Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62811768
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 736185 characters in sequence are not A, C, G, or T
File 29 of 211
Found at i:7759195 original size:37 final size:38
Alignment explanation
Indices: 7759154--7759225 Score: 110
Period size: 37 Copynumber: 1.9 Consensus size: 38
7759144 CATAACCCCC
* *
7759154 TAACCCATTACCCCTAAAT-CCCCTAACCCCTAAAGCA
1 TAACCCATAAACCCTAAATCCCCCTAACCCCTAAAGCA
*
7759191 TAACCCCTAAACCCTAAATCCCCCTAACCCCTAAA
1 TAACCCATAAACCCTAAATCCCCCTAACCCCTAAA
7759226 CATCAAATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
37 16 0.52
38 15 0.48
ACGTcount: A:0.36, C:0.44, G:0.01, T:0.18
Consensus pattern (38 bp):
TAACCCATAAACCCTAAATCCCCCTAACCCCTAAAGCA
Found at i:7760552 original size:15 final size:15
Alignment explanation
Indices: 7760532--7760569 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
7760522 TTGAAATTAA
7760532 CCCTAAATCTCAAAC
1 CCCTAAATCTCAAAC
* *
7760547 CCCTAAACCTCTAAC
1 CCCTAAATCTCAAAC
7760562 CCCTAAAT
1 CCCTAAAT
7760570 TAACCTTAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.37, C:0.42, G:0.00, T:0.21
Consensus pattern (15 bp):
CCCTAAATCTCAAAC
Found at i:7760713 original size:24 final size:24
Alignment explanation
Indices: 7760652--7760715 Score: 69
Period size: 24 Copynumber: 2.7 Consensus size: 24
7760642 TAAATGTTTA
7760652 ATATATATAATTAA-TCATAAAAT
1 ATATATATAATTAATTCATAAAAT
**
7760675 ATAGTCA-ATAATTAATTGTTAAAAT
1 ATA-T-ATATAATTAATTCATAAAAT
*
7760700 ATATATATATTTAATT
1 ATATATATAATTAATT
7760716 TGTATAAATT
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
23 4 0.12
24 19 0.56
25 11 0.32
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (24 bp):
ATATATATAATTAATTCATAAAAT
Found at i:7760718 original size:25 final size:26
Alignment explanation
Indices: 7760668--7760723 Score: 64
Period size: 25 Copynumber: 2.2 Consensus size: 26
7760658 ATAATTAATC
7760668 ATAAAATATAGTCAATAATTAATTGT
1 ATAAAATATAGTCAATAATTAATTGT
*
7760694 -TAAAATATA-T-ATATATTTAATTTGT
1 ATAAAATATAGTCA-ATAATTAA-TTGT
7760719 ATAAA
1 ATAAA
7760724 TTAGTCGAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
23 1 0.04
24 8 0.31
25 13 0.50
26 4 0.15
ACGTcount: A:0.50, C:0.02, G:0.05, T:0.43
Consensus pattern (26 bp):
ATAAAATATAGTCAATAATTAATTGT
Found at i:7761135 original size:41 final size:40
Alignment explanation
Indices: 7761066--7761450 Score: 227
Period size: 41 Copynumber: 9.4 Consensus size: 40
7761056 GCGCTTCGGC
** * *
7761066 AAAAACGCCGCTAAAGGTAAATACATTAGCGGCACTTAGAT
1 AAAAACGCCGCTAAAGACAGAGA-ATTAGCGGCACTTAGAT
* * * * * * *
7761107 ACAAACGCCGCTGAAGACAAGCGAATTAGTGGCGCTCAGTT
1 AAAAACGCCGCTAAAGAC-AGAGAATTAGCGGCACTTAGAT
* * *
7761148 AGAAACGCCGCTAAAGATCCGAGAATTAGCAGCACTT-GTAT
1 AAAAACGCCGCTAAAGA-CAGAGAATTAGCGGCACTTAG-AT
* * * * *
7761189 AAAAACGCCGCTAAAGACCTGAGCATTAGCGGCGCATAGAC
1 AAAAACGCCGCTAAAGA-CAGAGAATTAGCGGCACTTAGAT
* * * * * *
7761230 AAAAACGCCACTAAAGACCCGAGCATTAGCGGCGCATAGAC
1 AAAAACGCCGCTAAAGA-CAGAGAATTAGCGGCACTTAGAT
* * * *
7761271 AAAAACGCCGCTAAAGATCTGAGAATTAGCGGCGCATAGAC
1 AAAAACGCCGCTAAAGA-CAGAGAATTAGCGGCACTTAGAT
* * *
7761312 AAAAACGCCGCTAAAGATCCA-AGCATTAGCGGCGCTTAGAC
1 AAAAACGCCGCTAAAGA--CAGAGAATTAGCGGCACTTAGAT
* * * * * * ** *
7761353 GAAATCGCCGCTAAAGATCGGGGCATTAGCGGCGCTTTCAC
1 AAAAACGCCGCTAAAGA-CAGAGAATTAGCGGCACTTAGAT
* * * * *
7761394 AAAAACGCCG-TGAAAGATCGGAGCATTAGCGGCGCTTACAC
1 AAAAACGCCGCT-AAAGA-CAGAGAATTAGCGGCACTTAGAT
7761435 AAAAACGCCGCTAAAG
1 AAAAACGCCGCTAAAG
7761451 GTTTAAAAAA
Statistics
Matches: 287, Mismatches: 49, Indels: 16
0.82 0.14 0.05
Matches are distributed among these distances:
40 3 0.01
41 278 0.97
42 6 0.02
ACGTcount: A:0.36, C:0.25, G:0.24, T:0.15
Consensus pattern (40 bp):
AAAAACGCCGCTAAAGACAGAGAATTAGCGGCACTTAGAT
Found at i:7761217 original size:82 final size:81
Alignment explanation
Indices: 7761049--7761450 Score: 342
Period size: 82 Copynumber: 4.9 Consensus size: 81
7761039 TTTTGTTACT
* * * * ** * *
7761049 ATTAGCGGCGCTTCGGCAAAAACGCCGCTAAAGGT-AAATACATTAGCGGCACTTAGATACAAAC
1 ATTAGCGGCGCATAGACAAAAACGCCGCTAAAGATCCGA-GCATTAGCGGCACTT-GATAAAAAC
* ** *
7761113 GCCGCTGAAGACAAGCGA
64 GCCGCTAAAGACCTGAGA
* ** * * *
7761131 ATTAGTGGCGC-TCAGTTAGAAACGCCGCTAAAGATCCGAGAATTAGCAGCACTTGTATAAAAAC
1 ATTAGCGGCGCAT-AGACAAAAACGCCGCTAAAGATCCGAGCATTAGCGGCACTTG-ATAAAAAC
*
7761195 GCCGCTAAAGACCTGAGC
64 GCCGCTAAAGACCTGAGA
* * * * *
7761213 ATTAGCGGCGCATAGACAAAAACGCCACTAAAGACCCGAGCATTAGCGGCGCATAGACAAAAACG
1 ATTAGCGGCGCATAGACAAAAACGCCGCTAAAGATCCGAGCATTAGCGGCAC-TTGATAAAAACG
*
7761278 CCGCTAAAGATCTGAGA
65 CCGCTAAAGACCTGAGA
* * ** *
7761295 ATTAGCGGCGCATAGACAAAAACGCCGCTAAAGATCCAAGCATTAGCGGCGCTTAGACGAAATCG
1 ATTAGCGGCGCATAGACAAAAACGCCGCTAAAGATCCGAGCATTAGCGGCACTT-GATAAAAACG
* * * *
7761360 CCGCTAAAGATCGGGGC
65 CCGCTAAAGACCTGAGA
* ** * * * *
7761377 ATTAGCGGCGCTTTCACAAAAACGCCG-TGAAAGATCGGAGCATTAGCGGCGCTTACACAAAAAC
1 ATTAGCGGCGCATAGACAAAAACGCCGCT-AAAGATCCGAGCATTAGCGGCACTT-GATAAAAAC
7761441 GCCGCTAAAG
64 GCCGCTAAAG
7761451 GTTTAAAAAA
Statistics
Matches: 266, Mismatches: 47, Indels: 14
0.81 0.14 0.04
Matches are distributed among these distances:
81 4 0.02
82 258 0.97
83 4 0.02
ACGTcount: A:0.35, C:0.25, G:0.24, T:0.16
Consensus pattern (81 bp):
ATTAGCGGCGCATAGACAAAAACGCCGCTAAAGATCCGAGCATTAGCGGCACTTGATAAAAACGC
CGCTAAAGACCTGAGA
Found at i:7761277 original size:123 final size:122
Alignment explanation
Indices: 7761150--7761450 Score: 372
Period size: 123 Copynumber: 2.4 Consensus size: 122
7761140 GCTCAGTTAG
* * * *
7761150 AAACGCCGCTAAAGATCCGAGAATTAGCAGCACTTGTATAAAAACGCCGCTAAAGA-CCTGAGCA
1 AAACGCCGCTAAAGATCCGAGAATTAGCGGCGCTTG-ACAAAAACGCCGCTAAAGATCC-AAGCA
*
7761214 TTAGCGGCGCATAGACAAAAACGCCACTAAAGACCCGAGCATTAGCGGCGCATAGACAA
64 TTAGCGGCGCATAGACAAAAACGCCACTAAAGACCCGAGCATTAGCGGCGCATACACAA
* *
7761273 AAACGCCGCTAAAGATCTGAGAATTAGCGGCGCATAGACAAAAACGCCGCTAAAGATCCAAGCAT
1 AAACGCCGCTAAAGATCCGAGAATTAGCGGCGC-TTGACAAAAACGCCGCTAAAGATCCAAGCAT
* * * * * * * * *
7761338 TAGCGGCGCTTAGACGAAATCGCCGCTAAAGATCGGGGCATTAGCGGCGCTTTCACAA
65 TAGCGGCGCATAGACAAAAACGCCACTAAAGACCCGAGCATTAGCGGCGCATACACAA
* * *
7761396 AAACGCCG-TGAAAGATCGGAGCATTAGCGGCGCTTACACAAAAACGCCGCTAAAG
1 AAACGCCGCT-AAAGATCCGAGAATTAGCGGCGCTT-GACAAAAACGCCGCTAAAG
7761451 GTTTAAAAAA
Statistics
Matches: 154, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
122 2 0.01
123 148 0.96
124 4 0.03
ACGTcount: A:0.36, C:0.26, G:0.24, T:0.15
Consensus pattern (122 bp):
AAACGCCGCTAAAGATCCGAGAATTAGCGGCGCTTGACAAAAACGCCGCTAAAGATCCAAGCATT
AGCGGCGCATAGACAAAAACGCCACTAAAGACCCGAGCATTAGCGGCGCATACACAA
Found at i:7761576 original size:40 final size:40
Alignment explanation
Indices: 7761507--7761605 Score: 112
Period size: 40 Copynumber: 2.5 Consensus size: 40
7761497 GGCACTTTAT
* * **
7761507 ATAAAACGCCGCTAATTC-CTATTTTTAGCGGCGCTTCCGG
1 ATAAATCGCCGCTAATGCTCTACCTTTAGCGGCGCTT-CGG
* *
7761547 AT-AATCGCCGCTGATGCTCTACCTTTAGCGGCGCTTTGG
1 ATAAATCGCCGCTAATGCTCTACCTTTAGCGGCGCTTCGG
*
7761586 CTAAATCGCCGCTAATGCTC
1 ATAAATCGCCGCTAATGCTC
7761606 GATTTTTTGT
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
39 15 0.31
40 34 0.69
ACGTcount: A:0.20, C:0.29, G:0.21, T:0.29
Consensus pattern (40 bp):
ATAAATCGCCGCTAATGCTCTACCTTTAGCGGCGCTTCGG
Found at i:7763120 original size:16 final size:16
Alignment explanation
Indices: 7763099--7763136 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
7763089 AAAAGCGCCG
*
7763099 CAAAAAAGGCCGCTAA
1 CAAAAAAGACCGCTAA
*
7763115 CAAAAACGACCGCTAA
1 CAAAAAAGACCGCTAA
7763131 CAAAAA
1 CAAAAA
7763137 CGACGCAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.55, C:0.26, G:0.13, T:0.05
Consensus pattern (16 bp):
CAAAAAAGACCGCTAA
Found at i:7763137 original size:16 final size:16
Alignment explanation
Indices: 7763108--7763140 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
7763098 GCAAAAAAGG
7763108 CCGCTAACAAAAACGA
1 CCGCTAACAAAAACGA
7763124 CCGCTAACAAAAACGA
1 CCGCTAACAAAAACGA
7763140 C
1 C
7763141 GCAAATGTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.48, C:0.33, G:0.12, T:0.06
Consensus pattern (16 bp):
CCGCTAACAAAAACGA
Found at i:7763219 original size:42 final size:42
Alignment explanation
Indices: 7763166--7763280 Score: 169
Period size: 42 Copynumber: 2.7 Consensus size: 42
7763156 GTTTACAAAC
*
7763166 AAAAACACCGCTAAAGACCATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAGAA
* *
7763208 AAAAACGCCGCTAAAAACCATGTTCTTTAGCGGCGCTTTGAA
1 AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAGAA
* *
7763250 AGAAACGCCGCTAAAGAGCAT-TGTCTTTAGC
1 AAAAACGCCGCTAAAGACCATGT-TCTTTAGC
7763281 AGCGTTTTTT
Statistics
Matches: 66, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
41 1 0.02
42 65 0.98
ACGTcount: A:0.34, C:0.23, G:0.20, T:0.23
Consensus pattern (42 bp):
AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAGAA
Found at i:7763346 original size:43 final size:43
Alignment explanation
Indices: 7763255--7763419 Score: 242
Period size: 43 Copynumber: 3.8 Consensus size: 43
7763245 TTGAAAGAAA
* * *
7763255 CGCCGCTAAAGAGCATTGTCTTTAGCAGCG-TTTTTTTCTAAG
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTTTTTCTAAG
*
7763297 CGCCGCTAAAGAACATGGTCTTTAGTGGCGCTTTTTTTCTAAG
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTTTTTCTAAG
* * *
7763340 CGCCGCTAAAGATCATGGTCTTTAGCGGCGTTTTTGTTTGTAAG
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTT-TTTCTAAG
*
7763384 CGCCGCTAAAGAACATGGTCTTTAGTGGCGCTTTTT
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTTT
7763420 CACAAAAAAC
Statistics
Matches: 110, Mismatches: 11, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
42 26 0.24
43 45 0.41
44 39 0.35
ACGTcount: A:0.20, C:0.21, G:0.24, T:0.35
Consensus pattern (43 bp):
CGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTTTTTCTAAG
Found at i:7763408 original size:87 final size:85
Alignment explanation
Indices: 7763255--7763419 Score: 276
Period size: 87 Copynumber: 1.9 Consensus size: 85
7763245 TTGAAAGAAA
*
7763255 CGCCGCTAAAGAGCATTGTCTTTAGCAGCGTTTTTTTCTAAGCGCCGCTAAAGAACATGGTCTTT
1 CGCCGCTAAAGAGCATGGTCTTTAGCAGCGTTTTTTTCTAAGCGCCGCTAAAGAACATGGTCTTT
7763320 AGTGGCGCTTTTTTTCTAAG
66 AGTGGCGCTTTTTTTCTAAG
* * *
7763340 CGCCGCTAAAGATCATGGTCTTTAGCGGCGTTTTTGTTTGTAAGCGCCGCTAAAGAACATGGTCT
1 CGCCGCTAAAGAGCATGGTCTTTAGCAGCG-TTTT-TTTCTAAGCGCCGCTAAAGAACATGGTCT
7763405 TTAGTGGCGCTTTTT
