
*
6837561 TAAGTTGTG
1 TAAGTTATG
* *
6837570 TAAGCTATT
1 TAAGTTATG
*
6837579 TCAGTTATG
1 TAAGTTATG
6837588 TAAGCTT-TG
1 TAAG-TTATG
6837597 T-A-TTATG
1 TAAGTTATG
6837604 TAAGTTATG
1 TAAGTTATG
*
6837613 TAGGTTATG
1 TAAGTTATG
*
6837622 TAAGTTGTG
1 TAAGTTATG
*
6837631 TAAATTATG
1 TAAGTTATG
6837640 TAAGTT
1 TAAGTT
6837646 CTTGTACATA
Statistics
Matches: 160, Mismatches: 42, Indels: 26
0.70 0.18 0.11
Matches are distributed among these distances:
6 2 0.01
7 18 0.11
8 11 0.07
9 121 0.76
10 6 0.04
11 2 0.01
ACGTcount: A:0.31, C:0.04, G:0.19, T:0.46
Consensus pattern (9 bp):
TAAGTTATG
Found at i:6837900 original size:52 final size:52
Alignment explanation
Indices: 6837790--6838191 Score: 232
Period size: 53 Copynumber: 7.6 Consensus size: 52
6837780 TTTATAGCGG
*
6837790 GTAATGTATTTAAGTAACATACTTAAGTAAAAAATTTAACCAAATTTTAGTAA
1 GTAATGTATTTAAGTAACATATTTAAGT-AAAAATTTAACCAAATTTTAGTAA
* * * *
6837843 TTAATGTATCTGAGTAACATATTTAAGTAAAAATTTAACGAAATTTTAGTAA
1 GTAATGTATTTAAGTAACATATTTAAGTAAAAATTTAACCAAATTTTAGTAA
* * * ** *
6837895 GTAATGTATTTAAGTAACTTATTTAAGTAATATATTAAAGTAATATATTA--AGA
1 GTAATGTATTTAAGTAACATATTTAAGTAA-AAATTTAACCAA-ATTTTAGTA-A
* ** * *** ** *
6837948 GTAA--AATTT-AGTAA-A-AAATATGT-TTTATTT-ATTAATATTGTAAG-ACA
1 GTAATGTATTTAAGTAACATATTTAAGTAAAAATTTAACCAA-ATT-TTAGTA-A
* * * * * * * * * *
6837995 TCTAAAATATACTTAA-AAATATTTATTTAAGTAATGTAATATATACTTAAATTTATAGCAG
1 -GT--AATGTATTTAAGTAACA--TATTTAAGTAA--AAATTTA-AC-CAAATTT-TAGTAA
6838056 GTAATGTATTTAAGTAACATATTTAAGTAAAAAATTTAACCAAATTTTAGTAA
1 GTAATGTATTTAAGTAACATATTTAAGT-AAAAATTTAACCAAATTTTAGTAA
* * * *
6838109 TTAATGTATCTGAGTAACATATTTAAGTAAAAAATTTAACGAAATTTTAGTAA
1 GTAATGTATTTAAGTAACATATTTAAGT-AAAAATTTAACCAAATTTTAGTAA
*
6838162 GTAATGTATTTAAGTAACTTATTTAAGTAA
1 GTAATGTATTTAAGTAACATATTTAAGTAA
6838192 TATATTCAAG
Statistics
Matches: 267, Mismatches: 57, Indels: 51
0.71 0.15 0.14
Matches are distributed among these distances:
45 7 0.03
46 6 0.02
47 2 0.01
48 6 0.02
50 7 0.03
51 4 0.01
52 57 0.21
53 116 0.43
54 11 0.04
55 2 0.01
56 10 0.04
57 9 0.03
58 11 0.04
59 7 0.03
60 2 0.01
61 6 0.02
62 4 0.01
ACGTcount: A:0.45, C:0.05, G:0.10, T:0.40
Consensus pattern (52 bp):
GTAATGTATTTAAGTAACATATTTAAGTAAAAATTTAACCAAATTTTAGTAA
Found at i:6837910 original size:13 final size:13
Alignment explanation
Indices: 6837892--6837943 Score: 70
Period size: 13 Copynumber: 4.0 Consensus size: 13
6837882 GAAATTTTAG
*
6837892 TAAGTAATGTATT
1 TAAGTAATATATT
6837905 TAAGTAACT-TATT
1 TAAGTAA-TATATT
6837918 TAAGTAATATATT
1 TAAGTAATATATT
*
6837931 AAAGTAATATATT
1 TAAGTAATATATT
6837944 AAGAGTAAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
12 1 0.03
13 34 0.94
14 1 0.03
ACGTcount: A:0.44, C:0.02, G:0.10, T:0.44
Consensus pattern (13 bp):
TAAGTAATATATT
Found at i:6837944 original size:13 final size:13
Alignment explanation
Indices: 6837893--6837951 Score: 66
Period size: 13 Copynumber: 4.5 Consensus size: 13
6837883 AAATTTTAGT
* *
6837893 AAGTAATGTATTT
1 AAGTAATATATTA
*
6837906 AAGTAACT-TATTT
1 AAGTAA-TATATTA
6837919 AAGTAATATATTA
1 AAGTAATATATTA
6837932 AAGTAATATATTA
1 AAGTAATATATTA
6837945 AGAGTAA
1 A-AGTAA
6837952 AATTTAGTAA
Statistics
Matches: 42, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
12 1 0.02
13 35 0.83
14 6 0.14
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (13 bp):
AAGTAATATATTA
Found at i:6838078 original size:13 final size:13
Alignment explanation
Indices: 6838056--6838210 Score: 75
Period size: 13 Copynumber: 11.8 Consensus size: 13
6838046 TTTATAGCAG
*
6838056 GTAATGTATTTAA
1 GTAATATATTTAA
*
6838069 GTAACATATTTAA
1 GTAATATATTTAA
* *
6838082 GTAAAAAATTTAA
1 GTAATATATTTAA
** *
6838095 CCAA-ATTTTAGTAA
1 GTAATATATT--TAA
* * * *
6838109 TTAATGTATCTGA
1 GTAATATATTTAA
*
6838122 GTAACATATTTAA
1 GTAATATATTTAA
* *
6838135 GTAAAAAATTTAA
1 GTAATATATTTAA
*
6838148 CG-AA-ATTTTAGTAA
1 -GTAATATATT--TAA
*
6838162 GTAATGTATTTAA
1 GTAATATATTTAA
6838175 GTAACT-TATTTAA
1 GTAA-TATATTTAA
*
6838188 GTAATATATTCAA
1 GTAATATATTTAA
6838201 GTAATATATT
1 GTAATATATT
6838211 AAGAGTCAAA
Statistics
Matches: 106, Mismatches: 26, Indels: 20
0.70 0.17 0.13
Matches are distributed among these distances:
12 7 0.07
13 82 0.77
14 12 0.11
15 5 0.05
ACGTcount: A:0.45, C:0.05, G:0.10, T:0.40
Consensus pattern (13 bp):
GTAATATATTTAA
Found at i:6838257 original size:267 final size:266
Alignment explanation
Indices: 6837756--6838306 Score: 1057
Period size: 267 Copynumber: 2.1 Consensus size: 266
6837746 ACAAGTTCTG
*
6837756 TAAGTAATGTAATATATACTTAAATTTATAGCGGGTAATGTATTTAAGTAACATACTTAAGTAAA
1 TAAGTAATGTAATATATACTTAAATTTATAGCAGGTAATGTATTTAAGTAACATACTTAAGTAAA
6837821 AAATTTAACCAAATTTTAGTAATTAATGTATCTGAGTAACATATTTAAGTAAAAATTTAACGAAA
66 AAATTTAACCAAATTTTAGTAATTAATGTATCTGAGTAACATATTTAAGTAAAAATTTAACGAAA
6837886 TTTTAGTAAGTAATGTATTTAAGTAACTTATTTAAGTAATATATTAAAGTAATATATTAAGAGTA
131 TTTTAGTAAGTAATGTATTTAAGTAACTTATTTAAGTAATATATTAAAGTAATATATTAAGAGTA
6837951 AAATTTAGTAAAAAATATGTTTTATTTATTAATATTGTAAGACATCTAAAATATACTTAAAAATA
196 AAATTTAGTAAAAAATATGTTTTATTTATTAATATTGTAAGACATCTAAAATATACTTAAAAATA
6838016 TTTATT
261 TTTATT
*
6838022 TAAGTAATGTAATATATACTTAAATTTATAGCAGGTAATGTATTTAAGTAACATATTTAAGTAAA
1 TAAGTAATGTAATATATACTTAAATTTATAGCAGGTAATGTATTTAAGTAACATACTTAAGTAAA
6838087 AAATTTAACCAAATTTTAGTAATTAATGTATCTGAGTAACATATTTAAGTAAAAAATTTAACGAA
66 AAATTTAACCAAATTTTAGTAATTAATGTATCTGAGTAACATATTTAAGT-AAAAATTTAACGAA
*
6838152 ATTTTAGTAAGTAATGTATTTAAGTAACTTATTTAAGTAATATATTCAAGTAATATATTAAGAGT
130 ATTTTAGTAAGTAATGTATTTAAGTAACTTATTTAAGTAATATATTAAAGTAATATATTAAGAGT
*
6838217 CAAATTTAGTAAAAAATATGTTTTATTTATTAATATTGTAAGACATCTAAAATATACTTAAAAAT
195 AAAATTTAGTAAAAAATATGTTTTATTTATTAATATTGTAAGACATCTAAAATATACTTAAAAAT
6838282 ATTTATT
260 ATTTATT
6838289 TAAGTAATGTAATATATA
1 TAAGTAATGTAATATATA
6838307 AATTTTAAAA
Statistics
Matches: 280, Mismatches: 4, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
266 113 0.40
267 167 0.60
ACGTcount: A:0.45, C:0.05, G:0.10, T:0.40
Consensus pattern (266 bp):
TAAGTAATGTAATATATACTTAAATTTATAGCAGGTAATGTATTTAAGTAACATACTTAAGTAAA
AAATTTAACCAAATTTTAGTAATTAATGTATCTGAGTAACATATTTAAGTAAAAATTTAACGAAA
TTTTAGTAAGTAATGTATTTAAGTAACTTATTTAAGTAATATATTAAAGTAATATATTAAGAGTA
AAATTTAGTAAAAAATATGTTTTATTTATTAATATTGTAAGACATCTAAAATATACTTAAAAATA
TTTATT
Found at i:6838772 original size:19 final size:19
Alignment explanation
Indices: 6838748--6838789 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
6838738 CAGTCAACAG
6838748 AAAATAGCAAAACAGAAAA-
1 AAAATAG-AAAACAGAAAAC
*
6838767 AAAATAGAAAATAGAAAAC
1 AAAATAGAAAACAGAAAAC
6838786 AAAA
1 AAAA
6838790 AACAAAAAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 10 0.48
19 11 0.52
ACGTcount: A:0.76, C:0.07, G:0.10, T:0.07
Consensus pattern (19 bp):
AAAATAGAAAACAGAAAAC
Found at i:6838777 original size:7 final size:7
Alignment explanation
Indices: 6838743--6838827 Score: 68
Period size: 7 Copynumber: 12.3 Consensus size: 7
6838733 CACTTCAGTC
6838743 AACAGAA
1 AACAGAA
*
6838750 AATAGCAA
1 AACAG-AA
6838758 AACAG-A
1 AACAGAA
6838764 AA-A-AA
1 AACAGAA
*
6838769 AATAGAA
1 AACAGAA
*
6838776 AATAGAA
1 AACAGAA
*
6838783 AACAAAA
1 AACAGAA
*
6838790 AACAAAA
1 AACAGAA
6838797 AACAGAAA
1 AACAG-AA
* *
6838805 AATATAA
1 AACAGAA
6838812 AACAGAA
1 AACAGAA
6838819 AACAGAA
1 AACAGAA
6838826 AA
1 AA
6838828 TAAAGAAACA
Statistics
Matches: 64, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
5 4 0.06
6 4 0.06
7 45 0.70
8 11 0.17
ACGTcount: A:0.75, C:0.09, G:0.09, T:0.06
Consensus pattern (7 bp):
AACAGAA
Found at i:6838796 original size:6 final size:7
Alignment explanation
Indices: 6838781--6838843 Score: 54
Period size: 7 Copynumber: 8.6 Consensus size: 7
6838771 TAGAAAATAG
6838781 AAAACAA
1 AAAACAA
6838788 AAAACAA
1 AAAACAA
6838795 AAAACAGA
1 AAAACA-A
* *
6838803 AAAATAT
1 AAAACAA
*
6838810 AAAACAG
1 AAAACAA
*
6838817 AAAACAG
1 AAAACAA
*
6838824 AAAATAA
1 AAAACAA
6838831 AGAAACATA
1 A-AAACA-A
6838840 AAAA
1 AAAA
6838844 TGGTACAGAA
Statistics
Matches: 46, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
7 31 0.67
8 13 0.28
