Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62811768
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 736185 characters in sequence are not A, C, G, or T
File 31 of 211
Found at i:8254110 original size:3 final size:3
Alignment explanation
Indices: 8254104--8254142 Score: 53
Period size: 3 Copynumber: 13.0 Consensus size: 3
8254094 CAGCAGCAGC
*
8254104 AGA AGA AGA AGA TGA AGA AGA AGA A-A AGAA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AG-A AGA AGA AGA
8254143 TCTGATATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
2 2 0.06
3 27 0.84
4 3 0.09
ACGTcount: A:0.67, C:0.00, G:0.31, T:0.03
Consensus pattern (3 bp):
AGA
Found at i:8256545 original size:20 final size:20
Alignment explanation
Indices: 8256519--8256578 Score: 68
Period size: 22 Copynumber: 2.9 Consensus size: 20
8256509 GGGTTTAGGG
8256519 TTTTTTTAATATATTTTTTAA
1 TTTTTTT-ATATATTTTTTAA
**
8256540 TTTTTTTATATAATCTTTAGAA
1 TTTTTTTATAT-AT-TTTTTAA
8256562 TTTTTTTATA-ATTTTTT
1 TTTTTTTATATATTTTTT
8256579 TAGTTATTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
19 3 0.09
20 6 0.18
21 9 0.27
22 15 0.45
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.70
Consensus pattern (20 bp):
TTTTTTTATATATTTTTTAA
Found at i:8256605 original size:20 final size:20
Alignment explanation
Indices: 8256582--8256651 Score: 87
Period size: 20 Copynumber: 3.7 Consensus size: 20
8256572 ATTTTTTTAG
8256582 TTATTTTAAAATTTCTAATA
1 TTATTTTAAAATTTCTAATA
*
8256602 TTATTTTTAAA---CT-ATA
1 TTATTTTAAAATTTCTAATA
8256618 -TATTTTAAAATTTCTAATA
1 TTATTTTAAAATTTCTAATA
8256637 TTATTTTTAAAATTT
1 TTA-TTTTAAAATTT
8256652 TGAAATTATT
Statistics
Matches: 42, Mismatches: 2, Indels: 11
0.76 0.04 0.20
Matches are distributed among these distances:
15 9 0.21
16 3 0.07
17 2 0.05
18 2 0.05
19 3 0.07
20 12 0.29
21 11 0.26
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (20 bp):
TTATTTTAAAATTTCTAATA
Found at i:8256611 original size:21 final size:21
Alignment explanation
Indices: 8256585--8256651 Score: 85
Period size: 21 Copynumber: 3.5 Consensus size: 21
8256575 TTTTTAGTTA
8256585 TTTTAAAATTTCTAATATTAT
1 TTTTAAAATTTCTAATATTAT
8256606 TTTT-AAA---CT-ATA-TA-
1 TTTTAAAATTTCTAATATTAT
8256620 TTTTAAAATTTCTAATATTAT
1 TTTTAAAATTTCTAATATTAT
8256641 TTTTAAAATTT
1 TTTTAAAATTT
8256652 TGAAATTATT
Statistics
Matches: 39, Mismatches: 0, Indels: 14
0.74 0.00 0.26
Matches are distributed among these distances:
14 4 0.10
15 5 0.13
16 3 0.08
17 2 0.05
18 2 0.05
19 3 0.08
20 5 0.13
21 15 0.38
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (21 bp):
TTTTAAAATTTCTAATATTAT
Found at i:8262378 original size:22 final size:21
Alignment explanation
Indices: 8262336--8262380 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
8262326 AAAATTGAGT
*
8262336 GAGAAATTAAGAGGGAATTGA
1 GAGAAATTAAGAGAGAATTGA
* *
8262357 GAGAAATTTGAGAGAGATTTGA
1 GAGAAA-TTAAGAGAGAATTGA
8262379 GA
1 GA
8262381 ATGAGAGAGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.44, C:0.00, G:0.33, T:0.22
Consensus pattern (21 bp):
GAGAAATTAAGAGAGAATTGA
Found at i:8275569 original size:31 final size:31
Alignment explanation
Indices: 8275529--8275597 Score: 95
Period size: 31 Copynumber: 2.2 Consensus size: 31
8275519 AAAATCCAAT
* *
8275529 AATCTCAGTTGAATTATTAT-ATTGATACTAA
1 AATCCCAGTTGAATTATTATGA-TAATACTAA
*
8275560 AATCCCAGTTGAATTATTATGATAATGCTAA
1 AATCCCAGTTGAATTATTATGATAATACTAA
8275591 AATCCCA
1 AATCCCA
8275598 CCAACACAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
31 33 0.97
32 1 0.03
ACGTcount: A:0.39, C:0.14, G:0.10, T:0.36
Consensus pattern (31 bp):
AATCCCAGTTGAATTATTATGATAATACTAA
Found at i:8276943 original size:18 final size:19
Alignment explanation
Indices: 8276906--8276944 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
8276896 ATTTTAAATT
*
8276906 TATAAAAAATATTAATTAA
1 TATAAAAAATATCAATTAA
*
8276925 TATAAAAATTATCAA-TAA
1 TATAAAAAATATCAATTAA
8276943 TA
1 TA
8276945 CTTCATAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.36
Consensus pattern (19 bp):
TATAAAAAATATCAATTAA
Found at i:8277684 original size:3 final size:3
Alignment explanation
Indices: 8277676--8277700 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
8277666 TTATTAGTGT
8277676 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
8277701 GGGAAGATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:8282382 original size:11 final size:11
Alignment explanation
Indices: 8282333--8282383 Score: 59
Period size: 11 Copynumber: 4.5 Consensus size: 11
8282323 ATTAAATATG
8282333 AATTTGAGAGA
1 AATTTGAGAGA
*
8282344 AATTTAGAAAGA
1 AATTT-GAGAGA
8282356 AA-TTGAGAGGA
1 AATTTGAGA-GA
8282367 AATTTGAGAGA
1 AATTTGAGAGA
*
8282378 GATTTG
1 AATTTG
8282384 TTTGTGAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
10 3 0.09
11 18 0.53
12 13 0.38
ACGTcount: A:0.45, C:0.00, G:0.27, T:0.27
Consensus pattern (11 bp):
AATTTGAGAGA
Found at i:8288357 original size:58 final size:58
Alignment explanation
Indices: 8288293--8288423 Score: 160
Period size: 57 Copynumber: 2.3 Consensus size: 58
8288283 ACAAAAATGG
* *
8288293 TGAAAATGAAGAAATGAGAAACATTTGGAAATGATTATGATTTTCTCCAAAAT-AAAAA
1 TGAAAAT-AAGAAATGAGAAACATTTGGAAATGAATATGATTTTATCCAAAATGAAAAA
* * * *
8288351 TGAAAATAGAGAAATG-GAATCATTTGGAAATGAATGTGGTTTTATTCAAAATGAAAAA
1 TGAAAATA-AGAAATGAGAAACATTTGGAAATGAATATGATTTTATCCAAAATGAAAAA
*
8288409 TAAAAATAA-AAATGA
1 TGAAAATAAGAAATGA
8288424 CCTGGAAATG
Statistics
Matches: 63, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
56 5 0.08
57 32 0.51
58 26 0.41
ACGTcount: A:0.51, C:0.05, G:0.17, T:0.27
Consensus pattern (58 bp):
TGAAAATAAGAAATGAGAAACATTTGGAAATGAATATGATTTTATCCAAAATGAAAAA
Found at i:8292955 original size:3 final size:3
Alignment explanation
Indices: 8292947--8292994 Score: 89
Period size: 3 Copynumber: 16.3 Consensus size: 3
8292937 TGGTTTGAAG
8292947 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA G-A GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
8292994 G
1 G
8292995 GCCAATATGA
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.05
3 42 0.95
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:8302882 original size:14 final size:15
Alignment explanation
Indices: 8302857--8302885 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
8302847 ATTAATTTTG
8302857 ATCAAGTCAAATTAA
1 ATCAAGTCAAATTAA
8302872 ATCAA-TCAAATTAA
1 ATCAAGTCAAATTAA
8302886 TTAAAATTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.55, C:0.14, G:0.03, T:0.28
Consensus pattern (15 bp):
ATCAAGTCAAATTAA
Found at i:8306286 original size:23 final size:23
Alignment explanation
Indices: 8306259--8306881 Score: 277
Period size: 23 Copynumber: 26.7 Consensus size: 23
8306249 ACTACATATT
8306259 ACAAATTTGGACAGCACT-TATAC
1 ACAAATTTGGACAGCA-TGTATAC
* * *
8306282 ACAAAATAT-AACAGCATGTATAT
1 AC-AAATTTGGACAGCATGTATAC
*
8306305 ACAAAATTTGG-CAGCAT-TGATTC
1 AC-AAATTTGGACAGCATGT-ATAC
* * ** *
8306328 ACCAAAATTGGGCAGCATACATAT
1 A-CAAATTTGGACAGCATGTATAC
8306352 ACAAATTTGGACAGCACT-TATAC
1 ACAAATTTGGACAGCA-TGTATAC
* *
8306375 ACAAAATAT-AACAGCATGTATGTAC
1 AC-AAATTTGGACAGCATGTA--TAC
8306400 A-AAATTT-GACAGCATTGCT-T-C
1 ACAAATTTGGACAGCA-TG-TATAC
* * **
8306421 ACCAAAATTGGGCAGCATACATAC
1 A-CAAATTTGGACAGCATGTATAC
8306445 ACAAATTTGGACAGCACT-TATAC
1 ACAAATTTGGACAGCA-TGTATAC
* * *
8306468 ACAAAATTT-AATAGCATGTATAT
1 AC-AAATTTGGACAGCATGTATAC
* *
8306491 ACAAAATTGGACAGCAT-TGATTC
1 ACAAATTTGGACAGCATGT-ATAC
* * ** *
8306514 ACCAAAATTGGGCAGCATACATAT
1 A-CAAATTTGGACAGCATGTATAC
8306538 ACAAATTTGGACAGCACT-TATAC
1 ACAAATTTGGACAGCA-TGTATAC
* * *
8306561 ACAAAATAT-AACAGCATGTATAT
1 AC-AAATTTGGACAGCATGTATAC
* *
8306584 ACAAAATTGGACAGCATTTATTCAC
1 ACAAATTTGGACAGCATGTA-T-AC
* * **
8306609 CCAAAATTAGG-CAGCATACATAC
1 AC-AAATTTGGACAGCATGTATAC
*
8306632 ACAAATTTGGACAGCATTTATAC
1 ACAAATTTGGACAGCATGTATAC
* * *
8306655 ACAAAATTT-AATAGCATGTATAT
1 AC-AAATTTGGACAGCATGTATAC
* *
8306678 ACAAAATTGGACAGCAT-TGATTC
1 ACAAATTTGGACAGCATGT-ATAC
* * ** *
8306701 ACCAAAATTGGGCAGCATACATAT
1 A-CAAATTTGGACAGCATGTATAC
*
8306725 ACAAATTTAGACAGCACT-TATAC
1 ACAAATTTGGACAGCA-TGTATAC
* * *
8306748 ACAAAATAT-AACAGCATGTATAT
1 AC-AAATTTGGACAGCATGTATAC
*
8306771 ACAAAATTGGACAGCAT-TAATTCAC
1 ACAAATTTGGACAGCATGT-A-T-AC
* * **
8306796 CCAAAATTAGG-CAGCATACATAC
1 AC-AAATTTGGACAGCATGTATAC
*
8306819 ACAAATTTGGACAGCATTTATAC
1 ACAAATTTGGACAGCATGTATAC
* *
8306842 ACAAAATTT-AACAGCATGTATAT
1 AC-AAATTTGGACAGCATGTATAC
8306865 ACAAAATTT-GACAGCAT
1 AC-AAATTTGGACAGCAT
8306882 TGATTTATCA
Statistics
Matches: 454, Mismatches: 96, Indels: 100
0.70 0.15 0.15
Matches are distributed among these distances:
21 2 0.00
22 42 0.09
23 273 0.60
24 102 0.22
25 23 0.05
26 12 0.03
ACGTcount: A:0.43, C:0.18, G:0.13, T:0.26
Consensus pattern (23 bp):
ACAAATTTGGACAGCATGTATAC
Found at i:8306362 original size:93 final size:93
Alignment explanation
Indices: 8306251--8306912 Score: 1092
Period size: 93 Copynumber: 7.1 Consensus size: 93
8306241 CTAACTATAC
8306251 TACATATTACAAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATATACAAAATTTGG
1 TACATA-TACAAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATATACAAAA-TTGG
8306316 -CAGCATTGATTCACCAAAATTGGGCAGCA
64 ACAGCATTGATTCACCAAAATTGGGCAGCA
* *
8306345 TACATATACAAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATGTACAAAATTTGAC
1 TACATATACAAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATATACAAAATTGGAC
*
8306410 AGCATTGCTTCACCAAAATTGGGCAGCA
66 AGCATTGATTCACCAAAATTGGGCAGCA
* * *
8306438 TACATACACAAATTTGGACAGCACTTATACACAAAATTTAATAGCATGTATATACAAAATTGGAC
1 TACATATACAAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATATACAAAATTGGAC
8306503 AGCATTGATTCACCAAAATTGGGCAGCA
66 AGCATTGATTCACCAAAATTGGGCAGCA
8306531 TACATATACAAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATATACAAAATTGGAC
1 TACATATACAAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATATACAAAATTGGAC
* *
8306596 AGCATTTATTCACCCAAAATTAGGCAGCA
66 AGCATTGATTCA-CCAAAATTGGGCAGCA
* * * *
8306625 TACATACACAAATTTGGACAGCATTTATACACAAAATTTAATAGCATGTATATACAAAATTGGAC
1 TACATATACAAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATATACAAAATTGGAC
8306690 AGCATTGATTCACCAAAATTGGGCAGCA
66 AGCATTGATTCACCAAAATTGGGCAGCA
*
8306718 TACATATACAAATTTAGACAGCACTTATACACAAAATATAACAGCATGTATATACAAAATTGGAC
1 TACATATACAAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATATACAAAATTGGAC
* *
8306783 AGCATTAATTCACCCAAAATTAGGCAGCA
66 AGCATTGATTCA-CCAAAATTGGGCAGCA
* * * *
8306812 TACATACACAAATTTGGACAGCATTTATACACAAAATTTAACAGCATGTATATACAAAATTTGAC
1 TACATATACAAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATATACAAAATTGGAC
* *
8306877 AGCATTGATTTATCAAAATTGGGCAGCA
66 AGCATTGATTCACCAAAATTGGGCAGCA
8306905 TACATATA
1 TACATATA
8306913 ACAATTGGGC
Statistics
Matches: 528, Mismatches: 37, Indels: 7
0.92 0.06 0.01
Matches are distributed among these distances:
92 3 0.01
93 347 0.66
94 178 0.34
