Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62811768
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 736185 characters in sequence are not A, C, G, or T
File 28 of 211
Found at i:7553112 original size:128 final size:129
Alignment explanation
Indices: 7552937--7553227 Score: 390
Period size: 128 Copynumber: 2.3 Consensus size: 129
7552927 CTTCGGTCTA
* * * * * *
7552937 CTCCACTGTAACCTCAAGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATG
1 CTCCGCTGTAATCTCAGGGAGATAAGATCTGATACGATCTACTCTACTGTAACTTCAGAGAGATA
* * ** **
7553002 GGATCCTTTATTTTAATCCGCTCCACTGTAA-CTTCAGAGAGATAGGA-TA-GTGTCTTGGATCT
66 AGATCCTTTATTTTAATCCACTCCACTGTAATC-TCAGAGAGATAGGATTACCAG-CTTCAATCT
7553064 G
129 G
*
7553065 CTCCGCTGTAATCTCAGGGAGATAAGATCTGATACGATCTACTCTACTGTAACTTCAGAGATATA
1 CTCCGCTGTAATCTCAGGGAGATAAGATCTGATACGATCTACTCTACTGTAACTTCAGAGAGATA
* * *
7553130 AGATTCTTTATTTTAATCCACTCCATTGTAATCTCAGGGAGATAGGATTACCAGCTTCAATCTG
66 AGATCCTTTATTTTAATCCACTCCACTGTAATCTCAGAGAGATAGGATTACCAGCTTCAATCTG
*
7553194 CTCCGCTGTAATTTCAGGGAGATAAGATCTGATA
1 CTCCGCTGTAATCTCAGGGAGATAAGATCTGATA
7553228 TTCTTCGGTC
Statistics
Matches: 143, Mismatches: 17, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
128 98 0.69
129 44 0.31
130 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.31
Consensus pattern (129 bp):
CTCCGCTGTAATCTCAGGGAGATAAGATCTGATACGATCTACTCTACTGTAACTTCAGAGAGATA
AGATCCTTTATTTTAATCCACTCCACTGTAATCTCAGAGAGATAGGATTACCAGCTTCAATCTG
Found at i:7554439 original size:7 final size:7
Alignment explanation
Indices: 7554421--7554465 Score: 60
Period size: 7 Copynumber: 6.9 Consensus size: 7
7554411 TTAGCCTCTC
7554421 CATTTTT
1 CATTTTT
7554428 C-TTTTT
1 CATTTTT
7554434 CATTTTT
1 CATTTTT
7554441 CATTTTT
1 CATTTTT
*
7554448 CA-TTCT
1 CATTTTT
7554454 CATTTTT
1 CATTTTT
7554461 C-TTTT
1 CATTTT
7554466 ATTTTTTTTG
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
6 15 0.44
7 19 0.56
ACGTcount: A:0.11, C:0.18, G:0.00, T:0.71
Consensus pattern (7 bp):
CATTTTT
Found at i:7554439 original size:13 final size:14
Alignment explanation
Indices: 7554421--7554465 Score: 60
Period size: 13 Copynumber: 3.4 Consensus size: 14
7554411 TTAGCCTCTC
7554421 CATTTTTC-TTTTT
1 CATTTTTCATTTTT
7554434 CATTTTTCATTTTT
1 CATTTTTCATTTTT
*
7554448 CA-TTCTCATTTTT
1 CATTTTTCATTTTT
7554461 C-TTTT
1 CATTTT
7554466 ATTTTTTTTG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 21 0.75
14 7 0.25
ACGTcount: A:0.11, C:0.18, G:0.00, T:0.71
Consensus pattern (14 bp):
CATTTTTCATTTTT
Found at i:7554444 original size:20 final size:20
Alignment explanation
Indices: 7554421--7554465 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
7554411 TTAGCCTCTC
* *
7554421 CATTTTTCTTTTTCATTTTT
1 CATTTTTCATTCTCATTTTT
7554441 CATTTTTCATTCTCATTTTT
1 CATTTTTCATTCTCATTTTT
7554461 C-TTTT
1 CATTTT
7554466 ATTTTTTTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 4 0.17
20 19 0.83
ACGTcount: A:0.11, C:0.18, G:0.00, T:0.71
Consensus pattern (20 bp):
CATTTTTCATTCTCATTTTT
Found at i:7555465 original size:6 final size:6
Alignment explanation
Indices: 7555451--7555513 Score: 58
Period size: 6 Copynumber: 10.7 Consensus size: 6
7555441 TTCTTCTTTT
* * * *
7555451 TTTTTA TTTTGA TTTTTGA TTTT-- TTTTCA TTTTCA TTTTCA TTTTGA
1 TTTTGA TTTTGA -TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA
*
7555498 CTTTGA TTTTGA TTTT
1 TTTTGA TTTTGA TTTT
7555514 TCTTTTTTTC
Statistics
Matches: 50, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
4 4 0.08
6 40 0.80
7 6 0.12
ACGTcount: A:0.14, C:0.06, G:0.08, T:0.71
Consensus pattern (6 bp):
TTTTGA
Found at i:7555494 original size:22 final size:23
Alignment explanation
Indices: 7555447--7555522 Score: 66
Period size: 23 Copynumber: 3.3 Consensus size: 23
7555437 TTCTTTCTTC
* * *
7555447 TTTTTTTTTATTTTGATTTTTGA
1 TTTTTTTTCATTTTCATTTTTCA
7555470 TTTTTTTTCATTTTCA-TTTTCA
1 TTTTTTTTCATTTTCATTTTTCA
* * *
7555492 TTTTGACTTTGATTTTGATTTTTC-
1 TTTT--TTTTCATTTTCATTTTTCA
7555516 TTTTTTT
1 TTTTTTT
7555523 CTTCCCTTTT
Statistics
Matches: 43, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
22 11 0.26
23 14 0.33
24 13 0.30
25 5 0.12
ACGTcount: A:0.12, C:0.07, G:0.07, T:0.75
Consensus pattern (23 bp):
TTTTTTTTCATTTTCATTTTTCA
Found at i:7558951 original size:26 final size:27
Alignment explanation
Indices: 7558922--7558994 Score: 73
Period size: 26 Copynumber: 2.9 Consensus size: 27
7558912 CATACATACG
7558922 TTTTATAATACATATACATTTT-TTAA
1 TTTTATAATACATATACATTTTCTTAA
* *
7558948 TTTTATAATTC--ATACATTTTCTTTA
1 TTTTATAATACATATACATTTTCTTAA
* * *
7558973 TATTAT-ATACATACAGATTTTC
1 TTTTATAATACATATACATTTTC
7558995 ACACACACAC
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
24 12 0.32
25 8 0.21
26 18 0.47
ACGTcount: A:0.34, C:0.11, G:0.01, T:0.53
Consensus pattern (27 bp):
TTTTATAATACATATACATTTTCTTAA
Found at i:7558985 original size:24 final size:24
Alignment explanation
Indices: 7558924--7558987 Score: 67
Period size: 24 Copynumber: 2.6 Consensus size: 24
7558914 TACATACGTT
*
7558924 TTATAATACATATACATTTTTTAATT
1 TTATAATAC--ATACATTTTTTAATA
* *
7558950 TTATAATTCATACATTTTCTTTATA
1 TTATAATACATACATTTT-TTAATA
7558975 TTAT-ATACATACA
1 TTATAATACATACA
7558988 GATTTTCACA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
24 17 0.52
25 8 0.24
26 8 0.24
ACGTcount: A:0.38, C:0.11, G:0.00, T:0.52
Consensus pattern (24 bp):
TTATAATACATACATTTTTTAATA
Found at i:7562895 original size:20 final size:20
Alignment explanation
Indices: 7562870--7562907 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
7562860 TTCACCTCAT
7562870 GCATCGCATCATATGCATCA
1 GCATCGCATCATATGCATCA
7562890 GCATCGCATCATATGCAT
1 GCATCGCATCATATGCAT
7562908 TAAAGACCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (20 bp):
GCATCGCATCATATGCATCA
Found at i:7571066 original size:50 final size:50
Alignment explanation
Indices: 7571012--7571186 Score: 172
Period size: 50 Copynumber: 3.5 Consensus size: 50
7571002 GCAGCGGAAT
*
7571012 AGATTGAAGCTACGACAACGGATCTGGTTTCCCTGATATTGCAATTAAAA
1 AGATTGAAGCTACGACAGCGGATCTGGTTTCCCTGATATTGCAATTAAAA
* * * * *** * * * * ** *
7571062 AGATTGAAGCCACAACGGTGGATCTTACTT-CCTTAGCAGTGCAGTGGAAC
1 AGATTGAAGCTACGACAGCGGATCTGGTTTCCCTGA-TATTGCAATTAAAA
7571112 AGATTGAAGCTACGACAGCGGATCTGGTTTCCCTGATATTGCAATTAAAA
1 AGATTGAAGCTACGACAGCGGATCTGGTTTCCCTGATATTGCAATTAAAA
* * *
7571162 AGATTGAAGCCACAACGGCGGATCT
1 AGATTGAAGCTACGACAGCGGATCT
7571187 TACGTCCTTA
Statistics
Matches: 91, Mismatches: 32, Indels: 4
0.72 0.25 0.03
Matches are distributed among these distances:
49 4 0.04
50 83 0.91
51 4 0.04
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.25
Consensus pattern (50 bp):
AGATTGAAGCTACGACAGCGGATCTGGTTTCCCTGATATTGCAATTAAAA
Found at i:7571218 original size:50 final size:50
Alignment explanation
Indices: 7570965--7571270 Score: 161
Period size: 50 Copynumber: 6.1 Consensus size: 50
7570955 AGTAAAAAGG
* * * * *
7570965 TTGAAGCCACAACGGCAGATCTTACTTCCTTACCAGTGCAGCGGAATAGA
1 TTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGCAGTGGAACAAA
* * ** *** * * * * * *
7571015 TTGAAGCTACGACAACGGATCTGGTTTCCCT-GATATTGCAAT-TAAAAAGA
1 TTGAAGCCACAACGGCGGATCTTACTTCCTTAG-CAGTGCAGTGGAACAA-A
* *
7571065 TTGAAGCCACAACGGTGGATCTTACTTCCTTAGCAGTGCAGTGGAACAGA
1 TTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGCAGTGGAACAAA
* * * *** * * * * * *
7571115 TTGAAGCTACGACAGCGGATCTGGTTTCCCT-GATATTGCAAT-TAAAAAGA
1 TTGAAGCCACAACGGCGGATCTTACTTCCTTAG-CAGTGCAGTGGAACAA-A
* *
7571165 TTGAAGCCACAACGGCGGATCTTACGTCCTTAGCGGTGCAGTGGAACAAA
1 TTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGCAGTGGAACAAA
* * *** * * * *
7571215 TTGAAGCTACGACGGCGGATCTGGTTTCCCTAACATTGCAGTTGAACAAA
1 TTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGCAGTGGAACAAA
7571265 TTGAAG
1 TTGAAG
7571271 ATTACAGATC
Statistics
Matches: 177, Mismatches: 71, Indels: 16
0.67 0.27 0.06
Matches are distributed among these distances:
49 7 0.04
50 161 0.91
51 9 0.05
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25
Consensus pattern (50 bp):
TTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGCAGTGGAACAAA
Found at i:7571270 original size:100 final size:100
Alignment explanation
Indices: 7570957--7571254 Score: 479
Period size: 100 Copynumber: 3.0 Consensus size: 100
7570947 GGTTGAAAAG
* * * * *
7570957 TAAAAAGGTTGAAGCCACAACGGCAGATCTTACTTCCTTACCAGTGCAGCGGAATAGATTGAAGC
1 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGCAGTGGAACAGATTGAAGC
*
7571022 TACGACAACGGATCTGGTTTCCCTGATATTGCAAT
66 TACGACAGCGGATCTGGTTTCCCTGATATTGCAAT
*
7571057 TAAAAAGATTGAAGCCACAACGGTGGATCTTACTTCCTTAGCAGTGCAGTGGAACAGATTGAAGC
1 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGCAGTGGAACAGATTGAAGC
7571122 TACGACAGCGGATCTGGTTTCCCTGATATTGCAAT
66 TACGACAGCGGATCTGGTTTCCCTGATATTGCAAT
* * *
7571157 TAAAAAGATTGAAGCCACAACGGCGGATCTTACGTCCTTAGCGGTGCAGTGGAACAAATTGAAGC
1 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGCAGTGGAACAGATTGAAGC
* * *
7571222 TACGACGGCGGATCTGGTTTCCCTAACATTGCA
66 TACGACAGCGGATCTGGTTTCCCTGATATTGCA
7571255 GTTGAACAAA
Statistics
Matches: 184, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
100 184 1.00
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.24
Consensus pattern (100 bp):
TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGCAGTGGAACAGATTGAAGC
TACGACAGCGGATCTGGTTTCCCTGATATTGCAAT
Found at i:7573030 original size:25 final size:27
Alignment explanation
Indices: 7572999--7573070 Score: 73
Period size: 25 Copynumber: 2.9 Consensus size: 27
7572989 CATACATACG
7572999 TTTTATAATACATATACA-TTT-TTTA
1 TTTTATAATACATATACATTTTCTTTA
*
7573024 TTTTATAATTC--ATACATTTTCTTTA
1 TTTTATAATACATATACATTTTCTTTA
* * *
7573049 TATTAT-ATACATACAGATTTTC
1 TTTTATAATACATATACATTTTC
7573071 ACACACACAT
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
23 5 0.13
24 6 0.16
25 19 0.50
26 8 0.21
ACGTcount: A:0.33, C:0.11, G:0.01, T:0.54
Consensus pattern (27 bp):
TTTTATAATACATATACATTTTCTTTA
Found at i:7573119 original size:13 final size:13
Alignment explanation
Indices: 7573101--7573125 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7573091 TCTCATAGTT
7573101 TATTTATATATTA
1 TATTTATATATTA
7573114 TATTTATATATT
1 TATTTATATATT
7573126 TTGTTCTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (13 bp):
TATTTATATATTA
Found at i:7575258 original size:49 final size:49
Alignment explanation
Indices: 7575198--7575313 Score: 124
Period size: 49 Copynumber: 2.4 Consensus size: 49
7575188 ATGAAACTCG
* * * * ** * *
7575198 AACCCGAGACCGTATAATCACTGTCAATTGGGGGCCTGAGTTATATTTG
1 AACCCGTGACCGTATAACCACTGTCAACTGGGAGCCCAAGTTATACTTC
* * * *
7575247 AACCTGTGACCGCATAACCATTGTTAACTGGGAGCCCAAGTTATACTTC
1 AACCCGTGACCGTATAACCACTGTCAACTGGGAGCCCAAGTTATACTTC
7575296 AACCCGTGACCGTATAAC
1 AACCCGTGACCGTATAAC
7575314 TATCGTGAAA
Statistics
Matches: 53, Mismatches: 14, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
49 53 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (49 bp):
AACCCGTGACCGTATAACCACTGTCAACTGGGAGCCCAAGTTATACTTC
Found at i:7575328 original size:49 final size:49
Alignment explanation
Indices: 7575236--7575337 Score: 114
Period size: 49 Copynumber: 2.1 Consensus size: 49
7575226 TGGGGGCCTG
* * * * * *
7575236 AGTTATATTTGAACCTGTGACCGCATAACCATTGTTAACTGGGAGCCCA
1 AGTTATACTTCAACCCGTGACCGCATAACCATCGTGAAATGGGAGCCCA
* * * *
7575285 AGTTATACTTCAACCCGTGACCGTATAACTATCGTGAAATGGGATCCCG
1 AGTTATACTTCAACCCGTGACCGCATAACCATCGTGAAATGGGAGCCCA
7575334 AGTT
1 AGTT
7575338 GCAATGTGAC
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
49 43 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (49 bp):