9 2 0.04
ACGTcount: A:0.78, C:0.10, G:0.06, T:0.06
Consensus pattern (7 bp):
AAAACAA
Found at i:6838796 original size:26 final size:26
Alignment explanation
Indices: 6838746--6838796 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
6838736 TTCAGTCAAC
*
6838746 AGAAAATAGCAAAACAGAAAAAAAAT
1 AGAAAATAGCAAAACAAAAAAAAAAT
6838772 AGAAAATAG-AAAACAAAAAACAAAA
1 AGAAAATAGCAAAACAAAAAA-AAAA
6838797 AACAGAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.76, C:0.08, G:0.10, T:0.06
Consensus pattern (26 bp):
AGAAAATAGCAAAACAAAAAAAAAAT
Found at i:6838806 original size:29 final size:28
Alignment explanation
Indices: 6838743--6838827 Score: 86
Period size: 29 Copynumber: 3.1 Consensus size: 28
6838733 CACTTCAGTC
*
6838743 AACAGAAAATAGCAAAAC--AGAA-AAAA
1 AACAGAAAATAG-AAAACAAAAAACAAAA
*
6838769 AATAGAAAATAGAAAACAAAAAACAAAA
1 AACAGAAAATAGAAAACAAAAAACAAAA
* * *
6838797 AACAGAAAAATATAAAACAGAAAACAGAA
1 AACAG-AAAATAGAAAACAAAAAACAAAA
6838826 AA
1 AA
6838828 TAAAGAAACA
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
25 5 0.10
26 11 0.22
27 3 0.06
28 8 0.16
29 22 0.45
ACGTcount: A:0.75, C:0.09, G:0.09, T:0.06
Consensus pattern (28 bp):
AACAGAAAATAGAAAACAAAAAACAAAA
Found at i:6838836 original size:22 final size:21
Alignment explanation
Indices: 6838765--6838842 Score: 84
Period size: 22 Copynumber: 3.6 Consensus size: 21
6838755 CAAAACAGAA
* * *
6838765 AAAAAATAGAAAATAGAAAAC
1 AAAAAACAGAAAACAGAAAAT
*
6838786 AAAAAACAAAAAACAGAAAAAT
1 AAAAAACAGAAAACAG-AAAAT
*
6838808 ATAAAACAGAAAACAGAAAAT
1 AAAAAACAGAAAACAGAAAAT
*
6838829 AAAGAAACATAAAA
1 AAA-AAACAGAAAA
6838843 ATGGTACAGA
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
21 20 0.43
22 27 0.57
ACGTcount: A:0.77, C:0.08, G:0.08, T:0.08
Consensus pattern (21 bp):
AAAAAACAGAAAACAGAAAAT
Found at i:6838873 original size:18 final size:19
Alignment explanation
Indices: 6838831--6838874 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
6838821 CAGAAAATAA
*
6838831 AGAAACATAAAAATGGTAC
1 AGAAACATAAAAATGCTAC
* *
6838850 AGAAACAT-AACATGCTAG
1 AGAAACATAAAAATGCTAC
6838868 AGAAACA
1 AGAAACA
6838875 GAAATTTTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 14 0.64
19 8 0.36
ACGTcount: A:0.57, C:0.14, G:0.16, T:0.14
Consensus pattern (19 bp):
AGAAACATAAAAATGCTAC
Found at i:6839564 original size:27 final size:27
Alignment explanation
Indices: 6839534--6839589 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
6839524 CAATTTGAAC
6839534 TTACAAGTTTTGAACAGTGCTGTAGTG
1 TTACAAGTTTTGAACAGTGCTGTAGTG
6839561 TTACAAGTTTTGAACAGTGCTGTAGTG
1 TTACAAGTTTTGAACAGTGCTGTAGTG
6839588 TT
1 TT
6839590 CAGTTCCTTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.25, C:0.11, G:0.25, T:0.39
Consensus pattern (27 bp):
TTACAAGTTTTGAACAGTGCTGTAGTG
Found at i:6840485 original size:198 final size:198
Alignment explanation
Indices: 6840136--6840561 Score: 649
Period size: 198 Copynumber: 2.2 Consensus size: 198
6840126 TAATTAACCC
6840136 ATTTGCGGCGTTTATATACAAGCGCCACTAGTAATATGATCAAACGCTGTCGTTTCCCGATCAGT
1 ATTTGCGGCGTTTATATACAAGCGCCACTAGTAATATGATCAAACGCTGTCGTTTCCCGATCAGT
* * * * *
6840201 TAACTCAAAGTCATTGCGTTTTAGAGAAAACGGCATCGTCTCCAAAAAAATTTAAAAAAATTTGC
66 TAACTAAAACTCATGGCATTTTAGAGAAAACAGCATCGTCTCCAAAAAAATTTAAAAAAATTTGC
* *
6840266 GGCGTTTACTAAAAACGCCACTAAAAG-TAAATAAGAAAACGAAGCCGTTTTCCTAAACAATTTC
131 AGCGTTTACTAAAAACGCCACT-AAAGTTAAAAAAGAAAACGAAGCCGTTTTCCTAAACAATTTC
6840330 TGTA
195 TGTA
* * *
6840334 ATTTGTGGCGTTTATATACCAGCGCCACTAGTAATATGATCAAACGCTGTCGTTTCCCGATTAGT
1 ATTTGCGGCGTTTATATACAAGCGCCACTAGTAATATGATCAAACGCTGTCGTTTCCCGATCAGT
* * *
6840399 TAACTAAAACTCATGGCATTTTAGAGAAAACAGCATCGTCTCCATAAAAA-TTAAAACCATTTTG
66 TAACTAAAACTCATGGCATTTTAGAGAAAACAGCATCGTCTCCAAAAAAATTTAAAA-AAATTTG
* *
6840463 CAGCGTTTACTAAAAGCGCCACTAAAGTTAAAAAAGAAAACGGAGCCGTTTTCCTAAACAATTTC
130 CAGCGTTTACTAAAAACGCCACTAAAGTTAAAAAAGAAAACGAAGCCGTTTTCCTAAACAATTTC
6840528 TGTA
195 TGTA
* * * *
6840532 AATTGCGGCATTTATACATAAGCGCCACTA
1 ATTTGCGGCGTTTATATACAAGCGCCACTA
6840562 AATATTAGGC
Statistics
Matches: 205, Mismatches: 21, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
197 10 0.05
198 195 0.95
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.28
Consensus pattern (198 bp):
ATTTGCGGCGTTTATATACAAGCGCCACTAGTAATATGATCAAACGCTGTCGTTTCCCGATCAGT
TAACTAAAACTCATGGCATTTTAGAGAAAACAGCATCGTCTCCAAAAAAATTTAAAAAAATTTGC
AGCGTTTACTAAAAACGCCACTAAAGTTAAAAAAGAAAACGAAGCCGTTTTCCTAAACAATTTCT
GTA
Found at i:6841016 original size:47 final size:47
Alignment explanation
Indices: 6840928--6841019 Score: 121
Period size: 47 Copynumber: 2.0 Consensus size: 47
6840918 GTTAATTTCG
* **
6840928 GTAATATTTAAAAAAATTAGATAAAATTATCAATCTCAGTTTTTTAA
1 GTAATATTTAAAAAAATTAGATAAAAATAAAAATCTCAGTTTTTTAA
* * * *
6840975 GTAATATTTATAAAAATTAGGTAAAAATAAAAATTTTAGTTTTTT
1 GTAATATTTAAAAAAATTAGATAAAAATAAAAATCTCAGTTTTTT
6841020 TATTTCTTTT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
47 38 1.00
ACGTcount: A:0.47, C:0.03, G:0.08, T:0.42
Consensus pattern (47 bp):
GTAATATTTAAAAAAATTAGATAAAAATAAAAATCTCAGTTTTTTAA
Found at i:6841037 original size:20 final size:19
Alignment explanation
Indices: 6841008--6841059 Score: 52
Period size: 20 Copynumber: 2.6 Consensus size: 19
6840998 AAAATAAAAA
*
6841008 TTTTAGTTTTTTTATTTCT-T
1 TTTTA-TTTTTTT-TTTTTAT
6841028 TTTTATTTTTTATTTTTTAT
1 TTTTATTTTTT-TTTTTTAT
*
6841048 TTTCATTTTTTT
1 TTTTATTTTTTT
6841060 GTAATTTTGA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
19 11 0.39
20 17 0.61
ACGTcount: A:0.12, C:0.04, G:0.02, T:0.83
Consensus pattern (19 bp):
TTTTATTTTTTTTTTTTAT
Found at i:6841043 original size:13 final size:14
Alignment explanation
Indices: 6841022--6841058 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
6841012 AGTTTTTTTA
6841022 TTTC-TTTTTTATT
1 TTTCATTTTTTATT
*
6841035 TTTTATTTTTTA-T
1 TTTCATTTTTTATT
6841048 TTTCATTTTTT
1 TTTCATTTTTT
6841059 TGTAATTTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
13 14 0.67
14 7 0.33
ACGTcount: A:0.11, C:0.05, G:0.00, T:0.84
Consensus pattern (14 bp):
TTTCATTTTTTATT
Found at i:6841057 original size:7 final size:7
Alignment explanation
Indices: 6841008--6841050 Score: 52
Period size: 7 Copynumber: 6.3 Consensus size: 7
6840998 AAAATAAAAA
*
6841008 TTTTAGT
1 TTTTATT
6841015 TTTT-TT
1 TTTTATT
* *
6841021 ATTTCTT
1 TTTTATT
6841028 TTTTATT
1 TTTTATT
6841035 TTTTATT
1 TTTTATT
6841042 TTTTATT
1 TTTTATT
6841049 TT
1 TT
6841051 CATTTTTTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
6 4 0.13
7 27 0.87
ACGTcount: A:0.12, C:0.02, G:0.02, T:0.84
Consensus pattern (7 bp):
TTTTATT
Found at i:6841057 original size:14 final size:13
Alignment explanation
Indices: 6841014--6841059 Score: 51
Period size: 14 Copynumber: 3.5 Consensus size: 13
6841004 AAAATTTTAG
6841014 TTTTTTTA-TTTC
1 TTTTTTTATTTTC
*
6841026 -TTTTTTATTTTT
1 TTTTTTTATTTTC
6841038 TATTTTTTATTTTC
1 T-TTTTTTATTTTC
6841052 ATTTTTTT
1 -TTTTTTT
6841060 GTAATTTTGA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
11 7 0.25
12 3 0.11
14 17 0.61
15 1 0.04
ACGTcount: A:0.11, C:0.04, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTTTTTATTTTC
Found at i:6841077 original size:10 final size:9
Alignment explanation
Indices: 6841062--6841095 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
6841052 ATTTTTTTGT
*
6841062 AATTTTGAC
1 AATTTTTAC
6841071 AATTTTTTAC
1 AA-TTTTTAC
6841081 AATTTTTAC
1 AATTTTTAC
6841090 AATTTT
1 AATTTT
6841096 AAATTATTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 15 0.65
10 8 0.35
ACGTcount: A:0.32, C:0.09, G:0.03, T:0.56
Consensus pattern (9 bp):
AATTTTTAC
Found at i:6841359 original size:7 final size:7
Alignment explanation
Indices: 6841347--6841414 Score: 68
Period size: 7 Copynumber: 9.9 Consensus size: 7
6841337 ATAACCCAAT
6841347 CCCTAAC
1 CCCTAAC
6841354 CCCTAAC
1 CCCTAAC
*
6841361 CCTTAA-
1 CCCTAAC
6841367 CCCTAAAC
1 CCCT-AAC
*
6841375 CCTTAAC
1 CCCTAAC
*
6841382 CCATAAC
1 CCCTAAC
*
6841389 CTCT-AC
1 CCCTAAC
*
6841395 CTCTAAC
1 CCCTAAC
6841402 CCCTAAC
1 CCCTAAC
6841409 CCCTAA
1 CCCTAA
6841415 ACCTTATTTA