ACGTcount: A:0.43, C:0.18, G:0.13, T:0.26
Consensus pattern (93 bp):
TACATATACAAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATATACAAAATTGGAC
AGCATTGATTCACCAAAATTGGGCAGCA
Found at i:8306708 original size:187 final size:187
Alignment explanation
Indices: 8306259--8306912 Score: 1150
Period size: 187 Copynumber: 3.5 Consensus size: 187
8306249 ACTACATATT
*
8306259 ACAAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATATACAAAATTTGG-CAGCATT
1 ACAAATTTGGACAGCACTTATACACAAAATTTAACAGCATGTATATACAAAA-TTGGACAGCATT
8306323 GATTCACCAAAATTGGGCAGCATACATATACAAATTTGGACAGCACTTATACACAAAATATAACA
65 GATTCACCAAAATTGGGCAGCATACATATACAAATTTGGACAGCACTTATACACAAAATATAACA
* * ** *
8306388 GCATGTATGTACAAAATTTGACAGCATTGCTTCA-CCAAAATTGGGCAGCATACATAC
130 GCATGTATATACAAAATTGGACAGCATTAATTCACCCAAAATTAGGCAGCATACATAC
*
8306445 ACAAATTTGGACAGCACTTATACACAAAATTTAATAGCATGTATATACAAAATTGGACAGCATTG
1 ACAAATTTGGACAGCACTTATACACAAAATTTAACAGCATGTATATACAAAATTGGACAGCATTG
8306510 ATTCACCAAAATTGGGCAGCATACATATACAAATTTGGACAGCACTTATACACAAAATATAACAG
66 ATTCACCAAAATTGGGCAGCATACATATACAAATTTGGACAGCACTTATACACAAAATATAACAG
*
8306575 CATGTATATACAAAATTGGACAGCATTTATTCACCCAAAATTAGGCAGCATACATAC
131 CATGTATATACAAAATTGGACAGCATTAATTCACCCAAAATTAGGCAGCATACATAC
* *
8306632 ACAAATTTGGACAGCATTTATACACAAAATTTAATAGCATGTATATACAAAATTGGACAGCATTG
1 ACAAATTTGGACAGCACTTATACACAAAATTTAACAGCATGTATATACAAAATTGGACAGCATTG
*
8306697 ATTCACCAAAATTGGGCAGCATACATATACAAATTTAGACAGCACTTATACACAAAATATAACAG
66 ATTCACCAAAATTGGGCAGCATACATATACAAATTTGGACAGCACTTATACACAAAATATAACAG
8306762 CATGTATATACAAAATTGGACAGCATTAATTCACCCAAAATTAGGCAGCATACATAC
131 CATGTATATACAAAATTGGACAGCATTAATTCACCCAAAATTAGGCAGCATACATAC
* *
8306819 ACAAATTTGGACAGCATTTATACACAAAATTTAACAGCATGTATATACAAAATTTGACAGCATTG
1 ACAAATTTGGACAGCACTTATACACAAAATTTAACAGCATGTATATACAAAATTGGACAGCATTG
* *
8306884 ATTTATCAAAATTGGGCAGCATACATATA
66 ATTCACCAAAATTGGGCAGCATACATATA
8306913 ACAATTGGGC
Statistics
Matches: 452, Mismatches: 14, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
185 4 0.01
186 152 0.34
187 296 0.65
ACGTcount: A:0.43, C:0.18, G:0.13, T:0.26
Consensus pattern (187 bp):
ACAAATTTGGACAGCACTTATACACAAAATTTAACAGCATGTATATACAAAATTGGACAGCATTG
ATTCACCAAAATTGGGCAGCATACATATACAAATTTGGACAGCACTTATACACAAAATATAACAG
CATGTATATACAAAATTGGACAGCATTAATTCACCCAAAATTAGGCAGCATACATAC
Found at i:8307683 original size:28 final size:28
Alignment explanation
Indices: 8307651--8307773 Score: 174
Period size: 28 Copynumber: 4.4 Consensus size: 28
8307641 ATTTAATAAG
* * *
8307651 CTCGCACACTTAGTGCTCAATAATCAAA
1 CTCGCACACTTAGTGCTCTACAATTAAA
* *
8307679 CTCGCACACTTAGTGCTTTACCATTAAA
1 CTCGCACACTTAGTGCTCTACAATTAAA
8307707 CTCGCACACTTAGTGCTCTACAATTAAA
1 CTCGCACACTTAGTGCTCTACAATTAAA
* *
8307735 CTCGCACACTTAGTGCTTTATAATTAAA
1 CTCGCACACTTAGTGCTCTACAATTAAA
*
8307763 TTCGCACACTT
1 CTCGCACACTT
8307774 TGTGTCGAAA
Statistics
Matches: 85, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 85 1.00
ACGTcount: A:0.31, C:0.28, G:0.11, T:0.31
Consensus pattern (28 bp):
CTCGCACACTTAGTGCTCTACAATTAAA
Found at i:8307717 original size:56 final size:56
Alignment explanation
Indices: 8307651--8307773 Score: 192
Period size: 56 Copynumber: 2.2 Consensus size: 56
8307641 ATTTAATAAG
* *
8307651 CTCGCACACTTAGTGCTCAATAATCAAACTCGCACACTTAGTGCTTTACCATTAAA
1 CTCGCACACTTAGTGCTCAACAATCAAACTCGCACACTTAGTGCTTTACAATTAAA
* * *
8307707 CTCGCACACTTAGTGCTCTACAATTAAACTCGCACACTTAGTGCTTTATAATTAAA
1 CTCGCACACTTAGTGCTCAACAATCAAACTCGCACACTTAGTGCTTTACAATTAAA
*
8307763 TTCGCACACTT
1 CTCGCACACTT
8307774 TGTGTCGAAA
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
56 61 1.00
ACGTcount: A:0.31, C:0.28, G:0.11, T:0.31
Consensus pattern (56 bp):
CTCGCACACTTAGTGCTCAACAATCAAACTCGCACACTTAGTGCTTTACAATTAAA
Found at i:8308400 original size:9 final size:9
Alignment explanation
Indices: 8308386--8308450 Score: 78
Period size: 9 Copynumber: 7.1 Consensus size: 9
8308376 GATTAAAAAA
8308386 TACCCGAAT
1 TACCCGAAT
8308395 TACCCGAAT
1 TACCCGAAT
8308404 TACCCGAAT
1 TACCCGAAT
*
8308413 TAACCGAAT
1 TACCCGAAT
* *
8308422 TA-CTGAAAAA
1 TACCCG--AAT
8308432 TACCCGAAT
1 TACCCGAAT
8308441 TACCCGAAT
1 TACCCGAAT
8308450 T
1 T
8308451 TTTTTTTATT
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
8 2 0.04
9 40 0.83
10 4 0.08
11 2 0.04
ACGTcount: A:0.38, C:0.28, G:0.11, T:0.23
Consensus pattern (9 bp):
TACCCGAAT
Found at i:8308610 original size:13 final size:13
Alignment explanation
Indices: 8308592--8308621 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
8308582 TTTTAGTTTT
8308592 ATTGGGTTGAGTA
1 ATTGGGTTGAGTA
*
8308605 ATTGGGTTGGGTA
1 ATTGGGTTGAGTA
8308618 ATTG
1 ATTG
8308622 AGTTTGGGCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.20, C:0.00, G:0.40, T:0.40
Consensus pattern (13 bp):
ATTGGGTTGAGTA
Found at i:8311365 original size:228 final size:230
Alignment explanation
Indices: 8311130--8311656 Score: 549
Period size: 230 Copynumber: 2.3 Consensus size: 230
8311120 AGCGTTTTGG
* * * *
8311130 TCTTGATGTATAATATAATTACTGGCGCTT-ATAATACAA-CGCCGCTAAAT-ATCAGTATTAGC
1 TCTTGATGTATAATAGAATTACTGGCG-TTCACAAGA-AATCACCGCTAAATCAT-AGTATTAGC
*
8311192 GGCGCTT-CT-AGTTAAGCGCCGCAAGATAT-GCACACCAAAACG-TAGAGCTT-GATATTGAGG
63 GGCGCTTGCTAAG--AAGCGCCGCAAGATATAGCA-ACCAAAACGCT-GAGCTTAGATATTGACG
* *
8311252 TATATTAG-ATGTAGTGGCGCTTT-C-AGAAAACG-CTGCAAAAGT-ATACTATTAGCGGCGCTT
124 TATACTAGAAT-TAGTGGCG-TTTACGAGAAAACGTC-GCAAAA-TCATACTATTAGCAGCGCTT
* * *
8311312 TCTTAGAAGTGCCGCAATATATATTAACGGAAACGCTGCGTTTAAA
185 TCTTAGAAGCGCCGCAAGATATATTAACCGAAACGCTGCGTTTAAA
* * * * * *
8311358 TCTTGATGTATACTGGAGTTAGTGGCGTTCACGAGAAATCACCGCTAAATCATATTATTAGCGGC
1 TCTTGATGTATAATAGAATTACTGGCGTTCACAAGAAATCACCGCTAAATCATAGTATTAGCGGC
** * * * * *
8311423 GCTTGCTAAGAAGCGCCGCAAGATATATTAACCTAAACGCTGCGTTTAGATCTTGACGTATACTG
66 GCTTGCTAAGAAGCGCCGCAAGATATAGCAACCAAAACGCTGAGCTTAGATATTGACGTATACTA
* * * *
8311488 GAATTAGTGGCGTTTACGAGAAATCGTCGCTAAATCATATTATTGGCAGCGCTTTCTTAGAAGCG
131 GAATTAGTGGCGTTTACGAGAAAACGTCGCAAAATCATACTATTAGCAGCGCTTTCTTAGAAGCG
*
8311553 CCGCAAGATATATTAACCGAAATGCTGCGTTTAAA
196 CCGCAAGATATATTAACCGAAACGCTGCGTTTAAA
* * * * * * *
8311588 TCTTGATGTATACTGGAATTAGTGGCGTTCACGAGAAATCGCTGCTAAATCATATTATTAGCGGC
1 TCTTGATGTATAATAGAATTACTGGCGTTCACAAGAAATCACCGCTAAATCATAGTATTAGCGGC
8311653 GCTT
66 GCTT
8311657 ATTTGTTAGC
Statistics
Matches: 255, Mismatches: 31, Indels: 24
0.82 0.10 0.08
Matches are distributed among these distances:
227 4 0.02
228 81 0.32
229 30 0.12
230 139 0.55
231 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (230 bp):
TCTTGATGTATAATAGAATTACTGGCGTTCACAAGAAATCACCGCTAAATCATAGTATTAGCGGC
GCTTGCTAAGAAGCGCCGCAAGATATAGCAACCAAAACGCTGAGCTTAGATATTGACGTATACTA
GAATTAGTGGCGTTTACGAGAAAACGTCGCAAAATCATACTATTAGCAGCGCTTTCTTAGAAGCG
CCGCAAGATATATTAACCGAAACGCTGCGTTTAAA
Found at i:8311424 original size:115 final size:115
Alignment explanation
Indices: 8311298--8311656 Score: 574
Period size: 115 Copynumber: 3.1 Consensus size: 115
8311288 AAAAGTATAC
* * *
8311298 TATTAGCGGCGCTTTCTTAGAAGTGCCGCAATATATATTAACGGAAACGCTGCGTTTAAATCTTG
1 TATTAGCGGCGCTTTCTTAGAAGCGCCGCAAGATATATTAACCGAAACGCTGCGTTTAAATCTTG
* *
8311363 ATGTATACTGGAGTTAGTGGCGTTCACGAGAAATCACCGCTAAATCATAT
66 ATGTATACTGGAATTAGTGGCGTTCACGAGAAATCGCCGCTAAATCATAT
* * * *
8311413 TATTAGCGGCGCTTGCTAAGAAGCGCCGCAAGATATATTAACCTAAACGCTGCGTTTAGATCTTG
1 TATTAGCGGCGCTTTCTTAGAAGCGCCGCAAGATATATTAACCGAAACGCTGCGTTTAAATCTTG
* * *
8311478 ACGTATACTGGAATTAGTGGCGTTTACGAGAAATCGTCGCTAAATCATAT
66 ATGTATACTGGAATTAGTGGCGTTCACGAGAAATCGCCGCTAAATCATAT
* * *
8311528 TATTGGCAGCGCTTTCTTAGAAGCGCCGCAAGATATATTAACCGAAATGCTGCGTTTAAATCTTG
1 TATTAGCGGCGCTTTCTTAGAAGCGCCGCAAGATATATTAACCGAAACGCTGCGTTTAAATCTTG
*
8311593 ATGTATACTGGAATTAGTGGCGTTCACGAGAAATCGCTGCTAAATCATAT
66 ATGTATACTGGAATTAGTGGCGTTCACGAGAAATCGCCGCTAAATCATAT
8311643 TATTAGCGGCGCTT
1 TATTAGCGGCGCTT
8311657 ATTTGTTAGC
Statistics
Matches: 219, Mismatches: 25, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
115 219 1.00
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30
Consensus pattern (115 bp):
TATTAGCGGCGCTTTCTTAGAAGCGCCGCAAGATATATTAACCGAAACGCTGCGTTTAAATCTTG
ATGTATACTGGAATTAGTGGCGTTCACGAGAAATCGCCGCTAAATCATAT
Found at i:8312048 original size:22 final size:21
Alignment explanation
Indices: 8312023--8312073 Score: 66
Period size: 22 Copynumber: 2.4 Consensus size: 21
8312013 ATGGTGTTTT
8312023 GGGTTTAGGGTTTAGGAGTCTG
1 GGGTTTAGGGTTTAGG-GTCTG
* * *
8312045 GGGTGTAAGGTTTAGGGTTTG
1 GGGTTTAGGGTTTAGGGTCTG
8312066 GGGTTTAG
1 GGGTTTAG
8312074 ACTACTTAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 10 0.42
22 14 0.58
ACGTcount: A:0.14, C:0.02, G:0.47, T:0.37
Consensus pattern (21 bp):
GGGTTTAGGGTTTAGGGTCTG
Found at i:8313308 original size:45 final size:45
Alignment explanation
Indices: 8313248--8313338 Score: 146
Period size: 45 Copynumber: 2.0 Consensus size: 45
8313238 TGTTGCGTCC
* *
8313248 TTCTTGCCCAATTTCTTGAATTCCCAAATCCGTAAATCGCCTCCT
1 TTCTTGCCCAATTTCTTGAAATCCCAAATCCCTAAATCGCCTCCT
* *
8313293 TTCTTGCCTAATTTCTTGAAATCCGAAATCCCTAAATCGCCTCCT
1 TTCTTGCCCAATTTCTTGAAATCCCAAATCCCTAAATCGCCTCCT
8313338 T
1 T
8313339 CCTCTTTCCA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.23, C:0.32, G:0.09, T:0.36
Consensus pattern (45 bp):
TTCTTGCCCAATTTCTTGAAATCCCAAATCCCTAAATCGCCTCCT
Found at i:8313866 original size:37 final size:37
Alignment explanation
Indices: 8313816--8313900 Score: 143
Period size: 37 Copynumber: 2.3 Consensus size: 37
8313806 CTGTCAATGG
* *
8313816 GTTACTGTTTTCCTGCATTTTTTTGGCATACTGGTCT
1 GTTACTGTTTTCCTACATTTTTTAGGCATACTGGTCT
8313853 GTTACTGTTTTCCTACATTTTTTAGGCATACTGGTCT
1 GTTACTGTTTTCCTACATTTTTTAGGCATACTGGTCT
*
8313890 GTTGCTGTTTT
1 GTTACTGTTTT
8313901 GTAGAAATCT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 45 1.00
ACGTcount: A:0.12, C:0.18, G:0.19, T:0.52
Consensus pattern (37 bp):
GTTACTGTTTTCCTACATTTTTTAGGCATACTGGTCT
Found at i:8313999 original size:23 final size:23
Alignment explanation
Indices: 8313972--8314030 Score: 118
Period size: 23 Copynumber: 2.6 Consensus size: 23
8313962 ATTTTATACA
8313972 TTAAAGTATGCAAAAACATGTAC
1 TTAAAGTATGCAAAAACATGTAC
8313995 TTAAAGTATGCAAAAACATGTAC
1 TTAAAGTATGCAAAAACATGTAC
8314018 TTAAAGTATGCAA
1 TTAAAGTATGCAA
8314031 CAGAGCCTGG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.47, C:0.12, G:0.14, T:0.27
Consensus pattern (23 bp):
TTAAAGTATGCAAAAACATGTAC
Found at i:8315121 original size:15 final size:15
Alignment explanation
Indices: 8315101--8315135 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
8315091 ATTTACCTAA
8315101 TTAAATAAATTGTAT
1 TTAAATAAATTGTAT
8315116 TTAAATAAATTGTAT
1 TTAAATAAATTGTAT
8315131 TTAAA
1 TTAAA
8315136 GTTTTATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.46
Consensus pattern (15 bp):
TTAAATAAATTGTAT
Found at i:8315264 original size:9 final size:9
Alignment explanation
Indices: 8315215--8315295 Score: 76
Period size: 9 Copynumber: 9.0 Consensus size: 9