64 TTAGTGGCGCTTTTT
7763420 CACAAAAAAC
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
85 27 0.36
86 4 0.05
87 43 0.58
ACGTcount: A:0.20, C:0.21, G:0.24, T:0.35
Consensus pattern (85 bp):
CGCCGCTAAAGAGCATGGTCTTTAGCAGCGTTTTTTTCTAAGCGCCGCTAAAGAACATGGTCTTT
AGTGGCGCTTTTTTTCTAAG
Found at i:7763755 original size:21 final size:21
Alignment explanation
Indices: 7763729--7763799 Score: 106
Period size: 21 Copynumber: 3.4 Consensus size: 21
7763719 TTTTGCTCTG
*
7763729 CTCTGCTTCTCTCGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
*
7763750 CTCTGCTTCCCTCGCTACAGC
1 CTCTGCTTCCCTCGCTGCAGC
* *
7763771 CGCTGCTTCCCTCGCTGCCGC
1 CTCTGCTTCCCTCGCTGCAGC
7763792 CTCTGCTT
1 CTCTGCTT
7763800 TAAGTTGTAG
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 44 1.00
ACGTcount: A:0.04, C:0.46, G:0.18, T:0.31
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCAGC
Found at i:7769283 original size:9 final size:9
Alignment explanation
Indices: 7769269--7769577 Score: 314
Period size: 9 Copynumber: 35.1 Consensus size: 9
7769259 ACTATAAATG
7769269 AGTTATGTA
1 AGTTATGTA
7769278 AGTTATGATA
1 AGTTATG-TA
* * *
7769288 TGATA-GGA
1 AGTTATGTA
7769296 ATGTTATGT-
1 A-GTTATGTA
7769305 A-TTATGTA
1 AGTTATGTA
7769313 AGTTATGTA
1 AGTTATGTA
*
7769322 AGTTGTGT-
1 AGTTATGTA
*
7769330 A-TTATGTG
1 AGTTATGTA
7769338 AGTTATGTA
1 AGTTATGTA
7769347 AGTTATGTA
1 AGTTATGTA
*
7769356 AGTTATTTA
1 AGTTATGTA
*
7769365 ATTTATGTA
1 AGTTATGTA
7769374 AGTTATGTA
1 AGTTATGTA
7769383 AGTTATGTA
1 AGTTATGTA
*
7769392 AGTTATTTA
1 AGTTATGTA
*
7769401 ATTTATGTA
1 AGTTATGTA
7769410 AGTTATGTA
1 AGTTATGTA
7769419 AGTTATGTA
1 AGTTATGTA
*
7769428 AGTTATTTA
1 AGTTATGTA
*
7769437 ATTTATGTA
1 AGTTATGTA
7769446 AGTTATGTA
1 AGTTATGTA
7769455 AGTTATGTA
1 AGTTATGTA
* *
7769464 GGCTATGT-
1 AGTTATGTA
*
7769472 A-TTATCTA
1 AGTTATGTA
* *
7769480 AATAATGTA
1 AGTTATGTA
* *
7769489 AGCTA-GGA
1 AGTTATGTA
7769497 AGGTTATGT-
1 A-GTTATGTA
7769506 -GTTATGTA
1 AGTTATGTA
*
7769514 AGTTATTTA
1 AGTTATGTA
*
7769523 AGTTATGCA
1 AGTTATGTA
*
7769532 AGTTATTTA
1 AGTTATGTA
*
7769541 ATTTATGTA
1 AGTTATGTA
7769550 AGTTATGTA
1 AGTTATGTA
*
7769559 ATTTATGTA
1 AGTTATGTA
7769568 AGTTATGTA
1 AGTTATGTA
7769577 A
1 A
7769578 TTAGAAATTT
Statistics
Matches: 243, Mismatches: 44, Indels: 26
0.78 0.14 0.08
Matches are distributed among these distances:
7 22 0.09
8 8 0.03
9 206 0.85
10 7 0.03
ACGTcount: A:0.33, C:0.01, G:0.20, T:0.46
Consensus pattern (9 bp):
AGTTATGTA
Found at i:7769666 original size:37 final size:37
Alignment explanation
Indices: 7769611--7769701 Score: 137
Period size: 37 Copynumber: 2.5 Consensus size: 37
7769601 TATAAGTAAT
* *
7769611 CTTAATATTGTATGAGTTATGTAATTCGAAATCTTAC
1 CTTAATATTGTATAAGTTATGTAATTAGAAATCTTAC
* *
7769648 CTTAATATTGTATAAGTTATGTAATTAGAAATTTTAT
1 CTTAATATTGTATAAGTTATGTAATTAGAAATCTTAC
*
7769685 CTTAATATTATATAAGT
1 CTTAATATTGTATAAGT
7769702 AATCTTAATA
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 49 1.00
ACGTcount: A:0.36, C:0.07, G:0.11, T:0.46
Consensus pattern (37 bp):
CTTAATATTGTATAAGTTATGTAATTAGAAATCTTAC
Found at i:7769692 original size:94 final size:94
Alignment explanation
Indices: 7769566--7769767 Score: 404
Period size: 94 Copynumber: 2.1 Consensus size: 94
7769556 GTAATTTATG
7769566 TAAGTTATGTAATTAGAAATTTTATCTTAATATTATATAAGTAATCTTAATATTGTATGAGTTAT
1 TAAGTTATGTAATTAGAAATTTTATCTTAATATTATATAAGTAATCTTAATATTGTATGAGTTAT
7769631 GTAATTCGAAATCTTACCTTAATATTGTA
66 GTAATTCGAAATCTTACCTTAATATTGTA
7769660 TAAGTTATGTAATTAGAAATTTTATCTTAATATTATATAAGTAATCTTAATATTGTATGAGTTAT
1 TAAGTTATGTAATTAGAAATTTTATCTTAATATTATATAAGTAATCTTAATATTGTATGAGTTAT
7769725 GTAATTCGAAATCTTACCTTAATATTGTA
66 GTAATTCGAAATCTTACCTTAATATTGTA
7769754 TAAGTTATGTAATT
1 TAAGTTATGTAATT
7769768 TATGTAAGTT
Statistics
Matches: 108, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
94 108 1.00
ACGTcount: A:0.37, C:0.06, G:0.11, T:0.46
Consensus pattern (94 bp):
TAAGTTATGTAATTAGAAATTTTATCTTAATATTATATAAGTAATCTTAATATTGTATGAGTTAT
GTAATTCGAAATCTTACCTTAATATTGTA
Found at i:7769709 original size:57 final size:57
Alignment explanation
Indices: 7769648--7769947 Score: 392
Period size: 57 Copynumber: 5.3 Consensus size: 57
7769638 GAAATCTTAC
*
7769648 CTTAATATTGTATAAGTTATGTAATTAGAAATTTTATCTTAATATTATATAAGTAAT
1 CTTAATATTATATAAGTTATGTAATTAGAAATTTTATCTTAATATTATATAAGTAAT
* * * * * * *
7769705 CTTAATATTGTATGAGTTATGTAATTCGAAATCTTACCTTAATATTGTATAAGTTAT
1 CTTAATATTATATAAGTTATGTAATTAGAAATTTTATCTTAATATTATATAAGTAAT
* *
7769762 -GTAAT-TTATGTAAGTTATGTAATTAGAAATTTTATCTTAATATTATATAAGTAAT
1 CTTAATATTATATAAGTTATGTAATTAGAAATTTTATCTTAATATTATATAAGTAAT
* * * * * * *
7769817 CTTAATATTGTATGAGTTATGTAATTCGAAATCTTACCTTAATATTGTATAAGTTAT
1 CTTAATATTATATAAGTTATGTAATTAGAAATTTTATCTTAATATTATATAAGTAAT
* * *
7769874 -GTAAT-TTATGTAAGTTATGTAATTAGAAATTTTATCTTAAAATTATATAAGTAAT
1 CTTAATATTATATAAGTTATGTAATTAGAAATTTTATCTTAATATTATATAAGTAAT
7769929 CTTAATATTATATAAGTTA
1 CTTAATATTATATAAGTTA
7769948 CGGAAAATTA
Statistics
Matches: 203, Mismatches: 36, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
55 83 0.41
56 16 0.08
57 104 0.51
ACGTcount: A:0.38, C:0.05, G:0.11, T:0.46
Consensus pattern (57 bp):
CTTAATATTATATAAGTTATGTAATTAGAAATTTTATCTTAATATTATATAAGTAAT
Found at i:7769766 original size:206 final size:205
Alignment explanation
Indices: 7769543--7770134 Score: 707
Period size: 206 Copynumber: 2.9 Consensus size: 205
7769533 GTTATTTAAT
*
7769543 TTATGTAAGTTATGTAATTTATGTAAGTTATGTAATTAGAAATTTTATCTTAATATTATATAAGT
1 TTATATAAGTTATGTAATTTATGTAAGTTATGTAATTAGAAATTTTATCTTAATATTATATAAGT
7769608 AATCTTAATATTGTATGAGTTATGTAATTCGAAATCTTACCTTAATATTGTATAAGTTATGTAAT
66 AATCTTAATATTGTATGAGTTATGTAATTCGAAATCTTACCTTAATATTGTATAAGTTATGTAAT
* * * * * * *
7769673 TA-GAAATTTTATCTTAATATTATATAA-GTAATCTTAATATTGTATGAGTTAT-GTAAT-TCGA
131 TATGAAA-GTTAT-GT-A-ATTAGA-AATGTAATCTTAAAATTATATAAGTAATCGTAATAT-GA
* ** *
7769734 -A-ATCTTACCTTAATA
190 TATAACTTA-CGGAAAA
*
7769749 TTGTATAAGTTATGTAATTTATGTAAGTTATGTAATTAGAAATTTTATCTTAATATTATATAAGT
1 TTATATAAGTTATGTAATTTATGTAAGTTATGTAATTAGAAATTTTATCTTAATATTATATAAGT
7769814 AATCTTAATATTGTATGAGTTATGTAATTCGAAATCTTACCTTAATATTGTATAAGTTATGTAAT
66 AATCTTAATATTGTATGAGTTATGTAATTCGAAATCTTACCTTAATATTGTATAAGTTATGTAA-
* * * * *
7769879 TTATGTAAGTTATGTAATTAGAAATTTTATCTTAAAATTATATAAGTAATCTTAATATTATATAA
130 TTATGAAAGTTATGTAATTAGAAATGTAATCTTAAAATTATATAAGTAATCGTAATATGATATAA
*
7769944 GTTACGGAAAA
195 CTTACGGAAAA
* * * * * ** *
7769955 TTATATAAGTTATGTAATTCA--AAATTTGATCTTAATATTATAAAAGTAATCTTAATATTATAT
1 TTATATAAGTTATGTAATTTATGTAAGTT-AT-GT-A-ATTAGAAATTTTATCTTAATATTATAT
7770018 AAGTAATCTTAATATTGTATGAGTTATGTAATTCGAAATCTTACCTTAATATTGTATAAGTTATG
62 AAGTAATCTTAATATTGTATGAGTTATGTAATTCGAAATCTTACCTTAATATTGTATAAGTTATG
* * * *
7770083 TAATATTAT-ATAAGTTATGTAATTCGAAATTTTATCTTAATATTATATAAGT
127 T-A-ATTATGA-AAGTTATGTAATTAGAAATGTAATCTTAAAATTATATAAGT
7770135 TACGGAAAAT
Statistics
Matches: 341, Mismatches: 31, Indels: 25
0.86 0.08 0.06
Matches are distributed among these distances:
203 2 0.01
204 28 0.08
205 8 0.02
206 154 0.45
207 12 0.04
208 92 0.27
209 44 0.13
210 1 0.00
ACGTcount: A:0.38, C:0.05, G:0.11, T:0.46
Consensus pattern (205 bp):
TTATATAAGTTATGTAATTTATGTAAGTTATGTAATTAGAAATTTTATCTTAATATTATATAAGT
AATCTTAATATTGTATGAGTTATGTAATTCGAAATCTTACCTTAATATTGTATAAGTTATGTAAT
TATGAAAGTTATGTAATTAGAAATGTAATCTTAAAATTATATAAGTAATCGTAATATGATATAAC
TTACGGAAAA
Found at i:7769781 original size:112 final size:112
Alignment explanation
Indices: 7769660--7769947 Score: 549
Period size: 112 Copynumber: 2.6 Consensus size: 112
7769650 TAATATTGTA
7769660 TAAGTTATGTAATTAGAAATTTTATCTTAATATTATATAAGTAATCTTAATATTGTATGAGTTAT
1 TAAGTTATGTAATTAGAAATTTTATCTTAATATTATATAAGTAATCTTAATATTGTATGAGTTAT
7769725 GTAATTCGAAATCTTACCTTAATATTGTATAAGTTATGTAATTTATG
66 GTAATTCGAAATCTTACCTTAATATTGTATAAGTTATGTAATTTATG
7769772 TAAGTTATGTAATTAGAAATTTTATCTTAATATTATATAAGTAATCTTAATATTGTATGAGTTAT
1 TAAGTTATGTAATTAGAAATTTTATCTTAATATTATATAAGTAATCTTAATATTGTATGAGTTAT
7769837 GTAATTCGAAATCTTACCTTAATATTGTATAAGTTATGTAATTTATG
66 GTAATTCGAAATCTTACCTTAATATTGTATAAGTTATGTAATTTATG
* * *
7769884 TAAGTTATGTAATTAGAAATTTTATCTTAAAATTATATAAGTAATCTTAATATTATATAAGTTA
1 TAAGTTATGTAATTAGAAATTTTATCTTAATATTATATAAGTAATCTTAATATTGTATGAGTTA
7769948 CGGAAAATTA
Statistics
Matches: 173, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
112 173 1.00
ACGTcount: A:0.38, C:0.05, G:0.11, T:0.46
Consensus pattern (112 bp):
TAAGTTATGTAATTAGAAATTTTATCTTAATATTATATAAGTAATCTTAATATTGTATGAGTTAT
GTAATTCGAAATCTTACCTTAATATTGTATAAGTTATGTAATTTATG
Found at i:7769959 original size:19 final size:20
Alignment explanation
Indices: 7769912--7769967 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 20
7769902 ATTTTATCTT
* **
7769912 AAAATTATATAAGTAATCTT
1 AAAATTATATAAGTTATCGG
*
7769932 AATATTATATAAGTTA-CGG
1 AAAATTATATAAGTTATCGG
7769951 AAAATTATATAAGTTAT
1 AAAATTATATAAGTTAT
7769968 GTAATTCAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
19 16 0.53
20 14 0.47
ACGTcount: A:0.48, C:0.04, G:0.09, T:0.39
Consensus pattern (20 bp):
AAAATTATATAAGTTATCGG
Found at i:7769980 original size:76 final size:76
Alignment explanation
Indices: 7769854--7770099 Score: 282
Period size: 76 Copynumber: 3.2 Consensus size: 76
7769844 GAAATCTTAC
* * * * *
7769854 CTTAATATTGTATAAGTTA-TGTAATTTATGTAAGTTATGTAATT-AGAAATTTTATCTTAAAAT
1 CTTAATATTATATAAGTTACTGAAAATTATATAAGTTATGTAATTCA-AAATTTTATCTTAATAT
7769917 TATATAAGTAAT
65 TATATAAGTAAT
* *
7769929 CTTAATATTATATAAGTTACGGAAAATTATATAAGTTATGTAATTCAAAATTTGATCTTAATATT
1 CTTAATATTATATAAGTTACTGAAAATTATATAAGTTATGTAATTCAAAATTTTATCTTAATATT
*
7769994 ATAAAAGTAAT
66 ATATAAGTAAT
* * * * * * * *
7770005 CTTAATATTATATAAGTAATCTTAATATTGTATGAGTTATGTAATTCGAAATCTTACCTTAATAT
1 CTTAATATTATATAAGTTA-CTGAAAATTATATAAGTTATGTAATTCAAAATTTTATCTTAATAT
* *
7770070 TGTATAAGTTAT
65 TATATAAGTAAT
*
7770082 -GTAATATTATATAAGTTA
1 CTTAATATTATATAAGTTA
7770100 TGTAATTCGA
Statistics
Matches: 145, Mismatches: 23, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
75 18 0.12
76 81 0.56
77 46 0.32
ACGTcount: A:0.41, C:0.05, G:0.10, T:0.44
Consensus pattern (76 bp):
CTTAATATTATATAAGTTACTGAAAATTATATAAGTTATGTAATTCAAAATTTTATCTTAATATT
ATATAAGTAAT
Found at i:7770030 original size:20 final size:20
Alignment explanation
Indices: 7769907--7770033 Score: 111
Period size: 20 Copynumber: 6.5 Consensus size: 20
