Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62811768
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 736185 characters in sequence are not A, C, G, or T
File 27 of 211
Found at i:7301800 original size:129 final size:129
Alignment explanation
Indices: 7301570--7301910 Score: 472
Period size: 129 Copynumber: 2.6 Consensus size: 129
7301560 CGAAGAATTG
*
7301570 CAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGTTAGTAATCCTATCTCCCTGAGAT
1 CAGATCTTATCTCCCTGAGATTACAGCGAAGCAGATTGAAGTTAGTAATCCTATCTCCCTGAGAT
* * * *
7301635 TACAGTGGAGCGGATTAAAATTAAAGATCTTATCTCTCTAAAGTTACAGTAGAGTATATCGTGT
66 TACAGTGGAGCGGATTAAAATGAAAGATCTTATCTCTCTAAAGTTACAGCAGAGTAGATCATGT
7301699 CAGATCTTATCTCCCTGAGATTACAGCGAAGCAGATTGAAGTTAGTAATCCTATCTCCCTGAGAT
1 CAGATCTTATCTCCCTGAGATTACAGCGAAGCAGATTGAAGTTAGTAATCCTATCTCCCTGAGAT
* * * *
7301764 TACGGTGGAGTGGATTAAAATGAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCATGT
66 TACAGTGGAGCGGATTAAAATGAAAGATCTTATCTCTCTAAAGTTACAGCAGAGTAGATCATGT
* * * * *
7301828 CAGGTCTTATTTCCCTGAGATTACAGTGGAA-CAGACTGAAGAATT--TCAGATCTTATCTCCCT
1 CAGATCTTATCTCCCTGAGATTACAG-CGAAGCAGATTGAAG--TTAGT-A-ATCCTATCTCCCT
* *
7301890 GAGATTACAGCGGAGCAGATT
61 GAGATTACAGTGGAGCGGATT
7301911 GAAGCTAGTA
Statistics
Matches: 189, Mismatches: 18, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
129 154 0.81
130 4 0.02
131 31 0.16
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.30
Consensus pattern (129 bp):
CAGATCTTATCTCCCTGAGATTACAGCGAAGCAGATTGAAGTTAGTAATCCTATCTCCCTGAGAT
TACAGTGGAGCGGATTAAAATGAAAGATCTTATCTCTCTAAAGTTACAGCAGAGTAGATCATGT
Found at i:7301883 original size:175 final size:175
Alignment explanation
Indices: 7301698--7302027 Score: 570
Period size: 175 Copynumber: 1.9 Consensus size: 175
7301688 GTATATCGTG
*
7301698 TCAGATCTTATCTCCCTGAGATTACAGCGAAGCAGATTGAAGTTAGTAATCCTATCTCCCTGAGA
1 TCAGATCTTATCTCCCTGAGATTACAGCGAAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGA
* * *
7301763 TTACGGTGGAGTGGATTAAAATGAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCATGT
66 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCATGT
* *
7301828 CAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACTGAAGAATT
131 CAGATCTTATCTCCCTGAGATTACAGTGGAACAGACTGAAGAATT
*
7301873 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGA
1 TCAGATCTTATCTCCCTGAGATTACAGCGAAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGA
* **
7301938 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATTGTGT
66 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCATGT
7302003 CAGATCTTATCTCCCTGAGATTACA
131 CAGATCTTATCTCCCTGAGATTACA
7302028 ACGGTGCAGA
Statistics
Matches: 145, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
175 145 1.00
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (175 bp):
TCAGATCTTATCTCCCTGAGATTACAGCGAAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGA
TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCATGT
CAGATCTTATCTCCCTGAGATTACAGTGGAACAGACTGAAGAATT
Found at i:7302037 original size:129 final size:129
Alignment explanation
Indices: 7301873--7302295 Score: 693
Period size: 129 Copynumber: 3.3 Consensus size: 129
7301863 CTGAAGAATT
*
7301873 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGA
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGA
*
7301938 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATTGTG
66 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTG
* * *
7302002 TCAGATCTTATCTCCCTGAGATTACAACGGTGCAGATTGAAGTTAGTAATCCTATCTCCCTGAGA
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGA
*
7302067 TTACAGTGGAGTGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTG
66 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTG
* * * * *
7302131 TCAAATCTTATCTTCCTGAGATTACAGCAGAGCAGATTAAAGATAGTAATCCTATCTCCCCGAGA
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGA
* * *
7302196 TTACAGTAGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCGTA
66 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTG
* * *
7302260 TCAGGTCTTATCTCCCTGAGGTTACAGTGGAGCAGA
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGA
7302296 ATAAAGCAAC
Statistics
Matches: 271, Mismatches: 23, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
129 271 1.00
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (129 bp):
TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGA
TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTG
Found at i:7302078 original size:304 final size:304
Alignment explanation
Indices: 7301524--7302157 Score: 1092
Period size: 304 Copynumber: 2.1 Consensus size: 304
7301514 GTTCATTATA
*
7301524 CAGGTCTTATTTCCCTGAGATTACGGTGGAACAGACCGAAGAATTGCAGATCTTATCTCCCTGAG
1 CAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTGCAGATCTTATCTCCCTGAG
*
7301589 ATTACAGCGGAGCAGATTGAAGTTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAA
66 ATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAA
*
7301654 ATTAAAGATCTTATCTCTCTAAAGTTACAGTAGAGTATATCGTGTCAGATCTTATCTCCCTGAGA
131 ATTAAAGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGTGTCAGATCTTATCTCCCTGAGA
* *
7301719 TTACAGCGAAGCAGATTGAAGTTAGTAATCCTATCTCCCTGAGATTACGGTGGAGTGGATTAAAA
196 TTACAACGAAGCAGATTGAAGTTAGTAATCCTATCTCCCTGAGATTACAGTGGAGTGGATTAAAA
*
7301784 TGAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCATGT
261 TAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCATGT
* *
7301828 CAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACTGAAGAATTTCAGATCTTATCTCCCTGAG
1 CAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTGCAGATCTTATCTCCCTGAG
7301893 ATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAA
66 ATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAA
* *
7301958 A-TAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATTGTGTCAGATCTTATCTCCCTGAG
131 ATTAAA-GATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGTGTCAGATCTTATCTCCCTGAG
**
7302022 ATTACAACGGTGCAGATTGAAGTTAGTAATCCTATCTCCCTGAGATTACAGTGGAGTGGATTAAA
195 ATTACAACGAAGCAGATTGAAGTTAGTAATCCTATCTCCCTGAGATTACAGTGGAGTGGATTAAA
* *
7302087 ATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTGT
260 ATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCATGT
**
7302132 CAAATCTTATCTT-CCTGAGATTACAG
1 CAGGTCTTAT-TTCCCTGAGATTACAG
7302158 CAGAGCAGAT
Statistics
Matches: 312, Mismatches: 16, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
303 4 0.01
304 306 0.98
305 2 0.01
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (304 bp):
CAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTGCAGATCTTATCTCCCTGAG
ATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAA
ATTAAAGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGTGTCAGATCTTATCTCCCTGAGA
TTACAACGAAGCAGATTGAAGTTAGTAATCCTATCTCCCTGAGATTACAGTGGAGTGGATTAAAA
TAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCATGT
Found at i:7307211 original size:3 final size:3
Alignment explanation
Indices: 7307196--7307230 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
7307186 TAATGAGACA
*
7307196 TCC TCC TCT TCC TCC TCC TCC TCC TCC TCC TCC TC
1 TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC TC
7307231 ATCTTCATCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.00, C:0.63, G:0.00, T:0.37
Consensus pattern (3 bp):
TCC
Found at i:7318455 original size:26 final size:26
Alignment explanation
Indices: 7318424--7318484 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
7318414 ATAAGAGCCA
* * *
7318424 TAATCAGGAAGTTTACAAAGAAATTT
1 TAATCAGGAAGATCACAAAGAAACTT
* **
7318450 TAATCAGAAAGATCACAAAGAGCCTT
1 TAATCAGGAAGATCACAAAGAAACTT
7318476 TAATCAGGA
1 TAATCAGGA
7318485 GCTCTAAATA
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.46, C:0.13, G:0.16, T:0.25
Consensus pattern (26 bp):
TAATCAGGAAGATCACAAAGAAACTT
Found at i:7319736 original size:51 final size:50
Alignment explanation
Indices: 7319608--7319890 Score: 256
Period size: 51 Copynumber: 5.6 Consensus size: 50
7319598 AAAGTGATGG
* * * * * *
7319608 TCACGTGTCTAGTACTATGTGTAGGCTACTACGTGTACCAGA-ATGATAGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATA-GTTCGA
* * * * *
7319658 TCGCATGTGTAG-AGTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAG-TTCGA
* *
7319708 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGAATGATAGGTCG-
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACC-G---GATAGTTCGA
* * *
7319761 T-A--TGTGTAGTACTATGTGCAGGCTACTATGCGTATCGGATAGCTTCGA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAG-TTCGA
* *
7319809 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATAGTGAT-GG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGT--TCGA
* *
7319860 TCACATGTGTAGTACTATGTGCATGCTACTA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTA
7319891 TGTGAATCCG
Statistics
Matches: 191, Mismatches: 28, Indels: 27
0.78 0.11 0.11
Matches are distributed among these distances:
46 5 0.03
47 3 0.02
48 1 0.01
49 27 0.14
50 53 0.28
51 90 0.47
52 3 0.02
53 1 0.01
54 3 0.02
55 5 0.03
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.31
Consensus pattern (50 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTTCGA
Found at i:7319825 original size:101 final size:101
Alignment explanation
Indices: 7319608--7319892 Score: 457
Period size: 101 Copynumber: 2.8 Consensus size: 101
7319598 AAAGTGATGG
* *
7319608 TCACGTGTCTAGTACTATGTGTAGGCTACTACGTGTACCAGAATGATAGGTCGCATGTGTAG-AG
1 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGAATGATAGGTCGCATGTGTAGTAC
7319672 TATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
66 TATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
*
7319708 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGAATGATAGGTCGTATGTGTAGTAC
1 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGAATGATAGGTCGCATGTGTAGTAC
*
7319773 TATGTGCAGGCTACTATGCGTATCGGATAGCTTCGA
66 TATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
* * * *
7319809 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATAGTGAT-GGTCACATGTGTAGT
1 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGA-A-TGATAGGTCGCATGTGTAGT
*
7319873 ACTATGTGCATGCTACTATG
64 ACTATGTGCAGGCTACTATG
7319893 TGAATCCGCA
Statistics
Matches: 172, Mismatches: 10, Indels: 4
0.92 0.05 0.02
Matches are distributed among these distances:
100 60 0.35
101 75 0.44
102 33 0.19
103 4 0.02
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.31
Consensus pattern (101 bp):
TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGAATGATAGGTCGCATGTGTAGTAC
TATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
Found at i:7319894 original size:26 final size:26
Alignment explanation
Indices: 7319814--7319894 Score: 71
Period size: 26 Copynumber: 3.2 Consensus size: 26
7319804 TTCGATCACG
*
7319814 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCATGCTACTA
* * *
7319840 CGTGTA-T-CGGATAGTG-ATGGTCAC-A
1 TGTGTAGTAC-TAT-GTGCATGCT-ACTA
7319865 TGTGTAGTACTATGTGCATGCTACTA
1 TGTGTAGTACTATGTGCATGCTACTA
7319891 TGTG
1 TGTG
7319895 AATCCGCATC
Statistics
Matches: 41, Mismatches: 7, Indels: 14
0.66 0.11 0.23
Matches are distributed among these distances:
24 1 0.02
25 17 0.41
26 22 0.54
27 1 0.02
ACGTcount: A:0.22, C:0.15, G:0.28, T:0.35
Consensus pattern (26 bp):
TGTGTAGTACTATGTGCATGCTACTA
Found at i:7320017 original size:41 final size:42
Alignment explanation
Indices: 7319902--7320028 Score: 161
Period size: 43 Copynumber: 3.0 Consensus size: 42
7319892 GTGAATCCGC
* *
7319902 ATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCACCAT
1 ATCATTGATTAT-AAGGTGGTTGCTAAGTGCTGATTCCACCGT
* *
7319945 ATCCTTGACTGTGA-AAGG-GGTTGCTATGTGCTGATTCC-CCGT
1 ATCATTGA-T-T-ATAAGGTGGTTGCTAAGTGCTGATTCCACCGT
7319987 ATCATTGATTATAAGGTGGTTGCTAAGTGCTGATTCCACCGT
1 ATCATTGATTATAAGGTGGTTGCTAAGTGCTGATTCCACCGT
7320029 GTGACGGTTA
Statistics
Matches: 72, Mismatches: 6, Indels: 13
0.79 0.07 0.14
Matches are distributed among these distances:
39 1 0.01
40 5 0.07
41 20 0.28
42 14 0.19
43 26 0.36
44 4 0.06
45 1 0.01
46 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.34
Consensus pattern (42 bp):
ATCATTGATTATAAGGTGGTTGCTAAGTGCTGATTCCACCGT
Found at i:7324756 original size:19 final size:22
Alignment explanation
Indices: 7324717--7324759 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
7324707 AAAGCAAGGC
7324717 AATAATAATAAATAGATAAATA
1 AATAATAATAAATAGATAAATA
7324739 AATAATAA-AAATA-A-AAATA
1 AATAATAATAAATAGATAAATA
7324758 AA
1 AA
7324760 AAAATCCAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 7 0.33
20 1 0.05
21 5 0.24
22 8 0.38
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.23
Consensus pattern (22 bp):
AATAATAATAAATAGATAAATA
Found at i:7336111 original size:43 final size:42
Alignment explanation
Indices: 7336064--7336334 Score: 296
Period size: 43 Copynumber: 6.3 Consensus size: 42
7336054 GCGCCGGACA
* *
7336064 AAACGCTGCTAAAGACCAGGACCTTTAGCGGCGCTTTTCCTAC
1 AAACGCCGCTAAAGACCAGGACCTTTAGCGACGCTTTTCC-AC
7336107 AAACGCCGCTAAAGACCAGGACCTTTAGCGACGCTTTTCCCAC
1 AAACGCCGCTAAAGACCAGGACCTTTAGCGACGCTTTT-CCAC
* **
7336150 AAACGCCGCTAAAGACCAGGACCTTTAGCGGCAATTTTCCCAC
1 AAACGCCGCTAAAGACCAGGACCTTTAGCGACGCTTTT-CCAC
** * * *
7336193 AAGTGTCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTTCCAC
1 AAACGCCGCTAAAGACCAGGACCTTTAGCGACGC-TTTTCCAC
* * *
7336236 AAACGCCGCTAAAGACCTA-GACCTATAGCAACACTTTTTCCAC
1 AAACGCCGCTAAAGACC-AGGACCTTTAGCGACGC-TTTTCCAC
* * *
7336279 AAACGCCGCTATAG-CTCAAGACCTTTAGCGACGCTTTGAT-TAC
1 AAACGCCGCTAAAGAC-CAGGACCTTTAGCGACGCTTT--TCCAC
7336322 AAACGCCGCTAAA
1 AAACGCCGCTAAA
7336335 AGTACTATTA
Statistics
Matches: 197, Mismatches: 24, Indels: 14
0.84 0.10 0.06
Matches are distributed among these distances:
42 5 0.03
43 184 0.93
44 8 0.04
ACGTcount: A:0.30, C:0.31, G:0.18, T:0.21
Consensus pattern (42 bp):
AAACGCCGCTAAAGACCAGGACCTTTAGCGACGCTTTTCCAC
Found at i:7336164 original size:86 final size:85
Alignment explanation
Indices: 7336064--7336334 Score: 330
Period size: 86 Copynumber: 3.2 Consensus size: 85
7336054 GCGCCGGACA
* * *
7336064 AAACGCTGCTAAAGACCAGGACCTTTAGCGGCGCTTTTCCTACAAACGCCGCTAAAGACCAGGAC
1 AAACGCCGCTAAAGACCAGGACCTTTAGCGGCACTTTTCC-ACAAACGCCGCTAAAGACCAAGAC
*
7336129 CTTTAGCGACGCTTTTCCCAC