8315205 GTTCAAATTT
*
8315215 CATATCTTA
1 CATAACTTA
* *
8315224 CGTAATTTA
1 CATAACTTA
*
8315233 CATATCTTA
1 CATAACTTA
8315242 CATAA-TT-
1 CATAACTTA
8315249 CATAACTTA
1 CATAACTTA
*
8315258 CACAACTTA
1 CATAACTTA
*
8315267 AATTTAACTTA
1 CA--TAACTTA
8315278 CATAACTTA
1 CATAACTTA
8315287 CATAACTTA
1 CATAACTTA
8315296 TTAATATTTA
Statistics
Matches: 57, Mismatches: 11, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
7 5 0.09
8 4 0.07
9 41 0.72
11 7 0.12
ACGTcount: A:0.41, C:0.20, G:0.01, T:0.38
Consensus pattern (9 bp):
CATAACTTA
Found at i:8315335 original size:19 final size:19
Alignment explanation
Indices: 8315313--8315350 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
8315303 TTATATATAG
8315313 TTTATATATATATTTAAAA
1 TTTATATATATATTTAAAA
*
8315332 TTTATATATATTTTTAAAA
1 TTTATATATATATTTAAAA
8315351 ATTGATACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
TTTATATATATATTTAAAA
Found at i:8315405 original size:23 final size:22
Alignment explanation
Indices: 8315355--8315555 Score: 65
Period size: 22 Copynumber: 9.3 Consensus size: 22
8315345 TTAAAAATTG
8315355 ATACATTACATAACTTACATAAC
1 ATACA-TACATAACTTACATAAC
*
8315378 CTACATACATAAGCTTACAT---
1 ATACATACATAA-CTTACATAAC
*
8315398 ATA-ATACATAACTTATATAAC
1 ATACATACATAACTTACATAAC
* * * *
8315419 TTAAATTTAGCA-ATCATATCATAAC
1 ATACA--TA-CATAACTTA-CATAAC
* *
8315444 TTACATACATAA-TTAGCA-ATC
1 ATACATACATAACTTA-CATAAC
*
8315465 AT--AT-CACAACTTACATAACC
1 ATACATACATAACTTACATAA-C
*
8315485 A-ACATA-ATGACTTACATAATAAC
1 ATACATACATAACTTAC---ATAAC
* *
8315508 CTACATA-ATAACTTACATAATA
1 ATACATACATAACTTACATAA-C
8315530 ATACATA-ATAA--TACATAAC
1 ATACATACATAACTTACATAAC
*
8315549 ATCCATA
1 ATACATA
8315556 AATTAAATAA
Statistics
Matches: 134, Mismatches: 23, Indels: 46
0.66 0.11 0.23
Matches are distributed among these distances:
18 12 0.09
19 20 0.15
20 11 0.08
21 18 0.13
22 24 0.18
23 15 0.11
24 23 0.17
25 11 0.08
ACGTcount: A:0.48, C:0.20, G:0.02, T:0.30
Consensus pattern (22 bp):
ATACATACATAACTTACATAAC
Found at i:8315463 original size:31 final size:32
Alignment explanation
Indices: 8315372--8315481 Score: 109
Period size: 31 Copynumber: 3.4 Consensus size: 32
8315362 ACATAACTTA
* *
8315372 CATAACCTACATACATAAGCTTA-CATATAATA-
1 CATAACTTACATACATAA-CTTAGCA-ATCATAT
* * *
8315404 CATAACTTATATAACTTAAATTTAGCAATCATAT
1 CATAACTTACAT-ACAT-AACTTAGCAATCATAT
8315438 CATAACTTACATACATAA-TTAGCAATCATAT
1 CATAACTTACATACATAACTTAGCAATCATAT
*
8315469 CACAACTTACATA
1 CATAACTTACATA
8315482 ACCAACATAA
Statistics
Matches: 66, Mismatches: 8, Indels: 9
0.80 0.10 0.11
Matches are distributed among these distances:
31 25 0.38
32 12 0.18
33 14 0.21
34 15 0.23
ACGTcount: A:0.45, C:0.20, G:0.03, T:0.32
Consensus pattern (32 bp):
CATAACTTACATACATAACTTAGCAATCATAT
Found at i:8315499 original size:21 final size:21
Alignment explanation
Indices: 8315472--8315548 Score: 68
Period size: 24 Copynumber: 3.6 Consensus size: 21
8315462 ATCATATCAC
8315472 AACTTACATAACCAACATAAT
1 AACTTACATAACCAACATAAT
* *
8315493 GACTTACATAATAACCTACATAAT
1 AACTTAC---ATAACCAACATAAT
**
8315517 AACTTACATAATAATACATAAT
1 AACTTACATAACCA-ACATAAT
8315539 AA--TACATAAC
1 AACTTACATAAC
8315549 ATCCATAAAT
Statistics
Matches: 45, Mismatches: 7, Indels: 9
0.74 0.11 0.15
Matches are distributed among these distances:
20 7 0.16
21 10 0.22
22 9 0.20
24 19 0.42
ACGTcount: A:0.52, C:0.19, G:0.01, T:0.27
Consensus pattern (21 bp):
AACTTACATAACCAACATAAT
Found at i:8315503 original size:12 final size:12
Alignment explanation
Indices: 8315486--8315647 Score: 79
Period size: 12 Copynumber: 13.8 Consensus size: 12
8315476 TACATAACCA
*
8315486 ACATAATGACTT
1 ACATAATAACTT
*
8315498 ACATAATAACCT
1 ACATAATAACTT
8315510 ACATAATAACTT
1 ACATAATAACTT
8315522 ACATAATAA--T
1 ACATAATAACTT
8315532 ACATAATAA--T
1 ACATAATAACTT
* * *
8315542 ACATAACATCCAT
1 ACATAATA-ACTT
* *
8315555 AAATTAAATAAGTT
1 ACA-T-AATAACTT
**
8315569 ACATAATACACAA
1 ACATAATA-ACTT
* * *
8315582 AAACAAAAACTT
1 ACATAATAACTT
8315594 AC---ATAACTT
1 ACATAATAACTT
* *
8315603 ACATAATATCCT
1 ACATAATAACTT
**
8315615 ACATCCCT-ACTT
1 ACAT-AATAACTT
8315627 ACATAATAACTT
1 ACATAATAACTT
8315639 ACATAATAA
1 ACATAATAA
8315648 TACATACTCT
Statistics
Matches: 110, Mismatches: 29, Indels: 22
0.68 0.18 0.14
Matches are distributed among these distances:
9 8 0.07
10 18 0.16
11 1 0.01
12 65 0.59
13 11 0.10
14 4 0.04
15 3 0.03
ACGTcount: A:0.51, C:0.19, G:0.01, T:0.28
Consensus pattern (12 bp):
ACATAATAACTT
Found at i:8315513 original size:24 final size:24
Alignment explanation
Indices: 8315479--8315547 Score: 92
Period size: 24 Copynumber: 3.0 Consensus size: 24
8315469 CACAACTTAC
* *
8315479 ATAACCAACATAATGACTTACATA
1 ATAACCTACATAATAACTTACATA
8315503 ATAACCTACATAATAACTTACATA
1 ATAACCTACATAATAACTTACATA
8315527 ATAA--TACATAATAA--TACATA
1 ATAACCTACATAATAACTTACATA
8315547 A
1 A
8315548 CATCCATAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
20 7 0.16
22 10 0.23
24 26 0.60
ACGTcount: A:0.54, C:0.17, G:0.01, T:0.28
Consensus pattern (24 bp):
ATAACCTACATAATAACTTACATA
Found at i:8315662 original size:19 final size:19
Alignment explanation
Indices: 8315632--8315682 Score: 86
Period size: 19 Copynumber: 2.7 Consensus size: 19
8315622 TACTTACATA
8315632 ATAACTTACATAATAATAC
1 ATAACTTACATAATAATAC
8315651 AT-ACTCTACATAATAATAC
1 ATAACT-TACATAATAATAC
8315670 ATAACTTACATAA
1 ATAACTTACATAA
8315683 GACATAACGT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
18 3 0.10
19 24 0.80
20 3 0.10
ACGTcount: A:0.51, C:0.18, G:0.00, T:0.31
Consensus pattern (19 bp):
ATAACTTACATAATAATAC
Found at i:8315679 original size:9 final size:9
Alignment explanation
Indices: 8315632--8315761 Score: 71
Period size: 9 Copynumber: 14.9 Consensus size: 9
8315622 TACTTACATA
8315632 ATAACTTAC
1 ATAACTTAC
8315641 ATAA-TAATAC
1 ATAACT--TAC
8315651 AT-ACTCTAC
1 ATAACT-TAC
8315660 ATAA-TAATAC
1 ATAACT--TAC
8315670 ATAACTTAC
1 ATAACTTAC
*
8315679 ATAA--GAC
1 ATAACTTAC
*
8315686 ATAACGTAC
1 ATAACTTAC
* *
8315695 ATAAGTTTC
1 ATAACTTAC
8315704 ATAA--TAC
1 ATAACTTAC
**
8315711 GCAACTTAC
1 ATAACTTAC
*
8315720 ACAACTTAC
1 ATAACTTAC
*
8315729 ACAACTTAC
1 ATAACTTAC
*
8315738 ATAACTTAT
1 ATAACTTAC
8315747 ATAA--TAC
1 ATAACTTAC
8315754 ATAACTTA
1 ATAACTTA
8315762 TTCCTAAATT
Statistics
Matches: 95, Mismatches: 14, Indels: 24
0.71 0.11 0.18
Matches are distributed among these distances:
7 16 0.17
8 1 0.01
9 63 0.66
10 14 0.15
11 1 0.01
ACGTcount: A:0.47, C:0.20, G:0.03, T:0.30
Consensus pattern (9 bp):
ATAACTTAC
Found at i:8315682 original size:16 final size:17
Alignment explanation
Indices: 8315632--8315761 Score: 81
Period size: 16 Copynumber: 7.5 Consensus size: 17
8315622 TACTTACATA
8315632 ATAACTTACATAATAATAC
1 ATAACTTACATAAT--TAC
8315651 AT-ACTCTACATAATAATAC
1 ATAACT-TACATAAT--TAC
*
8315670 ATAACTTACATAA-GAC
1 ATAACTTACATAATTAC
* *
8315686 ATAACGTACATAAGTTTC
1 ATAACTTACATAA-TTAC
**
8315704 ATAA--TACGCAACTTAC
1 ATAACTTACATAA-TTAC
* *
8315720 ACAACTTACACAACTTAC
1 ATAACTTACATAA-TTAC
*
8315738 ATAACTTATATAA-TAC
1 ATAACTTACATAATTAC
8315754 ATAACTTA
1 ATAACTTA
8315762 TTCCTAAATT
Statistics
Matches: 92, Mismatches: 13, Indels: 15
0.77 0.11 0.12
Matches are distributed among these distances:
16 36 0.39
18 29 0.32
19 24 0.26
20 3 0.03
ACGTcount: A:0.47, C:0.20, G:0.03, T:0.30
Consensus pattern (17 bp):
ATAACTTACATAATTAC
Found at i:8321229 original size:21 final size:21
Alignment explanation
Indices: 8321203--8321277 Score: 78
Period size: 21 Copynumber: 3.4 Consensus size: 21
8321193 CAACAACTTA
* *
8321203 AAGCAGATGCGGCAGCGAGAG
1 AAGCAGAGGCCGCAGCGAGAG
8321224 AAGCAGAGGCCGCAGCGAGAG
1 AAGCAGAGGCCGCAGCGAGAG
** *
8321245 AAGCAGCGAGAGAAGCAGCGATAG
1 AAGCA--GAG-GCCGCAGCGAGAG
8321269 AAGCAGAGG
1 AAGCAGAGG
8321278 TTCAAAAGAA
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
21 25 0.54
22 3 0.07
23 3 0.07
24 15 0.33
ACGTcount: A:0.37, C:0.19, G:0.41, T:0.03
Consensus pattern (21 bp):
AAGCAGAGGCCGCAGCGAGAG
Found at i:8321252 original size:12 final size:12
Alignment explanation
Indices: 8321214--8321274 Score: 74
Period size: 12 Copynumber: 5.3 Consensus size: 12
8321204 AGCAGATGCG
8321214 GCAGCGAGAGAA
1 GCAGCGAGAGAA
**
8321226 GCA--GAG-GCC
1 GCAGCGAGAGAA
8321235 GCAGCGAGAGAA
1 GCAGCGAGAGAA
8321247 GCAGCGAGAGAA
1 GCAGCGAGAGAA
*
8321259 GCAGCGATAGAA
1 GCAGCGAGAGAA
8321271 GCAG
1 GCAG
8321275 AGGTTCAAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
9 4 0.10
10 3 0.07
11 3 0.07
12 31 0.76
ACGTcount: A:0.38, C:0.20, G:0.41, T:0.02
Consensus pattern (12 bp):
GCAGCGAGAGAA
Found at i:8321729 original size:43 final size:42
Alignment explanation
Indices: 8321682--8321773 Score: 114
Period size: 42 Copynumber: 2.2 Consensus size: 42
8321672 ATCAAACAGT
* *
8321682 GGCGTTTGTGAAATAAGAGCCGCTAAAGAACA-CTACTTTTAGC
1 GGCGTTTGTG-AACAAGAGCCGCTAAAGAACATC-ACTTTTAGA
* * *
8321725 GGCGTTTTTGAACAAGCGCCGCTATAGAACATCACTTTTAGA
1 GGCGTTTGTGAACAAGAGCCGCTAAAGAACATCACTTTTAGA
8321767 GGCGTTT
1 GGCGTTT
8321774 TCTTCCAAAG
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
42 33 0.77
43 10 0.23
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (42 bp):
GGCGTTTGTGAACAAGAGCCGCTAAAGAACATCACTTTTAGA
Found at i:8321870 original size:85 final size:84
Alignment explanation
Indices: 8321739--8321978 Score: 329
Period size: 85 Copynumber: 2.8 Consensus size: 84
8321729 TTTTTGAACA
* * * *
8321739 AGCGCCGCTATAGAACATCA-CTTTTAGAGGCGTTTTCTTCCAAAGCGCCGCTAAAGAACATGAT
1 AGCGCCGCTAAAGAACATGATC-TTTAGCGGCGTTTT-TT-CTAAGCGCCGCTAAAGAACATGAT
8321803 CTTTAGCGGCGTTTATTTCCTT
63 CTTTAGCGGCGTTTATTTCCTT
* *
8321825 AGTGCCGCTAAAGAACATGATCTTTAGCGGCGTTTATTTCTAAGCGCCGCTAAAGAACATGGTCT
1 AGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTT-TTTCTAAGCGCCGCTAAAGAACATGATCT
* **
8321890 TTAGTGGCGTTTATTTTTTT
65 TTAGCGGCGTTTATTTCCTT
* *
8321910 AGCGCCACTAAAGAACATGATCTTTAGCGGTGTTTTTTTCTAAGCGCCGCTAAAGAACATGATCT
1 AGCGCCGCTAAAGAACATGATCTTTAGCGGCG-TTTTTTCTAAGCGCCGCTAAAGAACATGATCT
8321975 TTAG
65 TTAG
8321979 AGGCCTTTTT
Statistics
Matches: 138, Mismatches: 13, Indels: 7
0.87 0.08 0.04
Matches are distributed among these distances:
85 102 0.74
86 34 0.25
87 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33
Consensus pattern (84 bp):
AGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCTAAGCGCCGCTAAAGAACATGATCTT
TAGCGGCGTTTATTTCCTT
Found at i:8321891 original size:42 final size:42
Alignment explanation
Indices: 8321695--8322008 Score: 316
Period size: 43 Copynumber: 7.4 Consensus size: 42
8321685 GTTTGTGAAA
* *
8321695 TAAGAGCCGCTAAAGAACACT-A-CTTTTAGCGGCGTTT-TTGAAC
1 TAAGCGCCGCTAAAGAACA-TGATC-TTTAGCGGCGTTTATT--TC
* * *
8321738 -AAGCGCCGCTATAGAACATCA-CTTTTAGAGGCGTTT-TCTTCC
1 TAAGCGCCGCTAAAGAACATGATC-TTTAGCGGCGTTTAT-TT-C
*
8321780 AAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTATTTCC
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTATTT-C
* *