7769897 TAGAAATTTT
*
7769907 ATCTTAAAATTATATAAGTA
1 ATCTTAATATTATATAAGTA
*
7769927 ATCTTAATATTATATAAGTT
1 ATCTTAATATTATATAAGTA
** * *
7769947 A-CGGAAAATTATATAAGTT
1 ATCTTAATATTATATAAGTA
* * * *
7769966 AT-GTAAT-TCA-A-AATTTG
1 ATCTTAATATTATATAA-GTA
*
7769983 ATCTTAATATTATAAAAGTA
1 ATCTTAATATTATATAAGTA
7770003 ATCTTAATATTATATAAGTA
1 ATCTTAATATTATATAAGTA
7770023 ATCTTAATATT
1 ATCTTAATATT
7770034 GTATGAGTTA
Statistics
Matches: 86, Mismatches: 15, Indels: 12
0.76 0.13 0.11
Matches are distributed among these distances:
16 2 0.02
17 4 0.05
18 6 0.07
19 21 0.24
20 51 0.59
21 2 0.02
ACGTcount: A:0.45, C:0.06, G:0.07, T:0.43
Consensus pattern (20 bp):
ATCTTAATATTATATAAGTA
Found at i:7770088 original size:19 final size:19
Alignment explanation
Indices: 7770064--7770534 Score: 101
Period size: 20 Copynumber: 24.9 Consensus size: 19
7770054 AATCTTACCT
*
7770064 TAATATTGTATAAGTTATG
1 TAATATTATATAAGTTATG
7770083 TAATATTATATAAGTTATG
1 TAATATTATATAAGTTATG
* ** *
7770102 TAAT-TCGA-A-ATTTTATCT
1 TAATAT-TATATAAGTTAT-G
*
7770120 TAATATTATATAAGTTACG
1 TAATATTATATAAGTTATG
* *
7770139 GAAAATTATATAAGTTATG
1 TAATATTATATAAGTTATG
** * *
7770158 T-A-ATTCGA-AATTTGATCT
1 TAATATTATATAAGTT-AT-G
* * *
7770176 TAATATTATAAAAGTAATCT
1 TAATATTATATAAGTTAT-G
*
7770196 TAATATTATATAACTTATG
1 TAATATTATATAAGTTATG
* ** *
7770215 TAAT-TCGA-A-ATTTTATCT
1 TAATAT-TATATAAGTTAT-G
*
7770233 TAATATTGTACATAAGTTATG
1 TAATA-T-TATATAAGTTATG
7770254 TAATATTATATAAGTTATG
1 TAATATTATATAAGTTATG
** * *
7770273 T-A-ATTCGA-AATTTGATCT
1 TAATATTATATAAGTT-AT-G
* * *
7770291 TAATATTATAAAAGTAATTT
1 TAATATTATATAAGTTA-TG
7770311 TAATATTATATAAGTTATG
1 TAATATTATATAAGTTATG
*** ** *
7770330 TAAT-TCGGA-ATTTTATCT
1 TAATATTATATAAGTTAT-G
*
7770348 TAATATTGTATAAGTTATG
1 TAATATTATATAAGTTATG
* *
7770367 T-A-ATTAGA-AATTTTACCT-
1 TAATATTATATAA-GTTA--TG
* *
7770385 TATTATTGTATAAGTTATG
1 TAATATTATATAAGTTATG
** * *
7770404 T-A-ATTCGA-AATTTGATCT
1 TAATATTATATAAGTT-AT-G
*
7770422 TAATATTATAAAAGTAATAT-
1 TAATATTATATAAGT--TATG
7770442 TAATATTATATAAGTTATG
1 TAATATTATATAAGTTATG
* ** *
7770461 TAAT-TCGAT-T-TTTTATCT
1 TAATAT-TATATAAGTTAT-G
* *
7770479 TAACATGATATAAGTTATG
1 TAATATTATATAAGTTATG
*
7770498 TAATATTATATAAGTTATCT
1 TAATATTATATAAGTTAT-G
7770518 TAATATTATATAAGTTA
1 TAATATTATATAAGTTA
7770535 AGAAATTGTA
Statistics
Matches: 321, Mismatches: 85, Indels: 91
0.65 0.17 0.18
Matches are distributed among these distances:
16 14 0.04
17 44 0.14
18 38 0.12
19 97 0.30
20 102 0.32
21 18 0.06
22 7 0.02
23 1 0.00
ACGTcount: A:0.39, C:0.05, G:0.10, T:0.46
Consensus pattern (19 bp):
TAATATTATATAAGTTATG
Found at i:7770103 original size:56 final size:56
Alignment explanation
Indices: 7770003--7770370 Score: 493
Period size: 56 Copynumber: 6.5 Consensus size: 56
7769993 TATAAAAGTA
* * * * *
7770003 ATCTTAATATTATATAAGTAATCTTAATATTGTATGAGTTATGTAATTCGAAATCTT
1 ATCTTAATATTATATAAGTTAT-GTAATATTATATAAGTTATGTAATTCGAAATTTT
* *
7770060 ACCTTAATATTGTATAAGTTATGTAATATTATATAAGTTATGTAATTCGAAATTTT
1 ATCTTAATATTATATAAGTTATGTAATATTATATAAGTTATGTAATTCGAAATTTT
* * * *
7770116 ATCTTAATATTATATAAGTTACGGAAAATTATATAAGTTATGTAATTCGAAATTTG
1 ATCTTAATATTATATAAGTTATGTAATATTATATAAGTTATGTAATTCGAAATTTT
* * * *
7770172 ATCTTAATATTATAAAAGTAATCTTAATATTATATAACTTATGTAATTCGAAATTTT
1 ATCTTAATATTATATAAGTTAT-GTAATATTATATAAGTTATGTAATTCGAAATTTT
* *
7770229 ATCTTAATATTGTACATAAGTTATGTAATATTATATAAGTTATGTAATTCGAAATTTG
1 ATCTTAATA-T-TATATAAGTTATGTAATATTATATAAGTTATGTAATTCGAAATTTT
* * * *
7770287 ATCTTAATATTATAAAAGTAATTTTAATATTATATAAGTTATGTAATTCGGAATTTT
1 ATCTTAATATTATATAAGTTA-TGTAATATTATATAAGTTATGTAATTCGAAATTTT
*
7770344 ATCTTAATATTGTATAAGTTATGTAAT
1 ATCTTAATATTATATAAGTTATGTAAT
7770371 TAGAAATTTT
Statistics
Matches: 270, Mismatches: 37, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
56 112 0.41
57 108 0.40
58 41 0.15
59 9 0.03
ACGTcount: A:0.39, C:0.05, G:0.10, T:0.45
Consensus pattern (56 bp):
ATCTTAATATTATATAAGTTATGTAATATTATATAAGTTATGTAATTCGAAATTTT
Found at i:7770292 original size:115 final size:113
Alignment explanation
Indices: 7770003--7770370 Score: 519
Period size: 115 Copynumber: 3.2 Consensus size: 113
7769993 TATAAAAGTA
* * * * * *
7770003 ATCTTAATATTAT-ATAAGTAATCTTAATATTGTATGAGTTATGTAATTCGAAATCTT-ACCTTA
1 ATCTTAATATTGTAATAAGTTAT-GTAATATTATATAAGTTATGTAATTCGAAAT-TTGATCTTA
* * * *
7770066 ATATTGTATAAGTTATGTAATATTATATAAGTTATGTAATTCGAAATTTT
64 ATATTATAAAAGTAATTTAATATTATATAAGTTATGTAATTCGAAATTTT
* * * *
7770116 ATCTTAATATTAT-ATAAGTTACGGAAAATTATATAAGTTATGTAATTCGAAATTTGATCTTAAT
1 ATCTTAATATTGTAATAAGTTATGTAATATTATATAAGTTATGTAATTCGAAATTTGATCTTAAT
*
7770180 ATTATAAAAGTAATCTTAATATTATATAACTTATGTAATTCGAAATTTT
66 ATTATAAAAGTAAT-TTAATATTATATAAGTTATGTAATTCGAAATTTT
7770229 ATCTTAATATTGTACATAAGTTATGTAATATTATATAAGTTATGTAATTCGAAATTTGATCTTAA
1 ATCTTAATATTGTA-ATAAGTTATGTAATATTATATAAGTTATGTAATTCGAAATTTGATCTTAA
*
7770294 TATTATAAAAGTAATTTTAATATTATATAAGTTATGTAATTCGGAATTTT
65 TATTATAAAAGTAA-TTTAATATTATATAAGTTATGTAATTCGAAATTTT
7770344 ATCTTAATATTGT-ATAAGTTATGTAAT
1 ATCTTAATATTGTAATAAGTTATGTAAT
7770371 TAGAAATTTT
Statistics
Matches: 231, Mismatches: 19, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
111 2 0.01
112 44 0.19
113 78 0.34
115 106 0.46
116 1 0.00
ACGTcount: A:0.39, C:0.05, G:0.10, T:0.45
Consensus pattern (113 bp):
ATCTTAATATTGTAATAAGTTATGTAATATTATATAAGTTATGTAATTCGAAATTTGATCTTAAT
ATTATAAAAGTAATTTAATATTATATAAGTTATGTAATTCGAAATTTT
Found at i:7770360 original size:37 final size:37
Alignment explanation
Indices: 7770310--7770428 Score: 184
Period size: 37 Copynumber: 3.2 Consensus size: 37
7770300 AAAAGTAATT
* *
7770310 TTAATATTATATAAGTTATGTAATTCGGAATTTTATC
1 TTAATATTGTATAAGTTATGTAATTCGAAATTTTATC
* *
7770347 TTAATATTGTATAAGTTATGTAATTAGAAATTTTACC
1 TTAATATTGTATAAGTTATGTAATTCGAAATTTTATC
* *
7770384 TTATTATTGTATAAGTTATGTAATTCGAAATTTGATC
1 TTAATATTGTATAAGTTATGTAATTCGAAATTTTATC
7770421 TTAATATT
1 TTAATATT
7770429 ATAAAAGTAA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 73 1.00
ACGTcount: A:0.35, C:0.05, G:0.11, T:0.49
Consensus pattern (37 bp):
TTAATATTGTATAAGTTATGTAATTCGAAATTTTATC
Found at i:7770479 original size:57 final size:56
Alignment explanation
Indices: 7770388--7770515 Score: 168
Period size: 57 Copynumber: 2.3 Consensus size: 56
7770378 TTTACCTTAT
* * *
7770388 TATTGTATAAGTTATGTAATTCGAAATTTGATCTTAATATTATAAAAGTAATAT-TAA
1 TATTATATAAGTTATGTAATTCGAAATTTGATCTTAACATGATAAAAGT--TATGTAA
** * *
7770445 TATTATATAAGTTATGTAATTCGATTTTTTATCTTAACATGATATAAGTTATGTAA
1 TATTATATAAGTTATGTAATTCGAAATTTGATCTTAACATGATAAAAGTTATGTAA
7770501 TATTATATAAGTTAT
1 TATTATATAAGTTAT
7770516 CTTAATATTA
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
55 3 0.05
56 18 0.29
57 42 0.67
ACGTcount: A:0.39, C:0.04, G:0.10, T:0.47
Consensus pattern (56 bp):
TATTATATAAGTTATGTAATTCGAAATTTGATCTTAACATGATAAAAGTTATGTAA
Found at i:7770496 original size:131 final size:131
Alignment explanation
Indices: 7770257--7770501 Score: 422
Period size: 131 Copynumber: 1.9 Consensus size: 131
7770247 AGTTATGTAA
*
7770257 TATTATATAAGTTATGTAATTCGAAATTTGATCTTAATATTATAAAAGTAATTTTAATATTATAT
1 TATTATATAAGTTATGTAATTCGAAATTTGATCTTAATATTATAAAAGTAATATTAATATTATAT
*
7770322 AAGTTATGTAATTCGGAATTTTATCTTAATATTGTATAAGTTATGTAATTAGAAATTTTACCTTA
66 AAGTTATGTAATTCGGAATTTTATCTTAACATTGTATAAGTTATGTAATTAGAAATTTTACCTTA
7770387 T
131 T
*
7770388 TATTGTATAAGTTATGTAATTCGAAATTTGATCTTAATATTATAAAAGTAATATTAATATTATAT
1 TATTATATAAGTTATGTAATTCGAAATTTGATCTTAATATTATAAAAGTAATATTAATATTATAT
*
7770453 AAGTTATGTAATTC-GATTTTTTATCTTAACA-TGATATAAGTTATGTAAT
66 AAGTTATGTAATTCGGA-ATTTTATCTTAACATTG-TATAAGTTATGTAAT
7770502 ATTATATAAG
Statistics
Matches: 108, Mismatches: 4, Indels: 4
0.93 0.03 0.03
Matches are distributed among these distances:
130 4 0.04
131 104 0.96
ACGTcount: A:0.38, C:0.04, G:0.10, T:0.47
Consensus pattern (131 bp):
TATTATATAAGTTATGTAATTCGAAATTTGATCTTAATATTATAAAAGTAATATTAATATTATAT
AAGTTATGTAATTCGGAATTTTATCTTAACATTGTATAAGTTATGTAATTAGAAATTTTACCTTA
T
Found at i:7770529 original size:39 final size:39
Alignment explanation
Indices: 7770422--7770534 Score: 124
Period size: 37 Copynumber: 2.9 Consensus size: 39
7770412 AATTTGATCT
* * *
7770422 TAATATTATAAAAGTAATATTAATATTATATAAGTTATG
1 TAATATTATATAAGTTATCTTAATATTATATAAGTTATG
* ** * *
7770461 TAAT-TCGAT-T-TTTTATCTTAACATGATATAAGTTATG
1 TAATAT-TATATAAGTTATCTTAATATTATATAAGTTATG
7770498 TAATATTATATAAGTTATCTTAATATTATATAAGTTA
1 TAATATTATATAAGTTATCTTAATATTATATAAGTTA
7770535 AGAAATTGTA
Statistics
Matches: 57, Mismatches: 13, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
37 27 0.47
38 3 0.05
39 27 0.47
ACGTcount: A:0.42, C:0.04, G:0.08, T:0.47
Consensus pattern (39 bp):
TAATATTATATAAGTTATCTTAATATTATATAAGTTATG
Found at i:7772577 original size:19 final size:19
Alignment explanation
Indices: 7772553--7772594 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
7772543 GGACTACGTT
*
7772553 GGGGAACTGTTAGGGATTA
1 GGGGAAATGTTAGGGATTA
* *
7772572 GGGGAAATTTTAGGGATTT
1 GGGGAAATGTTAGGGATTA
7772591 GGGG
1 GGGG
7772595 GAGATGTCTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.24, C:0.02, G:0.45, T:0.29
Consensus pattern (19 bp):
GGGGAAATGTTAGGGATTA
Found at i:7773255 original size:230 final size:231
Alignment explanation
Indices: 7772924--7773432 Score: 747
Period size: 230 Copynumber: 2.2 Consensus size: 231
7772914 TAATACAAAT
*** *
7772924 TTGCGGCG-TTTA-ATAAAAGCGCCACTAAAACCAACTAA-ATAAACGACGCCGTTTTCCGTAAC
1 TTGCGGCGTTTTATATAAAA-CGCCACTAAATGTAA-TAAGA-AAACGGCGCCGTTTTCCGTAAC
* * *
7772986 ACCATTTCGATTTTGCGGCATTTATATATAAGCGCCACTAAATATAAGGTCAAACACAGTCGTTT
63 ACCATTTCGAGTTTGCGACATTTATATATAAACGCCACTAAATATAAGGTCAAACACAGTCGTTT
*
7773051 AAAGCAAACTCCTGTAATCTTTAAAATATATTTGCGGCGTTTTGGGTGTAACGCCACAAATATC-
128 AAAGCAAACTCCTGTAATCTTTAAAATATATTTGCGGCGTTTTGGGTGTAACGCCACAAATAACA
* * * * *
7773115 CTTGAAAACGATGCCGTTTCTGTAACAAAGAAAACATAC
193 ATGGAAAACGACGCCGTTCCCGTAACAAAGAAAACATAC
* * *
7773154 TTGCGGCGTTTTATCTAAAATGCCACTAAATGTAATAAGAAAACGGCGCCGTTTTTCGTAACACC
1 TTGCGGCGTTTTATATAAAACGCCACTAAATGTAATAAGAAAACGGCGCCGTTTTCCGTAACACC
* * * *
7773219 ATTTCGAGTTTGCGACGTTTATATATAAATGCCACTAAATATAAGGTCAAACGCAGTCGTTTAAC
66 ATTTCGAGTTTGCGACATTTATATATAAACGCCACTAAATATAAGGTCAAACACAGTCGTTTAAA
* *
7773284 GCAAACTCGTGTAATCTTTAAAATATATTTGCGGCGTTTTGGGTGTAACGCCACTAATAACAATG