65 CTTTAGCGACGCTTTTACCAC
* ** *
7336150 AAACGCCGCTAAAGACCAGGACCTTTAGCGGCAATTTTCCCACAAGTGTCGCTAAAGACCAAGAC
1 AAACGCCGCTAAAGACCAGGACCTTTAGCGGCACTTTT-CCACAAACGCCGCTAAAGACCAAGAC
* *
7336215 CTTTAGCGGCGCTTTTTCCAC
65 CTTTAGCGACGCTTTTACCAC
* ** *
7336236 AAACGCCGCTAAAGACCTA-GACCTATAGCAACACTTTTTCCACAAACGCCGCTATAG-CTCAAG
1 AAACGCCGCTAAAGACC-AGGACCTTTAGCGGCAC-TTTTCCACAAACGCCGCTAAAGAC-CAAG
* **
7336299 ACCTTTAGCGACGCTTTGATTAC
63 ACCTTTAGCGACGCTTTTACCAC
7336322 AAACGCCGCTAAA
1 AAACGCCGCTAAA
7336335 AGTACTATTA
Statistics
Matches: 159, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
85 1 0.01
86 151 0.95
87 7 0.04
ACGTcount: A:0.30, C:0.31, G:0.18, T:0.21
Consensus pattern (85 bp):
AAACGCCGCTAAAGACCAGGACCTTTAGCGGCACTTTTCCACAAACGCCGCTAAAGACCAAGACC
TTTAGCGACGCTTTTACCAC
Found at i:7336238 original size:129 final size:129
Alignment explanation
Indices: 7336071--7336308 Score: 365
Period size: 129 Copynumber: 1.8 Consensus size: 129
7336061 ACAAAACGCT
* *
7336071 GCTAAAGACCAGGACCTTTAGCGGCGCTTTTCCTACAAACGCCGCTAAAGACC-AGGACCTTTAG
1 GCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCTACAAACGCCGCTAAAGACCTA-GACCTATAG
* * *
7336135 CGACGCTTTTCCCACAAACGCCGCTAAAGAC-CAGGACCTTTAGCGGCAATTTTCCCACAAGTGT
65 CAACACTTTTCCCACAAACGCCGCTAAAG-CTCAAGACCTTTAGCGGCAATTTTCCCACAAGTGT
7336199 C
129 C
7336200 GCTAAAGACCAAGACCTTTAGCGGCGCTTTTTCC-ACAAACGCCGCTAAAGACCTAGACCTATAG
1 GCTAAAGACCAAGACCTTTAGCGGCGC-TTTTCCTACAAACGCCGCTAAAGACCTAGACCTATAG
* *
7336264 CAACACTTTTTCCACAAACGCCGCTATAGCTCAAGACCTTTAGCG
65 CAACACTTTTCCCACAAACGCCGCTAAAGCTCAAGACCTTTAGCG
7336309 ACGCTTTGAT
Statistics
Matches: 99, Mismatches: 7, Indels: 6
0.88 0.06 0.05
Matches are distributed among these distances:
128 1 0.01
129 91 0.92
130 7 0.07
ACGTcount: A:0.29, C:0.32, G:0.18, T:0.21
Consensus pattern (129 bp):
GCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCTACAAACGCCGCTAAAGACCTAGACCTATAGC
AACACTTTTCCCACAAACGCCGCTAAAGCTCAAGACCTTTAGCGGCAATTTTCCCACAAGTGTC
Found at i:7336332 original size:129 final size:129
Alignment explanation
Indices: 7336064--7336334 Score: 332
Period size: 129 Copynumber: 2.1 Consensus size: 129
7336054 GCGCCGGACA
* *
7336064 AAACGCTGCTAAAGACCAGGACCTTTAGCGGCGCTTTTCCTACAAACGCCGCTAAAGACCAGGAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCTACAAACGCCGCTAAAGACCAGGAC
* * * * * **
7336129 CTTTAGCGACGCTTTTCCCACAAACGCCGCTAAAGACCAGGACCTTTAGCGGCAATTTTCCCAC
66 CTATAGCAACACTTTTCCCACAAACGCCGCTAAAGACCAAGACCTTTAGCGACAATTTGACCAC
** *
7336193 AAGTGTCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTTCC-ACAAACGCCGCTAAAGACCTA-G
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGC-TTTTCCTACAAACGCCGCTAAAGACC-AGG
* * ** **
7336256 ACCTATAGCAACACTTTTTCCACAAACGCCGCTATAG-CTCAAGACCTTTAGCGACGCTTTGATT
64 ACCTATAGCAACACTTTTCCCACAAACGCCGCTAAAGAC-CAAGACCTTTAGCGACAATTTGACC
7336320 AC
128 AC
7336322 AAACGCCGCTAAA
1 AAACGCCGCTAAA
7336335 AGTACTATTA
Statistics
Matches: 118, Mismatches: 21, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
128 1 0.01
129 110 0.93
130 7 0.06
ACGTcount: A:0.30, C:0.31, G:0.18, T:0.21
Consensus pattern (129 bp):
AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCTACAAACGCCGCTAAAGACCAGGAC
CTATAGCAACACTTTTCCCACAAACGCCGCTAAAGACCAAGACCTTTAGCGACAATTTGACCAC
Found at i:7336597 original size:15 final size:15
Alignment explanation
Indices: 7336577--7336608 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
7336567 AGGGATATGG
7336577 ATCATCTTCATCTTC
1 ATCATCTTCATCTTC
*
7336592 ATCATCTTCTTCTTC
1 ATCATCTTCATCTTC
7336607 AT
1 AT
7336609 TTTCAACTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.31, G:0.00, T:0.50
Consensus pattern (15 bp):
ATCATCTTCATCTTC
Found at i:7341144 original size:41 final size:39
Alignment explanation
Indices: 7341099--7341187 Score: 90
Period size: 40 Copynumber: 2.2 Consensus size: 39
7341089 CGTTTGGAAG
* *
7341099 AAAAACGCCACTATTGCTCT-CTTTTTTGTGGCGTTTTTAAC
1 AAAAACGCCACTATTGC-CTAC-CTTTTGCGGCGTTTTT-AC
* * * *
7341140 AAAAATGCCGCTATTTCCTACCTTTTGCGGCGTTTTTTC
1 AAAAACGCCACTATTGCCTACCTTTTGCGGCGTTTTTAC
7341179 AAAAACGCC
1 AAAAACGCC
7341188 GCTAACGCTC
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
39 9 0.22
40 16 0.40
41 15 0.38
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.37
Consensus pattern (39 bp):
AAAAACGCCACTATTGCCTACCTTTTGCGGCGTTTTTAC
Found at i:7341594 original size:8 final size:7
Alignment explanation
Indices: 7341576--7341684 Score: 53
Period size: 7 Copynumber: 15.3 Consensus size: 7
7341566 TAATGTTAAT
7341576 CTAAACC
1 CTAAACC
7341583 CTAAACCC
1 CTAAA-CC
*
7341591 CTAATCC
1 CTAAACC
*
7341598 CT-ATCTC
1 CTAAAC-C
7341605 CTAAACC
1 CTAAACC
* *
7341612 TTAAATC
1 CTAAACC
* *
7341619 ATAAAAC
1 CTAAACC
*
7341626 ATAAACC
1 CTAAACC
7341633 CTAAACCC
1 CTAAA-CC
*
7341641 CTAACCC
1 CTAAACC
*
7341648 CTAACCC
1 CTAAACC
7341655 CT-AACC
1 CTAAACC
7341661 TCT-AACTC
1 -CTAAAC-C
*
7341669 CTAACCC
1 CTAAACC
*
7341676 CTAACCC
1 CTAAACC
7341683 CT
1 CT
7341685 CTTTTACAAT
Statistics
Matches: 84, Mismatches: 11, Indels: 14
0.77 0.10 0.13
Matches are distributed among these distances:
6 6 0.07
7 61 0.73
8 17 0.20
ACGTcount: A:0.36, C:0.43, G:0.00, T:0.21
Consensus pattern (7 bp):
CTAAACC
Found at i:7341646 original size:14 final size:14
Alignment explanation
Indices: 7341631--7341684 Score: 81
Period size: 14 Copynumber: 3.8 Consensus size: 14
7341621 AAAACATAAA
7341631 CCCTAAACCCCTAAC
1 CCCT-AACCCCTAAC
7341646 CCCTAACCCCTAAC
1 CCCTAACCCCTAAC
* *
7341660 CTCTAACTCCTAAC
1 CCCTAACCCCTAAC
7341674 CCCTAACCCCT
1 CCCTAACCCCT
7341685 CTTTTACAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
14 31 0.89
15 4 0.11
ACGTcount: A:0.28, C:0.54, G:0.00, T:0.19
Consensus pattern (14 bp):
CCCTAACCCCTAAC
Found at i:7341653 original size:21 final size:21
Alignment explanation
Indices: 7341631--7341684 Score: 81
Period size: 21 Copynumber: 2.5 Consensus size: 21
7341621 AAAACATAAA
7341631 CCCTAAACCCCTAACCCCTAAC
1 CCCT-AACCCCTAACCCCTAAC
* *
7341653 CCCTAACCTCTAACTCCTAAC
1 CCCTAACCCCTAACCCCTAAC
7341674 CCCTAACCCCT
1 CCCTAACCCCT
7341685 CTTTTACAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
21 25 0.86
22 4 0.14
ACGTcount: A:0.28, C:0.54, G:0.00, T:0.19
Consensus pattern (21 bp):
CCCTAACCCCTAACCCCTAAC
Found at i:7341885 original size:7 final size:7
Alignment explanation
Indices: 7341873--7341920 Score: 55
Period size: 7 Copynumber: 7.0 Consensus size: 7
7341863 ATTACTTAAT
7341873 CTAAACC
1 CTAAACC
7341880 CTAAACC
1 CTAAACC
7341887 CT-AACC
1 CTAAACC
7341893 C-AAATCC
1 CTAAA-CC
*
7341900 CTAACCC
1 CTAAACC
*
7341907 CTAACCC
1 CTAAACC
7341914 CTAAACC
1 CTAAACC
7341921 TTATTTAATA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
6 7 0.19
7 27 0.75
8 2 0.06
ACGTcount: A:0.38, C:0.48, G:0.00, T:0.15
Consensus pattern (7 bp):
CTAAACC
Found at i:7341901 original size:13 final size:13
Alignment explanation
Indices: 7341876--7341917 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
7341866 ACTTAATCTA
7341876 AACCCTAAACCCT
1 AACCCTAAACCCT
7341889 AACCC-AAATCCCT
1 AACCCTAAA-CCCT
*
7341902 AACCCCTAACCCCT
1 AA-CCCTAAACCCT
7341916 AA
1 AA
7341918 ACCTTATTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
12 3 0.12
13 11 0.44
14 9 0.36
15 2 0.08
ACGTcount: A:0.38, C:0.48, G:0.00, T:0.14
Consensus pattern (13 bp):
AACCCTAAACCCT
Found at i:7341969 original size:81 final size:83
Alignment explanation
Indices: 7341815--7341973 Score: 250
Period size: 81 Copynumber: 1.9 Consensus size: 83
7341805 AACCCCTAAC
* * *
7341815 CCCTAACTACTAACCCCTAAACCTTATTTAATATATAAATTAAAAAACATTACTTAATCTAAACC
1 CCCTAACCACTAACCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAATTAATCTAAACC
7341880 CTAAACCCTAACCCAAAT
66 CTAAACCCTAACCCAAAT
* *
7341898 CCCTAACCCCTAACCCCTAAACCTTATTT-A-ATATAAATTAAAACACACTAATTAATCTAAACC
1 CCCTAACCACTAACCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAATTAATCTAAACC
*
7341961 TTAAACCCTAACC
66 CTAAACCCTAACC
7341974 TAACATCGAA
Statistics
Matches: 70, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
81 42 0.60
82 1 0.01
83 27 0.39
ACGTcount: A:0.43, C:0.30, G:0.00, T:0.27
Consensus pattern (83 bp):
CCCTAACCACTAACCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAATTAATCTAAACC
CTAAACCCTAACCCAAAT
Found at i:7342028 original size:7 final size:7
Alignment explanation
Indices: 7342016--7342047 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
7342006 CTCTTAATCT
7342016 CTAACCC
1 CTAACCC
*
7342023 CTAACCA
1 CTAACCC
7342030 CTAACCC
1 CTAACCC
7342037 CTAACCC
1 CTAACCC
7342044 CTAA
1 CTAA
7342048 ATCATAACCC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.34, C:0.50, G:0.00, T:0.16
Consensus pattern (7 bp):
CTAACCC
Found at i:7342520 original size:41 final size:42
Alignment explanation
Indices: 7342441--7342551 Score: 127
Period size: 41 Copynumber: 2.7 Consensus size: 42
7342431 AAATATTTTT
* * * *
7342441 GCGGCACTTTTTTAAAAACGCCACTAAA-AGCCTAAGCATTA
1 GCGGCGCTTTTTAAAAAACGCCGCTAAAGAGCCTAAGCATCA
* * *
7342482 GCGGCGCTTTTTCAAAAACGCCGCTAAAGA-TCTGAGCATCA
1 GCGGCGCTTTTTAAAAAACGCCGCTAAAGAGCCTAAGCATCA
* *
7342523 GCGACGTTTTTTAAAAAACGCCGCTAAAG
1 GCGGCGCTTTTTAAAAAACGCCGCTAAAG
7342552 CCCCGAAAGG
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
41 59 0.98
42 1 0.02
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.23
Consensus pattern (42 bp):
GCGGCGCTTTTTAAAAAACGCCGCTAAAGAGCCTAAGCATCA
Found at i:7396850 original size:35 final size:35
Alignment explanation
Indices: 7396790--7396875 Score: 90
Period size: 35 Copynumber: 2.5 Consensus size: 35
7396780 ATGTTGGAGA
*
7396790 TATTTTATATTAA-TTAATTAATTAAAT-ATTAGTT
1 TATTTTATTTTAATTTAATTAATTAAATGA-TAGTT
* *
7396824 TATTTGTATTTTAATTTAATT-TTTAAATGATATTT
1 TATTT-TATTTTAATTTAATTAATTAAATGATAGTT
7396859 TATTATTATTTT-ATTTA
1 TATT-TTATTTTAATTTA
7396876 GTATATATAT
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
34 10 0.22
35 27 0.60
36 8 0.18
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (35 bp):
TATTTTATTTTAATTTAATTAATTAAATGATAGTT
Found at i:7400353 original size:26 final size:26
Alignment explanation
Indices: 7400297--7400353 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
7400287 ATCCTCTCTT
*
7400297 AAGCCATATAACAGGAAGGTCACAAA
1 AAGCCATATAACAGGAAGCTCACAAA
* * *
7400323 GAGCCAT-TAATCGGGAAGCTCATAAA
1 AAGCCATATAA-CAGGAAGCTCACAAA
7400349 AAGCC
1 AAGCC
7400354 TATCAGAAAG
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.44, C:0.21, G:0.21, T:0.14
Consensus pattern (26 bp):
AAGCCATATAACAGGAAGCTCACAAA
Found at i:7400431 original size:26 final size:26
Alignment explanation
Indices: 7400402--7400466 Score: 62
Period size: 26 Copynumber: 2.5 Consensus size: 26
7400392 ATAAGAGCCA
* *
7400402 TAATTAGGAAGTTTACAAAGAACT-TT
1 TAATTAGGAAGCTCACAAAG-ACTCTT
* * *
7400428 TAATCAGAAAGCTCACAAAGAGTCTT
1 TAATTAGGAAGCTCACAAAGACTCTT
7400454 TAATTAGG-AGCTC
1 TAATTAGGAAGCTC
7400467 TAAATAGCCA
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
25 7 0.23
26 24 0.77
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (26 bp):
TAATTAGGAAGCTCACAAAGACTCTT
Found at i:7413282 original size:27 final size:28
Alignment explanation
Indices: 7413243--7413310 Score: 70
Period size: 27 Copynumber: 2.5 Consensus size: 28
7413233 TAATAAAATG
* *
7413243 TTAAATTCAATTTCTTT-TAATTTTAATA
1 TTAAATT-TATTTCTTTAAAATTTTAATA
* *
7413271 TTAAATTTATTT-TTTAAAATTTTATTT
1 TTAAATTTATTTCTTTAAAATTTTAATA
7413298 TTAAATTT-TTTCT
1 TTAAATTTATTTCT
7413311 AATTTAAAAC
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
26 6 0.18
27 21 0.62
28 7 0.21
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.63
Consensus pattern (28 bp):
TTAAATTTATTTCTTTAAAATTTTAATA
Found at i:7413287 original size:13 final size:13
Alignment explanation
Indices: 7413257--7413306 Score: 50
Period size: 13 Copynumber: 3.8 Consensus size: 13
7413247 ATTCAATTTC
*
7413257 TTTT-AATTTTAA
1 TTTTAAATTTTAT
*
7413269 TATTAAA-TTTATT
1 TTTTAAATTTTA-T
7413282 TTTTAAAATTTTAT
1 TTTT-AAATTTTAT
7413296 TTTTAAATTTT
1 TTTTAAATTTT
7413307 TTCTAATTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
12 7 0.23
13 12 0.39
14 8 0.26
15 4 0.13
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (13 bp):
TTTTAAATTTTAT
Found at i:7415224 original size:40 final size:41
Alignment explanation
Indices: 7415152--7415263 Score: 131
Period size: 40 Copynumber: 2.7 Consensus size: 41
7415142 ACCCTTTGGA
*
7415152 GCTTTAGCGACGTTTTTGGGAAAGCGCCGCTAATGCTC-GG
1 GCTTTAGCGACGTTTTTGAGAAAGCGCCGCTAATGCTCAGG
* * *
7415192 GTCTTTAGCGATG-TTTTGATAAAGCGCTGCTAATGCTCAAGG
1 G-CTTTAGCGACGTTTTTGAGAAAGCGCCGCTAATGCTC-AGG
*
7415234 GCTTTAGCGGCGTTTTTG-GAAAAGCGCCGC
1 GCTTTAGCGACGTTTTTGAG-AAAGCGCCGC
7415264 AAAAAATATT
Statistics
Matches: 59, Mismatches: 8, Indels: 8
0.79 0.11 0.11
Matches are distributed among these distances:
40 23 0.39
41 19 0.32
42 17 0.29
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (41 bp):
GCTTTAGCGACGTTTTTGAGAAAGCGCCGCTAATGCTCAGG
Found at i:7416530 original size:42 final size:42
Alignment explanation
Indices: 7416356--7416554 Score: 199
Period size: 43 Copynumber: 4.7 Consensus size: 42
7416346 GTTTATGTGA
* * *
7416356 AAAAACGCCGCTAAAGATCATGACCTTTAGC-AGTGCTTTTAT-
1 AAAAACGCCGCTAAAGAACATAACCTTTAGCGA-CGC-TTTATC
* * * *
7416398 AACAAATGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTTTC
1 AA-AAACGCCGCTAAAGAACATAACCTTTAGCGACGC-TTTATC
* * * *
7416442 ACAAACGCCGCTAAAGATCATGAGCTTTAGCGACGCTTTAGTC
1 AAAAACGCCGCTAAAGAACATAACCTTTAGCGACGCTTTA-TC
* *
7416485 AAAAACGCCGCTAAAGAATA-AACCTTTAGCGACGCTTCTAAC
1 AAAAACGCCGCTAAAGAACATAACCTTTAGCGACGCTT-TATC
7416527 AAAAACGCCGCTAAA-AACATAACCTTTA
1 AAAAACGCCGCTAAAGAACATAACCTTTA
7416555 AAAATATTAT
Statistics
Matches: 133, Mismatches: 18, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
41 3 0.02
42 44 0.33
43 85 0.64
44 1 0.01
ACGTcount: A:0.36, C:0.25, G:0.16, T:0.24
Consensus pattern (42 bp):
AAAAACGCCGCTAAAGAACATAACCTTTAGCGACGCTTTATC
Found at i:7419742 original size:19 final size:19
Alignment explanation
Indices: 7419716--7419762 Score: 85
Period size: 19 Copynumber: 2.5 Consensus size: 19
7419706 CTGAAACCAA
7419716 AATTTATAATAGGCATTCT
1 AATTTATAATAGGCATTCT