AGTTATACTTCAACCCGTGACCGCATAACCATCGTGAAATGGGAGCCCA
Found at i:7577539 original size:38 final size:38
Alignment explanation
Indices: 7577457--7577568 Score: 100
Period size: 41 Copynumber: 2.9 Consensus size: 38
7577447 CATCGGATAG
* * * *
7577457 TTCGAAGCAAAGTTGATATCCAGTTTCTCATCG-GCCTA
1 TTCGAAGTAAAG-TGATACCCAGTATCTCATCGAACCTA
** *
7577495 GCCGAAGTAAAGTGATACCCAGTATCTCATCGAATCTA
1 TTCGAAGTAAAGTGATACCCAGTATCTCATCGAACCTA
* *
7577533 TTCGAAGTAAAATAGTGACACCCAGTGTCTCATCGA
1 TTCGAAGT--AA-AGTGATACCCAGTATCTCATCGA
7577569 CTCGAGGTCG
Statistics
Matches: 59, Mismatches: 11, Indels: 5
0.79 0.15 0.07
Matches are distributed among these distances:
37 18 0.31
38 18 0.31
40 2 0.03
41 21 0.36
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (38 bp):
TTCGAAGTAAAGTGATACCCAGTATCTCATCGAACCTA
Found at i:7578448 original size:9 final size:9
Alignment explanation
Indices: 7578436--7578475 Score: 55
Period size: 9 Copynumber: 4.6 Consensus size: 9
7578426 CTATTTCTCC
7578436 CTTTTCTTT
1 CTTTTCTTT
7578445 CTTTTC-TT
1 CTTTTCTTT
* *
7578453 CTTTCCCTT
1 CTTTTCTTT
7578462 CTTTTCTTT
1 CTTTTCTTT
7578471 CTTTT
1 CTTTT
7578476 TCTCCATGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
8 7 0.26
9 20 0.74
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (9 bp):
CTTTTCTTT
Found at i:7580303 original size:23 final size:23
Alignment explanation
Indices: 7580230--7580305 Score: 116
Period size: 23 Copynumber: 3.3 Consensus size: 23
7580220 AGTGTTATTG
7580230 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* * *
7580253 TTCAATGGTAGCTACGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
7580276 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
7580299 CTCAGTG
1 ATCAGTG
7580306 TGGCACTTAT
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.30
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:7601559 original size:11 final size:11
Alignment explanation
Indices: 7601539--7601576 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
7601529 GGCCCAGCCC
7601539 ATATTAAATAT
1 ATATTAAATAT
*
7601550 ATATTTAATAT
1 ATATTAAATAT
*
7601561 ATATAAAATAT
1 ATATTAAATAT
7601572 ATATT
1 ATATT
7601577 TGATTAAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (11 bp):
ATATTAAATAT
Found at i:7601892 original size:8 final size:8
Alignment explanation
Indices: 7601866--7601935 Score: 76
Period size: 8 Copynumber: 9.0 Consensus size: 8
7601856 AATTATAAAA
7601866 TATATTAT
1 TATATTAT
*
7601874 TATTGTTAT
1 TA-TATTAT
7601883 TATATTAT
1 TATATTAT
7601891 TATATTAT
1 TATATTAT
7601899 TATATTA-
1 TATATTAT
7601906 TA-A--AT
1 TATATTAT
*
7601911 TAAATTGAT
1 TATATT-AT
7601920 TATATTAT
1 TATATTAT
7601928 TATATTAT
1 TATATTAT
7601936 GAAATAAATT
Statistics
Matches: 53, Mismatches: 3, Indels: 12
0.78 0.04 0.18
Matches are distributed among these distances:
4 1 0.02
5 2 0.04
6 2 0.04
7 2 0.04
8 32 0.60
9 14 0.26
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.59
Consensus pattern (8 bp):
TATATTAT
Found at i:7601927 original size:29 final size:29
Alignment explanation
Indices: 7601881--7601946 Score: 100
Period size: 29 Copynumber: 2.3 Consensus size: 29
7601871 TATTATTGTT
*
7601881 ATTATATTATTATATTATTATATTAT-AA
1 ATTAAATTATTATATTATTATATTATGAA
7601909 ATTAAATTGATTATATTATTATATTATGAA
1 ATTAAATT-ATTATATTATTATATTATGAA
7601939 A-TAAATTA
1 ATTAAATTA
7601947 AGAAAAGACA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
28 8 0.23
29 24 0.69
30 3 0.09
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (29 bp):
ATTAAATTATTATATTATTATATTATGAA
Found at i:7602075 original size:31 final size:32
Alignment explanation
Indices: 7602004--7602076 Score: 87
Period size: 34 Copynumber: 2.2 Consensus size: 32
7601994 AAATGAGTAC
* *
7602004 ATTTGTATTATTTATATATAGTTAGTAAAAAAG
1 ATTTTTATTATTTATATATAATTAGT-AAAAAG
7602037 ATATTTTATTATTTAT-TATTAATTAGT-AAAAG
1 AT-TTTTATTATTTATATA-TAATTAGTAAAAAG
7602069 ATTTTTAT
1 ATTTTTAT
7602077 ATGATAAATA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
31 6 0.17
32 7 0.19
33 4 0.11
34 19 0.53
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (32 bp):
ATTTTTATTATTTATATATAATTAGTAAAAAG
Found at i:7602396 original size:10 final size:10
Alignment explanation
Indices: 7602378--7602426 Score: 55
Period size: 10 Copynumber: 4.9 Consensus size: 10
7602368 AAAGTAAAAT
7602378 AAAAG-AACA
1 AAAAGAAACA
7602387 AAAAGAAACA
1 AAAAGAAACA
*
7602397 AAAAGAAATA
1 AAAAGAAACA
*
7602407 GAAAGAAACA
1 AAAAGAAACA
*
7602417 GAATAGAAAC
1 -AAAAGAAAC
7602427 GAAACACGGA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
9 5 0.15
10 21 0.64
11 7 0.21
ACGTcount: A:0.73, C:0.08, G:0.14, T:0.04
Consensus pattern (10 bp):
AAAAGAAACA
Found at i:7602419 original size:16 final size:16
Alignment explanation
Indices: 7602374--7602432 Score: 56
Period size: 16 Copynumber: 3.9 Consensus size: 16
7602364 AACTAAAGTA
7602374 AAATA-AAAG-AACA-
1 AAATAGAAAGAAACAG
* *
7602387 AAA-AGAAACAAAAAG
1 AAATAGAAAGAAACAG
7602402 AAATAGAAAGAAACAG
1 AAATAGAAAGAAACAG
7602418 -AATAGAAACGAAACA
1 AAATAGAAA-GAAACA
7602433 CGGAGAAAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
12 1 0.03
13 6 0.16
14 3 0.08
15 11 0.30
16 16 0.43
ACGTcount: A:0.73, C:0.08, G:0.14, T:0.05
Consensus pattern (16 bp):
AAATAGAAAGAAACAG
Found at i:7602465 original size:21 final size:20
Alignment explanation
Indices: 7602437--7602476 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
7602427 GAAACACGGA
7602437 GAAAAAG-AAAGACAAGAAAG
1 GAAAAAGAAAAGA-AAGAAAG
7602457 GAAAGAAGAAAAGAAAGAAA
1 GAAA-AAGAAAAGAAAGAAA
7602477 AAGGAGAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.22
21 9 0.50
22 5 0.28
ACGTcount: A:0.72, C:0.03, G:0.25, T:0.00
Consensus pattern (20 bp):
GAAAAAGAAAAGAAAGAAAG
Found at i:7602477 original size:9 final size:9
Alignment explanation
Indices: 7602439--7602477 Score: 53
Period size: 9 Copynumber: 4.4 Consensus size: 9
7602429 AACACGGAGA
7602439 AAAAGAAAG
1 AAAAGAAAG
*
7602448 ACAAGAAAG
1 AAAAGAAAG
*
7602457 GAAAG-AAG
1 AAAAGAAAG
7602465 AAAAGAAAG
1 AAAAGAAAG
7602474 AAAA
1 AAAA
7602478 AGGAGAAATA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
8 7 0.28
9 18 0.72
ACGTcount: A:0.74, C:0.03, G:0.23, T:0.00
Consensus pattern (9 bp):
AAAAGAAAG
Found at i:7602665 original size:29 final size:29
Alignment explanation
Indices: 7602624--7602681 Score: 66
Period size: 29 Copynumber: 2.0 Consensus size: 29
7602614 TTTTTTAGTA
7602624 GGGTTCATGTTGAATA-AATGATTGAATTAG
1 GGGTTCATGTTG-ATAGAATGATTG-ATTAG
* *
7602654 GGGTTTAT-TTGATAGAATTATTGATTAG
1 GGGTTCATGTTGATAGAATGATTGATTAG
7602682 AATTGATTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
28 8 0.32
29 10 0.40
30 7 0.28
ACGTcount: A:0.31, C:0.02, G:0.26, T:0.41
Consensus pattern (29 bp):
GGGTTCATGTTGATAGAATGATTGATTAG
Found at i:7603449 original size:38 final size:39
Alignment explanation
Indices: 7603347--7603454 Score: 112
Period size: 38 Copynumber: 2.8 Consensus size: 39
7603337 GACCTTGAGT
* **
7603347 CGATGAGACACTGGGTGTCACTATTTTACTTCGGATAGATT
1 CGATGAGACACTGGGTGTCA--ACTTTACTTCGGATAGAGC
* * *
7603388 CGATGAGATACTGGGTATC-ACTTTACTTCGGCTAG-GC
1 CGATGAGACACTGGGTGTCAACTTTACTTCGGATAGAGC
* *
7603425 CGATGTGACACTGGGTGTCAACTTTGCTTC
1 CGATGAGACACTGGGTGTCAACTTTACTTC
7603455 AAACTATCCG
Statistics
Matches: 56, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
37 16 0.29
38 23 0.41
41 17 0.30
ACGTcount: A:0.21, C:0.20, G:0.26, T:0.32
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAACTTTACTTCGGATAGAGC
Found at i:7605381 original size:19 final size:20
Alignment explanation
Indices: 7605339--7605381 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
7605329 TCATGCTTTC
*
7605339 TATTCACATTTTCATATTCA
1 TATTCACATTTTCAAATTCA
7605359 -ATTCACATTTTCAAATT-A
1 TATTCACATTTTCAAATTCA
7605377 TATTC
1 TATTC
7605382 CACAATCACG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 1 0.05
19 20 0.95
ACGTcount: A:0.33, C:0.19, G:0.00, T:0.49
Consensus pattern (20 bp):
TATTCACATTTTCAAATTCA
Found at i:7605582 original size:38 final size:39
Alignment explanation
Indices: 7605535--7605643 Score: 123
Period size: 38 Copynumber: 2.8 Consensus size: 39
7605525 CGGATAGTTT
* *
7605535 GAAGCAAAGTTGACACCCAGTGTCTCATCG-GCCTAGCC
1 GAAGTAAAGTTGACACCCAGTGTCTCATCGAACCTAGCC
* * * *
7605573 GAAGTAAAG-TGATACCCAGTATCTCATCGAATCTATCC
1 GAAGTAAAGTTGACACCCAGTGTCTCATCGAACCTAGCC
*
7605611 GAAGTAAAATAGTGACACCCAGTGTCTCATCGA
1 GAAGTAAAGT--TGACACCCAGTGTCTCATCGA
7605644 CTCGAGGTCG
Statistics
Matches: 58, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
37 18 0.31
38 21 0.36
41 19 0.33
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.22
Consensus pattern (39 bp):
GAAGTAAAGTTGACACCCAGTGTCTCATCGAACCTAGCC
Found at i:7605631 original size:41 final size:38
Alignment explanation
Indices: 7605535--7605643 Score: 121
Period size: 41 Copynumber: 2.8 Consensus size: 38
7605525 CGGATAGTTT
* *
7605535 GAAGCAAAGTTGACACCCAGTGTCTCATCG-GCCTAGCC
1 GAAGTAAAG-TGACACCCAGTGTCTCATCGAACCTAGCC
* * * *
7605573 GAAGTAAAGTGATACCCAGTATCTCATCGAATCTATCC
1 GAAGTAAAGTGACACCCAGTGTCTCATCGAACCTAGCC
7605611 GAAGTAAAATAGTGACACCCAGTGTCTCATCGA
1 GAAGT--AA-AGTGACACCCAGTGTCTCATCGA
7605644 CTCGAGGTCG
Statistics
Matches: 59, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
37 18 0.31
38 18 0.31
40 2 0.03
41 21 0.36
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.22
Consensus pattern (38 bp):
GAAGTAAAGTGACACCCAGTGTCTCATCGAACCTAGCC
Found at i:7606356 original size:29 final size:29
Alignment explanation
Indices: 7606308--7606365 Score: 66
Period size: 29 Copynumber: 2.0 Consensus size: 29
7606298 TTAATCAATT
7606308 CTAATCAATAATTCTATCAA-ATAAACCC
1 CTAATCAATAATTCTATCAACATAAACCC
* *
7606336 CTAATTCAATCATT-TATTCAACATGAACCC
1 CTAA-TCAATAATTCTA-TCAACATAAACCC
7606366 TACTCAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
28 6 0.24
29 12 0.48
30 7 0.28
ACGTcount: A:0.41, C:0.26, G:0.02, T:0.31
Consensus pattern (29 bp):
CTAATCAATAATTCTATCAACATAAACCC
Found at i:7606564 original size:21 final size:20
Alignment explanation
Indices: 7606505--7606570 Score: 51
Period size: 26 Copynumber: 2.9 Consensus size: 20
7606495 AAAAACCTTA
*
7606505 TTTCTCCCTTTTCTCTCTTT
1 TTTCTCCCTTTTCTTTCTTT
7606525 TCTTCTTTCCCTTCTTTTCTTTCTTT
1 T-TTC--T-CC--CTTTTCTTTCTTT
7606551 TTTCTCCCTGTTTCGTTTCT
1 TTTCTCCCT-TTTC-TTTCT
7606571 ATTCTGTTTC
Statistics
Matches: 37, Mismatches: 1, Indels: 14
0.71 0.02 0.27
Matches are distributed among these distances:
20 3 0.08
21 7 0.19
22 7 0.19
23 2 0.05
24 2 0.05
25 3 0.08
26 13 0.35
ACGTcount: A:0.00, C:0.32, G:0.03, T:0.65
Consensus pattern (20 bp):
TTTCTCCCTTTTCTTTCTTT
Found at i:7606584 original size:15 final size:16
Alignment explanation
Indices: 7606558--7606601 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
7606548 TTTTTTCTCC
7606558 CTGTTTCGTTTCTATT
1 CTGTTTCGTTTCTATT
7606574 CTGTTTC-TTTCTATT
1 CTGTTTCGTTTCTATT
*
7606589 -TCTTTCTGTTTCT
1 CTGTTTC-GTTTCT
7606602 TTTTATGCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
14 5 0.20
15 8 0.32
16 12 0.48
ACGTcount: A:0.05, C:0.20, G:0.09, T:0.66
Consensus pattern (16 bp):
CTGTTTCGTTTCTATT
Found at i:7606590 original size:10 final size:10
Alignment explanation
Indices: 7606561--7606603 Score: 61
Period size: 10 Copynumber: 4.3 Consensus size: 10
7606551 TTTCTCCCTG
7606561 TTTC-GTTTC
1 TTTCTGTTTC
7606570 TATTCTGTTTC
1 T-TTCTGTTTC
*
7606581 TTTCTATTTC
1 TTTCTGTTTC
7606591 TTTCTGTTTC
1 TTTCTGTTTC
7606601 TTT
1 TTT
7606604 TTATGCTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
9 1 0.03
10 23 0.77
11 6 0.20
ACGTcount: A:0.05, C:0.19, G:0.07, T:0.70