Statistics
Matches: 51, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
6 9 0.18
7 39 0.76
8 3 0.06
ACGTcount: A:0.31, C:0.49, G:0.00, T:0.21
Consensus pattern (7 bp):
CCCTAAC
Found at i:6841376 original size:96 final size:96
Alignment explanation
Indices: 6841192--6841369 Score: 223
Period size: 96 Copynumber: 1.9 Consensus size: 96
6841182 TATAAAGAAC
* * ** * * * *
6841192 TTATTTAATATGTTAATTAAAAAGTACTAATTAATCCAAATCTTAATCCCTAACCCGACTCCAAA
1 TTATTTAATATATAAATTAAAAAACACTAATTAATCCAAACCTTAAACCATAACCCAACTCCAAA
*
6841257 TCCATAACCCCTAACCCCTAACCCCAAAACT
66 CCCATAACCCCTAACCCCTAACCCCAAAACT
* *
6841288 TTATTTAATATATAAATTAAAAAACACTAATTAATCTAAACCTTAAACCATAACCCAA-TCCCTA
1 TTATTTAATATATAAATTAAAAAACACTAATTAATCCAAACCTTAAACCATAACCCAACT-CCAA
* *
6841352 ACCCCTAACCCTTAACCC
65 ACCCATAACCCCTAACCC
6841370 TAAACCCTTA
Statistics
Matches: 68, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
95 1 0.01
96 67 0.99
ACGTcount: A:0.42, C:0.29, G:0.02, T:0.28
Consensus pattern (96 bp):
TTATTTAATATATAAATTAAAAAACACTAATTAATCCAAACCTTAAACCATAACCCAACTCCAAA
CCCATAACCCCTAACCCCTAACCCCAAAACT
Found at i:6841381 original size:21 final size:20
Alignment explanation
Indices: 6841338--6841410 Score: 69
Period size: 20 Copynumber: 3.6 Consensus size: 20
6841328 CCTTAAACCA
*
6841338 TAACCCA-ATCCCTAACCCC
1 TAACCCATAACCCTAACCCC
* *
6841357 TAACCCTTAACCCTAAACCCT
1 TAACCCATAACCCT-AACCCC
*
6841378 TAACCCATAACCTCT-ACCTC
1 TAACCCATAACC-CTAACCCC
*
6841398 TAACCCCTAACCC
1 TAACCCATAACCC
6841411 CTAAACCTTA
Statistics
Matches: 44, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
19 7 0.16
20 19 0.43
21 16 0.36
22 2 0.05
ACGTcount: A:0.32, C:0.48, G:0.00, T:0.21
Consensus pattern (20 bp):
TAACCCATAACCCTAACCCC
Found at i:6841531 original size:14 final size:14
Alignment explanation
Indices: 6841488--6841553 Score: 51
Period size: 14 Copynumber: 4.6 Consensus size: 14
6841478 TGATTTTATA
*
6841488 AACCCTAAATCCCT
1 AACCCTAAACCCCT
* * **
6841502 AACTCTTAACATCT
1 AACCCTAAACCCCT
*
6841516 AACCCTTAACCCCT
1 AACCCTAAACCCCT
*
6841530 AACCCATAAACCCAT
1 AACCC-TAAACCCCT
6841545 AACCACTAA
1 AACC-CTAA
6841554 TCTATAAACC
Statistics
Matches: 40, Mismatches: 10, Indels: 3
0.75 0.19 0.06
Matches are distributed among these distances:
14 25 0.62
15 14 0.35
16 1 0.03
ACGTcount: A:0.39, C:0.39, G:0.00, T:0.21
Consensus pattern (14 bp):
AACCCTAAACCCCT
Found at i:6841547 original size:22 final size:22
Alignment explanation
Indices: 6841516--6841563 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
6841506 CTTAACATCT
* *
6841516 AACCCTTAACCCCTAACCCATA
1 AACCCATAACCACTAACCCATA
* *
6841538 AACCCATAACCACTAATCTATA
1 AACCCATAACCACTAACCCATA
6841560 AACC
1 AACC
6841564 TTAAATCATA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.42, C:0.40, G:0.00, T:0.19
Consensus pattern (22 bp):
AACCCATAACCACTAACCCATA
Found at i:6842070 original size:114 final size:113
Alignment explanation
Indices: 6841933--6842191 Score: 262
Period size: 114 Copynumber: 2.3 Consensus size: 113
6841923 GCTGAAGTAG
* * *
6841933 TTTTGCGGCGCTTTCCCAAAAACGCCGCTAA-TACTATTC-TTTAGCGGCGTTTCACC-ATAAAC
1 TTTTGCGGCGCTTTACAAAAAACGCCACTAATTA-TATTCTTTTA-CGGCGTTTCACCAAT-AAC
* * *
6841995 GCCAC-AAATTCTAATATACCTCAAAACCAAACGCTGCGTTTTGGTTAAGGTA
63 GCCACTAAA-ACTAATATACCTC-AAACCAAACGCTGCGTTTTCGTTAAGATA
* ****
6842047 TTTTGCGGCGC-TTACAAATAAACGCCACTAATTATGTTCTTTTACGGCGTTTTTTTAATAACGC
1 TTTTGCGGCGCTTTACAAA-AAACGCCACTAATTATATTCTTTTACGGCGTTTCACCAATAACGC
* *
6842111 CACTAAAACTAATCTACCTCAAACCAAACGGTGCGTTTTCGTTAAGATA
65 CACTAAAACTAATATACCTCAAACCAAACGCTGCGTTTTCGTTAAGATA
* **
6842160 -TTTGCGGCGTTTTATC-GTAAACGCCACTAATT
1 TTTTGCGGCGCTTTA-CAAAAAACGCCACTAATT
6842192 CTAATATACC
Statistics
Matches: 122, Mismatches: 16, Indels: 16
0.79 0.10 0.10
Matches are distributed among these distances:
112 23 0.19
113 34 0.28
114 54 0.44
115 11 0.09
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (113 bp):
TTTTGCGGCGCTTTACAAAAAACGCCACTAATTATATTCTTTTACGGCGTTTCACCAATAACGCC
ACTAAAACTAATATACCTCAAACCAAACGCTGCGTTTTCGTTAAGATA
Found at i:6842184 original size:73 final size:75
Alignment explanation
Indices: 6842106--6842243 Score: 208
Period size: 74 Copynumber: 1.9 Consensus size: 75
6842096 TTTTTTTAAT
* *
6842106 AACGCCACTAAAACTAATCTACCTC-AAACCAAACGGTGCGTTTTCGTTAAGATA-TTTGCGGCG
1 AACGCCACTAAAACTAATATACCTCAAAACCAAACGCTGCGTTTTCGTTAAGATATTTTGCGGCG
6842169 TTTTATCGTA
66 TTTTATCGTA
** * *
6842179 AACGCCACTAATTCTAATATACCTCAAAACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCGGCG
1 AACGCCACTAAAACTAATATACCTCAAAACCAAACGCTGCGTTTTCGTTAAGATATTTTGCGGCG
6842244 CTAACAAATA
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
73 22 0.39
74 26 0.46
75 9 0.16
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (75 bp):
AACGCCACTAAAACTAATATACCTCAAAACCAAACGCTGCGTTTTCGTTAAGATATTTTGCGGCG
TTTTATCGTA
Found at i:6842194 original size:187 final size:187
Alignment explanation
Indices: 6841976--6842317 Score: 594
Period size: 187 Copynumber: 1.8 Consensus size: 187
6841966 CTATTCTTTA
6841976 GCGGCGTTTCACCATAAACGCCACAAATTCTAATATACCTCAAAACCAAACGCTGCGTTTTGGTT
1 GCGGCGTTTCACCATAAACGCCACAAATTCTAATATACCTCAAAACCAAACGCTGCGTTTTGGTT
* * * *
6842041 AAGGTATTTTGCGGCGCTTACAAATAAACGCCACTAATTATGTTCTTTTACGGCGTTTTTTTAAT
66 AAGGTATTTTGCGGCGCTAACAAATAAACGCCACTAATGATGTTCTTTTACGGCGTTTGTTTAAA
6842106 AACGCCACTAAAACTAATCTACCTCAAACCAAACGGTGCGTTTTCGTTAAGATATTT
131 AACGCCACTAAAACTAATCTACCTCAAACCAAACGGTGCGTTTTCGTTAAGATATTT
* * * *
6842163 GCGGCGTTTTATCGTAAACGCCACTAATTCTAATATACCTCAAAACCAAACGCTGCGTTTTGGTT
1 GCGGCGTTTCACCATAAACGCCACAAATTCTAATATACCTCAAAACCAAACGCTGCGTTTTGGTT
6842228 AAGGTATTTTGCGGCGCTAACAAATAAACGCCACTAATGATGTTCTTTTACGGCGTTTGTTTAAA
66 AAGGTATTTTGCGGCGCTAACAAATAAACGCCACTAATGATGTTCTTTTACGGCGTTTGTTTAAA
* *
6842293 AACGCCACTAATATTAATCTACCTC
131 AACGCCACTAAAACTAATCTACCTC
6842318 TGGTTAAGAT
Statistics
Matches: 145, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
187 145 1.00
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (187 bp):
GCGGCGTTTCACCATAAACGCCACAAATTCTAATATACCTCAAAACCAAACGCTGCGTTTTGGTT
AAGGTATTTTGCGGCGCTAACAAATAAACGCCACTAATGATGTTCTTTTACGGCGTTTGTTTAAA
AACGCCACTAAAACTAATCTACCTCAAACCAAACGGTGCGTTTTCGTTAAGATATTT
Found at i:6842694 original size:396 final size:397
Alignment explanation
Indices: 6841954--6842924 Score: 1457
Period size: 396 Copynumber: 2.4 Consensus size: 397
6841944 TTTCCCAAAA
* * * * *
6841954 ACGCCGCTAATACTATTCTTTAGCGGCGTTTCACCA-TAAACGCCACAAATTCTAATATAC-CTC
1 ACGCCGCTAATACTATTCTTTAGCGGCGTTTTA-TAGAAAACGCCACTAATTCTAATATACAAT-
**
6842017 AAAACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCGGCGCTTACAAATAAACGCCACTAATTAT
64 TGAACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCGGCGCTTA-AAATAAACGCCACTAATTAT
*
6842082 GTTCTTTTACGGCGTTTTTTTAATAACGCCACTAAAACTAATCTACCTCAAACCAAACGGTGCGT
128 GTTCTTTTACGGCGTTTTTTTAAAAACGCCACTAAAACTAATCTACCTCAAACCAAACGGTGCGT
6842147 TTTCGTTAAGATATTTGCGGCGTTTTATCGTAAACGCCACTAATTCTAATATACCTCAAAACCAA
193 TTTCGTTAAGATATTTGCGGCGTTTTATCGTAAACGCCACTAATTCTAATATACCTCAAAACCAA
* *
6842212 ACGCTGCGTTTTGGTTAAGGTATTTTGCGGCGCTAACAAATAAACGCCACTAATGATGTTCTTTT
258 ACGCTACGTTTTGGTTAAGGTATTTTGCGACGCTAACAAATAAACGCCACTAATGATGTTCTTTT
*
6842277 ACGGCGTTTGTTTAAAAACGCCACTAATATTAATCTACCT-CT-G-GTTAAGATATTTGCGGCGC
323 ACGGCGTTTGTTTAAAAACGCCACTAATACTAATCTACCTACTCGTGTTAAGATATTTGCGGCGC
* *
6842339 TTCTTGTGAT
388 TTCTTGTAAG
*
6842349 ACGCCGCTAATACTATTCTTTAGCGGCGTTTTATAGAAAACGCCACTAATTCTGATATACAATTG
1 ACGCCGCTAATACTATTCTTTAGCGGCGTTTTATAGAAAACGCCACTAATTCTAATATACAATTG
* *
6842414 ATCCAAACGCTGCGTTTTGGTTAAGGTATTTTGCGGTGCTTAAAAGTAAACGCCACTAATTATGT
66 AACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCGGCGCTTAAAA-TAAACGCCACTAATTATGT
* * *
6842479 TCTTTTACGGCGTTTTTTTAAAAACGCCACTAACACTAATCTACCTTAAGACCAAACGGTGTGTT
130 TCTTTTACGGCGTTTTTTTAAAAACGCCACTAAAACTAATCTACCTCAA-ACCAAACGGTGCGTT
* * *
6842544 TTCGTTAAGATATTTGCGGCGTTTTATCGTAAATGCGACTAATTCTAATATACCTCAAAACCAAG
194 TTCGTTAAGATATTTGCGGCGTTTTATCGTAAACGCCACTAATTCTAATATACCTCAAAACCAAA
*