*
7419735 AGTTTATAATAGGCATTCT
1 AATTTATAATAGGCATTCT
7419754 AATTTATAA
1 AATTTATAA
7419763 CAGATTCCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.38, C:0.09, G:0.11, T:0.43
Consensus pattern (19 bp):
AATTTATAATAGGCATTCT
Found at i:7422031 original size:89 final size:89
Alignment explanation
Indices: 7421937--7422102 Score: 244
Period size: 89 Copynumber: 1.9 Consensus size: 89
7421927 AACCCTGAAC
* * *
7421937 CCCTAACCACTA-ACCCCTAAACCTTATTTAATGTATAAATTAAAAAACACTAATTAATCTAAAT
1 CCCTAACCACTAGA-CCCTAAACATTATTTAATATATAAATTAAAAAACACTAATTAATCTAAAC
7422001 CCTAAACCCTAACCCAACCCCAAAT
65 CCTAAACCCTAACCCAACCCCAAAT
* * * * *
7422026 CCCTAACCCCTAGACCCTAAATATTATTTAGTATATAAATTAAAACACACTAATTAATTTAAACC
1 CCCTAACCACTAGACCCTAAACATTATTTAATATATAAATTAAAAAACACTAATTAATCTAAACC
7422091 CTAAACCCTAAC
66 CTAAACCCTAAC
7422103 TTGACACCAA
Statistics
Matches: 68, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
89 67 0.99
90 1 0.01
ACGTcount: A:0.43, C:0.28, G:0.02, T:0.27
Consensus pattern (89 bp):
CCCTAACCACTAGACCCTAAACATTATTTAATATATAAATTAAAAAACACTAATTAATCTAAACC
CTAAACCCTAACCCAACCCCAAAT
Found at i:7422126 original size:89 final size:90
Alignment explanation
Indices: 7421951--7422135 Score: 219
Period size: 89 Copynumber: 2.1 Consensus size: 90
7421941 AACCACTAAC
* * *
7421951 CCCTAAACCTTATTTAATGTATAAATTAAAAAACACTAATTAATCTAAATCCTAAACCCTAACCC
1 CCCTAAACATTATTTAATATATAAATTAAAAAACACTAATTAATCTAAACCCTAAACCCTAACCC
* * ** * *
7422016 AACCCCAAATCCCTAACCCCTAGA-
66 AACACCAAAACAATAAACCCTAAAT
* * * * **
7422040 CCCTAAATATTATTTAGTATATAAATTAAAACACACTAATTAATTTAAACCCTAAACCCTAACTT
1 CCCTAAACATTATTTAATATATAAATTAAAAAACACTAATTAATCTAAACCCTAAACCCTAACCC
*
7422105 GACACCAAAACAATAAACCCTAAAT
66 AACACCAAAACAATAAACCCTAAAT
7422130 CCCTAA
1 CCCTAA
7422136 CTCTTAACCT
Statistics
Matches: 79, Mismatches: 16, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
89 73 0.92
90 6 0.08
ACGTcount: A:0.45, C:0.27, G:0.02, T:0.26
Consensus pattern (90 bp):
CCCTAAACATTATTTAATATATAAATTAAAAAACACTAATTAATCTAAACCCTAAACCCTAACCC
AACACCAAAACAATAAACCCTAAAT
Found at i:7422171 original size:14 final size:14
Alignment explanation
Indices: 7422120--7422171 Score: 50
Period size: 14 Copynumber: 3.7 Consensus size: 14
7422110 CAAAACAATA
* *
7422120 AACCCTAAATCCCT
1 AACCCTTAACCCCT
* *
7422134 AACTCTTAACCTCT
1 AACCCTTAACCCCT
*
7422148 AACCTTTAACCCCT
1 AACCCTTAACCCCT
*
7422162 AACCCCTAAC
1 AACCCTTAAC
7422172 TCATGAACAT
Statistics
Matches: 29, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.33, C:0.42, G:0.00, T:0.25
Consensus pattern (14 bp):
AACCCTTAACCCCT
Found at i:7422221 original size:14 final size:15
Alignment explanation
Indices: 7422204--7422236 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
7422194 CTTAAATCAG
7422204 AATCCCTAA-TCCAT
1 AATCCCTAATTCCAT
7422218 AATCCCTAATTCCAT
1 AATCCCTAATTCCAT
7422233 AATC
1 AATC
7422237 TATAATCCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.36, C:0.33, G:0.00, T:0.30
Consensus pattern (15 bp):
AATCCCTAATTCCAT
Found at i:7422301 original size:29 final size:29
Alignment explanation
Indices: 7422268--7422325 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
7422258 TCTTAAACCG
7422268 GCCCTAAATCCTAAATTAACCATATATAT
1 GCCCTAAATCCTAAATTAACCATATATAT
7422297 GCCCTAAATCCTAAATTAACCATATATAT
1 GCCCTAAATCCTAAATTAACCATATATAT
7422326 ACTCTAAACC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.41, C:0.24, G:0.03, T:0.31
Consensus pattern (29 bp):
GCCCTAAATCCTAAATTAACCATATATAT
Found at i:7422332 original size:29 final size:29
Alignment explanation
Indices: 7422269--7422333 Score: 112
Period size: 29 Copynumber: 2.2 Consensus size: 29
7422259 CTTAAACCGG
*
7422269 CCCTAAATCCTAAATTAACCATATATATG
1 CCCTAAATCCTAAATTAACCATATATATA
7422298 CCCTAAATCCTAAATTAACCATATATATA
1 CCCTAAATCCTAAATTAACCATATATATA
*
7422327 CTCTAAA
1 CCCTAAA
7422334 CCATATATAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.43, C:0.25, G:0.02, T:0.31
Consensus pattern (29 bp):
CCCTAAATCCTAAATTAACCATATATATA
Found at i:7422739 original size:40 final size:40
Alignment explanation
Indices: 7422673--7422826 Score: 143
Period size: 41 Copynumber: 3.8 Consensus size: 40
7422663 AAATGTTTTT
**
7422673 GCGGCGCTTTT-CAAAAAGCGTTGCTAAAGCCCGAGCATTA
1 GCGGCGCTTTTCCAAAAA-CGCCGCTAAAGCCCGAGCATTA
** *
7422713 GCGGCG-TTTTCCAAGAAACGCCGCTAAAAATCTGAGCATTA
1 GCGGCGCTTTTCCAA-AAACGCCGCT-AAAGCCCGAGCATTA
* * *
7422754 GCGACGCTTTTCCAAAAACGCCGCTAAAGATCTGAGCATTA
1 GCGGCGCTTTTCCAAAAACGCCGCTAAAG-CCCGAGCATTA
* * *
7422795 G-TGCGCTTTTCTTAAAATCGCCGCTAAAGCCC
1 GCGGCGCTTTTC-CAAAAACGCCGCTAAAGCCC
7422827 CGAAAGGTAG
Statistics
Matches: 95, Mismatches: 13, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
39 4 0.04
40 26 0.27
41 57 0.60
42 8 0.08
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (40 bp):
GCGGCGCTTTTCCAAAAACGCCGCTAAAGCCCGAGCATTA
Found at i:7422823 original size:41 final size:41
Alignment explanation
Indices: 7422705--7422823 Score: 161
Period size: 41 Copynumber: 2.9 Consensus size: 41
7422695 GCTAAAGCCC
* *
7422705 GAGCATTAGCGGCG-TTTTCCAAGAAACGCCGCTAAAAATCT
1 GAGCATTAGCGACGCTTTTCCAA-AAACGCCGCTAAAGATCT
7422746 GAGCATTAGCGACGCTTTTCCAAAAACGCCGCTAAAGATCT
1 GAGCATTAGCGACGCTTTTCCAAAAACGCCGCTAAAGATCT
* * *
7422787 GAGCATTAGTG-CGCTTTTCTTAAAATCGCCGCTAAAG
1 GAGCATTAGCGACGCTTTTC-CAAAAACGCCGCTAAAG
7422824 CCCCGAAAGG
Statistics
Matches: 71, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
40 8 0.11
41 55 0.77
42 8 0.11
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.24
Consensus pattern (41 bp):
GAGCATTAGCGACGCTTTTCCAAAAACGCCGCTAAAGATCT
Found at i:7428589 original size:17 final size:19
Alignment explanation
Indices: 7428567--7428602 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
7428557 GTTTTTGGTG
7428567 TTTT-GGGGG-TGATTTTT
1 TTTTGGGGGGATGATTTTT
7428584 TTTTGGGGGGATGATTTTT
1 TTTTGGGGGGATGATTTTT
7428603 CATCTGTGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.24
18 5 0.29
19 8 0.47
ACGTcount: A:0.08, C:0.00, G:0.36, T:0.56
Consensus pattern (19 bp):
TTTTGGGGGGATGATTTTT
Found at i:7432308 original size:44 final size:43
Alignment explanation
Indices: 7432258--7432437 Score: 159
Period size: 43 Copynumber: 4.2 Consensus size: 43
7432248 ATGTCGCTAA
* * *
7432258 CTTTAGCGGCATTTTTAGAATTAAACACCGCTAAAGAACAAGAC
1 CTTTAGCGGCGTTTTTACAA-CAAACACCGCTAAAGAACAAGAC
* * * *
7432302 CTTTAGCGGCGTTTTTTCCACAAACGCCGCTAAAGACCAAGAC
1 CTTTAGCGGCGTTTTTACAACAAACACCGCTAAAGAACAAGAC
* * * *
7432345 CTTTAGCGGCGTTTTTTCCACAAACGCCGCTAAAG-ACTATGAC
1 CTTTAGCGGCGTTTTTACAACAAACACCGCTAAAGAAC-AAGAC
* * * * **
7432388 CTTTAGCGACG-CTTTCCCACAAACGTCGCTAAAG-ACAATGAC
1 CTTTAGCGGCGTTTTTACAACAAACACCGCTAAAGAACAA-GAC
7432430 CTTTAGCG
1 CTTTAGCG
7432438 ACACTTTTCT
Statistics
Matches: 120, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
41 1 0.01
42 34 0.28
43 69 0.57
44 16 0.13
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (43 bp):
CTTTAGCGGCGTTTTTACAACAAACACCGCTAAAGAACAAGAC
Found at i:7432343 original size:43 final size:43
Alignment explanation
Indices: 7432280--7432489 Score: 237
Period size: 43 Copynumber: 4.9 Consensus size: 43
7432270 TTTTAGAATT
* *
7432280 AAACACCGCTAAAGAACAAGACCTTTAGCGGCGTTTTTTCCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGTTTTTTCCAC
7432323 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGTTTTTTCCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGTTTTTTCCAC
* * * * *
7432366 AAACGCCGCTAAAGACTATGACCTTTAGCGACG-CTTTCCCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGTTTTTTCCAC
* * **
7432408 AAACGTCGCTAAAGA-CAATGACCTTTAGCGAC-ACTTTTCTCAC
1 AAACGCCGCTAAAGACCAA-GACCTTTAGCGGCGTTTTTTC-CAC
* ** * *
7432451 AAACGCTGCTAAAGACCGTGATCTTTAGCGGCGCTTTTT
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGTTTTTT
7432490 ATCATAAACA
Statistics
Matches: 143, Mismatches: 19, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
41 1 0.01
42 39 0.27
43 98 0.69
44 5 0.03
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.25
Consensus pattern (43 bp):
AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGTTTTTTCCAC
Found at i:7432431 original size:85 final size:84
Alignment explanation
Indices: 7432280--7432487 Score: 240
Period size: 85 Copynumber: 2.4 Consensus size: 84
7432270 TTTTAGAATT
* * * *
7432280 AAACACCGCTAAAGAACAAGACCTTTAGCGGCGTTTTTTCCACAAACGCCGCTAAAGACCAAGAC
1 AAACGCCGCTAAAG-ACATGACCTTTAGCGGCG-CTTTCCCACAAACGCCGCTAAAGACCAAGAC
* * *
7432345 CTTTAGCGGC-GTTTTTTCCAC
64 CTTTAGCGACACTTTTCT-CAC
* *
7432366 AAACGCCGCTAAAGACTATGACCTTTAGCGACGCTTTCCCACAAACGTCGCTAAAGA-CAATGAC
1 AAACGCCGCTAAAGAC-ATGACCTTTAGCGGCGCTTTCCCACAAACGCCGCTAAAGACCAA-GAC
7432430 CTTTAGCGACACTTTTCTCAC
64 CTTTAGCGACACTTTTCTCAC
* * *
7432451 AAACGCTGCTAAAGACCGTGATCTTTAGCGGCGCTTT
1 AAACGCCGCTAAAGA-CATGACCTTTAGCGGCGCTTT
7432488 TTATCATAAA
Statistics
Matches: 105, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
84 3 0.03
85 69 0.66
86 33 0.31
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (84 bp):
AAACGCCGCTAAAGACATGACCTTTAGCGGCGCTTTCCCACAAACGCCGCTAAAGACCAAGACCT
TTAGCGACACTTTTCTCAC
Found at i:7432520 original size:128 final size:128
Alignment explanation
Indices: 7432286--7432529 Score: 291
Period size: 128 Copynumber: 1.9 Consensus size: 128
7432276 AATTAAACAC
* * *
7432286 CGCTAAAGAACAAGACCTTTAGCGGCGTTTTTTCCACAAACGCCGCTAAAGACCAAGACCTTTAG
1 CGCTAAAGAACAAGACCTTTAGCGACCTTTTCTCCACAAACGCCGCTAAAGACCAAGACCTTTAG
* *
7432351 CGGCGTTTTTTCCACAAACGCCGCTAAAGACTATGACCTTTAGCGACGCTTTCCCACAAACGT
66 CGGCGTTTTTTCCACAAACACCGCTAAAGACTATAACCTTTAGCGACGCTTTCCCACAAACGT
* ** *
7432414 CGCTAAAG-ACAATGACCTTTAGCGACACTTTTCT-CACAAACGCTGCTAAAGACCGTGATCTTT
1 CGCTAAAGAACAA-GACCTTTAGCGAC-CTTTTCTCCACAAACGCCGCTAAAGACCAAGACCTTT
* * * *
7432477 AGCGGCGCTTTTTAT-CATAAACACCGTTATAGA-TCA-AATCTTTAGCGACGCTT
64 AGCGGCG-TTTTT-TCCACAAACACCGCTAAAGACT-ATAACCTTTAGCGACGCTT
7432530 CTCGCAAAAA
Statistics
Matches: 98, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
127 4 0.04
128 68 0.69
129 25 0.26
130 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.26
Consensus pattern (128 bp):
CGCTAAAGAACAAGACCTTTAGCGACCTTTTCTCCACAAACGCCGCTAAAGACCAAGACCTTTAG
CGGCGTTTTTTCCACAAACACCGCTAAAGACTATAACCTTTAGCGACGCTTTCCCACAAACGT
Found at i:7434790 original size:115 final size:115
Alignment explanation
Indices: 7434638--7434878 Score: 448
Period size: 115 Copynumber: 2.1 Consensus size: 115
7434628 GAAGCGACTG
*
7434638 AATCCAGCTCCCCCTGGAAAATAAAAAAGACGAAAAAAAAAACAGCATATGCATACAACACTCAT
1 AATCCAGGTCCCCCTGGAAAATAAAAAAGACGAAAAAAAAAACAGCATATGCATACAACACTCAT
7434703 AGTAACAATTAAAGTAGAAGAAATTAGTGGAAAGGGAAAGATATACCATA
66 AGTAACAATTAAAGTAGAAGAAATTAGTGGAAAGGGAAAGATATACCATA
*
7434753 AATCCAGGTCCCTCTGGAAAATAAAGAAAGACG-AAAAAAAAACAGCATATGCATACAACACTCA
1 AATCCAGGTCCCCCTGGAAAATAAA-AAAGACGAAAAAAAAAACAGCATATGCATACAACACTCA
7434817 TAGTAACAATTAAAGTAGAAGAAATTAGTGGAAAGGGAAAGATATACCATA
65 TAGTAACAATTAAAGTAGAAGAAATTAGTGGAAAGGGAAAGATATACCATA
7434868 AATCCAGGTCC
1 AATCCAGGTCC
7434879 TTTAAAAAAT
Statistics
Matches: 123, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
115 116 0.94
116 7 0.06
ACGTcount: A:0.50, C:0.17, G:0.17, T:0.17
Consensus pattern (115 bp):
AATCCAGGTCCCCCTGGAAAATAAAAAAGACGAAAAAAAAAACAGCATATGCATACAACACTCAT
AGTAACAATTAAAGTAGAAGAAATTAGTGGAAAGGGAAAGATATACCATA
Found at i:7437407 original size:147 final size:149
Alignment explanation
Indices: 7437123--7437617 Score: 759
Period size: 147 Copynumber: 3.3 Consensus size: 149
7437113 ATGGCACAAT
* * *
7437123 TTTTTTAAACTAAAATTATTTTTTTGTGGCGTTTTTTTATAAAAACGCCGCTATTGCTTACATTT
1 TTTTTTAAAATAAAATTA-TTTTTTGTGGCGTTTTTTTATAAAAACGCCGCTATTGCTCACCTTT
* ** * * ** *
7437188 TGCGGCGTTTT-TATGTAAAACGCCGTAAAAAATTATTTTATTTGGAATAAAACGATACTGTTTT
65 TGCGGCGTTTTACATAAAAAATGCCGCAAAAAA-TATTACATTTGGAATAAAACGACACTGTTTT
*
7437252 TCTATGCTAAAAATCTCGCTA
129 ACTATGCTAAAAATCTCGCTA
7437273 TTTTTTAAAATAAAATTATTTTTTGTGGCG-TTTTTTATAAAAACGCCGCTATTGCTCACCTTTT
1 TTTTTTAAAATAAAATTATTTTTTGTGGCGTTTTTTTATAAAAACGCCGCTATTGCTCACCTTTT
* *
7437337 GCGGCGTTTTACAT-AAAAATGCCACAAAAAATATTACATTTGGAATAAAACGACACTGTTTTGC
66 GCGGCGTTTTACATAAAAAATGCCGCAAAAAATATTACATTTGGAATAAAACGACACTGTTTTAC
*
7437401 TATGCTAAAAATCTCACTA
131 TATGCTAAAAATCTCGCTA
*
7437420 TTTTTTAAAATAAAATTA-TTTGTGTGGCG-TTTTTTATAAAAACGCCGCTATTGCTCACCTTTT
1 TTTTTTAAAATAAAATTATTTTTTGTGGCGTTTTTTTATAAAAACGCCGCTATTGCTCACCTTTT
7437483 GCGGCGTTTTACATAAAAAATGCCGCAAAAAATATTACATTTGGAATAAAACGACACTGTTTTAC
66 GCGGCGTTTTACATAAAAAATGCCGCAAAAAATATTACATTTGGAATAAAACGACACTGTTTTAC
7437548 TATGCTAAAAATCTCGCTA
131 TATGCTAAAAATCTCGCTA
*
7437567 TTTTTTAAAGA-AAATTTATTTTTTGTGGCGTTTTTTTTATAAAAACGCCGC
1 TTTTTTAAA-ATAAAATTATTTTTTGTGGCG-TTTTTTTATAAAAACGCCGC
7437618 AAAAAATTAT
Statistics
Matches: 320, Mismatches: 19, Indels: 12
0.91 0.05 0.03
Matches are distributed among these distances:
146 58 0.18
147 146 0.46
148 66 0.21
149 14 0.04
150 36 0.11
ACGTcount: A:0.32, C:0.15, G:0.13, T:0.40
Consensus pattern (149 bp):
TTTTTTAAAATAAAATTATTTTTTGTGGCGTTTTTTTATAAAAACGCCGCTATTGCTCACCTTTT
GCGGCGTTTTACATAAAAAATGCCGCAAAAAATATTACATTTGGAATAAAACGACACTGTTTTAC
TATGCTAAAAATCTCGCTA
Found at i:7438427 original size:13 final size:13
Alignment explanation
Indices: 7438409--7438438 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
7438399 CTAGTTAATC
7438409 TAAACTTAAACCA
1 TAAACTTAAACCA
*
7438422 TAAACTTAAACCC
1 TAAACTTAAACCA
7438435 TAAA
1 TAAA
7438439 ACCCTAAACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.53, C:0.23, G:0.00, T:0.23
Consensus pattern (13 bp):
TAAACTTAAACCA
Found at i:7438482 original size:21 final size:21
Alignment explanation
Indices: 7438409--7438537 Score: 84
Period size: 21 Copynumber: 6.0 Consensus size: 21
7438399 CTAGTTAATC
*
7438409 TAAA-CTTAAACCATAAAC-T
1 TAAACCTTAAACCATAACCTT
* * * *
7438428 TAAACCCTAAAACCCTAAACTCA
1 TAAA-CCTTAAACCATAACCT-T
7438451 TAAACCCTTAATA-CATAACCTT
1 TAAA-CCTTAA-ACCATAACCTT
** *
7438473 TAAACCTTAAACCCCAGCCTT
1 TAAACCTTAAACCATAACCTT
* *
7438494 TAAACCATAAACCATAACCTC
1 TAAACCTTAAACCATAACCTT
*
7438515 TAAACCTATAATCCATAAACCTT
1 TAAACCT-TAAACCAT-AACCTT
7438538 AAAATGGTAA
Statistics
Matches: 84, Mismatches: 18, Indels: 12