8321823 TTAGTGCCGCTAAAGAACATGATCTTTAGCGGCGTTTATTTC
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTATTTC
* * *
8321865 TAAGCGCCGCTAAAGAACATGGTCTTTAGTGGCGTTTATTTTT
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTA-TTTC
* * * *
8321908 TTAGCGCCACTAAAGAACATGATCTTTAGCGGTGTTTTTTTC
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTATTTC
* * *
8321950 TAAGCGCCGCTAAAGAACATGATCTTTAGAGGCCTTTTTTTC
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTATTTC
*
8321992 TGTAAGCGCCGCAAAAG
1 --TAAGCGCCGCTAAAG
8322009 TTTGCGACGT
Statistics
Matches: 234, Mismatches: 28, Indels: 17
0.84 0.10 0.06
Matches are distributed among these distances:
41 1 0.00
42 108 0.46
43 109 0.47
44 16 0.07
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (42 bp):
TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTATTTC
Found at i:8326484 original size:3 final size:3
Alignment explanation
Indices: 8326476--8326518 Score: 59
Period size: 3 Copynumber: 14.3 Consensus size: 3
8326466 GAGTACCAAT
* * *
8326476 TCA TCA TCA TCA ACA TTA TCA TCA TCT TCA TCA TCA TCA TCA T
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA T
8326519 TAAGGACATC
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.33, C:0.30, G:0.00, T:0.37
Consensus pattern (3 bp):
TCA
Found at i:8331232 original size:43 final size:42
Alignment explanation
Indices: 8331165--8331334 Score: 186
Period size: 43 Copynumber: 4.0 Consensus size: 42
8331155 ATAGGATTTC
* *
8331165 CGATATGTG-TTATCGTGTACGACCACGTCTGGGACGTTGGCAT
1 CGAT-TGTGATTA-CGTGTAAGACCACGTCTGGGACATTGGCAT
* *
8331208 CGACTTGTGTTTACGTGTAAGACCATGTCTGGGACATTGGCAT
1 CGA-TTGTGATTACGTGTAAGACCACGTCTGGGACATTGGCAT
* *
8331251 CGTATT-TGATT-CGTGTAAGACTC-TGTCTGGGACAATGGCAT
1 CG-ATTGTGATTACGTGTAAGAC-CACGTCTGGGACATTGGCAT
* *
8331292 CGATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
1 CGAT-TGTGATTACGTGTAAGACCACGTCTGGGACATTGGCAT
8331335 TGTACGAGTC
Statistics
Matches: 110, Mismatches: 9, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
40 2 0.02
41 30 0.27
42 11 0.10
43 62 0.56
44 5 0.05
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (42 bp):
CGATTGTGATTACGTGTAAGACCACGTCTGGGACATTGGCAT
Found at i:8331524 original size:16 final size:17
Alignment explanation
Indices: 8331495--8331526 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
8331485 TGAATTGATG
8331495 ATATGAAGTTATGTGAA
1 ATATGAAGTTATGTGAA
8331512 ATATGAA-TTATGTGA
1 ATATGAAGTTATGTGA
8331527 TTGCATATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.41, C:0.00, G:0.22, T:0.38
Consensus pattern (17 bp):
ATATGAAGTTATGTGAA
Found at i:8340894 original size:14 final size:12
Alignment explanation
Indices: 8340863--8340891 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
8340853 TTGTTTCTTT
8340863 TATATGTACATG
1 TATATGTACATG
8340875 TATATGTACATG
1 TATATGTACATG
8340887 TATAT
1 TATAT
8340892 ATGACTGTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.34, C:0.07, G:0.14, T:0.45
Consensus pattern (12 bp):
TATATGTACATG
Found at i:8348971 original size:6 final size:6
Alignment explanation
Indices: 8348960--8348991 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
8348950 TCTAAATTCA
8348960 CATTGC CATTGC CATTGC CATTGC CATTGC CA
1 CATTGC CATTGC CATTGC CATTGC CATTGC CA
8348992 AATACATATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.19, C:0.34, G:0.16, T:0.31
Consensus pattern (6 bp):
CATTGC
Found at i:8354512 original size:29 final size:28
Alignment explanation
Indices: 8354439--8354513 Score: 69
Period size: 29 Copynumber: 2.5 Consensus size: 28
8354429 AACGACTCAG
*
8354439 TAACTAAAATGTTACAACATATTAACGTAAA
1 TAACTAAAATG-T--AACATATTAACATAAA
* * * *
8354470 TGACTAAGACGTAACATTTTAAACATAAA
1 TAACTAAAATGTAACATATT-AACATAAA
8354499 TAACTAAAATGTAAC
1 TAACTAAAATGTAAC
8354514 CTTAAAAAAA
Statistics
Matches: 35, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
28 7 0.20
29 19 0.54
30 1 0.03
31 8 0.23
ACGTcount: A:0.51, C:0.13, G:0.08, T:0.28
Consensus pattern (28 bp):
TAACTAAAATGTAACATATTAACATAAA
Found at i:8355145 original size:123 final size:125
Alignment explanation
Indices: 8354831--8355181 Score: 564
Period size: 126 Copynumber: 2.8 Consensus size: 125
8354821 TAATTTTGAG
**
8354831 TTGACGTTTCTGATAAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
1 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
*
8354896 AAATCGCGCCCTTGTGGACGCGCTTTTGCTACAGTAGGTCACGGAAGAAATAATTATTTTT
66 AAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCACGGAAGAAATAA-TATTTTT
*
8354957 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGTAGGATGCTATTTGAGAAGAATTTGTG
1 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
* * * *
8355022 AAATCGCGGCCTCGT-CAGCGCGCTTTTGCTACAGTAGGTCATGTAAGAAAT-A-ATTTTT
66 AAATCGCGCCCTCGTGGA-CGCGCTTTTGCTACAGTAGGTCACGGAAGAAATAATATTTTT
* * *
8355080 TTGACGTTTCTGAGCAAATAATATAAAATTGCTTCTAACAGGATGCTATTTGAGAAGAATTTGTG
1 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
8355145 AAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAG
66 AAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAG
8355182 CATGTTTGGG
Statistics
Matches: 209, Mismatches: 14, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
123 100 0.48
124 1 0.00
125 2 0.01
126 106 0.51
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.33
Consensus pattern (125 bp):
TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
AAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCACGGAAGAAATAATATTTTT
Found at i:8358539 original size:116 final size:116
Alignment explanation
Indices: 8358210--8358542 Score: 623
Period size: 115 Copynumber: 2.9 Consensus size: 116
8358200 TGATAAATTG
8358210 TATTAAGTCAAAAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAAATTATTAATTGT
1 TATTAAGTCAAAAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAAATTATTAATTGT
8358275 TAGTACCAGTCAAAACATTTTTCCAAATCTAACATTATGTGAATGTAAAAT
66 TAGTACCAGTCAAAACATTTTTCCAAATCTAACATTATGTGAATGTAAAAT
*
8358326 TATTAAGTC-AAAAATAGTATTAATGGTTAGTAAAATTATCAAATTATATAAAATTATTAATTGT
1 TATTAAGTCAAAAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAAATTATTAATTGT
8358390 TAGTACCAGTCAAAACATTTTTCCAAATCTAACATTATGTGAATGTAAAAT
66 TAGTACCAGTCAAAACATTTTTCCAAATCTAACATTATGTGAATGTAAAAT
* *
8358441 TATTAAGTCAAAAAATTGTATTAATGGTTAGTAAAATTATCAAATTATGTAAAATTATTATTTGT
1 TATTAAGTCAAAAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAAATTATTAATTGT
*
8358506 TAGTACTAGTCAAAACATTTTTCCAAATCTAACATTA
66 TAGTACCAGTCAAAACATTTTTCCAAATCTAACATTA
8358543 CGTTAAGGTT
Statistics
Matches: 211, Mismatches: 5, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
115 114 0.54
116 97 0.46
ACGTcount: A:0.44, C:0.09, G:0.09, T:0.38
Consensus pattern (116 bp):
TATTAAGTCAAAAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAAATTATTAATTGT
TAGTACCAGTCAAAACATTTTTCCAAATCTAACATTATGTGAATGTAAAAT
Found at i:8358649 original size:29 final size:24
Alignment explanation
Indices: 8358573--8358795 Score: 203
Period size: 23 Copynumber: 9.0 Consensus size: 24
8358563 AGTTAAGGGT
8358573 TTAGGGTTTTTAATT-AAATTAGG
1 TTAGGGTTTTTAATTAAAATTAGG
8358596 TTAGGGTTTTTAATT-AAATTAGG
1 TTAGGGTTTTTAATTAAAATTAGG
8358619 TTAGGGTTTTTAATTAAATTAGGTTAAGG
1 TTAGGGTTTTTAATTAAA--A--TT-AGG
*
8358648 TTAGGGTTTTTAAGTT--AA--GGG
1 TTAGGGTTTTTAA-TTAAAATTAGG
8358669 TTTAGGGTTTTTAATTAAATTAGGTTAGAG
1 -TTAGGGTTTTTAATTAAA--A--TTAG-G
8358699 TTAGGGTTTTTAATT-AAATTAGG
1 TTAGGGTTTTTAATTAAAATTAGG
* *
8358722 TTAGGGTTTTTAATTTTAAGTTAATGG
1 TTAGGGTTTTTAA-TTAAAATT-A-GG
8358749 TTTAGGGTTTTTAATT-AAATTAGG
1 -TTAGGGTTTTTAATTAAAATTAGG
*
8358773 TTAAGGTTTTTAATT-AAATTAGG
1 TTAGGGTTTTTAATTAAAATTAGG
8358796 CTAAGGTTAG
Statistics
Matches: 173, Mismatches: 5, Indels: 44
0.78 0.02 0.20
Matches are distributed among these distances:
21 4 0.02
22 13 0.08
23 75 0.43
24 10 0.06
25 6 0.03
26 8 0.05
27 4 0.02
28 18 0.10
29 32 0.18
30 3 0.02
ACGTcount: A:0.30, C:0.00, G:0.23, T:0.48
Consensus pattern (24 bp):
TTAGGGTTTTTAATTAAAATTAGG
Found at i:8358679 original size:51 final size:50
Alignment explanation
Indices: 8358539--8358863 Score: 325
Period size: 51 Copynumber: 6.5 Consensus size: 50
8358529 CAAATCTAAC
* **
8358539 ATTACGTTAAGGTTAGAATTTTTAAGTTAAGGGTTTAGGGTTTTTAATTAA
1 ATTAGGTTAAGGTTAGGGTTTTTAAGTTAAGGG-TTAGGGTTTTTAATTAA
* *
8358590 ATTAGGTTAGGGTT----TTTAATTAAATT-A-GGTTAGGGTTTTTAATTAA
1 ATTAGGTTAAGGTTAGGGTTT--TTAAGTTAAGGGTTAGGGTTTTTAATTAA
8358636 ATTAGGTTAAGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAATTAA
1 ATTAGGTTAAGGTTAGGGTTTTTAAGTTAAGGG-TTAGGGTTTTTAATTAA
*
8358687 ATTAGGTT-AGAGTTAGGGTTTTTAA-TTAAATTAGGTTAGGGTTTTTAATT--
1 ATTAGGTTAAG-GTTAGGGTTTTTAAGTT-AA--GGGTTAGGGTTTTTAATTAA
* * *
8358737 -TTAAGTTAATGGTTTAGGGTTTTTAA-TTAAATTAGGTTAAGGTTTTTAATTAA
1 ATTAGGTTAA-GG-TTAGGGTTTTTAAGTT-AA--GGGTTAGGGTTTTTAATTAA
* *
8358790 ATTAGGCTAAGGTTAGCGTTTTTAAGTTAAGGGTTTAGGGTTTTTAATTAA
1 ATTAGGTTAAGGTTAGGGTTTTTAAGTTAAGGG-TTAGGGTTTTTAATTAA
*
8358841 ATTAGGTT-AGGGTAGGGTTTTTA
1 ATTAGGTTAAGGTTAGGGTTTTTA
8358864 CTATCACAAG
Statistics
Matches: 237, Mismatches: 16, Indels: 43
0.80 0.05 0.15
Matches are distributed among these distances:
46 30 0.13
47 5 0.02
48 7 0.03
49 13 0.05
50 26 0.11
51 114 0.48
52 29 0.12
53 6 0.03
54 7 0.03
ACGTcount: A:0.29, C:0.01, G:0.24, T:0.46
Consensus pattern (50 bp):
ATTAGGTTAAGGTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTAA
Found at i:8358683 original size:74 final size:74
Alignment explanation
Indices: 8358596--8358853 Score: 372
Period size: 74 Copynumber: 3.4 Consensus size: 74
8358586 TTAAATTAGG
*
8358596 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAATTAAATTAGGTTAAGGTTAGGGTTTTTAA
1 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAATTAAATTAGGTTAAGGTTAGCGTTTTTAA
8358661 GTTAAGGGT
66 GTTAAGGGT
* *****
8358670 TTAGGGTTTTTAATTAAATTAGGTTAGAGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAA
1 TTAGGGTTTTTAATT-AA--A--TTAG-GTTAGGGTTTTTAATTAAATTAGGTTAAGGTTAGCGT
*
8358735 TTTTAAGTTAATGGT
60 TTTTAAGTTAAGGGT
* *
8358750 TTAGGGTTTTTAATTAAATTAGGTTAAGGTTTTTAATTAAATTAGGCTAAGGTTAGCGTTTTTAA
1 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAATTAAATTAGGTTAAGGTTAGCGTTTTTAA
8358815 GTTAAGGGT
66 GTTAAGGGT
8358824 TTAGGGTTTTTAATTAAATTAGGTTAGGGT
1 TTAGGGTTTTTAATTAAATTAGGTTAGGGT
8358854 AGGGTTTTTA
Statistics
Matches: 161, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
74 87 0.54
75 6 0.04
77 2 0.01
79 6 0.04
80 60 0.37
ACGTcount: A:0.29, C:0.01, G:0.24, T:0.47
Consensus pattern (74 bp):
TTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAATTAAATTAGGTTAAGGTTAGCGTTTTTAA
GTTAAGGGT
Found at i:8358764 original size:154 final size:148
Alignment explanation
Indices: 8358573--8358863 Score: 483
Period size: 154 Copynumber: 1.9 Consensus size: 148
8358563 AGTTAAGGGT
*
8358573 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAATTAAAT
1 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAATTAAATTAGGTTAAGGTTTTTAATTAAAT