131 GCAAACTCCTGTAATCTTTAAAATATATTTGCGGCGTTTTGGGTGTAACGCCACAAATAACAATG
*
7773349 GAAAACGACGCCGTTCCCGTAACAAAGAAAACATAG
196 GAAAACGACGCCGTTCCCGTAACAAAGAAAACATAC
*
7773385 TTGCGGCGTTTTGTATAAAACGCCACTAAATGTAATAAGAAAACGGCG
1 TTGCGGCGTTTTATATAAAACGCCACTAAATGTAATAAGAAAACGGCG
7773433 TTGTTTTCTT
Statistics
Matches: 249, Mismatches: 26, Indels: 7
0.88 0.09 0.02
Matches are distributed among these distances:
230 150 0.60
231 94 0.38
232 5 0.02
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (231 bp):
TTGCGGCGTTTTATATAAAACGCCACTAAATGTAATAAGAAAACGGCGCCGTTTTCCGTAACACC
ATTTCGAGTTTGCGACATTTATATATAAACGCCACTAAATATAAGGTCAAACACAGTCGTTTAAA
GCAAACTCCTGTAATCTTTAAAATATATTTGCGGCGTTTTGGGTGTAACGCCACAAATAACAATG
GAAAACGACGCCGTTCCCGTAACAAAGAAAACATAC
Found at i:7774240 original size:15 final size:16
Alignment explanation
Indices: 7774212--7774242 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
7774202 CCCTAACACG
7774212 ACCCCTATAACCCTAA
1 ACCCCTATAACCCTAA
7774228 ACCCCTA-AACCCTAA
1 ACCCCTATAACCCTAA
7774243 GTCTTAAAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.39, C:0.45, G:0.00, T:0.16
Consensus pattern (16 bp):
ACCCCTATAACCCTAA
Found at i:7774531 original size:18 final size:21
Alignment explanation
Indices: 7774508--7774556 Score: 59
Period size: 18 Copynumber: 2.5 Consensus size: 21
7774498 ATTAATCACG
7774508 ATATTAATTTG-GTG-TTT-T
1 ATATTAATTTGTGTGATTTAT
* *
7774526 ATATTACTTTGTTTGATTTAT
1 ATATTAATTTGTGTGATTTAT
7774547 ATATTAATTT
1 ATATTAATTT
7774557 AGTCGAACTA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
18 10 0.40
19 2 0.08
20 3 0.12
21 10 0.40
ACGTcount: A:0.27, C:0.02, G:0.10, T:0.61
Consensus pattern (21 bp):
ATATTAATTTGTGTGATTTAT
Found at i:7775203 original size:40 final size:39
Alignment explanation
Indices: 7775109--7775203 Score: 95
Period size: 39 Copynumber: 2.4 Consensus size: 39
7775099 CGTCGTTGGC
* * *
7775109 CTTATTTTTTTGCGGCGCTTTTTGTGAATCGCCGCTATTG
1 CTTA-TTTTTAGCGGCGCTTTTCGTGAATCGCCGCTAATG
* *
7775149 CTTATTATTAGCGGCG-TTTTCGTTAATGCGCCGCTAATG
1 CTTATTTTTAGCGGCGCTTTTCGTGAAT-CGCCGCTAATG
7775188 -TTCAATTTTTAGCGGC
1 CTT--ATTTTTAGCGGC
7775204 ATTTGTTGTC
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
38 11 0.24
39 20 0.43
40 15 0.33
ACGTcount: A:0.15, C:0.20, G:0.22, T:0.43
Consensus pattern (39 bp):
CTTATTTTTAGCGGCGCTTTTCGTGAATCGCCGCTAATG
Found at i:7781394 original size:31 final size:31
Alignment explanation
Indices: 7781359--7781441 Score: 112
Period size: 31 Copynumber: 2.7 Consensus size: 31
7781349 TTAACGACCA
* *
7781359 AGTGACTTAAATAAAAACTTTAGAGTGGTTT
1 AGTGACTTAAATAAAAACTTTAGAATAGTTT
*
7781390 AGTGACTTAAATAAAAACTTTTGAATAGTTT
1 AGTGACTTAAATAAAAACTTTAGAATAGTTT
* * *
7781421 AATGACTTAAATGAAACCTTT
1 AGTGACTTAAATAAAAACTTT
7781442 CGTATAATTC
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.41, C:0.08, G:0.14, T:0.36
Consensus pattern (31 bp):
AGTGACTTAAATAAAAACTTTAGAATAGTTT
Found at i:7788636 original size:64 final size:64
Alignment explanation
Indices: 7788557--7788684 Score: 220
Period size: 64 Copynumber: 2.0 Consensus size: 64
7788547 AAATGTTAGC
* *
7788557 ATATAATTAGCTCCACCTTTCGAAGGCACTTTGGATGACCCCCACAGATCAGAATGAATATACT
1 ATATAACTAGCTCCACCTCTCGAAGGCACTTTGGATGACCCCCACAGATCAGAATGAATATACT
* *
7788621 ATATAACTAGCTCCACCTCTCGAAGGCATTTTGGATGACCTCCACAGATCAGAATGAATATACT
1 ATATAACTAGCTCCACCTCTCGAAGGCACTTTGGATGACCCCCACAGATCAGAATGAATATACT
7788685 TTAACATTTC
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
64 60 1.00
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.27
Consensus pattern (64 bp):
ATATAACTAGCTCCACCTCTCGAAGGCACTTTGGATGACCCCCACAGATCAGAATGAATATACT
Found at i:7790728 original size:14 final size:13
Alignment explanation
Indices: 7790705--7790746 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
7790695 TAATCTTTGA
7790705 TTTATTATTTTAT
1 TTTATTATTTTAT
7790718 TTTAGTTA-TTTAT
1 TTTA-TTATTTTAT
*
7790731 TTTAATTTTTTTAT
1 TTT-ATTATTTTAT
7790745 TT
1 TT
7790747 GACTTGGATT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
13 14 0.56
14 11 0.44
ACGTcount: A:0.21, C:0.00, G:0.02, T:0.76
Consensus pattern (13 bp):
TTTATTATTTTAT
Found at i:7790744 original size:18 final size:18
Alignment explanation
Indices: 7790704--7790746 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
7790694 TTAATCTTTG
7790704 ATTTA-TTATTTTATTTT
1 ATTTATTTATTTTATTTT
*
7790721 AGTTATTTATTTTAATTTT
1 ATTTATTTATTTT-ATTTT
7790740 -TTTATTT
1 ATTTATTT
7790747 GACTTGGATT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 4 0.18
18 13 0.59
19 5 0.23
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.74
Consensus pattern (18 bp):
ATTTATTTATTTTATTTT
Found at i:7793304 original size:3 final size:3
Alignment explanation
Indices: 7793296--7793329 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
7793286 TAGTTTACTC
7793296 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
7793330 AAGCTTGATC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:7797146 original size:24 final size:24
Alignment explanation
Indices: 7797104--7797155 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
7797094 AATCAAAGTC
* * *
7797104 AAATATATTGTGCTAATAAATGCT
1 AAATATATTATACTAATAAATACT
*
7797128 AAATATATTATACTCATAAATACT
1 AAATATATTATACTAATAAATACT
7797152 AAAT
1 AAAT
7797156 CTTCTAAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.48, C:0.10, G:0.06, T:0.37
Consensus pattern (24 bp):
AAATATATTATACTAATAAATACT
Found at i:7802871 original size:21 final size:21
Alignment explanation
Indices: 7802832--7802871 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
7802822 AAATTAACTA
* *
7802832 TTGTTATTATTGTGGTTATCT
1 TTGTTATTATTATGATTATCT
*
7802853 TTGTTATTATTATTATTAT
1 TTGTTATTATTATGATTAT
7802872 TATTTATTTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.20, C:0.03, G:0.12, T:0.65
Consensus pattern (21 bp):
TTGTTATTATTATGATTATCT
Found at i:7803783 original size:106 final size:106
Alignment explanation
Indices: 7803481--7803770 Score: 427
Period size: 106 Copynumber: 2.7 Consensus size: 106
7803471 TTTCTAATTG
* *
7803481 AGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATTTTTCT
1 AGGCAATGTTTTGCGTTTGGAAATTCGAG-GAACGTGCCCTAAGGTGCTGGGTTTCGA--TTTCT
* * * *** **
7803546 CGTTTAACCAAATGGCTTAATATCCTTTTAATTTTTTTAAAATA
63 CGTTTAACCAAATAGCTAAATATCCTTTCAAAAATTACAAAATA
*
7803590 AGGCAATGTTTTGTGTTTGGAAATTCGAGGAACGTGCCCTAAGGTGCTGGGTTTCGATTTCTCGT
1 AGGCAATGTTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTGCTGGGTTTCGATTTCTCGT
*
7803655 TCAACCAAATAGCTAAATATCCTTTCAAAAATTACAAAATA
66 TTAACCAAATAGCTAAATATCCTTTCAAAAATTACAAAATA
* *
7803696 AGGTAATGTTTTGCGTTTGGAAATTTGAGGAACGTGCCCTAAGGTGCTGGGTTTCGATTTCTCGT
1 AGGCAATGTTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTGCTGGGTTTCGATTTCTCGT
7803761 TTAACCAAAT
66 TTAACCAAAT
7803771 TTCCAAATAT
Statistics
Matches: 165, Mismatches: 16, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
106 111 0.67
108 26 0.16
109 28 0.17
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.36
Consensus pattern (106 bp):
AGGCAATGTTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTGCTGGGTTTCGATTTCTCGT
TTAACCAAATAGCTAAATATCCTTTCAAAAATTACAAAATA
Found at i:7804609 original size:23 final size:23
Alignment explanation
Indices: 7804583--7804658 Score: 134
Period size: 23 Copynumber: 3.3 Consensus size: 23
7804573 AGTGTTATTG
*
7804583 ATCAGTGGTAGCTTCGACTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
7804606 ATCAGTGGTAGCTACGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
7804629 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
7804652 ATCAGTG
1 ATCAGTG
7804659 TGGTACTTAT
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 50 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:7808882 original size:20 final size:18
Alignment explanation
Indices: 7808857--7808895 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
7808847 CTTGCTGAAA
7808857 TTCTCTGCATTTTTCTATCT
1 TTCTCTGC-TTTTTCT-TCT
*
7808877 TTCTCTTCTTTTTCTTCT
1 TTCTCTGCTTTTTCTTCT
7808895 T
1 T
7808896 CTTAATTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 4 0.22
19 7 0.39
20 7 0.39
ACGTcount: A:0.05, C:0.26, G:0.03, T:0.67
Consensus pattern (18 bp):
TTCTCTGCTTTTTCTTCT
Found at i:7811629 original size:22 final size:22
Alignment explanation
Indices: 7811601--7811644 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
7811591 AGAACTGCTT
7811601 GCATCTTAATCTGCCACAACGC
1 GCATCTTAATCTGCCACAACGC
7811623 GCATCTTAATCTGCCACAACGC
1 GCATCTTAATCTGCCACAACGC
7811645 AAATCTGGTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.36, G:0.14, T:0.23
Consensus pattern (22 bp):
GCATCTTAATCTGCCACAACGC
Found at i:7811650 original size:22 final size:22
Alignment explanation
Indices: 7811603--7811650 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
7811593 AACTGCTTGC
**
7811603 ATCTTAATCTGCCACAACGCGC
1 ATCTTAATCTGCCACAACGCAA
7811625 ATCTTAATCTGCCACAACGCAA
1 ATCTTAATCTGCCACAACGCAA
7811647 ATCT
1 ATCT
7811651 GGTCAATCCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.31, C:0.33, G:0.10, T:0.25
Consensus pattern (22 bp):
ATCTTAATCTGCCACAACGCAA
Found at i:7811958 original size:24 final size:24
Alignment explanation
Indices: 7811943--7811994 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
7811933 AATCAAAGTC
7811943 AAATATATTATGCTAATAAATGCT
1 AAATATATTATGCTAATAAATGCT
* * *
7811967 AAATATATTATACTCATAAATACT
1 AAATATATTATGCTAATAAATGCT
7811991 AAAT
1 AAAT
7811995 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.50, C:0.10, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATATATTATGCTAATAAATGCT
Found at i:7819694 original size:17 final size:18
Alignment explanation
Indices: 7819672--7819709 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
7819662 ATTTACACGT
7819672 AATAAAACT-TAAATT-AA
1 AATAAAA-TATAAATTGAA
7819689 AATAAAATATAAATTGAA
1 AATAAAATATAAATTGAA
7819707 AAT
1 AAT
7819710 TTACTAACTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 1 0.05
17 13 0.68
18 5 0.26
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.29
Consensus pattern (18 bp):
AATAAAATATAAATTGAA
Found at i:7827892 original size:29 final size:31
Alignment explanation
Indices: 7827826--7827892 Score: 70
Period size: 28 Copynumber: 2.3 Consensus size: 31
7827816 TTAGACTCGG
* *
7827826 GTACCAATTTAGTTGATGAAAAAAATTTGAA
1 GTACCAATTTAGTGGATAAAAAAAATTTGAA
*