0.74 0.16 0.11
Matches are distributed among these distances:
19 4 0.05
20 1 0.01
21 46 0.55
22 11 0.13
23 21 0.25
24 1 0.01
ACGTcount: A:0.44, C:0.30, G:0.01, T:0.25
Consensus pattern (21 bp):
TAAACCTTAAACCATAACCTT
Found at i:7439071 original size:113 final size:114
Alignment explanation
Indices: 7438776--7439370 Score: 901
Period size: 113 Copynumber: 5.2 Consensus size: 114
7438766 TTGAGCATTA
*
7438776 GCGGCGCTTTCCCAAAAACGCCGCTAAAGACCTGAGCATTAGTGGCGCTTTCTTAAAAACGCCGC
1 GCGGCGCTTTCCCAAAAACGCCGCTAAAGACCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGC
* * *
7438841 AAAATCCCCGAAAGCTCACAAAACGGTGTCGTTGGGCTTAGGTTTTTTTT
66 TAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGG-TTTTTTT
* * * *
7438891 GCGGCGCTTTCCCAACAATGCCGCTAAAGCCCTGAGCATTAGCGGTGCTTTCTTAAAAACGCCGC
1 GCGGCGCTTTCCCAAAAACGCCGCTAAAGACCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGC
*
7438956 TAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTTGGCTTAGG-TTTTTT
66 TAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTT
*
7439004 GCGGCGCTTTCCCAAAAACGCCGCTAAAGACCTGAGCATTAGCGGCGCTTTCTTAAAAACGCTGC
1 GCGGCGCTTTCCCAAAAACGCCGCTAAAGACCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGC
*
7439069 TAAATCCCTGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTT
66 TAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTT
* * *
7439118 GCGGCGC-TTCACCAAAAACGCCGCTAAAGACCCGAGCATTCGCGGCGCTTTCTTAAAAATGCCG
1 GCGGCGCTTTC-CCAAAAACGCCGCTAAAGACCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCG
* * *
7439182 CTAAAT-CCCGAAAGTTCAGAAAACGGTGTCGTTTGGCTTAGGTTTTTTT
65 CTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTT
** * *
7439231 GAAGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGC
1 GCGGCGCTTTCCCAAAAACGCCGCTAAAGACCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGC
* *
7439296 TAAATCCCTGAAAGCTCAAAAAACGGCGTCGTTGGGCTTAGG-TTTTTT
66 TAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTT
* ***
7439344 GCGGTGCTTTCTGGAAAACGCCGCTAA
1 GCGGCGCTTTCCCAAAAACGCCGCTAA
7439371 TGCCTATTTT
Statistics
Matches: 435, Mismatches: 41, Indels: 10
0.90 0.08 0.02
Matches are distributed among these distances:
113 235 0.54
114 102 0.23
115 98 0.23
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (114 bp):
GCGGCGCTTTCCCAAAAACGCCGCTAAAGACCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGC
TAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTT
Found at i:7439273 original size:227 final size:226
Alignment explanation
Indices: 7438779--7439370 Score: 911
Period size: 227 Copynumber: 2.6 Consensus size: 226
7438769 AGCATTAGCG
* *
7438779 GCGCTTTCCCAAAAACGCCGCTAAAGACCTGAGCATTAGTGGCGCTTTCTTAAAAACGCCGCAAA
1 GCGCTTTCCCAAAAACGCCGCTAAAGACCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAA
* * * *
7438844 ATCCCCGAAAGCTCACAAAACGGTGTCGTTGGGCTTAGGTTTTTTTTGCGGCGCTTTCCCAACAA
66 ATCCCTGAAAGCTCAAAAAACGGCGTCGTTGGGCTTAGG-TTTTTTTGCGGCGC-TTCCCAAAAA
* *
7438909 TGCCGCTAAAGCCCTGAGCATTAGCGGTGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCA
129 CGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCA
**
7438974 GAAAACGGCGTCGTTTGGCTTAGGTTTTTTGCG
194 GAAAACGGCGTCGTTTGGCTTAGGTTTTTTGAA
*
7439007 GCGCTTTCCCAAAAACGCCGCTAAAGACCTGAGCATTAGCGGCGCTTTCTTAAAAACGCTGCTAA
1 GCGCTTTCCCAAAAACGCCGCTAAAGACCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAA
*
7439072 ATCCCTGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTCACCAAAAAC
66 ATCCCTGAAAGCTCAAAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTC-CCAAAAAC
* * *
7439137 GCCGCTAAAGACCC-GAGCATTCGCGGCGCTTTCTTAAAAATGCCGCTAAAT-CCCGAAAGTTCA
130 GCCGCTAAAG-CCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCA
*
7439200 GAAAACGGTGTCGTTTGGCTTAGGTTTTTTTGAA
194 GAAAACGGCGTCGTTTGGCTTAGG-TTTTTTGAA
* *
7439234 GCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAA
1 GCGCTTTCCCAAAAACGCCGCTAAAGACCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAA
* ***
7439299 ATCCCTGAAAGCTCAAAAAACGGCGTCGTTGGGCTTAGG-TTTTTTGCGGTGCTTTCTGGAAAAC
66 ATCCCTGAAAGCTCAAAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGC-TTCCCAAAAAC
7439363 GCCGCTAA
130 GCCGCTAA
7439371 TGCCTATTTT
Statistics
Matches: 337, Mismatches: 23, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
226 62 0.18
227 174 0.52
228 101 0.30
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (226 bp):
GCGCTTTCCCAAAAACGCCGCTAAAGACCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAA
ATCCCTGAAAGCTCAAAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTCCCAAAAACG
CCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAGA
AAACGGCGTCGTTTGGCTTAGGTTTTTTGAA
Found at i:7452218 original size:34 final size:30
Alignment explanation
Indices: 7452159--7452220 Score: 88
Period size: 34 Copynumber: 1.9 Consensus size: 30
7452149 ACTAAAAAGA
7452159 AAAAAAATATTTAAAAATTTAAAAAATCTC
1 AAAAAAATATTTAAAAATTTAAAAAATCTC
7452189 AAAAAAATATTTTAATAATTATTTAAAAAATC
1 AAAAAAATA-TTTAA-AA--ATTTAAAAAATC
7452221 ACATCTAAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
30 9 0.32
31 5 0.18
32 2 0.07
34 12 0.43
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (30 bp):
AAAAAAATATTTAAAAATTTAAAAAATCTC
Found at i:7456519 original size:44 final size:44
Alignment explanation
Indices: 7456448--7457290 Score: 658
Period size: 44 Copynumber: 19.3 Consensus size: 44
7456438 AGACTTGATG
* * * *
7456448 CGATCTGCTCCACTACTACTTAGGGAGATAAGATCTACAATCTT
1 CGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTGCCATCTT
* * ****
7456492 CGACCTGCTCCACTACTGCTTAAGGAGATAGGA-CTGGTGGCTT
1 CGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTGCCATCTT
** * * *
7456535 AAATCTGCTTCACTACTGCTTAGGAAAAT-GAGAT-TCGCCATCTT
1 CGATCTGCTCCACTACTGCTTAGGGAGATAG-GATCT-GCCATCTT
*
7456579 CGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTT
1 CGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTGCCATCTT
* ****
7456623 -GACCTGCTCCACTACTGCTTAGGGAGATAGGA-CTGGTGGCTT
1 CGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTGCCATCTT
** * * * *
7456665 AAATCTGCTTCACTACTGCTTAGGAAGATAAGAT-TCGCCGTCTT
1 CGATCTGCTCCACTACTGCTTAGGGAGATAGGATCT-GCCATCTT
****
7456709 CGATCTGCTCCACTACTGCTTAGGGAGATAGGA-CTGGTGGCTT
1 CGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTGCCATCTT
** * * *
7456752 AAATCTGGTTCACTACTGCTTAGGAAGAT-GAGAT-TCGCCATCTT
1 CGATCTGCTCCACTACTGCTTAGGGAGATAG-GATCT-GCCATCTT
*
7456796 CGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTT
1 CGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTGCCATCTT
* * ****
7456840 TGACCTGCTCCACTACTGCTTAGGGAGATAGGA-CTGGTGGCTT
1 CGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTGCCATCTT
** * * ** * * *
7456883 AAATTTGCTTCACTACTGCTTAGAAAGATAAGAT-TCGCCGTATT
1 CGATCTGCTCCACTACTGCTTAGGGAGATAGGATCT-GCCATCTT
* * *
7456927 CGATCTGCTCCACTACTTCTTAGGGGGATAGGATCTACCATCTT
1 CGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTGCCATCTT
* * ***
7456971 TGACCTGCTCCACTACTGCTTAGGGAGATAGGA-CTGGTGGT-TT
1 CGATCTGCTCCACTACTGCTTAGGGAGATAGGATCT-GCCATCTT
** * * * * * *
7457014 AAATCTGCTTCACTACTGTTTAGGAAGATAAGAT-TCACCGTCTT
1 CGATCTGCTCCACTACTGCTTAGGGAGATAGGATCT-GCCATCTT
* *
7457058 CGATCTGCTCCACTACTGCTTAGGGAGATAGGACCTACCATCTT
1 CGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTGCCATCTT
* * ****
7457102 TGACCTGCTCCACTACTGCTTAGGGAGATAGGA-CTGGTGGCTT
1 CGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTGCCATCTT
** * * * *
7457145 AAATCTGTTTCATTACTGCTTAGGAAGAT-GAGAT-TCGCCATCTT
1 CGATCTGCTCCACTACTGCTTAGGGAGATAG-GATCT-GCCATCTT
* *
7457189 CGATCTGCTCCACTACTACTTAGGGAGATAGGATCTACCATCTT
1 CGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTGCCATCTT
* ** * *
7457233 TGGCCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCATCTT
1 CGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTGCCATCTT
* *
7457277 CGACCTGTTCCACT
1 CGATCTGCTCCACT
7457291 GTAACCTCAG
Statistics
Matches: 618, Mismatches: 155, Indels: 52
0.75 0.19 0.06
Matches are distributed among these distances:
42 8 0.01
43 215 0.35
44 387 0.63
45 8 0.01
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (44 bp):
CGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTGCCATCTT
Found at i:7456542 original size:127 final size:128
Alignment explanation
Indices: 7456318--7456738 Score: 490
Period size: 130 Copynumber: 3.3 Consensus size: 128
7456308 ATAAGACTGG
** * * * * * * *
7456318 ATGCGATCTGCTTTACTATTGCTTAGAGAGATAAGATTTACAATCTTCAACTTACTCCACTGCTG
1 ATGCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCGACCTGCTCCACTACTG
* * *** *** * *
7456383 CTCAGGGAGATAGGATTGGTTTTTTTTGTCTGC-TCTGCTACTGCTTAGGGAGATAAGACTT-G-
66 CTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTTC-ACTACTGCTTAGGAAGATAAGA-TTCGC
*
7456445 ATGCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTACAATCTTCGACCTGCTCCACTACTG
1 ATGCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCGACCTGCTCCACTACTG
* * *
7456510 CTTAAGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAAATGAGATTCGCC
66 CTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATAAGATTCG-C
* * *
7456574 ATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTT-GACCTGCTCCACTAC
1 A--TGCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCGACCTGCTCCACTAC
7456638 TGCTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATAAGATTCGC
64 TGCTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATAAGATTCG-
7456703 C
128 C
* *
7456704 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATA
1 --ATGCGATCTGCTCCACTACTGCTTAGGGAGATA
7456739 GGACTGGTGG
Statistics
Matches: 255, Mismatches: 31, Indels: 13
0.85 0.10 0.04
Matches are distributed among these distances:
126 2 0.01
127 98 0.38
128 2 0.01
129 1 0.00
130 110 0.43
131 42 0.16
ACGTcount: A:0.24, C:0.23, G:0.22, T:0.31
Consensus pattern (128 bp):
ATGCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCGACCTGCTCCACTACTG
CTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATAAGATTCGC
Found at i:7456587 original size:87 final size:87
Alignment explanation
Indices: 7456449--7457290 Score: 626
Period size: 87 Copynumber: 9.7 Consensus size: 87
7456439 GACTTGATGC
* * * * *
7456449 GATCTGCTCCACTACTACTTAGGGAGATAAGA-TCTACAATCTTCGACCTGCTCCACTACTGCTT
1 GATCTGCTCCACTACTGCTTAGGGAGATAGGACTC-GCCATCTTCGATCTGCTCCACTACTGCTT
* ** *
7456513 AAGGAGATAGGACTGGTGGCTTA
65 AGGGAGATAGGACTGCCGTCTTA
* * * * *
7456536 AATCTGCTTCACTACTGCTTAGGAAAAT-GAGATTCGCCATCTTCGATCTGCTCCACTACTGCTT
1 GATCTGCTCCACTACTGCTTAGGGAGATAG-GACTCGCCATCTTCGATCTGCTCCACTACTGCTT
* *
7456600 AGGGAGATAGGATCTACCATCTT-
65 AGGGAGATAGGA-CTGCCGTCTTA
* **** ** *
7456623 GACCTGCTCCACTACTGCTTAGGGAGATAGGACT-GGTGGCTTAAATCTGCTTCACTACTGCTTA
1 GATCTGCTCCACTACTGCTTAGGGAGATAGGACTCGCCATCTTCGATCTGCTCCACTACTGCTTA
* * * *
7456687 GGAAGATAAGATTCGCCGTCTTC
66 GGGAGATAGGACT-GCCGTCTTA
**** ** * *
7456710 GATCTGCTCCACTACTGCTTAGGGAGATAGGACT-GGTGGCTTAAATCTGGTTCACTACTGCTTA
1 GATCTGCTCCACTACTGCTTAGGGAGATAGGACTCGCCATCTTCGATCTGCTCCACTACTGCTTA
* * * *
7456774 GGAAGAT-GAGATTCGCCATCTTC
66 GGGAGATAG-GACT-GCCGTCTTA
* * *
7456797 GATCTGCTCCACTACTGCTTAGGGAGATAGGA-TCTACCATCTTTGACCTGCTCCACTACTGCTT
1 GATCTGCTCCACTACTGCTTAGGGAGATAGGACTC-GCCATCTTCGATCTGCTCCACTACTGCTT
** *
7456861 AGGGAGATAGGACTGGTGGCTTA
65 AGGGAGATAGGACTGCCGTCTTA
* * * ** * * * * *
7456884 AATTTGCTTCACTACTGCTTAGAAAGATAAGATTCGCCGTATTCGATCTGCTCCACTACTTCTTA
1 GATCTGCTCCACTACTGCTTAGGGAGATAGGACTCGCCATCTTCGATCTGCTCCACTACTGCTTA
* * * *
7456949 GGGGGATAGGATCTACCATCTTT
66 GGGAGATAGGA-CTGCCGTCTTA
* * *** ** * *
7456972 GACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGT-TTAAATCTGCTTCACTACTGTTTA
1 GATCTGCTCCACTACTGCTTAGGGAGATAGGACTCGCCATCTTCGATCTGCTCCACTACTGCTTA
* * * * *
7457036 GGAAGATAAGATTCACCGTCTTC
66 GGGAGATAGGACT-GCCGTCTTA
* * *
7457059 GATCTGCTCCACTACTGCTTAGGGAGATAGGAC-CTACCATCTTTGACCTGCTCCACTACTGCTT
1 GATCTGCTCCACTACTGCTTAGGGAGATAGGACTC-GCCATCTTCGATCTGCTCCACTACTGCTT
** *
7457123 AGGGAGATAGGACTGGTGGCTTA
65 AGGGAGATAGGACTGCCGTCTTA
* * * * * * *
7457146 AATCTGTTTCATTACTGCTTAGGAAGAT-GAGATTCGCCATCTTCGATCTGCTCCACTACTACTT
1 GATCTGCTCCACTACTGCTTAGGGAGATAG-GACTCGCCATCTTCGATCTGCTCCACTACTGCTT
* * *
7457210 AGGGAGATAGGATCTACCATCTTT
65 AGGGAGATAGGA-CTGCCGTCTTA
** * * * *
7457234 GGCCTGCTCCACTACTGCTTAGGGAGATAAGA-TCTACCATCTTCGACCTGTTCCACT
1 GATCTGCTCCACTACTGCTTAGGGAGATAGGACTC-GCCATCTTCGATCTGCTCCACT
7457291 GTAACCTCAG
Statistics
Matches: 594, Mismatches: 141, Indels: 39
0.77 0.18 0.05
Matches are distributed among these distances:
85 1 0.00
86 41 0.07
87 401 0.68
88 150 0.25
89 1 0.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (87 bp):
GATCTGCTCCACTACTGCTTAGGGAGATAGGACTCGCCATCTTCGATCTGCTCCACTACTGCTTA
GGGAGATAGGACTGCCGTCTTA
Found at i:7456664 original size:130 final size:131
Alignment explanation
Indices: 7456448--7456741 Score: 518
Period size: 130 Copynumber: 2.3 Consensus size: 131
7456438 AGACTTGATG
* *
7456448 CGATCTGCTCCACTACTACTTAGGGAGATAAGATCTACAATCTTCGACCTGCTCCACTACTGCTT
1 CGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACAATCTTCGACCTGCTCCACTACTGCTT
*
7456513 AAGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAAATGAGATTCGCCATCT
66 AAGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAAATAAGATTCGCCATCT
7456578 T
131 T
*
7456579 CGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTT-GACCTGCTCCACTACTGCTT
1 CGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACAATCTTCGACCTGCTCCACTACTGCTT
* * *
7456643 AGGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATAAGATTCGCCGTCT
66 AAGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAAATAAGATTCGCCATCT
7456708 T
131 T
7456709 CGATCTGCTCCACTACTGCTTAGGGAGATAGGA
1 CGATCTGCTCCACTACTGCTTAGGGAGATAGGA
7456742 CTGGTGGCTT
Statistics
Matches: 156, Mismatches: 7, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
130 115 0.74
131 41 0.26
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (131 bp):
CGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACAATCTTCGACCTGCTCCACTACTGCTT
AAGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAAATAAGATTCGCCATCT
T
Found at i:7456738 original size:217 final size:218
Alignment explanation
Indices: 7456450--7456959 Score: 862
Period size: 217 Copynumber: 2.3 Consensus size: 218