* * *
8358638 TAGGTTAAGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAATTAAATTAGGTTAGAGTTAG
66 TAGGCTAAGGTTAGCGTTTTTAAGTTAAGGGTTTAGGGTTTTTAATTAAATTAGGTTAG-GGTAG
8358703 GGTTTTTAATTAAATTAGG
130 GGTTTTTAATTAAATTAGG
*
8358722 TTAGGGTTTTTAATTTTAAGTTAATGGTTTAGGGTTTTTAATTAAATTAGGTTAAGGTTTTTAAT
1 TTAGGGTTTTTAA--TTAAATT-A-GG-TTAGGGTTTTTAATTAAATTAGGTTAAGGTTTTTAAT
8358787 TAAATTAGGCTAAGGTTAGCGTTTTTAAGTTAAGGGTTTAGGGTTTTTAATTAAATTAGGTTAGG
61 TAAATTAGGCTAAGGTTAGCGTTTTTAAGTTAAGGGTTTAGGGTTTTTAATTAAATTAGGTTAGG
8358852 GTAGGGTTTTTA
126 GTAGGGTTTTTA
8358864 CTATCACAAG
Statistics
Matches: 132, Mismatches: 5, Indels: 6
0.92 0.03 0.04
Matches are distributed among these distances:
149 13 0.10
151 6 0.05
152 1 0.01
153 14 0.11
154 98 0.74
ACGTcount: A:0.29, C:0.01, G:0.24, T:0.47
Consensus pattern (148 bp):
TTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAATTAAATTAGGTTAAGGTTTTTAATTAAAT
TAGGCTAAGGTTAGCGTTTTTAAGTTAAGGGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTAGG
GTTTTTAATTAAATTAGG
Found at i:8370719 original size:8 final size:8
Alignment explanation
Indices: 8370706--8370738 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
8370696 AAATAATTTT
8370706 TTATAAAA
1 TTATAAAA
8370714 TTATAAAA
1 TTATAAAA
*
8370722 -TATATAA
1 TTATAAAA
8370729 TTATAAAA
1 TTATAAAA
8370737 TT
1 TT
8370739 CTACAAAGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
7 6 0.27
8 16 0.73
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (8 bp):
TTATAAAA
Found at i:8370725 original size:15 final size:15
Alignment explanation
Indices: 8370707--8370737 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
8370697 AATAATTTTT
8370707 TATAAAATTATAAAA
1 TATAAAATTATAAAA
*
8370722 TATATAATTATAAAA
1 TATAAAATTATAAAA
8370737 T
1 T
8370738 TCTACAAAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (15 bp):
TATAAAATTATAAAA
Found at i:8371042 original size:18 final size:19
Alignment explanation
Indices: 8371010--8371047 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
8371000 ATTACAATTT
8371010 TTTAATTTTTAATTT-AAA
1 TTTAATTTTTAATTTCAAA
8371028 TTTAATATTTT-ATTTCAAA
1 TTTAAT-TTTTAATTTCAAA
8371047 T
1 T
8371048 GAACCTAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.61
Consensus pattern (19 bp):
TTTAATTTTTAATTTCAAA
Found at i:8373300 original size:14 final size:14
Alignment explanation
Indices: 8373261--8373311 Score: 52
Period size: 14 Copynumber: 3.5 Consensus size: 14
8373251 CCTCTTATAC
8373261 CTCTTTT-TTTTTT
1 CTCTTTTCTTTTTT
8373274 ACTCCTCTTTCTTTTTT
1 -CT-CT-TTTCTTTTTT
8373291 CTCTTTTCTTATTTT
1 CTCTTTTCTT-TTTT
8373306 -TCTTTT
1 CTCTTTT
8373312 TCTAAGCATG
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
14 14 0.42
15 8 0.24
16 5 0.15
17 6 0.18
ACGTcount: A:0.04, C:0.22, G:0.00, T:0.75
Consensus pattern (14 bp):
CTCTTTTCTTTTTT
Found at i:8374174 original size:17 final size:18
Alignment explanation
Indices: 8374130--8374176 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
8374120 TTATATTATA
8374130 TTATATCATATCATATAGT
1 TTATAT-ATATCATATAGT
* *
8374149 ATATAATATATTA-ATAGT
1 TTAT-ATATATCATATAGT
8374167 TTATATATAT
1 TTATATATAT
8374177 GCATTAATGA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
17 6 0.25
18 8 0.33
19 8 0.33
20 2 0.08
ACGTcount: A:0.43, C:0.04, G:0.04, T:0.49
Consensus pattern (18 bp):
TTATATATATCATATAGT
Found at i:8379176 original size:38 final size:37
Alignment explanation
Indices: 8379088--8379177 Score: 110
Period size: 37 Copynumber: 2.4 Consensus size: 37
8379078 CCCATTACCG
*
8379088 TGGTGTGTAGGGTGGACGAGCCTATAATAGCCCTTTA
1 TGGTGTGTAGGGTGGACGAGCCTACAATAGCCCTTTA
* * *
8379125 TGGTGTGTAGGGTGGATGGGCCTACCATAGCCCAATTT-
1 TGGTGTGTAGGGTGGACGAGCCTACAATAGCCC--TTTA
*
8379163 TGGTGTGAAGGGTGG
1 TGGTGTGTAGGGTGG
8379178 TCGGAATGGT
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
37 29 0.63
38 14 0.30
39 3 0.07
ACGTcount: A:0.19, C:0.14, G:0.38, T:0.29
Consensus pattern (37 bp):
TGGTGTGTAGGGTGGACGAGCCTACAATAGCCCTTTA
Found at i:8380125 original size:14 final size:13
Alignment explanation
Indices: 8380097--8380135 Score: 53
Period size: 12 Copynumber: 2.9 Consensus size: 13
8380087 GAAAAATAAA
8380097 AAATAAAAAAG-G
1 AAATAAAAAAGAG
8380109 AAATAAAATAAGAG
1 AAATAAAA-AAGAG
8380123 AAAATAAAAAAGA
1 -AAATAAAAAAGA
8380136 AATAGAAACA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 8 0.33
13 3 0.12
14 5 0.21
15 8 0.33
ACGTcount: A:0.77, C:0.00, G:0.13, T:0.10
Consensus pattern (13 bp):
AAATAAAAAAGAG
Found at i:8380443 original size:18 final size:19
Alignment explanation
Indices: 8380420--8380455 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
8380410 ATACCACTTA
*
8380420 TTATTATTTTATT-ATTGT
1 TTATTATTATATTGATTGT
8380438 TTATTATTATATTGATTG
1 TTATTATTATATTGATTG
8380456 AAATATGCTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.25, C:0.00, G:0.08, T:0.67
Consensus pattern (19 bp):
TTATTATTATATTGATTGT
Found at i:8380662 original size:28 final size:28
Alignment explanation
Indices: 8380591--8380675 Score: 73
Period size: 30 Copynumber: 2.9 Consensus size: 28
8380581 CTACATCTTT
* *
8380591 TATTATAATCTATATTA-TAATAGTTATA
1 TATTATAAT-TTTTTTAGTAATAGTTATA
* **
8380619 TATGAACTAACATTTTTAGTAATAGTTATA
1 TAT-TA-TAATTTTTTTAGTAATAGTTATA
*
8380649 TATTATAATTTTTTTAAGTATTAGTTA
1 TATTATAATTTTTTT-AGTAATAGTTA
8380676 CAATAACACA
Statistics
Matches: 44, Mismatches: 9, Indels: 7
0.73 0.15 0.12
Matches are distributed among these distances:
28 11 0.25
29 16 0.36
30 17 0.39
ACGTcount: A:0.39, C:0.04, G:0.07, T:0.51
Consensus pattern (28 bp):
TATTATAATTTTTTTAGTAATAGTTATA
Found at i:8386617 original size:5 final size:6
Alignment explanation
Indices: 8386602--8386627 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
8386592 CTATATAAGG
8386602 GGGGGT GGGGGT GGGGGT GGGGGT GG
1 GGGGGT GGGGGT GGGGGT GGGGGT GG
8386628 AGATTAAGGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.00, G:0.85, T:0.15
Consensus pattern (6 bp):
GGGGGT
Found at i:8390223 original size:13 final size:14
Alignment explanation
Indices: 8390205--8390268 Score: 60
Period size: 14 Copynumber: 4.7 Consensus size: 14
8390195 ACCTACGTGT
8390205 TTCGCACATAT-GG
1 TTCGCACATATGGG
*
8390218 TTCGCACTTA-GGG
1 TTCGCACATATGGG
* *
8390231 TTCACATATATGGG
1 TTCGCACATATGGG
* *
8390245 TTCACACCTATGGG
1 TTCGCACATATGGG
*
8390259 TTTGCACATA
1 TTCGCACATA
8390269 CAAGGGGGTT
Statistics
Matches: 40, Mismatches: 9, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
13 18 0.45
14 22 0.55
ACGTcount: A:0.23, C:0.22, G:0.22, T:0.33
Consensus pattern (14 bp):
TTCGCACATATGGG
Found at i:8390301 original size:23 final size:23
Alignment explanation
Indices: 8390274--8390383 Score: 69
Period size: 23 Copynumber: 4.7 Consensus size: 23
8390264 ACATACAAGG
8390274 GGGTTCGCATAAATACATATACA
1 GGGTTCGCATAAATACATATACA
* * * *
8390297 GGGTTCGCATAGTACACATAAATA
1 GGGTTCGCATA-AATACATATACA
* * * *
8390321 GAGTTCACGT-AATAACATGTACA
1 GGGTTCGCATAAAT-ACATATACA
* * * *
8390344 AGGTTCGCATATACACAAATATATA
1 GGGTTCGCATA-A-ATACATATACA
8390369 GGGTTCGCATAAATA
1 GGGTTCGCATAAATA
8390384 GTCATGTAGG
Statistics
Matches: 60, Mismatches: 22, Indels: 10
0.65 0.24 0.11
Matches are distributed among these distances:
22 1 0.02
23 25 0.42
24 16 0.27
25 17 0.28
26 1 0.02
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.26
Consensus pattern (23 bp):
GGGTTCGCATAAATACATATACA
Found at i:8390484 original size:45 final size:44
Alignment explanation
Indices: 8390366--8390486 Score: 113
Period size: 45 Copynumber: 2.7 Consensus size: 44
8390356 ACACAAATAT
* * *
8390366 ATAGGGTTCGCATAAATAGTCATGTAGGGTTTGCATGAATAACAC
1 ATAGAGTTCGCATAGATATTCATGTAGGG-TTGCATGAATAACAC
* * * *
8390411 ATA-AGGTTTGCATAGCA-ATACATTTAGGGTTGACATGTATAAACAC
1 ATAGA-GTTCGCATAG-ATATTCATGTAGGGTTG-CATGAAT-AACAC
8390457 ATAGAGTTCGCAT-GATATTCATGTAGGGTT
1 ATAGAGTTCGCATAGATATTCATGTAGGGTT
8390487 TGCAAAGATA
Statistics
Matches: 60, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
44 4 0.07
45 39 0.65
46 16 0.27
47 1 0.02
ACGTcount: A:0.33, C:0.12, G:0.23, T:0.31
Consensus pattern (44 bp):
ATAGAGTTCGCATAGATATTCATGTAGGGTTGCATGAATAACAC
Found at i:8390600 original size:29 final size:28
Alignment explanation
Indices: 8390530--8390600 Score: 81
Period size: 29 Copynumber: 2.5 Consensus size: 28
8390520 CCTATATGAT
*
8390530 TTTGCATAT-GGGTTCGCATACAAAAGG
1 TTTGCATATAGGGTTCGCACACAAAAGG
* * *
8390557 TTTGCCTATACGGTTCGCACACAAAGGGG
1 TTTGCATATAGGGTTCGCACACAAA-AGG
*
8390586 TTTGCATTTAGGGTT
1 TTTGCATATAGGGTT
8390601 TTCTTATAGG
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
27 8 0.23
28 13 0.37
29 14 0.40
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (28 bp):
TTTGCATATAGGGTTCGCACACAAAAGG
Found at i:8390647 original size:15 final size:15
Alignment explanation
Indices: 8390627--8390658 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
8390617 CATGGAGGAT
8390627 TTTGCACACAGGGAG
1 TTTGCACACAGGGAG
8390642 TTTGCACACAGGGAG
1 TTTGCACACAGGGAG
8390657 TT
1 TT
8390659 CGCCTATACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (15 bp):
TTTGCACACAGGGAG
Found at i:8391656 original size:14 final size:14
Alignment explanation
Indices: 8391637--8391666 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
8391627 TCAAAAAATG
8391637 TTAGTAAATTTTTT
1 TTAGTAAATTTTTT
*
8391651 TTAGTAAGTTTTTT
1 TTAGTAAATTTTTT
8391665 TT
1 TT
8391667 CAATATTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.23, C:0.00, G:0.10, T:0.67
Consensus pattern (14 bp):
TTAGTAAATTTTTT
Found at i:8392325 original size:27 final size:27
Alignment explanation
Indices: 8392295--8392346 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
8392285 GGCCAATTAC
*
8392295 ATTGGCGGCACTAAAGGTGCCAAAGAG
1 ATTGGCGGCACCAAAGGTGCCAAAGAG
*
8392322 ATTGGCGGCACCAATGGTGCCAAAG
1 ATTGGCGGCACCAAAGGTGCCAAAG
8392347 GACTAAAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.31, C:0.21, G:0.33, T:0.15
Consensus pattern (27 bp):
ATTGGCGGCACCAAAGGTGCCAAAGAG
Found at i:8392942 original size:19 final size:19
Alignment explanation
Indices: 8392918--8393013 Score: 115
Period size: 19 Copynumber: 5.2 Consensus size: 19
8392908 TCTAATTAAG
* *
8392918 TAATAACTCTGTTTTAATT
1 TAATAACTCTATTTTCATT
* *
8392937 TAATAA-ACTATTCTCATT
1 TAATAACTCTATTTTCATT
*
8392955 TAATAACTCTATTTTAATT
1 TAATAACTCTATTTTCATT
* *
8392974 TAATAA-ACTATTCTCATT
1 TAATAACTCTATTTTCATT
8392992 TAATAACTCTATTTTCATT
1 TAATAACTCTATTTTCATT
8393011 TAA
1 TAA
8393014 AATATAAAAT
Statistics
Matches: 63, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
18 29 0.46
19 34 0.54
ACGTcount: A:0.36, C:0.14, G:0.01, T:0.49
Consensus pattern (19 bp):
TAATAACTCTATTTTCATT
Found at i:8392959 original size:37 final size:37
Alignment explanation
Indices: 8392918--8393013 Score: 174
Period size: 37 Copynumber: 2.6 Consensus size: 37
8392908 TCTAATTAAG
*
8392918 TAATAACTCTGTTTTAATTTAATAAACTATTCTCATT
