Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62811768
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 736185 characters in sequence are not A, C, G, or T
File 32 of 211
Found at i:8504830 original size:24 final size:24
Alignment explanation
Indices: 8504798--8504856 Score: 82
Period size: 24 Copynumber: 2.5 Consensus size: 24
8504788 TTGATGTAAC
*
8504798 TCATCCTTTGCATATACCTTCAAT
1 TCATCCTTTGCATATACCGTCAAT
* * *
8504822 TCATCCTTTTCATTTATCGTCAAT
1 TCATCCTTTGCATATACCGTCAAT
8504846 TCATCCTTTGC
1 TCATCCTTTGC
8504857 CATAGAACGA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.20, C:0.29, G:0.05, T:0.46
Consensus pattern (24 bp):
TCATCCTTTGCATATACCGTCAAT
Found at i:8506274 original size:18 final size:17
Alignment explanation
Indices: 8506232--8506287 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 17
8506222 ATTAATTAAT
8506232 TTATTATTATTTTATTA
1 TTATTATTATTTTATTA
* *
8506249 CTATTTATTATTGTTATTG
1 TTA-TTATTATT-TTATTA
8506268 TTATTATTATATTTGATTA
1 TTATTATTAT-TTT-ATTA
8506287 T
1 T
8506288 ATTCCTATTT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
17 2 0.06
18 17 0.55
19 12 0.39
ACGTcount: A:0.27, C:0.02, G:0.05, T:0.66
Consensus pattern (17 bp):
TTATTATTATTTTATTA
Found at i:8512530 original size:28 final size:28
Alignment explanation
Indices: 8512448--8512531 Score: 107
Period size: 28 Copynumber: 3.0 Consensus size: 28
8512438 GTATCAGTAC
* * *
8512448 AGTGTAGGCC-TAGCCCGATACAGTAAC
1 AGTGTGGGCCTTAGCCCAATACAGTAAT
* * *
8512475 AGTTTGAGCCTTAGTCCAATACAGTAAT
1 AGTGTGGGCCTTAGCCCAATACAGTAAT
8512503 AGTGTGGGCCTTAGCCCAATACAGTAAT
1 AGTGTGGGCCTTAGCCCAATACAGTAAT
8512531 A
1 A
8512532 ATACAGTGCC
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
27 7 0.15
28 40 0.85
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (28 bp):
AGTGTGGGCCTTAGCCCAATACAGTAAT
Found at i:8512900 original size:27 final size:27
Alignment explanation
Indices: 8512870--8512928 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
8512860 ATCTCCTAGA
8512870 GGTATAACAGTCATTTTACCCTATAAG
1 GGTATAACAGTCATTTTACCCTATAAG
** * *
8512897 GGTATTTCAGTCATTTTACCCTGTAGG
1 GGTATAACAGTCATTTTACCCTATAAG
8512924 GGTAT
1 GGTAT
8512929 TTCATACAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.37
Consensus pattern (27 bp):
GGTATAACAGTCATTTTACCCTATAAG
Found at i:8512929 original size:27 final size:27
Alignment explanation
Indices: 8512877--8512932 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
8512867 AGAGGTATAA
8512877 CAGTCATTTTACCCTATAAGGGTATTT
1 CAGTCATTTTACCCTATAAGGGTATTT
* *
8512904 CAGTCATTTTACCCTGTAGGGGTATTT
1 CAGTCATTTTACCCTATAAGGGTATTT
8512931 CA
1 CA
8512933 TACAAGTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.23, C:0.20, G:0.18, T:0.39
Consensus pattern (27 bp):
CAGTCATTTTACCCTATAAGGGTATTT
Found at i:8513401 original size:43 final size:43
Alignment explanation
Indices: 8513340--8513425 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
8513330 AGGGAGATAG
8513340 CTCTCGATCAAAAAGGAAATAATAGGAGGTAGAAATCAAAGAC
1 CTCTCGATCAAAAAGGAAATAATAGGAGGTAGAAATCAAAGAC
8513383 CTCTCGATCAAAAAGGAAATAATAGGAGGTAGAAATCAAAGAC
1 CTCTCGATCAAAAAGGAAATAATAGGAGGTAGAAATCAAAGAC
8513426 GGAAAGAGAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.49, C:0.14, G:0.21, T:0.16
Consensus pattern (43 bp):
CTCTCGATCAAAAAGGAAATAATAGGAGGTAGAAATCAAAGAC
Found at i:8519608 original size:23 final size:22
Alignment explanation
Indices: 8519582--8519624 Score: 77
Period size: 23 Copynumber: 1.9 Consensus size: 22
8519572 GAAATAAAAG
8519582 CAACGTAAATTTAGATGTTGCCA
1 CAACGTAAATTTAG-TGTTGCCA
8519605 CAACGTAAATTTAGTGTTGC
1 CAACGTAAATTTAGTGTTGC
8519625 GATATAACAG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.33
Consensus pattern (22 bp):
CAACGTAAATTTAGTGTTGCCA
Found at i:8521236 original size:21 final size:21
Alignment explanation
Indices: 8521212--8521254 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
8521202 AACAAGCTAA
* *
8521212 CAAATCTTTCTAAGACTTAGT
1 CAAATATTCCTAAGACTTAGT
*
8521233 CAAATATTCCTAGGACTTAGT
1 CAAATATTCCTAAGACTTAGT
8521254 C
1 C
8521255 TTATTAATAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.35
Consensus pattern (21 bp):
CAAATATTCCTAAGACTTAGT
Found at i:8523369 original size:39 final size:39
Alignment explanation
Indices: 8523269--8523418 Score: 142
Period size: 39 Copynumber: 3.8 Consensus size: 39
8523259 AGCGGCGCTT
** *
8523269 TTAGCGGCGATTGGACAACAAACGCCGCTAAAAATTAAGCA
1 TTAGCGGCGATTTTACAA-AAACGCCGCTAAATA-TAAGCA
* * * *
8523310 TTAGCGGCGATTTAAAAAAAACGCCGCTAAATATCAGTA
1 TTAGCGGCGATTTTACAAAAACGCCGCTAAATATAAGCA
* * *
8523349 TTACCGGCGCTTTTACAAAAACGCCGCT-AATAATGAGCA
1 TTAGCGGCGATTTTACAAAAACGCCGCTAAAT-ATAAGCA
* *
8523388 TTAGCGGCGTTTCTTA-AAAAGCGCCGCTAAA
1 TTAGCGGCGATT-TTACAAAAACGCCGCTAAA
8523419 AACCTAAACC
Statistics
Matches: 91, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
38 3 0.03
39 54 0.59
40 19 0.21
41 15 0.16
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.22
Consensus pattern (39 bp):
TTAGCGGCGATTTTACAAAAACGCCGCTAAATATAAGCA
Found at i:8523710 original size:114 final size:114
Alignment explanation
Indices: 8523388--8523714 Score: 415
Period size: 113 Copynumber: 2.9 Consensus size: 114
8523378 ATAATGAGCA
* * * *
8523388 TTAGCGGCGTTTCTTAAAAAGCGCCGCTAAAAACCTAAACCAAACGACGTCGTTTTTCTTAGTTT
1 TTAGCGGCGTTTCTTAAAAAGCGCCGCAAAAAACCTAAGCCCAACGACATCGTTTTTCTTAGTTT
* * * *
8523453 TCGAGGCTTTGGTGGCGTTTTTGGAGAAGCGCAAG-TAATTCTCAGGGCT
66 TCGAGGCTTTGGTGGCGTTTTTGGAAAAGCGC-CGCTAATGCTCAAGGCT
* * *
8523502 TTAGCAGCGTTTCTTAAAAAGCGCCGCAAAAGACCTAAGCCCAACGACATC-ATTTTCTTAGTTT
1 TTAGCGGCGTTTCTTAAAAAGCGCCGCAAAAAACCTAAGCCCAACGACATCGTTTTTCTTAGTTT
* * * *
8523566 TCGAGGCTTTGGTGGCGTTTTCGGGAAAGCGCCGCTAATGCTCAATGTT
66 TCGAGGCTTTGGTGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAAGGCT
* * * * *
8523615 TTAGCGGCATTTTTTAAAAATCGCCACAAAAAACCGAAGCCCAACGACATCGTTTTTCTTAGTTT
1 TTAGCGGCGTTTCTTAAAAAGCGCCGCAAAAAACCTAAGCCCAACGACATCGTTTTTCTTAGTTT
** * *
8523680 GGGAGGCTTTAGTGGCGTTTTTGTAAAAGCGCCGC
66 TCGAGGCTTTGGTGGCGTTTTTGGAAAAGCGCCGC
8523715 AAAAAGCCTA
Statistics
Matches: 182, Mismatches: 29, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
112 1 0.01
113 95 0.52
114 86 0.47
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.30
Consensus pattern (114 bp):
TTAGCGGCGTTTCTTAAAAAGCGCCGCAAAAAACCTAAGCCCAACGACATCGTTTTTCTTAGTTT
TCGAGGCTTTGGTGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAAGGCT
Found at i:8523733 original size:73 final size:72
Alignment explanation
Indices: 8523614--8523751 Score: 188
Period size: 73 Copynumber: 1.9 Consensus size: 72
8523604 TGCTCAATGT
*
8523614 TTTAGCGGCATTTTTTAAAAATCGCCACAAAAAACCGAAGCCCAACGACATCGTTTTTCTTAGTT
1 TTTAGCGGCATTTTTTAAAAAGCGCCACAAAAAACCGAAGCCCAACGACATCG-TTTTCTTAGTT
8523679 TGGGAGGC
65 TGGGAGGC
* * * * * *
8523687 TTTAGTGGCGTTTTTGT-AAAAGCGCCGCAAAAAGCCTAAGCCCAACGATATCGTTTTCTTAGTT
1 TTTAGCGGCATTTTT-TAAAAAGCGCCACAAAAAACCGAAGCCCAACGACATCGTTTTCTTAGTT
8523751 T
65 T
8523752 TCGAGTCTTT
Statistics
Matches: 57, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
72 12 0.21
73 44 0.77
74 1 0.02
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (72 bp):
TTTAGCGGCATTTTTTAAAAAGCGCCACAAAAAACCGAAGCCCAACGACATCGTTTTCTTAGTTT
GGGAGGC
Found at i:8523775 original size:73 final size:73
Alignment explanation
Indices: 8523614--8523775 Score: 175
Period size: 73 Copynumber: 2.2 Consensus size: 73
8523604 TGCTCAATGT
* * *
8523614 TTTAGCGGC-ATTTTTTAAAAATCGCCACAAAAAACCGAAGCCCAACGACATCGTTTTTCTTAGT
1 TTTAGTGGCGATTTTGT-AAAAGCGCCACAAAAAACCGAAGCCCAACGACATCGTTTTTCTTAGT
*
8523678 TTGGGAGGC
65 TTGCGAGGC
* * * * *
8523687 TTTAGTGGCGTTTTTGTAAAAGCGCCGCAAAAAGCCTAAGCCCAACGATATCG-TTTTCTTAGTT
1 TTTAGTGGCGATTTTGTAAAAGCGCCACAAAAAACCGAAGCCCAACGACATCGTTTTTCTTAGTT
* *
8523751 TTCGAGTC
66 TGCGAGGC
* *
8523759 TTTGGTTGGGGATTTTG
1 TTTAG-TGGCGATTTTG
8523776 CGGCGTTTTT
Statistics
Matches: 73, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
72 20 0.27
73 48 0.66
74 5 0.07
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.33
Consensus pattern (73 bp):
TTTAGTGGCGATTTTGTAAAAGCGCCACAAAAAACCGAAGCCCAACGACATCGTTTTTCTTAGTT
TGCGAGGC
Found at i:8524216 original size:7 final size:7
Alignment explanation
Indices: 8524183--8524356 Score: 51
Period size: 7 Copynumber: 25.1 Consensus size: 7
8524173 TGCAAATTAT
8524183 GGGTTTA
1 GGGTTTA
* *
8524190 GTGATTA
1 GGGTTTA
*
8524197 TGGTTTA
1 GGGTTTA
**
8524204 CAGTTTA
1 GGGTTTA
8524211 GGGTTTA
1 GGGTTTA
* *
8524218 CGAG-TTG
1 -GGGTTTA
8524225 GGGTTTA
1 GGGTTTA
*
8524232 AGGTTTA
1 GGGTTTA
8524239 CGGG-TT-
1 -GGGTTTA
* *
8524245 GGGGTTG
1 GGGTTTA
8524252 GGGTTTA
1 GGGTTTA
*
8524259 AGGTTTA
1 GGGTTTA
*
8524266 CGGG-TTG
1 -GGGTTTA
*
8524273 GGGTTCA
1 GGGTTTA
*
8524280 GGGTCTA
1 GGGTTTA
*
8524287 -GG-CTA
1 GGGTTTA
8524292 -GGTTTA
1 GGGTTTA
*
8524298 GGGATTA
1 GGGTTTA
* *
8524305 TGATTT-
1 GGGTTTA
8524311 GGGTTTA
1 GGGTTTA
8524318 GGGTTTAA
1 GGGTTT-A
8524326 GGGATTTAA
1 GGG-TTT-A
8524335 GGG-TTA
1 GGGTTTA
*
8524341 TGTGTTTA
1 -GGGTTTA
8524349 GGGTTTA
1 GGGTTTA
8524356 G
1 G
8524357 ATTGATTAGT
Statistics
Matches: 120, Mismatches: 33, Indels: 28
0.66 0.18 0.15
Matches are distributed among these distances:
5 8 0.07
6 16 0.13
7 75 0.62
8 13 0.11
9 8 0.07
ACGTcount: A:0.17, C:0.04, G:0.39, T:0.40
Consensus pattern (7 bp):
GGGTTTA
Found at i:8524230 original size:21 final size:21
Alignment explanation
Indices: 8524206--8524258 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
8524196 ATGGTTTACA
8524206 GTTTAGGGTTTACGAGTTGGG
1 GTTTAGGGTTTACGAGTTGGG
* *
8524227 GTTTAAGGTTTACGGGTTGGG
1 GTTTAGGGTTTACGAGTTGGG
*
8524248 G-TTGGGGTTTA
1 GTTTAGGGTTTA
8524259 AGGTTTACGG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 8 0.29
21 20 0.71
ACGTcount: A:0.13, C:0.04, G:0.43, T:0.40
Consensus pattern (21 bp):
GTTTAGGGTTTACGAGTTGGG
Found at i:8524258 original size:27 final size:27
Alignment explanation
Indices: 8524221--8524277 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
8524211 GGGTTTACGA
8524221 GTTGGGGTTTAAGGTTTACGGGTTGGG
1 GTTGGGGTTTAAGGTTTACGGGTTGGG
8524248 GTTGGGGTTTAAGGTTTACGGGTTGGG
1 GTTGGGGTTTAAGGTTTACGGGTTGGG
8524275 GTT
1 GTT
8524278 CAGGGTCTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.11, C:0.04, G:0.47, T:0.39
Consensus pattern (27 bp):
GTTGGGGTTTAAGGTTTACGGGTTGGG
Found at i:8524927 original size:75 final size:74
Alignment explanation
Indices: 8524804--8524949 Score: 177
Period size: 75 Copynumber: 1.9 Consensus size: 74
8524794 ATTTAAAGGA
* * *
8524804 ATTTTGTTTCAATAAAAACGGCAGTGTTCTATAGGATATATTAGTGGCGTTTTGGGTAAAACACC
1 ATTTTGTTTCAATAAAAACGGCA-CGTTCTATAAGATATATTACTGGCGTTTTGGGTAAAACACC
8524869 GCAAAATGTG
65 GCAAAATGTG
* * * * *
8524879 ATTTTGTTTCAATAAAAACGTTGC-CGTTCTGTAAGATTTCTTACTGGCGTTTTTGGTAAAACGC
1 ATTTTGTTTCAATAAAAACG--GCACGTTCTATAAGATATATTACTGGCGTTTTGGGTAAAACAC
*
8524943 CGGAAAA
64 CGCAAAA
8524950 GATCATCCTT
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
75 58 0.97
77 2 0.03
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (74 bp):
ATTTTGTTTCAATAAAAACGGCACGTTCTATAAGATATATTACTGGCGTTTTGGGTAAAACACCG
CAAAATGTG
Found at i:8525133 original size:114 final size:116
Alignment explanation
Indices: 8524889--8525134 Score: 259
Period size: 115 Copynumber: 2.1 Consensus size: 116
8524879 ATTTTGTTTC
* *
8524889 AATAAAAACGTTGCCGTTCTGTAAGATTTCTTACTGGCGTTTTTGGTAAAACGCCGGAAAAGATC
1 AATAAAAACGTTGCCGTGCTGTAAGATTTATTACTGGCGTTTTTGGTAAAACGCCGGAAAAGATC
* * * * * * * *
8524954 ATCCTTTAGCGGCGCTATGTCAAAAACGCCGCAAAAATGTGATTCTGTTTT
66 AGCCTTTAACGGCGCTACGTCAAAAACGCCACAAAAATGTCAATCGGTTAT
* * * *
8525005 AAT-AAAACGCTGCCGTGGTGTAGGATTTATTAGTGGCGTTTTCT-GTAAAACGCC-GAAAACG-
1 AATAAAAACGTTGCCGTGCTGTAAGATTTATTACTGGCGTTTT-TGGTAAAACGCCGGAAAA-GA
* *** * *
8525066 TCAGCCTTTAACGGCGCTGCGTTGGAAACGCCAC-AAAATTTCAATGGGTTAT
64 TCAGCCTTTAACGGCGCTACGTCAAAAACGCCACAAAAATGTCAATCGGTTAT
8525118 AATAAAAACGTTGCCGT
1 AATAAAAACGTTGCCGT
8525135 TTTGTTGGAT
Statistics
Matches: 106, Mismatches: 21, Indels: 8
0.79 0.16 0.06
Matches are distributed among these distances:
113 15 0.14
114 43 0.41
115 44 0.42
116 4 0.04
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (116 bp):
AATAAAAACGTTGCCGTGCTGTAAGATTTATTACTGGCGTTTTTGGTAAAACGCCGGAAAAGATC
AGCCTTTAACGGCGCTACGTCAAAAACGCCACAAAAATGTCAATCGGTTAT
Found at i:8525145 original size:114 final size:116
Alignment explanation
Indices: 8524889--8525146 Score: 265
Period size: 114 Copynumber: 2.2 Consensus size: 116
8524879 ATTTTGTTTC
* *
8524889 AATAAAAACGTTGCCGTTCTGTAAGATTTCTTACTGGCGTTTTTGGTAAAACGCCGGAAAAGATC
1 AATAAAAACGTTGCCGTTCTGTAGGATTTATTACTGGCGTTTTTGGTAAAACGCCGGAAAAGATC
* * * * * * * *
8524954 ATCCTTTAGCGGCGCTATGTCAAAAACGCCGCAAAAATGTGATTCTGTTTT
66 AGCCTTTAACGGCGCTACGTCAAAAACGCCACAAAAATGTCAATCGGTTAT
* ** *
8525005 AAT-AAAACGCTGCCGTGGTGTAGGATTTATTAGTGGCGTTTTCT-GTAAAACGCC-GAAAACG-
1 AATAAAAACGTTGCCGTTCTGTAGGATTTATTACTGGCGTTTT-TGGTAAAACGCCGGAAAA-GA
* *** * *
8525066 TCAGCCTTTAACGGCGCTGCGTTGGAAACGCCAC-AAAATTTCAATGGGTTAT
64 TCAGCCTTTAACGGCGCTACGTCAAAAACGCCACAAAAATGTCAATCGGTTAT
* *
8525118 AATAAAAACGTTGCCGTTTTGTTGGATTT
1 AATAAAAACGTTGCCGTTCTGTAGGATTT
8525147 TGTGTTGACC
Statistics
Matches: 115, Mismatches: 24, Indels: 8
0.78 0.16 0.05
Matches are distributed among these distances:
113 15 0.13
114 52 0.45
115 44 0.38
116 4 0.03
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (116 bp):
AATAAAAACGTTGCCGTTCTGTAGGATTTATTACTGGCGTTTTTGGTAAAACGCCGGAAAAGATC
AGCCTTTAACGGCGCTACGTCAAAAACGCCACAAAAATGTCAATCGGTTAT
Found at i:8525385 original size:189 final size:190
Alignment explanation
Indices: 8525169--8525521 Score: 573
Period size: 189 Copynumber: 1.9 Consensus size: 190
8525159 AACGAAATCA
* * *
8525169 TTTTTATATTTTTAGTGGCGTTTTTGTTAAAACGCCGGAAAAGATCTTGCTTTAGCGGCGCTTAT
1 TTTTTATATATTTAGTGGCGTTTTTGTTAAAACGCCGCAAAAGATCTTACTTTAGCGGCGCTTAT
* * *
8525234 CTTAAAACGCCGCAAGAATGTTATTTTGTGTTTACCAAAACGTGACCGTTTTTTTATGTATTTAG
66 CTTAAAACGCCACAAAAATGTTATTATGTGTTTACCAAAACGTGACCGTTTTTTTATGTATTTAG
8525299 TGGCGTTTTTATTAAAACGCCGCAAAA-ATGTTATTTTGTGTTTACCAAAACGTGACCGT
131 TGGCGTTTTTATTAAAACGCCGCAAAATATGTTATTTTGTGTTTACCAAAACGTGACCGT
* * * *
8525358 TTTTTATGTATTTAGTGGCGTTTTTGTTAAAACGCCGCAAAAGATGTTACTTTAGCGGTGCTTCT
1 TTTTTATATATTTAGTGGCGTTTTTGTTAAAACGCCGCAAAAGATCTTACTTTAGCGGCGCTTAT
* *
8525423 TTTAAAATGCCACAAAAATGTTATTATGTGTTTACCAAAACGTGACCGTTTTTTTATGTATTTAG
66 CTTAAAACGCCACAAAAATGTTATTATGTGTTTACCAAAACGTGACCGTTTTTTTATGTATTTAG
* *
8525488 TGGCGTTTTTGTTAAAATGCCGCAAAATATGTTA
131 TGGCGTTTTTATTAAAACGCCGCAAAATATGTTA
8525522 CTTTAGCGGC
Statistics
Matches: 149, Mismatches: 14, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
189 143 0.96
190 6 0.04
ACGTcount: A:0.27, C:0.14, G:0.19, T:0.41
Consensus pattern (190 bp):
TTTTTATATATTTAGTGGCGTTTTTGTTAAAACGCCGCAAAAGATCTTACTTTAGCGGCGCTTAT
CTTAAAACGCCACAAAAATGTTATTATGTGTTTACCAAAACGTGACCGTTTTTTTATGTATTTAG
TGGCGTTTTTATTAAAACGCCGCAAAATATGTTATTTTGTGTTTACCAAAACGTGACCGT
Found at i:8525398 original size:74 final size:75
Alignment explanation
Indices: 8525235--8525406 Score: 310
Period size: 75 Copynumber: 2.3 Consensus size: 75
8525225 GGCGCTTATC
*
8525235 TTAAAACGCCGCAAGAATGTTATTTTGTGTTTACCAAAACGTGACCGTTTTTTTATGTATTTAGT
1 TTAAAACGCCGCAAAAATGTTATTTTGTGTTTACCAAAACGTGACCGTTTTTTTATGTATTTAGT
8525300 GGCGTTTTTA
66 GGCGTTTTTA
8525310 TTAAAACGCCGCAAAAATGTTATTTTGTGTTTACCAAAACGTGACCG-TTTTTTATGTATTTAGT
1 TTAAAACGCCGCAAAAATGTTATTTTGTGTTTACCAAAACGTGACCGTTTTTTTATGTATTTAGT
*
8525374 GGCGTTTTTG
66 GGCGTTTTTA
8525384 TTAAAACGCCGCAAAAGATGTTA
1 TTAAAACGCCGCAAAA-ATGTTA
8525407 CTTTAGCGGT
Statistics
Matches: 94, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
74 42 0.45
75 52 0.55
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.40
Consensus pattern (75 bp):
TTAAAACGCCGCAAAAATGTTATTTTGTGTTTACCAAAACGTGACCGTTTTTTTATGTATTTAGT
GGCGTTTTTA
Found at i:8525525 original size:115 final size:114
Alignment explanation
Indices: 8525310--8525626 Score: 544
Period size: 115 Copynumber: 2.8 Consensus size: 114
8525300 GGCGTTTTTA
8525310 TTAAAACGCCGCAAAAATGTTATTTTGTGTTTACCAAAACGTGACCGTTTTTTATGTATTTAGTG
1 TTAAAACGCCGCAAAAATGTTATTTTGTGTTTACCAAAACGTGACCGTTTTTTATGTATTTAGTG
* * *
8525375 GCGTTTTTGTTAAAACGCCGCAAAAGATGTTACTTTAGCGGTGCTTCTT
66 GCGTTTTTGTTAAAACGCCGCAAAAGATGTTACTTTAGCGGCGCTTATC
* * *
8525424 TTAAAATGCCACAAAAATGTTATTATGTGTTTACCAAAACGTGACCGTTTTTTTATGTATTTAGT
