Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62811768
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 736185 characters in sequence are not A, C, G, or T
File 36 of 211
Found at i:9741006 original size:24 final size:24
Alignment explanation
Indices: 9740964--9741015 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
9740954 AATCAAAGTC
** *
9740964 AAATATATTATGTTAATAAATGCT
1 AAATATATTATACTAATAAATACT
*
9740988 AAATATATTATACTCATAAATACT
1 AAATATATTATACTAATAAATACT
9741012 AAAT
1 AAAT
9741016 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.50, C:0.08, G:0.04, T:0.38
Consensus pattern (24 bp):
AAATATATTATACTAATAAATACT
Found at i:9746584 original size:36 final size:37
Alignment explanation
Indices: 9746510--9746601 Score: 109
Period size: 36 Copynumber: 2.5 Consensus size: 37
9746500 ATATGTGTGG
*
9746510 AATTGAAATGAATAT-TGACTTGAAAATGGAAAAAGTGA
1 AATTGAATTGAA-ATGTGA-TTGAAAATGGAAAAAGTGA
* *
9746548 ATTTTGAATTG-AATGTGATTGAAAGT-GAAAAAGTGA
1 A-ATTGAATTGAAATGTGATTGAAAATGGAAAAAGTGA
9746584 AATTGAATTGAAATGTGA
1 AATTGAATTGAAATGTGA
9746602 AATTGGAGAC
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
35 8 0.17
36 18 0.38
37 9 0.19
38 5 0.11
39 7 0.15
ACGTcount: A:0.46, C:0.01, G:0.23, T:0.30
Consensus pattern (37 bp):
AATTGAATTGAAATGTGATTGAAAATGGAAAAAGTGA
Found at i:9746601 original size:18 final size:18
Alignment explanation
Indices: 9746551--9746606 Score: 55
Period size: 18 Copynumber: 3.2 Consensus size: 18
9746541 AAAGTGAATT
9746551 TTGAATTG-AATGTG--A
1 TTGAATTGAAATGTGAAA
* *
9746566 TTGAAAGTGAAAAAGTGAAA
1 TTG-AATTG-AAATGTGAAA
9746586 TTGAATTGAAATGTGAAA
1 TTGAATTGAAATGTGAAA
9746604 TTG
1 TTG
9746607 GAGACCCTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
15 3 0.09
16 4 0.12
18 17 0.53
19 4 0.12
20 4 0.12
ACGTcount: A:0.43, C:0.00, G:0.25, T:0.32
Consensus pattern (18 bp):
TTGAATTGAAATGTGAAA
Found at i:9747940 original size:13 final size:13
Alignment explanation
Indices: 9747922--9747984 Score: 74
Period size: 13 Copynumber: 4.8 Consensus size: 13
9747912 TCTTTATTGT
*
9747922 TTTTGAGAAATGC
1 TTTTGAGAAATAC
*
9747935 TTTTGA-AAAGTGC
1 TTTTGAGAAA-TAC
* *
9747948 TTTTCAGAAGTAC
1 TTTTGAGAAATAC
9747961 TTTTGAGAAATAC
1 TTTTGAGAAATAC
9747974 TTTTGAGAAAT
1 TTTTGAGAAAT
9747985 TTGAGTGTTT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
12 3 0.07
13 38 0.88
14 2 0.05
ACGTcount: A:0.33, C:0.08, G:0.19, T:0.40
Consensus pattern (13 bp):
TTTTGAGAAATAC
Found at i:9748596 original size:22 final size:21
Alignment explanation
Indices: 9748571--9748614 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 21
9748561 AAGCATATGA
*
9748571 AAATGATTTGGTTATATTCAAT
1 AAATGATTTGGTTA-ATACAAT
9748593 AAATGATTTGGTTAATACAAT
1 AAATGATTTGGTTAATACAAT
9748614 A
1 A
9748615 CTTATATTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.41, C:0.05, G:0.14, T:0.41
Consensus pattern (21 bp):
AAATGATTTGGTTAATACAAT