7456440 ACTTGATGCG
* * * * ** *
7456450 ATCTGCTCCACTACTACTTAGGGAGATAAGA-TCTACAATCTTCGACCTGCTCCACTACTGCTTA
1 ATCTGCTTCACTACTGCTTAGGAAGATAAGATTC-GCCGTCTTCGATCTGCTCCACTACTGCTTA
*
7456514 AGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAAATGAGATTCGCCATCTT
65 GGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAAATGAGATTCGCCATCTT
7456579 CGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATC-TTGACCTGCTCCACTACTGCTT
130 CGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGACCTGCTCCACTACTGCTT
7456643 AGGGAGATAGGACTGGTGGCTTAA
195 AGGGAGATAGGACTGGTGGCTTAA
7456667 ATCTGCTTCACTACTGCTTAGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAG
1 ATCTGCTTCACTACTGCTTAGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAG
* *
7456732 GGAGATAGGACTGGTGGCTTAAATCTGGTTCACTACTGCTTAGGAAGATGAGATTCGCCATCTTC
66 GGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAAATGAGATTCGCCATCTTC
7456797 GATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGACCTGCTCCACTACTGCTTA
131 GATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGACCTGCTCCACTACTGCTTA
7456862 GGGAGATAGGACTGGTGGCTTAA
196 GGGAGATAGGACTGGTGGCTTAA
* * * *
7456885 ATTTGCTTCACTACTGCTTAGAAAGATAAGATTCGCCGTATTCGATCTGCTCCACTACTTCTTAG
1 ATCTGCTTCACTACTGCTTAGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAG
*
7456950 GGGGATAGGA
66 GGAGATAGGA
7456960 TCTACCATCT
Statistics
Matches: 276, Mismatches: 15, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
217 158 0.57
218 118 0.43
ACGTcount: A:0.24, C:0.24, G:0.23, T:0.30
Consensus pattern (218 bp):
ATCTGCTTCACTACTGCTTAGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAG
GGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAAATGAGATTCGCCATCTTC
GATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGACCTGCTCCACTACTGCTTA
GGGAGATAGGACTGGTGGCTTAA
Found at i:7456868 original size:131 final size:131
Alignment explanation
Indices: 7456667--7457262 Score: 951
Period size: 131 Copynumber: 4.5 Consensus size: 131
7456657 GGTGGCTTAA
* * * * * * *
7456667 ATCTGCTTCACTACTGCTTAGGAAGATAAGAT-TCGCCGTCTTCGATCTGCTCCACTACTGCTTA
1 ATCTGCTCCACTACTGCTTAGGGAGATAGGATCT-ACCATCTTTGACCTGCTCCACTACTGCTTA
* *
7456731 GGGAGATAGGACTGGTGGCTTAAATCTGGTTCACTACTGCTTAGGAAGATGAGATTCGCCATCTT
65 GGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATAAGATTCGCCATCTT
7456796 CG
130 CG
7456798 ATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGACCTGCTCCACTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGACCTGCTCCACTACTGCTTAG
* * * *
7456863 GGAGATAGGACTGGTGGCTTAAATTTGCTTCACTACTGCTTAGAAAGATAAGATTCGCCGTATTC
66 GGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATAAGATTCGCCATCTTC
7456928 G
131 G
* *
7456929 ATCTGCTCCACTACTTCTTAGGGGGATAGGATCTACCATCTTTGACCTGCTCCACTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGACCTGCTCCACTACTGCTTAG
* * * *
7456994 GGAGATAGGACTGGTGGTTTAAATCTGCTTCACTACTGTTTAGGAAGATAAGATTCACCGTCTTC
66 GGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATAAGATTCGCCATCTTC
7457059 G
131 G
*
7457060 ATCTGCTCCACTACTGCTTAGGGAGATAGGACCTACCATCTTTGACCTGCTCCACTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGACCTGCTCCACTACTGCTTAG
* * *
7457125 GGAGATAGGACTGGTGGCTTAAATCTGTTTCATTACTGCTTAGGAAGATGAGATTCGCCATCTTC
66 GGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATAAGATTCGCCATCTTC
7457190 G
131 G
* *
7457191 ATCTGCTCCACTACTACTTAGGGAGATAGGATCTACCATCTTTGGCCTGCTCCACTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGACCTGCTCCACTACTGCTTAG
7457256 GGAGATA
66 GGAGATA
7457263 AGATCTACCA
Statistics
Matches: 430, Mismatches: 34, Indels: 2
0.92 0.07 0.00
Matches are distributed among these distances:
131 429 1.00
132 1 0.00
ACGTcount: A:0.23, C:0.23, G:0.22, T:0.31
Consensus pattern (131 bp):
ATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGACCTGCTCCACTACTGCTTAG
GGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATAAGATTCGCCATCTTC
G
Found at i:7457022 original size:218 final size:218
Alignment explanation
Indices: 7456490--7457091 Score: 771
Period size: 218 Copynumber: 2.8 Consensus size: 218
7456480 ATCTACAATC
* * **** * *
7456490 TTCGACCTGCTCCACTACTGCTTAAGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCT
1 TTCGATCTGCTCCACTACTGCTTAGGGAGATAGGACTACCAGCTTAAACCTGCTCCACTACTGCT
* * **
7456555 TAGGAAAATGAGATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCAT
66 TAGGAAGATGAGACTCGCCATCTTAAATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCAT
7456620 C-TTGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGC
131 CTTTGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGC
* *
7456684 TTAGGAAGATAAGATTCGCCGTC
196 TTAGAAAGATAAGATTCGCCGTA
**** * * *
7456707 TTCGATCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTGGTTCACTACTGCT
1 TTCGATCTGCTCCACTACTGCTTAGGGAGATAGGACTACCAGCTTAAACCTGCTCCACTACTGCT
* **
7456772 TAGGAAGATGAGATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCAT
66 TAGGAAGATGAGACTCGCCATCTTAAATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCAT
*
7456837 CTTTGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATTTGCTTCACTACTGC
131 CTTTGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGC
7456902 TTAGAAAGATAAGATTCGCCGTA
196 TTAGAAAGATAAGATTCGCCGTA
* * * **
7456925 TTCGATCTGCTCCACTACTTCTTAGGGGGATAGGATCTACCATCTTTGACCTGCTCCACTACTGC
1 TTCGATCTGCTCCACTACTGCTTAGGGAGATAGGA-CTACCAGCTTAAACCTGCTCCACTACTGC
* * *** * * * *
7456990 TTAGGGAGAT-AGGACTGGTGGT-TTAAATCTGCTTCACTACTGTTTAGGAAGATAAGAT-TCAC
65 TTAGGAAGATGA-GACTCGCCATCTTAAATCTGCTCCACTACTGCTTAGGGAGATAGGATCT-AC
* * *
7457052 CGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGAC
128 CATCTTTGACCTGCTCCACTACTGCTTAGGGAGATAGGAC
7457092 CTACCATCTT
Statistics
Matches: 347, Mismatches: 34, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
217 128 0.37
218 186 0.54
219 33 0.10
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.30
Consensus pattern (218 bp):
TTCGATCTGCTCCACTACTGCTTAGGGAGATAGGACTACCAGCTTAAACCTGCTCCACTACTGCT
TAGGAAGATGAGACTCGCCATCTTAAATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCAT
CTTTGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGC
TTAGAAAGATAAGATTCGCCGTA
Found at i:7457456 original size:44 final size:45
Alignment explanation
Indices: 7457408--7457528 Score: 151
Period size: 44 Copynumber: 2.7 Consensus size: 45
7457398 TCCTTTATTT
*
7457408 TAATCCGCTCCACTGTAACTTCAGGGAGATAGGA-TTAC-TAGCTC
1 TAATCCGCTCCACTGTAACTTCAGGGAGATAAGACTTACATA-CTC
* * *
7457452 TAATCTGCTCCACTGTAACCTCAGGGAGATAAGACTTACATATTC
1 TAATCCGCTCCACTGTAACTTCAGGGAGATAAGACTTACATACTC
*
7457497 -AA-CCTGCCCCACTGTAACTTCAGGGAGATAAG
1 TAATCC-GCTCCACTGTAACTTCAGGGAGATAAG
7457529 GTTTGTGGCT
Statistics
Matches: 67, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
43 1 0.01
44 58 0.87
45 6 0.09
46 2 0.03
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (45 bp):
TAATCCGCTCCACTGTAACTTCAGGGAGATAAGACTTACATACTC
Found at i:7457689 original size:263 final size:259
Alignment explanation
Indices: 7457254--7457956 Score: 697
Period size: 263 Copynumber: 2.7 Consensus size: 259
7457244 ACTACTGCTT
*** * *
7457254 AGGGAGATAAGATCTACCATCTTCGACCTGTTCCACTGTAACCTCAGGGAGATAAGATCTGAAAT
1 AGGGAGATAAGATCT-CTGGCTTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAAT
* * *
7457319 TCTTCGGTTTACTCCACTGTAACTTCAGGGAGATAAGACCTGATGCAATCTACTTTACTGTAACT
65 TCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGA-CT-ATGCAATCTACTTCACTGTAACT
* ** *
7457384 TCAGAGAGATGAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGAT-TACTA
128 TCAGAGAGATGAGAGCCTTTATTGCAATCCGCTCCACTGTAACTTCAGAGAGATAGGATCT-CTA
* *
7457448 GCTCTAATCTGCTCCACTGTAACCTCAGGGAGATAAGACTTA-CATATTCAACCTGCCCCACTGT
192 -CTCTAATCCGCTCCACTATAACCTCAGGGAGATAAGA--TAGCATATTCAACCTGCCCCACTGT
7457512 AA-CTTC
254 AATC-TC
* * * * * *
7457518 AGGGAGATAAGGTTTGTGGCTTCGATCTGCTCCTCTGTAATCTCAGGGAGATAAGATATGAAATT
1 AGGGAGATAAGATCTCTGGCTTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATT
*
7457583 CTTCGGTCTATTCCACTGTAACCTCAGGGAGATAAGACT-TGCATAT-TCAGCTTGCCCCACTGT
66 CTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACTATGCA-ATCT-A-CTT----CACTGT
* * * * **
7457646 AACTTTAGGGAGAT-A-AGGCTTTA-TGCGA-CCTGCTCTGCTGTAACTTCAGAGAGATAGGATC
124 AACTTCAGAGAGATGAGAGCCTTTATTGCAATCC-GCTCCACTGTAACTTCAGAGAGATAGGAT-
* * * * * * ** * * * *
7457707 CTTTATTTTAATCCGCTCCACTATAACTTCTGGGAGATAGGATAGTGTATTCGATCTGCTCCGCT
187 CTCTACTCTAATCCGCTCCACTATAACCTCAGGGAGATAAGATAGCATATTCAACCTGCCCCACT
7457772 GTAATCTC
252 GTAATCTC
* *
7457780 AGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAATATCT-AAACT
1 AGGGAGATAAGATCTCTGGCTTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAA-T
* **
7457844 TCTTCGGTCTACTCCACTGTAATCTCAGGGAGATAAGACCTGATGCAATCTACTTTGCTGTAACT
65 TCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGA-CT-ATGCAATCTACTTCACTGTAACT
* * * ** **
7457909 TCAGAGAGATAAGATCTTTTATTTTAATCCGCTCCACCATAACTTCAG
128 TCAGAGAGATGAGAGCCTTTATTGCAATCCGCTCCACTGTAACTTCAG
7457957 GGGTGTGGGT
Statistics
Matches: 355, Mismatches: 63, Indels: 44
0.77 0.14 0.10
Matches are distributed among these distances:
259 16 0.05
260 6 0.02
261 13 0.04
262 131 0.37
263 141 0.40
264 24 0.07
265 7 0.02
266 17 0.05
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (259 bp):
AGGGAGATAAGATCTCTGGCTTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATT
CTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACTATGCAATCTACTTCACTGTAACTTCA
GAGAGATGAGAGCCTTTATTGCAATCCGCTCCACTGTAACTTCAGAGAGATAGGATCTCTACTCT
AATCCGCTCCACTATAACCTCAGGGAGATAAGATAGCATATTCAACCTGCCCCACTGTAATCTC
Found at i:7457785 original size:43 final size:44
Alignment explanation
Indices: 7457716--7457924 Score: 122
Period size: 44 Copynumber: 4.8 Consensus size: 44
7457706 CCTTTATTTT
* * * * * * *
7457716 AATCCGCTCCACTATAACTTCTGGGAGATAGGAT-AGTGTATTC
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCACTGGATTC
* * * * *
7457759 GATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTC
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCACTGGATTC
* **
7457803 AATCTGCTCCACTGTAACCTCAGGGAGATAATATCTAAACT-TCTTC
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATC---ACTGGATTC
** * * *
7457849 GGTCTACTCCACTGTAATCTCAGGGAGATAAGA-C-CT-GATGC
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCACTGGATTC
* *** * *
7457890 AATCTACTTTGCTGTAACTTCAGAGAGATAAGATC
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATC
7457925 TTTTATTTTA
Statistics
Matches: 127, Mismatches: 34, Indels: 11
0.74 0.20 0.06
Matches are distributed among these distances:
41 29 0.23
42 1 0.01
43 26 0.20
44 36 0.28
45 1 0.01
46 32 0.25
47 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (44 bp):
AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCACTGGATTC
Found at i:7457785 original size:218 final size:219
Alignment explanation
Indices: 7457505--7457958 Score: 524
Period size: 218 Copynumber: 2.1 Consensus size: 219
7457495 TCAACCTGCC
* * * * *
7457505 CCACTGTAACTTCAGGGAGATAAGGTTTGTGGCTTCGATCTGCTCCTCTGTAATCTCAGGGAGAT
1 CCACTATAACTTCAGGGAGATAAGGATAGTGGATTCGATCTGCTCCGCTGTAATCTCAGGGAGAT
* ** * **
7457570 AAGATATGAAAT-TCTTCGGTCTATTCCACTGTAACCTCAGGGAGATAAGA-CT-TGCATATTCA
66 AAGATAT---ATGGCTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGATCTAAACATATTC-
* * * * * * *
7457632 GCT-TGCCCCACTGTAA-CTTTAGGGAGATAAGGCTTTATGCGACCTGCTCTGCTGTAACTTCAG
127 GCTCTACCCCACTGTAATC-TCAGGGAGATAAGACCTGATGCAACCTACTCTGCTGTAACTTCAG
*
7457695 AGAGATAGGATCCTTTATTTTAATCCGCT
191 AGAGATAAGATCCTTTATTTTAATCCGCT
* *
7457724 CCACTATAACTTCTGGGAGAT-AGGATAGTGTATTCGATCTGCTCCGCTGTAATCTCAGGGAGAT
1 CCACTATAACTTCAGGGAGATAAGGATAGTGGATTCGATCTGCTCCGCTGTAATCTCAGGGAGAT
* * * * * * *
7457788 AAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAATATCTAAACTTCTTCGGTC
66 AAGATATATGGCTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGATCTAAACATATTCGCTC
* * *
7457853 TACTCCACTGTAATCTCAGGGAGATAAGACCTGATGCAATCTACTTTGCTGTAACTTCAGAGAGA
131 TACCCCACTGTAATCTCAGGGAGATAAGACCTGATGCAACCTACTCTGCTGTAACTTCAGAGAGA
*
7457918 TAAGATCTTTTATTTTAATCCGCT
196 TAAGATCCTTTATTTTAATCCGCT
*
7457942 CCACCATAACTTCAGGG
1 CCACTATAACTTCAGGG
7457959 GTGTGGGTAA
Statistics
Matches: 196, Mismatches: 34, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
215 1 0.01
216 32 0.16
217 4 0.02
218 139 0.71
219 20 0.10
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.31
Consensus pattern (219 bp):
CCACTATAACTTCAGGGAGATAAGGATAGTGGATTCGATCTGCTCCGCTGTAATCTCAGGGAGAT
AAGATATATGGCTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGATCTAAACATATTCGCTC
TACCCCACTGTAATCTCAGGGAGATAAGACCTGATGCAACCTACTCTGCTGTAACTTCAGAGAGA
TAAGATCCTTTATTTTAATCCGCT
Found at i:7457871 original size:46 final size:44
Alignment explanation
Indices: 7457756--7457881 Score: 155
Period size: 44 Copynumber: 2.8 Consensus size: 44
7457746 GGATAGTGTA
*
7457756 TTCGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGC
1 TTCGATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTCTGGC
* * * *
7457800 TTCAATCTGCTCCACTGTAACCTCAGGGAGATAATATCTAAACT-TC
1 TTCGATCTGCTCCACTGTAATCTCAGGGAGATAAGATCT---CTGGC
* *
7457846 TTCGGTCTACTCCACTGTAATCTCAGGGAGATAAGA
1 TTCGATCTGCTCCACTGTAATCTCAGGGAGATAAGA
7457882 CCTGATGCAA
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
44 35 0.51
46 32 0.46
47 2 0.03
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (44 bp):
TTCGATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTCTGGC
Found at i:7458318 original size:69 final size:67
Alignment explanation
Indices: 7458207--7458334 Score: 229
Period size: 69 Copynumber: 1.9 Consensus size: 67
7458197 GACCGACTTC
7458207 TTCAAAGCATCACTTTAATCAGATTGCCCCCACTGTGAAATCCACTAGGACACAAAATTTGTACC
1 TTCAAAGCATCACTTTAATCAGATTGCCCCCACTGTGAAATCCACTAGG--ACAAAATTTGTACC
7458272 ATCA
64 ATCA
*
7458276 TTCAAAGCATCACTTTAGTCAGATTGCCCCCACTGTGAAATCCACTAGGACAAAATTTG
1 TTCAAAGCATCACTTTAATCAGATTGCCCCCACTGTGAAATCCACTAGGACAAAATTTG
7458335 ATGTCTTAGT
Statistics
Matches: 58, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
67 10 0.17
69 48 0.83
ACGTcount: A:0.34, C:0.27, G:0.13, T:0.27
Consensus pattern (67 bp):
TTCAAAGCATCACTTTAATCAGATTGCCCCCACTGTGAAATCCACTAGGACAAAATTTGTACCAT
CA
Found at i:7465229 original size:11 final size:10