Consensus pattern (10 bp):
TTTCTGTTTC
Found at i:7606955 original size:192 final size:192
Alignment explanation
Indices: 7606628--7606994 Score: 671
Period size: 192 Copynumber: 1.9 Consensus size: 192
7606618 TACTTTAGTC
* *
7606628 TAATAATTATTTTTTATTAAATATTAAGTAAATAAATATGTATTTTACAATTATATGTATATGAT
1 TAATAATTATTATTTATTAAATATTAAGTAAATAAATATGTATTTTACAATTATATGCATATGAT
*
7606693 TTATTACACTTGTACTTTACTATCACCATACATTTGTCAACTTATTAATTTGTTCATTAATCTAA
66 TTATTACACTTGTACTTTACTATCACCATACAATTGTCAACTTATTAATTTGTTCATTAATCTAA
* *
7606758 TAATATAATATTAATTAAATAATAATAACAATGATAATTATTATATTATTATATTAACTTAA
131 TAATATAATATCAATTAAATAATAATAACAATAATAATTATTATATTATTATATTAACTTAA
* *
7606820 TAATAATTATTATTTCTTAAATATTAAGTAAATAAATATGTATTTTACAATTGTATGCATATGAT
1 TAATAATTATTATTTATTAAATATTAAGTAAATAAATATGTATTTTACAATTATATGCATATGAT
7606885 TTATTACACTTGTACTTTACTATCACCATACAATTGTCAACTTATTAATTTGTTCATTAATCTAA
66 TTATTACACTTGTACTTTACTATCACCATACAATTGTCAACTTATTAATTTGTTCATTAATCTAA
7606950 TAATATAATATCAATTAAATAATAATAACAATAATAATTATTATA
131 TAATATAATATCAATTAAATAATAATAACAATAATAATTATTATA
7606995 ATAATAACAA
Statistics
Matches: 168, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
192 168 1.00
ACGTcount: A:0.42, C:0.09, G:0.04, T:0.45
Consensus pattern (192 bp):
TAATAATTATTATTTATTAAATATTAAGTAAATAAATATGTATTTTACAATTATATGCATATGAT
TTATTACACTTGTACTTTACTATCACCATACAATTGTCAACTTATTAATTTGTTCATTAATCTAA
TAATATAATATCAATTAAATAATAATAACAATAATAATTATTATATTATTATATTAACTTAA
Found at i:7607010 original size:24 final size:24
Alignment explanation
Indices: 7606968--7607016 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 24
7606958 TATCAATTAA
*
7606968 ATAATAATAACAATAATAATTATT
1 ATAATAATAACAATAATAAATATT
7606992 ATAATAATAACAA-ATATAAATATT
1 ATAATAATAACAATA-ATAAATATT
7607016 A
1 A
7607017 CAAATATACA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.04
24 22 0.96
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (24 bp):
ATAATAATAACAATAATAAATATT
Found at i:7607127 original size:31 final size:31
Alignment explanation
Indices: 7607092--7607164 Score: 76
Period size: 34 Copynumber: 2.3 Consensus size: 31
7607082 TATTTATCAT
*
7607092 ATAAAAATCTTTTACTAATTA-ATAATAAATA
1 ATAAAAATCTTTTACTAACTATAT-ATAAATA
*
7607123 ATAAAATATATTTTTTACTAACTATATATAAATA
1 AT-AAA-A-ATCTTTTACTAACTATATATAAATA
*
7607157 ATACAAAT
1 ATAAAAAT
7607165 GTACTCATTT
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
31 4 0.11
32 4 0.11
33 3 0.09
34 22 0.63
35 2 0.06
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (31 bp):
ATAAAAATCTTTTACTAACTATATATAAATA
Found at i:7607272 original size:8 final size:8
Alignment explanation
Indices: 7607233--7607293 Score: 51
Period size: 8 Copynumber: 8.0 Consensus size: 8
7607223 AATTTATTTC
7607233 ATAATATA
1 ATAATATA
*
7607241 ATAATTTA
1 ATAATATA
7607249 ATAACT-TA
1 ATAA-TATA
7607257 AT--T-T-
1 ATAATATA
7607261 ATAATATA
1 ATAATATA
7607269 ATAATATA
1 ATAATATA
*
7607277 ATAACAATA
1 ATAA-TATA
7607286 ATAATATA
1 ATAATATA
7607294 TCTTATAATT
Statistics
Matches: 44, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
4 2 0.05
5 2 0.05
6 1 0.02
7 1 0.02
8 30 0.68
9 8 0.18
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.39
Consensus pattern (8 bp):
ATAATATA
Found at i:7610516 original size:10 final size:10
Alignment explanation
Indices: 7610501--7610526 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
7610491 TTTTTCATTT
7610501 AAATTTTTTA
1 AAATTTTTTA
7610511 AAATTTTTTA
1 AAATTTTTTA
7610521 AAATTT
1 AAATTT
7610527 AAATTAGTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (10 bp):
AAATTTTTTA
Found at i:7610612 original size:15 final size:17
Alignment explanation
Indices: 7610591--7610630 Score: 66
Period size: 15 Copynumber: 2.5 Consensus size: 17
7610581 TAATTTTTTA
7610591 AAAATTATTAAAAT-AT
1 AAAATTATTAAAATGAT
7610607 -AAATTATTAAAATGAT
1 AAAATTATTAAAATGAT
7610623 AAAATTAT
1 AAAATTAT
7610631 ATTTTACTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 13 0.59
16 2 0.09
17 7 0.32
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.38
Consensus pattern (17 bp):
AAAATTATTAAAATGAT
Found at i:7610659 original size:81 final size:81
Alignment explanation
Indices: 7610497--7610662 Score: 183
Period size: 80 Copynumber: 2.0 Consensus size: 81
7610487 AAATTTTTTC
* * * * *
7610497 ATTTAAATTTTTTAAAATTTTTTAAAATTTAAATTAGTAAAAATAAAACTACACTTTAATTTTAA
1 ATTTAAATTTTTTAAAAATTATTAAAATATAAATTAGTAAAAATAAAACTACACTTTAACTATAA
7610562 AAAATAATAAAATTTA
66 AAAATAATAAAATTTA
* * * *
7610578 ATTT-AATTTTTTAAAAATTATTAAAATATAAATTATTAAAATGATAAAATTATA-TTTTACTAT
1 ATTTAAATTTTTTAAAAATTATTAAAATATAAATTAGTAAAA--ATAAAACTACACTTTAACTAT
* * * *
7610641 CATAAATATTATAATTTA
64 AAAAAATAATAAAATTTA
7610659 ATTT
1 ATTT
7610663 CGATTCCTAA
Statistics
Matches: 70, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
80 33 0.47
81 28 0.40
82 9 0.13
ACGTcount: A:0.50, C:0.03, G:0.01, T:0.46
Consensus pattern (81 bp):
ATTTAAATTTTTTAAAAATTATTAAAATATAAATTAGTAAAAATAAAACTACACTTTAACTATAA
AAAATAATAAAATTTA
Found at i:7613031 original size:19 final size:20
Alignment explanation
Indices: 7613009--7613046 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
7612999 ATTTTTTATA
*
7613009 TATTATTTATT-TTTAATTG
1 TATTAGTTATTGTTTAATTG
*
7613028 TATTCGTTATTGTTTAATT
1 TATTAGTTATTGTTTAATT
7613047 TTAGTTTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 9 0.56
20 7 0.44
ACGTcount: A:0.24, C:0.03, G:0.08, T:0.66
Consensus pattern (20 bp):
TATTAGTTATTGTTTAATTG
Found at i:7625602 original size:358 final size:357
Alignment explanation
Indices: 7624943--7625659 Score: 1310
Period size: 358 Copynumber: 2.0 Consensus size: 357
7624933 AAGAATTGAT
*
7624943 ATAACATACAACTTTTACCTTATGAGGTCGAAACGGCAGTTCATCTCAGTTCACATTCCGCATCA
1 ATAACATACAACTTTTACCTTATGAGGTCGAAACGGCAGTTCATCTCAATTCACATTCCGCATCA
* * *
7625008 CATAAGAACAACAATCGGGGACCCATGACCATGGGTGCAGTTTGAAAGACAGTCTAGCAAATCAG
66 CATAAGAAAAACAATCAGGGACCCATGACCATGGGTGCAGTTTGAAAGACAGCCTAGCAAATCAG
7625073 GTAACTATGCTACAAATTATATCAACAGCATAACAATTTTCTTGATGACTGATTGATCTATGTCC
131 GTAACTATGCTACAAATTATATCAACAGCATAACAATTTTCTTGATGACTGATTGATCTATGTCC
7625138 CTATCAAGAGAGATTCAAATGAAAACATTCAAATATCAACCAACTAGTAATCAAGAAATAACCAA
196 CTATCAAGAGAGATTCAAATGAAAACATTCAAATATCAACCAACTAGTAATCAAGAAATAACCAA
*
7625203 CAATGATTTCGGAACATTATTTCCAGTGGCAAATATGATTGTAATTGTAAGCTCTGAACAGGGAA
261 CAATGATTTCAGAACATTATTTCCAGTGGCAAATATGATTGTAATTGTAAGCTCTGAACAGGGAA
7625268 CTAAAAGCAAATGCCAAACCATGTTTAATTGCA
326 CTAAAAGC-AATGCCAAACCATGTTTAATTGCA
7625301 ATAACATACAACTTTTACCTTATGAGGTCGAAACGGCAGTTCATCTCAATTCACATTCCGCATCA
1 ATAACATACAACTTTTACCTTATGAGGTCGAAACGGCAGTTCATCTCAATTCACATTCCGCATCA
7625366 CATAAGAAAAACAATCAGGGACCCATGACCGA-GGGTGCAGTTTGAAAGACAGCCTAGCAAATCA
66 CATAAGAAAAACAATCAGGGACCCATGACC-ATGGGTGCAGTTTGAAAGACAGCCTAGCAAATCA
*
7625430 GGTAACTATGTTACAAATTATATCAACAGCATAACAATTTTCTTGATGACTGATTGATCTATGTC
130 GGTAACTATGCTACAAATTATATCAACAGCATAACAATTTTCTTGATGACTGATTGATCTATGTC
* *
7625495 CCTATCAAGAGAGATTCAAATGAGAACATTCAAATATCAACCGACTAGTAATCAAGAAATAACCA
195 CCTATCAAGAGAGATTCAAATGAAAACATTCAAATATCAACCAACTAGTAATCAAGAAATAACCA
* * *
7625560 ACAATGGTTTCAGAACATTATTTCCAGTGGCAAATGTGATTGTGATTGTAAGCTCTGAACAGGGA
260 ACAATGATTTCAGAACATTATTTCCAGTGGCAAATATGATTGTAATTGTAAGCTCTGAACAGGGA
7625625 ACTAAAAGCAATGCCAAACCATGTTTAATTGCA
325 ACTAAAAGCAATGCCAAACCATGTTTAATTGCA
7625658 AT
1 AT
7625660 GGCAAATGAA
Statistics
Matches: 347, Mismatches: 11, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
357 26 0.07
358 320 0.92
359 1 0.00
ACGTcount: A:0.38, C:0.20, G:0.16, T:0.26
Consensus pattern (357 bp):
ATAACATACAACTTTTACCTTATGAGGTCGAAACGGCAGTTCATCTCAATTCACATTCCGCATCA
CATAAGAAAAACAATCAGGGACCCATGACCATGGGTGCAGTTTGAAAGACAGCCTAGCAAATCAG
GTAACTATGCTACAAATTATATCAACAGCATAACAATTTTCTTGATGACTGATTGATCTATGTCC
CTATCAAGAGAGATTCAAATGAAAACATTCAAATATCAACCAACTAGTAATCAAGAAATAACCAA
CAATGATTTCAGAACATTATTTCCAGTGGCAAATATGATTGTAATTGTAAGCTCTGAACAGGGAA
CTAAAAGCAATGCCAAACCATGTTTAATTGCA
Found at i:7626195 original size:394 final size:394
Alignment explanation
Indices: 7625462--7626255 Score: 1570
Period size: 394 Copynumber: 2.0 Consensus size: 394
7625452 TCAACAGCAT
*
7625462 AACAATTTTCTTGATGACTGATTGATCTATGTCCCTATCAAGAGAGATTCAAATGAGAACATTCA
1 AACAGTTTTCTTGATGACTGATTGATCTATGTCCCTATCAAGAGAGATTCAAATGAGAACATTCA
7625527 AATATCAACCGACTAGTAATCAAGAAATAACCAACAATGGTTTCAGAACATTATTTCCAGTGGCA
66 AATATCAACCGACTAGTAATCAAGAAATAACCAACAATGGTTTCAGAACATTATTTCCAGTGGCA
7625592 AATGTGATTGTGATTGTAAGCTCTGAACAGGGAACTAAAAGCAATGCCAAACCATGTTTAATTGC
131 AATGTGATTGTGATTGTAAGCTCTGAACAGGGAACTAAAAGCAATGCCAAACCATGTTTAATTGC
7625657 AATGGCAAATGAAAATGCCAAACTTAGCCATATCTGTAAGTTTCATTATGATGTGTTCTACAATT
196 AATGGCAAATGAAAATGCCAAACTTAGCCATATCTGTAAGTTTCATTATGATGTGTTCTACAATT
7625722 TTATACCTTTACCTCTAATTTCTCAACTAAACAGCAAGTCTTTTACATGTAAAATTAAAAGCTAT
261 TTATACCTTTACCTCTAATTTCTCAACTAAACAGCAAGTCTTTTACATGTAAAATTAAAAGCTAT
7625787 GGTAATTTTAAAAAAGAAATGTGCTTTATTTGATAATAAAACATCTTTATTTTACAGAATACTGA
326 GGTAATTTTAAAAAAGAAATGTGCTTTATTTGATAATAAAACATCTTTATTTTACAGAATACTGA
7625852 TAAA
391 TAAA
7625856 AACAGTTTTCTTGATGACTGATTGATCTATGTCCCTATCAAGAGAGATTCAAATGAGAACATTCA
1 AACAGTTTTCTTGATGACTGATTGATCTATGTCCCTATCAAGAGAGATTCAAATGAGAACATTCA
*
7625921 AATATCAACCGACTAGTAATCAAGAAATAACCAACAATGGTTTCGGAACATTATTTCCAGTGGCA
66 AATATCAACCGACTAGTAATCAAGAAATAACCAACAATGGTTTCAGAACATTATTTCCAGTGGCA
7625986 AATGTGATTGTGATTGTAAGCTCTGAACAGGGAACTAAAAGCAATGCCAAACCATGTTTAATTGC
131 AATGTGATTGTGATTGTAAGCTCTGAACAGGGAACTAAAAGCAATGCCAAACCATGTTTAATTGC
7626051 AATGGCAAATGAAAATGCCAAACTTAGCCATATCTGTAAGTTTCATTATGATGTGTTCTACAATT
196 AATGGCAAATGAAAATGCCAAACTTAGCCATATCTGTAAGTTTCATTATGATGTGTTCTACAATT
7626116 TTATACCTTTACCTCTAATTTCTCAACTAAACAGCAAGTCTTTTACATGTAAAATTAAAAGCTAT
261 TTATACCTTTACCTCTAATTTCTCAACTAAACAGCAAGTCTTTTACATGTAAAATTAAAAGCTAT
7626181 GGTAATTTTAAAAAAGAAATGTGCTTTATTTGATAATAAAACATCTTTATTTTACAGAATACTGA
326 GGTAATTTTAAAAAAGAAATGTGCTTTATTTGATAATAAAACATCTTTATTTTACAGAATACTGA
7626246 TAAA
391 TAAA
7626250 AACAGT
1 AACAGT
7626256 ACAACACAAA
Statistics
Matches: 398, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
394 398 1.00
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.32
Consensus pattern (394 bp):
AACAGTTTTCTTGATGACTGATTGATCTATGTCCCTATCAAGAGAGATTCAAATGAGAACATTCA
AATATCAACCGACTAGTAATCAAGAAATAACCAACAATGGTTTCAGAACATTATTTCCAGTGGCA
AATGTGATTGTGATTGTAAGCTCTGAACAGGGAACTAAAAGCAATGCCAAACCATGTTTAATTGC
AATGGCAAATGAAAATGCCAAACTTAGCCATATCTGTAAGTTTCATTATGATGTGTTCTACAATT
TTATACCTTTACCTCTAATTTCTCAACTAAACAGCAAGTCTTTTACATGTAAAATTAAAAGCTAT
GGTAATTTTAAAAAAGAAATGTGCTTTATTTGATAATAAAACATCTTTATTTTACAGAATACTGA
TAAA
Found at i:7640386 original size:21 final size:21
Alignment explanation
Indices: 7640347--7640386 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
7640337 TGAGTCGAGG
*
7640347 ATTTAATATTTAAGGTTTACA
1 ATTTAATATTTAAAGTTTACA
* *
7640368 ATTTAATGTTTAAATTTTA
1 ATTTAATATTTAAAGTTTA
7640387 GATTTCAGGA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.38, C:0.03, G:0.07, T:0.53
Consensus pattern (21 bp):
ATTTAATATTTAAAGTTTACA
Found at i:7642511 original size:15 final size:17
Alignment explanation
Indices: 7642481--7642514 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
7642471 GTATAAAATT
7642481 TTAAAAAAACATAAAAG
1 TTAAAAAAACATAAAAG
7642498 TTAAAAAAA-A-AAAAG
1 TTAAAAAAACATAAAAG
7642513 TT
1 TT
7642515 GAGGCCCTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.41
16 1 0.06
17 9 0.53
ACGTcount: A:0.71, C:0.03, G:0.06, T:0.21
Consensus pattern (17 bp):
TTAAAAAAACATAAAAG
Found at i:7643194 original size:130 final size:131
Alignment explanation
Indices: 7643042--7643311 Score: 445