1 TTAAAACGCCGCAAAAATGTTATTTTGTGTTTACCAAAACGTGACCG-TTTTTTATGTATTTAGT
* *
8525489 GGCGTTTTTGTTAAAATGCCGCAAAATATGTTACTTTAGCGGCGCTTATC
65 GGCGTTTTTGTTAAAACGCCGCAAAAGATGTTACTTTAGCGGCGCTTATC
8525539 TTAAAACGCCGCAAAAAATGTTATTTTGTGTTTACCAAAACGTGACCGTTTTTTATGTATTTAGT
1 TTAAAACGCCGC-AAAAATGTTATTTTGTGTTTACCAAAACGTGACCGTTTTTTATGTATTTAGT
8525604 GGCGTTTTTGTTAAAACGCCGCA
65 GGCGTTTTTGTTAAAACGCCGCA
8525627 GGTGTTTATT
Statistics
Matches: 189, Mismatches: 12, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
114 44 0.23
115 111 0.59
116 34 0.18
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.38
Consensus pattern (114 bp):
TTAAAACGCCGCAAAAATGTTATTTTGTGTTTACCAAAACGTGACCGTTTTTTATGTATTTAGTG
GCGTTTTTGTTAAAACGCCGCAAAAGATGTTACTTTAGCGGCGCTTATC
Found at i:8528309 original size:21 final size:21
Alignment explanation
Indices: 8528283--8528357 Score: 55
Period size: 21 Copynumber: 3.6 Consensus size: 21
8528273 CTACAACTTA
8528283 AAGCAGAGGCAGAAGCGAGGG
1 AAGCAGAGGCAGAAGCGAGGG
* * *
8528304 AAGCAGCGACTA-CAGCGAGGG
1 AAGCAGAGGC-AGAAGCGAGGG
* * * * *
8528325 AAGCGGAGGCTGTAGCAAGAG
1 AAGCAGAGGCAGAAGCGAGGG
8528346 AAGCAGA-GCAGA
1 AAGCAGAGGCAGA
8528358 GCAAAAAGTA
Statistics
Matches: 39, Mismatches: 13, Indels: 5
0.68 0.23 0.09
Matches are distributed among these distances:
20 3 0.08
21 35 0.90
22 1 0.03
ACGTcount: A:0.37, C:0.17, G:0.41, T:0.04
Consensus pattern (21 bp):
AAGCAGAGGCAGAAGCGAGGG
Found at i:8528596 original size:14 final size:14
Alignment explanation
Indices: 8528577--8528610 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
8528567 ATTGCTATTG
8528577 GTTGCTTTTGAAAT
1 GTTGCTTTTGAAAT
8528591 GTTGCTTTTGAAAT
1 GTTGCTTTTGAAAT
*
8528605 TTTGCT
1 GTTGCT
8528611 ACAGGAGGGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.18, C:0.09, G:0.21, T:0.53
Consensus pattern (14 bp):
GTTGCTTTTGAAAT
Found at i:8528785 original size:42 final size:42
Alignment explanation
Indices: 8528678--8528967 Score: 397
Period size: 42 Copynumber: 7.0 Consensus size: 42
8528668 TTTTGTATAA
* * * * **
8528678 AAGCGCCACTAAAGAACATGTTCTTTTGCGGCG--TTTGTAA
1 AAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCT
** * * *
8528718 AAATGCCACTAAAGAACATGTTCTTTAGCAGCGTTTTTTTCT
1 AAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCT
8528760 AAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCT
1 AAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCT
* *
8528802 AAGCGCCGCTAAAGAACATGGTCTTTAGTGGCATTTTTTTAC-
1 AAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTT-CT
* *
8528844 AAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCT
1 AAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCT
*
8528886 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCT
1 AAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCT
*
8528928 AAGCGCCGCTAAAGAACATGGTCTTTAACGGCGTTTTTTT
1 AAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTT
8528968 TTGTAAACGC
Statistics
Matches: 224, Mismatches: 22, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
40 29 0.13
41 1 0.00
42 193 0.86
43 1 0.00
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.34
Consensus pattern (42 bp):
AAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCT
Found at i:8528965 original size:126 final size:126
Alignment explanation
Indices: 8528678--8528967 Score: 458
Period size: 126 Copynumber: 2.3 Consensus size: 126
8528668 TTTTGTATAA
* * * * *
8528678 AAGCGCCACTAAAGAACATGTTCTTTTGCGGCG--TTTGTAAAAATGCCACTAAAGAACATGTTC
1 AAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTAAAAACGCCACTAAAGAACATGTTC
*
8528741 TTTAGCAGCGTTTTTTTCTAAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCT
66 TTTAGCAGCGTTTTTTTCTAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCT
* * * *
8528802 AAGCGCCGCTAAAGAACATGGTCTTTAGTGGCATTTTTTTACAAACGCCGCTAAAGAACATGTTC
1 AAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTAAAAACGCCACTAAAGAACATGTTC
*
8528867 TTTAGCGGCGTTTTTTTCTAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCT
66 TTTAGCAGCGTTTTTTTCTAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCT
*
8528928 AAGCGCCGCTAAAGAACATGGTCTTTAACGGCGTTTTTTT
1 AAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTT
8528968 TTGTAAACGC
Statistics
Matches: 150, Mismatches: 14, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
124 28 0.19
126 122 0.81
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.34
Consensus pattern (126 bp):
AAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTAAAAACGCCACTAAAGAACATGTTC
TTTAGCAGCGTTTTTTTCTAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCT
Found at i:8529160 original size:26 final size:26
Alignment explanation
Indices: 8529124--8529179 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
8529114 CGTGATGGAA
8529124 TTGGTATACCATATTCCCAAGTACCT
1 TTGGTATACCATATTCCCAAGTACCT
8529150 TTGGTATACCATATTCCCAAGTACCT
1 TTGGTATACCATATTCCCAAGTACCT
8529176 TTGG
1 TTGG
8529180 GTGCTGGAAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.36
Consensus pattern (26 bp):
TTGGTATACCATATTCCCAAGTACCT
Found at i:8530899 original size:12 final size:12
Alignment explanation
Indices: 8530882--8530906 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8530872 GTTGAGTAGT
8530882 AAAAGAAGAAGA
1 AAAAGAAGAAGA
8530894 AAAAGAAGAAGA
1 AAAAGAAGAAGA
8530906 A
1 A
8530907 GTGGCAGAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (12 bp):
AAAAGAAGAAGA
Found at i:8532035 original size:16 final size:16
Alignment explanation
Indices: 8532009--8532060 Score: 54
Period size: 16 Copynumber: 3.4 Consensus size: 16
8531999 AAAAAATATG
* *
8532009 AAAACATAAATCAACA
1 AAAAAATAAATAAACA
*
8532025 AACAAATAAATAAACA
1 AAAAAATAAATAAACA
*
8532041 AAAAAAT--ATAAAGA
1 AAAAAATAAATAAACA
8532055 AAAAAA
1 AAAAAA
8532061 GCTGCATAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
14 12 0.39
16 19 0.61
ACGTcount: A:0.77, C:0.10, G:0.02, T:0.12
Consensus pattern (16 bp):
AAAAAATAAATAAACA
Found at i:8532239 original size:20 final size:20
Alignment explanation
Indices: 8532195--8532240 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
8532185 TAGAAAGTAT
*
8532195 AATATATATATACGTACATA
1 AATATATATATAAGTACATA
*
8532215 TATATATATATAAGTTA-ATA
1 AATATATATATAAG-TACATA
8532235 AATATA
1 AATATA
8532241 AATCATAAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
20 20 0.91
21 2 0.09
ACGTcount: A:0.52, C:0.04, G:0.04, T:0.39
Consensus pattern (20 bp):
AATATATATATAAGTACATA
Found at i:8532300 original size:20 final size:20
Alignment explanation
Indices: 8532272--8532320 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
8532262 AAGCATATAT
*
8532272 ATATATATAGAAATTATAAA
1 ATATATATAGAAAGTATAAA
* *
8532292 ATATGTATAGAAAGTATAAT
1 ATATATATAGAAAGTATAAA
8532312 ATATATATA
1 ATATATATA
8532321 TATAAAAGGT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.55, C:0.00, G:0.08, T:0.37
Consensus pattern (20 bp):
ATATATATAGAAAGTATAAA
Found at i:8532357 original size:24 final size:25
Alignment explanation
Indices: 8532307--8532360 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 25
8532297 TATAGAAAGT
* *
8532307 ATAATATATATATATATAAAAGGTA
1 ATAATATATATAAATATAAAAGATA
8532332 ATAA-ATATATAAATCATAAAA-ATA
1 ATAATATATATAAAT-ATAAAAGATA
8532356 ATAAT
1 ATAAT
8532361 TACATATATA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
24 15 0.60
25 10 0.40
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33
Consensus pattern (25 bp):
ATAATATATATAAATATAAAAGATA
Found at i:8533438 original size:14 final size:15
Alignment explanation
Indices: 8533406--8533441 Score: 58
Period size: 14 Copynumber: 2.5 Consensus size: 15
8533396 GTTTCTTCAT
8533406 TTGT-TTTGGGCCAC
1 TTGTATTTGGGCCAC
8533420 TTGTATTTGGGCCAC
1 TTGTATTTGGGCCAC
8533435 -TGTATTT
1 TTGTATTT
8533442 TAGTTTATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 11 0.52
15 10 0.48
ACGTcount: A:0.11, C:0.17, G:0.25, T:0.47
Consensus pattern (15 bp):
TTGTATTTGGGCCAC
Found at i:8533926 original size:43 final size:44
Alignment explanation
Indices: 8533721--8533947 Score: 173
Period size: 44 Copynumber: 5.3 Consensus size: 44
8533711 GATCTGCTTT
** * * * *
8533721 CTGCAACTTCAGAAAGATAAGATCT-GTGGTTTTAATCCGCTTCA
1 CTGCAACTTCAGGGAGATAAGAT-TATTGGCTTTAATCTGCTCCA
* * * *
8533765 TTACAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCA
1 CTGCAACTTCAGGGAGATAAGATTATTGGCTTTAATCTGCTCCA
* * * *
8533809 CTGCAACTTCAGGGAGATAAGACTAGAT-GC---GATCTGCT-CT
1 CTGCAACTTCAGGGAGATAAGATTA-TTGGCTTTAATCTGCTCCA
** * ** * *
8533849 CTGCAACTTCAAAGAGATAAGATCT-GTGTTTTTAATCCGCT-CG
1 CTGCAACTTCAGGGAGATAAGAT-TATTGGCTTTAATCTGCTCCA
*
8533892 CTGCAACTTCAGGGAGATAGGATTATTGGCTTTAATCTGCTCCA
1 CTGCAACTTCAGGGAGATAAGATTATTGGCTTTAATCTGCTCCA
8533936 CTGCAACTTCAG
1 CTGCAACTTCAG
8533948 ATAAAATCCA
Statistics
Matches: 139, Mismatches: 35, Indels: 18
0.72 0.18 0.09
Matches are distributed among these distances:
39 1 0.01
40 21 0.15
41 8 0.06
42 1 0.01
43 40 0.29
44 68 0.49
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (44 bp):
CTGCAACTTCAGGGAGATAAGATTATTGGCTTTAATCTGCTCCA
Found at i:8533993 original size:127 final size:127
Alignment explanation
Indices: 8533721--8533994 Score: 336
Period size: 127 Copynumber: 2.1 Consensus size: 127
8533711 GATCTGCTTT
* *
8533721 CTGCAACTTCAGAAAGATAAGATCTGTGGTTTTAATCCGCTTCATTACAACTTCAGGGAGATAGG
1 CTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTTCACTACAACTTCAGGGAGATAGG
* * ** * *
8533786 ATTATCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCT
66 ATTATCGGCTTTAATCTGCTCCACTGCAACTTCA-GGAGAAAAGACAAGATGAAATCCGCTCA
* * * *
8533849 CTGCAACTTCAAAGAGATAAGATCTGTGTTTTTAATCCGC-TCGCTGCAACTTCAGGGAGATAGG
1 CTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTTCACTACAACTTCAGGGAGATAGG
* * ** * *
8533913 ATTATTGGCTTTAATCTGCTCCACTGCAACTTCA-GATAAAATCCAAGGTTTAAATCCGCTCCA
66 ATTATCGGCTTTAATCTGCTCCACTGCAACTTCAGGAGAAAAGACAA-GATGAAATCCGCT-CA
*
8533976 CTGCAACTTCAGGGAGATA
1 CTGCAACTTCAGAGAGATA
8533995 GGATTGGTTT
Statistics
Matches: 124, Mismatches: 20, Indels: 5
0.83 0.13 0.03
Matches are distributed among these distances:
125 7 0.06
126 8 0.06
127 72 0.58
128 37 0.30
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (127 bp):
CTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTTCACTACAACTTCAGGGAGATAGG
ATTATCGGCTTTAATCTGCTCCACTGCAACTTCAGGAGAAAAGACAAGATGAAATCCGCTCA
Found at i:8534012 original size:44 final size:43
Alignment explanation
Indices: 8533752--8534009 Score: 124
Period size: 44 Copynumber: 6.1 Consensus size: 43
8533742 ATCTGTGGTT
* * * * *
8533752 TTAATCCGCTTCATTACAACTTCAGGGAGATAGGATT-ATCGGC
1 TTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGT-TGC
* * * * *
8533795 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGC
1 -TTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTGC
* * * ** * *
8533839 --GATCTGCT-CTCTGCAACTTCAAAGAGATAAGATCTGTGTT-T
1 TTAATCCGCTCCACTGCAACTTCAGGGAGATAGGAT-TG-GTTGC
* *
8533880 TTAATCCGCT-CGCTGCAACTTCAGGGAGATAGGATT-ATTGGC
1 TTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTT-GC
* ** * ** *
8533922 TTTAATCTGCTCCACTGCAACTTCAGATA-AAATCCA-AGGTT--
1 -TTAATCCGCTCCACTGCAACTTCAGGGAGATA-GGATTGGTTGC
* *
8533963 TAAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTC
1 TTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTGC
8534006 TTAA
1 TTAA
8534010 ATCTGCTTCC
Statistics
Matches: 156, Mismatches: 43, Indels: 31
0.68 0.19 0.13
Matches are distributed among these distances:
40 48 0.31
41 14 0.09
42 3 0.02
43 41 0.26
44 50 0.32
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (43 bp):
TTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTGC
Found at i:8534171 original size:132 final size:132
Alignment explanation
Indices: 8534005--8535059 Score: 1786
Period size: 132 Copynumber: 8.0 Consensus size: 132
8533995 GGATTGGTTT
* *
8534005 CTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTCGATCTGCTCTACTACTG
1 CTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTG
* * * *
8534070 CTTAGGGAGATAAGATCTACAATATTCAACCTACTCTGCTGGTACTCAGGGAGACAAGGCTTGGT
66 CTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGT
8534135 GG
131 GG
* * *
8534137 CTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGACGTCTTTGATCTACTCCACTACTG
1 CTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTG
*
8534202 CTTAAGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGT
66 CTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGT
8534267 GG
131 GG
* *
8534269 CTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTG
1 CTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTG
* *
8534334 CTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTACTCAGGGAGAAAAGGCTTGGT
66 CTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGT
8534399 GG
131 GG
* * *
8534401 CTTAAATCTGCTTCCCACTATCTTGGAAAGATAAAATTTGCCGTCTTCGATCTGCTCTACTACTA
1 CTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTG
* *
8534466 CTTAGGGAGATAAGATCTACAATCTTCAACCTACTCAGCTGCTGCTCGGGGAGACAAGGCTTGGT
66 CTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGT
8534531 GG
131 GG
*
8534533 CTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTACCGTCTTCGATCTGCTCCACTACTG
1 CTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTG
* *
8534598 CTTAGGGAGATAAGATCTACAATCTTTAACCTACTCCGCTGCTGCTCAGGGAGAAAAGGCTTGGT
66 CTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGT
8534663 GG
131 GG
* * * *
8534665 CTTAAATCTGCTTCCCACTATCTTGGAAAGAGAAGATTTGCCGTCTTCGATTTGCTCTACTACTA
1 CTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTG
*
8534730 CTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTAGT
66 CTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGT
8534795 GG
131 GG
*
8534797 CTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTG
1 CTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTG
* * *
8534862 TTTAGGGAGATAAAATCTACAATCTTCAACCTACTCCACTGCTGCTCAGGGAGACAAGGCTTGGT
66 CTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGT
8534927 GG
131 GG
*
8534929 CTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCCTCTTCGATCTGCTCCACTACTG
1 CTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTG
* * * *
8534994 TTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCACTACTGCTTAGGGAGACAAGGCTTGGT
66 CTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGT
8535059 G
131 G
8535060 TTTCATCGGT
Statistics
Matches: 868, Mismatches: 55, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
132 868 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (132 bp):
CTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTG
CTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGT
GG
Found at i:8536315 original size:6 final size:6
Alignment explanation
Indices: 8536295--8536333 Score: 55
Period size: 6 Copynumber: 6.8 Consensus size: 6
8536285 TGGCCTCTCA
*
8536295 TTTTTC -TTTTC -TTTTC TTTTTC TTTTTC TTTTCC TTTTT
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTT
8536334 TTTATCACTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
5 10 0.33
6 20 0.67
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTTTC
Found at i:8542227 original size:16 final size:16
Alignment explanation
Indices: 8542201--8542252 Score: 54
Period size: 16 Copynumber: 3.4 Consensus size: 16
8542191 AAAAAATATG
* *
8542201 AAAACATAAATCAACA
1 AAAAAATAAATAAACA
*
8542217 AACAAATAAATAAACA
1 AAAAAATAAATAAACA
*
8542233 AAAAAAT--ATAAAGA
1 AAAAAATAAATAAACA
8542247 AAAAAA
1 AAAAAA
8542253 GGTGCATAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
14 12 0.39
16 19 0.61
ACGTcount: A:0.77, C:0.10, G:0.02, T:0.12
Consensus pattern (16 bp):
AAAAAATAAATAAACA
Found at i:8542567 original size:18 final size:20
Alignment explanation
Indices: 8542525--8542570 Score: 60
Period size: 18 Copynumber: 2.4 Consensus size: 20
8542515 TAGAAAGTAT
8542525 AATATATATATACGTACATA
1 AATATATATATACGTACATA
* *
8542545 TATATATATA-AGGTA-ATA
1 AATATATATATACGTACATA
8542563 AATATATA
1 AATATATA
8542571 AATCATAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 10 0.43
19 4 0.17
20 9 0.39
ACGTcount: A:0.52, C:0.04, G:0.07, T:0.37
Consensus pattern (20 bp):
AATATATATATACGTACATA
Found at i:8542570 original size:2 final size:2
Alignment explanation
Indices: 8542472--8542554 Score: 55
Period size: 2 Copynumber: 42.5 Consensus size: 2
8542462 GATTGCTTGC
* * *
8542472 AT AT AT AT AT AT AT AT AT AT AT AT AG AA AT -T AT A- AA AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * * * * *
8542512 GT AT AG AA AGT AT A- AT AT AT AT AT AC GT AC AT AT AT AT AT AT
1 AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8542554 A
1 A
8542555 AGGTAATAAA
Statistics
Matches: 62, Mismatches: 15, Indels: 8
0.73 0.18 0.09
Matches are distributed among these distances:
1 3 0.05
2 58 0.94
3 1 0.02
ACGTcount: A:0.52, C:0.02, G:0.06, T:0.40
Consensus pattern (2 bp):
AT
Found at i:8543922 original size:3 final size:3
Alignment explanation
Indices: 8543914--8543946 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
8543904 GTTTGGCATC
*
8543914 TCT TCT TCT TCT TCT TCT TCT TCT TCT TTT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
8543947 GTCAACTAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (3 bp):
TCT
Found at i:8547760 original size:44 final size:44
Alignment explanation
Indices: 8547705--8547845 Score: 187
Period size: 44 Copynumber: 3.2 Consensus size: 44
8547695 CTGCTTCACA
* * *
8547705 CAACTTCAGGGAAGTAGGATTAGCAGCTTCAGTTTCTTCCACTG
1 CAACTTCAGGGAAGTAGGATTAGTAGCTTCAGTCTCCTCCACTG
* * *
8547749 CAACTTTAGGGAAGTAGGATTAGTAGCTTCAATCTCCTCTACTG
1 CAACTTCAGGGAAGTAGGATTAGTAGCTTCAGTCTCCTCCACTG
*
8547793 CAACTTCAGGG-AGATAAGG-TTGGTAGCTTCAGTCTCCTCCACTG
1 CAACTTCAGGGAAG-T-AGGATTAGTAGCTTCAGTCTCCTCCACTG
8547837 CAACTTCAG
1 CAACTTCAG
8547846 AAAGATAAGA
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
43 2 0.02
44 80 0.94
45 3 0.04
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (44 bp):
CAACTTCAGGGAAGTAGGATTAGTAGCTTCAGTCTCCTCCACTG
Found at i:8548486 original size:50 final size:51
Alignment explanation
Indices: 8548414--8548652 Score: 198
Period size: 51 Copynumber: 4.7 Consensus size: 51
8548404 TGCATCGCCT
* * *
8548414 GGGAAGGTAAGATTCGCTGTTGTGGCCTT-AATCTTTTAAATTGCAATGAC-G
1 GGGAA-GTAAGATTCACCGTTGTGG-CTTCAATCTTTTAAACTGCAATGACAG
* * * ** * * *
8548465 GGGAAGTGAGATTCACCGTTGTGACTTCAATCTATTCCACTGCACTGCCTG
1 GGGAAGTAAGATTCACCGTTGTGGCTTCAATCTTTTAAACTGCAATGACAG
* * ** *
8548516 GGAAAGTAAGATTCACCGTTGTGGCCTCAATCTTTTAATTTGCAATGTC-G
1 GGGAAGTAAGATTCACCGTTGTGGCTTCAATCTTTTAAACTGCAATGACAG
* * * * * ** *
8548566 GGGAACTGAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACT-ACCAG
1 GGGAAGTAAGATTCACCGTTGTGGCTTCAATCTTTTAAACTGCAATGA-CAG
*
8548617 GGAAAGTAAGATTCACCGTTGTGGCTTCAATCTTTT
1 GGGAAGTAAGATTCACCGTTGTGGCTTCAATCTTTT
8548653 TTATTACAAT
Statistics
Matches: 144, Mismatches: 40, Indels: 8
0.75 0.21 0.04
Matches are distributed among these distances:
49 3 0.02
50 66 0.46
51 75 0.52
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.32
Consensus pattern (51 bp):
GGGAAGTAAGATTCACCGTTGTGGCTTCAATCTTTTAAACTGCAATGACAG
Found at i:8548495 original size:173 final size:173
Alignment explanation
Indices: 8548181--8548528 Score: 395
Period size: 173 Copynumber: 2.0 Consensus size: 173
8548171 ATCTTTTAAT
* * * *
8548181 TTGCAATATCGGGAAAGCAAGATTCGCCATTGTGGCTTTAATCTATTCCATTACATCGCCGGGGA
1 TTGCAATATCGGGAAAGCAAGATTCGCCATTGTAGCTTCAATCTATTCCACTACATCGCCGGGAA
* ** * *
8548246 GATGAGATTCGCTGTTGTAGCTTCAATCTATTTGACAACAATGTTGGGGAAGTGAGATTCGCTAT
66 GATAAGATTCGCTGTTGTAGCTTCAATCTATTTGACAACAATGACGGGGAAGTGAGATTCACCAT
*
8548311 CGTAGCTTCAATCTGTTCCACTGCACCG-CTAGGGAAA-TAAGA
131 CGTAGCTTCAATCTATTCCACTGCACCGCCT-GGGAAAGTAAGA
* * * ** *
8548353 TTGCAATGTCGGGGAAGGAAGATTTTCCATTGTAGCTTCAATCTATTCCACTGCATCGCCTGGGA
1 TTGCAATATCGGGAAAGCAAGATTCGCCATTGTAGCTTCAATCTATTCCACTACATCGCC-GGGA
* *
8548418 AGGTAAGATTCGCTGTTGTGGCCTT-AATCT-TTT-A-AATTGCAATGACGGGGAAGTGAGATTC
65 AGATAAGATTCGCTGTTGTAG-CTTCAATCTATTTGACAA---CAATGACGGGGAAGTGAGATTC
* * *
8548479 ACCGTTGT-GACTTCAATCTATTCCACTGCACTGCCTGGGAAAGTAAGA
126 ACCATCGTAG-CTTCAATCTATTCCACTGCACCGCCTGGGAAAGTAAGA
8548527 TT
1 TT
8548529 CACCGTTGTG
Statistics
Matches: 147, Mismatches: 21, Indels: 14
0.81 0.12 0.08
Matches are distributed among these distances:
170 2 0.01
171 1 0.01
172 55 0.37
173 77 0.52
174 12 0.08
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (173 bp):
TTGCAATATCGGGAAAGCAAGATTCGCCATTGTAGCTTCAATCTATTCCACTACATCGCCGGGAA
GATAAGATTCGCTGTTGTAGCTTCAATCTATTTGACAACAATGACGGGGAAGTGAGATTCACCAT
CGTAGCTTCAATCTATTCCACTGCACCGCCTGGGAAAGTAAGA
Found at i:8548527 original size:101 final size:101
Alignment explanation
Indices: 8548352--8548652 Score: 412
Period size: 101 Copynumber: 3.0 Consensus size: 101
8548342 GGGAAATAAG
** *
8548352 ATTGCAATGTCGGGGAAG-GAAGATTTTCCATTGTAGCTTCAATCTATTCCACTGCA-TCGCCTG
1 ATTGCAATGTCGGGGAAGTG-AGATTCACCGTTGTAGCTTCAATCTATTCCACTGCACT-GCCTG
* * *
8548415 GGAAGGTAAGATTCGCTGTTGTGGCCTTAATCTTTTAA
64 GGAAAGTAAGATTCACCGTTGTGGCCTTAATCTTTTAA
*
8548453 ATTGCAATGACGGGGAAGTGAGATTCACCGTTGT-GACTTCAATCTATTCCACTGCACTGCCTGG
1 ATTGCAATGTCGGGGAAGTGAGATTCACCGTTGTAG-CTTCAATCTATTCCACTGCACTGCCTGG
*
8548517 GAAAGTAAGATTCACCGTTGTGGCCTCAATCTTTTAA
65 GAAAGTAAGATTCACCGTTGTGGCCTTAATCTTTTAA
* * * * * *
8548554 TTTGCAATGTCGGGGAACTGAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACTACCAGGG
1 ATTGCAATGTCGGGGAAGTGAGATTCACCGTTGTAGCTTCAATCTATTCCACTGCACTGCCTGGG
8548619 AAAGTAAGATTCACCGTTGTGG-CTTCAATCTTTT
66 AAAGTAAGATTCACCGTTGTGGCCTT-AATCTTTT
8548653 TTATTACAAT
Statistics
Matches: 179, Mismatches: 16, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
100 3 0.02
101 173 0.97
102 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (101 bp):
ATTGCAATGTCGGGGAAGTGAGATTCACCGTTGTAGCTTCAATCTATTCCACTGCACTGCCTGGG
AAAGTAAGATTCACCGTTGTGGCCTTAATCTTTTAA
Found at i:8560594 original size:42 final size:42
Alignment explanation
Indices: 8560529--8560684 Score: 169
Period size: 42 Copynumber: 3.7 Consensus size: 42
8560519 AAATCGTACA
*
8560529 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGAAATCAATATCG
*
8560571 ATGCC-ACTGTCCCAGACAG-GGTCTTACACGAAATCAAATAT-G
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACATGAAATC-AATATCG
* * *
8560613 ATGCCGATGTCCCAGACATGGTCTTATACAT-AAATCTCAA-ATCG
1 ATGCCAACGTCCCAGACGTGGTC-T-TACATGAAA--TCAATATCG
8560657 ATGCCAACGTCCCAGACGTGGTCTTACA
1 ATGCCAACGTCCCAGACGTGGTCTTACA
8560685 CGATAACATA
Statistics
Matches: 96, Mismatches: 8, Indels: 20
0.77 0.06 0.16
Matches are distributed among these distances:
41 2 0.02
42 51 0.53
43 14 0.15
44 27 0.28
45 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGAAATCAATATCG
Found at i:8567438 original size:42 final size:43
Alignment explanation
Indices: 8567373--8567531 Score: 136
Period size: 42 Copynumber: 3.7 Consensus size: 43
8567363 AAATCGTACA
* *
8567373 ATGCCAAC-GTCCCAGAC-GTGGTCTTACATGTAATC-AATATCG
1 ATGCCAACTGTCCCAGACAG-GGTCTTACACGAAATCAAATAT-G
8567415 ATGCC-ACTGTCCCAGACAGGGTCTTACACGAAATCAAATATG
1 ATGCCAACTGTCCCAGACAGGGTCTTACACGAAATCAAATATG
* * * * *
8567457 ATGCCGA-TGTCCCAGACATGGTCTTATACATAAATCTCAAAT-CG
1 ATGCCAACTGTCCCAGACAGGGTCTTACAC-GAAA--TCAAATATG
*
8567501 ATGCCAAC-GTCCTAGAC-GTGGTCTTACACGA
1 ATGCCAACTGTCCCAGACAG-GGTCTTACACGA
8567532 TAACATATAT
Statistics
Matches: 97, Mismatches: 11, Indels: 17
0.78 0.09 0.14
Matches are distributed among these distances:
41 2 0.02
42 54 0.56
43 11 0.11
44 24 0.25
45 6 0.06
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (43 bp):
ATGCCAACTGTCCCAGACAGGGTCTTACACGAAATCAAATATG
Found at i:8572513 original size:31 final size:31
Alignment explanation
Indices: 8572477--8572542 Score: 132
Period size: 31 Copynumber: 2.1 Consensus size: 31
8572467 TGACTCATGT
8572477 ATGTTAGTTTATAATGGTAGATCATGTGTTG
1 ATGTTAGTTTATAATGGTAGATCATGTGTTG
8572508 ATGTTAGTTTATAATGGTAGATCATGTGTTG
1 ATGTTAGTTTATAATGGTAGATCATGTGTTG
8572539 ATGT
1 ATGT
8572543 CTTCTCAGAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.26, C:0.03, G:0.26, T:0.45
Consensus pattern (31 bp):
ATGTTAGTTTATAATGGTAGATCATGTGTTG
Found at i:8573154 original size:23 final size:23
Alignment explanation
Indices: 8573128--8573197 Score: 70
Period size: 23 Copynumber: 3.0 Consensus size: 23
8573118 TATGACGTAA
* *
8573128 TTTGTAAAGCTTTTGTGGCATGT
1 TTTGTAAAGCTTATGTGGCATAT
*
8573151 TTTGTAATA-CTTGTGTGGCATAT
1 TTTGTAA-AGCTTATGTGGCATAT
* * *
8573174 TCTGTAATGCCTATGTGGCATAT
1 TTTGTAAAGCTTATGTGGCATAT
8573197 T
1 T
8573198 CTATAATGCC
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
23 38 0.97
24 1 0.03
ACGTcount: A:0.20, C:0.11, G:0.23, T:0.46
Consensus pattern (23 bp):
TTTGTAAAGCTTATGTGGCATAT
Found at i:8573180 original size:46 final size:46
Alignment explanation
Indices: 8573130--8573237 Score: 135
Period size: 46 Copynumber: 2.3 Consensus size: 46
8573120 TGACGTAATT
* * * * * **
8573130 TGTAAAGCTTTTGTGGCATGTTTTGTAATACTTGTGTGGCATATTC
1 TGTAATGCCTTTGTGGCATATTCTATAATACCCGTGTGGCATATTC
* *
8573176 TGTAATGCCTATGTGGCATATTCTATAATGCCCGTGTGGCATATTC
1 TGTAATGCCTTTGTGGCATATTCTATAATACCCGTGTGGCATATTC
8573222 TGTAATGCCTTTGTGG
1 TGTAATGCCTTTGTGG
8573238 TGAAATCTGG
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 52 1.00
ACGTcount: A:0.19, C:0.15, G:0.24, T:0.42
Consensus pattern (46 bp):
TGTAATGCCTTTGTGGCATATTCTATAATACCCGTGTGGCATATTC
Found at i:8573198 original size:23 final size:23
Alignment explanation
Indices: 8573141--8573237 Score: 122
Period size: 23 Copynumber: 4.2 Consensus size: 23
8573131 GTAAAGCTTT
* * * *
8573141 TGTGGCATGTTTTGTAATACTTG
1 TGTGGCATATTCTGTAATGCCTG
*
8573164 TGTGGCATATTCTGTAATGCCTA
1 TGTGGCATATTCTGTAATGCCTG
* *
8573187 TGTGGCATATTCTATAATGCCCG
1 TGTGGCATATTCTGTAATGCCTG
*
8573210 TGTGGCATATTCTGTAATGCCTT
1 TGTGGCATATTCTGTAATGCCTG
8573233 TGTGG
1 TGTGG
8573238 TGAAATCTGG
Statistics
Matches: 63, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 63 1.00
ACGTcount: A:0.19, C:0.15, G:0.25, T:0.41
Consensus pattern (23 bp):
TGTGGCATATTCTGTAATGCCTG
Found at i:8592813 original size:29 final size:28
Alignment explanation
Indices: 8592774--8592829 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 28
8592764 TATGTGATAT
8592774 AGTATTATATAATGAAATA-TATTTTATA
1 AGTATTATATAAT-AAATATTATTTTATA
*
8592802 AGTATTAATATAATAACTATTATTTTAT
1 AGTATT-ATATAATAAATATTATTTTAT
8592830 TATAGATTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 10 0.40
29 15 0.60
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.48
Consensus pattern (28 bp):
AGTATTATATAATAAATATTATTTTATA
Found at i:8593087 original size:27 final size:27
Alignment explanation
Indices: 8593057--8593124 Score: 118
Period size: 27 Copynumber: 2.5 Consensus size: 27
8593047 AGGAGGGTAA
*
8593057 CCCATAGGCGGCACCGATGGTGCCATT
1 CCCATGGGCGGCACCGATGGTGCCATT
*
8593084 CCCATGGGCGGCACCGATGGTGCCTTT
1 CCCATGGGCGGCACCGATGGTGCCATT
8593111 CCCATGGGCGGCAC
1 CCCATGGGCGGCAC
8593125 TACCCATATA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.15, C:0.35, G:0.32, T:0.18
Consensus pattern (27 bp):
CCCATGGGCGGCACCGATGGTGCCATT
Found at i:8593205 original size:10 final size:10
Alignment explanation
Indices: 8593177--8593325 Score: 78
Period size: 10 Copynumber: 15.1 Consensus size: 10
8593167 GAAGGAGAGG
8593177 GAAAGAAGAAGA
1 GAAA-AAGAA-A
*
8593189 GAGAAAGAAA
1 GAAAAAGAAA
8593199 GAAAAAGAAA
1 GAAAAAGAAA
*
8593209 GAAAAGGAAA
1 GAAAAAGAAA
* * *
8593219 GGAGAGGAAA
1 GAAAAAGAAA
8593229 G--AAAGAAA
1 GAAAAAGAAA
*
8593237 -AAGAAGGAAA
1 GAA-AAAGAAA
*
8593247 GAAAAGGAAA
1 GAAAAAGAAA
* *
8593257 GGAGAAG-AA
1 GAAAAAGAAA
8593266 GAAAAAAGAAA
1 G-AAAAAGAAA
*
8593277 GAAAAAGAAG
1 GAAAAAGAAA
*
8593287 GAAAGA-AAA
1 GAAAAAGAAA
* *
8593296 GGAAAGGAGAA
1 GAAAAAGA-AA
*
8593307 GAGAAA-AAA
1 GAAAAAGAAA
8593316 -AAAAAGAAA
1 GAAAAAGAAA
8593325 G
1 G
8593326 GAGGAGAAGA
Statistics
Matches: 104, Mismatches: 23, Indels: 22
0.70 0.15 0.15
Matches are distributed among these distances:
8 9 0.09
9 13 0.12
10 64 0.62
11 15 0.14
12 3 0.03
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (10 bp):
GAAAAAGAAA
Found at i:8593232 original size:38 final size:38
Alignment explanation
Indices: 8593176--8593325 Score: 146
Period size: 38 Copynumber: 3.9 Consensus size: 38
8593166 AGAAGGAGAG
* * *
8593176 GGAAAGAAGAAGAGAGAAAGAAAGAAAAAGAAAGAAAA
1 GGAAAGGAGAGGAAAGAAAGAAAGAAAAAGAAAGAAAA
*
8593214 GGAAAGGAGAGGAAAGAAAGAAA-AAGAAGGAAAGAAAA
1 GGAAAGGAGAGGAAAGAAAGAAAGAA-AAAGAAAGAAAA
*
8593252 GGAAAGGAGAAGAAGAAA-AAAGAAAGAAAAAG-AAGGAAA
1 GGAAAGGAG-AG--GAAAGAAAGAAAGAAAAAGAAAGAAAA
* * *
8593291 GAAAAGGAAAGGAGAAGAGAA-AAAAAAAAAGAAAG
1 GGAAAGGAGAGGA-AAGA-AAGAAAGAAAAAGAAAG
8593326 GAGGAGAAGA
Statistics
Matches: 94, Mismatches: 9, Indels: 17
0.78 0.08 0.14
Matches are distributed among these distances:
36 2 0.02
37 4 0.04
38 52 0.55
39 20 0.21
40 10 0.11
41 6 0.06
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (38 bp):
GGAAAGGAGAGGAAAGAAAGAAAGAAAAAGAAAGAAAA
Found at i:8593240 original size:44 final size:44
Alignment explanation
Indices: 8593168--8593325 Score: 140
Period size: 44 Copynumber: 3.6 Consensus size: 44
8593158 GGGGGAAGAG
8593168 AAGGAGAGGGAAAGAAGAAGAGAGAAAGAAAGAAAAAGAAAGAAAAGGA
1 AAGGAGA-GGAAAG-A-AAGA-AGAAAGAAAG-AAAAGAAAGAAAAGGA
8593217 AAGGAGAGGAAAGAAAGAA-AAAG-AAG----GAAAGAAAAGGA
1 AAGGAGAGGAAAGAAAGAAGAAAGAAAGAAAAGAAAGAAAAGGA
* *
8593255 AAGGAGAAG-AAGAAAAAAGAAAGAAA-AAGAAGGAAAGAAAAGGA
1 AAGGAGAGGAAAGAAAGAAGAAAGAAAGAA-AA-GAAAGAAAAGGA
8593299 AAGGAGAAGAGAAA-AAA-AA-AAAGAAAG
1 AAGGAG-AG-GAAAGAAAGAAGAAAGAAAG
8593326 GAGGAGAAGA
Statistics
Matches: 94, Mismatches: 3, Indels: 28
0.75 0.02 0.22
Matches are distributed among these distances:
37 8 0.09
38 24 0.26
39 2 0.02
43 3 0.03
44 29 0.31
45 4 0.04
46 8 0.09
47 3 0.03
48 6 0.06
49 7 0.07
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (44 bp):
AAGGAGAGGAAAGAAAGAAGAAAGAAAGAAAAGAAAGAAAAGGA
Found at i:8593321 original size:20 final size:20
Alignment explanation
Indices: 8593254--8593321 Score: 57
Period size: 21 Copynumber: 3.2 Consensus size: 20
8593244 AAAGAAAAGG
8593254 AAAGGAGAAGAAGAAAAAAGAA
1 AAAGGAGAAG-AGAAAAAA-AA
** *
8593276 AGAAAAAGAAG-GAAAGAAAAGG
1 A-AAGGAGAAGAGAAA-AAAA-A
8593298 AAAGGAGAAGAGAAAAAAAA
1 AAAGGAGAAGAGAAAAAAAA
8593318 AAAG
1 AAAG
8593322 AAAGGAGGAG
Statistics
Matches: 36, Mismatches: 6, Indels: 10
0.69 0.12 0.19
Matches are distributed among these distances:
20 4 0.11
21 16 0.44
22 9 0.25
23 7 0.19
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (20 bp):
AAAGGAGAAGAGAAAAAAAA
Found at i:8593325 original size:24 final size:24
Alignment explanation
Indices: 8593248--8593328 Score: 73
Period size: 24 Copynumber: 3.5 Consensus size: 24
8593238 AGAAGGAAAG
*
8593248 AAAAGGAAAGGAGAAGA-AGAAAAA
1 AAAAAGAAAGGAGAAGAGA-AAAAA
* * *
8593272 AGAAAGAAA-AAGAAG-G--AAAG
1 AAAAAGAAAGGAGAAGAGAAAAAA
*
8593292 AAAAGGAAAGGAGAAGAGAAAAAA
1 AAAAAGAAAGGAGAAGAGAAAAAA
8593316 AAAAAGAAAGGAG
1 AAAAAGAAAGGAG
8593329 GAGAAGAGGG
Statistics
Matches: 43, Mismatches: 9, Indels: 10
0.69 0.15 0.16
Matches are distributed among these distances:
20 10 0.23
21 5 0.12
22 1 0.02
23 5 0.12
24 22 0.51
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (24 bp):
AAAAAGAAAGGAGAAGAGAAAAAA
Found at i:8593325 original size:68 final size:67
Alignment explanation
Indices: 8593200--8593335 Score: 159
Period size: 68 Copynumber: 2.0 Consensus size: 67
8593190 AGAAAGAAAG
* * * * *
8593200 AAAAAGAAAGAAAAGGAAAGGAGAGGAAAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAAGA
1 AAAAAGAAAGAAAAAGAAAGGAAAGAAAAGAAAGAAAAAGAA-GAAAAAAAAAGAAAGGAGAAGA
8593265 AGA
65 AGA
* *
8593268 AAAAAGAAAGAAAAAG-AAGGAAAGAAAAGGAAAGGAGAAGAGAA-AAAAAAAAAGAAAGGAGGA
1 AAAAAGAAAGAAAAAGAAAGGAAAGAAAA-GAAA-GA-AAAAGAAGAAAAAAAAAGAAAGGAGAA
8593331 GAAGA
63 GAAGA
8593336 GGGAAAGAAA
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
67 10 0.17
68 40 0.69
69 2 0.03
70 6 0.10
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (67 bp):
AAAAAGAAAGAAAAAGAAAGGAAAGAAAAGAAAGAAAAAGAAGAAAAAAAAAGAAAGGAGAAGAA
GA
Found at i:8594436 original size:318 final size:319
Alignment explanation
Indices: 8593683--8601454 Score: 12722
Period size: 318 Copynumber: 24.4 Consensus size: 319
8593673 GTATATTTAA
*
8593683 TAAATTTCAAACATAATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
1 TAAATTTCAAACATAATGCATTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
*
8593748 AAAGTAATAAAATACGGAGAAAAAAATACGAACAAATGGCCGAAGT-AAGAGTGTTTTACTAACT
66 AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTGTTTTACTAACT
* *
8593812 TTTTTAAAAATTCAGAAATAATGAATACAAATATTTCTAACAAAATGTACTGAAATAATATAAAA
131 TTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATGTACTGAAATAATATAAAA
* * * *
8593877 TAATAAACTATGAAAATAATATATTTTTATTGAAAGTAATAAAATTCGTGAAAATAATACGAGCA
196 TAATAAAATACGAAAATAATATATTTTT-TTGGAAGTAATAAAATTCGGGAAAATAATACGAGCA
* * *
8593942 AAGGGCAAGAATAA-GG-TTTTTTTTACACTAAATTAATTTAGAAAACACACTAAATCCC
260 AAGGGTAGGAATAAGGGTTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCC
* *
8594000 TAAATTTCAAACATAATACATTGAAATAATGTAAAATTATAAAATTAGAAATTATGATTTTTTTT
1 TAAATTTCAAACATAATGCATTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
*
8594065 AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTGTTTTACTAAAT
66 AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTGTTTTACTAACT
* * *
8594130 TTTTTAAAAATTTAGAAATAATTAATACAAAAATTTCAAACAAAATTTACTGAAATAATATAAAA
131 TTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATGTACTGAAATAATATAAAA
*
8594195 TAATAAAATACGAAAATAATATA-TTTTTTGGAAGTAATAAAATTTGGGAAAATAATACGAGCAA
196 TAATAAAATACGAAAATAATATATTTTTTTGGAAGTAATAAAATTCGGGAAAATAATACGAGCAA
* * *
8594259 ATGGTAGGAAGAAGGGTTTTTTTTTTACACTAAATTCATTTAAAAAACACACTAAATCCC
261 AGGGTAGGAATAAGGG-TTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCC
*
8594319 TAAATTTCAAACATAATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
1 TAAATTTCAAACATAATGCATTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
*
8594384 AAAGTAATAAAATGCGGAGAAAAAAATTCGAACAAATGGCCGAAGT-AAGAGTGTTTTACTAACT
66 AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTGTTTTACTAAC-
8594448 TTTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATGTACTGAAATAATATAAA
130 TTTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATGTACTGAAATAATATAAA
* *
8594513 ATAATAAAGTACGAAAATAATATATTTTTATTGAAAGTAATAAAATTC-GGAAAATTAATACGAG
195 ATAATAAAATACGAAAATAATATATTTTT-TTGGAAGTAATAAAATTCGGGAAAA-TAATACGAG
* * * *
8594577 CAAAGGGCAAGAGTAAGGG-TTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCA
258 CAAAGGGTAGGAATAAGGGTTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCC
* *
8594638 TAAATTTCAAACATAATGCATTGAAATAATATAAAATTATAAAATTAGAAATTACGATATTTTTT
1 TAAATTTCAAACATAATGCATTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
* *
8594703 AAAGTAATAAAATGCGGAG-GAAAAATACGAACAAATGGCCGAAGTAAAGAGTATTTTACTAACT
66 AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTGTTTTACTAACT
* *
8594767 TTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATTTAATGAAATAATATAAAA
131 TTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATGTACTGAAATAATATAAAA
*
8594832 TAATAAAATACAAAAATAATATATTTTTTTGGAAGTAATAAAATTCGGGAAAATAATACGAGCAA
196 TAATAAAATACGAAAATAATATATTTTTTTGGAAGTAATAAAATTCGGGAAAATAATACGAGCAA
* *
8594897 AGGGTAGGAATAAGGGTTTTTTTTAACACTAAATTCATTTAAAAAACACACTAAATCCC
261 AGGGTAGGAATAAGGGTTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCC
* *
8594956 TAAATTTCAAACATAATGCACTGATATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
1 TAAATTTCAAACATAATGCATTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
**
8595021 AAAGTAATAAAATGCAAAGAAAAAAATACGAACAAATGGCCGAAGT-AAGAGTGTTTTACTAACT
66 AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTGTTTTACTAAC-
*
8595085 TTTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATTTACTGAAATAATATAAA
130 TTTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATGTACTGAAATAATATAAA
* * *
8595150 ATAATAAAGTATGAAAATAATATATTTTTATTGAAAGTAATAAAATTC-GGAAAATTAATACGAG
195 ATAATAAAATACGAAAATAATATATTTTT-TTGGAAGTAATAAAATTCGGGAAAA-TAATACGAG
* *
8595214 CAAAGAGCAGGAATAAGGAGTTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCC
258 CAAAGGGTAGGAATAAGG-GTTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCC
8595277 TAAATTTCAAACATAATGCATTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
1 TAAATTTCAAACATAATGCATTGAAATAATGTAAAATTATAAAATTAGAAATTATGATA-TTTTT
* *
8595342 TAAAGTAATAAAATGCAGAGAAAAAAATACGAACAAATGGCCGAAAT-AAGAGTGTTTTACTAAC
65 TAAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTGTTTTACTAAC
*
8595406 TTTTTTAAAAATTCAGAAATAATTAATACAAAAATTTCAAACAAAATGTACTGAAATAATATAAA
130 TTTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATGTACTGAAATAATATAAA
8595471 ATAATAAAATACGAAAATAATATA-TTTTTTGGAAGTAATAAAATTCGGGAAAATAATACGAGCA
195 ATAATAAAATACGAAAATAATATATTTTTTTGGAAGTAATAAAATTCGGGAAAATAATACGAGCA
*
8595535 AAGGGTAGGAATAAGGGTTTTTTTTTACACTAAATTCATTTAAAAAACACACTAAATCCC
260 AAGGGTAGGAATAAGGGTTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCC
* * * *
8595595 TAAATTTAAAACATAATACACTGAAATAATGTAAAATTATAAAATTAGAAATTATGAAATTTTTT
1 TAAATTTCAAACATAATGCATTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
* *
8595660 AAAGTAATAAAATGCGGAG-AAAAAATAGGAACAAATGGCCGAAAT-AAGAGTGTTTTACTAACT
66 AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTGTTTTACTAAC-
* *
8595723 TTTTTTAAAAATTCAGAAATAATTAATACAAATATTTCTAACAAAATATACTGAAATAATATAAA
130 TTTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATGTACTGAAATAATATAAA
* * *
8595788 ATAATAAAGTACG-AAATAATATATTTTTATTGAAAGTAATAAAATT-TGGAAAATTAATACGAG
195 ATAATAAAATACGAAAATAATATATTTTT-TTGGAAGTAATAAAATTCGGGAAAA-TAATACGAG
* *
8595851 CAAAGGGCAGGAGTAAGGGTTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCC
258 CAAAGGGTAGGAATAAGGGTTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCC
* * *
8595913 TAAATTTCAAACATAATGCATTGAAATAATATAAAATTATAAACTTAGAAATTATAATATTTTTT
1 TAAATTTCAAACATAATGCATTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
*
8595978 AAAGTAATAAAATGCGGAGAAAAAAATATGAACAAATGGCCGAAGTAAAGAGTGTTTTACTAACT
66 AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTGTTTTACTAACT
* * *
8596043 TTTTTAAAAATTCAGAAATAATTAATACAAAAATTTCAAAAAAAATTTACTGAAATAATATAAAA
131 TTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATGTACTGAAATAATATAAAA
*
8596108 TAATAAAATACGAAAATAATATATTTTTATT-GAGAGTAATAAAATTCGGAAAAATAATACGAGC
196 TAATAAAATACGAAAATAATATATTTTT-TTGGA-AGTAATAAAATTCGGGAAAATAATACGAGC
* * *
8596172 AAAGGGTAGGAATAAGAGTTTTTTTTTACACTAAATTCATTTAAAAAACACATTAAATCCC
259 AAAGGGTAGGAATAAGGGTTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCC
*
8596233 TAAATTTCAAACATAATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
1 TAAATTTCAAACATAATGCATTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
8596298 AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAA-AGTGTTTTACTAACT
66 AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTGTTTTACTAACT
* *
8596362 TTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAAAAAAATGTAATGAAATAATATAAAA
131 TTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATGTACTGAAATAATATAAAA
**
8596427 TAATAAAATACGAAAATAATATATTTTTTTTGGAAGTAATAAAATTTAGGAAAATAATACGAGCA
196 TAATAAAATACGAAAATAATATA-TTTTTTTGGAAGTAATAAAATTCGGGAAAATAATACGAGCA
* * *
8596492 AAGGGCAGGAGTAAGGGTTTTTTTTTACACTAAATTAATTTAAAACACACACTAAATCCC
260 AAGGGTAGGAATAAGGGTTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCC
* * * *
8596552 TTAATTTCAAACATAATACATTGAAATAATATAAAATTATAAAATTAGAAATTATTATATTTTTT
1 TAAATTTCAAACATAATGCATTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
**
8596617 AAAGTAATAAAATGCAAAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTGTTTTACTAACT
66 AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTGTTTTACTAACT
*
8596682 TTTTTAAAAATTCAGAAATAATTAATACAAATATTTCTAACAAAATGTACTGAAATAATATAAAA
131 TTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATGTACTGAAATAATATAAAA
*
8596747 TAATAAAATACGAAAATAATATATTTTTATT-GAGAGTAATAAAATTCGGAAAAATAATACGAGC
196 TAATAAAATACGAAAATAATATATTTTT-TTGGA-AGTAATAAAATTCGGGAAAATAATACGAGC
* *
8596811 AAAGAGTAGAAATAA-GG-TTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCC
259 AAAGGGTAGGAATAAGGGTTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCC
8596870 T-AATTTCAAACATAATGCATTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
1 TAAATTTCAAACATAATGCATTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
*
8596934 AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTATTTTACTAACT
66 AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTGTTTTACTAACT
* * *
8596999 TTTTTAAAAATTCAGAAATAATTAATACAAAAATTTCAAACAAAATGTACTGACATATTATAAAA
131 TTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATGTACTGAAATAATATAAAA
*
8597064 TAATAAAATACGAAAATAATATA-TTTTTTGGAAGTAATGAAATTCGGGAAAATAATACGAGCAA
196 TAATAAAATACGAAAATAATATATTTTTTTGGAAGTAATAAAATTCGGGAAAATAATACGAGCAA
*
8597128 AGGGTAGGAATAAGGGTTTTTTTTTACACTAAATTCATTTAAAAAACACACTAAATCCC
261 AGGGTAGGAATAAGGGTTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCC
*
8597187 TAAATTTCAAACATAATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
1 TAAATTTCAAACATAATGCATTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
* *
8597252 AAAGTAATAAAATGAGGAG-AAAAAATACGAACAAATAGCCGAAGT-AAGAGTGTTTTACTAACT
66 AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTGTTTTACTAAC-
8597315 TTTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATGTACTGAAATAATATAAA
130 TTTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATGTACTGAAATAATATAAA
* * *
8597380 ATAATAAAGTACGAAAATAATATATTTTTATTGAAAGTAATAAAATTCGGAAAAATAATACGAGC
195 ATAATAAAATACGAAAATAATATATTTTT-TTGGAAGTAATAAAATTCGGGAAAATAATACGAGC
* * *
8597445 AAAGGGCAGGAGTAAGGGTTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCA
259 AAAGGGTAGGAATAAGGGTTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCC
* *
8597506 TAAATTTCAAACATAATGCATTGAAATAATATAAAATTATAAAATTAGAAATTACGATATTTTTT
1 TAAATTTCAAACATAATGCATTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
*
8597571 AAAGTAATAAAATGCGGAG-AAAAAATACGAACAAATGGCCGAAGTAAAGAGTATTTTACTAACT
66 AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTGTTTTACTAACT
* *
8597635 TTTTTAAAAATTCAGAAATAATTAATACAAATATTTGAAACAAAATTTACTGAAATAATATAAAA
131 TTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATGTACTGAAATAATATAAAA
*
8597700 TAATAAAATACAAAAATAATATA-TTTTTTGGAAGTAATAAAATTCGGGAAAATAATACGAGCAA
196 TAATAAAATACGAAAATAATATATTTTTTTGGAAGTAATAAAATTCGGGAAAATAATACGAGCAA
* *
8597764 AGGGTAGGAATAAAGGTTTTTTTTTAACACTAAATTCATTTAAAAAACACACTAAATCCC
261 AGGGTAGGAATAAGGGTTTTTTTTT-ACACTAAATTAATTTAAAAAACACACTAAATCCC
*
8597824 TAAATTTCAAACATAATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
1 TAAATTTCAAACATAATGCATTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
* *
8597889 AAAGTAATAAAATGAGGAG-AAAAAATACGAACAAATAGCCGAAGT-AAGAGTGTTTTACTAACT
66 AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTGTTTTACTAACT
*
8597952 TTTTTCAAAAATTCAGAAATAATTAATAAAAATATTTCAAACAAAATGTACTGAAATAATATAAA
131 TTTTT-AAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATGTACTGAAATAATATAAA
* * * *
8598017 ATAATAAAGTACGAAAATAATATATTTTTATTGAAAGTAATAAAATT-TGAAAAATAATACGAGC
195 ATAATAAAATACGAAAATAATATATTTTT-TTGGAAGTAATAAAATTCGGGAAAATAATACGAGC
* * * * * *
8598081 AAAGGGCAAGAGTAAAGGTTTTTTTTTACACTAAATTAATTTAAAAAACACTCTAAATCCA
259 AAAGGGTAGGAATAAGGGTTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCC
* * *
8598142 TAAATTTCAAACATAATGCATTGAAATAATATAAAATTAGAAAATTAGAAATTACGATATTTTTT
1 TAAATTTCAAACATAATGCATTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
* *
8598207 AAAGTAATAAAATGCGGAG-AAAAAATACGAACAAATGGCCGAAGTAAAGAGTATTTTACTAAGT
66 AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTGTTTTACTAACT
*
8598271 TTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATTTACTGAAATAATATAAAA
131 TTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATGTACTGAAATAATATAAAA
*
8598336 TAATAAAATACAAAAATAATATATTTTTTTGGAAGTAATAAAATTCGGGAAAATAATACGAGCAA
196 TAATAAAATACGAAAATAATATATTTTTTTGGAAGTAATAAAATTCGGGAAAATAATACGAGCAA
* *
8598401 ATGGTAGGAATAAGGGTTTTTTTTTACACTAAATTCATTTAAAAAACACACTAAATCCC
261 AGGGTAGGAATAAGGGTTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCC
* *
8598460 TAAATTTCAAACATAATGCACTGATATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
1 TAAATTTCAAACATAATGCATTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
**
8598525 AAAGTAATAAAATGCAAAGAAAAAAATACGAACAAATGGCCGAAGT-AAGAGTGTTTTACTAACT
66 AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTGTTTTACTAACT
*
8598589 TTTTTAAAAATTCAGAAATAATTAATACAAATATTTCTAACAAAATGTACTGAAATAATATAAAA
131 TTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATGTACTGAAATAATATAAAA
* * * *
8598654 TAATAAAGTAAGAAAATAATATATTTTTATTGAAAGTAATAAAATTCGGAAAAATAATACGAGCA
196 TAATAAAATACGAAAATAATATATTTTT-TTGGAAGTAATAAAATTCGGGAAAATAATACGAGCA
* *
8598719 AAGGGGAGGAGTAAGGGTTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCC
260 AAGGGTAGGAATAAGGGTTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCC
8598779 T-AATTTCAAACATAATGCATTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
1 TAAATTTCAAACATAATGCATTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
*
8598843 AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTATTTTACTAACT
66 AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTGTTTTACTAACT
* *
8598908 TTTTTAAAAATTCAGAAATAATTAATACAAAAATTTCAAACAAAATGTACTGAAATATTATAAAA
131 TTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATGTACTGAAATAATATAAAA
*
8598973 TAATAAAATACGAAAATAATATA-TTTTTTGGAAGTAATGAAATTCGGGAAAATAATACGAGCAA
196 TAATAAAATACGAAAATAATATATTTTTTTGGAAGTAATAAAATTCGGGAAAATAATACGAGCAA
* *
8599037 AGGGTAGGAATAAGGGTTTCTTTTTACACTAAATTCATTTAAAAAACACACTAAATCCC
261 AGGGTAGGAATAAGGGTTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCC
*
8599096 TAAATTTCAAACATAATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
1 TAAATTTCAAACATAATGCATTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
* *
8599161 AAAGTAATAAAATGAGGAG-AAAAAATACGAACAAATAGCCGAAGT-AAGAGTGTTTTACTAACT
66 AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTGTTTTACTAACT
8599224 TTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATGTACTGAAATAATATAAAA
131 TTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATGTACTGAAATAATATAAAA
* * *
8599289 TAATAAAGTACGAAAATAATATATTTTTATTGAAAGTAATAAAATTCGGAAAAATAATACGAGCA
196 TAATAAAATACGAAAATAATATATTTTT-TTGGAAGTAATAAAATTCGGGAAAATAATACGAGCA
* * * *
8599354 AAGGGCAGGAGTAAGGG-TTTTTTTTACACTAAATTAATTTAAAAAACACTCTAAATCCA
260 AAGGGTAGGAATAAGGGTTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCC
*
8599413 TAAATTTCAAACATAATGCATTG--A-AA--T--AA-TATAAAATTAGAAATTACGATATTTTTT
1 TAAATTTCAAACATAATGCATTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
*
8599470 AAAGTAATAAAATGCGGAG-AAAAAATACGAACAAATGGCCGAAGTAAAGAGTATTTTACTAACT
66 AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTGTTTTACTAACT
* *
8599534 TTTTTAAAAATTCAGAAATAATTAATACAAATATTTGAAACAAAATTTACTGAAATAATATAAAA
131 TTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATGTACTGAAATAATATAAAA
*
8599599 TAATAAAATACAAAAATAATATA-TTTTTTGGAAGTAATAAAATTCGGGAAAATAATACGAGCAA
196 TAATAAAATACGAAAATAATATATTTTTTTGGAAGTAATAAAATTCGGGAAAATAATACGAGCAA
* *
8599663 AGGGTAGGAATAAAGGTTTTTTTTTAACACTAAATTCATTTAAAAAACACACTAAATCCC
261 AGGGTAGGAATAAGGGTTTTTTTTT-ACACTAAATTAATTTAAAAAACACACTAAATCCC
*
8599723 TAAATTTCAAACATAATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
1 TAAATTTCAAACATAATGCATTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
* *
8599788 AAAGTAATAAAATGAGGAG-AAAAAATACGAACAAATAGCCGAAGT-AAGAGTGTTTTACTAACT
66 AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTGTTTTACTAACT
* *
8599851 TTTTTCAAAAATTCAAAAATAATTAATAAAAATATTTCAAACAAAATGTACTGAAATAATATAAA
131 TTTTT-AAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATGTACTGAAATAATATAAA
* * * *
8599916 ATAATAAAGTACGAAAATAATATATTTTTATTGAAAGTAATAAAATT-TGAAAAATAATACGAGC
195 ATAATAAAATACGAAAATAATATATTTTT-TTGGAAGTAATAAAATTCGGGAAAATAATACGAGC
* * * * *
8599980 AAAGGGCAAGAGTAAGGGTTTTTTTTTTTACACTAAATTAATTTAAAAAACACTCTAAATCCA
259 AAAGGGTAGGAATAAGGG--TTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCC
* *
8600043 TAAATTTCAAACATAATGCATTGAAATAATATAAAATTATAAAATTAGAAATTACGATATTTTTT
1 TAAATTTCAAACATAATGCATTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
*
8600108 AAAGTAATAAAATGCGGAG-AAAAAATACGAACAAATGGCCGAAGTAAAGAGTATTTTACTAACT
66 AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTGTTTTACTAACT
* * *
8600172 TTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAGCAAAATTTAATGAAATAATATAAAA
131 TTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATGTACTGAAATAATATAAAA
*
8600237 TAATAAAATACAAAAATAATATATTTTTTTGGAAGTAATAAAATTCGGGAAAATAATACGAGCAA
196 TAATAAAATACGAAAATAATATATTTTTTTGGAAGTAATAAAATTCGGGAAAATAATACGAGCAA
* *
8600302 AGGGTAGGAATAAGGGTTTTTTTTTTACACTAAATTCATTTAAAAAACACACTATATCCC
261 AGGGTAGGAATAAGGG-TTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCC
* *
8600362 TAAATTTCAAACATAATGCACTGATATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
1 TAAATTTCAAACATAATGCATTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
**
8600427 AAAGTAATAAAATGCAAAGAAAAAAATACGAACAAATGGCCGAAGT-AAGAGTGTTTTACTAACT
66 AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTGTTTTACTAACT
*
8600491 TTTTTAAAAATTCAGAAATAATTAATACAAATATTTCTAACAAAATGTACTGAAATAATATAAAA
131 TTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATGTACTGAAATAATATAAAA
* * * *
8600556 TAATAAAGTAAGAAAATAATATATTTTTATTGAAAGTAATAAAATTCGGAAAAATAATACGAGCA
196 TAATAAAATACGAAAATAATATATTTTT-TTGGAAGTAATAAAATTCGGGAAAATAATACGAGCA
* *
8600621 AAGGGGAGGAGTAAGGGTTTTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCC
260 AAGGGTAGGAATAAGGG--TTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCC
* *
8600683 TAAATTTCAAACATAATGCATTGAAATAATATAAAATTATAAAATTAGAAATTACGATATTTTTT
1 TAAATTTCAAACATAATGCATTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
* *
8600748 AATGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAAAAGTGTTTTACTAACT
66 AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTGTTTTACTAACT
* *
8600813 TTTTTAAAAATTCAGAAATAATTAATACAAAAATTTCAAACAAAATTTACTGAAATAATATAAAA
131 TTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATGTACTGAAATAATATAAAA
*
8600878 TAATAAAATACGAAAATAATAT-TTTTTTTGGAAGTAATAAAATTCGGGAAAATAATACGAGTAA
196 TAATAAAATACGAAAATAATATATTTTTTTGGAAGTAATAAAATTCGGGAAAATAATACGAGCAA
* * *
8600942 AGGGCAGGAGTAA--GTATTTTTTTTACACTAAATTAATTTAAAAAACACACTAATTCCC
261 AGGGTAGGAATAAGGGT-TTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCC
*
8601000 TAAATTTCAAGCATAATGCATTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
1 TAAATTTCAAACATAATGCATTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
* *
8601065 AAAGTAATAAAATGCGGAGTAAAAAAATACGAACAAATGGCCGACGTAAAGAGTGTTTTACTAAA
66 AAAGTAATAAAATGCGGAG-AAAAAAATACGAACAAATGGCCGAAGTAAAGAGTGTTTTACTAAC
* * * *
8601130 TTTTTTAAAAATTCAGTAATAATTAATACAAAAATTTCAAAAAAAAATGTATTGAAATAATATAA
130 TTTTTTAAAAATTCAGAAATAATTAATACAAATATTTC-AAACAAAATGTACTGAAATAATATAA
* * * *
8601195 AATAATAAAATACGAAAATAATATAATTGTTTGGAATTAATAAAATTTGGGAAAATAATACGAGC
194 AATAATAAAATACGAAAATAATATATTTTTTTGGAAGTAATAAAATTCGGGAAAATAATACGAGC
* * *
8601260 AAAGGGAAAGAATAAGGG-TTTTTTTTACACTAAATTAATTTAAAAAGCACACTAAATCCC
259 AAAGGGTAGGAATAAGGGTTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCC
*
8601320 TAAATTTCAAACATAATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
1 TAAATTTCAAACATAATGCATTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
8601385 AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTGTTTTACTAACT
66 AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTGTTTTACTAACT
8601450 TTTTT
131 TTTTT
8601455 TTCAACTTGT
Statistics
Matches: 6951, Mismatches: 424, Indels: 158
0.92 0.06 0.02
Matches are distributed among these distances:
308 48 0.01
309 82 0.01
310 156 0.02
312 2 0.00
313 2 0.00
314 2 0.00
315 45 0.01
316 222 0.03
317 1040 0.15
318 1903 0.27
319 1856 0.27
320 1016 0.15
321 410 0.06
322 167 0.02
ACGTcount: A:0.49, C:0.09, G:0.11, T:0.31
Consensus pattern (319 bp):
TAAATTTCAAACATAATGCATTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTGTTTTACTAACT
TTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATGTACTGAAATAATATAAAA
TAATAAAATACGAAAATAATATATTTTTTTGGAAGTAATAAAATTCGGGAAAATAATACGAGCAA
AGGGTAGGAATAAGGGTTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCC
Found at i:8594826 original size:637 final size:638
Alignment explanation
Indices: 8593683--8601454 Score: 12849
Period size: 637 Copynumber: 12.2 Consensus size: 638
8593673 GTATATTTAA
*
8593683 TAAATTTCAAACATAATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
1 TAAATTTCAAACATAATGCATTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
*
8593748 AAAGTAATAAAATACGGAGAAAAAAATACGAACAAATGGCCGAAGT-AAGAGTGTTTTACTAACT
66 AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTGTTTTACTAACT
* * *
8593812 TTTTTAAAAATTCAGAAATAATGAATACAAATATTTCTAACAAAATGTACTGAAATAATATAAAA
131 TTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATTTACTGAAATAATATAAAA
* * * *
8593877 TAATAAACTATGAAAATAATATATTTTTATTGAAAGTAATAAAATTCGTGAAAATAATACGAGCA
196 TAATAAAATACGAAAATAATATATTTTT-TTGGAAGTAATAAAATTCGGGAAAATAATACGAGCA
* *
8593942 AAGGGCAAGAATAA-GG-TTTTTTTTACACTAAATTAATTTAGAAAACACACTAAATCCCTAAAT
260 AAGGGCAGGAATAAGGGTTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCCTAAAT
* * *
8594005 TTCAAACATAATACATTGAAATAATGTAAAATTATAAAATTAGAAATTATGATTTTTTTTAAAGT
325 TTCAAACATAATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTTAAAGT
*
8594070 AATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTGTTTTACTAAATTTTTT
390 AATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGT-AAGAGTGTTTTACTAACTTTTTT
* * *
8594135 AAAAATTTAGAAATAATTAATACAAAAATTTCAAACAAAATTTACTGAAATAATATAAAATAATA
454 AAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATGTACTGAAATAATATAAAATAATA
* * * *
8594200 AAATACGAAAATAATATA-TTTT-TTGGAAGTAATAAAATTTGGGAAAATAATACGAGCAAATGG
519 AAATACGAAAATAATATATTTTTATTGAAAGTAATAAAATTCGGAAAAATAATACGAGCAAAGGG
*
8594263 TAGGAAG-AAGGGTTTTTTTTTTACACTAAATTCATTTAAAAAACACACTAAATCCC
584 TAGG-AGTAAGGG-TTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCC
*
8594319 TAAATTTCAAACATAATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
1 TAAATTTCAAACATAATGCATTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
*
8594384 AAAGTAATAAAATGCGGAGAAAAAAATTCGAACAAATGGCCGAAGT-AAGAGTGTTTTACTAACT
66 AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTGTTTTACTAAC-
*
8594448 TTTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATGTACTGAAATAATATAAA
130 TTTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATTTACTGAAATAATATAAA
* *
8594513 ATAATAAAGTACGAAAATAATATATTTTTATTGAAAGTAATAAAATTC-GGAAAATTAATACGAG
195 ATAATAAAATACGAAAATAATATATTTTT-TTGGAAGTAATAAAATTCGGGAAAA-TAATACGAG
* * *
8594577 CAAAGGGCAAGAGTAAGGG-TTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCATAA
258 CAAAGGGCAGGAATAAGGGTTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCCTAA
* * *
8594641 ATTTCAAACATAATGCATTGAAATAATATAAAATTATAAAATTAGAAATTACGATATTTTTTAAA
323 ATTTCAAACATAATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTTAAA
* *
8594706 GTAATAAAATGCGGAG-GAAAAATACGAACAAATGGCCGAAGTAAAGAGTATTTTACTAACTTTT
388 GTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGT-AAGAGTGTTTTACTAACTTTT
* *
8594770 TTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATTTAATGAAATAATATAAAATAA
452 TTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATGTACTGAAATAATATAAAATAA
* * *
8594835 TAAAATACAAAAATAATATATTTTT-TTGGAAGTAATAAAATTCGGGAAAATAATACGAGCAAAG
517 TAAAATACGAAAATAATATATTTTTATTGAAAGTAATAAAATTCGGAAAAATAATACGAGCAAAG
* * *
8594899 GGTAGGAATAAGGGTTTTTTTTAACACTAAATTCATTTAAAAAACACACTAAATCCC
582 GGTAGGAGTAAGGGTTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCC
* *
8594956 TAAATTTCAAACATAATGCACTGATATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
1 TAAATTTCAAACATAATGCATTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
**
8595021 AAAGTAATAAAATGCAAAGAAAAAAATACGAACAAATGGCCGAAGT-AAGAGTGTTTTACTAACT
66 AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTGTTTTACTAAC-
8595085 TTTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATTTACTGAAATAATATAAA
130 TTTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATTTACTGAAATAATATAAA
* * *
8595150 ATAATAAAGTATGAAAATAATATATTTTTATTGAAAGTAATAAAATTC-GGAAAATTAATACGAG
195 ATAATAAAATACGAAAATAATATATTTTT-TTGGAAGTAATAAAATTCGGGAAAA-TAATACGAG
*
8595214 CAAAGAGCAGGAATAAGGAGTTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCCTA
258 CAAAGGGCAGGAATAAGG-GTTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCCTA
*
8595279 AATTTCAAACATAATGCATTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTTTA
322 AATTTCAAACATAATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATA-TTTTTTA
* *
8595344 AAGTAATAAAATGCAGAGAAAAAAATACGAACAAATGGCCGAAATAAGAGTGTTTTACTAACTTT
386 AAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAGAGTGTTTTACTAACTTT
*
8595409 TTTAAAAATTCAGAAATAATTAATACAAAAATTTCAAACAAAATGTACTGAAATAATATAAAATA
451 TTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATGTACTGAAATAATATAAAATA
* *
8595474 ATAAAATACGAAAATAATATA-TTTT-TTGGAAGTAATAAAATTCGGGAAAATAATACGAGCAAA
516 ATAAAATACGAAAATAATATATTTTTATTGAAAGTAATAAAATTCGGAAAAATAATACGAGCAAA
* *
8595537 GGGTAGGAATAAGGGTTTTTTTTTACACTAAATTCATTTAAAAAACACACTAAATCCC
581 GGGTAGGAGTAAGGGTTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCC
* * * *
8595595 TAAATTTAAAACATAATACACTGAAATAATGTAAAATTATAAAATTAGAAATTATGAAATTTTTT
1 TAAATTTCAAACATAATGCATTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
* *
8595660 AAAGTAATAAAATGCGGAG-AAAAAATAGGAACAAATGGCCGAAAT-AAGAGTGTTTTACTAACT
66 AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTGTTTTACTAAC-
* *
8595723 TTTTTTAAAAATTCAGAAATAATTAATACAAATATTTCTAACAAAATATACTGAAATAATATAAA
130 TTTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATTTACTGAAATAATATAAA
* * *
8595788 ATAATAAAGTACG-AAATAATATATTTTTATTGAAAGTAATAAAATT-TGGAAAATTAATACGAG
195 ATAATAAAATACGAAAATAATATATTTTT-TTGGAAGTAATAAAATTCGGGAAAA-TAATACGAG
*
8595851 CAAAGGGCAGGAGTAAGGGTTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCCTAA
258 CAAAGGGCAGGAATAAGGGTTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCCTAA
* * * *
8595916 ATTTCAAACATAATGCATTGAAATAATATAAAATTATAAACTTAGAAATTATAATATTTTTTAAA
323 ATTTCAAACATAATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTTAAA
*
8595981 GTAATAAAATGCGGAGAAAAAAATATGAACAAATGGCCGAAGTAAAGAGTGTTTTACTAACTTTT
388 GTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGT-AAGAGTGTTTTACTAACTTTT
* * *
8596046 TTAAAAATTCAGAAATAATTAATACAAAAATTTCAAAAAAAATTTACTGAAATAATATAAAATAA
452 TTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATGTACTGAAATAATATAAAATAA
*
8596111 TAAAATACGAAAATAATATATTTTTATTGAGAGTAATAAAATTCGGAAAAATAATACGAGCAAAG
517 TAAAATACGAAAATAATATATTTTTATTGAAAGTAATAAAATTCGGAAAAATAATACGAGCAAAG
* * * *
8596176 GGTAGGAATAAGAGTTTTTTTTTACACTAAATTCATTTAAAAAACACATTAAATCCC
582 GGTAGGAGTAAGGGTTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCC
*
8596233 TAAATTTCAAACATAATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
1 TAAATTTCAAACATAATGCATTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
8596298 AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAA-AGTGTTTTACTAACT
66 AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTGTTTTACTAACT
* * *
8596362 TTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAAAAAAATGTAATGAAATAATATAAAA
131 TTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATTTACTGAAATAATATAAAA
**
8596427 TAATAAAATACGAAAATAATATATTTTTTTTGGAAGTAATAAAATTTAGGAAAATAATACGAGCA
196 TAATAAAATACGAAAATAATATA-TTTTTTTGGAAGTAATAAAATTCGGGAAAATAATACGAGCA
* * *
8596492 AAGGGCAGGAGTAAGGGTTTTTTTTTACACTAAATTAATTTAAAACACACACTAAATCCCTTAAT
260 AAGGGCAGGAATAAGGGTTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCCTAAAT
* * * *
8596557 TTCAAACATAATACATTGAAATAATATAAAATTATAAAATTAGAAATTATTATATTTTTTAAAGT
325 TTCAAACATAATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTTAAAGT
**
8596622 AATAAAATGCAAAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTGTTTTACTAACTTTTTT
390 AATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGT-AAGAGTGTTTTACTAACTTTTTT
*
8596687 AAAAATTCAGAAATAATTAATACAAATATTTCTAACAAAATGTACTGAAATAATATAAAATAATA
454 AAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATGTACTGAAATAATATAAAATAATA
* *
8596752 AAATACGAAAATAATATATTTTTATTGAGAGTAATAAAATTCGGAAAAATAATACGAGCAAAGAG
519 AAATACGAAAATAATATATTTTTATTGAAAGTAATAAAATTCGGAAAAATAATACGAGCAAAGGG
* *
8596817 TAGAAATAA-GG-TTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCC
584 TAGGAGTAAGGGTTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCC
8596870 T-AATTTCAAACATAATGCATTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
1 TAAATTTCAAACATAATGCATTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
*
8596934 AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTATTTTACTAACT
66 AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTGTTTTACTAACT
* * * *
8596999 TTTTTAAAAATTCAGAAATAATTAATACAAAAATTTCAAACAAAATGTACTGACATATTATAAAA
131 TTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATTTACTGAAATAATATAAAA
*
8597064 TAATAAAATACGAAAATAATATA-TTTTTTGGAAGTAATGAAATTCGGGAAAATAATACGAGCAA
196 TAATAAAATACGAAAATAATATATTTTTTTGGAAGTAATAAAATTCGGGAAAATAATACGAGCAA
* *
8597128 AGGGTAGGAATAAGGGTTTTTTTTTACACTAAATTCATTTAAAAAACACACTAAATCCCTAAATT
261 AGGGCAGGAATAAGGGTTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCCTAAATT
8597193 TCAAACATAATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTTAAAGTA
326 TCAAACATAATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTTAAAGTA
* *
8597258 ATAAAATGAGGAG-AAAAAATACGAACAAATAGCCGAAGTAAGAGTGTTTTACTAACTTTTTTTA
391 ATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAGAGTGTTTTACTAAC-TTTTTTA
8597322 AAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATGTACTGAAATAATATAAAATAATAA
455 AAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATGTACTGAAATAATATAAAATAATAA
* *
8597387 AGTACGAAAATAATATATTTTTATTGAAAGTAATAAAATTCGGAAAAATAATACGAGCAAAGGGC
520 AATACGAAAATAATATATTTTTATTGAAAGTAATAAAATTCGGAAAAATAATACGAGCAAAGGGT
*
8597452 AGGAGTAAGGGTTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCA
585 AGGAGTAAGGGTTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCC
* *
8597506 TAAATTTCAAACATAATGCATTGAAATAATATAAAATTATAAAATTAGAAATTACGATATTTTTT
1 TAAATTTCAAACATAATGCATTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
*
8597571 AAAGTAATAAAATGCGGAG-AAAAAATACGAACAAATGGCCGAAGTAAAGAGTATTTTACTAACT
66 AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTGTTTTACTAACT
*
8597635 TTTTTAAAAATTCAGAAATAATTAATACAAATATTTGAAACAAAATTTACTGAAATAATATAAAA
131 TTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATTTACTGAAATAATATAAAA
*
8597700 TAATAAAATACAAAAATAATATA-TTTTTTGGAAGTAATAAAATTCGGGAAAATAATACGAGCAA
196 TAATAAAATACGAAAATAATATATTTTTTTGGAAGTAATAAAATTCGGGAAAATAATACGAGCAA
* * *
8597764 AGGGTAGGAATAAAGGTTTTTTTTTAACACTAAATTCATTTAAAAAACACACTAAATCCCTAAAT
261 AGGGCAGGAATAAGGGTTTTTTTTT-ACACTAAATTAATTTAAAAAACACACTAAATCCCTAAAT
8597829 TTCAAACATAATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTTAAAGT
325 TTCAAACATAATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTTAAAGT
* *
8597894 AATAAAATGAGGAG-AAAAAATACGAACAAATAGCCGAAGTAAGAGTGTTTTACTAACTTTTTTC
390 AATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAGAGTGTTTTACTAACTTTTTT-
*
8597958 AAAAATTCAGAAATAATTAATAAAAATATTTCAAACAAAATGTACTGAAATAATATAAAATAATA
454 AAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATGTACTGAAATAATATAAAATAATA
* *
8598023 AAGTACGAAAATAATATATTTTTATTGAAAGTAATAAAATT-TGAAAAATAATACGAGCAAAGGG
519 AAATACGAAAATAATATATTTTTATTGAAAGTAATAAAATTCGGAAAAATAATACGAGCAAAGGG
* * * * *
8598087 CAAGAGTAAAGGTTTTTTTTTACACTAAATTAATTTAAAAAACACTCTAAATCCA
584 TAGGAGTAAGGGTTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCC
* * *
8598142 TAAATTTCAAACATAATGCATTGAAATAATATAAAATTAGAAAATTAGAAATTACGATATTTTTT
1 TAAATTTCAAACATAATGCATTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
* *
8598207 AAAGTAATAAAATGCGGAG-AAAAAATACGAACAAATGGCCGAAGTAAAGAGTATTTTACTAAGT
66 AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTGTTTTACTAACT
8598271 TTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATTTACTGAAATAATATAAAA
131 TTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATTTACTGAAATAATATAAAA
*
8598336 TAATAAAATACAAAAATAATATATTTTTTTGGAAGTAATAAAATTCGGGAAAATAATACGAGCAA
196 TAATAAAATACGAAAATAATATATTTTTTTGGAAGTAATAAAATTCGGGAAAATAATACGAGCAA
* * *
8598401 ATGGTAGGAATAAGGGTTTTTTTTTACACTAAATTCATTTAAAAAACACACTAAATCCCTAAATT
261 AGGGCAGGAATAAGGGTTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCCTAAATT
*
8598466 TCAAACATAATGCACTGATATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTTAAAGTA
326 TCAAACATAATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTTAAAGTA
**
8598531 ATAAAATGCAAAGAAAAAAATACGAACAAATGGCCGAAGTAAGAGTGTTTTACTAACTTTTTTAA
391 ATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAGAGTGTTTTACTAACTTTTTTAA
*
8598596 AAATTCAGAAATAATTAATACAAATATTTCTAACAAAATGTACTGAAATAATATAAAATAATAAA
456 AAATTCAGAAATAATTAATACAAATATTTCAAACAAAATGTACTGAAATAATATAAAATAATAAA
* * *
8598661 GTAAGAAAATAATATATTTTTATTGAAAGTAATAAAATTCGGAAAAATAATACGAGCAAAGGGGA
521 ATACGAAAATAATATATTTTTATTGAAAGTAATAAAATTCGGAAAAATAATACGAGCAAAGGGTA
8598726 GGAGTAAGGGTTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCC
586 GGAGTAAGGGTTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCC
8598779 T-AATTTCAAACATAATGCATTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
1 TAAATTTCAAACATAATGCATTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
*
8598843 AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTATTTTACTAACT
66 AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTGTTTTACTAACT
* * *
8598908 TTTTTAAAAATTCAGAAATAATTAATACAAAAATTTCAAACAAAATGTACTGAAATATTATAAAA
131 TTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATTTACTGAAATAATATAAAA
*
8598973 TAATAAAATACGAAAATAATATA-TTTTTTGGAAGTAATGAAATTCGGGAAAATAATACGAGCAA
196 TAATAAAATACGAAAATAATATATTTTTTTGGAAGTAATAAAATTCGGGAAAATAATACGAGCAA
* * *
8599037 AGGGTAGGAATAAGGGTTTCTTTTTACACTAAATTCATTTAAAAAACACACTAAATCCCTAAATT
261 AGGGCAGGAATAAGGGTTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCCTAAATT
8599102 TCAAACATAATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTTAAAGTA
326 TCAAACATAATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTTAAAGTA
* *
8599167 ATAAAATGAGGAG-AAAAAATACGAACAAATAGCCGAAGTAAGAGTGTTTTACTAACTTTTTTAA
391 ATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAGAGTGTTTTACTAACTTTTTTAA
8599231 AAATTCAGAAATAATTAATACAAATATTTCAAACAAAATGTACTGAAATAATATAAAATAATAAA
456 AAATTCAGAAATAATTAATACAAATATTTCAAACAAAATGTACTGAAATAATATAAAATAATAAA
* *
8599296 GTACGAAAATAATATATTTTTATTGAAAGTAATAAAATTCGGAAAAATAATACGAGCAAAGGGCA
521 ATACGAAAATAATATATTTTTATTGAAAGTAATAAAATTCGGAAAAATAATACGAGCAAAGGGTA
* *
8599361 GGAGTAAGGG-TTTTTTTTACACTAAATTAATTTAAAAAACACTCTAAATCCA
586 GGAGTAAGGGTTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCC
*
8599413 TAAATTTCAAACATAATGCATTG--A-AA--T--AA-TATAAAATTAGAAATTACGATATTTTTT
1 TAAATTTCAAACATAATGCATTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
*
8599470 AAAGTAATAAAATGCGGAG-AAAAAATACGAACAAATGGCCGAAGTAAAGAGTATTTTACTAACT
66 AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTGTTTTACTAACT
*
8599534 TTTTTAAAAATTCAGAAATAATTAATACAAATATTTGAAACAAAATTTACTGAAATAATATAAAA
131 TTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATTTACTGAAATAATATAAAA
*
8599599 TAATAAAATACAAAAATAATATA-TTTTTTGGAAGTAATAAAATTCGGGAAAATAATACGAGCAA
196 TAATAAAATACGAAAATAATATATTTTTTTGGAAGTAATAAAATTCGGGAAAATAATACGAGCAA
* * *
8599663 AGGGTAGGAATAAAGGTTTTTTTTTAACACTAAATTCATTTAAAAAACACACTAAATCCCTAAAT
261 AGGGCAGGAATAAGGGTTTTTTTTT-ACACTAAATTAATTTAAAAAACACACTAAATCCCTAAAT
8599728 TTCAAACATAATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTTAAAGT
325 TTCAAACATAATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTTAAAGT
* *
8599793 AATAAAATGAGGAG-AAAAAATACGAACAAATAGCCGAAGTAAGAGTGTTTTACTAACTTTTTTC
390 AATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAGAGTGTTTTACTAACTTTTTT-
* *
8599857 AAAAATTCAAAAATAATTAATAAAAATATTTCAAACAAAATGTACTGAAATAATATAAAATAATA
454 AAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATGTACTGAAATAATATAAAATAATA
* *
8599922 AAGTACGAAAATAATATATTTTTATTGAAAGTAATAAAATT-TGAAAAATAATACGAGCAAAGGG
519 AAATACGAAAATAATATATTTTTATTGAAAGTAATAAAATTCGGAAAAATAATACGAGCAAAGGG
* * * *
8599986 CAAGAGTAAGGGTTTTTTTTTTTACACTAAATTAATTTAAAAAACACTCTAAATCCA
584 TAGGAGTAAGGG--TTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCC
* *
8600043 TAAATTTCAAACATAATGCATTGAAATAATATAAAATTATAAAATTAGAAATTACGATATTTTTT
1 TAAATTTCAAACATAATGCATTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
*
8600108 AAAGTAATAAAATGCGGAG-AAAAAATACGAACAAATGGCCGAAGTAAAGAGTATTTTACTAACT
66 AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTGTTTTACTAACT
* *
8600172 TTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAGCAAAATTTAATGAAATAATATAAAA
131 TTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATTTACTGAAATAATATAAAA
*
8600237 TAATAAAATACAAAAATAATATATTTTTTTGGAAGTAATAAAATTCGGGAAAATAATACGAGCAA
196 TAATAAAATACGAAAATAATATATTTTTTTGGAAGTAATAAAATTCGGGAAAATAATACGAGCAA
* * *
8600302 AGGGTAGGAATAAGGGTTTTTTTTTTACACTAAATTCATTTAAAAAACACACTATATCCCTAAAT
261 AGGGCAGGAATAAGGG-TTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCCTAAAT
*
8600367 TTCAAACATAATGCACTGATATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTTAAAGT
325 TTCAAACATAATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTTAAAGT
**
8600432 AATAAAATGCAAAGAAAAAAATACGAACAAATGGCCGAAGTAAGAGTGTTTTACTAACTTTTTTA
390 AATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAGAGTGTTTTACTAACTTTTTTA
*
8600497 AAAATTCAGAAATAATTAATACAAATATTTCTAACAAAATGTACTGAAATAATATAAAATAATAA
455 AAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATGTACTGAAATAATATAAAATAATAA
* * *
8600562 AGTAAGAAAATAATATATTTTTATTGAAAGTAATAAAATTCGGAAAAATAATACGAGCAAAGGGG
520 AATACGAAAATAATATATTTTTATTGAAAGTAATAAAATTCGGAAAAATAATACGAGCAAAGGGT
8600627 AGGAGTAAGGGTTTTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCC
585 AGGAGTAAGGG--TTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCC
* *
8600683 TAAATTTCAAACATAATGCATTGAAATAATATAAAATTATAAAATTAGAAATTACGATATTTTTT
1 TAAATTTCAAACATAATGCATTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
* *
8600748 AATGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAAAAGTGTTTTACTAACT
66 AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTGTTTTACTAACT
*
8600813 TTTTTAAAAATTCAGAAATAATTAATACAAAAATTTCAAACAAAATTTACTGAAATAATATAAAA
131 TTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATTTACTGAAATAATATAAAA
*
8600878 TAATAAAATACGAAAATAATAT-TTTTTTTGGAAGTAATAAAATTCGGGAAAATAATACGAGTAA
196 TAATAAAATACGAAAATAATATATTTTTTTGGAAGTAATAAAATTCGGGAAAATAATACGAGCAA
* *
8600942 AGGGCAGGAGTAA--GTATTTTTTTTACACTAAATTAATTTAAAAAACACACTAATTCCCTAAAT
261 AGGGCAGGAATAAGGGT-TTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCCTAAAT
* *
8601005 TTCAAGCATAATGCATTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTTAAAGT
325 TTCAAACATAATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTTAAAGT
* *
8601070 AATAAAATGCGGAGTAAAAAAATACGAACAAATGGCCGACGTAAAGAGTGTTTTACTAAATTTTT
390 AATAAAATGCGGAG-AAAAAAATACGAACAAATGGCCGAAGT-AAGAGTGTTTTACTAACTTTTT
* * * *
8601135 TAAAAATTCAGTAATAATTAATACAAAAATTTCAAAAAAAAATGTATTGAAATAATATAAAATAA
453 TAAAAATTCAGAAATAATTAATACAAATATTTC-AAACAAAATGTACTGAAATAATATAAAATAA
* * * * * *
8601200 TAAAATACGAAAATAATATAATTGT-TTGGAATTAATAAAATTTGGGAAAATAATACGAGCAAAG
517 TAAAATACGAAAATAATATATTTTTATTGAAAGTAATAAAATTCGGAAAAATAATACGAGCAAAG
* * * *
8601264 GGAAAGAATAAGGG-TTTTTTTTACACTAAATTAATTTAAAAAGCACACTAAATCCC
582 GGTAGGAGTAAGGGTTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCC
*
8601320 TAAATTTCAAACATAATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
1 TAAATTTCAAACATAATGCATTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
8601385 AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTGTTTTACTAACT
66 AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTGTTTTACTAACT
8601450 TTTTT
131 TTTTT
8601455 TTCAACTTGT
Statistics
Matches: 6823, Mismatches: 261, Indels: 103
0.95 0.04 0.01
Matches are distributed among these distances:
626 191 0.03
627 246 0.04
628 106 0.02
630 66 0.01
632 3 0.00
633 20 0.00
634 204 0.03
635 429 0.06
636 1446 0.21
637 1609 0.24
638 834 0.12
639 967 0.14
640 503 0.07
641 199 0.03
ACGTcount: A:0.49, C:0.09, G:0.11, T:0.31
Consensus pattern (638 bp):
TAAATTTCAAACATAATGCATTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTT
AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTGTTTTACTAACT
TTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATTTACTGAAATAATATAAAA
TAATAAAATACGAAAATAATATATTTTTTTGGAAGTAATAAAATTCGGGAAAATAATACGAGCAA
AGGGCAGGAATAAGGGTTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCCTAAATT
TCAAACATAATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTTAAAGTA
ATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAGAGTGTTTTACTAACTTTTTTAA
AAATTCAGAAATAATTAATACAAATATTTCAAACAAAATGTACTGAAATAATATAAAATAATAAA
ATACGAAAATAATATATTTTTATTGAAAGTAATAAAATTCGGAAAAATAATACGAGCAAAGGGTA
GGAGTAAGGGTTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATCCC
Found at i:8607106 original size:27 final size:27
Alignment explanation
Indices: 8607049--8607117 Score: 86
Period size: 27 Copynumber: 2.6 Consensus size: 27
8607039 ATAACACAAG
*
8607049 TGGTGCCGCCCAT-GGAAAGGCACCAT
1 TGGTGCTGCCCATGGGAAAGGCACCAT
* * *
8607075 CGGTGCTGCCCATGGGAATGGCACCTT
1 TGGTGCTGCCCATGGGAAAGGCACCAT
*
8607102 TGGTGCTGCCTATGGG
1 TGGTGCTGCCCATGGG
8607118 TTACCCTCCT
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
26 11 0.31
27 25 0.69
ACGTcount: A:0.16, C:0.28, G:0.35, T:0.22
Consensus pattern (27 bp):
TGGTGCTGCCCATGGGAAAGGCACCAT
Found at i:8609047 original size:28 final size:28
Alignment explanation
Indices: 8609015--8609074 Score: 83
Period size: 27 Copynumber: 2.2 Consensus size: 28
8609005 AGAAATTGAT
8609015 TTTATATTTTTTTAAA-ATTGAATTTTAC
1 TTTAT-TTTTTTTAAATATTGAATTTTAC
8609043 TTTATTTTTTTTAAATATTG-ATTTT--
1 TTTATTTTTTTTAAATATTGAATTTTAC
8609068 TTTATTT
1 TTTATTT
8609075 GGTGGTGCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
25 7 0.23
27 15 0.48
28 9 0.29
ACGTcount: A:0.27, C:0.02, G:0.03, T:0.68
Consensus pattern (28 bp):
TTTATTTTTTTTAAATATTGAATTTTAC
Found at i:8609050 original size:23 final size:22
Alignment explanation
Indices: 8609007--8609050 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
8608997 GACCACCAAG
*
8609007 AAATTGATTTTATATTTTTTTA
1 AAATTGATTTTATATTATTTTA
8609029 AAATTGAATTTTACT-TTATTTT
1 AAATTG-ATTTTA-TATTATTTT
8609051 TTTTAAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 6 0.32
23 12 0.63
24 1 0.05
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.61
Consensus pattern (22 bp):
AAATTGATTTTATATTATTTTA
Found at i:8609149 original size:21 final size:23
Alignment explanation
Indices: 8609111--8609157 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
8609101 CACCCTTAAG
* *
8609111 TTTTTTTTAAATTGAA-TTTTTA
1 TTTTTTTAAAAATGAATTTTTTA
8609133 TTTTTTTAAAAAT-AATTTTTTA
1 TTTTTTTAAAAATGAATTTTTTA
8609155 TTT
1 TTT
8609158 GGTGTTGCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 2 0.09
22 20 0.91
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (23 bp):
TTTTTTTAAAAATGAATTTTTTA
Found at i:8609257 original size:21 final size:22
Alignment explanation
Indices: 8609233--8609282 Score: 68
Period size: 21 Copynumber: 2.3 Consensus size: 22
8609223 TAGTACCACC
8609233 AATTAAAAATTC-A-TTTAAAAA
1 AATTAAAAA-TCAATTTTAAAAA
8609254 AATTAAAAATCAATTTTAAAAA
1 AATTAAAAATCAATTTTAAAAA
8609276 AACTTAA
1 AA-TTAA
8609283 TGGGTGATCA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
20 2 0.08
21 10 0.38
22 10 0.38
23 4 0.15
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32
Consensus pattern (22 bp):
AATTAAAAATCAATTTTAAAAA
Found at i:8613113 original size:2 final size:2
Alignment explanation
Indices: 8613106--8613136 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
8613096 TTTATAACAA
8613106 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8613137 AACGAATACA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8613570 original size:33 final size:32
Alignment explanation
Indices: 8613514--8613587 Score: 87
Period size: 33 Copynumber: 2.3 Consensus size: 32
8613504 TTTAAAAAAT
* * *
8613514 ATATATAATAAATGTATATAAATATATTTTCAA
1 ATATAAAATGAATGTATATAAATAAATTTT-AA
*
8613547 ATATCAAATGAATG-ATACTAAATAAATTTTAA
1 ATATAAAATGAATGTATA-TAAATAAATTTTAA
8613579 ATATAAAAT
1 ATATAAAAT
8613588 CTTCACCACT
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
32 13 0.37
33 22 0.63
ACGTcount: A:0.54, C:0.04, G:0.04, T:0.38
Consensus pattern (32 bp):
ATATAAAATGAATGTATATAAATAAATTTTAA
Found at i:8619223 original size:26 final size:25
Alignment explanation
Indices: 8619194--8619262 Score: 93
Period size: 25 Copynumber: 2.7 Consensus size: 25
8619184 CTCATACGAG
* *
8619194 CATATAAACGGGAAGCTCTTTTGAGC
1 CATAT-AACGGGAAGCTCATGTGAGC
8619220 CATATAACGGGAAGCTCATGTGAGC
1 CATATAACGGGAAGCTCATGTGAGC
*
8619245 CATGTAACGGGGAAGCTC
1 CATATAAC-GGGAAGCTC
8619263 CGGAGAGCCA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
25 25 0.64
26 14 0.36
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (25 bp):
CATATAACGGGAAGCTCATGTGAGC
Found at i:8619270 original size:26 final size:25
Alignment explanation
Indices: 8619216--8619273 Score: 71
Period size: 26 Copynumber: 2.3 Consensus size: 25
8619206 AAGCTCTTTT
* *
8619216 GAGCCATATAACGGGAAGCTCATGT
1 GAGCCATATAACGGGAAGCTCAGGA
* *
8619241 GAGCCATGTAACGGGGAAGCTCCGGA
1 GAGCCATATAAC-GGGAAGCTCAGGA
8619267 GAGCCAT
1 GAGCCAT
8619274 TAATGGAAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
25 11 0.39
26 17 0.61
ACGTcount: A:0.29, C:0.22, G:0.33, T:0.16
Consensus pattern (25 bp):
GAGCCATATAACGGGAAGCTCAGGA
Found at i:8622448 original size:19 final size:19
Alignment explanation
Indices: 8622422--8622459 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
8622412 TAAATAAATA
8622422 AATAAATAATATTT-TTGG
1 AATAAATAATATTTATTGG
*
8622440 AATAGAATATTATTTATTGG
1 AATA-AATAATATTTATTGG
8622460 GTTGGTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 9 0.53
20 4 0.24
ACGTcount: A:0.42, C:0.00, G:0.13, T:0.45
Consensus pattern (19 bp):
AATAAATAATATTTATTGG
Found at i:8625974 original size:41 final size:42
Alignment explanation
Indices: 8625929--8626015 Score: 149
Period size: 42 Copynumber: 2.1 Consensus size: 42
8625919 GCAAATTTAA
* *
8625929 TGCCCGTTATTC-ACATCGTCATTTTAGTTTCGCACACTTAG
1 TGCCCGTTACTCAACATCATCATTTTAGTTTCGCACACTTAG
8625970 TGCCCGTTACTCAACATCATCATTTTAGTTTCGCACACTTAG
1 TGCCCGTTACTCAACATCATCATTTTAGTTTCGCACACTTAG
8626012 TGCC
1 TGCC
8626016 ATTCATATAG
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
41 11 0.26
42 32 0.74
ACGTcount: A:0.21, C:0.29, G:0.14, T:0.37
Consensus pattern (42 bp):
TGCCCGTTACTCAACATCATCATTTTAGTTTCGCACACTTAG
Found at i:8626130 original size:2 final size:2
Alignment explanation
Indices: 8626123--8626155 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
8626113 TCGGCTACAT
*
8626123 AC AC AC AC AC AC AC AC AC AC AA AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
8626156 TATATATATA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.55, C:0.45, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:8626160 original size:2 final size:2
Alignment explanation
Indices: 8626155--8626180 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8626145 ACACACACAC
8626155 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
8626181 TTGCATATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8630111 original size:2 final size:2
Alignment explanation
Indices: 8630100--8630146 Score: 51
Period size: 2 Copynumber: 24.0 Consensus size: 2
8630090 AGATCATTAA
* * * *
8630100 AT AT -T AT AT AT AT AC AT AT AT AT AT AT AT AT GT AT GT AT GT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8630141 AT AT AT
1 AT AT AT
8630147 GTTTTATTTA
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8634455 original size:22 final size:22
Alignment explanation
Indices: 8634431--8634473 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
8634421 TATGAAGTAA
*
8634431 TTTACAAATTTATACTATTTTAT
1 TTTACAAAATTATA-TATTTTAT
*
8634454 TTTCCAAAATTATATATTTT
1 TTTACAAAATTATATATTTT
8634474 TAGCATGTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.35, C:0.09, G:0.00, T:0.56
Consensus pattern (22 bp):
TTTACAAAATTATATATTTTAT
Found at i:8646815 original size:41 final size:41
Alignment explanation
Indices: 8646769--8646855 Score: 131
Period size: 42 Copynumber: 2.1 Consensus size: 41
8646759 CATTTAATGC
** *
8646769 CCATTATTC-ACATCGTCATTTTAGTTTCGCACACTTAGTG
1 CCATTATTCAACATCACCATTTTAGTTTCGCACAATTAGTG
8646809 CTCATTATTCAACATCACCATTTTAGTTTCGCACAATTAGTG
1 C-CATTATTCAACATCACCATTTTAGTTTCGCACAATTAGTG
8646851 CCATT
1 CCATT
8646856 CATATAGCCG
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
40 1 0.02
41 12 0.29
42 29 0.69
ACGTcount: A:0.25, C:0.25, G:0.10, T:0.39
Consensus pattern (41 bp):
CCATTATTCAACATCACCATTTTAGTTTCGCACAATTAGTG
Found at i:8646983 original size:2 final size:2
Alignment explanation
Indices: 8646978--8647005 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
8646968 ACACACACAG
8646978 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8647006 TTGCATATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8649874 original size:21 final size:20
Alignment explanation
Indices: 8649836--8649875 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
8649826 TTATTTAAAA
*
8649836 TATTTTTAAAATACTTTTTT
1 TATTTTTAAAATAATTTTTT
8649856 TATTTTTAAAATAAATTTTT
1 TATTTTTAAAAT-AATTTTT
8649876 GGTGTTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (20 bp):
TATTTTTAAAATAATTTTTT
Found at i:8650124 original size:3 final size:3