Found at i:9750190 original size:12 final size:12
Alignment explanation
Indices: 9750173--9750208 Score: 72
Period size: 12 Copynumber: 3.0 Consensus size: 12
9750163 TGCGCAAGAA
9750173 AAAAACTAAAGC
1 AAAAACTAAAGC
9750185 AAAAACTAAAGC
1 AAAAACTAAAGC
9750197 AAAAACTAAAGC
1 AAAAACTAAAGC
9750209 TGATATACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.67, C:0.17, G:0.08, T:0.08
Consensus pattern (12 bp):
AAAAACTAAAGC
Found at i:9751938 original size:25 final size:27
Alignment explanation
Indices: 9751907--9751968 Score: 92
Period size: 25 Copynumber: 2.4 Consensus size: 27
9751897 ATATTTTTTC
9751907 ATATTAATATAATTATT-TTTAATTA-
1 ATATTAATATAATTATTATTTAATTAT
*
9751932 ATATTAATATAATTTTTATTTAATTAT
1 ATATTAATATAATTATTATTTAATTAT
*
9751959 ATTTTAATAT
1 ATATTAATAT
9751969 TGTGGCATGA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
25 16 0.48
26 8 0.24
27 9 0.27
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (27 bp):
ATATTAATATAATTATTATTTAATTAT
Found at i:9751946 original size:22 final size:19
Alignment explanation
Indices: 9751909--9751955 Score: 58
Period size: 22 Copynumber: 2.3 Consensus size: 19
9751899 ATTTTTTCAT
9751909 ATTAATATAATTATTTTTA
1 ATTAATATAATTATTTTTA
9751928 ATTAATATTAATATAATTTTTA
1 ATTAATA-TAAT-T-ATTTTTA
*
9751950 TTTAAT
1 ATTAAT
9751956 TATATTTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
19 7 0.29
20 4 0.17
21 1 0.04
22 12 0.50
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (19 bp):
ATTAATATAATTATTTTTA
Found at i:9766185 original size:16 final size:17
Alignment explanation
Indices: 9766164--9766203 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
9766154 ATTATCTTAG
9766164 ATTTTTTAGTGT-TTCT
1 ATTTTTTAGTGTATTCT
*
9766180 ATTTTTT-GTGTATTTT
1 ATTTTTTAGTGTATTCT
9766196 ATTTTTTA
1 ATTTTTTA
9766204 ATCAAATTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 4 0.19
16 17 0.81
ACGTcount: A:0.15, C:0.03, G:0.10, T:0.72
Consensus pattern (17 bp):
ATTTTTTAGTGTATTCT
Found at i:9779257 original size:14 final size:14
Alignment explanation
Indices: 9779238--9779264 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
9779228 CCATCAATCT
9779238 TTATTTTTTTTAAA
1 TTATTTTTTTTAAA
9779252 TTATTTTTTTTAA
1 TTATTTTTTTTAA
9779265 TAGATTTGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (14 bp):
TTATTTTTTTTAAA
Found at i:9781994 original size:23 final size:23
Alignment explanation
Indices: 9781968--9782103 Score: 109
Period size: 23 Copynumber: 5.8 Consensus size: 23
9781958 GGACTCACCA
9781968 CAGCTTGTATGAGCTTACCGTTT
1 CAGCTTGTATGAGCTTACCGTTT
* * *
9781991 CAGC-TCTACGGAGCTTACCATTT
1 CAGCTTGTA-TGAGCTTACCGTTT
*
9782014 CAGCTAG-ATAGAGCTTACCGTTTAT
1 CAGCTTGTAT-GAGCTTACCG-TT-T
*
9782039 CAGCTTGGAATGAGCTTACCGTTT
1 CAGCTT-GTATGAGCTTACCGTTT
* *
9782063 CAGC-TCTACGGAGCTTACCGTTT
1 CAGCTTGTA-TGAGCTTACCGTTT
*
9782086 CAGCTCG-ATAGAGCTTAC
1 CAGCTTGTAT-GAGCTTAC
9782104 AGATCATGGC
Statistics