Period size: 130 Copynumber: 2.1 Consensus size: 131
7643032 AAAAAAATAC
* *
7643042 ACTAAATTAATACATTTTAAACATAATGTACTAAAATAATGTAAAATAATAAAATACGAAAATAA
1 ACTAAATTAATACATTTCAAACATAATATACTAAAATAATGTAAAATAATAAAATACGAAAATAA
*
7643107 TATATATATTTGAAAGTAATAAAATCC-GAAAAAAATACGAACAAATGGCTGAAATAAGAG-TTT
66 TATAT-TATTTGAAAGAAATAAAATCCGGAAAAAAATACGAACAAATGGCTGAAATAAGAGTTTT
7643170 TT
130 TT
*
7643172 ACTAAATTAATACATTTCAAACATAATATACTAAAATAATGTAAAATAATAAAATATGAAAATAA
1 ACTAAATTAATACATTTCAAACATAATATACTAAAATAATGTAAAATAATAAAATACGAAAATAA
* * *
7643237 TATATTTTTTGAAAGAAATAAAATCCGGGGAAAAAATACGAACAAATGGCTGAAATAAGGGTTTT
66 TATATTATTTGAAAGAAATAAAATCC-GGAAAAAAATACGAACAAATGGCTGAAATAAGAGTTTT
7643302 TT
130 TT
7643304 ACTAAATT
1 ACTAAATT
7643312 TAATTAAAAA
Statistics
Matches: 130, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
129 19 0.15
130 67 0.52
131 31 0.24
132 13 0.10
ACGTcount: A:0.53, C:0.08, G:0.10, T:0.30
Consensus pattern (131 bp):
ACTAAATTAATACATTTCAAACATAATATACTAAAATAATGTAAAATAATAAAATACGAAAATAA
TATATTATTTGAAAGAAATAAAATCCGGAAAAAAATACGAACAAATGGCTGAAATAAGAGTTTTT
T
Found at i:7643359 original size:155 final size:154
Alignment explanation
Indices: 7643174--7643621 Score: 661
Period size: 155 Copynumber: 2.9 Consensus size: 154
7643164 GAGTTTTTAC
* * *
7643174 TAAATTAATACATTTCAAACATAATATACTAAAATAATGTAAAATAATAAAATATGAAAATAATA
1 TAAATTAATACATTTCAAACATAATGTACTAAAATAATATAAAATAATAAAATACGAAAATAATA
*
7643239 TATTTTTTGAAAGAAATAAAATCCGGGGAAAAAATACGAACAAATGGCTGAAATAAGGGTTTTTT
66 TATTTTTTGAAAGAAATAAAATCCGGGAAAAAAATACGAACAAATGGCTGAAATAAGGGTTTTTT
*
7643304 ACTAAATTTAATTAAAAAATTACAG
131 ACTAAATTTAATTAAAAAA-CACAG
*
7643329 TAAATTAATACATTTCAAGCATAATGTACTAAAATAATATAAAATAATAAAATACGAAAATAATA
1 TAAATTAATACATTTCAAACATAATGTACTAAAATAATATAAAATAATAAAATACGAAAATAATA
** * **
7643394 TATTTTTTTTGAAAGAAATAAAATCCAAGAAAAAAATACGAACAAAGGGCCAAAATAAGGGTTTT
66 TA--TTTTTTGAAAGAAATAAAATCCGGGAAAAAAATACGAACAAATGGCTGAAATAAGGGTTTT
* *
7643459 TT--TAAAATTTATTTAAAAAACATAG
129 TTACT-AAATTTAATTAAAAAACACAG
*
7643484 TAAATTAATACATTTTAAACATAATGTACTAAAATAATATAAAATAATAAAATACGAAAATAATA
1 TAAATTAATACATTTCAAACATAATGTACTAAAATAATATAAAATAATAAAATACGAAAATAATA
* * * *
7643549 TATTTTTT-AAAGTAATAAAATCTGGGAAAAAAATGCGAATAAATGG-TCGAAATAAGGGTTTTT
66 TATTTTTTGAAAGAAATAAAATCCGGGAAAAAAATACGAACAAATGGCT-GAAATAAGGGTTTTT
7643612 TACTAAATTT
130 TACTAAATTT
7643622 GTTTTGAAGT
Statistics
Matches: 263, Mismatches: 24, Indels: 14
0.87 0.08 0.05
Matches are distributed among these distances:
152 46 0.17
153 12 0.05
154 1 0.00
155 132 0.50
156 15 0.06
157 57 0.22
ACGTcount: A:0.52, C:0.07, G:0.10, T:0.31
Consensus pattern (154 bp):
TAAATTAATACATTTCAAACATAATGTACTAAAATAATATAAAATAATAAAATACGAAAATAATA
TATTTTTTGAAAGAAATAAAATCCGGGAAAAAAATACGAACAAATGGCTGAAATAAGGGTTTTTT
ACTAAATTTAATTAAAAAACACAG
Found at i:7648945 original size:23 final size:23
Alignment explanation
Indices: 7648900--7648946 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
7648890 TAAAAATAAT
*
7648900 AACTAACAATAATATAATGTAAA
1 AACTAACAATAATATAATCTAAA
*
7648923 AACTAACAATCATACTAA-CTAAA
1 AACTAACAATAATA-TAATCTAAA
7648946 A
1 A
7648947 TAATAATTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 18 0.86
24 3 0.14
ACGTcount: A:0.60, C:0.15, G:0.02, T:0.23
Consensus pattern (23 bp):
AACTAACAATAATATAATCTAAA
Found at i:7649022 original size:41 final size:40
Alignment explanation
Indices: 7648815--7649022 Score: 116
Period size: 40 Copynumber: 5.2 Consensus size: 40
7648805 CCACTAATCC
*
7648815 TAATAACTAACACAATAATAATAA-TA-GTTTTTTACTCAA-AA
1 TAAT-ACTAAC-CAA-AATAATAATTAGGGTTTTTACT-AACAA
* * *
7648856 TAATAATAACTAACAATAATAATTAGGG-TTTTACTAAAAA
1 TAATACTAACCAA-AATAATAATTAGGGTTTTTACTAACAA
****
7648896 TAATAACTAA-CAATAAT-ATAA-T---GTAAAAACTAACAA
1 TAAT-ACTAACCAA-AATAATAATTAGGGTTTTTACTAACAA
* * *
7648932 TCATACTAACTAAAATAATAATTAGGGTTTTTACTAATC-C
1 TAATACTAACCAAAATAATAATTAGGGTTTTTACTAA-CAA
* *
7648972 TAATAACTAACCATAATAATAATTTTA-GTTTTTTACTAACAA
1 TAAT-ACTAACCAAAATAATAA--TTAGGGTTTTTACTAACAA
7649014 TAATACTAA
1 TAATACTAA
7649023 GTAACAATAA
Statistics
Matches: 127, Mismatches: 24, Indels: 32
0.69 0.13 0.17
Matches are distributed among these distances:
35 9 0.07
36 16 0.13
37 1 0.01
38 1 0.01
39 16 0.13
40 35 0.28
41 31 0.24
42 15 0.12
43 3 0.02
ACGTcount: A:0.50, C:0.12, G:0.04, T:0.34
Consensus pattern (40 bp):
TAATACTAACCAAAATAATAATTAGGGTTTTTACTAACAA
Found at i:7649284 original size:3 final size:3
Alignment explanation
Indices: 7649278--7649311 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
7649268 CTGGCACCAC
*
7649278 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTC CTT C
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT C
7649312 AGCTGGACTG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (3 bp):
CTT
Found at i:7651251 original size:42 final size:42
Alignment explanation
Indices: 7651181--7651261 Score: 99
Period size: 42 Copynumber: 1.9 Consensus size: 42
7651171 CGTGTCCTTG
*
7651181 CCCGTGTAACTCACTGACTTGAAACACACGACCGTGTCCCAA
1 CCCGTGTAACTCACTGACTTGAAACACACGACCATGTCCCAA
* * *** *
7651223 CCCGTGTAATTCTCTGACTTGGGTCACACGGCCATGTCC
1 CCCGTGTAACTCACTGACTTGAAACACACGACCATGTCC
7651262 TACATCATGT
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 32 1.00
ACGTcount: A:0.22, C:0.35, G:0.20, T:0.23
Consensus pattern (42 bp):
CCCGTGTAACTCACTGACTTGAAACACACGACCATGTCCCAA
Found at i:7656309 original size:160 final size:161
Alignment explanation
Indices: 7656037--7656337 Score: 385
Period size: 160 Copynumber: 1.9 Consensus size: 161
7656027 TATATAATAA
* * * * * *
7656037 GGGTAAATTACACTATTAGTCACTAAACTATTAGAAAACTTACGTTTTAGTCGTTCAACTTCAAA
1 GGGTAAACTACACCATTAGTCACTAAACTAATAGAAAACTTACATTTTAGTCCTTCAACTTAAAA
** * * **
7656102 AAGTTACAAAATAGTCACTAAACTATTCTTAAGTTTTCATTTAAGTCACTGAAATATTTAAATTT
66 AAGTTACAAAATAGTCACTAAACTATTCAAAAGTTTTCATGTAAGTCACTGAAATATTCAAAAGT
7656167 TTTTATTTAAGTTACAGGACTGTTAATTTTT
131 TTTTATTTAAGTTACAGGACTGTTAATTTTT
* * *
7656198 GGGTAAACTACACCATTAGTCACTAAAC-AATGGATAAATTTTCATTTTAGTCACTT-AAC-TAA
1 GGGTAAACTACACCATTAGTCACTAAACTAATAGA-AAACTTACATTTTAGTC-CTTCAACTTAA
* * *
7656260 AAAATTTAC-AAATTGATCACTAAACTATTCAAAAGTTTTCATGTAAGTCACTGAACTATTCAAA
64 AAAAGTTACAAAATAG-TCACTAAACTATTCAAAAGTTTTCATGTAAGTCACTGAAATATTCAAA
7656324 AGTTTTTATTTAAG
128 AGTTTTTATTTAAG
7656338 CTACTAGGCT
Statistics
Matches: 119, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
159 5 0.04
160 69 0.58
161 43 0.36
162 2 0.02
ACGTcount: A:0.38, C:0.14, G:0.10, T:0.38
Consensus pattern (161 bp):
GGGTAAACTACACCATTAGTCACTAAACTAATAGAAAACTTACATTTTAGTCCTTCAACTTAAAA
AAGTTACAAAATAGTCACTAAACTATTCAAAAGTTTTCATGTAAGTCACTGAAATATTCAAAAGT
TTTTATTTAAGTTACAGGACTGTTAATTTTT
Found at i:7663045 original size:30 final size:30
Alignment explanation
Indices: 7663011--7663072 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
7663001 ACTTATTTTA
7663011 TTGTTAATTTTGTTATTATTTTAAAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
*
7663041 TTGTTAATTTTGTTATTATTTTAGAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
7663071 TT
1 TT
7663073 TCTTTTTAAG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.27, C:0.03, G:0.11, T:0.58
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGACAT
Found at i:7663207 original size:11 final size:11
Alignment explanation
Indices: 7663191--7663225 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
7663181 GTATTATATA
*
7663191 TATATATAAAT
1 TATATAAAAAT
7663202 TATATAAAAAT
1 TATATAAAAAT
*
7663213 AATATAAAAAT
1 TATATAAAAAT
7663224 TA
1 TA
7663226 ATACGGGCAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (11 bp):
TATATAAAAAT
Found at i:7663720 original size:27 final size:27
Alignment explanation
Indices: 7663683--7663749 Score: 91
Period size: 27 Copynumber: 2.5 Consensus size: 27
7663673 CTTAAACCTT
*
7663683 AAACCTCAAACTTCGAATCTTGAAC-CC
1 AAACCTTAAACTTCGAA-CTTGAACTCC
*
7663710 AAACCTTAAACTTCGAACTTGAACTCT
1 AAACCTTAAACTTCGAACTTGAACTCC
*
7663737 AAACCCTAAACTT
1 AAACCTTAAACTT
7663750 TAAATTCTAA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
26 7 0.19
27 29 0.81
ACGTcount: A:0.39, C:0.30, G:0.06, T:0.25
Consensus pattern (27 bp):
AAACCTTAAACTTCGAACTTGAACTCC
Found at i:7663753 original size:34 final size:35
Alignment explanation
Indices: 7663675--7663788 Score: 96
Period size: 34 Copynumber: 3.3 Consensus size: 35
7663665 TTCTAAATCT
* * **
7663675 TAAACCTTAAACCTC-AAACTTCGAATCTTGAACCC
1 TAAACATTAAACTTCTAAACTT-GAATCTCAAACCC
* *
7663710 -AAACCTTAAACTTC-GAACTTGAA-CTCTAAACCC
1 TAAACATTAAACTTCTAAACTTGAATCTC-AAACCC
*
7663743 TAAACTTTAAA-TTCTAAACTTGAATCTCAAA-CC
1 TAAACATTAAACTTCTAAACTTGAATCTCAAACCC
7663776 TAAAACATTAAAC
1 T-AAACATTAAAC
7663789 CCCAAATTGA
Statistics
Matches: 66, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
32 2 0.03
33 14 0.21
34 47 0.71
35 3 0.05
ACGTcount: A:0.42, C:0.26, G:0.04, T:0.27
Consensus pattern (35 bp):
TAAACATTAAACTTCTAAACTTGAATCTCAAACCC
Found at i:7665014 original size:3 final size:3
Alignment explanation
Indices: 7665006--7665035 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
7664996 TATATAGGTT
7665006 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7665036 GAGTTTTCCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:7667033 original size:51 final size:52
Alignment explanation
Indices: 7666952--7667053 Score: 170
Period size: 51 Copynumber: 2.0 Consensus size: 52
7666942 TAGTTTAATC
*
7666952 AGTCTGATAAATTTAATTAAATAAATTATT-AAAATAAAAAGATAAAAAAAT
1 AGTCCGATAAATTTAATTAAATAAATTATTAAAAATAAAAAGATAAAAAAAT
* *
7667003 AGTCCGATAAATTTAATTAAATAAATTATTAAAAATAGAGAGATAAAAAAA
1 AGTCCGATAAATTTAATTAAATAAATTATTAAAAATAAAAAGATAAAAAAA
7667054 CAGATATGTA
Statistics
Matches: 47, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
51 29 0.62
52 18 0.38
ACGTcount: A:0.60, C:0.03, G:0.08, T:0.29
Consensus pattern (52 bp):
AGTCCGATAAATTTAATTAAATAAATTATTAAAAATAAAAAGATAAAAAAAT
Found at i:7669628 original size:18 final size:18
Alignment explanation
Indices: 7669594--7669628 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7669584 CTCCTTTAAA
*
7669594 AATTTAATCATAATTTAG
1 AATTTAATAATAATTTAG
*
7669612 AATTTAATAATATTTTA
1 AATTTAATAATAATTTA
7669629 ATTCATCCAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (18 bp):
AATTTAATAATAATTTAG
Found at i:7669948 original size:21 final size:21
Alignment explanation
Indices: 7669922--7669971 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
7669912 CGCTATTGAA
* *
7669922 GAAGACGATGAAGATGAAGAC
1 GAAGACGAAGAAGACGAAGAC
*
7669943 GAAGACGAAGAAGACGAAGAT
1 GAAGACGAAGAAGACGAAGAC
*
7669964 GAAAACGA
1 GAAGACGA
7669972 CGTCTTGTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.52, C:0.10, G:0.32, T:0.06
Consensus pattern (21 bp):
GAAGACGAAGAAGACGAAGAC
Found at i:7669956 original size:33 final size:33
Alignment explanation
Indices: 7669893--7669966 Score: 78
Period size: 33 Copynumber: 2.2 Consensus size: 33
7669883 GGTGAAGATT
* * * *
7669893 ACGATGACGATGAAGACGACGCTATTGAAGAAG
1 ACGATGAAGATGAAGACGAAGCGATAGAAGAAG
*
7669926 ACGATGAAGATGAAGACGAAGACGA-AGAAGACG
1 ACGATGAAGATGAAGACGAAG-CGATAGAAGAAG
*
7669959 AAGATGAA
1 ACGATGAA
7669967 AACGACGTCT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
33 32 0.94
34 2 0.06
ACGTcount: A:0.46, C:0.12, G:0.31, T:0.11
Consensus pattern (33 bp):
ACGATGAAGATGAAGACGAAGCGATAGAAGAAG
Found at i:7669973 original size:15 final size:15
Alignment explanation
Indices: 7669919--7669962 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
7669909 CGACGCTATT
* *
7669919 GAAGAAGACGATGAA
1 GAAGAAGACGAAGAC
*
7669934 GATGAAGACGAAGAC
1 GAAGAAGACGAAGAC