1 TAATAACTCTATTTTAATTTAATAAACTATTCTCATT
8392955 TAATAACTCTATTTTAATTTAATAAACTATTCTCATT
1 TAATAACTCTATTTTAATTTAATAAACTATTCTCATT
*
8392992 TAATAACTCTATTTTCATTTAA
1 TAATAACTCTATTTTAATTTAA
8393014 AATATAAAAT
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 57 1.00
ACGTcount: A:0.36, C:0.14, G:0.01, T:0.49
Consensus pattern (37 bp):
TAATAACTCTATTTTAATTTAATAAACTATTCTCATT
Found at i:8393261 original size:28 final size:27
Alignment explanation
Indices: 8393199--8393263 Score: 76
Period size: 29 Copynumber: 2.3 Consensus size: 27
8393189 TAAGGGAATA
*
8393199 TATTAAATTTATAAAATTAAAATAGTT
1 TATTAAATTTATAAAATTAAAATAGGT
* *
8393226 TAATTTAATTTTTTAAAATTAAAATAGAGT
1 T-A-TTAAATTTATAAAATTAAAATAG-GT
8393256 TATTAAAT
1 TATTAAAT
8393264 GAGAATAGTT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
27 1 0.03
28 6 0.19
29 22 0.71
30 2 0.06
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (27 bp):
TATTAAATTTATAAAATTAAAATAGGT
Found at i:8393263 original size:19 final size:19
Alignment explanation
Indices: 8393241--8393304 Score: 85
Period size: 19 Copynumber: 3.4 Consensus size: 19
8393231 TAATTTTTTA
8393241 AAATTAAAATAGAGTTATT
1 AAATTAAAATAGAGTTATT
* * *
8393260 AAATGAGAATAG-TTTATT
1 AAATTAAAATAGAGTTATT
*
8393278 ACATTAAAATAGAGTTATT
1 AAATTAAAATAGAGTTATT
8393297 AAATTAAA
1 AAATTAAA
8393305 CTATTTTAAT
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
18 14 0.39
19 22 0.61
ACGTcount: A:0.52, C:0.02, G:0.11, T:0.36
Consensus pattern (19 bp):
AAATTAAAATAGAGTTATT
Found at i:8393642 original size:27 final size:26
Alignment explanation
Indices: 8393607--8393662 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 26
8393597 GTTACATTTT
8393607 AATCCTTTGGCACCATTGGTGCCGCC
1 AATCCTTTGGCACCATTGGTGCCGCC
* *
8393633 AATCTCTTTGGCACCTTTGGTGTCGCC
1 AATC-CTTTGGCACCATTGGTGCCGCC
8393660 AAT
1 AAT
8393663 GTGATTGGGC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 4 0.15
27 23 0.85
ACGTcount: A:0.16, C:0.30, G:0.21, T:0.32
Consensus pattern (26 bp):
AATCCTTTGGCACCATTGGTGCCGCC
Found at i:8393771 original size:27 final size:28
Alignment explanation
Indices: 8393718--8393782 Score: 98
Period size: 27 Copynumber: 2.4 Consensus size: 28
8393708 ATTTTTTGAT
*
8393718 ATATTTT-AGTAAATAAAAAAAATTTATA
1 ATATTTTGA-TAAATAAAAAAAAGTTATA
8393746 ATATTTTGATAAAT-AAAAAAAGTTATA
1 ATATTTTGATAAATAAAAAAAAGTTATA
8393773 ATATTTTGAT
1 ATATTTTGAT
8393783 TATTTTTTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
27 22 0.63
28 12 0.34
29 1 0.03
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (28 bp):
ATATTTTGATAAATAAAAAAAAGTTATA
Found at i:8395402 original size:13 final size:13
Alignment explanation
Indices: 8395378--8395402 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8395368 TATAAAAAGG
8395378 TTTTACTAAAATA
1 TTTTACTAAAATA
8395391 TTTTACTAAAAT
1 TTTTACTAAAAT
8395403 TATGATTTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.48
Consensus pattern (13 bp):
TTTTACTAAAATA
Found at i:8400764 original size:90 final size:90
Alignment explanation
Indices: 8400629--8400870 Score: 256
Period size: 91 Copynumber: 2.7 Consensus size: 90
8400619 AATGGCTTAT
* * * * *
8400629 CCACAAATATGCTAGCAGCTTTTACCTACAAACTCGTCGTGTATTCACAACTATTGACAGCATAT
1 CCACAAATATACTACCAACTTTTATCTACAAACCCGTCGTGTATTCACAACTATTGACAGCATAT
*
8400694 TAACCTCCAAACACTAGTGGTTTATC
66 TAACCTCCAAACACTAGTGATTTA-C
* * * ** *
8400720 CC-CAAATATACTTCCAACTTTTATCTA-TAACCACGTCGTGTATTCACAACTTACTGGTATCAT
1 CCACAAATATACTACCAACTTTTATCTACAAACC-CGTCGTGTATTCACAAC-TATTGACAGCAT
* *
8400783 ATTAACCTGCAAACACTGGTGATTTAC
64 ATTAACCTCCAAACACTAGTGATTTAC
* * * * *
8400810 CCATAAATCTACTAGCACCTTTTATCTACAAACCTGT-GTTGTATTCACAACTATTGACAGC
1 CCACAAATATACTACCAACTTTTATCTACAAACCCGTCG-TGTATTCACAACTATTGACAGC
8400871 GTACTAACTT
Statistics
Matches: 121, Mismatches: 25, Indels: 11
0.77 0.16 0.07
Matches are distributed among these distances:
89 3 0.02
90 47 0.39
91 67 0.55
92 4 0.03
ACGTcount: A:0.31, C:0.26, G:0.11, T:0.32
Consensus pattern (90 bp):
CCACAAATATACTACCAACTTTTATCTACAAACCCGTCGTGTATTCACAACTATTGACAGCATAT
TAACCTCCAAACACTAGTGATTTAC
Found at i:8407428 original size:2 final size:2
Alignment explanation
Indices: 8407421--8407446 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8407411 TTCTACTAGT
8407421 AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG
8407447 GTGGCTAACC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:8409839 original size:25 final size:25
Alignment explanation
Indices: 8409803--8409850 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
8409793 ATTTATAAGA
* *
8409803 TTTTAAATTAATAACAGTTTAATCT
1 TTTTAAATTAATAAAAATTTAATCT
8409828 TTTTAAGA-TAATAAAAATTTAAT
1 TTTTAA-ATTAATAAAAATTTAAT
8409851 TTAATTTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 19 0.95
26 1 0.05
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.46
Consensus pattern (25 bp):
TTTTAAATTAATAAAAATTTAATCT
Found at i:8411849 original size:32 final size:32
Alignment explanation
Indices: 8411806--8411882 Score: 91
Period size: 32 Copynumber: 2.4 Consensus size: 32
8411796 CAAAATAAAT
** *
8411806 TATGAAAAGTTACGAATGTGAAGAGGCTTGAA
1 TATGAAAAGTTACGAATGCAAAGAGACTTGAA
* **
8411838 TATGAAGAGTTAATAATGCAAAGAGACTTGAA
1 TATGAAAAGTTACGAATGCAAAGAGACTTGAA
*
8411870 GATGAAAAGTTAC
1 TATGAAAAGTTAC
8411883 ACACATGCAT
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.44, C:0.06, G:0.25, T:0.25
Consensus pattern (32 bp):
TATGAAAAGTTACGAATGCAAAGAGACTTGAA
Found at i:8416357 original size:32 final size:32
Alignment explanation
Indices: 8416314--8416390 Score: 91
Period size: 32 Copynumber: 2.4 Consensus size: 32
8416304 CAAAATAAAT
** *
8416314 TATGAAAAGTTACGAATGTGAAGAGGCTTGAA
1 TATGAAAAGTTACGAATGCAAAGAGACTTGAA
* **
8416346 TATGAAGAGTTAATAATGCAAAGAGACTTGAA
1 TATGAAAAGTTACGAATGCAAAGAGACTTGAA
*
8416378 GATGAAAAGTTAC
1 TATGAAAAGTTAC
8416391 ACACATGCAT
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.44, C:0.06, G:0.25, T:0.25
Consensus pattern (32 bp):
TATGAAAAGTTACGAATGCAAAGAGACTTGAA
Found at i:8419143 original size:23 final size:24
Alignment explanation
Indices: 8419091--8419183 Score: 109
Period size: 26 Copynumber: 3.8 Consensus size: 24
8419081 GCCATGATCA
*
8419091 GTAAGCTCATTCCGAGCTGATGAACG
1 GTAAGCTCA-TACGAGCTGAT-AACG
8419117 GTAAGCTC-TATCGAGCTGA-AACG
1 GTAAGCTCATA-CGAGCTGATAACG
*
8419140 GTAAGCTCATAAGAGCTGATATATCG
1 GTAAGCTCATACGAGCTGATA-A-CG
8419166 GTAAGCTCATACGAGCTG
1 GTAAGCTCATACGAGCTG
8419184 TGGCGAGTTC
Statistics
Matches: 59, Mismatches: 3, Indels: 10
0.82 0.04 0.14
Matches are distributed among these distances:
23 19 0.32
24 4 0.07
25 9 0.15
26 27 0.46
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (24 bp):
GTAAGCTCATACGAGCTGATAACG
Found at i:8419679 original size:6 final size:6
Alignment explanation
Indices: 8419677--8419713 Score: 74
Period size: 6 Copynumber: 6.2 Consensus size: 6
8419667 TTTAAAATTA
8419677 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT A
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT A
8419714 TATATTTATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:8438856 original size:36 final size:36
Alignment explanation
Indices: 8438816--8438931 Score: 112
Period size: 36 Copynumber: 3.2 Consensus size: 36
8438806 TGTGCTCTGC
*
8438816 AGGGAATCTCATTGTTCACTCTTGGTTGCTTTTGGT
1 AGGGAATCTCACTGTTCACTCTTGGTTGCTTTTGGT
* * * **
8438852 AGGGAATCATTACTATTCATTTCTGTCTTTGC-TTT-GT
1 AGGGAATC-TCACTGTTCA-CTCT-TGGTTGCTTTTGGT
* *
8438889 A-GGAATCTCACTGTTCACTCTTGGTTGCTTTAGGC
1 AGGGAATCTCACTGTTCACTCTTGGTTGCTTTTGGT
8438924 AGGGAATC
1 AGGGAATC
8438932 ACTCTTGTTC
Statistics
Matches: 61, Mismatches: 13, Indels: 12
0.71 0.15 0.14
Matches are distributed among these distances:
33 5 0.08
34 5 0.08
35 10 0.16
36 20 0.33
37 10 0.16
38 6 0.10
39 5 0.08
ACGTcount: A:0.18, C:0.18, G:0.22, T:0.41
Consensus pattern (36 bp):
AGGGAATCTCACTGTTCACTCTTGGTTGCTTTTGGT
Found at i:8438896 original size:72 final size:73
Alignment explanation
Indices: 8438779--8438967 Score: 258
Period size: 72 Copynumber: 2.6 Consensus size: 73
8438769 AACATTTTTA
* * * *
8438779 TAGGGAATC-TCACTGTTCATTTTTGTCTGTGCTCTGCAGGGAATCTCATTGTTCACTCTTGGTT
1 TAGGGAATCATTACTGTTCATTTCTGTCTTTGCTCTGCAGGGAATCTCACTGTTCACTCTTGGTT
*
8438843 GCTTTTGG
66 GCTTTAGG
* * *
8438851 TAGGGAATCATTACTATTCATTTCTGTCTTTGCTTTGTA-GGAATCTCACTGTTCACTCTTGGTT
1 TAGGGAATCATTACTGTTCATTTCTGTCTTTGCTCTGCAGGGAATCTCACTGTTCACTCTTGGTT
8438915 GCTTTAGG
66 GCTTTAGG
* *
8438923 CAGGGAATCACT-CTTGTTCATTTCTGTCTTTGCTCTGCAGGGAAT
1 TAGGGAATCATTAC-TGTTCATTTCTGTCTTTGCTCTGCAGGGAAT
8438968 TTCTCATATT
Statistics
Matches: 101, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
71 1 0.01
72 72 0.71
73 28 0.28
ACGTcount: A:0.16, C:0.20, G:0.22, T:0.42
Consensus pattern (73 bp):
TAGGGAATCATTACTGTTCATTTCTGTCTTTGCTCTGCAGGGAATCTCACTGTTCACTCTTGGTT
GCTTTAGG
Found at i:8440519 original size:22 final size:21
Alignment explanation
Indices: 8440490--8440539 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 21
8440480 GAGCATTACA
*
8440490 AGATATTACAAAATAGATAAT
1 AGATATTACAAAACAGATAAT
*
8440511 AGATGATTACAGAACAGATAAT
1 AGAT-ATTACAAAACAGATAAT
8440533 AGATATT
1 AGATATT
8440540 TCACGACATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
21 7 0.27
22 19 0.73
ACGTcount: A:0.52, C:0.06, G:0.14, T:0.28
Consensus pattern (21 bp):
AGATATTACAAAACAGATAAT
Found at i:8446529 original size:114 final size:113
Alignment explanation
Indices: 8446362--8446897 Score: 743
Period size: 114 Copynumber: 4.7 Consensus size: 113
8446352 AAAATAAGCA
* * *
8446362 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACCTAAGCCCAACGACACCGTTTCCCAAGCTTT
1 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACCTAAGCCCAACGACGCCGTTTTCTAAGCTTT
* *
8446427 CGGGGGTTTAGCGGCGTTTTTAAGAAAGCGCCACTAATGCTCAGGGCT
66 CGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
* * * * *
8446475 TTAGCGGCGTTTTTGATAAAGCGCCCCAGAAAAACTTAAGCCCAACGACGCCGTTTTGTGAGCTT
1 TTAGCGGCGTTTTTGAGAAAGCGCCGCA-AAAAACCTAAGCCCAACGACGCCGTTTTCTAAGCTT
* *
8446540 TTGGGGATTTAGCGGCGTTTTT-AGTAAAGCGCCGCTAATGCTCAGGGAT
65 TCGGGGATTTAGCGGCGTTTTTAAG-AAAGCGCCGCTAATGCTCAGGGCT
** * * * * * *
8446589 TTAGCGGCGCTTCCTCA-AAAACGCCGCAAGAAATCCTAAACCCAACGACGCCGTTTTGTTAGCT
1 TTAGCGGCG-TTTTTGAGAAAGCGCCGCAA-AAAACCTAAGCCCAACGACGCCGTTTTCTAAGCT
*
8446653 TTCGAGGATTTAGCGGCGTTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
64 TTCGGGGATTTAGCGGCG-TTTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
* * *
8446704 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACCTGACCCCAACGACGCCGTTTTCTGAGCTTT
1 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACCTAAGCCCAACGACGCCGTTTTCTAAGCTTT
* *
8446769 CAGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGTTCAGGGCT
66 CGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
*
8446817 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAATTCTAAGCCCAACGACGCCGTTTTCTAAGCTT