7827857 -TATCAATTT-G-GGATAAAAAAAACTTT-AA
1 GTACCAATTTAGTGGATAAAAAAAA-TTTGAA
7827885 GTACCAAT
1 GTACCAAT
7827893 CTAAGAGAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
28 12 0.40
29 10 0.33
30 8 0.27
ACGTcount: A:0.46, C:0.09, G:0.13, T:0.31
Consensus pattern (31 bp):
GTACCAATTTAGTGGATAAAAAAAATTTGAA
Found at i:7833314 original size:6 final size:6
Alignment explanation
Indices: 7833303--7833328 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
7833293 ACCGAGTGGA
7833303 CAAACT CAAACT CAAACT CAAACT CA
1 CAAACT CAAACT CAAACT CAAACT CA
7833329 GAGTCAGGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.50, C:0.35, G:0.00, T:0.15
Consensus pattern (6 bp):
CAAACT
Found at i:7838049 original size:24 final size:24
Alignment explanation
Indices: 7838022--7838068 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
7838012 AGAGGATAGT
7838022 TTAAAGAACATAAAAGAAAAAAAA
1 TTAAAGAACATAAAAGAAAAAAAA
** * *
7838046 TTAAATTACTTAAAAGGAAAAAA
1 TTAAAGAACATAAAAGAAAAAAA
7838069 TATCGGATCA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.68, C:0.04, G:0.09, T:0.19
Consensus pattern (24 bp):
TTAAAGAACATAAAAGAAAAAAAA
Found at i:7838639 original size:19 final size:19
Alignment explanation
Indices: 7838615--7838651 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
7838605 TTGAATTATA
7838615 ATTTTTATATAATTTTAAG
1 ATTTTTATATAATTTTAAG
* *
7838634 ATTTTTCTTTAATTTTAA
1 ATTTTTATATAATTTTAA
7838652 AACATACAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (19 bp):
ATTTTTATATAATTTTAAG
Found at i:7841242 original size:17 final size:17
Alignment explanation
Indices: 7841220--7841252 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7841210 GTGCTTAGTT
*
7841220 GAAAATAAAAGTGAGAG
1 GAAAATAAAAGAGAGAG
7841237 GAAAATAAAAGAGAGA
1 GAAAATAAAAGAGAGA
7841253 TCACCTAATG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.64, C:0.00, G:0.27, T:0.09
Consensus pattern (17 bp):
GAAAATAAAAGAGAGAG
Found at i:7853241 original size:6 final size:6
Alignment explanation
Indices: 7853232--7853307 Score: 50
Period size: 6 Copynumber: 12.7 Consensus size: 6
7853222 TGATTTTATT
* * * * * *
7853232 TTTTTA TTTTTA -ATTTA -ATTTA ATTTTA TGTTTA TGTTTA TTTCTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
7853278 TTTTTAA TTGTTT- TGTTTTA TTTTTA TTTT
1 TTTTT-A TT-TTTA T-TTTTA TTTTTA TTTT
7853308 CTTATACTTT
Statistics
Matches: 58, Mismatches: 7, Indels: 10
0.77 0.09 0.13
Matches are distributed among these distances:
5 9 0.16
6 41 0.71
7 5 0.09
8 3 0.05
ACGTcount: A:0.20, C:0.01, G:0.05, T:0.74
Consensus pattern (6 bp):
TTTTTA
Found at i:7856657 original size:13 final size:13
Alignment explanation
Indices: 7856639--7856664 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7856629 CTACAAATTT
7856639 TTTTGCAATGTTG
1 TTTTGCAATGTTG
7856652 TTTTGCAATGTTG
1 TTTTGCAATGTTG
7856665 GGTATTTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.08, G:0.23, T:0.54
Consensus pattern (13 bp):
TTTTGCAATGTTG
Found at i:7857543 original size:22 final size:22
Alignment explanation
Indices: 7857515--7857560 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
7857505 AATTTTCCAA
7857515 TAATCATAGAAATAACATACTT
1 TAATCATAGAAATAACATACTT
* *
7857537 TAATCATAGAAATAATATATTT
1 TAATCATAGAAATAACATACTT
7857559 TA
1 TA
7857561 GATGCTGAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.50, C:0.09, G:0.04, T:0.37
Consensus pattern (22 bp):
TAATCATAGAAATAACATACTT
Found at i:7881364 original size:41 final size:40
Alignment explanation
Indices: 7881293--7881369 Score: 100
Period size: 41 Copynumber: 1.9 Consensus size: 40
7881283 AAAATTCTTA
* *
7881293 AACCCTAAACCTTAAAACAAAATTATTTTAACAAAACCCT
1 AACCCTAAACCCTAAAACAAAATCATTTTAACAAAACCCT
* * *
7881333 AACCCTACAACCCTAAACCTAAATCATTTTAATAAAA
1 AACCCTA-AACCCTAAAACAAAATCATTTTAACAAAA
7881370 ACTCTAAACC
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
40 7 0.23
41 24 0.77
ACGTcount: A:0.49, C:0.26, G:0.00, T:0.25
Consensus pattern (40 bp):
AACCCTAAACCCTAAAACAAAATCATTTTAACAAAACCCT
Found at i:7882269 original size:29 final size:28
Alignment explanation
Indices: 7882237--7882309 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 28
7882227 TTGATCTTAT
*
7882237 TAAAAAT-TAGAAAAATTATTAAATTTTAA
1 TAAAAATATA-AAAAATTATAAAATTTT-A
*
7882266 TAAAAATATAAAAAATTGTAAAATTTTA
1 TAAAAATATAAAAAATTATAAAATTTTA
7882294 TAAAAATCATAAAAAA
1 TAAAAAT-ATAAAAAA
7882310 AATTTAACGA
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
28 8 0.20
29 30 0.75
30 2 0.05
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (28 bp):
TAAAAATATAAAAAATTATAAAATTTTA
Found at i:7882581 original size:26 final size:28
Alignment explanation
Indices: 7882551--7882603 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 28
7882541 ATTTTTTTCT
*
7882551 AATTTTTAATAA-ATTT-TTAATATTTG
1 AATTTTTAATAATATTTAATAATATTTG
*
7882577 AATTTTTATTAATATTTAATAATATTT
1 AATTTTTAATAATATTTAATAATATTT
7882604 ATAGCTTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 11 0.48
27 4 0.17
28 8 0.35
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (28 bp):
AATTTTTAATAATATTTAATAATATTTG
Found at i:7882736 original size:86 final size:85
Alignment explanation
Indices: 7882646--7882866 Score: 282
Period size: 88 Copynumber: 2.6 Consensus size: 85
7882636 TTTAATAAAT
7882646 GTAGGGGCTTAATTGCTTTTTTTTAAAGTTTGAGGGTCTTTTTTATGCATTTTGAAAGTTCAAAT
1 GTAGGGGCTTAATTGCTTTTTTTTAAAGTTTGAGGG-CTTTTTTATGCATTTTGAAAGTTCAAAT
*
7882711 AATCAATTGAGTACAAAAAAA
65 AATCAAATGAGTACAAAAAAA
*
7882732 GTAGGGGCTTAATTGCTTTTTTTGAAAAGGTTTGAGGGCATTTTTTATGCATTTTGAAAGTTCAA
1 GTAGGGGCTTAATTGCTTTTTTT-TAAA-GTTTGAGGGC-TTTTTTATGCATTTTGAAAGTTCAA
* * *
7882797 GTACTCAAATGAGTGCAAAAAAA
63 ATAATCAAATGAGTACAAAAAAA
** ** * * *
7882820 AAAGTAGCTTAATTGTTTTTTTTTTTAAGTTTGGGGGC-TTTTTATGC
1 GTAGGGGCTTAATTG-CTTTTTTTTAAAGTTTGAGGGCTTTTTTATGC
7882867 CCTTAAGCCT
Statistics
Matches: 118, Mismatches: 13, Indels: 9
0.84 0.09 0.06
Matches are distributed among these distances:
85 9 0.08
86 23 0.19
87 13 0.11
88 66 0.56
89 7 0.06
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (85 bp):
GTAGGGGCTTAATTGCTTTTTTTTAAAGTTTGAGGGCTTTTTTATGCATTTTGAAAGTTCAAATA
ATCAAATGAGTACAAAAAAA
Found at i:7882996 original size:19 final size:20
Alignment explanation
Indices: 7882961--7882999 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
7882951 AATTAGAAGC
7882961 TTAAACAATAATATAGAATT
1 TTAAACAATAATATAGAATT
7882981 TTAAA-AAT-ATATTAGAATT
1 TTAAACAATAATA-TAGAATT
7883000 AAATAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 3 0.17
19 10 0.56
20 5 0.28
ACGTcount: A:0.54, C:0.03, G:0.05, T:0.38
Consensus pattern (20 bp):
TTAAACAATAATATAGAATT
Found at i:7884485 original size:36 final size:36
Alignment explanation
Indices: 7884440--7884520 Score: 126
Period size: 36 Copynumber: 2.2 Consensus size: 36
7884430 AATTGTGACG
* * * *
7884440 TTTAATGTTTAACATTATGGTCTTTTAAATTCAAAT
1 TTTATTGTTTAAAATTATGATCTTTTAAAATCAAAT
7884476 TTTATTGTTTAAAATTATGATCTTTTAAAATCAAAT
1 TTTATTGTTTAAAATTATGATCTTTTAAAATCAAAT
7884512 TTTATTGTT
1 TTTATTGTT
7884521 GATGGGATTT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 41 1.00
ACGTcount: A:0.33, C:0.06, G:0.07, T:0.53
Consensus pattern (36 bp):
TTTATTGTTTAAAATTATGATCTTTTAAAATCAAAT
Found at i:7891128 original size:4 final size:4
Alignment explanation
Indices: 7891119--7891161 Score: 77
Period size: 4 Copynumber: 10.8 Consensus size: 4
7891109 TATAGATTGT
*
7891119 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATTC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
7891162 TATATATGTA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 37 1.00
ACGTcount: A:0.49, C:0.23, G:0.00, T:0.28
Consensus pattern (4 bp):
ATAC
Found at i:7893188 original size:4 final size:4
Alignment explanation
Indices: 7893179--7893204 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
7893169 TCCATTTTGG
7893179 AATA AATA AATA AATA AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AA
7893205 CCCGATTTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AATA
Found at i:7905153 original size:13 final size:13
Alignment explanation
Indices: 7905135--7905159 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7905125 ATAAAATTCT
7905135 GTAAATCAAAATA
1 GTAAATCAAAATA
7905148 GTAAATCAAAAT
1 GTAAATCAAAAT
7905160 GAAAACTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.08, G:0.08, T:0.24
Consensus pattern (13 bp):
GTAAATCAAAATA
Found at i:7905376 original size:33 final size:33
Alignment explanation
Indices: 7905329--7905394 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
7905319 AGTTCAAAAT
* *
7905329 GACTAACAACAGATTCCAGAAGAGAACCCCAGA
1 GACTAACAACAGATTCCAAAAAAGAACCCCAGA
* *
7905362 GACTAACAATAGATTCCAAAAAAGGACCCCAGA
1 GACTAACAACAGATTCCAAAAAAGAACCCCAGA
7905395 TGGCAATTCA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.47, C:0.26, G:0.17, T:0.11
Consensus pattern (33 bp):
GACTAACAACAGATTCCAAAAAAGAACCCCAGA
Found at i:7905693 original size:24 final size:24
Alignment explanation
Indices: 7905666--7905715 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
7905656 ACCAAATAGG
7905666 ACCTCGAAAAGTCCATCCAACCTT
1 ACCTCGAAAAGTCCATCCAACCTT
7905690 ACCTCGAAAAGTCCATCCAACCTT
1 ACCTCGAAAAGTCCATCCAACCTT
7905714 AC
1 AC
7905716 ACACTAAGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.34, C:0.38, G:0.08, T:0.20
Consensus pattern (24 bp):
ACCTCGAAAAGTCCATCCAACCTT
Found at i:7907135 original size:6 final size:6
Alignment explanation
Indices: 7907126--7907155 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
7907116 AAAAAAAAGA
7907126 ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT
1 ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT
7907156 GTTTATGTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (6 bp):
ATAAAT
Found at i:7908204 original size:28 final size:28
Alignment explanation
Indices: 7908171--7908236 Score: 114
Period size: 28 Copynumber: 2.4 Consensus size: 28
7908161 ATAAAAAATA
* *
7908171 ACCAAAATTTTATAACTTTTTTTTATTT
1 ACCAAAATATTATAAATTTTTTTTATTT
7908199 ACCAAAATATTATAAATTTTTTTTATTT
1 ACCAAAATATTATAAATTTTTTTTATTT
7908227 ACCAAAATAT
1 ACCAAAATAT
7908237 ACCAAAAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.39, C:0.11, G:0.00, T:0.50
Consensus pattern (28 bp):
ACCAAAATATTATAAATTTTTTTTATTT
Found at i:7908317 original size:27 final size:27