7669949 GAAGAAGACGAAGA
1 GAAGAAGACGAAGA
7669963 TGAAAACGAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.52, C:0.09, G:0.34, T:0.05
Consensus pattern (15 bp):
GAAGAAGACGAAGAC
Found at i:7672374 original size:28 final size:28
Alignment explanation
Indices: 7672334--7672388 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
7672324 AGCATTAATG
7672334 GTGCAATTGACTGCTAGATGGAAGTTTA
1 GTGCAATTGACTGCTAGATGGAAGTTTA
*
7672362 GTGCAATTGACTGCTGGATGGAAGTTT
1 GTGCAATTGACTGCTAGATGGAAGTTT
7672389 TGGTATTGTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.25, C:0.11, G:0.31, T:0.33
Consensus pattern (28 bp):
GTGCAATTGACTGCTAGATGGAAGTTTA
Found at i:7684570 original size:12 final size:13
Alignment explanation
Indices: 7684545--7684577 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
7684535 CAGCTCTCAT
7684545 ATAAGAAGAGAAA
1 ATAAGAAGAGAAA
7684558 ATAAGAA-AGAAA
1 ATAAGAAGAGAAA
7684570 ATAA-AAGA
1 ATAAGAAGA
7684578 AACTTGCTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 2 0.11
12 10 0.53
13 7 0.37
ACGTcount: A:0.73, C:0.00, G:0.18, T:0.09
Consensus pattern (13 bp):
ATAAGAAGAGAAA
Found at i:7688477 original size:14 final size:12
Alignment explanation
Indices: 7688452--7688485 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
7688442 TTATATTTTT
7688452 TAAAAAATTATA
1 TAAAAAATTATA
*
7688464 TAAAAAATGATA
1 TAAAAAATTATA
7688476 TAAAAAATTA
1 TAAAAAATTA
7688486 ATACGGGTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (12 bp):
TAAAAAATTATA
Found at i:7689840 original size:15 final size:16
Alignment explanation
Indices: 7689814--7689843 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
7689804 TGTAGTGATA
7689814 TTAATGTTTTTTTATG
1 TTAATGTTTTTTTATG
7689830 TTAAT-TTTTTTTAT
1 TTAATGTTTTTTTAT
7689844 TAATGTATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.20, C:0.00, G:0.07, T:0.73
Consensus pattern (16 bp):
TTAATGTTTTTTTATG
Found at i:7689846 original size:13 final size:14
Alignment explanation
Indices: 7689812--7689849 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
7689802 AGTGTAGTGA
7689812 TATTAATGTTTTTT
1 TATTAATGTTTTTT
7689826 TATGTTAAT-TTTTTT
1 TA--TTAATGTTTTTT
7689841 TATTAATGT
1 TATTAATGT
7689850 ATTAACTCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 6
0.78 0.00 0.22
Matches are distributed among these distances:
13 5 0.24
14 3 0.14
15 8 0.38
16 5 0.24
ACGTcount: A:0.24, C:0.00, G:0.08, T:0.68
Consensus pattern (14 bp):
TATTAATGTTTTTT
Found at i:7709898 original size:25 final size:25
Alignment explanation
Indices: 7709851--7709898 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
7709841 TACACTAATA
* *
7709851 AGAGTTTAAGTGTGAAACTAAAAAT
1 AGAGTTTAAGTGGGAAACGAAAAAT
7709876 AGAGTTTAAGTGGGAGAA-GAAAA
1 AGAGTTTAAGTGGGA-AACGAAAA
7709899 GCCAAAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 18 0.90
26 2 0.10
ACGTcount: A:0.48, C:0.02, G:0.27, T:0.23
Consensus pattern (25 bp):
AGAGTTTAAGTGGGAAACGAAAAAT
Found at i:7712618 original size:25 final size:24
Alignment explanation
Indices: 7712582--7712638 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
7712572 AAATTTTAGA
7712582 ATTTATAATTTTTATAAACT-TATAT
1 ATTT-TAATTTTT-TAAACTATATAT
* *
7712607 ATTTTAATTTTTTTAGATTATATAT
1 ATTTTAA-TTTTTTAAACTATATAT
7712632 ATTTTAA
1 ATTTTAA
7712639 ATCTCAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
24 7 0.25
25 21 0.75
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.60
Consensus pattern (24 bp):
ATTTTAATTTTTTAAACTATATAT
Found at i:7716218 original size:401 final size:400
Alignment explanation
Indices: 7715424--7716228 Score: 1385
Period size: 401 Copynumber: 2.0 Consensus size: 400
7715414 TTAGGGACTA
* * *
7715424 AATTGATCAAATCCTAAAATTTCTGGGTAAAACTATAAAATCTAAAAAAGGGACACGTAGTCATG
1 AATTGATCAAATCCTAAAATTTCTGGGCAAAACTATAAAATCTAAAAAAGGGACACATAGTAATG
* * * *
7715489 TGATTGGACCGTGTGGAAAGCTCTAGACTGTGTGGAAGGGATACACTGCCATGTCATAAACTGTG
66 TGATTGGACCGTGTGGAAAGCCCTAGACTGTGTAGAAGGGATACACGGCCATGTCACAAACTGTG
*
7715554 GCTATATGGTATTTGCAAAATCAACCTACCGTGTGGCAGGTCATGTGAGAATTGAAATAACCTAG
131 GCCATATGGTATTTGCAAAATCAACCTACCGTGTGGCAGGTCATGTGAGAATTGAAATAACCTAG
7715619 GGTTTCAAGGGAACATGGATGTGTAATGGGTTGTGTGGTCCACACGCCTATGTAGAAGATCGTGT
196 GGTTTCAAGGGAACATGGATGTGTAATGGGTTGTGTGGTCCACACGCCTATGTAGAAGATCGTGT
* *
7715684 GGCCCTATCTTAGGCATAGTTTTACCTCGATTCACTTGTAAAAGAACACACACCTGTCATTGGGA
261 GGCCCTATCCTAGACATAGTTTTACCTCGATTCACTTGTAAAAGAACACACACCTGTCATTGGGA
* **
7715749 TCTCCAGCGACGTTCCTCACGTTCAAATCTGGTCTGAGGTACCTAAACGGGTCATTCAAATGACA
326 TCTCCAGCAACGTTCCTCACGTTCAAATCTGGTCTGAGGTACCTAAACGGGTCATTCAAACAACA
*
7715814 TTTACTCAAT
391 TTTACGCAAT
* *
7715824 AATTGATCAAATCCTAAAATTTTTGGGCAAAACTGTAAAATCTAAAAAAAGGGACACATAGTAAT
1 AATTGATCAAATCCTAAAATTTCTGGGCAAAACTATAAAATCT-AAAAAAGGGACACATAGTAAT
*
7715889 GTGATTGGACCGTGTGGAAAGCCCTAGATTGTGTAGAAGGGATACACGGCCATGTCACAAACTGT
65 GTGATTGGACCGTGTGGAAAGCCCTAGACTGTGTAGAAGGGATACACGGCCATGTCACAAACTGT
* *
7715954 GGCCATGTGGTATTTGCAAAATCAACCTACCGTGTGGCAGGTCGTGTGAGAATTGAAATAACCTA
130 GGCCATATGGTATTTGCAAAATCAACCTACCGTGTGGCAGGTCATGTGAGAATTGAAATAACCTA
* * *
7716019 GGGTTTCAAGGGGACATGGATGTGTGATGGGTTGTGTGGTCCACACGCCTATGTGGAAGATCGTG
195 GGGTTTCAAGGGAACATGGATGTGTAATGGGTTGTGTGGTCCACACGCCTATGTAGAAGATCGTG
7716084 TGGCCCTATCCTAGACATAGTTTTACCTCGATTCACTTGTAAAAGAACACACACCTGTCATTGGG
260 TGGCCCTATCCTAGACATAGTTTTACCTCGATTCACTTGTAAAAGAACACACACCTGTCATTGGG
* *
7716149 ATCTCTAGCAACGTTCCTCACGTTCAAATCTGGTCTGAGGTACCTAAACGGGTCCTTCAAACAAC
325 ATCTCCAGCAACGTTCCTCACGTTCAAATCTGGTCTGAGGTACCTAAACGGGTCATTCAAACAAC
7716214 ATTTACGCAAT
390 ATTTACGCAAT
7716225 AATT
1 AATT
7716229 AATAACGAAT
Statistics
Matches: 380, Mismatches: 24, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
400 40 0.11
401 340 0.89
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.27
Consensus pattern (400 bp):
AATTGATCAAATCCTAAAATTTCTGGGCAAAACTATAAAATCTAAAAAAGGGACACATAGTAATG
TGATTGGACCGTGTGGAAAGCCCTAGACTGTGTAGAAGGGATACACGGCCATGTCACAAACTGTG
GCCATATGGTATTTGCAAAATCAACCTACCGTGTGGCAGGTCATGTGAGAATTGAAATAACCTAG
GGTTTCAAGGGAACATGGATGTGTAATGGGTTGTGTGGTCCACACGCCTATGTAGAAGATCGTGT
GGCCCTATCCTAGACATAGTTTTACCTCGATTCACTTGTAAAAGAACACACACCTGTCATTGGGA
TCTCCAGCAACGTTCCTCACGTTCAAATCTGGTCTGAGGTACCTAAACGGGTCATTCAAACAACA
TTTACGCAAT
Found at i:7719438 original size:15 final size:15
Alignment explanation
Indices: 7719420--7719448 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
7719410 TATATTCTTA
7719420 ATAAATATAAATATT
1 ATAAATATAAATATT
7719435 ATAAATATAAATAT
1 ATAAATATAAATAT
7719449 ATAGTTTGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
ATAAATATAAATATT
Found at i:7723489 original size:4 final size:4
Alignment explanation
Indices: 7723480--7723507 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
7723470 AGCTGTTTTT
7723480 CAAA CAAA CAAA CAAA CAAA CAAA CAAA
1 CAAA CAAA CAAA CAAA CAAA CAAA CAAA
7723508 AGGCTTTCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.75, C:0.25, G:0.00, T:0.00
Consensus pattern (4 bp):
CAAA
Found at i:7734436 original size:43 final size:42
Alignment explanation
Indices: 7734385--7734632 Score: 172
Period size: 43 Copynumber: 5.8 Consensus size: 42
7734375 AAGATCAGGG
* *
7734385 TCTTTAGCGGCGTTTTTATCTAAAACGCCGC-AATAGACCCTGA
1 TCTTTAGCGGCGCTTTTACCTAAAACGCCGCTAA-AGACCCT-A
* * * *
7734428 TCTATAGCGGC-ATTTATACC-ACAAACGCCACTAAAGAACCTA
1 TCTTTAGCGGCGCTTT-TACCTA-AAACGCCGCTAAAGACCCTA
* *
7734470 TTCTTTAGCGGCGCTTTGACCCT-AAACGCCACTAAAGA-CCTA
1 -TCTTTAGCGGCGCTTTTA-CCTAAAACGCCGCTAAAGACCCTA
** * * *
7734512 TTCTTTAGCGGCGCTTTCCCCTCAAACCCCGC-AATAGACTCTGA
1 -TCTTTAGCGGCGCTTTTACCTAAAACGCCGCTAA-AGACCCT-A
*
7734556 TCTATAGCGGCGC-TTT--CTCACAAACGCCGCTAAAGACCCTTA
1 TCTTTAGCGGCGCTTTTACCT-A-AAACGCCGCTAAAGACCC-TA
* * *
7734598 TCTTTAGCGGCGCTTTGACCAAAAACGCCACTAAA
1 TCTTTAGCGGCGCTTTTACCTAAAACGCCGCTAAA
7734633 AAGGCCAACA
Statistics
Matches: 165, Mismatches: 22, Indels: 36
0.74 0.10 0.16
Matches are distributed among these distances:
40 2 0.01
41 5 0.03
42 64 0.39
43 84 0.51
44 9 0.05
45 1 0.01
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.25
Consensus pattern (42 bp):
TCTTTAGCGGCGCTTTTACCTAAAACGCCGCTAAAGACCCTA
Found at i:7734476 original size:128 final size:127
Alignment explanation
Indices: 7734384--7734632 Score: 331
Period size: 127 Copynumber: 2.0 Consensus size: 127
7734374 AAAGATCAGG
* * * * *
7734384 GTCTTTAGCGGCGTTTTTATCTAAAACGCCGCAATAGACCCTGATCTATAGCGGCA-TTTATACC
1 GTCTTTAGCGGCGCTTTCACCTAAAACCCCGCAATAGACCCTGATCTATAGCGGCACTTTCT--C
7734448 ACAAACGCCACTAAAGAACC-TATTCTTTAGCGGCGCTTTGACCCTAAACGCCACTAAAGACCTA
64 ACAAACGCCACTAAAGAACCTTA-TCTTTAGCGGCGCTTTGACCCTAAACGCCACTAAAGACCTA
* * * * *
7734512 TTCTTTAGCGGCGCTTTCCCCTCAAACCCCGCAATAGACTCTGATCTATAGCGGCGCTTTCTCAC
1 GTCTTTAGCGGCGCTTTCACCTAAAACCCCGCAATAGACCCTGATCTATAGCGGCACTTTCTCAC
* * **
7734577 AAACGCCGCTAAAGACCCTTATCTTTAGCGGCGCTTTGACCAAAAACGCCACTAAA
66 AAACGCCACTAAAGAACCTTATCTTTAGCGGCGCTTTGACCCTAAACGCCACTAAA
7734633 AAGGCCAACA
Statistics
Matches: 105, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
127 52 0.50
128 49 0.47
129 4 0.04
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.25
Consensus pattern (127 bp):
GTCTTTAGCGGCGCTTTCACCTAAAACCCCGCAATAGACCCTGATCTATAGCGGCACTTTCTCAC
AAACGCCACTAAAGAACCTTATCTTTAGCGGCGCTTTGACCCTAAACGCCACTAAAGACCTA
Found at i:7734524 original size:42 final size:42
Alignment explanation
Indices: 7734450--7734632 Score: 178
Period size: 42 Copynumber: 4.3 Consensus size: 42
7734440 TTTATACCAC
7734450 AAACGCCACTAAAGAACCTATTCTTTAGCGGCGCTTTGACCCT
1 AAACGCCACTAAAG-ACCTATTCTTTAGCGGCGCTTTGACCCT
*
7734493 AAACGCCACTAAAGACCTATTCTTTAGCGGCGCTTT-CCCCT
1 AAACGCCACTAAAGACCTATTCTTTAGCGGCGCTTTGACCCT
* * * ** *
7734534 CAAACCCCGC-AATAGACTCTGA-TCTATAGCGGCGCTTTCTCAC-
1 -AAACGCCACTAA-AGAC-CT-ATTCTTTAGCGGCGCTTTGACCCT
* **
7734577 AAACGCCGCTAAAGACCCT-TATCTTTAGCGGCGCTTTGACCAA
1 AAACGCCACTAAAGA-CCTAT-TCTTTAGCGGCGCTTTGACCCT
7734620 AAACGCCACTAAA
1 AAACGCCACTAAA
7734633 AAGGCCAACA
Statistics
Matches: 117, Mismatches: 13, Indels: 20
0.78 0.09 0.13
Matches are distributed among these distances:
41 6 0.05
42 62 0.53
43 46 0.39
44 3 0.03
ACGTcount: A:0.28, C:0.32, G:0.16, T:0.23
Consensus pattern (42 bp):
AAACGCCACTAAAGACCTATTCTTTAGCGGCGCTTTGACCCT
Found at i:7735060 original size:21 final size:21
Alignment explanation
Indices: 7734988--7735079 Score: 85
Period size: 21 Copynumber: 4.4 Consensus size: 21
7734978 TTTGACGCTG
**
7734988 CTCTGCTTCCCTCGCTTTAGC
1 CTCTGCTTCCCTCGCTGCAGC
*
7735009 CTCTGCTTCCCTCGCTACAGC
1 CTCTGCTTCCCTCGCTGCAGC
* * * *
7735030 CTGTACTTCTCTCGCTGCCGC
1 CTCTGCTTCCCTCGCTGCAGC
* * *
7735051 CTCTGCTTCTCTTGCTGCCGC
1 CTCTGCTTCCCTCGCTGCAGC
*
7735072 ATCTGCTT
1 CTCTGCTT
7735080 TAAGCTGCTG
Statistics
Matches: 60, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 60 1.00
ACGTcount: A:0.05, C:0.42, G:0.16, T:0.36
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCAGC
Found at i:7735140 original size:66 final size:66
Alignment explanation
Indices: 7735050--7735215 Score: 201
Period size: 66 Copynumber: 2.5 Consensus size: 66
7735040 CTCGCTGCCG
* * *
7735050 CCTCTGCTTCTCTTGCTGCCGCATCTGCTTTAAGCTGCT-GCTGGAGTTCTTCATA-CTTTCGTT
1 CCTCAGCTTCTCTCGCTGCTGCATCTGCTTTAAGCTG-TAGCTGGAGTTCTTCATATCTTT-GTT
7735113 GAA
64 GAA
* * * *
7735116 CCTCATCTTCTCTCGCTGCTGCATCTGCTTTCAGTTGTAGCTGGAGTTCTTCATATCTTTTTTGA
1 CCTCAGCTTCTCTCGCTGCTGCATCTGCTTTAAGCTGTAGCTGGAGTTCTTCATATCTTTGTTGA
7735181 A
66 A
* * * *
7735182 CCTCAGCTTCTCTCGATGTTGCCTCCGCTTTAAG
1 CCTCAGCTTCTCTCGCTGCTGCATCTGCTTTAAG
7735216 TTGTGTAATT
Statistics
Matches: 85, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