6842609 CGCTACGTTTTGGTTAAGGTATTTTGCGACGCTTACAAATAAACGCCACTAATGATGTTCTTTTA
259 CGCTACGTTTTGGTTAAGGTATTTTGCGACGCTAACAAATAAACGCCACTAATGATGTTCTTTTA
6842674 CGGCGTTTGTTTAAAAACGCCACTAATACTAATCTACCTCGAGACCAAACGCTGCGTTTTCGTTA
324 CGGCGTTTGTTTAAAAACGCCACTAATACTAATCTACCT---------A--CT-CG---T-GTTA
*
6842739 AGATATTTGCGGCGCTTTTTGTAAG
373 AGATATTTGCGGCGCTTCTTGTAAG
* *
6842764 ACGCCGCTAATACTATTCTTTAGTGGCGTTTTATCGAAAACGCCACTAATTCTAATATACAATTG
1 ACGCCGCTAATACTATTCTTTAGCGGCGTTTTATAGAAAACGCCACTAATTCTAATATACAATTG
*
6842829 AACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCGGCGTTTAAAATAAACGCCACTAATTATGTT
66 AACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCGGCGCTTAAAATAAACGCCACTAATTATGTT
* *
6842894 CTTTTACGGTGTTTTTTTAGAAACGCCACTA
131 CTTTTACGGCGTTTTTTTAAAAACGCCACTA
6842925 GTTGTTCAGG
Statistics
Matches: 521, Mismatches: 32, Indels: 27
0.90 0.06 0.05
Matches are distributed among these distances:
394 4 0.01
395 158 0.30
396 177 0.34
408 2 0.00
410 1 0.00
414 49 0.09
415 130 0.25
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.34
Consensus pattern (397 bp):
ACGCCGCTAATACTATTCTTTAGCGGCGTTTTATAGAAAACGCCACTAATTCTAATATACAATTG
AACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCGGCGCTTAAAATAAACGCCACTAATTATGTT
CTTTTACGGCGTTTTTTTAAAAACGCCACTAAAACTAATCTACCTCAAACCAAACGGTGCGTTTT
CGTTAAGATATTTGCGGCGTTTTATCGTAAACGCCACTAATTCTAATATACCTCAAAACCAAACG
CTACGTTTTGGTTAAGGTATTTTGCGACGCTAACAAATAAACGCCACTAATGATGTTCTTTTACG
GCGTTTGTTTAAAAACGCCACTAATACTAATCTACCTACTCGTGTTAAGATATTTGCGGCGCTTC
TTGTAAG
Found at i:6842707 original size:188 final size:189
Alignment explanation
Indices: 6842416--6842757 Score: 562
Period size: 188 Copynumber: 1.8 Consensus size: 189
6842406 TACAATTGAT
* ** *
6842416 CCAAACGCTGCGTTTTGGTTAAGGTATTTTGCGGTGCTTAAAAGTAAACGCCACTAATTATGTTC
1 CCAAACGCTACGTTTTGGTTAAGGTATTTTGCGACGCTTAAAAGTAAACGCCACTAATGATGTTC
* * * *
6842481 TTTTACGGCGTTTTTTTAAAAACGCCACTAACACTAATCTACCTTAAGACCAAACGGTGTGTTTT
66 TTTTACGGCGTTTGTTTAAAAACGCCACTAACACTAATCTACCTCAAGACCAAACGCTGCGTTTT
6842546 CGTTAAGATATTTGCGGCG-TTTTATCGTAAATGCGACTAATTCTAATATACCTCAAAA
131 CGTTAAGATATTTGCGGCGCTTTTATCGTAAATGCGACTAATTCTAATATACCTCAAAA
*
6842604 CCAAGCGCTACGTTTTGGTTAAGGTATTTTGCGACGCTTACAAA-TAAACGCCACTAATGATGTT
1 CCAAACGCTACGTTTTGGTTAAGGTATTTTGCGACGCTTA-AAAGTAAACGCCACTAATGATGTT
* *
6842668 CTTTTACGGCGTTTGTTTAAAAACGCCACTAATACTAATCTACCTCGAGACCAAACGCTGCGTTT
65 CTTTTACGGCGTTTGTTTAAAAACGCCACTAACACTAATCTACCTCAAGACCAAACGCTGCGTTT
6842733 TCGTTAAGATATTTGCGGCGCTTTT
130 TCGTTAAGATATTTGCGGCGCTTTT
6842758 TGTAAGACGC
Statistics
Matches: 141, Mismatches: 11, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
188 134 0.95
189 7 0.05
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (189 bp):
CCAAACGCTACGTTTTGGTTAAGGTATTTTGCGACGCTTAAAAGTAAACGCCACTAATGATGTTC
TTTTACGGCGTTTGTTTAAAAACGCCACTAACACTAATCTACCTCAAGACCAAACGCTGCGTTTT
CGTTAAGATATTTGCGGCGCTTTTATCGTAAATGCGACTAATTCTAATATACCTCAAAA
Found at i:6842881 original size:113 final size:112
Alignment explanation
Indices: 6842560--6842908 Score: 348
Period size: 113 Copynumber: 3.1 Consensus size: 112
6842550 AAGATATTTG
* * * * * *
6842560 CGGCGTTTTATCGTAAATGCGACTAATTCTAATATACCTCAAAACCAAGCGCTACGTTTTGGTTA
1 CGGCGTTTTATCGAAAACGCCACTAATTCTAATATACCT-AGAACCAAACGCTGCGTTTTGGTTA
* * *
6842625 AGGTATTTTGCGACGCTTACAAATAAACGCCACTAATGATGTTCTTTTA
65 AGGTATTTTGCGGCGTTTA-AAATAAACGCCACTAATGATATTCTTTTA
** * * * *
6842674 CGGCGTTTGT-TTAAAAACGCCACTAATACTAATCTACCTCGAGACCAAACGCTGCGTTTTCGTT
1 CGGCGTTT-TATCGAAAACGCCACTAATTCTAATATACCTAGA-ACCAAACGCTGCGTTTTGGTT
* *** *
6842738 AAGATA-TTTGCGGCGCTTT-TTGTAAGACGCCGCTAAT-ACTATTC-TTTA
64 AAGGTATTTTGCGGCG-TTTAAAATAA-ACGCCACTAATGA-TATTCTTTTA
* * *
6842786 GTGGCGTTTTATCGAAAACGCCACTAATTCTAATATACAATTGAACCAAACGCTGCGTTTTGGTT
1 -CGGCGTTTTATCGAAAACGCCACTAATTCTAATATAC-CTAGAACCAAACGCTGCGTTTTGGTT
* *
6842851 AAGGTATTTTGCGGCGTTTAAAATAAACGCCACTAATTATGTTCTTTTA
64 AAGGTATTTTGCGGCGTTTAAAATAAACGCCACTAATGATATTCTTTTA
*
6842900 CGGTGTTTT
1 CGGCGTTTT
6842909 TTTAGAAACG
Statistics
Matches: 187, Mismatches: 36, Indels: 25
0.75 0.15 0.10
Matches are distributed among these distances:
112 9 0.05
113 102 0.55
114 75 0.40
115 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (112 bp):
CGGCGTTTTATCGAAAACGCCACTAATTCTAATATACCTAGAACCAAACGCTGCGTTTTGGTTAA
GGTATTTTGCGGCGTTTAAAATAAACGCCACTAATGATATTCTTTTA
Found at i:6846039 original size:6 final size:6
Alignment explanation
Indices: 6846030--6846091 Score: 51
Period size: 6 Copynumber: 10.7 Consensus size: 6
6846020 AAGAAAAAGA
* * *
6846030 AAAATC AAAATC AAAGTC AAAATG AAAAT- GAAA-- AAAATC AAAAATC
1 AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC -AAAATC
6846076 AAAAATC AAAAT- AAAA
1 -AAAATC AAAATC AAAA
6846092 AAACAAAAAC
Statistics
Matches: 48, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
4 3 0.06
5 7 0.15
6 25 0.52
7 13 0.27
ACGTcount: A:0.71, C:0.10, G:0.05, T:0.15
Consensus pattern (6 bp):
AAAATC
Found at i:6846079 original size:14 final size:14
Alignment explanation
Indices: 6846061--6846100 Score: 55
Period size: 13 Copynumber: 2.9 Consensus size: 14
6846051 ATGAAAATGA
6846061 AAAAAATCAAAAAT
1 AAAAAATCAAAAAT
*
6846075 CAAAAATC-AAAAT
1 AAAAAATCAAAAAT
*
6846088 AAAAAAACAAAAA
1 AAAAAATCAAAAA
6846101 CAAGAAAGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
13 11 0.50
14 11 0.50
ACGTcount: A:0.80, C:0.10, G:0.00, T:0.10
Consensus pattern (14 bp):
AAAAAATCAAAAAT
Found at i:6846091 original size:27 final size:27
Alignment explanation
Indices: 6846036--6846100 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 27
6846026 AAGAAAAATC
* *
6846036 AAAATC-AAAGTCAAAATGAAAATGAAA
1 AAAATCAAAAATCAAAATCAAAAT-AAA
6846063 AAAATCAAAAATCAAAAATCAAAATAAA
1 AAAATCAAAAATC-AAAATCAAAATAAA
6846091 AAAA-CAAAAA
1 AAAATCAAAAA
6846101 CAAGAAAGAA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
27 12 0.35
28 12 0.35
29 10 0.29
ACGTcount: A:0.74, C:0.09, G:0.05, T:0.12
Consensus pattern (27 bp):
AAAATCAAAAATCAAAATCAAAATAAA
Found at i:6846092 original size:20 final size:20
Alignment explanation
Indices: 6846063--6846100 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
6846053 GAAAATGAAA
* *
6846063 AAAATCAAAAATCAAAAATC
1 AAAATAAAAAAACAAAAATC
6846083 AAAATAAAAAAACAAAAA
1 AAAATAAAAAAACAAAAA
6846101 CAAGAAAGAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.79, C:0.11, G:0.00, T:0.11
Consensus pattern (20 bp):
AAAATAAAAAAACAAAAATC
Found at i:6846103 original size:6 final size:7
Alignment explanation
Indices: 6846062--6846100 Score: 53
Period size: 7 Copynumber: 5.7 Consensus size: 7
6846052 TGAAAATGAA
6846062 AAAAATC
1 AAAAATC
6846069 AAAAATC
1 AAAAATC
6846076 AAAAATC
1 AAAAATC
*
6846083 -AAAATA
1 AAAAATC
*
6846089 AAAAAAC
1 AAAAATC
6846096 AAAAA
1 AAAAA
6846101 CAAGAAAGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
6 5 0.18
7 23 0.82
ACGTcount: A:0.79, C:0.10, G:0.00, T:0.10
Consensus pattern (7 bp):
AAAAATC
Found at i:6846156 original size:19 final size:18
Alignment explanation
Indices: 6846134--6846171 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
6846124 TCAAGATTAA
6846134 AATGAAAAATGAGAAAAAG
1 AATGAAAAATGA-AAAAAG
*
6846153 AATGAAGAATGAAAAAAG
1 AATGAAAAATGAAAAAAG
6846171 A
1 A
6846172 GAAATCTAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.68, C:0.00, G:0.21, T:0.11
Consensus pattern (18 bp):
AATGAAAAATGAAAAAAG
Found at i:6847087 original size:7 final size:7
Alignment explanation
Indices: 6847075--6847116 Score: 61
Period size: 7 Copynumber: 6.3 Consensus size: 7
6847065 TCTGAGTCAA
6847075 AAAAATG
1 AAAAATG
6847082 AAAAATG
1 AAAAATG
*
6847089 -AGAATG
1 AAAAATG
6847095 AAAAATG
1 AAAAATG
6847102 AAAAA-G
1 AAAAATG
6847108 AAAAATG
1 AAAAATG
6847115 AA
1 AA
6847117 GAGGCTAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 11 0.35
7 20 0.65
ACGTcount: A:0.71, C:0.00, G:0.17, T:0.12
Consensus pattern (7 bp):
AAAAATG
Found at i:6847096 original size:13 final size:13
Alignment explanation
Indices: 6847076--6847116 Score: 64
Period size: 13 Copynumber: 3.2 Consensus size: 13
6847066 CTGAGTCAAA
6847076 AAAATGAAAAATG