Matches: 89, Mismatches: 14, Indels: 20
0.72 0.11 0.16
Matches are distributed among these distances:
22 4 0.04
23 57 0.64
24 7 0.08
25 8 0.09
26 11 0.12
27 2 0.02
ACGTcount: A:0.22, C:0.25, G:0.21, T:0.32
Consensus pattern (23 bp):
CAGCTTGTATGAGCTTACCGTTT
Found at i:9782096 original size:72 final size:71
Alignment explanation
Indices: 9781968--9782103 Score: 236
Period size: 72 Copynumber: 1.9 Consensus size: 71
9781958 GGACTCACCA
*
9781968 CAGCTTGTATGAGCTTACCGTTTCAGCTCTACGGAGCTTACCATTTCAGCTAGATAGAGCTTACC
1 CAGCTTGAATGAGCTTACCGTTTCAGCTCTACGGAGCTTACCATTTCAGCTAGATAGAGCTTACC
9782033 GTTTAT
66 GTTTAT
* *
9782039 CAGCTTGGAATGAGCTTACCGTTTCAGCTCTACGGAGCTTACCGTTTCAGCTCGATAGAGCTTAC
1 CAGCTT-GAATGAGCTTACCGTTTCAGCTCTACGGAGCTTACCATTTCAGCTAGATAGAGCTTAC
9782104 AGATCATGGC
Statistics
Matches: 61, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
71 6 0.10
72 55 0.90
ACGTcount: A:0.22, C:0.25, G:0.21, T:0.32
Consensus pattern (71 bp):
CAGCTTGAATGAGCTTACCGTTTCAGCTCTACGGAGCTTACCATTTCAGCTAGATAGAGCTTACC
GTTTAT
Found at i:9789604 original size:21 final size:22
Alignment explanation
Indices: 9789578--9789623 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
9789568 CTATCACATG
9789578 TATGTGTATAAAAAT-TATAAA
1 TATGTGTATAAAAATATATAAA
*
9789599 TATGTGTTTAAAAATAATATAAA
1 TATGTGTATAAAAAT-ATATAAA
9789622 TA
1 TA
9789624 ATAAAATATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 14 0.64
23 8 0.36
ACGTcount: A:0.52, C:0.00, G:0.09, T:0.39
Consensus pattern (22 bp):
TATGTGTATAAAAATATATAAA
Found at i:9789631 original size:14 final size:15
Alignment explanation
Indices: 9789614--9789657 Score: 58
Period size: 14 Copynumber: 3.1 Consensus size: 15
9789604 GTTTAAAAAT
9789614 AATATAAATAA-TAA
1 AATATAAATAATTAA
*
9789628 AATATATATAATTAA
1 AATATAAATAATTAA
9789643 AAT-TAAA-AATTAA
1 AATATAAATAATTAA
9789656 AA
1 AA
9789658 CTAATATCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
13 8 0.30
14 13 0.48
15 6 0.22
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (15 bp):
AATATAAATAATTAA
Found at i:9790688 original size:5 final size:5
Alignment explanation
Indices: 9790678--9790707 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
9790668 GTTTTTATCC
*
9790678 TTTTA TTTTA TTTTA TTTTA TTTCA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
9790708 CACATTAAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.20, C:0.03, G:0.00, T:0.77
Consensus pattern (5 bp):
TTTTA
Found at i:9791278 original size:3 final size:3
Alignment explanation
Indices: 9791265--9791503 Score: 88
Period size: 3 Copynumber: 78.0 Consensus size: 3
9791255 TTTGCATTTT
* * *
9791265 TTA TT- TTA TTA TTAA TCA TATA TTT TTA TTA -TA TTTA TT- TATA TTC
1 TTA TTA TTA TTA TT-A TTA T-TA TTA TTA TTA TTA -TTA TTA T-TA TTA
* * *
9791311 TTA TTCA TTA TTA -TA TATA TGTA TACA TTA TT- TTA ATA TGTA CTA
1 TTA TT-A TTA TTA TTA T-TA T-TA T-TA TTA TTA TTA TTA T-TA TTA
* * *