Alignment explanation
Indices: 7465173--7465267 Score: 61
Period size: 10 Copynumber: 9.1 Consensus size: 10
7465163 ATGTGTATAT
7465173 ATAAGTTTTTA
1 ATAA-TTTTTA
*
7465184 ATTATTATTT-
1 ATAATT-TTTA
7465194 ATAATTTATT-
1 ATAATTT-TTA
*
7465204 ATAATTCTTA
1 ATAATTTTTA
7465214 ATAATTTTTAA
1 ATAATTTTT-A
*
7465225 ATAATTTTTTT
1 ATAA-TTTTTA
*
7465236 CTAATTTTT-
1 ATAATTTTTA
*
7465245 CTAATTATTTA
1 ATAATT-TTTA
7465256 ATAATTATTTA
1 ATAATT-TTTA
7465267 A
1 A
7465268 GAAACTATTT
Statistics
Matches: 70, Mismatches: 7, Indels: 14
0.77 0.08 0.15
Matches are distributed among these distances:
9 9 0.13
10 31 0.44
11 25 0.36
12 5 0.07
ACGTcount: A:0.37, C:0.03, G:0.01, T:0.59
Consensus pattern (10 bp):
ATAATTTTTA
Found at i:7466601 original size:26 final size:26
Alignment explanation
Indices: 7466572--7466628 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
7466562 AATAAGAAAG
* * *
7466572 AAAACAACAAAA-ATAAAATCTACTCT
1 AAAA-AACAAAAGAGAAAACCTAATCT
*
7466598 AAAAAAGAAAAGAGAAAACCTAATCT
1 AAAAAACAAAAGAGAAAACCTAATCT
7466624 AAAAA
1 AAAAA
7466629 TGAAAAGAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
25 6 0.23
26 20 0.77
ACGTcount: A:0.67, C:0.14, G:0.05, T:0.14
Consensus pattern (26 bp):
AAAAAACAAAAGAGAAAACCTAATCT
Found at i:7466633 original size:26 final size:26
Alignment explanation
Indices: 7466586--7466641 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
7466576 CAACAAAAAT
* * *
7466586 AAAATCTACTCTAAAAAAGAAAAGAG
1 AAAACCTAATCTAAAAAAGAAAAGAA
*
7466612 AAAACCTAATCTAAAAATGAAAAGAA
1 AAAACCTAATCTAAAAAAGAAAAGAA
7466638 AAAA
1 AAAA
7466642 AAAAGGAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.66, C:0.11, G:0.09, T:0.14
Consensus pattern (26 bp):
AAAACCTAATCTAAAAAAGAAAAGAA
Found at i:7466650 original size:17 final size:17
Alignment explanation
Indices: 7466624--7466656 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7466614 AACCTAATCT
*
7466624 AAAAATGAAAAGAAAAA
1 AAAAAGGAAAAGAAAAA
7466641 AAAAAGGAAAAGAAAA
1 AAAAAGGAAAAGAAAA
7466657 CGTAACTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (17 bp):
AAAAAGGAAAAGAAAAA
Found at i:7468590 original size:34 final size:36
Alignment explanation
Indices: 7468552--7468618 Score: 95
Period size: 34 Copynumber: 1.9 Consensus size: 36
7468542 GACTATAATA
*
7468552 ATAAGCCAAATCTTCTTAT-ATCAC-AA-ATGCTACT
1 ATAAGCCAAAT-TACTTATAATCACGAATATGCTACT
7468586 ATAAGCCAAATTACTTATAATCACGAATATGCT
1 ATAAGCCAAATTACTTATAATCACGAATATGCT
7468619 CACACATTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
33 6 0.21
34 16 0.55
35 2 0.07
36 5 0.17
ACGTcount: A:0.40, C:0.21, G:0.07, T:0.31
Consensus pattern (36 bp):
ATAAGCCAAATTACTTATAATCACGAATATGCTACT
Found at i:7468875 original size:43 final size:43
Alignment explanation
Indices: 7468828--7468924 Score: 124
Period size: 43 Copynumber: 2.3 Consensus size: 43
7468818 TCCTAGACGT
* * *
7468828 GGTCTTATATGTAATCATATATCGATGCCAATGTCCCAGACAG
1 GGTCTTACACGTAATCAGATATCGATGCCAATGTCCCAGACAG
* *
7468871 GGTCTTACACGTAATCAGATATCGATGTCGATGTCCCAGAC-G
1 GGTCTTACACGTAATCAGATATCGATGCCAATGTCCCAGACAG
*
7468913 TGGTCGTACACG
1 -GGTCTTACACG
7468925 AAAACACATA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
42 1 0.02
43 46 0.98
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (43 bp):
GGTCTTACACGTAATCAGATATCGATGCCAATGTCCCAGACAG
Found at i:7468936 original size:43 final size:43
Alignment explanation
Indices: 7468846--7468936 Score: 112
Period size: 43 Copynumber: 2.1 Consensus size: 43
7468836 ATGTAATCAT
* * * *
7468846 ATATCGATGCCAATGTCCCAGACAGGGTCTTACACGTAATCAG
1 ATATCGATGCCAATGTCCCAGACAGGGTCGTACACGAAAACAC
* *
7468889 ATATCGATGTCGATGTCCCAGAC-GTGGTCGTACACGAAAACAC
1 ATATCGATGCCAATGTCCCAGACAG-GGTCGTACACGAAAACAC
7468932 ATATC
1 ATATC
7468937 AGAGTCCTAT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
42 1 0.02
43 40 0.98
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.23
Consensus pattern (43 bp):
ATATCGATGCCAATGTCCCAGACAGGGTCGTACACGAAAACAC
Found at i:7469853 original size:28 final size:28
Alignment explanation
Indices: 7469813--7469869 Score: 89
Period size: 28 Copynumber: 2.0 Consensus size: 28
7469803 TATGTTTGTT
7469813 TTTATTATAATAA-CTTTATAATATATTA
1 TTTATTATAATAACCTTTATAAT-TATTA
*
7469841 TTTATTATTATAACCTTTATAATTATTA
1 TTTATTATAATAACCTTTATAATTATTA
7469869 T
1 T
7469870 AAAAACCATA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 18 0.67
29 9 0.33
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.56
Consensus pattern (28 bp):
TTTATTATAATAACCTTTATAATTATTA
Found at i:7472746 original size:17 final size:18
Alignment explanation
Indices: 7472724--7472759 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
7472714 GAAAATTATT
*
7472724 AAAATATAT-AATTTTAA
1 AAAATAAATAAATTTTAA
7472741 AAAATAAATAAATTTTAA
1 AAAATAAATAAATTTTAA
7472759 A
1 A
7472760 TTATACTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (18 bp):
AAAATAAATAAATTTTAA
Found at i:7474840 original size:18 final size:18
Alignment explanation
Indices: 7474817--7474861 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
7474807 GCTTCGAAAC
* *
7474817 GGGAAAGGGAAGGGGTAG
1 GGGAAAGGGAAGGAGAAG
7474835 GGGAAAGGGAAGGAGAAG
1 GGGAAAGGGAAGGAGAAG
7474853 GGGAAAGGG
1 GGGAAAGGG
7474862 GAGAAGAATG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.38, C:0.00, G:0.60, T:0.02
Consensus pattern (18 bp):
GGGAAAGGGAAGGAGAAG
Found at i:7474869 original size:18 final size:18
Alignment explanation
Indices: 7474817--7474869 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
7474807 GCTTCGAAAC
** *
7474817 GGGAAAGGGAAGGGGTAG
1 GGGAAAGGGAAGAAGAAG
*
7474835 GGGAAAGGGAAGGAGAAG
1 GGGAAAGGGAAGAAGAAG
*
7474853 GGGAAAGGGGAGAAGAA
1 GGGAAAGGGAAGAAGAA
7474870 TGGGTCATTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.42, C:0.00, G:0.57, T:0.02
Consensus pattern (18 bp):
GGGAAAGGGAAGAAGAAG
Found at i:7476319 original size:20 final size:21
Alignment explanation
Indices: 7476296--7476334 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
7476286 GATGTCATAT
*
7476296 ATTTATAAAA-AAAAAAATTC
1 ATTTACAAAATAAAAAAATTC
7476316 ATTTACAAAATAAAAAAAT
1 ATTTACAAAATAAAAAAAT
7476335 AAAAAATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.28
Consensus pattern (21 bp):
ATTTACAAAATAAAAAAATTC
Found at i:7482359 original size:22 final size:22
Alignment explanation
Indices: 7482317--7482359 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
7482307 AAAACTTTAG
* *
7482317 ATCATTATTATTATTACTATTA
1 ATCATCATTATTATTAATATTA
7482339 ATCATCATTAATT-TTAATATT
1 ATCATCATT-ATTATTAATATT
7482360 TTTTTTAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 15 0.83
23 3 0.17
ACGTcount: A:0.37, C:0.09, G:0.00, T:0.53
Consensus pattern (22 bp):
ATCATCATTATTATTAATATTA
Found at i:7482490 original size:33 final size:33
Alignment explanation
Indices: 7482425--7482490 Score: 82
Period size: 33 Copynumber: 2.0 Consensus size: 33
7482415 TAACTTCAAA
*
7482425 TTTAGTTTATTATTTCATCATTTGTCTTTTTATT
1 TTTAGTTTATTATTTCAT-ATTTGGCTTTTTATT
7482459 TTTA-TTTATTATTATCAT-TTTGGCTTGTTTAT
1 TTTAGTTTATTATT-TCATATTTGGCTT-TTTAT
7482491 CGTATTTTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
32 7 0.24
33 14 0.48
34 8 0.28
ACGTcount: A:0.18, C:0.08, G:0.08, T:0.67
Consensus pattern (33 bp):
TTTAGTTTATTATTTCATATTTGGCTTTTTATT
Found at i:7499907 original size:71 final size:71
Alignment explanation
Indices: 7499791--7499935 Score: 245
Period size: 71 Copynumber: 2.0 Consensus size: 71
7499781 ATTTGGGACG
*
7499791 ATCCTTACCTATGGAAGCATTGCTCCGATCAGCTAATCCGACGGTGTGTAACAGAAACAGAGGTA
1 ATCCTTACCTATGGAAGCAATGCTCCGATCAGCTAATCCGACGGTGTGTAACAGAAACAGAGGTA
7499856 CAGTCT
66 CAGTCT
* * * *
7499862 ATCCTTGCCTATGGAAGCAATGCTCCGATCAGGTAATCCGACGGTGTGTAGCAGAAATAGAGGTA
1 ATCCTTACCTATGGAAGCAATGCTCCGATCAGCTAATCCGACGGTGTGTAACAGAAACAGAGGTA
7499927 CAGTCT
66 CAGTCT
7499933 ATC
1 ATC
7499936 TTAACTTTTT
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
71 69 1.00
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.24
Consensus pattern (71 bp):
ATCCTTACCTATGGAAGCAATGCTCCGATCAGCTAATCCGACGGTGTGTAACAGAAACAGAGGTA
CAGTCT
Found at i:7501396 original size:6 final size:6
Alignment explanation
Indices: 7501348--7501399 Score: 52
Period size: 6 Copynumber: 8.3 Consensus size: 6
7501338 TTAATTTTCC
* *
7501348 TATTAT TATTATT TATTTT TACTATTT TA-TTT TATTTT CATTTT TATTTT
1 TATTTT TATT-TT TATTTT TA-T-TTT TATTTT TATTTT TATTTT TATTTT
7501398 TA
1 TA
7501400 CAGGAAACAT
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
5 5 0.13
6 23 0.59
7 6 0.15
8 5 0.13
ACGTcount: A:0.23, C:0.04, G:0.00, T:0.73
Consensus pattern (6 bp):
TATTTT
Found at i:7501398 original size:18 final size:20
Alignment explanation
Indices: 7501335--7501399 Score: 66
Period size: 21 Copynumber: 3.4 Consensus size: 20
7501325 AAAAAAAAAC
*
7501335 ATTTTAATTTTC-CTATTATT
1 ATTTTTATTTTCACTATT-TT
*
7501355 ATTATTTATTTTTACTATTTT
1 ATT-TTTATTTTCACTATTTT
7501376 A-TTTTATTTTCA-T-TTTT
1 ATTTTTATTTTCACTATTTT
7501393 ATTTTTA
1 ATTTTTA
7501400 CAGGAAACAT
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
17 5 0.13
18 6 0.15
19 9 0.23
20 4 0.10
21 10 0.26
22 5 0.13
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.71
Consensus pattern (20 bp):
ATTTTTATTTTCACTATTTT
Found at i:7504218 original size:17 final size:16
Alignment explanation
Indices: 7504193--7504228 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
7504183 AACCCTAGTT
* *
7504193 TTTCCCTTTTCTTTTC
1 TTTCCCCTTTCCTTTC
7504209 TTTCCCCTTTCCTTTC
1 TTTCCCCTTTCCTTTC
7504225 TTTC
1 TTTC
7504229 TTTTTCATCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (16 bp):
TTTCCCCTTTCCTTTC
Found at i:7504397 original size:19 final size:20
Alignment explanation
Indices: 7504354--7504390 Score: 67
Period size: 19 Copynumber: 1.9 Consensus size: 20
7504344 ATTAATAACC
7504354 AATACATAT-TTTATTATGA
1 AATACATATGTTTATTATGA
7504373 AATACATATGTTTATTAT
1 AATACATATGTTTATTAT
7504391 TATTACACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.41, C:0.05, G:0.05, T:0.49
Consensus pattern (20 bp):
AATACATATGTTTATTATGA
Found at i:7504490 original size:17 final size:16
Alignment explanation
Indices: 7504470--7504503 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7504460 ATTTATTCCA
7504470 TAATATAATAATATAAT
1 TAATATAA-AATATAAT
*
7504487 TAATATAAATTATAAT
1 TAATATAAAATATAAT
7504503 T
1 T
7504504 TTTAACACCC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
TAATATAAAATATAAT
Found at i:7506643 original size:21 final size:22
Alignment explanation
Indices: 7506617--7506657 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
7506607 TACCCCCTAA
7506617 ATCCCTTAA-TTAACTCCCCCT
1 ATCCCTTAATTTAACTCCCCCT
*
7506638 ATCCCTTAATTTCACTCCCC
1 ATCCCTTAATTTAACTCCCC
7506658 AATCGTCCAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.22, C:0.44, G:0.00, T:0.34
Consensus pattern (22 bp):
ATCCCTTAATTTAACTCCCCCT
Found at i:7512896 original size:15 final size:15
Alignment explanation
Indices: 7512876--7512905 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
7512866 ATAATTTAAA
7512876 CTATCTCCTAAACCC
1 CTATCTCCTAAACCC
7512891 CTATCTCCTAAACCC
1 CTATCTCCTAAACCC
7512906 TACATCATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.47, G:0.00, T:0.27
Consensus pattern (15 bp):
CTATCTCCTAAACCC
Found at i:7513732 original size:81 final size:82
Alignment explanation
Indices: 7513637--7513795 Score: 248
Period size: 81 Copynumber: 2.0 Consensus size: 82
7513627 CAGATAAAAT
* * * * **
7513637 GCATTAGCGGTGCTTTTTCAAAAACGCCGCTAAAAGTCTGAGCATTAGCGGCGCTT-TTTTAAAA
1 GCATTAGCAGTGCTTTCTAAAAAACGCCGCTAAAAGCCTGAGCATTAGCGGCGCTTCTTCAAAAA
7513701 CGCCGCTAAAAGCATGA
66 CGCCGCTAAAAGCATGA
*
7513718 GCATTAGCAGTGCTTTCTAAAAAACGCCGCTAAAAGCCTGAGCATTAGTGGCGCTTCTTCAAAAA
1 GCATTAGCAGTGCTTTCTAAAAAACGCCGCTAAAAGCCTGAGCATTAGCGGCGCTTCTTCAAAAA
7513783 CGCCGCTAAAAGC
66 CGCCGCTAAAAGC
7513796 CCCGAAAGGT
Statistics
Matches: 70, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
81 51 0.73
82 19 0.27
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (82 bp):
GCATTAGCAGTGCTTTCTAAAAAACGCCGCTAAAAGCCTGAGCATTAGCGGCGCTTCTTCAAAAA
CGCCGCTAAAAGCATGA
Found at i:7513796 original size:41 final size:40
Alignment explanation
Indices: 7513637--7513796 Score: 212
Period size: 41 Copynumber: 3.9 Consensus size: 40
7513627 CAGATAAAAT
* *
7513637 GCATTAGCGGTGCTTTTTCAAAAACGCCGCTAAAAGTCTGA
1 GCATTAGCGGCGC-TTTTCAAAAACGCCGCTAAAAGCCTGA
** *
7513678 GCATTAGCGGCGCTTTTTTAAAACGCCGCTAAAAGCATGA
1 GCATTAGCGGCGCTTTTCAAAAACGCCGCTAAAAGCCTGA
* * *
7513718 GCATTAGCAGTGCTTTCTAAAAAACGCCGCTAAAAGCCTGA
1 GCATTAGCGGCGCTTT-TCAAAAACGCCGCTAAAAGCCTGA
*
7513759 GCATTAGTGGCGCTTCTTCAAAAACGCCGCTAAAAGCC
1 GCATTAGCGGCGCTT-TTCAAAAACGCCGCTAAAAGCC
7513797 CCGAAAGGTT
Statistics
Matches: 103, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
40 37 0.36
41 65 0.63
42 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (40 bp):
GCATTAGCGGCGCTTTTCAAAAACGCCGCTAAAAGCCTGA
Found at i:7516423 original size:37 final size:35
Alignment explanation
Indices: 7516373--7516456 Score: 132
Period size: 37 Copynumber: 2.3 Consensus size: 35
7516363 ACAAAGTGAT
7516373 AAGTGATAAGTGGCTACACTTATCTGATCAAGAAAC
1 AAGTGATAAGTGGCTACACTTATCTGATC-AGAAAC
**
7516409 AAAGTGATAAGTGGCTACACTTATCTGATCAGGGAC
1 -AAGTGATAAGTGGCTACACTTATCTGATCAGAAAC
7516445 AAGTGATAAGTG
1 AAGTGATAAGTG
7516457 ATCATACGTA
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
35 12 0.27
36 4 0.09
37 29 0.64
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.25
Consensus pattern (35 bp):
AAGTGATAAGTGGCTACACTTATCTGATCAGAAAC
Found at i:7524678 original size:3 final size:3
Alignment explanation
Indices: 7524670--7524700 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
7524660 GATAAATGAG
7524670 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
7524701 GAAGTAAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:7530943 original size:17 final size:18
Alignment explanation
Indices: 7530921--7530956 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
7530911 GAAAATTATT
*
7530921 AAAATATAT-AATTTTAA
1 AAAATAAATAAATTTTAA
7530938 AAAATAAATAAATTTTAA