1 AAAATGAAAAATG
*
6847089 AGAATGAAAAATG
1 AAAATGAAAAATG
*
6847102 AAAAAGAAAAATG
1 AAAATGAAAAATG
6847115 AA
1 AA
6847117 GAGGCTAAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.71, C:0.00, G:0.17, T:0.12
Consensus pattern (13 bp):
AAAATGAAAAATG
Found at i:6847114 original size:20 final size:20
Alignment explanation
Indices: 6847075--6847116 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
6847065 TCTGAGTCAA
*
6847075 AAAAATGAAAAATGAGAATG
1 AAAAATGAAAAATGAAAATG
6847095 AAAAATGAAAAA-GAAAAATG
1 AAAAATGAAAAATG-AAAATG
6847115 AA
1 AA
6847117 GAGGCTAAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 1 0.05
20 19 0.95
ACGTcount: A:0.71, C:0.00, G:0.17, T:0.12
Consensus pattern (20 bp):
AAAAATGAAAAATGAAAATG
Found at i:6848494 original size:85 final size:85
Alignment explanation
Indices: 6848393--6848674 Score: 320
Period size: 87 Copynumber: 3.3 Consensus size: 85
6848383 CTAGTAATCC
* *
6848393 ATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTATCTGAAGTTACAACAG
1 ATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAG
*
6848458 AGTTGATCGCATCAGGTATT
66 AGTAGATCGCATCAGGTATT
* ** ** ** *
6848478 ATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCA-GATCTTATCTCCCTGATA-TTACA
1 ATCTCCCTGAGATTACAGTGGAGCGGA-TTAA-AA-TAAAGGATCTTATCTCTCTGA-AGTTACA
* * *
6848541 GCAGAGCAGAT-GAAGCTA-GTAATCCT
62 GCAGAGTAGATCGCATC-AGGT-AT--T
6848567 ATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAG
1 ATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAG
*
6848632 AGTAGATCGCATCAGGTCTT
66 AGTAGATCGCATCAGGTATT
*
6848652 ATCTCCCTGAGGTTACAGTGGAG
1 ATCTCCCTGAGATTACAGTGGAG
6848675 TAGATCGAAG
Statistics
Matches: 158, Mismatches: 27, Indels: 24
0.76 0.13 0.11
Matches are distributed among these distances:
85 47 0.30
86 10 0.06
87 66 0.42
88 10 0.06
89 25 0.16
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.28
Consensus pattern (85 bp):
ATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAG
AGTAGATCGCATCAGGTATT
Found at i:6848524 original size:87 final size:86
Alignment explanation
Indices: 6848431--6848725 Score: 312
Period size: 87 Copynumber: 3.4 Consensus size: 86
6848421 TAAAATAAAG
* * *
6848431 GATCTTATCTATCTGAAGTTACAACAGAGTTGATCGCATCAGGTATTATCTCCCTGAGGTTACAG
1 GATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTATTATCTCCCTGAGGTTACAG
*
6848496 TGGAGTAGACCGAAGAATTTCA
66 TGGAGTAGA-CGAAGAATTACA
* * * * *
6848518 GATCTTATCTCCCTGATA-TTACAGCAGAGCAGAT-GAAGCTA-GTAATCCTATCTCCCTGAGAT
1 GATCTTATCTCTCTGA-AGTTACAGCAGAGTAGATCGCATC-AGGT-AT--TATCTCCCTGAGGT
** ** *
6848580 TACAGTGGAGCGGATTAA-AA-TAAA
61 TACAGTGGAGTAGACGAAGAATTACA
*
6848604 GGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTACA
1 -GATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTATTATCTCCCTGAGGTTACA
6848669 GTGGAGTAGATCGAAGAATTACA
65 GTGGAGTAGA-CGAAGAATTACA
* * **
6848692 GATCTTATCTCCCTGAGGTTACAGTGGAGTAGAT
1 GATCTTATCTCTCTGAAGTTACAGCAGAGTAGAT
6848726 TGAAGCCAGA
Statistics
Matches: 167, Mismatches: 29, Indels: 24
0.76 0.13 0.11
Matches are distributed among these distances:
85 25 0.15
86 10 0.06
87 96 0.57
88 11 0.07
89 25 0.15
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (86 bp):
GATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTATTATCTCCCTGAGGTTACAG
TGGAGTAGACGAAGAATTACA
Found at i:6848622 original size:174 final size:175
Alignment explanation
Indices: 6848327--6849332 Score: 720
Period size: 174 Copynumber: 5.8 Consensus size: 175
6848317 CCCCAGGAAA
*
6848327 TAGACCGAAGAATTTTAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATC
1 TAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATC
6848392 C-ATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTATCTGAAGTTACAAC
66 CTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTATCTGAAGTTACAAC
*
6848456 AGAGTTGATCGCATCAGGTATTATCTCCCTGAGGTTACAGTGGAG
131 AGAGTAGATCGCATCAGGTATTATCTCCCTGAGGTTACAGTGGAG
* *
6848501 TAGACCGAAGAATTTCAGATCTTATCTCCCTGATATTACAGCAGAGCAGA-TGAAGCTAGTAATC
1 TAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATC
* *
6848565 CTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGC
66 CTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTATCTGAAGTTACAAC
*
6848630 AGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTACAGTGGAG
131 AGAGTAGATCGCATCAGGTATTATCTCCCTGAGGTTACAGTGGAG
* * * * * *
6848675 TAGATCGAAGAATTACAGATCTTATCTCCCTGAGGTTACAGTGGAGTAGATTGAAGCCAG-AGAT
1 TAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTA-AT
* * * * * * ** * ** *
6848739 CTTATCTCCTTGAGATTACAGCGGAGCAGATCT--AAGACACTATCCTATCTCCCT-TAGATTAC
65 CCTATCTCCCTGAGATTACAGTGGAGCGGAT-TAAAATAAAGGATCTTATCTATCTGAAG-TTAC
* * * * * * * * * * *
6848801 AGTGAAGCGGATTA-A-AGTAACAGATCTTATATCTCTGAAGTTACAGTAGAG
128 ----AA-CAGAGTAGATCGCATCAGGTATTATCTCCCTGAGGTTACAGTGGAG
* * * *
6848852 TAGATC---G--TATCCGGTCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGC-AGATAAT
1 TAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAG-TAAT
* * * * * * *
6848911 CCTATCTCCTTGAGATTATAGTGGAGTGGGTTAAAGTAACA-GATCTTATCTCTCTGAAGTTATA
65 CCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAA-AGGATCTTATCTATCTGAAGTTACA
** * * * * ** *
6848975 GTAGAGTAGATCGTATCCGGTCTTATCTCTCTGAAATTACAGCGGAG
129 ACAGAGTAGATCGCATCAGGTATTATCTCCCTGAGGTTACAGTGGAG
* ** * * ** **
6849022 CAGATTGAAG--TTGAT-A-ATCCTATCTCCCTGAGATTACAGTGGAGTGGATT-AAAATAAAG-
1 TAGACCGAAGAATT--TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCT--AGT
* * * * * *** * ** *
6849081 GATCTTATCTCTCTGA-AGTTACAGTAGAGTGGA-TCGCAT-CAGG-TCTTATCTCCCTGAGGTT
62 AATCCTATCTCCCTGAGA-TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTATCTGAAGTT
*** * * * *
6849142 ACAGTGGAGTAGAACGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAG
126 ACAACAGAGTAGATC---GCA--TCAGGTATTATCTCCCTGAGGTTACAGTGGAG
* ** * * * * *
6849197 CAGATTGAAGCCA---GAGATCTTATCTCCCTGAGATTATAACGGAGTAGATTGAAGCTAGTAAT
1 TAGACCGAAG-AATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAAT
* * * * *
6849259 CCTAACTCTCT-AAAGTTACAGTGGAGTGGATTAAAATAAAAGATCTTATCTATCTGAAGTTACA
65 CCTATCTCCCTGAGA-TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTATCTGAAGTTACA
**
6849323 GTAGAGTAGA
129 ACAGAGTAGA
6849333 AGATCTTATC
Statistics
Matches: 663, Mismatches: 125, Indels: 84
0.76 0.14 0.10
Matches are distributed among these distances:
168 4 0.01
169 2 0.00
170 61 0.09
171 4 0.01
172 70 0.11
173 91 0.14
174 222 0.33
175 132 0.20
176 7 0.01
177 36 0.05
178 29 0.04
179 5 0.01
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (175 bp):
TAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATC
CTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTATCTGAAGTTACAAC
AGAGTAGATCGCATCAGGTATTATCTCCCTGAGGTTACAGTGGAG
Found at i:6848758 original size:44 final size:44
Alignment explanation
Indices: 6848343--6849251 Score: 345
Period size: 44 Copynumber: 20.9 Consensus size: 44
6848333 GAAGAATTTT
* * *
6848343 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAG
1 AGATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCCAG
* ** *** *
6848387 TA-ATC-CATCTCCCTGAGATTACAGTGGAGCGGATT-AAAATAA
1 -AGATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCCAG
** *** * * * *
6848429 AGGATCTTATCTATCTGA-AGTTACAACAGAGTTGATCGCA-TCAG
1 A-GATCTTATCTCCCTGAGA-TTACAGTGGAGTAGATTGAAGCCAG
* * ** * *
6848473 -G-TATTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAG-AATTTC
1 AGATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCCA---G
* ** * *
6848517 AGATCTTATCTCCCTGATATTACAGCAGAGCAGA-TGAAGCTAG
1 AGATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCCAG
* ** *** *
6848560 TA-ATCCTATCTCCCTGAGATTACAGTGGAGCGGATT-AAAATAA
1 -AGATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCCAG
* ** * * *
6848603 AGGATCTTATCTCTCTGA-AGTTACAGCAGAGTAGATCGCA-TCAG
1 A-GATCTTATCTCCCTGAGA-TTACAGTGGAGTAGATTGAAGCCAG
* * ** *
6848647 -G-TCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAATTAC
1 AGATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAG--CCAG
*
6848691 AGATCTTATCTCCCTGAGGTTACAGTGGAGTAGATTGAAGCCAG