Alignment explanation
Indices: 8650116--8650149 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
8650106 TATGAAAGTA
8650116 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
8650150 TGATATGCAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:8650639 original size:22 final size:23
Alignment explanation
Indices: 8650607--8650649 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
8650597 TAAACGTACA
*
8650607 AAATAACTACAA-ATATAATTCC
1 AAATAACTACAAGATAGAATTCC
*
8650629 AAATAATTACAAGATAGAATT
1 AAATAACTACAAGATAGAATT
8650650 TAATTAAGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.56, C:0.12, G:0.05, T:0.28
Consensus pattern (23 bp):
AAATAACTACAAGATAGAATTCC
Found at i:8653833 original size:109 final size:107
Alignment explanation
Indices: 8653634--8653829 Score: 295
Period size: 109 Copynumber: 1.8 Consensus size: 107
8653624 ATTTAAGAGA
*
8653634 ATATTTGGCTATTTGGTCAAATGAGAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCGAATT
1 ATATTTGGCTATTTGGTCAAACGAGAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCGAATT
* *
8653699 TCCCAAACGCAAAACATTGCCTTATTTTGAAATTTTATAAGG
66 TCCCAAAAGCAAAACATTACCTTATTTTGAAATTTTATAAGG
** *
8653741 ATATTTGGCTATTTGGTTGAACGAGAAAAATTGAAACCCAGCACATTAGGGCACGTTTTCTCGAA
1 ATATTTGGCTATTTGGTCAAACGAG--AAATCGAAACCCAGCACATTAGGGCACGTTTTCTCGAA
* *
8653806 TTT-CCAAAAGTAAAATATTACCTT
64 TTTCCCAAAAGCAAAACATTACCTT
8653830 TATTATTTTT
Statistics
Matches: 79, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
107 22 0.28
108 17 0.22
109 40 0.51
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.32
Consensus pattern (107 bp):
ATATTTGGCTATTTGGTCAAACGAGAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCGAATT
TCCCAAAAGCAAAACATTACCTTATTTTGAAATTTTATAAGG
Found at i:8661998 original size:4 final size:4
Alignment explanation
Indices: 8661989--8662126 Score: 65
Period size: 4 Copynumber: 33.2 Consensus size: 4
8661979 GGGAAAGGAG
*
8661989 AAGA AAGA AAGA AAG- AA-A AAGA AAGAA AAGGA AAGGA GAGAA AAGA
1 AAGA AAGA AAGA AAGA AAGA AAGA AAG-A AA-GA AA-GA AAG-A AAGA
* *
8662035 AAG- AA-A AAGA AGGA ACGAA AAGGA AAGGA GAAGA AA-A AAGA AAG-
1 AAGA AAGA AAGA AAGA AAG-A AA-GA AA-GA -AAGA AAGA AAGA AAGA
* * *
8662079 AA-A AAGA AGGA AAGAA AAGGA AAGGA GAAGA AAAA AAAA AAGA AAGA
1 AAGA AAGA AAGA AAG-A AA-GA AA-GA -AAGA AAGA AAGA AAGA AAGA
8662126 A
1 A
8662127 GAAGAAGAAG
Statistics
Matches: 109, Mismatches: 9, Indels: 32
0.73 0.06 0.21
Matches are distributed among these distances:
3 15 0.14
4 53 0.49
5 34 0.31
6 7 0.06
ACGTcount: A:0.72, C:0.01, G:0.28, T:0.00
Consensus pattern (4 bp):
AAGA
Found at i:8662009 original size:10 final size:10
Alignment explanation
Indices: 8661996--8662164 Score: 76
Period size: 10 Copynumber: 16.4 Consensus size: 10
8661986 GAGAAGAAAG
8661996 AAAGAAAGAA
1 AAAGAAAGAA
8662006 AAAGAAAGAA
1 AAAGAAAGAA
*
8662016 AAGGAAAGGAGAGA
1 AAAG-AA--AGA-A
8662030 AAAGAAAGAA
1 AAAGAAAGAA
*
8662040 AAAGAAGGAA
1 AAAGAAAGAA
** *
8662050 CGA-AAAGGA
1 AAAGAAAGAA
*
8662059 AAGGAGAAGAAA
1 AAAGA-AAG-AA
8662071 AAAGAAAGAA
1 AAAGAAAGAA
*
8662081 AAAGAAGGAA
1 AAAGAAAGAA
* *
8662091 AGA-AAAGGA
1 AAAGAAAGAA
*
8662100 AAGGAGAAGAA
1 AAAGA-AAGAA
*
8662111 AAA-AAAAAA
1 AAAGAAAGAA
8662120 GAAAG-AAGAA
1 -AAAGAAAGAA
* **
8662130 GAAGAAGAGGG
1 AAAGAA-AGAA
* *
8662141 AAGGAAGGAA
1 AAAGAAAGAA
*
8662151 AAAGAAAAAA
1 AAAGAAAGAA
8662161 AAAG
1 AAAG
8662165 GTGATTTTTT
Statistics
Matches: 113, Mismatches: 33, Indels: 26
0.66 0.19 0.15
Matches are distributed among these distances:
9 16 0.14
10 60 0.53
11 23 0.20
12 5 0.04
13 5 0.04
14 4 0.04
ACGTcount: A:0.70, C:0.01, G:0.29, T:0.00
Consensus pattern (10 bp):
AAAGAAAGAA
Found at i:8662023 original size:38 final size:39
Alignment explanation
Indices: 8661980--8662129 Score: 193
Period size: 38 Copynumber: 3.8 Consensus size: 39
8661970 AGAAGGAGAG
8661980 GGAAAGGAGAAGAAAGAAAGAAAGAAA-AAGAAAGAAAA
1 GGAAAGGAGAAGAAAGAAAGAAAGAAAGAAGAAAGAAAA
*
8662018 GGAAAGGAG-AGAAAAGAAAG-AA-AAAGAAGGAACGAAAA
1 GGAAAGGAGAAG-AAAGAAAGAAAGAAAGAA-GAAAGAAAA
8662056 GGAAAGGAGAAGAAA-AAAGAAAGAAAAAGAAGGAAAGAAAA
1 GGAAAGGAGAAGAAAGAAAGAAAG--AAAGAA-GAAAGAAAA
* *
8662097 GGAAAGGAGAAGAAAAAAAAAAAGAAAGAAGAA
1 GGAAAGGAGAAGAAAGAAAGAAAGAAAGAAGAA
8662130 GAAGAAGAGG
Statistics
Matches: 100, Mismatches: 3, Indels: 17
0.83 0.03 0.14
Matches are distributed among these distances:
36 3 0.03
37 10 0.10
38 39 0.39
39 5 0.05
40 6 0.06
41 30 0.30
42 7 0.07
ACGTcount: A:0.70, C:0.01, G:0.29, T:0.00
Consensus pattern (39 bp):
GGAAAGGAGAAGAAAGAAAGAAAGAAAGAAGAAAGAAAA
Found at i:8662084 original size:41 final size:39
Alignment explanation
Indices: 8661980--8662164 Score: 213
Period size: 41 Copynumber: 4.7 Consensus size: 39
8661970 AGAAGGAGAG
8661980 GGAAAGGAGAAGAAAGAAAGAAAGAAAAAG-A-AAGAAAA
1 GGAAAGGAGAAGAAA-AAAGAAAGAAAAAGAAGAAGAAAA
8662018 GGAAAGGAG-AG--AAAAGAAAGAAAAAGAAGGAACGAAAA
1 GGAAAGGAGAAGAAAAAAGAAAGAAAAAGAA-GAA-GAAAA
8662056 GGAAAGGAGAAGAAAAAAGAAAGAAAAAGAAGGAAAGAAAA
1 GGAAAGGAGAAGAAAAAAGAAAGAAAAAGAA-G-AAGAAAA
* *
8662097 GGAAAGGAGAAGAAAAAAAAAAAGAAAGAAGAAGAAGAAGA
1 GGAAAGGAGAAG-AAAAAAGAAAGAAA-AAGAAGAAGAAAA
* * *
8662138 GGGAA-G-GAAGGAAAAAGAAAAAAAAAG
1 GGAAAGGAGAAGAAAAAAGAAAGAAAAAG
8662165 GTGATTTTTT
Statistics
Matches: 131, Mismatches: 6, Indels: 21
0.83 0.04 0.13
Matches are distributed among these distances:
34 14 0.11
35 2 0.02
37 7 0.05
38 34 0.26
39 6 0.05
40 1 0.01
41 46 0.35
42 16 0.12
43 5 0.04
ACGTcount: A:0.69, C:0.01, G:0.30, T:0.00
Consensus pattern (39 bp):
GGAAAGGAGAAGAAAAAAGAAAGAAAAAGAAGAAGAAAA
Found at i:8663320 original size:159 final size:154
Alignment explanation
Indices: 8662946--8663410 Score: 527
Period size: 156 Copynumber: 3.0 Consensus size: 154
8662936 AATGGTATAT
* *
8662946 TTAAAAAACACACTAAATTAATAAATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAA
1 TTAAAAAACACACTAAATTAATAAATTTCAAACATAATGTAATGAAATAATGTAAAATAATAAAA
* * *
8663011 TTAGAAAATATGATATTTTTA---AAAGTAATAAAATGCGGAGAAAAAAATATGAACAAAGGGTC
66 TTAGAAAATATGATATTTTTATTGAAAGTAATAAAATTCGG-GAAAATAATACGAACAAAGGGTC
8663073 GAAGTAAGAGTTTTTTACTAAATTT-
130 GAAGTAAGAGTTTTTTAC-AAATTTA
* * * * *
8663098 TTAAAAATTCAGA-AATAATTAATACAAATATATCAAACAAAATGTAATG-AATAATATAAAATA
1 TTAAAAA-ACACACTA-AATTAAT--AAAT-T-TCAAACATAATGTAATGAAATAATGTAAAATA
* * *
8663161 AGAAAATAAGAAAATAAT-ATATTTTTATTGAAAGTAATAAAATTCGGGAAAATAATACGAGCAA
60 ATAAAATTAGAAAAT-ATGATATTTTTATTGAAAGTAATAAAATTCGGGAAAATAATACGAACAA
*
8663225 AGGG-CAGGAA-TAAGGATTTTTTTTA-AAATTTA
124 AGGGTC--GAAGTAA-GA-GTTTTTTACAAATTTA
8663257 TTCAAAAAACACACTAAATTAATAAATTTCAAACATAATGTAATGAAATAATGTAAAATAATAAA
1 TT-AAAAAACACACTAAATTAATAAATTTCAAACATAATGTAATGAAATAATGTAAAATAATAAA
* * * * * *
8663322 ATTAGAAAATATGATATTTTTATTGAAAGCAATAAAATTCAGGAAAATAGTACGAATAAATGGCC
65 ATTAGAAAATATGATATTTTTATTGAAAGTAATAAAATTCGGGAAAATAATACGAACAAAGGGTC
* * *
8663387 GAAATAAGGGTTTTTTACTAATTT
130 GAAGTAAGAGTTTTTTACAAATTT
8663411 TTTTTTTTGA
Statistics
Matches: 261, Mismatches: 30, Indels: 41
0.79 0.09 0.12
Matches are distributed among these distances:
152 8 0.03
153 10 0.04
154 7 0.03
155 31 0.12
156 110 0.42
157 22 0.08
158 27 0.10
159 33 0.13
160 13 0.05
ACGTcount: A:0.52, C:0.06, G:0.11, T:0.30
Consensus pattern (154 bp):
TTAAAAAACACACTAAATTAATAAATTTCAAACATAATGTAATGAAATAATGTAAAATAATAAAA
TTAGAAAATATGATATTTTTATTGAAAGTAATAAAATTCGGGAAAATAATACGAACAAAGGGTCG
AAGTAAGAGTTTTTTACAAATTTA
Found at i:8665606 original size:18 final size:18
Alignment explanation
Indices: 8665585--8665620 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
8665575 TCGTCAATAT
8665585 CATCAGGTACATCGTCCA
1 CATCAGGTACATCGTCCA
8665603 CATCAGGTACATCGTCCA
1 CATCAGGTACATCGTCCA
8665621 TCGTTCTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.33, G:0.17, T:0.22
Consensus pattern (18 bp):
CATCAGGTACATCGTCCA
Found at i:8665814 original size:3 final size:3
Alignment explanation
Indices: 8665806--8665835 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
8665796 CCTTAAAAAC
8665806 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
8665836 CTAAAACTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:8677012 original size:27 final size:27
Alignment explanation
Indices: 8676982--8677041 Score: 93
Period size: 27 Copynumber: 2.2 Consensus size: 27
8676972 GTGGCAGAGG
* *
8676982 CGGCATCGTTGGTGCCCCTGCCACAAA
1 CGGCACCGATGGTGCCCCTGCCACAAA
*
8677009 CGGCACCGATGGTGCCCCTGCCACAGA
1 CGGCACCGATGGTGCCCCTGCCACAAA
8677036 CGGCAC
1 CGGCAC
8677042 TGCCCCTATA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.18, C:0.40, G:0.28, T:0.13
Consensus pattern (27 bp):
CGGCACCGATGGTGCCCCTGCCACAAA
Found at i:8677113 original size:4 final size:4
Alignment explanation
Indices: 8677098--8677275 Score: 77
Period size: 4 Copynumber: 43.0 Consensus size: 4
8677088 ATGAGAGGGA
*
8677098 AAAG AGAAG AAAG AAAG AAAG AAAG -AA- AAAG AAATA AAAGG AAAGG
1 AAAG A-AAG AAAG AAAG AAAG AAAG AAAG AAAG AAA-G AAA-G AAA-G
* *
8677144 AGAGG AAAG AAAG -AA- AAAG AAGG AAAG AAAAGG AAATG AGAAG AAA-
1 A-AAG AAAG AAAG AAAG AAAG AAAG AAAG -AAA-G AAA-G A-AAG AAAG
* *
8677190 AAAG AAAG -AA- AAAG AAGG AAAG AAAAGG AAATG AGAAG AAA- AAAA
1 AAAG AAAG AAAG AAAG AAAG AAAG -AAA-G AAA-G A-AAG AAAG AAAG
* * * *
8677235 AAAG AAAG AAGAGG GAAG GAAG GAA- AAAG AAAG AAAA AAAG
1 AAAG AAAG AA-A-G AAAG AAAG AAAG AAAG AAAG AAAG AAAG
8677276 GTAATTTTTT
Statistics
Matches: 138, Mismatches: 16, Indels: 40
0.71 0.08 0.21
Matches are distributed among these distances:
3 20 0.14
4 72 0.52
5 37 0.27
6 9 0.07
ACGTcount: A:0.70, C:0.00, G:0.28, T:0.02
Consensus pattern (4 bp):
AAAG
Found at i:8677128 original size:10 final size:10
Alignment explanation
Indices: 8677104--8677272 Score: 85
Period size: 10 Copynumber: 16.2 Consensus size: 10
8677094 GGGAAAAGAG
8677104 AAGAAAGAAAGA
1 AAGAAAG-AA-A
8677116 AAGAAAGAAA
1 AAGAAAGAAA
*
8677126 AAGAAATAAA
1 AAGAAAGAAA
*
8677136 AGGAAAGGAGAGGA
1 AAGAAA-GA-A--A
8677150 AAGAAAGAAA
1 AAGAAAGAAA
*
8677160 AAGAAGGAAA
1 AAGAAAGAAA
* *
8677170 GA-AAAGGAA
1 AAGAAAGAAA
*
8677179 ATGAGAAGAAAA
1 AAGA-AAG-AAA
8677191 AAGAAAGAAA
1 AAGAAAGAAA
*
8677201 AAGAAGGAAA
1 AAGAAAGAAA
* *
8677211 GA-AAAGGAA
1 AAGAAAGAAA
*
8677220 ATGAGAAGAAA
1 AAGA-AAGAAA
8677231 AA-AAA-AAGA
1 AAGAAAGAA-A
**
8677240 AAGAAGAGGGA
1 AAGAA-AGAAA
* *
8677251 AGGAAGGAAA
1 AAGAAAGAAA
8677261 AAGAAAGAAA
1 AAGAAAGAAA
8677271 AA
1 AA
8677273 AAGGTAATTT
Statistics
Matches: 116, Mismatches: 28, Indels: 28
0.67 0.16 0.16
Matches are distributed among these distances:
8 2 0.02
9 15 0.13
10 56 0.48
11 21 0.18
12 14 0.12
13 2 0.02
14 6 0.05
ACGTcount: A:0.70, C:0.00, G:0.28, T:0.02
Consensus pattern (10 bp):
AAGAAAGAAA
Found at i:8677201 original size:41 final size:42
Alignment explanation
Indices: 8677095--8677251 Score: 200
Period size: 41 Copynumber: 3.9 Consensus size: 42
8677085 AGAATGAGAG
* * *
8677095 GGAAAAGAGAAGAAAGAAAGAAAGAAAGAA-AAAGAAATAAAA
1 GGAAATGAGAAGAAA-AAAGAAAGAAAGAAGAAGGAAAGAAAA
**
8677137 GGAAA-G-G-AGAGGAAAGAAAGAAA-AAGAAGGAAAGAAAA
1 GGAAATGAGAAGAAAAAAGAAAGAAAGAAGAAGGAAAGAAAA
8677175 GGAAATGAGAAGAAAAAAGAAAGAAA-AAGAAGGAAAGAAAA
1 GGAAATGAGAAGAAAAAAGAAAGAAAGAAGAAGGAAAGAAAA
* *
8677216 GGAAATGAGAAGAAAAAAAAAAGAAAGAAGAGGGAA
1 GGAAATGAGAAGAAAAAAGAAAGAAAGAAGAAGGAA
8677252 GGAAGGAAAA
Statistics
Matches: 102, Mismatches: 8, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
37 2 0.02
38 26 0.25
39 4 0.04
40 2 0.02
41 55 0.54
42 13 0.13
ACGTcount: A:0.69, C:0.00, G:0.29, T:0.02
Consensus pattern (42 bp):
GGAAATGAGAAGAAAAAAGAAAGAAAGAAGAAGGAAAGAAAA
Found at i:8677273 original size:41 final size:40
Alignment explanation
Indices: 8677149--8677274 Score: 135
Period size: 41 Copynumber: 3.0 Consensus size: 40
8677139 AAAGGAGAGG
* *
8677149 AAAGAAAGAAAAAGAAGGAAAGAAAAGGAAATGAGAAGAAA
1 AAAGAAAGAAAAAGAAGGAAAGAAAAGGAAA-GAAAAAAAA
8677190 AAAGAAAGAAAAAGAAGGAAAGAAAAGGAAATGAGAAGAAAAAAA
1 AAAGAAAGAAAAAGAAGGAAAGAAAAGG-AA--AG-A-AAAAAAA
** * *
8677235 AAAGAAAGAAGAGGGAAGGAAGGAAAAAGAAAGAAAAAAA
1 AAAGAAAGAA-AAAGAAGGAAAGAAAAGGAAAGAAAAAAA
8677275 GGTAATTTTT
Statistics
Matches: 73, Mismatches: 6, Indels: 12
0.80 0.07 0.13
Matches are distributed among these distances:
41 34 0.47
42 3 0.04
43 3 0.04
44 2 0.03
45 17 0.23
46 14 0.19
ACGTcount: A:0.71, C:0.00, G:0.27, T:0.02
Consensus pattern (40 bp):
AAAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGAAAAAAAA
Found at i:8677839 original size:16 final size:15
Alignment explanation
Indices: 8677813--8677842 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
8677803 GTACTAAAAT
8677813 AATATAAAATAATAA
1 AATATAAAATAATAA
8677828 AATATGAAAATAATA
1 AATAT-AAAATAATA
8677843 TATTTTTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (15 bp):
AATATAAAATAATAA
Found at i:8678125 original size:157 final size:156
Alignment explanation
Indices: 8677622--8678391 Score: 819
Period size: 157 Copynumber: 4.9 Consensus size: 156
8677612 AAACACACTA
*
8677622 AATTAAT--AAATTTCAAACATAATATACTAAAATAATGTAAAATAATAAAAT-TAGAAAAT-AT
1 AATTAATACAAATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATAT-GAAAATAAT
* * *
8677683 GATA-TTTT-TT-AAAGTAATAAAATGTGGAGATAAA-AATACAAACAAAGGGTCGAAGTAAGAG
65 -ATATTTTTATTGAAAGTAATAAAAT-TGGAGA-AAATAATACGAACAAA-GGCCGAAATAAGAG
*
8677744 TTTTTTACTAAATTTTTTAAAAATTCAGAAAT
126 -TTTTTACTAAATTTTTTAAAAATACAGAAAT
* *
8677776 AATTAATACAAATATTTCAAACAAAATGTACTAAAATAATATAAAATAATAAAATATGAAAATAA
1 AATTAATAC-AA-ATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATATGAAAATAA
** * * *
8677841 TATATTTTTATTGAAAGTAATAAAATTCGG-GAAAATAATACGAGTAAAGGGCAATAATAAGGGT
64 TATATTTTTATTGAAAGTAATAAAATT-GGAGAAAATAATACGAACAAAGGCCGA-AATAAGAGT
** * *
8677905 TTTTTTTAAATTTATTTAAAAA-ACA-CACT
127 TTTTACTAAATTT-TTTAAAAATACAGAAAT
* *
8677934 AAATTAAT--AAATTTCAAACATAATATACTGAAATAATGTAAAATAATAAAAT-TAGAAAAT-A
1 -AATTAATACAAATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATAT-GAAAATAA
* *
8677995 TGATATTTTT-TT-AAAGTAATAAAATGTGGAGAAAAAAATACGAACAAAGGACCGAAGTAAGAG
64 T-ATATTTTTATTGAAAGTAATAAAAT-TGGAGAAAATAATACGAACAAAGG-CCGAAATAAGAG
*
8678058 -TTTTACTAAATTTTTTAAAAATTCAGAAAT
126 TTTTTACTAAATTTTTTAAAAATACAGAAAT
* * *
8678088 AATTAATACAAATATTTCAAAC-TAAATGTACTGAAATAATATAAAATAATAAAATACGAAAATA
1 AATTAATAC-AA-ATTTCAAACAT-AATGTACTAAAATAATGTAAAATAATAAAATATGAAAATA
* * * *
8678152 ATATATTTTTATTGAAAGTAATAAAATTCGAGAAAATAATACGAGCAAAGGGCAGGAATAAGAGT
63 ATATATTTTTATTGAAAGTAATAAAATTGGAGAAAATAATACGAACAAA-GGCCGAAATAAGAG-
* *
8678217 TTTTTACTAAATTTTTTAAAAAAAAAAGAAAT
126 TTTTTACTAAATTTTTT-AAAAATACAGAAAT
* **
8678249 AATTAATAC--ACTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATATGAATGTAATA
1 AATTAATACAAATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATATGAAAATAATA
* * *
8678312 TATTTTTATTGAAAGTAATAAAATTCGG-GAAAATAGTACGAATAAATGGCCGAAATAAGGGTGT
66 TATTTTTATTGAAAGTAATAAAATT-GGAGAAAATAATACGAACAAA-GGCCGAAATAAGAGT-T
*
8678376 TGTACTAAAATTTTTT
128 TTTACT-AAATTTTTT
8678392 TGAACTTACA
Statistics
Matches: 520, Mismatches: 58, Indels: 72
0.80 0.09 0.11
Matches are distributed among these distances:
152 8 0.02
153 35 0.07
154 38 0.07
155 54 0.10
156 6 0.01
157 157 0.30
158 93 0.18
159 50 0.10
160 44 0.08
161 35 0.07
ACGTcount: A:0.51, C:0.06, G:0.11, T:0.32
Consensus pattern (156 bp):
AATTAATACAAATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATATGAAAATAATA
TATTTTTATTGAAAGTAATAAAATTGGAGAAAATAATACGAACAAAGGCCGAAATAAGAGTTTTT
ACTAAATTTTTTAAAAATACAGAAAT
Found at i:8678170 original size:312 final size:312
Alignment explanation
Indices: 8677604--8678391 Score: 1149
Period size: 312 Copynumber: 2.5 Consensus size: 312
8677594 AAAAATGGTA
8677604 TATTTAAAAAACACACTAAATTAATAAATTTCAAACATAATATACTAAAATAATGTAAAATAATA
1 TATTTAAAAAACACACTAAATTAATAAATTTCAAACATAATATACTAAAATAATGTAAAATAATA
* * *
8677669 AAATTAGAAAATATGATA-TTTTTTAAAGTAATAAAATGTGGAGATAAAAATACAAACAAAGGGT
66 AAATTAGAAAATATGATATTTTTTTAAAGTAATAAAATGTGGAGAAAAAAATACGAACAAA-GGC
8677733 CGAAGTAAGAGTTTTTTACTAAATTTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAAC
130 CGAAGTAAGAG--TTTTACTAAATTTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAAC
*
8677798 AAAATGTACTAAAATAATATAAAATAATAAAATATGAAAATAATATATTTTTATTGAAAGTAATA
193 AAAATGTACTAAAATAATATAAAATAATAAAATACGAAAATAATATATTTTTATTGAAAGTAATA
* * * * *
8677863 AAATTCGGGAAAATAATACGAGTAAAGGGCAATAATAAGGGTTTTTT-TTAAATT
258 AAATTCGAGAAAATAATACGAGCAAAGGGCAAGAATAAGAGTTTTTTACTAAATT
*
8677917 TATTTAAAAAACACACTAAATTAATAAATTTCAAACATAATATACTGAAATAATGTAAAATAATA