Alignment explanation
Indices: 7908278--7908345 Score: 91
Period size: 27 Copynumber: 2.5 Consensus size: 27
7908268 GCCTGATCAG
* *
7908278 GCCAATCACATTGGAGGCACCAAAGGT
1 GCCAATGAGATTGGAGGCACCAAAGGT
* *
7908305 GCCAATGAGATTGGCGGCACCAATGGT
1 GCCAATGAGATTGGAGGCACCAAAGGT
*
7908332 GCCAAAGAGATTGG
1 GCCAATGAGATTGG
7908346 CAGTGTAACA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.31, C:0.22, G:0.31, T:0.16
Consensus pattern (27 bp):
GCCAATGAGATTGGAGGCACCAAAGGT
Found at i:7908346 original size:27 final size:27
Alignment explanation
Indices: 7908287--7908346 Score: 93
Period size: 27 Copynumber: 2.2 Consensus size: 27
7908277 GGCCAATCAC
* *
7908287 ATTGGAGGCACCAAAGGTGCCAATGAG
1 ATTGGCGGCACCAAAGGTGCCAAAGAG
*
7908314 ATTGGCGGCACCAATGGTGCCAAAGAG
1 ATTGGCGGCACCAAAGGTGCCAAAGAG
7908341 ATTGGC
1 ATTGGC
7908347 AGTGTAACAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.30, C:0.20, G:0.33, T:0.17
Consensus pattern (27 bp):
ATTGGCGGCACCAAAGGTGCCAAAGAG
Found at i:7909567 original size:28 final size:28
Alignment explanation
Indices: 7909527--7909653 Score: 182
Period size: 28 Copynumber: 4.5 Consensus size: 28
7909517 TGATTTTCGA
*
7909527 CACTAAGTGTGCGAATTTAATTATAAAG
1 CACTAAGTGTGCGAGTTTAATTATAAAG
* *
7909555 CACTAAGTGTGCGAGTTTAATTGTAGAG
1 CACTAAGTGTGCGAGTTTAATTATAAAG
**
7909583 CACTAAGTGTGCGAGTTTAATGGTAAAG
1 CACTAAGTGTGCGAGTTTAATTATAAAG
* **
7909611 CACTAAGTGTGCGAGTTTGATTATTGAG
1 CACTAAGTGTGCGAGTTTAATTATAAAG
7909639 CACTAAGTGTGCGAG
1 CACTAAGTGTGCGAG
7909654 CTTATTAAAT
Statistics
Matches: 89, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 89 1.00
ACGTcount: A:0.31, C:0.12, G:0.27, T:0.31
Consensus pattern (28 bp):
CACTAAGTGTGCGAGTTTAATTATAAAG
Found at i:7909873 original size:17 final size:17
Alignment explanation
Indices: 7909835--7909873 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
7909825 TATATATAAT
*
7909835 ATGAATCTTTATATTAC
1 ATGATTCTTTATATTAC
7909852 ATGATTCTTTATATTAC
1 ATGATTCTTTATATTAC
7909869 ATGAT
1 ATGAT
7909874 GAGGAAATGC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.33, C:0.10, G:0.08, T:0.49
Consensus pattern (17 bp):
ATGATTCTTTATATTAC
Found at i:7910442 original size:46 final size:45
Alignment explanation
Indices: 7910390--7910790 Score: 231
Period size: 46 Copynumber: 8.6 Consensus size: 45
7910380 TTGTTATGCT
*
7910390 TAAATGCTGCCCAA-TTGTTATATGTATGCTGCCTAATTTTGATAAA
1 TAAATGCTGCCAAATTTG-TATATGTATGCTGCCTAATTTTG-TAAA
* * ** * **
7910436 TCAATGCTGTCAAATTTTGTATATACATGCTG-TTAAATTTTGTGTA
1 TAAATGCTGCCAAA-TTTGTATATGTATGCTGCCT-AATTTTGTAAA
* *
7910482 TAAATGCTGTCCAAATTTGTGTATGTATGCTGCCTAATTTTGGGTGAA
1 TAAATGCTG-CCAAATTTGTATATGTATGCTGCCTAATTTT--GTAAA
** * **
7910530 TAAATGCTGTCCAAATTTTGTATATACATGCTG-TTAAATTTTGTGTA
1 TAAATGCTG-CCAAA-TTTGTATATGTATGCTGCCT-AATTTTGTAAA
* * * *
7910577 TAAGTGCTGTCCAAATTTGTGTATGTATGCTGCCCAATTTTGGTGAA
1 TAAATGCTG-CCAAATTTGTATATGTATGCTGCCTAATTTT-GTAAA
** * * **
7910624 GCAATGCTGTCAAATTTTGTA-AT-TACATGCTG-TTATATTTTGTGTA
1 TAAATGCTGCCAAA-TTTGTATATGT--ATGCTGCCTA-ATTTTGTAAA
* * *
7910670 TAAGTGCTGTCCAAATTTGTATATGTATGCTGCCCAATTTTGGTGAA
1 TAAATGCTG-CCAAATTTGTATATGTATGCTGCCTAATTTT-GTAAA
* * ** * **
7910717 TCAATGCTGTCAAATTTTGTATATACATGCTG-TTATATTTTGTGTA
1 TAAATGCTGCCAAA-TTTGTATATGTATGCTGCCTA-ATTTTGTAAA
*
7910763 TAAGTGCTGTCCAAATTTGTAATATGTA
1 TAAATGCTG-CCAAATTTGT-ATATGTA
7910791 GTATAGTTAG
Statistics
Matches: 276, Mismatches: 55, Indels: 47
0.73 0.15 0.12
Matches are distributed among these distances:
45 1 0.00
46 117 0.42
47 114 0.41
48 24 0.09
49 20 0.07
ACGTcount: A:0.27, C:0.12, G:0.18, T:0.42
Consensus pattern (45 bp):
TAAATGCTGCCAAATTTGTATATGTATGCTGCCTAATTTTGTAAA
Found at i:7910468 original size:23 final size:23
Alignment explanation
Indices: 7910439--7910780 Score: 199
Period size: 23 Copynumber: 14.6 Consensus size: 23
7910429 TGATAAATCA
7910439 ATGCTGTCAAATTTTGTATATAC
1 ATGCTGTCAAATTTTGTATATAC
* * *
7910462 ATGCTGTTAAATTTTGTGTATAA
1 ATGCTGTCAAATTTTGTATATAC
*
7910485 ATGCTGTCCAAATTTGTGTATGT--
1 ATGCTGT-CAAATTT-TGTATATAC
* * *
7910508 ATGCTGCCTAATTTTGGGTGA-ATAA
1 ATGCTGTCAAATTTT--GT-ATATAC
7910533 ATGCTGTCCAAATTTTGTATATAC
1 ATGCTGT-CAAATTTTGTATATAC
* *
7910557 ATGCTGTTAAATTTTGTGTATA-
1 ATGCTGTCAAATTTTGTATATAC
*
7910579 AGTGCTGTCCAAATTTGTGTATGT--
1 A-TGCTGT-CAAATTT-TGTATATAC
* * *
7910603 ATGCTGCCCAATTTTGGTGA-A-GC
1 ATGCTGTCAAATTTT-GT-ATATAC
7910626 AATGCTGTCAAATTTTGTA-ATTAC
1 -ATGCTGTCAAATTTTGTATA-TAC
* * *
7910650 ATGCTGTTATATTTTGTGTATA-
1 ATGCTGTCAAATTTTGTATATAC
**
7910672 AGTGCTGTCCAAA-TTTGTATATGT
1 A-TGCTGT-CAAATTTTGTATATAC
* *
7910696 ATGCTGCCCAATTTTGGTGA-AT-C
1 ATGCTGTCAAATTTT-GT-ATATAC
7910719 AATGCTGTCAAATTTTGTATATAC
1 -ATGCTGTCAAATTTTGTATATAC
* * *
7910743 ATGCTGTTATATTTTGTGTATA-
1 ATGCTGTCAAATTTTGTATATAC
7910765 AGTGCTGTCCAAATTT
1 A-TGCTGT-CAAATTT
7910781 GTAATATGTA
Statistics
Matches: 248, Mismatches: 40, Indels: 61
0.71 0.11 0.17
Matches are distributed among these distances:
21 2 0.01
22 23 0.09
23 132 0.53
24 67 0.27
25 17 0.07
26 7 0.03
ACGTcount: A:0.26, C:0.12, G:0.19, T:0.43
Consensus pattern (23 bp):
ATGCTGTCAAATTTTGTATATAC
Found at i:7910475 original size:47 final size:47
Alignment explanation
Indices: 7910424--7910780 Score: 326
Period size: 47 Copynumber: 7.6 Consensus size: 47
7910414 TATGCTGCCT
*
7910424 AATTTTGATAAATCAATGCTGT-CAAATTTTGTATATACATGCTGTTA
1 AATTTTG-TGAATCAATGCTGTCCAAATTTTGTATATACATGCTGTTA
* * * *
7910471 AATTTTGTGTATAAATGCTGTCCAAATTTGTGTATGT--ATGCTGCCT-
1 AATTTTGTGAATCAATGCTGTCCAAATTT-TGTATATACATGCTG-TTA
*
7910517 AATTTTGGGTGAATAAATGCTGTCCAAATTTTGTATATACATGCTGTTA
1 AATTTT--GTGAATCAATGCTGTCCAAATTTTGTATATACATGCTGTTA
* * ***
7910566 AATTTTGTGTAT-AAGTGCTGTCCAAATTTGTGTATGT--ATGCTGCCC
1 AATTTTGTGAATCAA-TGCTGTCCAAATTT-TGTATATACATGCTGTTA
*
7910612 AATTTTGGTGAAGCAATGCTGT-CAAATTTTGTA-ATTACATGCTGTTA
1 AATTTT-GTGAATCAATGCTGTCCAAATTTTGTATA-TACATGCTGTTA
* * ** ***
7910659 TATTTTGTGTAT-AAGTGCTGTCCAAA-TTTGTATATGTATGCTGCCC
1 AATTTTGTGAATCAA-TGCTGTCCAAATTTTGTATATACATGCTGTTA
7910705 AATTTTGGTGAATCAATGCTGT-CAAATTTTGTATATACATGCTGTTA
1 AATTTT-GTGAATCAATGCTGTCCAAATTTTGTATATACATGCTGTTA
* *
7910752 TATTTTGTGTAT-AAGTGCTGTCCAAATTT
1 AATTTTGTGAATCAA-TGCTGTCCAAATTT
7910781 GTAATATGTA
Statistics
Matches: 251, Mismatches: 36, Indels: 46
0.75 0.11 0.14
Matches are distributed among these distances:
45 9 0.04
46 87 0.35
47 104 0.41
48 39 0.16
49 12 0.05
ACGTcount: A:0.27, C:0.12, G:0.18, T:0.43
Consensus pattern (47 bp):
AATTTTGTGAATCAATGCTGTCCAAATTTTGTATATACATGCTGTTA
Found at i:7910771 original size:70 final size:66
Alignment explanation
Indices: 7910415--7910782 Score: 224
Period size: 70 Copynumber: 5.3 Consensus size: 66
7910405 TGTTATATGT
* *
7910415 ATGCTG-CCTAATTTTGATAAATCAATGCTGTCAAATTTTGTATATACATGCTGTTAAATTTTGT
1 ATGCTGTCC-AATTTTG-TGAATCAATGCTGTCAAATTTTGTATATA-ATGCTG-TCAATTTTGT
7910479 GTATAA
62 GTAT-A
* * ** * *
7910485 ATGCTGTCCAAATTTGTGTATGTATGCTGCCTAATTTTGGGTGA-ATAAATGCTGTCCAAATTTT
1 ATGCTGTCCAATTTTGTGAATCAATGCTGTCAAATTTT--GT-ATAT-AATGCTGT-C-AATTTT
*
7910549 GTATATA
60 GTGTATA
** * * *
7910556 CATGCTGTTAAATTTTGTGTAT-AAGTGCTGTCCAAATTTGTGTATGT-ATGCTGCCCAATTTTG
1 -ATGCTGTCCAATTTTGTGAATCAA-TGCTGT-CAAATTT-TGTATATAATGCTG-TCAATTTT-
* *
7910619 GTGAAGCA
60 GTGTA-TA
* * * * * * *
7910627 ATGCTGTCAAATTTTGT-AATTACATGCTGTTATATTTTGTGTATAAGTGCTGTCCAAATTTGTA
1 ATGCTGTCCAATTTTGTGAATCA-ATGCTGTCAAATTTTGTATATAA-TGCTGT-CAATTTTGTG
*
7910691 TATGT
63 TAT-A
* *
7910696 ATGCTGCCCAATTTTGGTGAATCAATGCTGTCAAATTTTGTATATACATGCTGTTATATTTTGTG
1 ATGCTGTCCAATTTT-GTGAATCAATGCTGTCAAATTTTGTATATA-ATGCTGTCA-ATTTTGTG
7910761 TATA
63 TATA
*
7910765 AGTGCTGTCCAAATTTGT
1 A-TGCTGTCCAATTTTGT
7910783 AATATGTAGT
Statistics
Matches: 228, Mismatches: 44, Indels: 53
0.70 0.14 0.16
Matches are distributed among these distances:
68 5 0.02
69 50 0.22
70 105 0.46
71 22 0.10
72 39 0.17
73 6 0.03
74 1 0.00
ACGTcount: A:0.27, C:0.12, G:0.18, T:0.42
Consensus pattern (66 bp):
ATGCTGTCCAATTTTGTGAATCAATGCTGTCAAATTTTGTATATAATGCTGTCAATTTTGTGTAT
A
Found at i:7910783 original size:93 final size:93
Alignment explanation
Indices: 7910408--7910790 Score: 624
Period size: 93 Copynumber: 4.1 Consensus size: 93
7910398 GCCCAATTGT
* * *
7910408 TATATGTATGCTGCCTAATTTTGATAAATCAATGCTGTCAAATTTTGTATATACATGCTGTTAAA
1 TATATGTATGCTGCCCAATTTTGGTGAATCAATGCTGTCAAATTTTGTATATACATGCTGTTAAA
*
7910473 TTTTGTGTATAAATGCTGTCCAAATTTG
66 TTTTGTGTATAAGTGCTGTCCAAATTTG
* * *
7910501 TGTATGTATGCTGCCTAATTTTGGGTGAATAAATGCTGTCCAAATTTTGTATATACATGCTGTTA
1 TATATGTATGCTGCCCAATTTT-GGTGAATCAATGCTGT-CAAATTTTGTATATACATGCTGTTA
7910566 AATTTTGTGTATAAGTGCTGTCCAAATTTG
64 AATTTTGTGTATAAGTGCTGTCCAAATTTG
* * *
7910596 TGTATGTATGCTGCCCAATTTTGGTGAAGCAATGCTGTCAAATTTTGTA-ATTACATGCTGTTAT
1 TATATGTATGCTGCCCAATTTTGGTGAATCAATGCTGTCAAATTTTGTATA-TACATGCTGTTAA
7910660 ATTTTGTGTATAAGTGCTGTCCAAATTTG
65 ATTTTGTGTATAAGTGCTGTCCAAATTTG
*
7910689 TATATGTATGCTGCCCAATTTTGGTGAATCAATGCTGTCAAATTTTGTATATACATGCTGTTATA
1 TATATGTATGCTGCCCAATTTTGGTGAATCAATGCTGTCAAATTTTGTATATACATGCTGTTAAA
7910754 TTTTGTGTATAAGTGCTGTCCAAATTTG
66 TTTTGTGTATAAGTGCTGTCCAAATTTG
7910782 TAATATGTA
1 T-ATATGTA
7910791 GTATAGTTAG
Statistics
Matches: 274, Mismatches: 11, Indels: 9
0.93 0.04 0.03
Matches are distributed among these distances:
92 1 0.00
93 163 0.59
94 35 0.13
95 75 0.27
ACGTcount: A:0.27, C:0.12, G:0.18, T:0.43
Consensus pattern (93 bp):
TATATGTATGCTGCCCAATTTTGGTGAATCAATGCTGTCAAATTTTGTATATACATGCTGTTAAA
TTTTGTGTATAAGTGCTGTCCAAATTTG
Found at i:7911266 original size:19 final size:18
Alignment explanation
Indices: 7911242--7911300 Score: 73
Period size: 19 Copynumber: 3.2 Consensus size: 18
7911232 TTTAATTAAG
7911242 TAATAACTCTATTTTAATT
1 TAATAA-TCTATTTTAATT
* * *
7911261 TAATAAACTATTCTCATT
1 TAATAATCTATTTTAATT
7911279 TAATAATTCTATTTTAATT
1 TAATAA-TCTATTTTAATT
7911298 TAA
1 TAA
7911301 AAAAATTAAG
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
18 15 0.45
19 18 0.55
ACGTcount: A:0.39, C:0.10, G:0.00, T:0.51
Consensus pattern (18 bp):
TAATAATCTATTTTAATT
Found at i:7911271 original size:18 final size:19
Alignment explanation
Indices: 7911250--7911300 Score: 68
Period size: 18 Copynumber: 2.7 Consensus size: 19
7911240 AGTAATAACT
7911250 CTATTTTAATTTAATAA-A
1 CTATTTTAATTTAATAATA
* * *
7911268 CTATTCTCATTTAATAATT
1 CTATTTTAATTTAATAATA
7911287 CTATTTTAATTTAA