65 1 0.01
66 80 0.94
67 4 0.05
ACGTcount: A:0.13, C:0.29, G:0.18, T:0.40
Consensus pattern (66 bp):
CCTCAGCTTCTCTCGCTGCTGCATCTGCTTTAAGCTGTAGCTGGAGTTCTTCATATCTTTGTTGA
A
Found at i:7740652 original size:9 final size:9
Alignment explanation
Indices: 7740632--7740746 Score: 72
Period size: 9 Copynumber: 13.9 Consensus size: 9
7740622 AGCTACGTAT
7740632 GTTATGT-A
1 GTTATGTAA
7740640 -TTATGTAA
1 GTTATGTAA
*
7740648 GTTAT-TTA
1 GTTATGTAA
*
7740656 -TTATGAAA
1 GTTATGTAA
*
7740664 ATTATGTAA
1 GTTATGTAA
7740673 GTTATGTAA
1 GTTATGTAA
* *
7740682 TTTACG-AA
1 GTTATGTAA
*
7740690 -TAAT-TAAA
1 GTTATGT-AA
**
7740698 AATATGTAA
1 GTTATGTAA
7740707 GTTATGTAA
1 GTTATGTAA
7740716 G-T-TGTAA
1 GTTATGTAA
7740723 GTTATGTAA
1 GTTATGTAA
7740732 G-T-TGTAA
1 GTTATGTAA
7740739 GTTATGTA
1 GTTATGTA
7740747 TAATATTAAA
Statistics
Matches: 82, Mismatches: 13, Indels: 23
0.69 0.11 0.19
Matches are distributed among these distances:
7 24 0.29
8 12 0.15
9 45 0.55
10 1 0.01
ACGTcount: A:0.37, C:0.01, G:0.17, T:0.44
Consensus pattern (9 bp):
GTTATGTAA
Found at i:7740668 original size:16 final size:16
Alignment explanation
Indices: 7740633--7740671 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
7740623 GCTACGTATG
* *
7740633 TTATGTATTATGTAAG
1 TTATGTATTATGAAAA
*
7740649 TTATTTATTATGAAAA
1 TTATGTATTATGAAAA
7740665 TTATGTA
1 TTATGTA
7740672 AGTTATGTAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.36, C:0.00, G:0.13, T:0.51
Consensus pattern (16 bp):
TTATGTATTATGAAAA
Found at i:7740680 original size:34 final size:34
Alignment explanation
Indices: 7740633--7740718 Score: 95
Period size: 34 Copynumber: 2.6 Consensus size: 34
7740623 GCTACGTATG
*** *
7740633 TTATGT-A-TTATGTAAGTTATTTATTATGAAAA
1 TTATGTAAGTTATGTAAGTTACGAATAATGAAAA
* *
7740665 TTATGTAAGTTATGTAATTTACGAATAATTAAAA
1 TTATGTAAGTTATGTAAGTTACGAATAATGAAAA
*
7740699 ATATGTAAGTTATGTAAGTT
1 TTATGTAAGTTATGTAAGTT
7740719 GTAAGTTATG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
32 6 0.14
33 1 0.02
34 37 0.84
ACGTcount: A:0.40, C:0.01, G:0.14, T:0.45
Consensus pattern (34 bp):
TTATGTAAGTTATGTAAGTTACGAATAATGAAAA
Found at i:7740723 original size:16 final size:16
Alignment explanation
Indices: 7740702--7740746 Score: 90
Period size: 16 Copynumber: 2.8 Consensus size: 16
7740692 ATTAAAAATA
7740702 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
7740718 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
7740734 TGTAAGTTATGTA
1 TGTAAGTTATGTA
7740747 TAATATTAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.24, T:0.44
Consensus pattern (16 bp):
TGTAAGTTATGTAAGT
Found at i:7740806 original size:55 final size:56
Alignment explanation
Indices: 7740734--7741156 Score: 360
Period size: 56 Copynumber: 7.2 Consensus size: 56
7740724 TTATGTAAGT
7740734 TGTAAGTTATGTATAATATTAAATAACTAAGTTAT-TAATTTATGTATAATATTAA
1 TGTAAGTTATGTATAATATTAAATAACTAAGTTATGTAATTTATGTATAATATTAA
7740789 TGTAAGTTATGTATAATATTAAATAACTAAGTTATGTAATTTATGTATAATATTAA
1 TGTAAGTTATGTATAATATTAAATAACTAAGTTATGTAATTTATGTATAATATTAA
7740845 TGTAAGTTATGTATAATATTAAATAACTAAGTTATGTAATTT-TGTATAATATTAA
1 TGTAAGTTATGTATAATATTAAATAACTAAGTTATGTAATTTATGTATAATATTAA
* * * * * *
7740900 TGTATGTTATGTAATTTATGTATAATTAACTAATTAAGTTAAGTAATTTATGTATATTAAATAA
1 TGTAAGTTATGT-A--TA---AT-ATTAAATAACTAAGTTATGTAATTTATGTATAAT-ATTAA
* ** * *
7740964 -CTAAGTTATG--TAAT-TTATGT-ATTATA-TTAATGTAAGTTATGTATAATATTAAA
1 TGTAAGTTATGTATAATATTAAATAACTA-AGTT-ATGTAATTTATGTATAATATT-AA
* ** * * * *
7741017 TAACTAAGTTATGTAATTTCTGTATAATATTAATGTATGTTATGTAATTTATGTATAATTAACTA
1 T--GTAAGTTATGT-A-TAATAT-TAA-A-TAA-CTAAGTTATGTAATTTATGTATAA-T-ATTA
7741082 A
56 A
* *
7741083 T-TAAGTTATGTAATTTATGTATATTAACTAATTAAGTTATGTAATTTATGTATAATATTAA
1 TGTAAGTTATGT-A--TA---ATATTAAATAACTAAGTTATGTAATTTATGTATAATATTAA
7741144 TGTAAGTTATGTA
1 TGTAAGTTATGTA
7741157 ATATCTTATA
Statistics
Matches: 305, Mismatches: 29, Indels: 62
0.77 0.07 0.16
Matches are distributed among these distances:
52 8 0.03
53 22 0.07
55 61 0.20
56 73 0.24
58 4 0.01
60 2 0.01
61 9 0.03
62 35 0.11
63 49 0.16
64 10 0.03
65 17 0.06
66 11 0.04
67 4 0.01
ACGTcount: A:0.40, C:0.02, G:0.11, T:0.47
Consensus pattern (56 bp):
TGTAAGTTATGTATAATATTAAATAACTAAGTTATGTAATTTATGTATAATATTAA
Found at i:7740847 original size:22 final size:22
Alignment explanation
Indices: 7740822--7740866 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
7740812 TAACTAAGTT
*
7740822 ATGTAATTTATGTATAATATTA
1 ATGTAAGTTATGTATAATATTA
7740844 ATGTAAGTTATGTATAATATTA
1 ATGTAAGTTATGTATAATATTA
7740866 A
1 A
7740867 ATAACTAAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.42, C:0.00, G:0.11, T:0.47
Consensus pattern (22 bp):
ATGTAAGTTATGTATAATATTA
Found at i:7740854 original size:31 final size:31
Alignment explanation
Indices: 7740788--7741158 Score: 362
Period size: 31 Copynumber: 12.2 Consensus size: 31
7740778 TATAATATTA
* *
7740788 ATGTAAGTTATGTATAATATTAAATAACTAAGTT
1 ATGTAATTTATGTATAATATT-AAT--GTAAGTT
7740822 ATGTAATTTATGTATAATATTAATGTAAGTT
1 ATGTAATTTATGTATAATATTAATGTAAGTT
* * *
7740853 ATGT-A-TAATAT-TAA-A-TAA-CTAAGTT
1 ATGTAATTTATGTATAATATTAATGTAAGTT
*
7740878 ATGTAATTT-TGTATAATATTAATGTATGTT
1 ATGTAATTTATGTATAATATTAATGTAAGTT
*
7740908 ATGTAATTTATGTATAATTAACTAAT-TAAGTT
1 ATGTAATTTATGTATAA-T-ATTAATGTAAGTT
* * * *
7740940 AAGTAATTTATGTATATTAAATAA-CTAAGTT
1 ATGTAATTTATGTATAAT-ATTAATGTAAGTT
*
7740971 ATGTAATTTATGTATTATATTAATGTAAGTT
1 ATGTAATTTATGTATAATATTAATGTAAGTT
* * *
7741002 ATGT-A-TAATAT-TAA-A-TAA-CTAAGTT
1 ATGTAATTTATGTATAATATTAATGTAAGTT
* *
7741027 ATGTAATTTCTGTATAATATTAATGTATGTT
1 ATGTAATTTATGTATAATATTAATGTAAGTT
*
7741058 ATGTAATTTATGTATAATTAACTAAT-TAAGTT
1 ATGTAATTTATGTATAA-T-ATTAATGTAAGTT
* *
7741090 ATGTAATTTATGTATATTAACTAAT-TAAGTT
1 ATGTAATTTATGTATAAT-ATTAATGTAAGTT
7741121 ATGTAATTTATGTATAATATTAATGTAAGTT
1 ATGTAATTTATGTATAATATTAATGTAAGTT
7741152 ATGTAAT
1 ATGTAAT
7741159 ATCTTATATT
Statistics
Matches: 283, Mismatches: 34, Indels: 43
0.79 0.09 0.12
Matches are distributed among these distances:
25 20 0.07
26 10 0.04
27 9 0.03
28 9 0.03
29 12 0.04
30 28 0.10
31 119 0.42
32 43 0.15
33 13 0.05
34 20 0.07
ACGTcount: A:0.40, C:0.02, G:0.11, T:0.47
Consensus pattern (31 bp):
ATGTAATTTATGTATAATATTAATGTAAGTT
Found at i:7740996 original size:22 final size:22
Alignment explanation
Indices: 7740971--7741015 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
7740961 TAACTAAGTT
* *
7740971 ATGTAATTTATGTATTATATTA
1 ATGTAAGTTATGTATAATATTA
7740993 ATGTAAGTTATGTATAATATTA
1 ATGTAAGTTATGTATAATATTA
7741015 A
1 A
7741016 ATAACTAAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.40, C:0.00, G:0.11, T:0.49
Consensus pattern (22 bp):
ATGTAAGTTATGTATAATATTA
Found at i:7741078 original size:119 final size:119
Alignment explanation
Indices: 7740905--7741125 Score: 315
Period size: 119 Copynumber: 1.9 Consensus size: 119
7740895 ATTAATGTAT
7740905 GTTATGTAATTTATGTATAATTAACTAATTAAGTTAAGTAATTTATGTATATTAAATAACTAAGT
1 GTTATGTAATTTATGTATAATTAACTAATTAAGTTAAGTAATTTATGTATATTAAATAACTAAGT
*
7740970 TATGTAATTTATG--TATTATATTAATGTAAGTTATGTATAATATTAAATAACTAA
66 TATGTAATTTATGTATATTA-ACTAAT-TAAGTTATGTATAATATTAAATAACTAA
* * * * * *
7741024 GTTATGTAATTTCTGTATAA-T-ATTAATGTATGTTATGTAATTTATGTATAATTAACTAATTAA
1 GTTATGTAATTTATGTATAATTAACTAAT-TAAGTTAAGTAATTTATGTAT-ATTAAATAACTAA
7741087 GTTATGTAATTTATGTATATTAACTAATTAAGTTATGTA
64 GTTATGTAATTTATGTATATTAACTAATTAAGTTATGTA
7741126 ATTTATGTAT
Statistics
Matches: 91, Mismatches: 7, Indels: 8
0.86 0.07 0.08
Matches are distributed among these distances:
117 5 0.05
118 20 0.22
119 56 0.62
120 5 0.05
121 5 0.05
ACGTcount: A:0.39, C:0.03, G:0.11, T:0.47
Consensus pattern (119 bp):
GTTATGTAATTTATGTATAATTAACTAATTAAGTTAAGTAATTTATGTATATTAAATAACTAAGT
TATGTAATTTATGTATATTAACTAATTAAGTTATGTATAATATTAAATAACTAA
Found at i:7741124 original size:150 final size:149
Alignment explanation
Indices: 7740804--7741156 Score: 661
Period size: 150 Copynumber: 2.4 Consensus size: 149
7740794 GTTATGTATA
7740804 ATATTAAATAACTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTATAATATTAAAT
1 ATATTAAATAACTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTATAATATTAAAT
7740869 AACTAAGTTATGTAATTTTGTATAATATTAATGTATGTTATGTAATTTATGTATAATTAACTAAT
66 AACTAAGTTATGTAATTTTGTATAATATTAATGTATGTTATGTAATTTATGTATAATTAACTAAT
7740934 TAAGTTAAGTAATTTATGT
131 TAAGTTAAGTAATTTATGT
*
7740953 ATATTAAATAACTAAGTTATGTAATTTATGTATTATATTAATGTAAGTTATGTATAATATTAAAT
1 ATATTAAATAACTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTATAATATTAAAT
7741018 AACTAAGTTATGTAATTTCTGTATAATATTAATGTATGTTATGTAATTTATGTATAATTAACTAA
66 AACTAAGTTATGTAATTT-TGTATAATATTAATGTATGTTATGTAATTTATGTATAATTAACTAA
*
7741083 TTAAGTTATGTAATTTATGT
130 TTAAGTTAAGTAATTTATGT
* *
7741103 ATATTAACTAATTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTA
1 ATATTAAATAACTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTA
7741157 ATATCTTATA
Statistics
Matches: 198, Mismatches: 5, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
149 82 0.41
150 116 0.59
ACGTcount: A:0.40, C:0.02, G:0.11, T:0.47
Consensus pattern (149 bp):
ATATTAAATAACTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTATAATATTAAAT
AACTAAGTTATGTAATTTTGTATAATATTAATGTATGTTATGTAATTTATGTATAATTAACTAAT
TAAGTTAAGTAATTTATGT
Found at i:7748160 original size:9 final size:9
Alignment explanation
Indices: 7748140--7748254 Score: 72
Period size: 9 Copynumber: 13.9 Consensus size: 9
7748130 AGCTACGTAT
7748140 GTTATGT-A
1 GTTATGTAA
7748148 -TTATGTAA
1 GTTATGTAA
*
7748156 GTTAT-TTA
1 GTTATGTAA
*
7748164 -TTATGAAA
1 GTTATGTAA
*
7748172 ATTATGTAA
1 GTTATGTAA
7748181 GTTATGTAA
1 GTTATGTAA
* *
7748190 TTTACG-AA
1 GTTATGTAA
*
7748198 -TAAT-TAAA
1 GTTATGT-AA
**
7748206 AATATGTAA
1 GTTATGTAA
7748215 GTTATGTAA
1 GTTATGTAA
7748224 G-T-TGTAA
1 GTTATGTAA
7748231 GTTATGTAA
1 GTTATGTAA
7748240 G-T-TGTAA
1 GTTATGTAA
7748247 GTTATGTA
1 GTTATGTA
7748255 TAATATTAAA
Statistics
Matches: 82, Mismatches: 13, Indels: 23
0.69 0.11 0.19
Matches are distributed among these distances:
7 24 0.29
8 12 0.15
9 45 0.55
10 1 0.01
ACGTcount: A:0.37, C:0.01, G:0.17, T:0.44
Consensus pattern (9 bp):
GTTATGTAA
Found at i:7748176 original size:16 final size:16
Alignment explanation
Indices: 7748141--7748179 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
7748131 GCTACGTATG
* *
7748141 TTATGTATTATGTAAG
1 TTATGTATTATGAAAA
*
7748157 TTATTTATTATGAAAA
1 TTATGTATTATGAAAA
7748173 TTATGTA
1 TTATGTA
7748180 AGTTATGTAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.36, C:0.00, G:0.13, T:0.51
Consensus pattern (16 bp):
TTATGTATTATGAAAA
Found at i:7748188 original size:34 final size:34
Alignment explanation
Indices: 7748141--7748226 Score: 95
Period size: 34 Copynumber: 2.6 Consensus size: 34
7748131 GCTACGTATG
*** *
7748141 TTATGT-A-TTATGTAAGTTATTTATTATGAAAA
1 TTATGTAAGTTATGTAAGTTACGAATAATGAAAA
* *
7748173 TTATGTAAGTTATGTAATTTACGAATAATTAAAA
1 TTATGTAAGTTATGTAAGTTACGAATAATGAAAA
*
7748207 ATATGTAAGTTATGTAAGTT
1 TTATGTAAGTTATGTAAGTT
7748227 GTAAGTTATG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
32 6 0.14
33 1 0.02
34 37 0.84
ACGTcount: A:0.40, C:0.01, G:0.14, T:0.45
Consensus pattern (34 bp):
TTATGTAAGTTATGTAAGTTACGAATAATGAAAA
Found at i:7748231 original size:16 final size:16
Alignment explanation
Indices: 7748210--7748254 Score: 90
Period size: 16 Copynumber: 2.8 Consensus size: 16
7748200 ATTAAAAATA
7748210 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
7748226 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
7748242 TGTAAGTTATGTA
1 TGTAAGTTATGTA