1 AGATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCCAG
* * * *
6848735 AGATCTTATCTCCTTGAGATTACAGCGGAGCAGATCT-AAGACA-
1 AGATCTTATCTCCCTGAGATTACAGTGGAGTAGAT-TGAAGCCAG
** * * * ** * ** *
6848778 CTATCCTATCTCCCTTAGATTACAGTGAAGCGGATTAAAGTAAC
1 AGATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCCAG
* * * * * *
6848822 AGATCTTATATCTCTGA-AGTTACAGTAGAGTAGATCGTATCC-G
1 AGATCTTATCTCCCTGAGA-TTACAGTGGAGTAGATTGAAGCCAG
* *
6848865 -G-TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAG-CAG
1 AGATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCCAG
* * * * * * * ** *
6848906 ATAATCCTATCTCCTTGAGATTATAGTGGAGTGGGTTAAAGTAAC
1 A-GATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCCAG
* * * * * *
6848951 AGATCTTATCTCTCTGA-AGTTATAGTAGAGTAGATCGTATCC-G
1 AGATCTTATCTCCCTGAGA-TTACAGTGGAGTAGATTGAAGCCAG
* * * * **
6848994 -G-TCTTATCTCTCTGAAATTACAGCGGAGCAGATTGAAG-TTG
1 AGATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCCAG
* * * *** *
6849035 ATAATCCTATCTCCCTGAGATTACAGTGGAGTGGATT-AAAATAA
1 A-GATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCCAG
* * * * * *
6849079 AGGATCTTATCTCTCTGA-AGTTACAGTAGAGTGGATCGCA-TCAG
1 A-GATCTTATCTCCCTGAGA-TTACAGTGGAGTAGATTGAAGCCAG
* ** * *
6849123 -G-TCTTATCTCCCTGAGGTTACAGTGGAGTAGAACGAAG-AATTTC
1 AGATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCCA---G
* *
6849167 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAG
1 AGATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCCAG
* **
6849211 AGATCTTATCTCCCTGAGATTATAACGGAGTAGATTGAAGC
1 AGATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGC
6849252 TAGTAATCCT
Statistics
Matches: 631, Mismatches: 181, Indels: 105
0.69 0.20 0.11
Matches are distributed among these distances:
40 1 0.00
41 144 0.23
42 13 0.02
43 99 0.16
44 263 0.42
45 14 0.02
46 96 0.15
47 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.29
Consensus pattern (44 bp):
AGATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCCAG
Found at i:6848769 original size:218 final size:218
Alignment explanation
Indices: 6848476--6848902 Score: 592
Period size: 218 Copynumber: 1.9 Consensus size: 218
6848466 GCATCAGGTA
*
6848476 TTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGATATTACA
1 TTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAA--TCAGATCTTATCTCCCTGAGATTACA
* *
6848541 GCAGAGCAGAT-GAAG-CTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAA-
64 GCAGAGCAGATCGAAGAC-ACT-ATCCTATCTCCCTGAGATTACAGTGAAGCGGATTAAAATAAC
* *
6848603 AGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTAC
127 A-GATCTTATATCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTAC
* *
6848668 AGTGGAGTAGATCGAAGAATTACAGATC
191 AGCGGAGCAGATCGAAGAATTACAGATC
** * * *
6848696 TTATCTCCCTGAGGTTACAGTGGAGTAGATTGAAGCCA-GAGATCTTATCTCCTTGAGATTACAG
1 TTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAG-AATCAGATCTTATCTCCCTGAGATTACAG
* * * *
6848760 CGGAGCAGATCTAAGACACTATCCTATCTCCCTTAGATTACAGTGAAGCGGATTAAAGTAACAGA
65 CAGAGCAGATCGAAGACACTATCCTATCTCCCTGAGATTACAGTGAAGCGGATTAAAATAACAGA
* * *
6848825 TCTTATATCTCTGAAGTTACAGTAGAGTAGATCGTATCCGGTCTTATCTCCCTGAGATTACAGCG
130 TCTTATATCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGCG
*
6848890 GAGCAGATTGAAG
195 GAGCAGATCGAAG
6848903 CAGATAATCC
Statistics
Matches: 183, Mismatches: 20, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
218 142 0.78
219 6 0.03
220 34 0.19
221 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (218 bp):
TTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATCAGATCTTATCTCCCTGAGATTACAGC
AGAGCAGATCGAAGACACTATCCTATCTCCCTGAGATTACAGTGAAGCGGATTAAAATAACAGAT
CTTATATCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGCGG
AGCAGATCGAAGAATTACAGATC
Found at i:6848954 original size:129 final size:129
Alignment explanation
Indices: 6848346--6849150 Score: 641
Period size: 129 Copynumber: 6.2 Consensus size: 129
6848336 GAATTTTAGA
*
6848346 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAG-TAATCC-ATCTCCCTGAGATTAC
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGC-AGATAATCCTATCTCCTTGAGATTAC
* * * ** * * *
6848409 AGTGGAGCGGATTAAAATAA-AGGATCTTATCTATCTGAAGTTACAACAGAGTTGATCGCATCAG
65 AGTGGAGTGGATTAAAGTAACA-GATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCCG
6848473 G
129 G
* * * * ** * ** * * *
6848474 TATTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGATATTA
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCAGAT-A-ATCCTATCTCCTTGAGATTA
** ** * ** * * * ** ***
6848539 CAGCAGAGCAGA-TGAAGCTAGTA-ATCCTATCTCCCTG-AGATTACAGTGGAGCGGATTAAAAT
64 CAGTGGAGTGGATTAAAG-TAACAGATCTTATCTCTCTGAAG-TTACAGTAGAGTAGA-TCGTAT
**
6848601 AAAGG
126 -CCGG
* * * * * * * * * *
6848606 ATCTTATCTCTCTGA-AGTTACAGCAGAGTAGATCGCATCAG---GTCTTATCTCCCTGAGGTTA
1 -TCTTATCTCCCTGAGA-TTACAGCGGAGCAGATTGAAGCAGATAATCCTATCTCCTTGAGATTA
* * * * * * * * * *
6848667 CAGTGGAGTAGATCGAAGAATTACAGATCTTATCTCCCTGAGGTTACAGTGGAGTAGATTGAAGC
64 CAGTGGAGTGGAT-TAA-AGTAACAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATC
6848732 CAGAG
127 C-G-G
* *
6848737 ATCTTATCTCCTTGAGATTACAGCGGAGCAGATCT-AAGACA-CT-ATCCTATCTCCCTT-AGAT
1 -TCTTATCTCCCTGAGATTACAGCGGAGCAGAT-TGAAG-CAGATAATCCTATCT-CCTTGAGAT
* * *
6848798 TACAGTGAAGCGGATTAAAGTAACAGATCTTATATCTCTGAAGTTACAGTAGAGTAGATCGTATC
62 TACAGTGGAGTGGATTAAAGTAACAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATC
6848863 CGG
127 CGG
*
6848866 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCAGATAATCCTATCTCCTTGAGATTATA
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCAGATAATCCTATCTCCTTGAGATTACA
* *
6848931 GTGGAGTGGGTTAAAGTAACAGATCTTATCTCTCTGAAGTTATAGTAGAGTAGATCGTATCCGG
66 GTGGAGTGGATTAAAGTAACAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCCGG
* * ** *
6848995 TCTTATCTCTCTGAAATTACAGCGGAGCAGATTGAAGTTGATAATCCTATCTCCCTGAGATTACA
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCAGATAATCCTATCTCCTTGAGATTACA
* * * *
6849060 GTGGAGTGGATTAAAATAA-AGGATCTTATCTCTCTGAAGTTACAGTAGAGTGGATCGCATCAGG
66 GTGGAGTGGATTAAAGTAACA-GATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCCGG
* *
6849124 TCTTATCTCCCTGAGGTTACAGTGGAG
1 TCTTATCTCCCTGAGATTACAGCGGAG
6849151 TAGAACGAAG
Statistics
Matches: 541, Mismatches: 107, Indels: 57
0.77 0.15 0.08
Matches are distributed among these distances:
127 4 0.01
128 98 0.18
129 217 0.40
130 35 0.06
131 123 0.23
132 10 0.02
133 51 0.09
134 3 0.01
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (129 bp):
TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCAGATAATCCTATCTCCTTGAGATTACA
GTGGAGTGGATTAAAGTAACAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCCGG
Found at i:6849381 original size:40 final size:40
Alignment explanation
Indices: 6849336--6849567 Score: 270
Period size: 40 Copynumber: 5.7 Consensus size: 40
6849326 GAGTAGAAGA
6849336 TCTTATCTCCCTAAGCAGTAGTGGAGTAGATCACATCAAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGTAGATCACATCAAG
* * * **
6849376 TCTTATCTCCCTAAGCAGTAGCGGAGCAGA-CGAAAGAAACAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGTAGATC-ACA-TCA-AG
*
6849418 ATCTTCTCTCCCTAAGCAGTAGTGGAGTAGATCACATCAAG
1 -TCTTATCTCCCTAAGCAGTAGTGGAGTAGATCACATCAAG
* * * **
6849459 TTTTATCTCCCTAAGCAGTAGTGGAGCAGA-CGAAAGAAACAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGTAGATC-ACA-TCA-AG
6849501 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCACATCAAG
1 -TCTTATCTCCCTAAGCAGTAGTGGAGTAGATCACATCAAG
*
6849542 TTTTATCTCCCTAAGCAGTAGTGGAG
1 TCTTATCTCCCTAAGCAGTAGTGGAG
6849568 CAGGTCAAAG
Statistics
Matches: 159, Mismatches: 23, Indels: 20
0.79 0.11 0.10
Matches are distributed among these distances:
39 2 0.01
40 84 0.53
41 6 0.04
42 6 0.04
43 59 0.37
44 2 0.01
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (40 bp):
TCTTATCTCCCTAAGCAGTAGTGGAGTAGATCACATCAAG
Found at i:6849438 original size:83 final size:83
Alignment explanation
Indices: 6849333--6849967 Score: 474
Period size: 83 Copynumber: 7.4 Consensus size: 83
6849323 GTAGAGTAGA
* *
6849333 AGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGC
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCACATCAAGTTTTATCTCCCTAAGCAGTAGT