1 TATTTAAAAAACACACTAAATTAATAAATTTCAAACATAATATACTAAAATAATGTAAAATAATA
8677982 AAATTAGAAAATATGATATTTTTTTAAAGTAATAAAATGTGGAGAAAAAAATACGAACAAAGGAC
66 AAATTAGAAAATATGATATTTTTTTAAAGTAATAAAATGTGGAGAAAAAAATACGAACAAAGG-C
*
8678047 CGAAGTAAGAGTTTTACTAAATTTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACTA
130 CGAAGTAAGAGTTTTACTAAATTTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAA
*
8678112 AATGTACTGAAATAATATAAAATAATAAAATACGAAAATAATATATTTTTATTGAAAGTAATAAA
195 AATGTACTAAAATAATATAAAATAATAAAATACGAAAATAATATATTTTTATTGAAAGTAATAAA
*
8678177 ATTCGAGAAAATAATACGAGCAAAGGGCAGGAATAAGAGTTTTTTACTAAATT
260 ATTCGAGAAAATAATACGAGCAAAGGGCAAGAATAAGAGTTTTTTACTAAATT
* * ** * * *
8678230 T-TTTAAAAAAAAAAGAAATAATTAATACACTTCAAACATAATGTACTAAAATAATGTAAAATAA
1 TATTTAAAAAACACA-CTA-AATTAATAAATTTCAAACATAATATACTAAAATAATGTAAAATAA
** * * *
8678294 TAAAA-TATGAATGTAAT-ATATTTTTATTGAAAGTAATAAAAT-TCGG-GAAAATAGTACGAAT
64 TAAAATTA-GAAAAT-ATGATATTTTT-TT-AAAGTAATAAAATGT-GGAGAAAAAAATACGAAC
* *
8678355 AAATGGCCGAAATAAGGGTGTTGTACTAAAATTTTTT
124 AAA-GGCCGAAGTAAGAGT-TT-TACT-AAATTTTTT
8678392 TGAACTTACA
Statistics
Matches: 433, Mismatches: 28, Indels: 23
0.89 0.06 0.05
Matches are distributed among these distances:
312 167 0.39
313 94 0.22
314 109 0.25
315 31 0.07
316 19 0.04
317 4 0.01
318 9 0.02
ACGTcount: A:0.52, C:0.06, G:0.11, T:0.31
Consensus pattern (312 bp):
TATTTAAAAAACACACTAAATTAATAAATTTCAAACATAATATACTAAAATAATGTAAAATAATA
AAATTAGAAAATATGATATTTTTTTAAAGTAATAAAATGTGGAGAAAAAAATACGAACAAAGGCC
GAAGTAAGAGTTTTACTAAATTTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAAA
ATGTACTAAAATAATATAAAATAATAAAATACGAAAATAATATATTTTTATTGAAAGTAATAAAA
TTCGAGAAAATAATACGAGCAAAGGGCAAGAATAAGAGTTTTTTACTAAATT
Found at i:8683321 original size:23 final size:23
Alignment explanation
Indices: 8683276--8683322 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
8683266 TAAAAATAAT
*
8683276 AACTAACAATAATATAATGTAAA
1 AACTAACAATAATATAATCTAAA
*
8683299 AACTAACAATCATACTAA-CTAAA
1 AACTAACAATAATA-TAATCTAAA
8683322 A
1 A
8683323 TAATAATTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 18 0.86
24 3 0.14
ACGTcount: A:0.60, C:0.15, G:0.02, T:0.23
Consensus pattern (23 bp):
AACTAACAATAATATAATCTAAA
Found at i:8713349 original size:3 final size:3
Alignment explanation
Indices: 8713341--8713373 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
8713331 TCACTAGGTG
*
8713341 GAT GAT GAT GGT GAT GAT GAT GAT GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
8713374 CAGGTCCGAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.30, C:0.00, G:0.36, T:0.33
Consensus pattern (3 bp):
GAT
Found at i:8724819 original size:19 final size:19
Alignment explanation
Indices: 8724787--8724832 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
8724777 GTTGTTTTCT
* *
8724787 CTTTTAATTTGCAGCCTTC
1 CTTTTGATTCGCAGCCTTC
* *
8724806 CTTTTGATTCGCAGGCTTT
1 CTTTTGATTCGCAGCCTTC
8724825 CTTTTGAT
1 CTTTTGAT
8724833 CTTGTTTTGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.13, C:0.22, G:0.15, T:0.50
Consensus pattern (19 bp):
CTTTTGATTCGCAGCCTTC
Found at i:8734698 original size:30 final size:30
Alignment explanation
Indices: 8734634--8734699 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
8734624 GGGAATCTGA
* *
8734634 GATAAAGTTTCTAAAATCCCAAAATCCTAT
1 GATAAAGTTTCTAAAATCCCAAAATCCCAC
* *
8734664 GATAAAGTTTCTGAAA-CCCAAAAATCCCGC
1 GATAAAGTTTCTAAAATCCC-AAAATCCCAC
8734694 GATAAA
1 GATAAA
8734700 ATTTACATCC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 3 0.10
30 28 0.90
ACGTcount: A:0.44, C:0.21, G:0.11, T:0.24
Consensus pattern (30 bp):
GATAAAGTTTCTAAAATCCCAAAATCCCAC
Found at i:8737006 original size:19 final size:19
Alignment explanation
Indices: 8736979--8737022 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
8736969 CTCAGAAATT
*
8736979 TTTTTCCAAAATTTCAAAA
1 TTTTCCCAAAATTTCAAAA
*
8736998 TTTTCCCAAAATTTTAAAA
1 TTTTCCCAAAATTTCAAAA
8737017 TTTTCC
1 TTTTCC
8737023 TTAGGTGCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.36, C:0.18, G:0.00, T:0.45
Consensus pattern (19 bp):
TTTTCCCAAAATTTCAAAA
Found at i:8738086 original size:21 final size:21
Alignment explanation
Indices: 8738062--8738133 Score: 81
Period size: 21 Copynumber: 3.4 Consensus size: 21
8738052 ACAGAAGTGC
8738062 TAAACAGAAACCCATAAGGGT
1 TAAACAGAAACCCATAAGGGT
* * * * *
8738083 TAAACGGAAGCTCATAAGAGC
1 TAAACAGAAACCCATAAGGGT
* *
8738104 TGAACAGAAACCCATAAAGGT
1 TAAACAGAAACCCATAAGGGT
8738125 TAAACAGAA
1 TAAACAGAA
8738134 GCTCAAAAGA
Statistics
Matches: 38, Mismatches: 13, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.49, C:0.18, G:0.19, T:0.14
Consensus pattern (21 bp):
TAAACAGAAACCCATAAGGGT
Found at i:8738111 original size:42 final size:42
Alignment explanation
Indices: 8738036--8738154 Score: 150
Period size: 42 Copynumber: 2.9 Consensus size: 42
8738026 CAGAAGCCCG
* * * * *
8738036 AAGGTTGAACAGAAGCACAGAAGTGCTAAACAGAAACCCATA
1 AAGGTTAAACAGAAGCTCAAAAGAGCTGAACAGAAACCCATA
* * *
8738078 AGGGTTAAACGGAAGCTCATAAGAGCTGAACAGAAACCCATA
1 AAGGTTAAACAGAAGCTCAAAAGAGCTGAACAGAAACCCATA
*
8738120 AAGGTTAAACAGAAGCTCAAAAGATCTGAAC-GAAA
1 AAGGTTAAACAGAAGCTCAAAAGAGCTGAACAGAAA
8738155 ACTTATATGA
Statistics
Matches: 66, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
41 4 0.06
42 62 0.94
ACGTcount: A:0.47, C:0.18, G:0.22, T:0.13
Consensus pattern (42 bp):
AAGGTTAAACAGAAGCTCAAAAGAGCTGAACAGAAACCCATA
Found at i:8739909 original size:20 final size:20
Alignment explanation
Indices: 8739884--8739957 Score: 79
Period size: 20 Copynumber: 4.0 Consensus size: 20
8739874 CGTAAAATGA
8739884 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGTTTTACT
*
8739904 TTTCTGTAAAATG----A--
1 TTTCTGGAAAATGTTTTACT
8739918 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGTTTTACT
* *
8739938 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGTTTTACT
8739958 GGAAAATATT
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
14 12 0.27
16 1 0.02
18 1 0.02
20 30 0.68
ACGTcount: A:0.28, C:0.09, G:0.14, T:0.49
Consensus pattern (20 bp):
TTTCTGGAAAATGTTTTACT
Found at i:8739913 original size:34 final size:34
Alignment explanation
Indices: 8739869--8739969 Score: 175
Period size: 34 Copynumber: 2.9 Consensus size: 34
8739859 CAGTAAAATG
*
8739869 TTTTCCGTAAAATGATTTCTGGAAAATGTTTTAC
1 TTTTCTGTAAAATGATTTCTGGAAAATGTTTTAC
8739903 TTTTCTGTAAAATGATTTCTGGAAAATGTTTTAC
1 TTTTCTGTAAAATGATTTCTGGAAAATGTTTTAC
*
8739937 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCTGTAAAATGATTT-CTGGAAAATGTTTT
8739970 CTGGTGTTTG
Statistics
Matches: 64, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
34 51 0.80
35 13 0.20
ACGTcount: A:0.31, C:0.09, G:0.14, T:0.47
Consensus pattern (34 bp):
TTTTCTGTAAAATGATTTCTGGAAAATGTTTTAC
Found at i:8739973 original size:14 final size:15
Alignment explanation
Indices: 8739863--8739973 Score: 59
Period size: 14 Copynumber: 7.0 Consensus size: 15
8739853 GATTGCCAGT
* *
8739863 AAAATG-TTTTCCGT
1 AAAATGATTTTCTGG
8739877 AAAATGA-TTTCTGG
1 AAAATGATTTTCTGG
*
8739891 AAAATGTTTTACTTTTCTGT
1 AAAATG----A-TTTTCTGG
8739911 AAAATGA-TTTCTGG
1 AAAATGATTTTCTGG
*
8739925 AAAATGTTTTACTTTTCTGT
1 AAAATG----A-TTTTCTGG
*
8739945 AAAATGATTTACTGG
1 AAAATGATTTTCTGG
8739960 AAAAT-ATTTTCTGG
1 AAAATGATTTTCTGG
8739974 TGTTTGATTG
Statistics
Matches: 76, Mismatches: 8, Indels: 26
0.69 0.07 0.24
Matches are distributed among these distances:
14 37 0.49
15 11 0.14
16 2 0.03
18 2 0.03
20 24 0.32
ACGTcount: A:0.32, C:0.09, G:0.15, T:0.44
Consensus pattern (15 bp):
AAAATGATTTTCTGG
Found at i:8740328 original size:26 final size:26
Alignment explanation
Indices: 8740295--8740352 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
8740285 ATATCAAAAT
8740295 TTATAGAGACCAATTTAAAATCTAGA
1 TTATAGAGACCAATTTAAAATCTAGA
*
8740321 TTATAGAGACCAATTTAATATCTAGA
1 TTATAGAGACCAATTTAAAATCTAGA
8740347 TTATAG
1 TTATAG
8740353 TTTGAGGATG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.43, C:0.10, G:0.12, T:0.34
Consensus pattern (26 bp):
TTATAGAGACCAATTTAAAATCTAGA
Found at i:8742465 original size:27 final size:27
Alignment explanation
Indices: 8742427--8742525 Score: 96
Period size: 27 Copynumber: 3.6 Consensus size: 27
8742417 AAATCTTTCT
8742427 AACTATGGACAAGAAACCGATTCACAA
1 AACTATGGACAAGAAACCGATTCACAA
* * *
8742454 AACTATGGACAAGAAACCAATAACATAAA
1 AACTATGGACAAGAAACCGAT-TCA-CAA
*
8742483 GGAACTA---ACCCAGAAACCGATTCACAA
1 --AACTATGGA-CAAGAAACCGATTCACAA
8742510 AACTATGGACAAGAAA
1 AACTATGGACAAGAAA
8742526 ATATACCTTT
Statistics
Matches: 56, Mismatches: 8, Indels: 16
0.70 0.10 0.20
Matches are distributed among these distances:
25 5 0.09
27 28 0.50
28 6 0.11
29 12 0.21
31 5 0.09
ACGTcount: A:0.52, C:0.21, G:0.14, T:0.13
Consensus pattern (27 bp):
AACTATGGACAAGAAACCGATTCACAA
Found at i:8742958 original size:14 final size:14
Alignment explanation
Indices: 8742936--8742966 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
8742926 CATTGGAAAA
*
8742936 TCCGTAAAATATTT
1 TCCGGAAAATATTT
8742950 TCCGGAAAATATTT
1 TCCGGAAAATATTT
8742964 TCC
1 TCC
8742967 ACCAATCAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.32, C:0.19, G:0.10, T:0.39
Consensus pattern (14 bp):
TCCGGAAAATATTT
Found at i:8743957 original size:20 final size:20
Alignment explanation
Indices: 8743932--8743979 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
8743922 AACTACAATC
*
8743932 AAAGAAA-ACAAATAATAAAG
1 AAAGAAAGA-AAATAAAAAAG
8743952 AAAGAAAGAAAATAAAAAAG
1 AAAGAAAGAAAATAAAAAAG
*
8743972 GAAGAAAG
1 AAAGAAAG
8743980 TCTCTTACTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 24 0.96
21 1 0.04
ACGTcount: A:0.75, C:0.02, G:0.17, T:0.06
Consensus pattern (20 bp):
AAAGAAAGAAAATAAAAAAG
Found at i:8746743 original size:6 final size:6
Alignment explanation
Indices: 8746732--8746793 Score: 115
Period size: 6 Copynumber: 10.3 Consensus size: 6
8746722 TTAAGTCCTT
8746732 TACAGA TACAGA TACAGA TACAGA TACAGA TACAGA TACAGA TACAGA
1 TACAGA TACAGA TACAGA TACAGA TACAGA TACAGA TACAGA TACAGA
*
8746780 TACAGA TAAAGA TA
1 TACAGA TACAGA TA
8746794 TGCAGAACAA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 55 1.00
ACGTcount: A:0.52, C:0.15, G:0.16, T:0.18
Consensus pattern (6 bp):
TACAGA
Found at i:8748046 original size:242 final size:240
Alignment explanation
Indices: 8747623--8748071 Score: 697
Period size: 242 Copynumber: 1.9 Consensus size: 240
8747613 CCCGAACGAT
* * ** * **
8747623 TCCGACTATGATTTCGCGAGAGGAGAGTCCTGTTCTTCACAATTTGCTGTTGTCAAAAACCCAAA
1 TCCGACTACGATTCCGCGAGAGGAGAGTCCCATTCTTCACAATTTGATACTGTCAAAAACCCAAA
*
8747688 AGAAATCAACTAACGAAACAGACAACAACACTAAAAACAGCATTAAAAGAAACTTCCCTAACTCA
66 AAAAATCAACTAACGAAACAGACAACAACACTAAAAACAGCATTAAAAGAAACTTCCCTAACTCA
*
8747753 CAAAGGCCTACTACTGCCACTTACCAAAACATACGAAAGCAGGGAACCAAAAAATCGAGGTTGAG
131 CAAAGCCCTACTACTGCCACTTACCAAAACATACGAAAGCAGGGAACCAAAAAATCGAGGTTGAG
*
8747818 TGACAGGATTTCGATAGGATTTTAGAAGCAAGGAAAAAGAATGGA
196 TGAAAGGATTTCGATAGGATTTTAGAAGCAAGGAAAAAGAATGGA
8747863 TCCGACTACGATTCCGCGAGAGGAGAGTCCCATTCTTCACAATTTGATACTGTCAAAAACCCAAA
1 TCCGACTACGATTCCGCGAGAGGAGAGTCCCATTCTTCACAATTTGATACTGTCAAAAACCC--A
*
8747928 AAAAAAATCAACTAACGAAACAGACAACAACACTAAAAAC-GATATTAAAAGAAAC-TCCTCTAA
64 AAAAAAATCAACTAACGAAACAGACAACAACACTAAAAACAG-CATTAAAAGAAACTTCC-CTAA
* * *
8747991 CTCGCAAATCCCTACTACCT-CCACTTACCAAAACGTACGAAAGCAGGGAACCAAAAAATCGAGG
127 CTCACAAAGCCCTACTA-CTGCCACTTACCAAAACATACGAAAGCAGGGAACCAAAAAATCGAGG
*
8748055 TTGATTGAAAGGATTTC
191 TTGAGTGAAAGGATTTC
8748072 AGAAGCAAGG
Statistics
Matches: 189, Mismatches: 15, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
240 55 0.29
241 4 0.02
242 128 0.68
243 2 0.01
ACGTcount: A:0.42, C:0.23, G:0.16, T:0.19
Consensus pattern (240 bp):
TCCGACTACGATTCCGCGAGAGGAGAGTCCCATTCTTCACAATTTGATACTGTCAAAAACCCAAA
AAAAATCAACTAACGAAACAGACAACAACACTAAAAACAGCATTAAAAGAAACTTCCCTAACTCA
CAAAGCCCTACTACTGCCACTTACCAAAACATACGAAAGCAGGGAACCAAAAAATCGAGGTTGAG
TGAAAGGATTTCGATAGGATTTTAGAAGCAAGGAAAAAGAATGGA
Found at i:8756339 original size:6 final size:6
Alignment explanation
Indices: 8756328--8756354 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
8756318 CATGTCAAAG
8756328 CTAACA CTAACA CTAACA CTAACA CTA
1 CTAACA CTAACA CTAACA CTAACA CTA
8756355 GAATATATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.48, C:0.33, G:0.00, T:0.19
Consensus pattern (6 bp):
CTAACA
Found at i:8759172 original size:7 final size:7
Alignment explanation
Indices: 8759160--8759192 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
8759150 CTTATAAAGT
8759160 TTTATTC
1 TTTATTC
8759167 TTTATTC
1 TTTATTC
8759174 TTTATTC
1 TTTATTC
8759181 TTTATTC
1 TTTATTC
8759188 TTTAT
1 TTTAT
8759193 ATAAATAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.15, C:0.12, G:0.00, T:0.73
Consensus pattern (7 bp):
TTTATTC
Found at i:8760566 original size:6 final size:6
Alignment explanation
Indices: 8760555--8760607 Score: 81
Period size: 6 Copynumber: 8.8 Consensus size: 6
8760545 TTCAGACGAT
8760555 GAACCC GAACCC GAACCC GAACCC GAACCC GAACCC G-ACCC TGAACCC
1 GAACCC GAACCC GAACCC GAACCC GAACCC GAACCC GAACCC -GAACCC
*
8760603 AAACC
1 GAACC
8760608 TGTAAACCAT
Statistics
Matches: 44, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
5 4 0.09
6 36 0.82
7 4 0.09
ACGTcount: A:0.34, C:0.49, G:0.15, T:0.02
Consensus pattern (6 bp):
GAACCC
Found at i:8768638 original size:108 final size:108
Alignment explanation
Indices: 8768506--8768711 Score: 306
Period size: 108 Copynumber: 1.9 Consensus size: 108
8768496 CTTGGACTGA
* * *
8768506 CAGATCACGACATAAGAATGTGTAAGTTCATGTGGCT-AAGACCCATGACAATATATGATTGTAT
1 CAGATCACGACATAAGAATATGTAAGTCCATGTGGCTGAA-ACCCATGACAATATATGACTGTAT
*
8768570 GAATGTTCATGGTGAAGCCGGCGATAATGTGTAGATTGACTTGG
65 GAATATTCATGGTGAAGCCGGCGATAATGTGTAGATTGACTTGG
* * **
8768614 CAGATCACGACATGAGAATATGTAAGTCCATGTGGTTGAAACCCATGGTAATATATGACTGTATG
1 CAGATCACGACATAAGAATATGTAAGTCCATGTGGCTGAAACCCATGACAATATATGACTGTATG
**
8768679 AATATTCATGGTGAAGCCTTCGATAATGTGTAG
66 AATATTCATGGTGAAGCCGGCGATAATGTGTAG
8768712 GTCAAACTAG
Statistics
Matches: 87, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
108 85 0.98
109 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (108 bp):
CAGATCACGACATAAGAATATGTAAGTCCATGTGGCTGAAACCCATGACAATATATGACTGTATG
AATATTCATGGTGAAGCCGGCGATAATGTGTAGATTGACTTGG
Found at i:8768727 original size:108 final size:108
Alignment explanation
Indices: 8768507--8768745 Score: 286
Period size: 108 Copynumber: 2.2 Consensus size: 108
8768497 TTGGACTGAC
* * * *
8768507 AGATCACGACATAAGAATGTGTAAGTTCATGTGGCTAAGACCCATGACAATATATGATTGTATGA
1 AGATCACGACATGAGAATATGTAAGTCCATGTGGCTAAGACCCATGACAATATATGACTGTATGA
* ** * *
8768572 ATGTTCATGGTGAAGCCGGCGATAATGTGTAGATTGACTTGGC
66 ATATTCATGGTGAAGCCGGCGATAATGTGTAGATAAACTTAGA
* **
8768615 AGATCACGACATGAGAATATGTAAGTCCATGTGGTTGAA-ACCCATGGTAATATATGACTGTATG
1 AGATCACGACATGAGAATATGTAAGTCCATGTGGCT-AAGACCCATGACAATATATGACTGTATG
** *
8768679 AATATTCATGGTGAAGCCTTCGATAATGTGTAGGTCAAAC-TAGA
65 AATATTCATGGTGAAGCCGGCGATAATGTGTAGAT-AAACTTAGA
*
8768723 AGATCAAGACATGA-AATTATGTA
1 AGATCACGACATGAGAA-TATGTA
8768746 TGATTACATG
Statistics
Matches: 112, Mismatches: 16, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
107 2 0.02
108 106 0.95
109 4 0.04
ACGTcount: A:0.34, C:0.13, G:0.24, T:0.28
Consensus pattern (108 bp):
AGATCACGACATGAGAATATGTAAGTCCATGTGGCTAAGACCCATGACAATATATGACTGTATGA
ATATTCATGGTGAAGCCGGCGATAATGTGTAGATAAACTTAGA
Found at i:8768864 original size:23 final size:22
Alignment explanation
Indices: 8768828--8768873 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
8768818 TGTTTGCTTG
*
8768828 TGTGGCATGATTTGCTAAGATTT
1 TGTGGCAAGATTTG-TAAGATTT
* *
8768851 TGTGGCAAGTTTTGTAATATTT
1 TGTGGCAAGATTTGTAAGATTT
8768873 T
1 T
8768874 ATTAGCGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.22, C:0.07, G:0.24, T:0.48
Consensus pattern (22 bp):
TGTGGCAAGATTTGTAAGATTT
Found at i:8774263 original size:24 final size:25
Alignment explanation
Indices: 8774228--8774280 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 25
8774218 TAAAAAACCA
8774228 AAAATAATAATAAGAAA-AATA-AATT
1 AAAATAATAATAA-AAATAA-AGAATT
8774253 AAAATAA-AATAAAAATAAAGAATT
1 AAAATAATAATAAAAATAAAGAATT
8774277 AAAA
1 AAAA
8774281 ATGGGAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
23 4 0.15
24 15 0.58
25 7 0.27
ACGTcount: A:0.75, C:0.00, G:0.04, T:0.21
Consensus pattern (25 bp):
AAAATAATAATAAAAATAAAGAATT
Done.