7748255 TAATATTAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.24, T:0.44
Consensus pattern (16 bp):
TGTAAGTTATGTAAGT
Found at i:7748309 original size:47 final size:52
Alignment explanation
Indices: 7748257--7748415 Score: 141
Period size: 59 Copynumber: 2.9 Consensus size: 52
7748247 GTTATGTATA
*
7748257 ATATTAAATAACTAAG-TATTTAATTTATGTA-TTAATA-TTAATGTAAGTTATTAT
1 ATATTAAATAACTAAGTTATGTAATTTATGTATTTAATATTTAATGTAAG----T-T
7748311 AATATTAAATAACTAAGTTATGTAATTTATGTATTTAATATTTAATGTAAGTTATGTAT
1 -ATATTAAATAACTAAGTTATGTAATTTATGTATTTAATATTTAATGT-A---A-GT-T
*
7748370 AATATTAAATAACTAAGTTATGTAATTTCTGTA--TAATA-TTAATGTA
1 -ATATTAAATAACTAAGTTATGTAATTTATGTATTTAATATTTAATGTA
7748416 TGTTTTGTAA
Statistics
Matches: 94, Mismatches: 2, Indels: 16
0.84 0.02 0.14
Matches are distributed among these distances:
55 17 0.18
56 21 0.22
57 11 0.12
58 7 0.07
59 36 0.38
62 1 0.01
63 1 0.01
ACGTcount: A:0.42, C:0.03, G:0.09, T:0.47
Consensus pattern (52 bp):
ATATTAAATAACTAAGTTATGTAATTTATGTATTTAATATTTAATGTAAGTT
Found at i:7748383 original size:59 final size:57
Alignment explanation
Indices: 7748242--7748424 Score: 291
Period size: 56 Copynumber: 3.2 Consensus size: 57
7748232 TTATGTAAGT
*
7748242 TGTAAGTTATGTATAATATTAAATAACTAAG-TATTTAATTTATGTATTAATATTAA
1 TGTAAGTTATGTATAATATTAAATAACTAAGTTATGTAATTTATGTATTAATATTAA
7748298 TGTAAGTTAT-TATAATATTAAATAACTAAGTTATGTAATTTATGTATTTAATATTTAA
1 TGTAAGTTATGTATAATATTAAATAACTAAGTTATGTAATTTATGTA-TTAATA-TTAA
*
7748356 TGTAAGTTATGTATAATATTAAATAACTAAGTTATGTAATTTCTGTA-TAATATTAA
1 TGTAAGTTATGTATAATATTAAATAACTAAGTTATGTAATTTATGTATTAATATTAA
* *
7748412 TGTATGTTTTGTA
1 TGTAAGTTATGTA
7748425 ATTTATGTAT
Statistics
Matches: 119, Mismatches: 4, Indels: 8
0.91 0.03 0.06
Matches are distributed among these distances:
55 20 0.17
56 39 0.33
57 11 0.09
58 14 0.12
59 35 0.29
ACGTcount: A:0.40, C:0.02, G:0.10, T:0.48
Consensus pattern (57 bp):
TGTAAGTTATGTATAATATTAAATAACTAAGTTATGTAATTTATGTATTAATATTAA
Found at i:7748461 original size:114 final size:114
Alignment explanation
Indices: 7748242--7748461 Score: 286
Period size: 114 Copynumber: 1.9 Consensus size: 114
7748232 TTATGTAAGT
*
7748242 TGTAAGTTATGTATAATATTAAATAACTAAGTATTTAATTTATGTATTAATATTAATGTAAGTTA
1 TGTAAGTTATGTATAATATTAAATAACTAAGTATGTAATTTATGTATTAATATTAATGTAAGTTA
* * * *
7748307 TTATAATATTAAATAACTAAGTTATGTAATTTATGTATTTAATATTTAA
66 TTATAATATTAAATAACTAACTAATGTAAGTTAAGTATTTAATATTTAA
* *
7748356 TGTAAGTTATGTATAATATTAAATAACTAAGTTATGTAATTTCTGTA-TAATATTAATGTATGTT
1 TGTAAGTTATGTATAATATTAAATAACTAAG-TATGTAATTTATGTATTAATATTAATGTAAGTT
* * *
7748420 -TTGTAAT-TTATGTATAATTAACTAAT-TAAGTTAAGTAATTTA
65 ATTATAATATTA--AATAACTAACTAATGTAAGTTAAGT-ATTTA
7748462 TGTATATTAA
Statistics
Matches: 92, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
112 3 0.03
113 14 0.15
114 62 0.67
115 13 0.14
ACGTcount: A:0.40, C:0.02, G:0.10, T:0.47
Consensus pattern (114 bp):
TGTAAGTTATGTATAATATTAAATAACTAAGTATGTAATTTATGTATTAATATTAATGTAAGTTA
TTATAATATTAAATAACTAACTAATGTAAGTTAAGTATTTAATATTTAA
Found at i:7748481 original size:31 final size:31
Alignment explanation
Indices: 7748312--7748673 Score: 252
Period size: 31 Copynumber: 11.8 Consensus size: 31
7748302 AGTTATTATA
*
7748312 ATATTAAATAACTAAGTTATGTAATTTATGT
1 ATATTAAATAATTAAGTTATGTAATTTATGT
* * * * *
7748343 AT-TT-AATATTTAA-TGTAAGTTATGTAT-A
1 ATATTAAATAATTAAGT-TATGTAATTTATGT
* *
7748371 ATATTAAATAACTAAGTTATGTAATTTCTGT
1 ATATTAAATAATTAAGTTATGTAATTTATGT
* * * *
7748402 ATAAT-ATTAATGTATGTTTTGTAATTTATGT
1 ATATTAAATAAT-TAAGTTATGTAATTTATGT
* *
7748433 ATAATTAACTAATTAAGTTAAGTAATTTATGT
1 AT-ATTAAATAATTAAGTTATGTAATTTATGT
*
7748465 ATATTAAATAACTAAGTTATGTAATTTAT-T
1 ATATTAAATAATTAAGTTATGTAATTTATGT
* *
7748495 GTATT--AT-ATT-A---ATGTAAGCTTATGT
1 ATATTAAATAATTAAGTTATGTAA-TTTATGT
* * *
7748520 ATAATAAATAACTAAGAAGTTATGTAATTTCTGT
1 ATATTAAATAA-T--TAAGTTATGTAATTTATGT
* ** *
7748554 ATAATATTTAATGTATG-TATGTAATTTATGT
1 ATATTAAATAAT-TAAGTTATGTAATTTATGT
*
7748585 ATAATTAACTAATTAAAGTTATGTAATTTTATGT
1 AT-ATTAAATAATT-AAGTTATGTAA-TTTATGT
*
7748619 ATATTAACTAATTAAGTTATGTAATTTATGT
1 ATATTAAATAATTAAGTTATGTAATTTATGT
* *
7748650 ATA--ATATTATGTAAGTTATGTAAT
1 ATATTAAATAAT-TAAGTTATGTAAT
7748674 ATCTTTATAT
Statistics
Matches: 258, Mismatches: 48, Indels: 51
0.72 0.13 0.14
Matches are distributed among these distances:
23 6 0.02
24 4 0.02
25 4 0.02
26 1 0.00
27 4 0.02
28 6 0.02
29 23 0.09
30 39 0.15
31 75 0.29
32 43 0.17
33 24 0.09
34 23 0.09
35 6 0.02
ACGTcount: A:0.40, C:0.03, G:0.11, T:0.47
Consensus pattern (31 bp):
ATATTAAATAATTAAGTTATGTAATTTATGT
Found at i:7748520 original size:55 final size:56
Alignment explanation
Indices: 7748459--7748568 Score: 152
Period size: 58 Copynumber: 1.9 Consensus size: 56
7748449 GTTAAGTAAT
* * *
7748459 TTATGTATATTAAATAACT-AAGTTATGTAATTTATTGTATTATA-TTAATGTAAGC
1 TTATGTATAATAAATAACTAAAGTTATGTAATTT-CTGTATAATATTTAATGTAAGC
7748514 TTATGTATAATAAATAACTAAGAAGTTATGTAATTTCTGTATAATATTTAATGTA
1 TTATGTATAATAAATAACT-A-AAGTTATGTAATTTCTGTATAATATTTAATGTA
7748569 TGTATGTAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
55 18 0.38
57 8 0.17
58 22 0.46
ACGTcount: A:0.40, C:0.04, G:0.11, T:0.45
Consensus pattern (56 bp):
TTATGTATAATAAATAACTAAAGTTATGTAATTTCTGTATAATATTTAATGTAAGC
Found at i:7748547 original size:152 final size:152
Alignment explanation
Indices: 7748312--7748671 Score: 550
Period size: 152 Copynumber: 2.4 Consensus size: 152
7748302 AGTTATTATA
*
7748312 ATATTAAATAACTAAGTTATGTAATTTATGTATTTAATATTTAATGTAAGTTATGTATAATATTA
1 ATATTAAATAACTAAGTTATGTAATTTATGTA-TT-ATA-TTAATGTAAGTTATGTATAATAATA
* *
7748377 AATAACTAAGTTATGTAATTTCTGTATAATA-TTAATGTATGTTTTGTAATTTATGTATAATTAA
63 AATAACGAAGTTATGTAATTTCTGTATAATATTTAATGTATG-TATGTAATTTATGTATAATTAA
7748441 CTAATT-AAGTTAAGTAA-TTTATGT
127 CTAATTAAAGTTAAGTAATTTTATGT
7748465 ATATTAAATAACTAAGTTATGTAATTTATTGTATTATATTAATGTAAGCTTATGTATAATAAATA
1 ATATTAAATAACTAAGTTATGTAATTTA-TGTATTATATTAATGTAAG-TTATGTATAAT-AATA
*
7748530 ACTAA-GAAGTTATGTAATTTCTGTATAATATTTAATGTATGTATGTAATTTATGTATAATTAAC
63 AATAACGAAGTTATGTAATTTCTGTATAATATTTAATGTATGTATGTAATTTATGTATAATTAAC
*
7748594 TAATTAAAGTTATGTAATTTTATGT
128 TAATTAAAGTTAAGTAATTTTATGT
* * *
7748619 ATATTAACTAATTAAGTTATGTAATTTATGTATAATATT-ATGTAAGTTATGTA
1 ATATTAAATAACTAAGTTATGTAATTTATGTATTATATTAATGTAAGTTATGTA
7748672 ATATCTTTAT
Statistics
Matches: 193, Mismatches: 8, Indels: 14
0.90 0.04 0.07
Matches are distributed among these distances:
151 17 0.09
152 72 0.37
153 67 0.35
154 37 0.19
ACGTcount: A:0.39, C:0.03, G:0.11, T:0.47
Consensus pattern (152 bp):
ATATTAAATAACTAAGTTATGTAATTTATGTATTATATTAATGTAAGTTATGTATAATAATAAAT
AACGAAGTTATGTAATTTCTGTATAATATTTAATGTATGTATGTAATTTATGTATAATTAACTAA
TTAAAGTTAAGTAATTTTATGT
Found at i:7748620 original size:65 final size:66
Alignment explanation
Indices: 7748514--7748654 Score: 173
Period size: 65 Copynumber: 2.2 Consensus size: 66
7748504 TAATGTAAGC
* ** *
7748514 TTATGTATAA-TAAATAACTAAGAAGTTATGTAATTTCTGTATAATATTTAATGTATG-TATGTA
1 TTATGTATAATTAAATAACTAAGAAGTTATGTAATTTATGTATAATAACTAAT-TAAGTTATGTA
7748577 AT
65 AT
* * *
7748579 TTATGTATAATTAACTAA-TTA-AAGTTATGTAATTTTATGTATATTAACTAATTAAGTTATGTA
1 TTATGTATAATTAAATAACTAAGAAGTTATGTAA-TTTATGTATAATAACTAATTAAGTTATGTA
7748642 AT
65 AT
7748644 TTATGTATAAT
1 TTATGTATAAT
7748655 ATTATGTAAG
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
64 14 0.21
65 46 0.70
66 6 0.09
ACGTcount: A:0.40, C:0.03, G:0.11, T:0.47
Consensus pattern (66 bp):
TTATGTATAATTAAATAACTAAGAAGTTATGTAATTTATGTATAATAACTAATTAAGTTATGTAA
T
Found at i:7749998 original size:21 final size:21
Alignment explanation
Indices: 7749928--7750016 Score: 94
Period size: 20 Copynumber: 4.4 Consensus size: 21
7749918 TTTGACGCTG
* *
7749928 CTCTGCTTCCCTCGCT-TAGC
1 CTCTGCTTCTCTCGCTGCAGC
7749948 CTCTGCTTC-CTCGCTGCAGC
1 CTCTGCTTCTCTCGCTGCAGC
* *
7749968 CT-TACTTCTCTCGCTGCCGC
1 CTCTGCTTCTCTCGCTGCAGC
* *
7749988 CTCTGCTTCTCTTGCTGCCGC
1 CTCTGCTTCTCTCGCTGCAGC
*
7750009 ATCTGCTT
1 CTCTGCTT
7750017 TAAGCTTGCT
Statistics
Matches: 60, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
19 11 0.18
20 26 0.43
21 23 0.38
ACGTcount: A:0.04, C:0.43, G:0.17, T:0.36
Consensus pattern (21 bp):
CTCTGCTTCTCTCGCTGCAGC
Found at i:7750120 original size:65 final size:63
Alignment explanation
Indices: 7749987--7750153 Score: 203
Period size: 65 Copynumber: 2.6 Consensus size: 63
7749977 CTCGCTGCCG
* * * *
7749987 CCTCTGCTTCTCTTGCTGCCGCATCTGCTTTAAGCT-TGCTGGAGTTCTTCTACTTTCGTTGAA
1 CCTCAGCTTCTCTCGCTGCTGCATCTGCTTTAAGTTGTGCTGGAGTTCTTCTACTTTC-TTGAA
*
7750050 CCTCAGCTTCTCTCGCTGCTGCATCTGCTTTCAGTTGTAGCTGGAGTTCTTCATATCTTT-TTGA
1 CCTCAGCTTCTCTCGCTGCTGCATCTGCTTTAAGTTGT-GCTGGAGTTCTTC-TA-CTTTCTTGA
7750114 A
63 A
* * * *
7750115 CCTCAGCTTCTCTCGATGTTGCCTCCGCTTTAAGTTGTG
1 CCTCAGCTTCTCTCGCTGCTGCATCTGCTTTAAGTTGTG
7750154 TAATTGCTCA
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
63 31 0.34
64 2 0.02
65 51 0.57
66 2 0.02
67 4 0.04
ACGTcount: A:0.12, C:0.28, G:0.19, T:0.41
Consensus pattern (63 bp):
CCTCAGCTTCTCTCGCTGCTGCATCTGCTTTAAGTTGTGCTGGAGTTCTTCTACTTTCTTGAA
Found at i:7755568 original size:9 final size:9
Alignment explanation
Indices: 7755548--7755662 Score: 72
Period size: 9 Copynumber: 13.9 Consensus size: 9
7755538 AGCTACGTAT
7755548 GTTATGT-A
1 GTTATGTAA
7755556 -TTATGTAA
1 GTTATGTAA
*
7755564 GTTAT-TTA
1 GTTATGTAA
*
7755572 -TTATGAAA
1 GTTATGTAA
*
7755580 ATTATGTAA
1 GTTATGTAA
7755589 GTTATGTAA
1 GTTATGTAA
* *
7755598 TTTACG-AA
1 GTTATGTAA
*
7755606 -TAAT-TAAA
1 GTTATGT-AA
**
7755614 AATATGTAA
1 GTTATGTAA
7755623 GTTATGTAA
1 GTTATGTAA
7755632 G-T-TGTAA
1 GTTATGTAA
7755639 GTTATGTAA
1 GTTATGTAA
7755648 G-T-TGTAA
1 GTTATGTAA
7755655 GTTATGTA
1 GTTATGTA
7755663 TAATATTAAA
Statistics
Matches: 82, Mismatches: 13, Indels: 23
0.69 0.11 0.19
Matches are distributed among these distances:
7 24 0.29
8 12 0.15
9 45 0.55
10 1 0.01
ACGTcount: A:0.37, C:0.01, G:0.17, T:0.44
Consensus pattern (9 bp):
GTTATGTAA
Found at i:7755584 original size:16 final size:16
Alignment explanation
Indices: 7755549--7755587 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
7755539 GCTACGTATG
* *
7755549 TTATGTATTATGTAAG
1 TTATGTATTATGAAAA
*
7755565 TTATTTATTATGAAAA
1 TTATGTATTATGAAAA
7755581 TTATGTA
1 TTATGTA
7755588 AGTTATGTAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.36, C:0.00, G:0.13, T:0.51
Consensus pattern (16 bp):
TTATGTATTATGAAAA
Found at i:7755596 original size:34 final size:34
Alignment explanation
Indices: 7755549--7755634 Score: 95
Period size: 34 Copynumber: 2.6 Consensus size: 34
7755539 GCTACGTATG
*** *
7755549 TTATGT-A-TTATGTAAGTTATTTATTATGAAAA
1 TTATGTAAGTTATGTAAGTTACGAATAATGAAAA
* *
7755581 TTATGTAAGTTATGTAATTTACGAATAATTAAAA
1 TTATGTAAGTTATGTAAGTTACGAATAATGAAAA
*
7755615 ATATGTAAGTTATGTAAGTT
1 TTATGTAAGTTATGTAAGTT
7755635 GTAAGTTATG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
32 6 0.14
33 1 0.02
34 37 0.84
ACGTcount: A:0.40, C:0.01, G:0.14, T:0.45
Consensus pattern (34 bp):
TTATGTAAGTTATGTAAGTTACGAATAATGAAAA
Found at i:7755639 original size:16 final size:16
Alignment explanation
Indices: 7755618--7755662 Score: 90
Period size: 16 Copynumber: 2.8 Consensus size: 16
7755608 ATTAAAAATA
7755618 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
7755634 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
7755650 TGTAAGTTATGTA
1 TGTAAGTTATGTA
7755663 TAATATTAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.24, T:0.44
Consensus pattern (16 bp):
TGTAAGTTATGTAAGT
Found at i:7755715 original size:31 final size:31
Alignment explanation
Indices: 7755642--7756071 Score: 367