6849398 GGAGCAGACGAAAGAAAC
66 GGAGCAGACGAAAGAAAC
*
6849416 AGATCTTCTCTCCCTAAGCAGTAGTGGAGTAGATCACATCAAGTTTTATCTCCCTAAGCAGTAGT
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCACATCAAGTTTTATCTCCCTAAGCAGTAGT
6849481 GGAGCAGACGAAAGAAAC
66 GGAGCAGACGAAAGAAAC
6849499 AGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCACATCAAGTTTTATCTCCCTAAGCAGTAGT
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCACATCAAGTTTTATCTCCCTAAGCAGTAGT
* ***
6849564 GGAGCAGGTC-AAAGATGGT
66 GGAGCA-GACGAAAGA-AAC
* * * * ** * * * *
6849583 TGATCTTACCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCAAATCTTATCTCTCTAAGCAA
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGTAGA-T---CACATCAAGTTTTATCTCCCTAAGCAG
* * *** * *
6849648 TAGTGAAGTAGATTTAAGCCACC
62 TAGTGGAGCAGACGAAAG-AAAC
* * * ** ** **
6849671 AG-TCTTATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGGTAGATCCTATCTTTCTAAGCAG
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATC--ACAT-CAAG-TTTTATCTCCCTAAGCAG
* ***
6849735 TAGTGGAGCAGGTCG-AAGATGGT
62 TAGTGGAGCA-GACGAAAGA-AAC
* * * ** *
6849758 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGGTAGATCTTATCTCCCTAAGCAG
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATC--ACAT-CAAG-TTTTATCTCCCTAAGCAG
**
6849823 TAGTGGAGCAGATCG-AAGACGGC
62 TAGTGGAGCAGA-CGAAAGA-AAC
* * ** * * *
6849846 -GAATCTTATCTTCCTAAGCAGTAGTGAAACAGATTTAAGCCA-CCAGTTCTATCTCCCTAAGCA
1 AG-ATCTTATCTCCCTAAGCAGTAGTGGAGTAGA--TCA--CATCAAGTTTTATCTCCCTAAGCA
* * ***
6849909 GTAATGGAGCAGGTC-AAAGATGGT
61 GTAGTGGAGCA-GACGAAAGA-AAC
6849933 AGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATC
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATC
6849968 GAAGACGACA
Statistics
Matches: 453, Mismatches: 75, Indels: 46
0.79 0.13 0.08
Matches are distributed among these distances:
83 155 0.34
84 32 0.07
85 3 0.01
86 2 0.00
87 118 0.26
88 141 0.31
90 2 0.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (83 bp):
AGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCACATCAAGTTTTATCTCCCTAAGCAGTAGT
GGAGCAGACGAAAGAAAC
Found at i:6849611 original size:44 final size:44
Alignment explanation
Indices: 6849333--6850008 Score: 490
Period size: 44 Copynumber: 15.7 Consensus size: 44
6849323 GTAGAGTAGA
* * * **
6849333 AGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATC--ACAT-CA
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGGT
* * ***
6849374 AG-TCTTATCTCCCTAAGCAGTAGCGGAGCA-GACGAAAGA-AAC
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTCG-AAGATGGT
* * * * **
6849416 AGATCTTCTCTCCCTAAGCAGTAGTGGAGTAGATC--ACAT-CA
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGGT
* * ***
6849457 AG-TTTTATCTCCCTAAGCAGTAGTGGAGCA-GACGAAAGA-AAC
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTCG-AAGATGGT
* * * **
6849499 AGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATC--ACAT-CA
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGGT
* *
6849540 AG-TTTTATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGGT
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGGT
* * * * * *
6849583 TGATCTTACCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGC
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGGT
* * * * * * ** *****
6849627 AAATCTTATCTCTCTAAGCAATAGTGAAGTAGATTTAAGCCACC
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGGT
6849671 AG-TCTTATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGGT
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGGT
* **
6849714 AGATCCTATCTTTCTAAGCAGTAGTGGAGCAGGTCGAAGATGGT
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGGT
*
6849758 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGGT
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGGT
* *
6849802 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGG-
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGGT
* * * * * ** *****
6849845 CGAATCTTATCTTCCTAAGCAGTAGTGAAACAGATTTAAGCCACC
1 AG-ATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGGT
* * *
6849890 AGTTC-TATCTCCCTAAGCAGTAATGGAGCAGGTCAAAGATGGT
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGGT
* * * **
6849933 AGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGAC
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGGT
* * * * *
6849977 AAATCTTATATTCCTAAGCAATAGTGAAGCAG
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAG
6850009 ATTTAAGCCA
Statistics
Matches: 498, Mismatches: 115, Indels: 41
0.76 0.18 0.06
Matches are distributed among these distances:
39 2 0.00
40 80 0.16
41 10 0.02
42 11 0.02
43 114 0.23
44 280 0.56
45 1 0.00
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.25
Consensus pattern (44 bp):
AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGGT
Found at i:6849789 original size:219 final size:219
Alignment explanation
Indices: 6849457--6850008 Score: 717
Period size: 219 Copynumber: 2.5 Consensus size: 219
6849447 GATCACATCA
* * * *** *
6849457 AGTTTTATCTCCCTAAGCAGTAGTGGAGCA-GACGAAAGA-AACAGATCTTATCTCCCTAAGCAG
1 AGTTCTATCTCCCTAAGCAGTAATGGAGCAGGTC-AAAGATGGTAGATCCTATCTCCCTAAGCAG
* * *
6849520 TAGTGGAGTAGATC----AC-ATCAAGTTTTATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGAT
65 TAGTGGAGCAGATCGAAGACGA-CAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGAT
* *
6849580 GGTTGATCTTACCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCAAATCTTATC-TCTCTAA
129 GGTAGATCTTACCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTC-CTAA
**
6849644 GCAATAGTGAAGTAGATTTAAGCCACC
193 GCAATAGTGAAACAGATTTAAGCCACC
* * **
6849671 AG-TCTTATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGGTAGATCCTATCTTTCTAAGCAG
1 AGTTC-TATCTCCCTAAGCAGTAATGGAGCAGGTCAAAGATGGTAGATCCTATCTCCCTAAGCAG
* * ** *
6849735 TAGTGGAGCAGGTCGAAGATGGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATG
65 TAGTGGAGCAGATCGAAGACGACAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATG
* *
6849800 GTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCTAAGC
130 GTAGATCTTACCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTCCTAAGC
*
6849865 AGTAGTGAAACAGATTTAAGCCACC
195 AATAGTGAAACAGATTTAAGCCACC
*
6849890 AGTTCTATCTCCCTAAGCAGTAATGGAGCAGGTCAAAGATGGTAGATCTTATCTCCCTAAGCAGT
1 AGTTCTATCTCCCTAAGCAGTAATGGAGCAGGTCAAAGATGGTAGATCCTATCTCCCTAAGCAGT
* * * * *
6849955 AGTGGAGTAGATCGAAGACGACAAATCTTATATTCCTAAGCAATAGTGAAGCAG
66 AGTGGAGCAGATCGAAGACGACAAATCTTATCTCCCTAAGCAGTAGTGGAGCAG
6850009 ATTTAAGCCA
Statistics
Matches: 289, Mismatches: 39, Indels: 15
0.84 0.11 0.04
Matches are distributed among these distances:
213 1 0.00
214 31 0.11
215 32 0.11
219 221 0.76
220 4 0.01
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (219 bp):
AGTTCTATCTCCCTAAGCAGTAATGGAGCAGGTCAAAGATGGTAGATCCTATCTCCCTAAGCAGT
AGTGGAGCAGATCGAAGACGACAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGG
TAGATCTTACCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTCCTAAGCA
ATAGTGAAACAGATTTAAGCCACC
Found at i:6849950 original size:131 final size:131
Alignment explanation
Indices: 6849379--6850051 Score: 542
Period size: 131 Copynumber: 5.2 Consensus size: 131
6849369 CATCAAGTCT
* * *** *
6849379 TATCTCCCTAAGCAGTAGCGGAGCA-GACGAAAGA-AACAGATCTTCTCTCCCTAAGCAGTAGTG
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTC-AAAGATGGTAGATCTTATCTCCCTAAGCAGTAGTG
* ** * * * * *** * * *
6849442 GAGTAGATC----ACATCAAGTTTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAG-AAACAGA
65 GAGCAGATCGAAGACGGCAAATCTTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCAGT
6849502 TC
130 TC
* * * ** *
6849504 TTATCTCCCTAAGCAGTAGTGGAGTAGATC--ACAT-CAAG-TTTTATCTCCCTAAGCAGTAGTG
1 -TATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGGTAGATCTTATCTCCCTAAGCAGTAGTG
* * * *** * * * * * ** **
6849565 GAGCAGGTCAAAGATGGTTGATCTTACCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCAAA
65 GAGCAGATCGAAGACGGCAAATCTTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCAGT
6849630 TC
130 TC
* * * * * ** *****
6849632 TTATCTCTCTAAGCAATAGTGAAGTAGATTTAAGCCACCAG-TCTTATCTCCCTAAGCAGTAGTG