1 AAAATAAATAAATTTTAA
7530956 A
1 A
7530957 TTATACTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (18 bp):
AAAATAAATAAATTTTAA
Found at i:7533638 original size:11 final size:11
Alignment explanation
Indices: 7533615--7533650 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
7533605 AACTAATCCT
7533615 CTCTCATATTTC
1 CTCTCA-ATTTC
7533627 CTCTCAATTTC
1 CTCTCAATTTC
*
7533638 CTCTAAATTTC
1 CTCTCAATTTC
7533649 CT
1 CT
7533651 TCTAAAATTC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 17 0.74
12 6 0.26
ACGTcount: A:0.19, C:0.33, G:0.00, T:0.47
Consensus pattern (11 bp):
CTCTCAATTTC
Found at i:7533656 original size:12 final size:11
Alignment explanation
Indices: 7533622--7533656 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
7533612 CCTCTCTCAT
*
7533622 ATTTCCTCTCA
1 ATTTCCTCTAA
7533633 ATTTCCTCTAA
1 ATTTCCTCTAA
7533644 ATTTCCTTCTAA
1 ATTTCC-TCTAA
7533656 A
1 A
7533657 ATTCTCTCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 16 0.73
12 6 0.27
ACGTcount: A:0.26, C:0.29, G:0.00, T:0.46
Consensus pattern (11 bp):
ATTTCCTCTAA
Found at i:7533685 original size:51 final size:51
Alignment explanation
Indices: 7533630--7533753 Score: 212
Period size: 51 Copynumber: 2.4 Consensus size: 51
7533620 ATATTTCCTC
* *
7533630 TCAATTTCCTCTAAATTTCCTTCTAAAATTCTCTCAAATCCATATTTAATT
1 TCAATTTCCTCTCAATTTCCTTCCAAAATTCTCTCAAATCCATATTTAATT
7533681 TCAATTTCCTCTCAATTTCCTTCCAAAATTCTCTCAAATCCATATTTAATT
1 TCAATTTCCTCTCAATTTCCTTCCAAAATTCTCTCAAATCCATATTTAATT
* *
7533732 TCAATTTGCTTTCAATTTCCTT
1 TCAATTTCCTCTCAATTTCCTT
7533754 TTTAAAAATA
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 69 1.00
ACGTcount: A:0.28, C:0.25, G:0.01, T:0.46
Consensus pattern (51 bp):
TCAATTTCCTCTCAATTTCCTTCCAAAATTCTCTCAAATCCATATTTAATT
Found at i:7535590 original size:18 final size:18
Alignment explanation
Indices: 7535563--7535602 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
7535553 CAGGTGCGTT
* *
7535563 TCCTAGCCCTTATATGTA
1 TCCTAACCCTTATATCTA
7535581 TCCTAACCCTTATATCTA
1 TCCTAACCCTTATATCTA
7535599 TCCT
1 TCCT
7535603 TTTTCGAGTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.23, C:0.33, G:0.05, T:0.40
Consensus pattern (18 bp):
TCCTAACCCTTATATCTA
Found at i:7535882 original size:21 final size:21
Alignment explanation
Indices: 7535858--7535926 Score: 77
Period size: 21 Copynumber: 3.3 Consensus size: 21
7535848 AGATGCCGTA
* *
7535858 CCGGAACAACCAGAATCCCCG
1 CCGGAACAACAACAATCCCCG
* *
7535879 CCGGAAGAACAACAATCGCCG
1 CCGGAACAACAACAATCCCCG
*
7535900 CCGGAAGAACAACAA-CCGCCG
1 CCGGAACAACAACAATCC-CCG
7535921 CCGGAA
1 CCGGAA
7535927 GCCAGAGAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
20 1 0.02
21 41 0.98
ACGTcount: A:0.36, C:0.38, G:0.23, T:0.03
Consensus pattern (21 bp):
CCGGAACAACAACAATCCCCG
Found at i:7535927 original size:21 final size:21
Alignment explanation
Indices: 7535876--7535927 Score: 95
Period size: 21 Copynumber: 2.5 Consensus size: 21
7535866 ACCAGAATCC
*
7535876 CCGCCGGAAGAACAACAATCG
1 CCGCCGGAAGAACAACAACCG
7535897 CCGCCGGAAGAACAACAACCG
1 CCGCCGGAAGAACAACAACCG
7535918 CCGCCGGAAG
1 CCGCCGGAAG
7535928 CCAGAGAAAG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.35, C:0.37, G:0.27, T:0.02
Consensus pattern (21 bp):
CCGCCGGAAGAACAACAACCG
Found at i:7536083 original size:25 final size:24
Alignment explanation
Indices: 7536053--7536178 Score: 102
Period size: 25 Copynumber: 5.3 Consensus size: 24
7536043 TATTTTGATA
7536053 TTATTTGATGTAATAAAATAGAAG
1 TTATTTGATGTAATAAAATAGAAG
* *
7536077 TTCATTTGATGTAATAAAATAAAAA
1 TT-ATTTGATGTAATAAAATAGAAG
** ** *
7536102 AAATTTTGA-GT--T-ATTTTGATA-
1 TTA-TTTGATGTAATAAAATAGA-AG
7536123 TTATTTGATGTAATAAAATAGAAG
1 TTATTTGATGTAATAAAATAGAAG
*
7536147 TTTATTTGATGTAATAAAATAGAAA
1 -TTATTTGATGTAATAAAATAGAAG
7536172 TT-TTTGA
1 TTATTTGA
7536179 ATATTTTGAA
Statistics
Matches: 79, Mismatches: 14, Indels: 19
0.71 0.12 0.17
Matches are distributed among these distances:
20 5 0.06
21 6 0.08
22 2 0.03
23 7 0.09
24 11 0.14
25 48 0.61
ACGTcount: A:0.44, C:0.01, G:0.13, T:0.42
Consensus pattern (24 bp):
TTATTTGATGTAATAAAATAGAAG
Found at i:7536122 original size:70 final size:69
Alignment explanation
Indices: 7536035--7536187 Score: 247
Period size: 70 Copynumber: 2.2 Consensus size: 69
7536025 TTGTATAAAT
7536035 ATTTTGAATATTTTGATATTATTTGATGTAATAAAATAGAAGTTCATTTGATGTAATAAAATAAA
1 ATTTTGAATATTTTGATATTATTTGATGTAATAAAATAGAAGTTCATTTGATGTAATAAAATAAA
7536100 AAAA
66 AAAA
* *
7536104 ATTTTGAGTTATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAAT--
1 ATTTTGA-ATATTTTGATATTATTTGATGTAATAAAATAGAAGTTCATTTGATGTAATAAAATAA
*
7536167 AGAAA
65 AAAAA
*
7536172 TTTTTGAATATTTTGA
1 ATTTTGAATATTTTGA
7536188 AAATTTTAAT
Statistics
Matches: 78, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
67 8 0.10
68 10 0.13
69 7 0.09
70 53 0.68
ACGTcount: A:0.42, C:0.01, G:0.13, T:0.44
Consensus pattern (69 bp):
ATTTTGAATATTTTGATATTATTTGATGTAATAAAATAGAAGTTCATTTGATGTAATAAAATAAA
AAAA
Found at i:7536155 original size:35 final size:35
Alignment explanation
Indices: 7536046--7536156 Score: 93
Period size: 35 Copynumber: 3.2 Consensus size: 35
7536036 TTTTGAATAT
*
7536046 TTTGATATTATTTGATGTAATAAAATAGAAGTTCA
1 TTTGATATTATTTGATGTAATAAAATAGAAGTTTA
* * *** * * *
7536081 TTTGATGTAATAAAAT-AAAAAAAATTTTG-AG-TTA
1 TTTGATATTATTTGATGTAATAAAA--TAGAAGTTTA
7536115 TTTTGATATTATTTGATGTAATAAAATAGAAGTTTA
1 -TTTGATATTATTTGATGTAATAAAATAGAAGTTTA
7536151 TTTGAT
1 TTTGAT
7536157 GTAATAAAAT
Statistics
Matches: 53, Mismatches: 17, Indels: 12
0.65 0.21 0.15
Matches are distributed among these distances:
34 10 0.19
35 32 0.60
36 11 0.21
ACGTcount: A:0.41, C:0.01, G:0.14, T:0.44
Consensus pattern (35 bp):
TTTGATATTATTTGATGTAATAAAATAGAAGTTTA
Found at i:7536286 original size:47 final size:47
Alignment explanation
Indices: 7536232--7536526 Score: 479
Period size: 47 Copynumber: 6.3 Consensus size: 47
7536222 CCATTAATAA
7536232 CCTAATTAAATTGAAAACCCTAACCTAATTAAATTGAAAACCCTAAC
1 CCTAATTAAATTGAAAACCCTAACCTAATTAAATTGAAAACCCTAAC
* *
7536279 CCTAATTAAATTGAAAACTCTAACCTAATTAAATTGAAAACTCT-AC
1 CCTAATTAAATTGAAAACCCTAACCTAATTAAATTGAAAACCCTAAC
*
7536325 CTTAATTAAATTGAAAACCCTAAACCTAATTAAATTGAAAACCCTAAC
1 CCTAATTAAATTGAAAACCCT-AACCTAATTAAATTGAAAACCCTAAC
* *
7536373 CCTAATTAAATTGAAAACCCTAACCTAATTAAATTGAAAGCCCTAAA
1 CCTAATTAAATTGAAAACCCTAACCTAATTAAATTGAAAACCCTAAC
*
7536420 CCTAATTAAATTAAAAACCCTAACTCTAATTAAATTGAAAACCCTAA-
1 CCTAATTAAATTGAAAACCCTAAC-CTAATTAAATTGAAAACCCTAAC
*
7536467 TCTAATTAAATTGAAAACCCTAACCCTAATTAAATTGAAAACCCTAA-
1 CCTAATTAAATTGAAAACCCTAA-CCTAATTAAATTGAAAACCCTAAC
7536514 CCTAATTAAATTG
1 CCTAATTAAATTG
7536527 CTCTAACCCT
Statistics
Matches: 231, Mismatches: 13, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
46 21 0.09
47 166 0.72
48 44 0.19
ACGTcount: A:0.47, C:0.21, G:0.04, T:0.28
Consensus pattern (47 bp):
CCTAATTAAATTGAAAACCCTAACCTAATTAAATTGAAAACCCTAAC
Found at i:7536287 original size:24 final size:23
Alignment explanation
Indices: 7536229--7536526 Score: 481
Period size: 24 Copynumber: 12.7 Consensus size: 23
7536219 TAACCATTAA
7536229 TAACCTAATTAAATTGAAAACCC
1 TAACCTAATTAAATTGAAAACCC
7536252 TAACCTAATTAAATTGAAAACCC
1 TAACCTAATTAAATTGAAAACCC
*
7536275 TAACCCTAATTAAATTGAAAACTC
1 TAA-CCTAATTAAATTGAAAACCC
*
7536299 TAACCTAATTAAATTGAAAACTC
1 TAACCTAATTAAATTGAAAACCC
7536322 T-ACCTTAATTAAATTGAAAACCC
1 TAACC-TAATTAAATTGAAAACCC
7536345 TAAACCTAATTAAATTGAAAACCC
1 T-AACCTAATTAAATTGAAAACCC
7536369 TAACCCTAATTAAATTGAAAACCC
1 TAA-CCTAATTAAATTGAAAACCC
*
7536393 TAACCTAATTAAATTGAAAGCCC
1 TAACCTAATTAAATTGAAAACCC
*
7536416 TAAACCTAATTAAATTAAAAACCC
1 T-AACCTAATTAAATTGAAAACCC
7536440 TAACTCTAATTAAATTGAAAACCC
1 TAAC-CTAATTAAATTGAAAACCC
*
7536464 TAATCTAATTAAATTGAAAACCC
1 TAACCTAATTAAATTGAAAACCC
7536487 TAACCCTAATTAAATTGAAAACCC
1 TAA-CCTAATTAAATTGAAAACCC
7536511 TAACCTAATTAAATTG
1 TAACCTAATTAAATTG
7536527 CTCTAACCCT
Statistics
Matches: 259, Mismatches: 8, Indels: 16
0.92 0.03 0.06
Matches are distributed among these distances:
22 3 0.01
23 125 0.48
24 128 0.49
25 3 0.01
ACGTcount: A:0.47, C:0.21, G:0.04, T:0.28
Consensus pattern (23 bp):
TAACCTAATTAAATTGAAAACCC
Found at i:7536744 original size:116 final size:117
Alignment explanation
Indices: 7536539--7536754 Score: 380
Period size: 116 Copynumber: 1.9 Consensus size: 117
7536529 CTAACCCTTA
**
7536539 ACATTCACATAATGTTAGATTTGGAAAAATGTTTTTTCCTGGTACTAACAATTAATAATTTCATA
1 ACATTCACATAATGTTAGATTTGGAAAAATGTTTTTGACTGGTACTAACAATTAATAATTTCATA
*
7536604 TAATTTGATAATTTTACTAACCATTAATACAATTTTTTGAGTTATTAATTTT
66 TAATTTAATAATTTTACTAACCATTAATACAATTTTTTGAGTTATTAATTTT
* *
7536656 ACATTCACATAATGTTATATTTGGAAAAATG-TTTTGACTGGTACTAACAATTAATAATTTTATA
1 ACATTCACATAATGTTAGATTTGGAAAAATGTTTTTGACTGGTACTAACAATTAATAATTTCATA
7536720 TAATTTAATAATTTTACTAACCATTAATACAATTT
66 TAATTTAATAATTTTACTAACCATTAATACAATTT
7536755 ATCAATTACT
Statistics
Matches: 94, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
116 64 0.68
117 30 0.32
ACGTcount: A:0.38, C:0.10, G:0.08, T:0.44
Consensus pattern (117 bp):
ACATTCACATAATGTTAGATTTGGAAAAATGTTTTTGACTGGTACTAACAATTAATAATTTCATA
TAATTTAATAATTTTACTAACCATTAATACAATTTTTTGAGTTATTAATTTT
Found at i:7539763 original size:23 final size:22
Alignment explanation
Indices: 7539737--7539794 Score: 57
Period size: 22 Copynumber: 2.6 Consensus size: 22
7539727 TTAAATATGG
* *
7539737 ATTTGAGAGAATTTTGGAAGGAA
1 ATTTGAGAGAAATTTAG-AGGAA
7539760 ATTT-AGAGGAAATTTAGAGGAA
1 ATTTGAGA-GAAATTTAGAGGAA
7539782 A-TTGAGAGGAAAT
1 ATTTGAGA-GAAAT
7539795 ATGAAAGAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
21 2 0.06
22 18 0.58
23 11 0.35
ACGTcount: A:0.43, C:0.00, G:0.29, T:0.28
Consensus pattern (22 bp):
ATTTGAGAGAAATTTAGAGGAA
Found at i:7539769 original size:11 final size:11
Alignment explanation
Indices: 7539755--7539794 Score: 71
Period size: 11 Copynumber: 3.6 Consensus size: 11
7539745 GAATTTTGGA
7539755 AGGAAATTTAG
1 AGGAAATTTAG
7539766 AGGAAATTTAG
1 AGGAAATTTAG
*
7539777 AGGAAATTGAG
1 AGGAAATTTAG
7539788 AGGAAAT
1 AGGAAAT
7539795 ATGAAAGAGG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.30, T:0.23
Consensus pattern (11 bp):
AGGAAATTTAG
Found at i:7542709 original size:24 final size:23
Alignment explanation
Indices: 7542651--7542710 Score: 61
Period size: 24 Copynumber: 2.6 Consensus size: 23
7542641 GTAAGAAAAT
*
7542651 ATTATTATAATTTTTATTTTAATG
1 ATTATTAT-ATTTTAATTTTAATG
*
7542675 AATATTA-ATTTTAAGTTGTTAATG
1 ATTATTATATTTTAA-TT-TTAATG
7542699 -TTATTATATTTT
1 ATTATTATATTTT
7542711 TTTATTTTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
22 6 0.20
23 7 0.23
24 17 0.57
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (23 bp):
ATTATTATATTTTAATTTTAATG
Found at i:7544338 original size:13 final size:14
Alignment explanation
Indices: 7544314--7544343 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
7544304 TACAAAATAT
7544314 GTACATATATATAA
1 GTACATATATATAA
7544328 GTACA-ATATATAA
1 GTACATATATATAA
7544341 GTA
1 GTA
7544344 AATTTGAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.69
14 5 0.31
ACGTcount: A:0.50, C:0.07, G:0.10, T:0.33
Consensus pattern (14 bp):
GTACATATATATAA
Found at i:7544537 original size:18 final size:19
Alignment explanation
Indices: 7544525--7544571 Score: 53
Period size: 21 Copynumber: 2.5 Consensus size: 19
7544515 GAAAATGTAT
7544525 ATGTAT-TATAAAATATAA
1 ATGTATATATAAAATATAA
*
7544543 ATGTATATATATTACATATAA
1 ATGTATATATA--AAATATAA
7544564 A-GTATATA
1 ATGTATATA
7544572 CGTGTATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
18 6 0.24
19 4 0.16
20 7 0.28
21 8 0.32
ACGTcount: A:0.51, C:0.02, G:0.06, T:0.40
Consensus pattern (19 bp):
ATGTATATATAAAATATAA
Found at i:7548893 original size:27 final size:27
Alignment explanation
Indices: 7548863--7548920 Score: 100
Period size: 27 Copynumber: 2.1 Consensus size: 27
7548853 CTAACTGATT
7548863 GGCGACACCGATGGTGCCATTTCC-ATG
1 GGCGACACCGATGGTGCCA-TTCCAATG
7548890 GGCGACACCGATGGTGCCATTCCAATG
1 GGCGACACCGATGGTGCCATTCCAATG
7548917 GGCG
1 GGCG
7548921 GCACTAGTGG
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 4 0.13
27 26 0.87
ACGTcount: A:0.19, C:0.29, G:0.33, T:0.19
Consensus pattern (27 bp):
GGCGACACCGATGGTGCCATTCCAATG
Found at i:7548931 original size:27 final size:27
Alignment explanation
Indices: 7548863--7548934 Score: 85
Period size: 27 Copynumber: 2.7 Consensus size: 27
7548853 CTAACTGATT
*
7548863 GGCGACACCGATGGTGCCATTTCCATG
1 GGCGACACAGATGGTGCCATTTCCATG
*
7548890 GGCGACACCGATGGTGCCA-TTCCAATG
1 GGCGACACAGATGGTGCCATTTCC-ATG
*
7548917 GGCGGCACTAG-TGGTGCC
1 GGCGACAC-AGATGGTGCC
7548935 CATATAATGG
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
26 4 0.10
27 36 0.88
28 1 0.02
ACGTcount: A:0.18, C:0.29, G:0.33, T:0.19
Consensus pattern (27 bp):
GGCGACACAGATGGTGCCATTTCCATG
Found at i:7551407 original size:46 final size:46
Alignment explanation
Indices: 7551243--7551399 Score: 296
Period size: 46 Copynumber: 3.4 Consensus size: 46
7551233 TTACTACCGG
*
7551243 TACAGGAAGACAAGATCTGCTATCTTCGATCTCTTCCGCTGCCAAA
1 TACAGGAAGACAAGATCTGCTATCTTCGATCTCCTCCGCTGCCAAA
7551289 TACAGGAAGACAAGATCTGCTATCTTCGATCTCCTCCGCTGCCAAA
1 TACAGGAAGACAAGATCTGCTATCTTCGATCTCCTCCGCTGCCAAA
*
7551335 TACAGGAAGACAAGATCTGCTATCTTCGATCTCCTCTGCTGCCAAA
1 TACAGGAAGACAAGATCTGCTATCTTCGATCTCCTCCGCTGCCAAA
7551381 TACAGGAAGACAAGATCTG
1 TACAGGAAGACAAGATCTG
7551400 TTGTCTTCAA
Statistics
Matches: 109, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 109 1.00
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.24
Consensus pattern (46 bp):
TACAGGAAGACAAGATCTGCTATCTTCGATCTCCTCCGCTGCCAAA
Found at i:7551449 original size:43 final size:43
Alignment explanation
Indices: 7551401--7551538 Score: 131
Period size: 44 Copynumber: 3.2 Consensus size: 43
7551391 CAAGATCTGT
*
7551401 TGTCTTCAACCAGTTCCGCTACAACCGAGAGAGGCAAGGTTTG
1 TGTCTTCAACTAGTTCCGCTACAACCGAGAGAGGCAAGGTTTG
* * * * *
7551444 TGTCTTCGATCTACTTCACTG-T-CAA-TGTAG-GAAGGCAAGATCTG
1 TGTCTTC-AACTAGTTC-C-GCTACAACCG-AGAG-AGGCAAGGTTTG
*
7551488 TTGTCTTCAACTAGCTCCGCTACAACCGAGAGAGGCAAGGTTTG
1 -TGTCTTCAACTAGTTCCGCTACAACCGAGAGAGGCAAGGTTTG
7551532 TGTCTTC
1 TGTCTTC