1 CTATTTTAATTTAA
7911301 AAAAATTAAG
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
18 15 0.56
19 12 0.44
ACGTcount: A:0.37, C:0.10, G:0.00, T:0.53
Consensus pattern (19 bp):
CTATTTTAATTTAATAATA
Found at i:7911400 original size:19 final size:18
Alignment explanation
Indices: 7911376--7911506 Score: 118
Period size: 19 Copynumber: 7.1 Consensus size: 18
7911366 TCTAATTAAG
*
7911376 TAATAACTCTGTTTTAATT
1 TAATAA-TCTATTTTAATT
* * *
7911395 TAATAAACTATTCTCATT
1 TAATAATCTATTTTAATT
7911413 TAATAACTCTATTTTAATT
1 TAATAA-TCTATTTTAATT
* * *
7911432 TAATAAACTATTCTCATT
1 TAATAATCTATTTTAATT
*
7911450 TAATAAGTATATTTTAATT
1 TAATAA-TCTATTTTAATT
* * *
7911469 TAATAAACTATTCTCATT
1 TAATAATCTATTTTAATT
*
7911487 TAATAATTTTATTTTAATT
1 TAATAA-TCTATTTTAATT
7911506 T
1 T
7911507 TAAAAAAAAT
Statistics
Matches: 87, Mismatches: 22, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
18 43 0.49
19 44 0.51
ACGTcount: A:0.37, C:0.10, G:0.02, T:0.51
Consensus pattern (18 bp):
TAATAATCTATTTTAATT
Found at i:7911415 original size:18 final size:18
Alignment explanation
Indices: 7911392--7911492 Score: 123
Period size: 18 Copynumber: 5.5 Consensus size: 18
7911382 CTCTGTTTTA
7911392 ATTTAATAAACTATTCTC
1 ATTTAATAAACTATTCTC
* * *
7911410 ATTTAATAACTCTATTTTA
1 ATTTAATAA-ACTATTCTC
7911429 ATTTAATAAACTATTCTC
1 ATTTAATAAACTATTCTC
* *
7911447 ATTTAATAAGTA-TATTTTA
1 ATTTAATAA--ACTATTCTC
7911466 ATTTAATAAACTATTCTC
1 ATTTAATAAACTATTCTC
7911484 ATTTAATAA
1 ATTTAATAA
7911493 TTTTATTTTA
Statistics
Matches: 69, Mismatches: 10, Indels: 8
0.79 0.11 0.09
Matches are distributed among these distances:
17 1 0.01
18 38 0.55
19 29 0.42
20 1 0.01
ACGTcount: A:0.41, C:0.11, G:0.01, T:0.48
Consensus pattern (18 bp):
ATTTAATAAACTATTCTC
Found at i:7911417 original size:37 final size:37
Alignment explanation
Indices: 7911376--7911506 Score: 217
Period size: 37 Copynumber: 3.5 Consensus size: 37
7911366 TCTAATTAAG
*
7911376 TAATAACTCTGTTTTAATTTAATAAACTATTCTCATT
1 TAATAACTCTATTTTAATTTAATAAACTATTCTCATT
7911413 TAATAACTCTATTTTAATTTAATAAACTATTCTCATT
1 TAATAACTCTATTTTAATTTAATAAACTATTCTCATT
* *
7911450 TAATAAGTATATTTTAATTTAATAAACTATTCTCATT
1 TAATAACTCTATTTTAATTTAATAAACTATTCTCATT
* *
7911487 TAATAATTTTATTTTAATTT
1 TAATAACTCTATTTTAATTT
7911507 TAAAAAAAAT
Statistics
Matches: 89, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 89 1.00
ACGTcount: A:0.37, C:0.10, G:0.02, T:0.51
Consensus pattern (37 bp):
TAATAACTCTATTTTAATTTAATAAACTATTCTCATT
Found at i:7911583 original size:18 final size:18
Alignment explanation
Indices: 7911560--7911623 Score: 85
Period size: 18 Copynumber: 3.5 Consensus size: 18
7911550 TAAAATAGAG
*
7911560 TTATTAAATGAGAATAGT
1 TTATTAAATAAGAATAGT
*
7911578 TTATTAAATTAA-AATAGAG
1 TTATTAAA-TAAGAATAG-T
7911597 TTATTAAATAAGAATAGT
1 TTATTAAATAAGAATAGT
7911615 TTATTAAAT
1 TTATTAAAT
7911624 TAAAATAGAG
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
18 25 0.62
19 15 0.38
ACGTcount: A:0.48, C:0.00, G:0.11, T:0.41
Consensus pattern (18 bp):
TTATTAAATAAGAATAGT
Found at i:7911587 original size:37 final size:37
Alignment explanation
Indices: 7911546--7911639 Score: 179
Period size: 37 Copynumber: 2.5 Consensus size: 37
7911536 TAATTTTTTA
*
7911546 AAATTAAAATAGAGTTATTAAATGAGAATAGTTTATT
1 AAATTAAAATAGAGTTATTAAATAAGAATAGTTTATT
7911583 AAATTAAAATAGAGTTATTAAATAAGAATAGTTTATT
1 AAATTAAAATAGAGTTATTAAATAAGAATAGTTTATT
7911620 AAATTAAAATAGAGTTATTA
1 AAATTAAAATAGAGTTATTA
7911640 CTTAATTAGA
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 56 1.00
ACGTcount: A:0.51, C:0.00, G:0.12, T:0.37
Consensus pattern (37 bp):
AAATTAAAATAGAGTTATTAAATAAGAATAGTTTATT
Found at i:7911644 original size:18 final size:19
Alignment explanation
Indices: 7911546--7911639 Score: 122
Period size: 19 Copynumber: 5.1 Consensus size: 19
7911536 TAATTTTTTA
7911546 AAATTAAAATAGAGTTATT
1 AAATTAAAATAGAGTTATT
* * *
7911565 AAATGAGAATAG-TTTATT
1 AAATTAAAATAGAGTTATT
7911583 AAATTAAAATAGAGTTATT
1 AAATTAAAATAGAGTTATT
*
7911602 AAA-TAAGAATAG-TTTATT
1 AAATTAA-AATAGAGTTATT
7911620 AAATTAAAATAGAGTTATT
1 AAATTAAAATAGAGTTATT
7911639 A
1 A
7911640 CTTAATTAGA
Statistics
Matches: 63, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
18 31 0.49
19 32 0.51
ACGTcount: A:0.51, C:0.00, G:0.12, T:0.37
Consensus pattern (19 bp):
AAATTAAAATAGAGTTATT
Found at i:7912235 original size:27 final size:27
Alignment explanation
Indices: 7912196--7912254 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
7912186 TTTTAGTCCT
7912196 TTGGCACCATTGGTGCCGCCAATCTCA
1 TTGGCACCATTGGTGCCGCCAATCTCA
* * * *
7912223 TTGGCACCTTTGGTGCCTCCAATGTGA
1 TTGGCACCATTGGTGCCGCCAATCTCA
7912250 TTGGC
1 TTGGC
7912255 CTGATCAGGC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.15, C:0.29, G:0.25, T:0.31
Consensus pattern (27 bp):
TTGGCACCATTGGTGCCGCCAATCTCA
Found at i:7912337 original size:26 final size:28
Alignment explanation
Indices: 7912305--7912365 Score: 108
Period size: 26 Copynumber: 2.2 Consensus size: 28
7912295 TTTTTTTGGT
7912305 ATATTTTGGTAAAT-AAAAAAA-TTATA
1 ATATTTTGGTAAATAAAAAAAAGTTATA
7912331 ATATTTTGGTAAATAAAAAAAAGTTATA
1 ATATTTTGGTAAATAAAAAAAAGTTATA
7912359 ATATTTT
1 ATATTTT
7912366 AGTTATTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 14 0.42
27 7 0.21
28 12 0.36
ACGTcount: A:0.51, C:0.00, G:0.08, T:0.41
Consensus pattern (28 bp):
ATATTTTGGTAAATAAAAAAAAGTTATA
Found at i:7914373 original size:43 final size:43
Alignment explanation
Indices: 7914249--7914388 Score: 183
Period size: 43 Copynumber: 3.3 Consensus size: 43
7914239 CCATTTTGAA
* * * *
7914249 TGGCCACACGGACGTGTCTCTTGACCGTGTAAGAGACACAACC
1 TGGCCACACGGACGTGTCTCTTGGCCGTGTGAGACACACGACC
* *
7914292 TGGCCACACGGGCTTGTCTCTTGGCCGTGTGAGACACACGACC
1 TGGCCACACGGACGTGTCTCTTGGCCGTGTGAGACACACGACC
*
7914335 TGGCCACACGGACGTGTCAT-TTGGCCGTGTGAGACACACGGCC
1 TGGCCACACGGACGTGTC-TCTTGGCCGTGTGAGACACACGACC
* *
7914378 TAGCTACACGG
1 TGGCCACACGG
7914389 GTGTGTGTCC
Statistics
Matches: 85, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
43 84 0.99
44 1 0.01
ACGTcount: A:0.21, C:0.31, G:0.29, T:0.19
Consensus pattern (43 bp):
TGGCCACACGGACGTGTCTCTTGGCCGTGTGAGACACACGACC
Found at i:7919746 original size:31 final size:31
Alignment explanation
Indices: 7919711--7919771 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
7919701 TGAATCAAAA
* *
7919711 TTTTGTCTCTTGATATATGGAAAGTCAAAGG
1 TTTTGCCTCTTGATATATGGAAAGCCAAAGG
*
7919742 TTTTGCCTCTTGATCTATGGAAAGCCAAAG
1 TTTTGCCTCTTGATATATGGAAAGCCAAAG
7919772 TTCCAGATGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.36
Consensus pattern (31 bp):
TTTTGCCTCTTGATATATGGAAAGCCAAAGG
Found at i:7941192 original size:21 final size:21
Alignment explanation
Indices: 7941168--7941207 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
7941158 CACCGGGCTT
7941168 CAACACCCTCA-CCATCTCCCC
1 CAACACCCTCATCC-TCTCCCC
7941189 CAACACCCTCATCCTCTCC
1 CAACACCCTCATCCTCTCC
7941208 GCCGCTGCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.23, C:0.60, G:0.00, T:0.17
Consensus pattern (21 bp):
CAACACCCTCATCCTCTCCCC
Found at i:7944472 original size:24 final size:24
Alignment explanation
Indices: 7944435--7944507 Score: 119
Period size: 24 Copynumber: 3.0 Consensus size: 24
7944425 GATAAGACAT
7944435 TTTCCACAGCTCCTCTCTTCACCC
1 TTTCCACAGCTCCTCTCTTCACCC
* *
7944459 TTTCCACTGTTCCTCTCTTCACCC
1 TTTCCACAGCTCCTCTCTTCACCC
*
7944483 TTTCCACAGCTCCTCTATTCACCC
1 TTTCCACAGCTCCTCTCTTCACCC
7944507 T
1 T
7944508 ATCGATTGCA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.12, C:0.47, G:0.04, T:0.37
Consensus pattern (24 bp):
TTTCCACAGCTCCTCTCTTCACCC
Found at i:7945320 original size:8 final size:8
Alignment explanation
Indices: 7945307--7945331 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
7945297 AATGCCGTTC
7945307 CTGTTGTT
1 CTGTTGTT
7945315 CTGTTGTT
1 CTGTTGTT
7945323 CTGTTGTT
1 CTGTTGTT
7945331 C
1 C
7945332 CTGGTAATGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.00, C:0.16, G:0.24, T:0.60
Consensus pattern (8 bp):
CTGTTGTT
Found at i:7947546 original size:15 final size:15
Alignment explanation
Indices: 7947514--7947553 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 15
7947504 ACAGAAAAGT
7947514 AAAA-CATTTT-CCA
1 AAAATCATTTTACCA
*
7947527 AAAATCATTTTACGA
1 AAAATCATTTTACCA
7947542 AAAAT-ATTTTAC
1 AAAATCATTTTAC
7947554 TGCCAATCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
13 4 0.17
14 13 0.54
15 7 0.29
ACGTcount: A:0.47, C:0.15, G:0.03, T:0.35
Consensus pattern (15 bp):
AAAATCATTTTACCA
Found at i:7952249 original size:7 final size:7
Alignment explanation
Indices: 7952237--7952262 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
7952227 AAAGTAATTT
7952237 CTTTTAC
1 CTTTTAC
7952244 CTTTTAC
1 CTTTTAC
7952251 CTTTTAC
1 CTTTTAC
7952258 CTTTT
1 CTTTT
7952263 GATTTAATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.27, G:0.00, T:0.62
Consensus pattern (7 bp):
CTTTTAC
Found at i:7952799 original size:18 final size:16
Alignment explanation
Indices: 7952762--7952791 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
7952752 TTTATAATAC
7952762 TTTATATTATATTATT
1 TTTATATTATATTATT
7952778 TTTATA-TATATTAT
1 TTTATATTATATTAT
7952792 GTAATTTAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (16 bp):
TTTATATTATATTATT
Found at i:7952939 original size:21 final size:22
Alignment explanation
Indices: 7952900--7952950 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 22
7952890 TCAATAAATA
*
7952900 AAAAATGTATAAAATAAAATAAT
1 AAAAATAT-TAAAATAAAATAAT
* *
7952923 ATAAATATTAAAA-AAAATATT
1 AAAAATATTAAAATAAAATAAT
7952944 AAAAATA
1 AAAAATA
7952951 GTATGGGCGG
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
21 13 0.54
22 5 0.21
23 6 0.25
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (22 bp):
AAAAATATTAAAATAAAATAAT
Found at i:7954982 original size:22 final size:23
Alignment explanation
Indices: 7954955--7955006 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 23
7954945 GATTAGTGAT
7954955 TTAATATAAATATAA-ATATATAA
1 TTAATAT-AATATAACATATATAA
* *
7954978 -TAATATTATTTAACATATATAA
1 TTAATATAATATAACATATATAA
7955000 TTAATAT
1 TTAATAT
7955007 GATTATTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
21 5 0.20
22 14 0.56
23 6 0.24
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (23 bp):
TTAATATAATATAACATATATAA