1 -TATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGGTAGATCTTATCTCCCTAAGCAGTAGTG
* * * * * * * * ** ***** *
6849696 GAGCAGGTCGAAGATGGTAGATCCTATCTTTCTAAGCAGTAGTGGAGCAGGTCGAAGATGGTAGA
65 GAGCAGATCGAAGACGGCAAATCTTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCAGT
6849761 TC
130 TC
6849763 TTATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGGTAGATCTTATCTCCCTAAGCAGTAGTG
1 -TATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGGTAGATCTTATCTCCCTAAGCAGTAGTG
* *
6849828 GAGCAGATCGAAGACGGCGAATCTTATCTTCCTAAGCAGTAGTGAAACAGATTTAAGCCACCAGT
65 GAGCAGATCGAAGACGGCAAATCTTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCAGT
6849893 TC
130 TC
*
6849895 TATCTCCCTAAGCAGTAATGGAGCAGGTCAAAGATGGTAGATCTTATCTCCCTAAGCAGTAGTGG
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGGTAGATCTTATCTCCCTAAGCAGTAGTGG
* * * * *
6849960 AGTAGATCGAAGACGACAAATCTTATATTCCTAAGCAATAGTGAAGCAGATTTAAGCCACCAGTC
66 AGCAGATCGAAGACGGCAAATCTTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCAGTT
6850025 C
131 C
6850026 TATCTCCCTAAGCAGTAGTGGAGCAG
1 TATCTCCCTAAGCAGTAGTGGAGCAG
6850052 ACAGAATAAA
Statistics
Matches: 450, Mismatches: 86, Indels: 17
0.81 0.16 0.03
Matches are distributed among these distances:
123 28 0.06
124 4 0.01
126 23 0.05
127 33 0.07
128 31 0.07
130 1 0.00
131 258 0.57
132 72 0.16
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (131 bp):
TATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGGTAGATCTTATCTCCCTAAGCAGTAGTGG
AGCAGATCGAAGACGGCAAATCTTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCAGTT
C
Found at i:6852073 original size:16 final size:16
Alignment explanation
Indices: 6852052--6852090 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
6852042 AACGTATACA
6852052 TATATATACATACTTT
1 TATATATACATACTTT
*
6852068 TATATATACATGCTTT
1 TATATATACATACTTT
*
6852084 CATATAT
1 TATATAT
6852091 CTCCATAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.36, C:0.13, G:0.03, T:0.49
Consensus pattern (16 bp):
TATATATACATACTTT
Found at i:6852090 original size:34 final size:34
Alignment explanation
Indices: 6852050--6852114 Score: 85
Period size: 34 Copynumber: 1.9 Consensus size: 34
6852040 ATAACGTATA
*
6852050 CATATATATACATACTTTTATATATACATGCTTT
1 CATATATATACATAATTTTATATATACATGCTTT
* * * *
6852084 CATATATCTCCATAATTTTATGTATATATGC
1 CATATATATACATAATTTTATATATACATGC
6852115 ATATATATAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 26 1.00
ACGTcount: A:0.34, C:0.15, G:0.05, T:0.46
Consensus pattern (34 bp):
CATATATATACATAATTTTATATATACATGCTTT
Found at i:6853018 original size:15 final size:13
Alignment explanation
Indices: 6852992--6853017 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
6852982 TCAGGTTAGG
6852992 AGTGAGAGATATA
1 AGTGAGAGATATA
6853005 AGTGAGAGATATA
1 AGTGAGAGATATA
6853018 TGAATAATGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.31, T:0.23
Consensus pattern (13 bp):
AGTGAGAGATATA
Found at i:6855315 original size:20 final size:20
Alignment explanation
Indices: 6855290--6855329 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
6855280 AAATATTTTC
*
6855290 AGTAAATCATTTTCTAGAAA
1 AGTAAATCATTTTCCAGAAA
6855310 AGTAAATCATTTTCCAGAAA
1 AGTAAATCATTTTCCAGAAA
6855330 TCATTTTACG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.45, C:0.12, G:0.10, T:0.33
Consensus pattern (20 bp):
AGTAAATCATTTTCCAGAAA
Found at i:6855864 original size:43 final size:43
Alignment explanation
Indices: 6855816--6855901 Score: 113
Period size: 43 Copynumber: 2.0 Consensus size: 43
6855806 TGGTGAGATC
* *
6855816 GACAGTGA-GAAGTGAAAGGGAAGGGAGC-AGTGGTGGGGGTTGG
1 GACAGTGATG-AGTGAAAGGGAAGGCAGCGA-CGGTGGGGGTTGG
*
6855859 GACAGTGATGAGTGAGAGGGAAGGCAGCGACGGTGGGGGTTGG
1 GACAGTGATGAGTGAAAGGGAAGGCAGCGACGGTGGGGGTTGG
6855902 ACAAAATAGT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
43 36 0.95
44 2 0.05
ACGTcount: A:0.26, C:0.07, G:0.53, T:0.14
Consensus pattern (43 bp):
GACAGTGATGAGTGAAAGGGAAGGCAGCGACGGTGGGGGTTGG
Found at i:6862105 original size:2 final size:2
Alignment explanation
Indices: 6862098--6862124 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
6862088 CCTGTCTTAA
6862098 AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC A
6862125 TTTATTCGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:6864081 original size:4 final size:4
Alignment explanation
Indices: 6864072--6864104 Score: 57
Period size: 4 Copynumber: 8.2 Consensus size: 4
6864062 TTTCTTTTCC
*
6864072 TATG TATG TATG AATG TATG TATG TATG TATG T
1 TATG TATG TATG TATG TATG TATG TATG TATG T
6864105 GCATTCTTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.27, C:0.00, G:0.24, T:0.48
Consensus pattern (4 bp):
TATG
Found at i:6869562 original size:2 final size:2
Alignment explanation
Indices: 6869555--6869580 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
6869545 CTATTTGTAT
6869555 GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA
6869581 ATCTTACATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:6886625 original size:3 final size:3
Alignment explanation
Indices: 6886617--6886644 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
6886607 ATTATGCCAA
6886617 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
6886645 GACTATAGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:6886848 original size:19 final size:19
Alignment explanation
Indices: 6886824--6886877 Score: 99
Period size: 19 Copynumber: 2.8 Consensus size: 19
6886814 AATCTTCAAG
6886824 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
6886843 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
6886862 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
6886878 AAATATGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:6886868 original size:38 final size:40
Alignment explanation
Indices: 6886824--6886900 Score: 113
Period size: 38 Copynumber: 1.9 Consensus size: 40
6886814 AATCTTCAAG
6886824 GATATGCAATCTTAG-ATATGA-TATGTAATCTTAGATAT
1 GATATGCAATCTTAGAATATGATTATGTAATCTTAGATAT
*
6886862 GATATGCAATCTTAGAAAATATGATTTTGTAATCTTAGA
1 GATATGCAATCTTAG--AATATGATTATGTAATCTTAGA
6886901 GATTTAATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
38 15 0.44
41 6 0.18
42 13 0.38
ACGTcount: A:0.38, C:0.08, G:0.16, T:0.39
Consensus pattern (40 bp):
GATATGCAATCTTAGAATATGATTATGTAATCTTAGATAT
Found at i:6887385 original size:17 final size:17
Alignment explanation
Indices: 6887363--6887397 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
6887353 TTTATATACA
* *
6887363 TATATATATTTACATTT
1 TATATACATATACATTT
6887380 TATATACATATACATTT
1 TATATACATATACATTT
6887397 T
1 T
6887398 TTATTTCCTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.37, C:0.09, G:0.00, T:0.54
Consensus pattern (17 bp):
TATATACATATACATTT
Found at i:6888988 original size:7 final size:7
Alignment explanation
Indices: 6888978--6889003 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
6888968 ATTTACACCT
6888978 TAAACCC
1 TAAACCC
6888985 TAAACCC
1 TAAACCC
6888992 TAAACCC
1 TAAACCC
6888999 TAAAC
1 TAAAC
6889004 TTTTTTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.46, C:0.38, G:0.00, T:0.15
Consensus pattern (7 bp):
TAAACCC
Found at i:6909373 original size:22 final size:23
Alignment explanation
Indices: 6909327--6909373 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
6909317 TCTTCCTTTA
*
6909327 TTTTTTTCAACAATTTCATTTAT
1 TTTTTTTCAACAATTTCATTAAT
6909350 TTTTCTTTCAAC-ATTT-ATTAAT
1 TTTT-TTTCAACAATTTCATTAAT
6909372 TT
1 TT
6909374 ATTGGGGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 7 0.32
23 8 0.36
24 7 0.32
ACGTcount: A:0.26, C:0.13, G:0.00, T:0.62
Consensus pattern (23 bp):
TTTTTTTCAACAATTTCATTAAT
Found at i:6914620 original size:22 final size:21
Alignment explanation
Indices: 6914581--6914621 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
6914571 GAGTGGACAA
*
6914581 TTTAAAAAAAAGCGAAAACCC
1 TTTAAAAAAAAGCAAAAACCC
*
6914602 TTTAAAAATAAAGTAAAAAC
1 TTTAAAAA-AAAGCAAAAAC
6914622 ACAGAGGTCC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.61, C:0.12, G:0.07, T:0.20
Consensus pattern (21 bp):
TTTAAAAAAAAGCAAAAACCC
Done.