1 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAA-CCTAAGCCCAACGACGCCGTTTTCTAAGCTT
**
8446882 TTAGGGATTTAGCGGC
65 TCGGGGATTTAGCGGC
8446898 CAAAAATGCT
Statistics
Matches: 374, Mismatches: 41, Indels: 15
0.87 0.10 0.03
Matches are distributed among these distances:
113 93 0.25
114 227 0.61
115 52 0.14
116 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.26
Consensus pattern (113 bp):
TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACCTAAGCCCAACGACGCCGTTTTCTAAGCTTT
CGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
Found at i:8447262 original size:15 final size:15
Alignment explanation
Indices: 8447227--8447277 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 15
8447217 TATGGATTAG
*
8447227 GGGTT-GGGATTTAA
1 GGGTTAGGGATTAAA
* *
8447241 GGTTTAGGGGTTAAA
1 GGGTTAGGGATTAAA
*
8447256 GGGTTAGGGATTTAA
1 GGGTTAGGGATTAAA
8447271 GGGTTAG
1 GGGTTAG
8447278 ACATGCTAGG
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
14 4 0.13
15 26 0.87
ACGTcount: A:0.24, C:0.00, G:0.43, T:0.33
Consensus pattern (15 bp):
GGGTTAGGGATTAAA
Found at i:8447483 original size:15 final size:15
Alignment explanation
Indices: 8447463--8447509 Score: 62
Period size: 14 Copynumber: 3.3 Consensus size: 15
8447453 TATTTTAAGG
*
8447463 TTTAGGGAGTATGGA
1 TTTAGGGATTATGGA
8447478 TTTAGGGATTAT-GA
1 TTTAGGGATTATGGA
*
8447492 ATTAGGGATTATGG-
1 TTTAGGGATTATGGA
8447506 TTTA
1 TTTA
8447510 AGGGTTGAGA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
14 16 0.57
15 12 0.43
ACGTcount: A:0.28, C:0.00, G:0.32, T:0.40
Consensus pattern (15 bp):
TTTAGGGATTATGGA
Found at i:8447545 original size:14 final size:14
Alignment explanation
Indices: 8447528--8447568 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
8447518 GATTTAAGGT
*
8447528 TTAGGGGTTAGGGG
1 TTAGGAGTTAGGGG
8447542 TTA-GATGTTAGGGG
1 TTAGGA-GTTAGGGG
8447556 TTAGGAGTTAGGG
1 TTAGGAGTTAGGG
8447569 ATTTAAGGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
13 1 0.04
14 21 0.88
15 2 0.08
ACGTcount: A:0.20, C:0.00, G:0.49, T:0.32
Consensus pattern (14 bp):
TTAGGAGTTAGGGG
Found at i:8448347 original size:105 final size:105
Alignment explanation
Indices: 8448222--8448651 Score: 328
Period size: 105 Copynumber: 3.8 Consensus size: 105
8448212 TTTTTATGAG
* * *
8448222 AAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAATAAAAATTTTTTAGCATAGCAAAAC
1 AAACGCCGCAAAAAACAAATCAATATATAAAAAAATAAAATAAAAAATTTTTAGCATAGCAAAAC
* *
8448287 GGCGTCATTTTGCTGAAAATGAAATAGTGATGTTTTTTAA
66 AGCGTCATTTTGCTCAAAATGAAATAGTGATGTTTTTTAA
*
8448327 AAACGCCGCAAAAAACAAATCAATATATATAAAAATAAAATAAAAAATTTTTAGCATAGCAAAAC
1 AAACGCCGCAAAAAACAAATCAATATATAAAAAAATAAAATAAAAAATTTTTAGCATAGCAAAAC
* * * * ** *
8448392 AGCGTTATTTTGTTCAAAATGAAATTTTTTTGCGGCGTTTCTCATAA
66 AGCGTCATTTTGCTCAAAATGAAA-----TAGTGATGTTT-T-TTAA
* * * *
8448439 AAACGCCGCTAAAGGTAAACAATAGCGGCGCAAAAAATAAATCAATTTATAAAA-AAAATAATTT
1 AAACGCCGC-AAA---AAACAA-A-----TCAATATATAAA--AA--AATAAAATAAAA-AA---
* * * * * * *
8448503 TTTTTAACATAGCAAAACAGTGTCATTTTGCTGAAAATGAAACAGCGGCGTTTTTTTATAA
48 TTTTTAGCATAGCAAAACAGCGTCATTTTGCTCAAAATGAAATAG-TG-ATGTTTTT-TAA
*
8448564 AAATGCCGCAAAAAACAAATCAATATATAAAAAAATAAAA-ATAAAAA-TTTTAGCATAGCAAAA
1 AAACGCCGCAAAAAACAAATCAATATATAAAAAAATAAAATA-AAAAATTTTTAGCATAGCAAAA
*
8448627 C-GACGTCATTTTGTTCAAAATGAAA
65 CAG-CGTCATTTTGCTCAAAATGAAA
8448652 AATTTTTTGC
Statistics
Matches: 257, Mismatches: 38, Indels: 58
0.73 0.11 0.16
Matches are distributed among these distances:
105 81 0.32
106 1 0.00
107 35 0.14
110 7 0.03
111 10 0.04
112 15 0.06
113 5 0.02
115 9 0.04
116 6 0.02
117 1 0.00
120 1 0.00
121 6 0.02
122 8 0.03
124 6 0.02
125 17 0.07
126 12 0.05
129 37 0.14
ACGTcount: A:0.48, C:0.13, G:0.12, T:0.28
Consensus pattern (105 bp):
AAACGCCGCAAAAAACAAATCAATATATAAAAAAATAAAATAAAAAATTTTTAGCATAGCAAAAC
AGCGTCATTTTGCTCAAAATGAAATAGTGATGTTTTTTAA
Found at i:8448660 original size:237 final size:243
Alignment explanation
Indices: 8448228--8448936 Score: 836
Period size: 261 Copynumber: 2.9 Consensus size: 243
8448218 TGAGAAACGC
* *
8448228 CGCAAAAAATAAATCAATTTATAAAAAAATAAAATAAAAATTTTTTAGCATAGCAAAACGGCGTC
1 CGCAAAAAATAAATCAATTTAT--AAAAATAAAATAAAAATTTTTTAGCATAGCAAAACAGTGTC
* * *
8448293 ATTTTGCTGAAAATGAAATAG-TG-ATGTTTTT-TAAAAACGCCGCAAAAAACAAATCAATATAT
64 ATTTTGCTGAAAATGAAATAGCGGCGTTTTTTTATAAAAACGCCGCAAAAAACAAATCAATATAT
* * *
8448355 ATAAAAATAAAATAAAAAATTTTTAGCATAGCAAAAC-AGCGTTATTTTGTTCAAAATG-AAATT
129 AAAAAAATAAAAT-AAAAATTTTTAGCATAGCAAAACGA-CGTCATTTTGTTCAAAATGAAAAAT
*
8448418 TTTTTGCGGCGTTTCTCATAAAAACGCCGCTAAAGGTAAACAATAGC-G-G-
192 TTTTTGCGGCGTTTATCATAAAAACGCCGCTAAAGGTAAACAATAGCGGCGA
** *
8448467 CGCAAAAAATAAATCAATTTAT-AAAA-AAAAT-AATTTTTTTTAACATAGCAAAACAGTGTCAT
1 CGCAAAAAATAAATCAATTTATAAAAATAAAATAAAAATTTTTTAGCATAGCAAAACAGTGTCAT
* *
8448529 TTTGCTGAAAATGAAACAGCGGCGTTTTTTTATAAAAATGCCGCAAAAAACAAATCAATATATAA
66 TTTGCTGAAAATGAAATAGCGGCGTTTTTTTATAAAAACGCCGCAAAAAACAAATCAATATATAA
8448594 AAAAATAAAAATAAAAA-TTTTAGCATAGCAAAACGACGTCATTTTGTTCAAAATGAAAAATTTT
131 AAAAAT-AAAATAAAAATTTTTAGCATAGCAAAACGACGTCATTTTGTTCAAAATGAAAAATTTT
* *
8448658 TTGCGGCGTTTATCAAAAAAACGCCGCTAAAGGTAAGCAATAGCGGCGTTTTTAAAAAAAA
195 TTGCGGCGTTTATCATAAAAACGCCGCTAAAGGTAAACAATAGCGGCG------------A
8448719 CGCCACAAAAAATAAATCAATTTATAAAAAAATAAAATAAAAAATTTTTTAGCATAGCAAAACGA
1 CG---CAAAAAATAAATCAATTTAT--AAAAATAAAAT-AAAAATTTTTTAGCATAGCAAAAC-A
* * ***
8448784 CGT-T-ATTTTGTTCAAAATGAAATAGCGGCGTTTTTTTATAAAAACGCCGCAAAATTTAAATCA
59 -GTGTCATTTTGCTGAAAATGAAATAGCGGCGTTTTTTTATAAAAACGCCGCAAAAAACAAATCA
* * ** *
8448847 ATTTAT-AAAAAACAAAATAAATAATTTTTATAATAGCAAAACGGCGTCATTTTGTTCAAAATGA
123 ATATATAAAAAAATAAAATAAA-AATTTTTAGCATAGCAAAACGACGTCATTTTGTTCAAAATGA
*
8448911 AAAATTTTTTGCGGCGTTTTTCATAA
187 AAAATTTTTTGCGGCGTTTATCATAA
8448937 GTAAGCAATA
Statistics
Matches: 403, Mismatches: 33, Indels: 46
0.84 0.07 0.10
Matches are distributed among these distances:
234 44 0.11
235 6 0.01
236 45 0.11
237 91 0.23
238 6 0.01
239 23 0.06
252 2 0.00
255 20 0.05
258 4 0.01
259 13 0.03
260 8 0.02
261 137 0.34
262 2 0.00
263 2 0.00
ACGTcount: A:0.46, C:0.12, G:0.12, T:0.29
Consensus pattern (243 bp):
CGCAAAAAATAAATCAATTTATAAAAATAAAATAAAAATTTTTTAGCATAGCAAAACAGTGTCAT
TTTGCTGAAAATGAAATAGCGGCGTTTTTTTATAAAAACGCCGCAAAAAACAAATCAATATATAA
AAAAATAAAATAAAAATTTTTAGCATAGCAAAACGACGTCATTTTGTTCAAAATGAAAAATTTTT
TGCGGCGTTTATCATAAAAACGCCGCTAAAGGTAAACAATAGCGGCGA
Found at i:8448905 original size:107 final size:107
Alignment explanation
Indices: 8448696--8448912 Score: 312
Period size: 109 Copynumber: 2.0 Consensus size: 107
8448686 AAAGGTAAGC
*
8448696 AATAGCGGCGTTTTTAAAAAAAACGCCACAAAAAATAAATCAATTTATAAAAAAATAAAATAAAA
1 AATAGCGGCGTTTTTAAAAAAAACGCCACAAAAAATAAATCAATTTATAAAAAAACAAAATAAAA
*
8448761 AATTTTTTAGCATAGCAAAACGACGTTATTTTGTTCAAAATGA
66 AATTTTTTA-CATAGCAAAACGACGTCATTTTGTTCAAAATGA
* * * **
8448804 AATAGCGGCGTTTTTTTATAAAAACGCCGCAAAATTTAAATCAATTTAT-AAAAAACAAAATAAA
1 AATAGCGGCG-TTTTTAAAAAAAACGCCACAAAAAATAAATCAATTTATAAAAAAACAAAATAAA
* *
8448868 TAATTTTTATA-ATAGCAAAACGGCGTCATTTTGTTCAAAATGA
65 AAATTTTT-TACATAGCAAAACGACGTCATTTTGTTCAAAATGA
8448911 AA
1 AA
8448913 AATTTTTTGC
Statistics
Matches: 98, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
107 32 0.33
108 31 0.32
109 35 0.36
ACGTcount: A:0.48, C:0.12, G:0.11, T:0.29
Consensus pattern (107 bp):
AATAGCGGCGTTTTTAAAAAAAACGCCACAAAAAATAAATCAATTTATAAAAAAACAAAATAAAA
AATTTTTTACATAGCAAAACGACGTCATTTTGTTCAAAATGA
Found at i:8453126 original size:43 final size:43
Alignment explanation
Indices: 8453074--8453172 Score: 126
Period size: 43 Copynumber: 2.3 Consensus size: 43
8453064 ACCTATAATA
* * * * *
8453074 GCGTTTGTGGTAGAAGTGTCGCTAAAGGTCATGGTATTTAGAG
1 GCGTTTGTGGGAAAAGTGCCGCCAAAGGTCATGATATTTAGAG
* *
8453117 GCGTTTGTGGGAAAAGTGCCGCCAAAGGTCATGATCTTTAGTG
1 GCGTTTGTGGGAAAAGTGCCGCCAAAGGTCATGATATTTAGAG
*
8453160 GCGTTTGTAGGAA
1 GCGTTTGTGGGAA
8453173 TGCGCCGCTA
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 48 1.00
ACGTcount: A:0.23, C:0.12, G:0.34, T:0.30
Consensus pattern (43 bp):
GCGTTTGTGGGAAAAGTGCCGCCAAAGGTCATGATATTTAGAG
Found at i:8453191 original size:85 final size:85
Alignment explanation
Indices: 8453093--8453250 Score: 203
Period size: 85 Copynumber: 1.9 Consensus size: 85
8453083 GTAGAAGTGT
* *** *
8453093 CGCTAAAGGTCATGGTATTTAGAGGCG-TTTGTGGGA-AAAGTGCCGCCAAAGGTCATGATCTTT
1 CGCTAAAGATCATGGTATTTAGAGGCGCTTT-TCCCACAAA-CGCCGCCAAAGGTCATGATCTTT
*
8453156 AGTGGCGTTTGTAGGAATGCGC
64 AGCGGCGTTTGTAGGAATGCGC
* * *
8453178 CGCTAAAGATCATGGTCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGGTCATGATCTTTAG
1 CGCTAAAGATCATGGTATTTAGAGGCGCTTTTCCCACAAACGCCGCCAAAGGTCATGATCTTTAG
8453243 CGGCGTTT
66 CGGCGTTT
8453251 ATTTTTGAAA
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
85 56 0.90
86 6 0.10
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.28
Consensus pattern (85 bp):
CGCTAAAGATCATGGTATTTAGAGGCGCTTTTCCCACAAACGCCGCCAAAGGTCATGATCTTTAG
CGGCGTTTGTAGGAATGCGC
Found at i:8453197 original size:42 final size:43
Alignment explanation
Indices: 8453093--8453250 Score: 151
Period size: 43 Copynumber: 3.7 Consensus size: 43
8453083 GTAGAAGTGT
* * *
8453093 CGCTAAAGGTCATGGTATTTAGAGGCGTTTGTGGGAAAAGTGC
1 CGCTAAAGGTCATGGTCTTTAGAGGCGTTTGTAGGAAAAGCGC
* * * *
8453136 CGCCAAAGGTCATGATCTTTAGTGGCGTTTGTAGG-AATGCGC
1 CGCTAAAGGTCATGGTCTTTAGAGGCGTTTGTAGGAAAAGCGC
* * ***
8453178 CGCTAAAGATCATGGTCTTTAGCGGCGCTTT-TCCCACAAA-CGC
1 CGCTAAAGGTCATGGTCTTTAGAGGCG-TTTGTAGGA-AAAGCGC
* *
8453221 CGCTAAAGGTCATGATCTTTAGCGGCGTTT
1 CGCTAAAGGTCATGGTCTTTAGAGGCGTTT
8453251 ATTTTTGAAA
Statistics
Matches: 95, Mismatches: 17, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
42 32 0.34
43 61 0.64
44 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.28
Consensus pattern (43 bp):
CGCTAAAGGTCATGGTCTTTAGAGGCGTTTGTAGGAAAAGCGC
Found at i:8455467 original size:11 final size:11
Alignment explanation
Indices: 8455450--8455483 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
8455440 GTTATTGTTT
*
8455450 CAATAATTTTG
1 CAATAATTTTA
*
8455461 TAATAATTTTA
1 CAATAATTTTA
8455472 CAATAATTTTA
1 CAATAATTTTA
8455483 C
1 C
8455484 GTTTAATATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.41, C:0.09, G:0.03, T:0.47
Consensus pattern (11 bp):
CAATAATTTTA
Found at i:8461836 original size:17 final size:18
Alignment explanation
Indices: 8461799--8461836 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
8461789 GATTGAGAGT
* *
8461799 GAAAAGGAATGTGAAACA
1 GAAAAGAAATGTGAAAAA
8461817 GAAAAGAAAT-TGAAAAA
1 GAAAAGAAATGTGAAAAA
8461834 GAA
1 GAA
8461837 GTTGAAGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.63, C:0.03, G:0.24, T:0.11
Consensus pattern (18 bp):
GAAAAGAAATGTGAAAAA
Found at i:8461849 original size:13 final size:12
Alignment explanation
Indices: 8461818--8461872 Score: 51
Period size: 12 Copynumber: 4.6 Consensus size: 12
8461808 TGTGAAACAG
*
8461818 AAAAGAAATTGA
1 AAAAGAAGTTGA
8461830 AAAAGAAGTTGA
1 AAAAGAAGTTGA