9791356 TTA TT- TTAA GTTA TTA TTA TATA TTA GTA TT- TAA GCTCA TTA TGTA
1 TTA TTA TT-A -TTA TTA TTA T-TA TTA TTA TTA TTA --TTA TTA T-TA
* *
9791402 TTA TGTA TTA TTA -TA TTG TTA TTA TTA TTA TTA TTA TT- TTG TT-
1 TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
** * * * *
9791445 TTA AAA TTA TTA TTA TTA TTA TTA TCA GTA TTA TAA AT- TTA TTA TGTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
9791493 TTA TTA -TA TTA
1 TTA TTA TTA TTA
9791504 AGTTTCTTCT
Statistics
Matches: 176, Mismatches: 33, Indels: 54
0.67 0.13 0.21
Matches are distributed among these distances:
2 21 0.12
3 118 0.67
4 33 0.19
5 4 0.02
ACGTcount: A:0.33, C:0.03, G:0.05, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:9791607 original size:4 final size:4
Alignment explanation
Indices: 9791600--9791630 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
9791590 TTTTATAATT
9791600 CATA CATA CATA CATA CATA CATA CATA CAT
1 CATA CATA CATA CATA CATA CATA CATA CAT
9791631 CTTATATATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.48, C:0.26, G:0.00, T:0.26
Consensus pattern (4 bp):
CATA
Found at i:9793214 original size:27 final size:27
Alignment explanation
Indices: 9793196--9793408 Score: 201
Period size: 27 Copynumber: 8.1 Consensus size: 27
9793186 TAATGTGTAG
*
9793196 TATTTATAACAGTGTATTAAAATAGTA
1 TATTTATAACAGTATATTAAAATAGTA
*
9793223 TATTTATAACAGTATATTAAAATATTA
1 TATTTATAACAGTATATTAAAATAGTA
* * *
9793250 TA-TTA-ACACAGTATATTTATAACAGCA
1 TATTTATA-ACAGTATA-TTAAAATAGTA
* * * *
9793277 TA-CTAAAACAATATATTAAAATAATA
1 TATTTATAACAGTATATTAAAATAGTA
*
9793303 TATTTATAACAGTATATTAAAACAGTA
1 TATTTATAACAGTATATTAAAATAGTA
*
9793330 TATTTATAACAGTATATTAAAACAGTA
1 TATTTATAACAGTATATTAAAATAGTA
* * *
9793357 TA-TTAAAACAATATATT-ACA-A--A
1 TATTTATAACAGTATATTAAAATAGTA
* *
9793379 T-TTTATAATAGTATATTAAAACAGTA
1 TATTTATAACAGTATATTAAAATAGTA
9793405 TATT
1 TATT
9793409 ACATTAAAAT
Statistics
Matches: 152, Mismatches: 24, Indels: 20
0.78 0.12 0.10
Matches are distributed among these distances:
22 14 0.09
23 2 0.01
24 2 0.01
25 3 0.02
26 35 0.23
27 95 0.62
28 1 0.01
ACGTcount: A:0.49, C:0.07, G:0.06, T:0.38
Consensus pattern (27 bp):
TATTTATAACAGTATATTAAAATAGTA
Found at i:9793254 original size:40 final size:40
Alignment explanation
Indices: 9793210--9793409 Score: 223
Period size: 40 Copynumber: 5.1 Consensus size: 40
9793200 TATAACAGTG
* *
9793210 TATTAAAATAGTATATTTATAACAGTATATTAAAATATTA
1 TATTAAAATAGTATATTTATAACAGTATATTAAAACAATA
* * * *
9793250 TATTAACACAGTATATTTATAACAGCATACTAAAACAATA
1 TATTAAAATAGTATATTTATAACAGTATATTAAAACAATA
* *
9793290 TATTAAAATAATATATTTATAACAGTATATTAAAACAGTA
1 TATTAAAATAGTATATTTATAACAGTATATTAAAACAATA
* * *
9793330 TATTTATAACAGTATA-TTAAAACAGTATATTAAAACAATA
1 TA-TTAAAATAGTATATTTATAACAGTATATTAAAACAATA
* * *
9793370 TATT-ACA-A--AT-TTTATAATAGTATATTAAAACAGTA
1 TATTAAAATAGTATATTTATAACAGTATATTAAAACAATA
9793405 TATTA
1 TATTA
9793410 CATTAAAATT
Statistics