Period size: 31 Copynumber: 14.5 Consensus size: 31
7755632 GTTGTAAGTT
*
7755642 ATGTAAG-T-TGTAAGTTATGTATAATATTAA
1 ATGTAAGTTATGTAATTTATGTATAATATT-A
* *
7755672 ATAACTAAGTTATTTAATTTATGTATAATATTA
1 AT--GTAAGTTATGTAATTTATGTATAATATTA
* *
7755705 ATGTAAGTTATGT-A-TAATAT-TAA-A-TA
1 ATGTAAGTTATGTAATTTATGTATAATATTA
*
7755731 A-CTAAGTTATGTAATTTATGTATAATATTA
1 ATGTAAGTTATGTAATTTATGTATAATATTA
*
7755761 ATGTAAGTTATGT-A--TA-ATATAA-A-TA
1 ATGTAAGTTATGTAATTTATGTATAATATTA
* *
7755786 A-CTAAGTTATGTAATTTCTGTATAATATTA
1 ATGTAAGTTATGTAATTTATGTATAATATTA
* * *
7755816 ATGTATGTTATGTAATTTATGTATATTAACTA
1 ATGTAAGTTATGTAATTTATGTATAAT-ATTA
* * *
7755848 AT-TAAGTTAAGTAATTTATGTATATTAAATA
1 ATGTAAGTTATGTAATTTATGTATAAT-ATTA
* *
7755879 A-CTAAGTTATGTAATTTATGTATTATATTA
1 ATGTAAGTTATGTAATTTATGTATAATATTA
* *
7755909 ATGTAAGTTATGT-A--TA---ATATTAATA
1 ATGTAAGTTATGTAATTTATGTATAATATTA
* *
7755934 A-CTAAGTTATGTAATTTCTGTATAATATTA
1 ATGTAAGTTATGTAATTTATGTATAATATTA
* *
7755964 ATGTATGTTATGTAATTTATGTATAATTAACTA
1 ATGTAAGTTATGTAATTTATGTATAA-T-ATTA
* *
7755997 AT-TAAGTTATGTAATTTATGTATATTAACTA
1 ATGTAAGTTATGTAATTTATGTATAAT-ATTA
7756028 AT-TAAGTTATGTAATTTATG--TAATATTA
1 ATGTAAGTTATGTAATTTATGTATAATATTA
7756056 ATGTAAGTTATGTAAT
1 ATGTAAGTTATGTAAT
7756072 ATCTTATATT
Statistics
Matches: 327, Mismatches: 43, Indels: 61
0.76 0.10 0.14
Matches are distributed among these distances:
24 20 0.06
25 22 0.07
26 5 0.02
27 12 0.04
28 20 0.06
29 22 0.07
30 23 0.07
31 145 0.44
32 31 0.09
33 9 0.03
34 18 0.06
ACGTcount: A:0.40, C:0.02, G:0.11, T:0.47
Consensus pattern (31 bp):
ATGTAAGTTATGTAATTTATGTATAATATTA
Found at i:7755723 original size:56 final size:56
Alignment explanation
Indices: 7755650--7756069 Score: 349
Period size: 56 Copynumber: 7.2 Consensus size: 56
7755640 TTATGTAAGT
*
7755650 TGTAAGTTATGTATAATATTAAATAACTAAGTTATTTAATTTATGTATAATATTAA
1 TGTAAGTTATGTATAATATTAAATAACTAAGTTATGTAATTTATGTATAATATTAA
7755706 TGTAAGTTATGTATAATATTAAATAACTAAGTTATGTAATTTATGTATAATATTAA
1 TGTAAGTTATGTATAATATTAAATAACTAAGTTATGTAATTTATGTATAATATTAA
*
7755762 TGTAAGTTATGTATAATA-TAAATAACTAAGTTATGTAATTTCTGTATAATATTAA
1 TGTAAGTTATGTATAATATTAAATAACTAAGTTATGTAATTTATGTATAATATTAA
* * * * * *
7755817 TGTATGTTATGTAATTTATGTATATTAACTAATTAAGTTAAGTAATTTATGTATATTAAATAA
1 TGTAAGTTATGT-A--TA---ATATTAAATAACTAAGTTATGTAATTTATGTATAAT-ATTAA
* * * * *
7755880 -CTAAGTTATGTAATTTATGTATTATATTAATGTAAGTTATGT-ATAATAT-TAATAACTAAGTT
1 TGTAAGTTATGT-A--TA-ATATTA-AATAA-CTAAGTTATGTAAT-TTATGT-ATAA-T-A-TT
7755942 -A
55 AA
* * * * *
7755943 TGTAATTTCTGTATAATATT-AAT--GTATGTTATGTAATTTATGTATAATTAACTAA
1 TGTAAGTTATGTATAATATTAAATAACTAAGTTATGTAATTTATGTATAA-T-ATTAA
* *
7755998 T-TAAGTTATGTAATTTATGTATATTAACTAATTAAGTTATGTAATTTATG--TAATATTAA
1 TGTAAGTTATGT-A--TA---ATATTAAATAACTAAGTTATGTAATTTATGTATAATATTAA
7756057 TGTAAGTTATGTA
1 TGTAAGTTATGTA
7756070 ATATCTTATA
Statistics
Matches: 303, Mismatches: 33, Indels: 53
0.78 0.08 0.14
Matches are distributed among these distances:
54 9 0.03
55 70 0.23
56 77 0.25
57 2 0.01
58 4 0.01
59 6 0.02
60 26 0.09
61 17 0.06
62 57 0.19
63 26 0.09
64 9 0.03
ACGTcount: A:0.40, C:0.02, G:0.11, T:0.47
Consensus pattern (56 bp):
TGTAAGTTATGTATAATATTAAATAACTAAGTTATGTAATTTATGTATAATATTAA
Found at i:7755764 original size:22 final size:22
Alignment explanation
Indices: 7755739--7755798 Score: 75
Period size: 22 Copynumber: 2.6 Consensus size: 22
7755729 TAACTAAGTT
*
7755739 ATGTAATTTATGTATAATATTA
1 ATGTAAGTTATGTATAATATTA
*
7755761 ATGTAAGTTATGTATAATATAA
1 ATGTAAGTTATGTATAATATTA
*
7755783 ATAACTAAGTTATGTA
1 AT--GTAAGTTATGTA
7755799 ATTTCTGTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
22 22 0.67
24 11 0.33
ACGTcount: A:0.43, C:0.02, G:0.12, T:0.43
Consensus pattern (22 bp):
ATGTAAGTTATGTATAATATTA
Found at i:7755895 original size:148 final size:149
Alignment explanation
Indices: 7755721--7756069 Score: 632
Period size: 148 Copynumber: 2.4 Consensus size: 149
7755711 GTTATGTATA
7755721 ATATTAAATAACTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTATAATATAAATA
1 ATATTAAATAACTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTATAATATAAATA
7755786 ACTAAGTTATGTAATTTCTGTATAATATTAATGTATGTTATGTAATTTATGTAT-ATTAACTAAT
66 ACTAAGTTATGTAATTTCTGTATAATATTAATGTATGTTATGTAATTTATGTATAATTAACTAAT
7755850 TAAGTTAAGTAATTTATGT
131 TAAGTTAAGTAATTTATGT
* *
7755869 ATATTAAATAACTAAGTTATGTAATTTATGTATTATATTAATGTAAGTTATGTATAATATTAATA
1 ATATTAAATAACTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTATAATATAAATA
7755934 ACTAAGTTATGTAATTTCTGTATAATATTAATGTATGTTATGTAATTTATGTATAATTAACTAAT
66 ACTAAGTTATGTAATTTCTGTATAATATTAATGTATGTTATGTAATTTATGTATAATTAACTAAT
*
7755999 TAAGTTATGTAATTTATGT
131 TAAGTTAAGTAATTTATGT
* *
7756018 ATATTAACTAATTAAGTTATGTAATTTATG--TAATATTAATGTAAGTTATGTA
1 ATATTAAATAACTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTA
7756070 ATATCTTATA
Statistics
Matches: 194, Mismatches: 6, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
147 21 0.11
148 117 0.60
149 56 0.29
ACGTcount: A:0.40, C:0.03, G:0.11, T:0.47
Consensus pattern (149 bp):
ATATTAAATAACTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTATAATATAAATA
ACTAAGTTATGTAATTTCTGTATAATATTAATGTATGTTATGTAATTTATGTATAATTAACTAAT
TAAGTTAAGTAATTTATGT
Found at i:7755912 original size:22 final size:22
Alignment explanation
Indices: 7755887--7755946 Score: 75
Period size: 22 Copynumber: 2.6 Consensus size: 22
7755877 TAACTAAGTT
* *
7755887 ATGTAATTTATGTATTATATTA
1 ATGTAAGTTATGTATAATATTA
7755909 ATGTAAGTTATGTATAATATTA
1 ATGTAAGTTATGTATAATATTA
*
7755931 ATAACTAAGTTATGTA
1 AT--GTAAGTTATGTA
7755947 ATTTCTGTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
22 22 0.67
24 11 0.33
ACGTcount: A:0.40, C:0.02, G:0.12, T:0.47
Consensus pattern (22 bp):
ATGTAAGTTATGTATAATATTA
Found at i:7755944 original size:55 final size:55
Alignment explanation
Indices: 7755854--7756040 Score: 186
Period size: 55 Copynumber: 3.3 Consensus size: 55
7755844 ACTAATTAAG
* *
7755854 TTAA-GTAATTTATGTAT-AT-TAAATAACTAAGTTATGTAATTTATGTATTATA
1 TTAATGTAAGTTATGTATAATATTAATAACTAAGTTATGTAATTTATGTATTATA
* *
7755906 TTAATGTAAGTTATGTATAATATTAATAACTAAGTTATGTAATTTCTGTATAATA
1 TTAATGTAAGTTATGTATAATATTAATAACTAAGTTATGTAATTTATGTATTATA
* *
7755961 TTAATGTATGTTATGTAATTTATGTATAATTAACTAATTAAGTTATGTAATTTATGTA-TATTAA
1 TTAATGTAAGTTATGT-A--TA---AT-ATTAA-TAACTAAGTTATGTAATTTATGTATTA-T-A
*
7756025 CTAAT-TAAGTTATGTA
1 TTAATGTAAGTTATGTA
7756041 ATTTATGTAA
Statistics
Matches: 112, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
52 4 0.04
53 12 0.11
54 2 0.02
55 45 0.40
56 1 0.01
58 2 0.02
61 2 0.02
62 7 0.06
63 32 0.29
64 5 0.04
ACGTcount: A:0.39, C:0.03, G:0.11, T:0.48
Consensus pattern (55 bp):
TTAATGTAAGTTATGTATAATATTAATAACTAAGTTATGTAATTTATGTATTATA
Found at i:7755983 original size:9 final size:9
Alignment explanation
Indices: 7755940--7756071 Score: 51
Period size: 9 Copynumber: 14.0 Consensus size: 9
7755930 AATAACTAAG
7755940 TTATGTAAT
1 TTATGTAAT
*
7755949 TTCTGTATAAT
1 TTATG--TAAT
7755960 ATTAATGT-AT
1 -TT-ATGTAAT
7755970 GTTATGTAAT
1 -TTATGTAAT
7755980 TTATGT-A-
1 TTATGTAAT
* *
7755987 TAAT-TAAC
1 TTATGTAAT
* *
7755995 TAAT-TAAG
1 TTATGTAAT
7756003 TTATGTAAT
1 TTATGTAAT
7756012 TTATGTATAT
1 TTATGTA-AT
*
7756022 TAACTAAT-TAAG
1 T---T-ATGTAAT
7756034 TTATGTAAT
1 TTATGTAAT
7756043 TTATGTAAT
1 TTATGTAAT
*
7756052 ATTAATGTAAG
1 -TT-ATGTAAT
7756063 TTATGTAAT
1 TTATGTAAT
7756072 ATCTTATATT
Statistics
Matches: 96, Mismatches: 11, Indels: 32
0.69 0.08 0.23
Matches are distributed among these distances:
6 1 0.01
7 4 0.04
8 13 0.14
9 43 0.45
10 13 0.14
11 11 0.11
12 4 0.04
13 5 0.05
14 2 0.02
ACGTcount: A:0.37, C:0.02, G:0.11, T:0.49
Consensus pattern (9 bp):
TTATGTAAT
Found at i:7756005 original size:63 final size:64
Alignment explanation
Indices: 7755909--7756071 Score: 196
Period size: 63 Copynumber: 2.6 Consensus size: 64
7755899 TATTATATTA
* * * *
7755909 ATGTAAGTTATGTATAATATTAATAACTAAGTTATGTAATTTCTGTATAAT-ATTAATGTATGTT
1 ATGTAATTTATGTATAATATTAATAACTAAGTTATGTAATTTATGTATAATAACTAAT-TAAGTT
* *
7755973 ATGTAATTTATGTAT-A-ATTAACTAATTAAGTTATGTAATTTATGTATATTAACTAATTAAGTT
1 ATGTAATTTATGTATAATATTAA-TAACTAAGTTATGTAATTTATGTATAATAACTAATTAAGTT
*
7756036 ATGTAATTTATG--TAATATTAAT--GTAAGTTATGTAAT
1 ATGTAATTTATGTATAATATTAATAACTAAGTTATGTAAT
7756072 ATCTTATATT
Statistics
Matches: 88, Mismatches: 7, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
60 13 0.15
61 1 0.01
62 7 0.08
63 48 0.55
64 19 0.22
ACGTcount: A:0.39, C:0.02, G:0.12, T:0.47
Consensus pattern (64 bp):
ATGTAATTTATGTATAATATTAATAACTAAGTTATGTAATTTATGTATAATAACTAATTAAGTT
Found at i:7756061 original size:20 final size:20
Alignment explanation
Indices: 7756036--7756073 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
7756026 TAATTAAGTT
*
7756036 ATGTAATTTATGTAATATTA
1 ATGTAAGTTATGTAATATTA
7756056 ATGTAAGTTATGTAATAT
1 ATGTAAGTTATGTAATAT
7756074 CTTATATTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.39, C:0.00, G:0.13, T:0.47
Consensus pattern (20 bp):
ATGTAAGTTATGTAATATTA
Found at i:7758966 original size:35 final size:36
Alignment explanation
Indices: 7758918--7758987 Score: 99
Period size: 35 Copynumber: 2.0 Consensus size: 36
7758908 CAACTTTTAA
* *
7758918 TTTGTAATATTATAATATTT-ATTTTTTTGTATAAAG
1 TTTGAAATATTATAATATTTAATTTTATT-TATAAAG
7758954 TTTGAAAT-TTATAATATTTAATTTTATTTATAAA
1 TTTGAAATATTATAATATTTAATTTTATTTATAAA
7758988 TAAATTTAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
35 17 0.55
36 14 0.45
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (36 bp):
TTTGAAATATTATAATATTTAATTTTATTTATAAAG
Found at i:7759152 original size:14 final size:15
Alignment explanation
Indices: 7759133--7759201 Score: 63
Period size: 14 Copynumber: 4.7 Consensus size: 15
7759123 TAAAACCTTA
7759133 AACCCC-AAATCCAT
1 AACCCCTAAATCCAT
*
7759147 AACCCCCT-AACCCAT
1 AA-CCCCTAAATCCAT
* *
7759162 TACCCCTAAATCCCCT
1 AACCCCTAAAT-CCAT
*
7759178 AACCCCTAAA-GCAT
1 AACCCCTAAATCCAT
7759192 AACCCCTAAA
1 AACCCCTAAA
7759202 CCCTAAATCC
Statistics
Matches: 44, Mismatches: 7, Indels: 8
0.75 0.12 0.14
Matches are distributed among these distances:
14 19 0.43
15 13 0.30
16 12 0.27
ACGTcount: A:0.38, C:0.45, G:0.01, T:0.16
Consensus pattern (15 bp):
AACCCCTAAATCCAT
Found at i:7759173 original size:30 final size:30
Alignment explanation
Indices: 7759133--7759220 Score: 92
Period size: 30 Copynumber: 2.9 Consensus size: 30
7759123 TAAAACCTTA
*
7759133 AACCCC-AAATCCATAACCCCCTAACCCAT
1 AACCCCTAAATCCCTAACCCCCTAACCCAT
* **
7759162 TACCCCTAAATCCCCTAA-CCCCTAAAGCAT
1 AACCCCTAAAT-CCCTAACCCCCTAACCCAT
7759192 AACCCCTAAA-CCCTAAATCCCCCTAACCC
1 AACCCCTAAATCCCT-AA-CCCCCTAACCC
7759221 CTAAACATCA
Statistics
Matches: 47, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
28 4 0.09
29 7 0.15
30 23 0.49
31 13 0.28
ACGTcount: A:0.35, C:0.48, G:0.01, T:0.16
Consensus pattern (30 bp):
AACCCCTAAATCCCTAACCCCCTAACCCAT
Found at i:7759183 original size:7 final size:7
Alignment explanation
Indices: 7759150--7759224 Score: 51
Period size: 7 Copynumber: 10.0 Consensus size: 7
7759140 AATCCATAAC
7759150 CCCCTAA
1 CCCCTAA
* *
7759157 CCCATTA
1 CCCCTAA
7759164 CCCCTAAA
1 CCCCT-AA
7759172 TCCCCTAA
1 -CCCCTAA
7759180 CCCCTAA
1 CCCCTAA
** *
7759187 AGCATAA
1 CCCCTAA
7759194 CCCCTAA
1 CCCCTAA
*
7759201 ACCCTAAA
1 CCCCT-AA
7759209 TCCCCCTAA
1 --CCCCTAA
7759218 CCCCTAA
1 CCCCTAA
7759225 ACATCAAATT
Statistics
Matches: 51, Mismatches: 12, Indels: 10
0.70 0.16 0.14
Matches are distributed among these distances:
7 35 0.69
8 5 0.10
9 7 0.14
10 4 0.08
ACGTcount: A:0.33, C:0.48, G:0.01, T:0.17
Consensus pattern (7 bp):
CCCCTAA
Done.