*
8461842 AGAAAGAAG-AGA
1 A-AAAGAAGTTGA
*
8461854 AAATG-AGTTAGA
1 AAAAGAAGTT-GA
8461866 AAAAGAA
1 AAAAGAA
8461873 ACAAAAGAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
10 2 0.06
11 3 0.09
12 21 0.62
13 8 0.24
ACGTcount: A:0.64, C:0.00, G:0.24, T:0.13
Consensus pattern (12 bp):
AAAAGAAGTTGA
Found at i:8465755 original size:19 final size:18
Alignment explanation
Indices: 8465722--8465785 Score: 67
Period size: 18 Copynumber: 3.4 Consensus size: 18
8465712 TTCTCTCAAC
8465722 AAAAATTTTTAAAAAATCT
1 AAAAATTTTT-AAAAATCT
8465741 AAATAATTTTT-AAAATCT
1 AAA-AATTTTTAAAAATCT
* *
8465759 AAAATATTTATAAAAATTT
1 AAAA-ATTTTTAAAAATCT
*
8465778 CAAAATTT
1 AAAAATTT
8465786 ATTTTTTTTA
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
17 1 0.03
18 19 0.49
19 12 0.31
20 7 0.18
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.41
Consensus pattern (18 bp):
AAAAATTTTTAAAAATCT
Found at i:8465827 original size:15 final size:16
Alignment explanation
Indices: 8465801--8465834 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
8465791 TTTTAAAACT
8465801 ATAAAAATTTCAAAAA
1 ATAAAAATTTCAAAAA
8465817 ATAAAAA-TTCAAAAA
1 ATAAAAATTTCAAAAA
8465832 ATA
1 ATA
8465835 TATATAAAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 11 0.61
16 7 0.39
ACGTcount: A:0.71, C:0.06, G:0.00, T:0.24
Consensus pattern (16 bp):
ATAAAAATTTCAAAAA
Found at i:8467038 original size:29 final size:29
Alignment explanation
Indices: 8466979--8467038 Score: 84
Period size: 29 Copynumber: 2.1 Consensus size: 29
8466969 TATGGTTTAA
* *
8466979 TGTGCAATTGTATACATGAACTTTAGTTT
1 TGTGCAATTGTATACATGAAATTTAGATT
* *
8467008 TGTGCAATTTTATACATGAAATTTTGATT
1 TGTGCAATTGTATACATGAAATTTAGATT
8467037 TG
1 TG
8467039 ATCCAGTTCT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.28, C:0.08, G:0.17, T:0.47
Consensus pattern (29 bp):
TGTGCAATTGTATACATGAAATTTAGATT
Found at i:8471957 original size:19 final size:18
Alignment explanation
Indices: 8471924--8471977 Score: 65
Period size: 18 Copynumber: 2.9 Consensus size: 18
8471914 CTCTCTCAAC
8471924 AAAAATTTTTAAAAAATCT
1 AAAAATTTTT-AAAAATCT
8471943 AAATAATTTTT-AAAATCT
1 AAA-AATTTTTAAAAATCT
*
8471961 AAAATATTTATAAAAAT
1 AAAA-ATTTTTAAAAAT
8471978 TTCAAATTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
17 1 0.03
18 15 0.48
19 8 0.26
20 7 0.23
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (18 bp):
AAAAATTTTTAAAAATCT
Found at i:8472027 original size:15 final size:16
Alignment explanation
Indices: 8471998--8472031 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
8471988 TTTTTAAATT
8471998 ATAAAAATTTCAAAAA
1 ATAAAAATTTCAAAAA
8472014 ATAAAAATTT-AAAAA
1 ATAAAAATTTCAAAAA
8472029 ATA
1 ATA
8472032 TATATAAAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (16 bp):
ATAAAAATTTCAAAAA
Found at i:8473373 original size:29 final size:30
Alignment explanation
Indices: 8473323--8473399 Score: 93
Period size: 29 Copynumber: 2.5 Consensus size: 30
8473313 CTGCAACTAC
* *
8473323 ACATGAACTATGGTTTAATGTGCAATTGTAT
1 ACATGAACTTTGATTT-ATGTGCAATTGTAT
*
8473354 ACATGAACTTTGATTT-TGTGCAATTTTAT
1 ACATGAACTTTGATTTATGTGCAATTGTAT
*
8473383 ACATGAAATTTTGATTT
1 ACATG-AACTTTGATTT
8473400 GATCCAGTTC
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
29 17 0.41
30 10 0.24
31 14 0.34
ACGTcount: A:0.31, C:0.09, G:0.16, T:0.44
Consensus pattern (30 bp):
ACATGAACTTTGATTTATGTGCAATTGTAT
Found at i:8477416 original size:73 final size:73
Alignment explanation
Indices: 8477297--8477482 Score: 345
Period size: 73 Copynumber: 2.5 Consensus size: 73
8477287 ACAACTTGAC
*
8477297 AACTTAGTTGGAATGCAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
8477362 CACTAACA
66 CACTAACA
*
8477370 AACTTAGTTGGAATACAACTAAGTTTCATCATCACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
8477435 CACTAACA
66 CACTAACA
*
8477443 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCA
8477483 AATAATAATA
Statistics
Matches: 109, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
73 109 1.00
ACGTcount: A:0.40, C:0.25, G:0.07, T:0.27
Consensus pattern (73 bp):
AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
CACTAACA
Found at i:8477491 original size:3 final size:3
Alignment explanation
Indices: 8477483--8477514 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
8477473 ATTACATCCA
8477483 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
8477515 AACATGTGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:8480726 original size:3 final size:3
Alignment explanation
Indices: 8480718--8480749 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
8480708 ATTACATCCA
8480718 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
8480750 AACATGTGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:8482542 original size:5 final size:5
Alignment explanation
Indices: 8482532--8482572 Score: 82
Period size: 5 Copynumber: 8.2 Consensus size: 5
8482522 TGAGCATTCG
8482532 ATCGA ATCGA ATCGA ATCGA ATCGA ATCGA ATCGA ATCGA A
1 ATCGA ATCGA ATCGA ATCGA ATCGA ATCGA ATCGA ATCGA A
8482573 AATTTTTAAG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 36 1.00
ACGTcount: A:0.41, C:0.20, G:0.20, T:0.20
Consensus pattern (5 bp):
ATCGA
Found at i:8483681 original size:9 final size:9
Alignment explanation
Indices: 8483664--8483694 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
8483654 TCGAGTTGAT
8483664 TCGAATAAC
1 TCGAATAAC
*
8483673 TCGATTAAC
1 TCGAATAAC
8483682 TCGAATAAC
1 TCGAATAAC
8483691 TCGA
1 TCGA
8483695 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:8484197 original size:19 final size:21
Alignment explanation
Indices: 8484173--8484211 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
8484163 AATGCTAGCC
8484173 CAAACCAC-A-TGGCCCAAAT
1 CAAACCACAATTGGCCCAAAT
*
8484192 CAAACCCCAATTGGCCCAAA
1 CAAACCACAATTGGCCCAAA
8484212 AAAATCAAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 7 0.41
20 1 0.06
21 9 0.53
ACGTcount: A:0.41, C:0.38, G:0.10, T:0.10
Consensus pattern (21 bp):
CAAACCACAATTGGCCCAAAT
Found at i:8485853 original size:12 final size:12
Alignment explanation
Indices: 8485830--8485854 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8485820 TTATGTAATT
8485830 TATATACATATC
1 TATATACATATC
8485842 TATATACATATC
1 TATATACATATC
8485854 T
1 T
8485855 TTTAATTTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.16, G:0.00, T:0.44
Consensus pattern (12 bp):
TATATACATATC
Found at i:8485915 original size:86 final size:85
Alignment explanation
Indices: 8485744--8485932 Score: 206
Period size: 86 Copynumber: 2.2 Consensus size: 85
8485734 CGTAGTTATA
* * *
8485744 TATATATATATCTATATACACATTTTTTTAATTTCATAAATACGTATATACATATTTATATACTT
1 TATATATATATCTATATACACATTCTTTTAATTTCATAAATACATATATACATATCTATATA-TT
*
8485809 ATATTTTTATATTATGTAATT
65 ATATTTTTATATTATATAATT
* * * *
8485830 TATATACATATCTATATACATA-TCTTTTAATTTTCATAAATATATTTATACAT-TCT-TAT-TT
1 TATATATATATCTATATACACATTCTTTTAA-TTTCATAAATACATATATACATATCTATATATT
*
8485891 ATATTTCTTATTATGTCTTATAATT
65 ATATTT-TTA-TAT-T-ATATAATT
*
8485916 TATATATATATATATAT
1 TATATATATATCTATAT
8485933 GTGTGTGTGT
Statistics
Matches: 87, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
82 8 0.09
83 3 0.03
84 6 0.07
85 10 0.11
86 60 0.69
ACGTcount: A:0.37, C:0.08, G:0.02, T:0.53
Consensus pattern (85 bp):
TATATATATATCTATATACACATTCTTTTAATTTCATAAATACATATATACATATCTATATATTA
TATTTTTATATTATATAATT
Found at i:8487407 original size:43 final size:43
Alignment explanation
Indices: 8487359--8487446 Score: 176
Period size: 43 Copynumber: 2.0 Consensus size: 43
8487349 AACACAGGAC
8487359 CTCAGACACAAATAATTAATACTTAGCCACTAAACCAAATTAA
1 CTCAGACACAAATAATTAATACTTAGCCACTAAACCAAATTAA
8487402 CTCAGACACAAATAATTAATACTTAGCCACTAAACCAAATTAA
1 CTCAGACACAAATAATTAATACTTAGCCACTAAACCAAATTAA
8487445 CT
1 CT
8487447 TGTTTGACAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.48, C:0.24, G:0.05, T:0.24
Consensus pattern (43 bp):
CTCAGACACAAATAATTAATACTTAGCCACTAAACCAAATTAA
Found at i:8491299 original size:32 final size:32
Alignment explanation
Indices: 8491253--8491314 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
8491243 GGGCATAAAT
*
8491253 TTTATCCCGAGATTCTCTAGTTTTCAGAATAC
1 TTTATCCCGAGATTCTCAAGTTTTCAGAATAC
* * *
8491285 TTTATCTCGGGATTCTCAATTTTTCAGAAT
1 TTTATCCCGAGATTCTCAAGTTTTCAGAAT
8491315 CCAATCTAAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.24, C:0.19, G:0.13, T:0.44
Consensus pattern (32 bp):
TTTATCCCGAGATTCTCAAGTTTTCAGAATAC
Found at i:8501744 original size:5 final size:5
Alignment explanation
Indices: 8501736--8501783 Score: 69
Period size: 5 Copynumber: 9.6 Consensus size: 5
8501726 TTAAGTATAA
* * *
8501736 ATATT ATATT AGATT ATATT AGATT ATAAT ATATT ATATT ATATT ATA
1 ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATA
8501784 AAAGAAATAA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
5 37 1.00
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (5 bp):
ATATT
Found at i:8502757 original size:25 final size:25
Alignment explanation
Indices: 8502729--8502834 Score: 185
Period size: 25 Copynumber: 4.2 Consensus size: 25
8502719 ACCTTAGCGC
8502729 GCTCTCTGATTATTAGCACGTCAGT
1 GCTCTCTGATTATTAGCACGTCAGT
8502754 GCTCTCTGATTATTAGCACGTCAGT
1 GCTCTCTGATTATTAGCACGTCAGT
* *
8502779 GCTATCTGATTATTAGCACGTTAGT
1 GCTCTCTGATTATTAGCACGTCAGT
*
8502804 GCTCTCTGATTACTAGCACGTCAGT
1 GCTCTCTGATTATTAGCACGTCAGT
8502829 GCTCTC
1 GCTCTC
8502835 CGTTTAGCCC
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 76 1.00
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.36
Consensus pattern (25 bp):
GCTCTCTGATTATTAGCACGTCAGT
Found at i:8502864 original size:22 final size:22
Alignment explanation
Indices: 8502742--8502881 Score: 95
Period size: 25 Copynumber: 6.0 Consensus size: 22
8502732 CTCTGATTAT
*
8502742 TAGCACGTCAGTGCTCTCTGATTA
1 TAGCACTTCAGTGCTCTCTG--TA
* *
8502766 TTAGCACGTCAGTGCTATCTGATTA
1 -TAGCACTTCAGTGCTCTCTG--TA
8502791 TTAGCACGTT-AGTGCTCTCTGATTA
1 -TAGCAC-TTCAGTGCTCTCTG--TA
* * *
8502816 CTAGCACGTCAGTGCTCTCCGTT
1 -TAGCACTTCAGTGCTCTCTGTA
* *
8502839 TAGCCCATT-TGTGCTCTCTGTA
1 TAGCAC-TTCAGTGCTCTCTGTA
8502861 TAGCACTTCAGTGCTCTCTGT
1 TAGCACTTCAGTGCTCTCTGT
8502882 TCATTAGTGC
Statistics
Matches: 97, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.02
22 31 0.32
23 2 0.02
24 1 0.01
25 60 0.62
26 1 0.01
ACGTcount: A:0.18, C:0.26, G:0.20, T:0.36
Consensus pattern (22 bp):
TAGCACTTCAGTGCTCTCTGTA
Found at i:8504700 original size:21 final size:21
Alignment explanation
Indices: 8504670--8504720 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
8504660 GAGCTGAACG
*
8504670 GAAACCCATAAGGGTTAAACA
1 GAAACTCATAAGGGTTAAACA
*
8504691 GAAACTCATATGGGTTAAACA
1 GAAACTCATAAGGGTTAAACA
8504712 -AAAGCTCAT
1 GAAA-CTCAT
8504721 GAGAGCTAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
20 3 0.11
21 24 0.89
ACGTcount: A:0.45, C:0.18, G:0.18, T:0.20
Consensus pattern (21 bp):
GAAACTCATAAGGGTTAAACA
Done.