7551539 GATCTGCTTC
Statistics
Matches: 73, Mismatches: 12, Indels: 20
0.70 0.11 0.19
Matches are distributed among these distances:
42 1 0.01
43 18 0.25
44 42 0.58
45 11 0.15
46 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (43 bp):
TGTCTTCAACTAGTTCCGCTACAACCGAGAGAGGCAAGGTTTG
Found at i:7551482 original size:44 final size:43
Alignment explanation
Indices: 7551432--7551570 Score: 113
Period size: 44 Copynumber: 3.2 Consensus size: 43
7551422 CAACCGAGAG
* *
7551432 AGGCAAGGTTTGTGTCTTCGATCTACTTCACTGTCAATGTAGGA
1 AGGCAAGGTTTGTGTCTTCGATCTACTTCGCTGTCAACG-AGGA
* * * * *
7551476 AGGCAAGATCTGTTGTCTTC-AACTAGCTCCGCT-ACAACCGA-GA
1 AGGCAAGGTTTG-TGTCTTCGATCTA-CTTCGCTGTCAA-CGAGGA
* * *
7551519 GAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTGAAGGCAGGA
1 -AGGCAAGGTTTGTGTCTTCGATCTACTTCGCTGTCAACG-AGGA
7551564 AGGCAAG
1 AGGCAAG
7551571 ATCTGTTGTC
Statistics
Matches: 72, Mismatches: 15, Indels: 16
0.70 0.15 0.16
Matches are distributed among these distances:
43 16 0.22
44 41 0.57
45 15 0.21
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (43 bp):
AGGCAAGGTTTGTGTCTTCGATCTACTTCGCTGTCAACGAGGA
Found at i:7551495 original size:45 final size:44
Alignment explanation
Indices: 7551246--7551583 Score: 126
Period size: 46 Copynumber: 7.5 Consensus size: 44
7551236 CTACCGGTAC
* * * *
7551246 AGGAAGACAAGATCTGCTATCTTCGATCT-CTTCCGCTGCCAAATAC-
1 AGGAAGGCAAGATCTGTTGTCTTCGATCTACTT-CGCTGTC--A-ACG
* * * * * *
7551292 AGGAAGACAAGATCTGCTATCTTCGATCTCCTCCGCTGCCAAATAC-
1 AGGAAGGCAAGATCTGTTGTCTTCGATCTACTTCGCTGTC--A-ACG
* * * * *
7551338 AGGAAGACAAGATCTGCTATCTTCGATCT-CCTCTGCTGCCAAATAC-
1 AGGAAGGCAAGATCTGTTGTCTTCGATCTACTTC-GCTGTC--A-ACG
* * * * *
7551384 AGGAAGACAAGATCTGTTGTCTTC-AACCAGTTCCGCT-ACAACCG
1 AGGAAGGCAAGATCTGTTGTCTTCGATCTACTT-CGCTGTCAA-CG
* * * *
7551428 A-GAGAGGCAAGGTTTG-TGTCTTCGATCTACTTCACTGTCAATG
1 AGGA-AGGCAAGATCTGTTGTCTTCGATCTACTTCGCTGTCAACG
* * *
7551471 TAGGAAGGCAAGATCTGTTGTCTTC-AACTAGCTCCGCT-ACAACCG
1 -AGGAAGGCAAGATCTGTTGTCTTCGATCTA-CTTCGCTGTCAA-CG
* * * * *
7551516 A-GAGAGGCAAGGTTTG-TGTCTTCGATCTGCTTCGCTGTGAAGG
1 AGGA-AGGCAAGATCTGTTGTCTTCGATCTACTTCGCTGTCAACG
7551559 CAGGAAGGCAAGATCTGTTGTCTTC
1 -AGGAAGGCAAGATCTGTTGTCTTC
7551584 AACCAACTCT
Statistics
Matches: 236, Mismatches: 36, Indels: 41
0.75 0.12 0.13
Matches are distributed among these distances:
42 1 0.00
43 31 0.13
44 63 0.27
45 29 0.12
46 109 0.46
47 3 0.01
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (44 bp):
AGGAAGGCAAGATCTGTTGTCTTCGATCTACTTCGCTGTCAACG
Found at i:7551786 original size:173 final size:173
Alignment explanation
Indices: 7551383--7552461 Score: 1396
Period size: 173 Copynumber: 6.2 Consensus size: 173
7551373 CTGCCAAATA
* * * *
7551383 CAGGAAGACAAGATCTGTTGTCTTCAACCAGTTCCGCTACAACCGAGAGAGGCAAGGTTTGTGTC
1 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTAAAACCGAGAGAGGCAAGGTTTGT-T-
* * * * * * * * * * *
7551448 TTCGATCTACTTCACTGTCAATGTAGGAAGGCAAGATCTGTTGTCTTCAACTAGCTCCGCTACAA
64 TTTGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGTTATCTTTAACCAGCTCCACTGCAA
* * *
7551513 CCGAGAGAGGCAAGG-TTTGTGTCTTCGATCTGCTTCGCTGTGAAGG
129 CCGATAGAGGCAAGGCTTTGT-T-TTCGATCTGCTTCGCTGTTAACG
* *
7551559 CAGGAAGGCAAGATCTGTTGTCTTCAACCAACTCTACTAAAACCGAGAGAGGCAAGGTTTGTTTT
1 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTAAAACCGAGAGAGGCAAGGTTTGTTTT
* * *
7551624 TGGTCTGCTTCACTGTTAACGCAGGAAGGCAATATCTGTTATCTTTAACCAGCTCCACTGCAACC
66 TGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGTTATCTTTAACCAGCTCCACTGCAACC
* * *
7551689 GATTGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCCGTTAATG
131 GATAGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACG
* * * * ** *
7551732 TAGAAAGGCAAAATCTGTTATCTTCAACCAGCTCCACTGCAACTGATG-GAGGCAAGGTTTTGTT
1 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTAAAACCGA-GAGAGGCAAGG-TTTGTT
* * *
7551796 TTCGATCTGCTTCGCTGTCAACGCAGG-AGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
64 TTTGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGTTATCTTTAACCAGCTCCACTGCAA
* * * * *
7551860 CCGACAGAGGCAAAGCTTCGTTTTCGATCTGCTTCGCTGTCAAAG
129 CCGATAGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACG
* * *
7551905 CAGGAAGGCAAAATCTGTTGTCTTCAACCAGCTCCACTAAAATCGAGAGAGACAAGGTTTGTTTT
1 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTAAAACCGAGAGAGGCAAGGTTTGTTTT
*
7551970 TGGTCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGTTATCTTTAACCAGCTCCACTGCAACC
66 TGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGTTATCTTTAACCAGCTCCACTGCAACC
* * * *
7552035 GATGGAGACAAGGCTTTGTTTTCGATCTGCTTCGCTGTCAAGG
131 GATAGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACG
7552078 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTAAAACCGAGAGAGGCAAGGTTTGTTTT
1 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTAAAACCGAGAGAGGCAAGGTTTGTTTT
*
7552143 TGGTCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGTTATCTTTAACCAGCTCCACTGCAACC
66 TGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGTTATCTTTAACCAGCTCCACTGCAACC
* * * * *
7552208 GATGGAGGCAAGGCTTCGTTTTCGATTTGCTTCACTATTAACG
131 GATAGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACG
* * * * ** *
7552251 CAGGAAGGCAAGATCTGCTATCTTTAACCAGTTCCACTGCAACCGATG-GAGGAAAGGTTTCGTT
1 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTAAAACCGA-GAGAGGCAAGGTTT-GTT
* * * **
7552315 TTTGATCTGCTTCGCTGTTAACGCAGGACGGCAAGATCTGCTCTCTTTAACCAGCTCCACTAAAA
64 TTTGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGTTATCTTTAACCAGCTCCACTGCAA
* *
7552380 CCGAGAGAGGCAAGG-TTTGGTTTT-GGTCTGCTTCGCTGTTAACG
129 CCGATAGAGGCAAGGCTTT-GTTTTCGATCTGCTTCGCTGTTAACG
* *
7552424 CAGGAAGGCAAGATCTGTTATCTTTAACCAGCTCCACT
1 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACT
7552462 GTAACCTCGG
Statistics
Matches: 800, Mismatches: 95, Indels: 19
0.88 0.10 0.02
Matches are distributed among these distances:
172 31 0.04
173 529 0.66
174 178 0.22
175 6 0.01
176 56 0.07
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.28
Consensus pattern (173 bp):
CAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTAAAACCGAGAGAGGCAAGGTTTGTTTT
TGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGTTATCTTTAACCAGCTCCACTGCAACC
GATAGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACG
Found at i:7551936 original size:260 final size:259
Alignment explanation
Indices: 7551383--7552467 Score: 1429
Period size: 260 Copynumber: 4.2 Consensus size: 259
7551373 CTGCCAAATA
* * * * * *
7551383 CAGGAAGACAAGATCTGTTGTCTTCAACCAGTTCCGCTACAACCGAGAGAGGCAAGGTTTGTGTC
1 CAGGAAGGCAAGATCTGTTATCTTTAACCAGCTCCACTGCAACCGAGAGAGGCAAGGTTTGT-T-
* * * * * * * *
7551448 TTCGATCTACTTCACTGTCAATGTAGGAAGGCAAGATCTGTTGTCTTCAACTAGCTCCGCTACAA
64 TTCGATCTGCTTCACTGTTAACGCAGGAAGGCAAGATCTGTTATCTTCAACCAGCTCCACTGCAA
* * * *
7551513 CCGA-GAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTGAAGGCAGGAAGGCAAGATCTGT
129 CCGATG-GAGGCAAGGTTT-TGTTTTCGATCTGCTTCGCTGTCAACGCAGGAAGGCAAGATCTGC
* * *
7551577 TGTCTTCAACCAACTCTACTAAAACCGAGAGAGGCAAGGTTTGTTTTTGGTCTGCTTCACTGTTA
192 TGTCTTCAACCAGCTCCACTAAAACCGAGAGAGGCAAGGTTTGTTTTTGGTCTGCTTCGCTGTTA
7551642 ACG
257 ACG
* **
7551645 CAGGAAGGCAATATCTGTTATCTTTAACCAGCTCCACTGCAACCGATTGAGGCAAGGCTTTGTTT
1 CAGGAAGGCAAGATCTGTTATCTTTAACCAGCTCCACTGCAACCGAGAGAGGCAAGG-TTTGTTT
* * * * * *
7551710 TCGATCTGCTTCGCCGTTAATGTAGAAAGGCAAAATCTGTTATCTTCAACCAGCTCCACTGCAAC
65 TCGATCTGCTTCACTGTTAACGCAGGAAGGCAAGATCTGTTATCTTCAACCAGCTCCACTGCAAC
* *
7551775 TGATGGAGGCAAGGTTTTGTTTTCGATCTGCTTCGCTGTCAACGCAGG-AGGCAAGATCTGCTAT
130 CGATGGAGGCAAGGTTTTGTTTTCGATCTGCTTCGCTGTCAACGCAGGAAGGCAAGATCTGCTGT
* ** * * * * * * *
7551839 CTTTAACCAGCTCCACTGCAACCGACAGAGGCAAAGCTTCGTTTTCGATCTGCTTCGCTGTCAAA
195 CTTCAACCAGCTCCACTAAAACCGAGAGAGGC-AAGGTTTGTTTTTGGTCTGCTTCGCTGTTAAC
7551904 G
259 G
* * * ** * *
7551905 CAGGAAGGCAAAATCTGTTGTCTTCAACCAGCTCCACTAAAATCGAGAGAGACAAGGTTTGTTTT
1 CAGGAAGGCAAGATCTGTTATCTTTAACCAGCTCCACTGCAACCGAGAGAGGCAAGGTTTGTTTT
* * * *
7551970 TGGTCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGTTATCTTTAACCAGCTCCACTGCAACC
66 CGATCTGCTTCACTGTTAACGCAGGAAGGCAAGATCTGTTATCTTCAACCAGCTCCACTGCAACC
* * * *
7552035 GATGGAGACAAGGCTTTGTTTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATCTGTTGTC
131 GATGGAGGCAAGGTTTTGTTTTCGATCTGCTTCGCTGTCAACGCAGGAAGGCAAGATCTGCTGTC
7552100 TTCAACCAGCTCCACTAAAACCGAGAGAGGCAAGGTTTGTTTTTGGTCTGCTTCGCTGTTAACG
196 TTCAACCAGCTCCACTAAAACCGAGAGAGGCAAGGTTTGTTTTTGGTCTGCTTCGCTGTTAACG
*
7552164 CAGGAAGGCAAGATCTGTTATCTTTAACCAGCTCCACTGCAACCGATG-GAGGCAAGGCTTCGTT
1 CAGGAAGGCAAGATCTGTTATCTTTAACCAGCTCCACTGCAACCGA-GAGAGGCAAGG-TTTGTT
* * * * *
7552228 TTCGATTTGCTTCACTATTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGTTCCACTGCAA
64 TTCGATCTGCTTCACTGTTAACGCAGGAAGGCAAGATCTGTTATCTTCAACCAGCTCCACTGCAA
* * * * * *
7552293 CCGATGGAGGAAAGGTTTCGTTTTTGATCTGCTTCGCTGTTAACGCAGGACGGCAAGATCTGCTC
129 CCGATGGAGGCAAGGTTTTGTTTTCGATCTGCTTCGCTGTCAACGCAGGAAGGCAAGATCTGCTG
* *
7552358 TCTTTAACCAGCTCCACTAAAACCGAGAGAGGCAAGGTTTGGTTTTGGTCTGCTTCGCTGTTAAC
194 TCTTCAACCAGCTCCACTAAAACCGAGAGAGGCAAGGTTTGTTTTTGGTCTGCTTCGCTGTTAAC
7552423 G
259 G
*
7552424 CAGGAAGGCAAGATCTGTTATCTTTAACCAGCTCCACTGTAACC
1 CAGGAAGGCAAGATCTGTTATCTTTAACCAGCTCCACTGCAACC
7552468 TCGGGGAGAT
Statistics
Matches: 718, Mismatches: 99, Indels: 14
0.86 0.12 0.02
Matches are distributed among these distances:
259 223 0.31
260 370 0.52
261 70 0.10
262 50 0.07
263 5 0.01
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.28
Consensus pattern (259 bp):
CAGGAAGGCAAGATCTGTTATCTTTAACCAGCTCCACTGCAACCGAGAGAGGCAAGGTTTGTTTT
CGATCTGCTTCACTGTTAACGCAGGAAGGCAAGATCTGTTATCTTCAACCAGCTCCACTGCAACC
GATGGAGGCAAGGTTTTGTTTTCGATCTGCTTCGCTGTCAACGCAGGAAGGCAAGATCTGCTGTC
TTCAACCAGCTCCACTAAAACCGAGAGAGGCAAGGTTTGTTTTTGGTCTGCTTCGCTGTTAACG
Found at i:7552547 original size:46 final size:45
Alignment explanation
Indices: 7552455--7552968 Score: 144
Period size: 44 Copynumber: 11.7 Consensus size: 45
7552445 CTTTAACCAG
* * *
7552455 CTCCACTGTAACCTCGGGGAGATAAGATCTGAAATTCTTCGGTCTA
1 CTCCACTGTAACCTCAGGGAGATAAGACCTGAAATTCTAC-GTCTA
*
7552501 CTCCACTGTAACCTCAGTGAGATAAGACCTG--A---TACGATCTA
1 CTCCACTGTAACCTCAGGGAGATAAGACCTGAAATTCTACG-TCTA
* * * * ** * * **
7552542 CTCTACTGTAACTTCAGAGAGATGAGATCCT-TTATTTTA-ATCCG
1 CTCCACTGTAACCTCAGGGAGATAAGA-CCTGAAATTCTACGTCTA
* * * * ** *
7552586 CTCCACTGTAACTTCAGGGAGACAGGA--T--AGTGTCTTGGATCTG
1 CTCCACTGTAACCTCAGGGAGATAAGACCTGAAAT-TCTACG-TCTA
* * ** *
7552629 CTCCGCTGTAATCTCAGGGAGATAAGATCTCTG-GCTTC-A-ATCTA
1 CTCCACTGTAACCTCAGGGAGATAAGA-C-CTGAAATTCTACGTCTA
* * * * **
7552673 CTCCACTATAACCTCAGAGAGATAAAATCTGAAATTCTTTGGTCTA
1 CTCCACTGTAACCTCAGGGAGATAAGACCTGAAATTC-TACGTCTA
* *
7552719 CTCCACTGTAACCTCAGGGAGATAAGACCTG--ATGCGA--TCTA
1 CTCCACTGTAACCTCAGGGAGATAAGACCTGAAATTCTACGTCTA
* * * * ** * * **
7552760 CTCTACTGTAACATCAGAGAGATGAGATCCT-TTATTTTA-ATCCG
1 CTCCACTGTAACCTCAGGGAGATAAGA-CCTGAAATTCTACGTCTA
* * * ** * ** *
7552804 CTCCACTGTAACTTCAAGGAGATAGGATAGTG-TATTGGA--TCTG
1 CTCCACTGTAACCTCAGGGAGATAAGA-CCTGAAATTCTACGTCTA
* * * * ** * *
7552847 CTCCGCTGTAATCTCAGAGAGATAAAATCTCTG-GCTTC-A-ATCTG
1 CTCCACTGTAACCTCAGGGAGATAAGA-C-CTGAAATTCTACGTCTA
* * *
7552891 CTCCACTGTAACCTCAAGGAGATAAGATCTGAAATTCTTCGGTCTA
1 CTCCACTGTAACCTCAGGGAGATAAGACCTGAAATTCTAC-GTCTA
*
7552937 CTCCACTGTAACCTCAAGGAGATAAGACCTGA
1 CTCCACTGTAACCTCAGGGAGATAAGACCTGA
7552969 TGCGATCTAC
Statistics
Matches: 345, Mismatches: 93, Indels: 60
0.69 0.19 0.12
Matches are distributed among these distances:
40 2 0.01
41 59 0.17
42 12 0.03
43 60 0.17
44 113 0.33
46 95 0.28
47 3 0.01
48 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (45 bp):
CTCCACTGTAACCTCAGGGAGATAAGACCTGAAATTCTACGTCTA
Found at i:7552720 original size:218 final size:217
Alignment explanation
Indices: 7552455--7553133 Score: 1105
Period size: 218 Copynumber: 3.1 Consensus size: 217
7552445 CTTTAACCAG
* *
7552455 CTCCACTGTAACCTCGGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGTG
1 CTCCACTGTAACCTCAGAGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAG-G
*
7552520 AGATAAGACCTGATACGATCTACTCTACTGTAACTTCAGAGAGATGAGATCCTTTATTTTAATCC
65 AGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATGAGATCCTTTATTTTAATCC
*
7552585 GCTCCACTGTAACTTCAGGGAGACAGGATAGTGTCTTGGATCTGCTCCGCTGTAATCTCAGGGAG
130 GCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTGGATCTGCTCCGCTGTAATCTCAGGGAG
7552650 ATAAGATCTCTGGCTTCAATCTA
195 ATAAGATCTCTGGCTTCAATCTA
* * *
7552673 CTCCACTATAACCTCAGAGAGATAAAATCTGAAATTCTTTGGTCTACTCCACTGTAACCTCAGGG
1 CTCCACTGTAACCTCAGAGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCA-GG
*
7552738 AGATAAGACCTGATGCGATCTACTCTACTGTAACATCAGAGAGATGAGATCCTTTATTTTAATCC
65 AGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATGAGATCCTTTATTTTAATCC
* * *
7552803 GCTCCACTGTAACTTCAAGGAGATAGGATAGTGTATTGGATCTGCTCCGCTGTAATCTCAGAGAG
130 GCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTGGATCTGCTCCGCTGTAATCTCAGGGAG
* *
7552868 ATAAAATCTCTGGCTTCAATCTG
195 ATAAGATCTCTGGCTTCAATCTA
7552891 CTCCACTGTAACCTCA-AGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAAG
1 CTCCACTGTAACCTCAGA-GAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTC-AG
*
7552955 GAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATGGGATCCTTTATTTTAATC
64 GAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATGAGATCCTTTATTTTAATC
*
7553020 CGCTCCACTGTAACTTCAGAGAGATAGGATAGTGTCTTGGATCTGCTCCGCTGTAATCTCAGGGA
129 CGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTGGATCTGCTCCGCTGTAATCTCAGGGA
* * *
7553085 GATAAGA--TCT-GATACGATCTA
194 GATAAGATCTCTGGCTTCAATCTA
* * *
7553106 CTCTACTGTAACTTCAGAGATATAAGAT
1 CTCCACTGTAACCTCAGAGAGATAAGAT
7553134 TCTTTATTTT
Statistics
Matches: 427, Mismatches: 30, Indels: 11
0.91 0.06 0.02
Matches are distributed among these distances:
215 30 0.07
216 4 0.01
217 1 0.00
218 390 0.91
219 2 0.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (217 bp):
CTCCACTGTAACCTCAGAGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGA
GATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATGAGATCCTTTATTTTAATCCG
CTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTGGATCTGCTCCGCTGTAATCTCAGGGAGA
TAAGATCTCTGGCTTCAATCTA
Done.