Found at i:7960416 original size:26 final size:24
Alignment explanation
Indices: 7960383--7960431 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 24
7960373 CAATAAGTCT
*
7960383 TTATATTTTTATTATTTTTTATATA
1 TTATATTTTAATTA-TTTTTATATA
7960408 TTATCATTTTAATTATTTTTATAT
1 TTAT-ATTTTAATTATTTTTATAT
7960432 TATCTAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 13 0.59
26 9 0.41
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (24 bp):
TTATATTTTAATTATTTTTATATA
Found at i:7961274 original size:15 final size:15
Alignment explanation
Indices: 7961254--7961287 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
7961244 ATGTGATTAA
7961254 TTTCAACTAATTTAT
1 TTTCAACTAATTTAT
* *
7961269 TTTCAATTACTTTAT
1 TTTCAACTAATTTAT
7961284 TTTC
1 TTTC
7961288 TAAAATTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.26, C:0.15, G:0.00, T:0.59
Consensus pattern (15 bp):
TTTCAACTAATTTAT
Found at i:7962113 original size:26 final size:28
Alignment explanation
Indices: 7962058--7962113 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 28
7962048 CTCTTTTATG
*
7962058 TATATAAATAAAATAATAAATATGTGAT
1 TATATAAATAAAATAATAAATATGTAAT
7962086 TATAT-AATAAAAT-ATAAAATAT-TAAT
1 TATATAAATAAAATAAT-AAATATGTAAT
7962112 TA
1 TA
7962114 AAAAGATGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
26 7 0.27
27 14 0.54
28 5 0.19
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.38
Consensus pattern (28 bp):
TATATAAATAAAATAATAAATATGTAAT
Found at i:7967865 original size:22 final size:21
Alignment explanation
Indices: 7967832--7967872 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 21
7967822 TTTTATTTTA
7967832 ATATTTTCAAAAATATTAAGAT
1 ATATTTTC-AAAATATTAAGAT
7967854 ATATCTTT-AAAATATTAAG
1 ATAT-TTTCAAAATATTAAG
7967873 TAAGAGATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 11 0.61
22 4 0.22
23 3 0.17
ACGTcount: A:0.49, C:0.05, G:0.05, T:0.41
Consensus pattern (21 bp):
ATATTTTCAAAATATTAAGAT
Found at i:7969116 original size:20 final size:21
Alignment explanation
Indices: 7969086--7969124 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
7969076 ATTAAAGGTG
*
7969086 TTTATATTTTTTAATTTAATT
1 TTTATATTTTTTAAGTTAATT
7969107 TTTA-ATTTTTTAAGTTAA
1 TTTATATTTTTTAAGTTAA
7969125 ATTTGACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.67
Consensus pattern (21 bp):
TTTATATTTTTTAAGTTAATT
Found at i:7969127 original size:21 final size:21
Alignment explanation
Indices: 7969086--7969128 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
7969076 ATTAAAGGTG
*
7969086 TTTATATTTTTTAATTTAATT
1 TTTATATTTTTTAATTAAATT
7969107 TTTA-ATTTTTTAAGTTAAATT
1 TTTATATTTTTTAA-TTAAATT
7969128 T
1 T
7969129 GACTTTTAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 9 0.45
21 11 0.55
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.67
Consensus pattern (21 bp):
TTTATATTTTTTAATTAAATT
Found at i:7969135 original size:20 final size:20
Alignment explanation
Indices: 7969091--7969135 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
7969081 AGGTGTTTAT
* * *
7969091 ATTTTTTAATTTAATTTTTA
1 ATTTTTTAAGTTAAATTTGA
7969111 ATTTTTTAAGTTAAATTTGA
1 ATTTTTTAAGTTAAATTTGA
*
7969131 CTTTT
1 ATTTT
7969136 AGTTTTTTTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.64
Consensus pattern (20 bp):
ATTTTTTAAGTTAAATTTGA
Found at i:7989654 original size:16 final size:17
Alignment explanation
Indices: 7989633--7989664 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
7989623 ATATTAGGGG
7989633 CAAAAGTAT-AATTTTA
1 CAAAAGTATGAATTTTA
7989649 CAAAAGTATGAATTTT
1 CAAAAGTATGAATTTT
7989665 GGACTAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.47, C:0.06, G:0.09, T:0.38
Consensus pattern (17 bp):
CAAAAGTATGAATTTTA
Found at i:8002921 original size:29 final size:29
Alignment explanation
Indices: 8002860--8002922 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
8002850 CAAAGTATTA
*
8002860 AATAATTTATTAAAATAATAAATTATATC
1 AATAATTTATTAAAATAATAAATTAGATC
*
8002889 AATAATTTATT-ATATGAATAAATATAGAT-
1 AATAATTTATTAAAAT-AATAAAT-TAGATC
8002918 AATAA
1 AATAA
8002923 AATATGTATT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
28 3 0.10
29 23 0.77
30 4 0.13
ACGTcount: A:0.56, C:0.02, G:0.03, T:0.40
Consensus pattern (29 bp):
AATAATTTATTAAAATAATAAATTAGATC
Found at i:8002999 original size:22 final size:21
Alignment explanation
Indices: 8002946--8003003 Score: 57
Period size: 22 Copynumber: 2.7 Consensus size: 21
8002936 AATAATATTG
*
8002946 AAAAATATAATA-TTTTAAATT
1 AAAAATA-AATATTTTTAAAAT
8002967 AAAATATTAAATATTTTTAAAAAT
1 AAAA-A-TAAATATTTTT-AAAAT
8002991 AAAAATAAA-ATTT
1 AAAAATAAATATTT
8003004 ATTATCAATA
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
21 8 0.25
22 9 0.28
23 7 0.22
24 8 0.25
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (21 bp):
AAAAATAAATATTTTTAAAAT
Found at i:8003001 original size:23 final size:21
Alignment explanation
Indices: 8002946--8003001 Score: 58
Period size: 23 Copynumber: 2.5 Consensus size: 21
8002936 AATAATATTG
* *
8002946 AAAAATATAATATTTTAAATT
1 AAAAATAAAATATTTTAAAAT
*
8002967 AAAATATTAAATATTTTTAAAAAT
1 AAAA-ATAAAATA-TTTT-AAAAT
8002991 AAAAATAAAAT
1 AAAAATAAAAT
8003002 TTATTATCAA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
21 4 0.14
22 6 0.21
23 10 0.36
24 8 0.29
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (21 bp):
AAAAATAAAATATTTTAAAAT
Found at i:8007787 original size:26 final size:26
Alignment explanation
Indices: 8007738--8007787 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
8007728 GAAGCTTCGG
* * *
8007738 AGAGCCATTAATTAGGAAGTTCACAA
1 AGAGCCATTAAATAGAAAGCTCACAA
*
8007764 AGAGCCTTTAAATAGAAAGCTCAC
1 AGAGCCATTAAATAGAAAGCTCAC
8007788 GAAGGGCCCT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.42, C:0.18, G:0.18, T:0.22
Consensus pattern (26 bp):
AGAGCCATTAAATAGAAAGCTCACAA
Found at i:8018585 original size:33 final size:33
Alignment explanation
Indices: 8018547--8018612 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
8018537 AATTTCATCC
8018547 TTTTCTTTAATTAATTTTCCATGGATGAATCAT
1 TTTTCTTTAATTAATTTTCCATGGATGAATCAT
8018580 TTTTCTTTAATTAATTTTCCATGGATGAATCAT
1 TTTTCTTTAATTAATTTTCCATGGATGAATCAT
8018613 CATACTTATC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.27, C:0.12, G:0.09, T:0.52
Consensus pattern (33 bp):
TTTTCTTTAATTAATTTTCCATGGATGAATCAT
Found at i:8022245 original size:18 final size:17
Alignment explanation
Indices: 8022224--8022300 Score: 57
Period size: 18 Copynumber: 4.3 Consensus size: 17
8022214 TTTATAAATT
*
8022224 TTTAAAACATTATTAAAA
1 TTTAAAA-AATATTAAAA
8022242 TTTATAAAAATATTAAAA
1 TTTA-AAAAATATTAAAA
* *
8022260 -TTAAAAAAAATAAAAA
1 TTTAAAAAATATTAAAA
*
8022276 TTAATAAAAATCATTTAAAA
1 TTTA-AAAAAT-A-TTAAAA
*
8022296 GTTAA
1 TTTAA
8022301 CTCCAAAATT
Statistics
Matches: 46, Mismatches: 8, Indels: 9
0.73 0.13 0.14
Matches are distributed among these distances:
16 11 0.24
17 5 0.11
18 18 0.39
19 5 0.11
20 7 0.15
ACGTcount: A:0.62, C:0.03, G:0.01, T:0.34
Consensus pattern (17 bp):
TTTAAAAAATATTAAAA
Found at i:8022275 original size:16 final size:16
Alignment explanation
Indices: 8022237--8022286 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
8022227 AAAACATTAT
* *
8022237 TAAAATTTATAAAAATA
1 TAAAAATTA-AAAAAAA
*
8022254 TTAAAATTAAAAAAAA
1 TAAAAATTAAAAAAAA
*
8022270 TAAAAATTAATAAAAA
1 TAAAAATTAAAAAAAA
8022286 T
1 T
8022287 CATTTAAAAG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
16 21 0.75
17 7 0.25
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (16 bp):
TAAAAATTAAAAAAAA
Found at i:8022447 original size:13 final size:12
Alignment explanation
Indices: 8022425--8022451 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
8022415 TTTTTATAAG
8022425 TTTTAAAAAAAA
1 TTTTAAAAAAAA
8022437 TTTTAAAAAAAA
1 TTTTAAAAAAAA
8022449 TTT
1 TTT
8022452 AAGTATAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (12 bp):
TTTTAAAAAAAA
Found at i:8033167 original size:6 final size:6
Alignment explanation
Indices: 8033156--8033181 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
8033146 GAGGAATTAA
8033156 TTGGTT TTGGTT TTGGTT TTGGTT TT
1 TTGGTT TTGGTT TTGGTT TTGGTT TT
8033182 TAATTTTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69
Consensus pattern (6 bp):
TTGGTT
Found at i:8033860 original size:30 final size:30
Alignment explanation
Indices: 8033798--8033861 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
8033788 CACAGAAGCC
* * **
8033798 TGTGTTGTACACGGGCGGTCCACACGGTCG
1 TGTGCTGTACACAGGCGGTCCACACGACCG
8033828 TGTGCTGTACACAGGCGGTCCACACGACCG
1 TGTGCTGTACACAGGCGGTCCACACGACCG
8033858 TGTG
1 TGTG
8033862 TAATTGGGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.16, C:0.28, G:0.34, T:0.22
Consensus pattern (30 bp):
TGTGCTGTACACAGGCGGTCCACACGACCG
Found at i:8035586 original size:19 final size:19
Alignment explanation
Indices: 8035562--8035601 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
8035552 GTGTAGTTAA
* * *
8035562 TAAATTATTATTTAATTTT
1 TAAATTAATATCTAAATTT
8035581 TAAATTAATATCTAAATTT
1 TAAATTAATATCTAAATTT
8035600 TA
1 TA
8035602 TAAAATTTTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (19 bp):
TAAATTAATATCTAAATTT
Found at i:8037536 original size:3 final size:3
Alignment explanation
Indices: 8037528--8037588 Score: 92
Period size: 3 Copynumber: 21.3 Consensus size: 3
8037518 TTTAGCAATT
*
8037528 TTA TTA TTA TTA TCA -TA TT- TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
8037574 TTA TTA -TA TTA TTA T
1 TTA TTA TTA TTA TTA T
8037589 ATAATAGCTT
Statistics
Matches: 53, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
2 5 0.09
3 48 0.91
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:8041750 original size:34 final size:34
Alignment explanation
Indices: 8041712--8041806 Score: 104
Period size: 34 Copynumber: 2.8 Consensus size: 34
8041702 AAAAAAAGGG
8041712 CAAAAAGAAGGAAAAAAAAAAGAAAAATCAAAGT
1 CAAAAAGAAGGAAAAAAAAAAGAAAAATCAAAGT
** **
8041746 C-AAAAGAAAAAAAGAAAAAAAGATCAATCAAAGT
1 CAAAAAGAAGGAAA-AAAAAAAGAAAAATCAAAGT
* *
8041780 CAAAAATAAGAGAAAAAGAAAA-AAAAA
1 CAAAAAGAAG-GAAAAAAAAAAGAAAAA
8041807 GAGAAAAGGA
Statistics
Matches: 48, Mismatches: 10, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
33 10 0.21
34 23 0.48
35 12 0.25
36 3 0.06
ACGTcount: A:0.75, C:0.06, G:0.13, T:0.06
Consensus pattern (34 bp):
CAAAAAGAAGGAAAAAAAAAAGAAAAATCAAAGT
Done.