Matches: 135, Mismatches: 22, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
35 27 0.20
37 1 0.01
38 1 0.01
39 2 0.01
40 94 0.70
41 10 0.07
ACGTcount: A:0.51, C:0.07, G:0.05, T:0.38
Consensus pattern (40 bp):
TATTAAAATAGTATATTTATAACAGTATATTAAAACAATA
Found at i:9793274 original size:67 final size:66
Alignment explanation
Indices: 9793196--9793385 Score: 236
Period size: 67 Copynumber: 2.8 Consensus size: 66
9793186 TAATGTGTAG
* * * * *
9793196 TATTTATAACAGTGTATTAAAATAGTATATTTATAACAGTATATTAAAATATTATATTAACACAG
1 TATTTATAACAGTATATTAAAACAGTATA-TTAAAACAATATATTAAAATATTATATTAAAACAG
9793261 TA
65 TA
* * * * * * *
9793263 TATTTATAACAGCATACTAAAACAATATATTAAAATAATATATTTATAACAGTATATTAAAACAG
1 TATTTATAACAGTATATTAAAACAGTATATTAAAACAATATA-TTAAAATATTATATTAAAACAG
9793328 TA
65 TA
*
9793330 TATTTATAACAGTATATTAAAACAGTATATTAAAACAATATATTACAAATTTTATA
1 TATTTATAACAGTATATTAAAACAGTATATTAAAACAATATATTA-AAATATTATA
9793386 ATAGTATATT
Statistics
Matches: 101, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
66 13 0.13
67 88 0.87
ACGTcount: A:0.49, C:0.07, G:0.05, T:0.38
Consensus pattern (66 bp):
TATTTATAACAGTATATTAAAACAGTATATTAAAACAATATATTAAAATATTATATTAAAACAGT
A
Found at i:9793406 original size:13 final size:13
Alignment explanation
Indices: 9793194--9793409 Score: 190
Period size: 13 Copynumber: 16.7 Consensus size: 13
9793184 ATTAATGTGT
*
9793194 AGTAT-TTATAAC
1 AGTATATTAAAAC
* *
9793206 AGTGTATTAAAAT
1 AGTATATTAAAAC
*
9793219 AGTATATTTATAAC
1 AGTATA-TTAAAAC
*
9793233 AGTATATTAAAAT
1 AGTATATTAAAAC
* *
9793246 ATTATATTAACAC
1 AGTATATTAAAAC
*
9793259 AGTATATTTATAAC
1 AGTATA-TTAAAAC
* *
9793273 AGCATACTAAAAC
1 AGTATATTAAAAC
* *
9793286 AATATATTAAAAT
1 AGTATATTAAAAC
* *
9793299 AATATATTTATAAC
1 AGTATA-TTAAAAC
9793313 AGTATATTAAAAC
1 AGTATATTAAAAC
*
9793326 AGTATATTTATAAC
1 AGTATA-TTAAAAC
9793340 AGTATATTAAAAC
1 AGTATATTAAAAC
9793353 AGTATATTAAAAC
1 AGTATATTAAAAC
* *
9793366 AATATATTACAA-
1 AGTATATTAAAAC
* *
9793378 A-T-T-TTATAAT
1 AGTATATTAAAAC
9793388 AGTATATTAAAAC
1 AGTATATTAAAAC
9793401 AGTATATTA
1 AGTATATTA
9793410 CATTAAAATT
Statistics
Matches: 163, Mismatches: 32, Indels: 17
0.77 0.15 0.08
Matches are distributed among these distances:
9 5 0.03
10 2 0.01
11 2 0.01
12 6 0.04
13 105 0.64
14 43 0.26
ACGTcount: A:0.50, C:0.07, G:0.06, T:0.38
Consensus pattern (13 bp):
AGTATATTAAAAC
Found at i:9794415 original size:18 final size:18
Alignment explanation
Indices: 9794392--9794431 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
9794382 TTTTTAAGTA
9794392 AATAAAAATGTTGCAAAG
1 AATAAAAATGTTGCAAAG
9794410 AATAAAAATGTTGCAAAG
1 AATAAAAATGTTGCAAAG
9794428 AATA
1 AATA
9794432 CTATACTAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.57, C:0.05, G:0.15, T:0.23
Consensus pattern (18 bp):
AATAAAAATGTTGCAAAG
Found at i:9797476 original size:9 final size:9
Alignment explanation
Indices: 9797462--9797528 Score: 98
Period size: 9 Copynumber: 7.4 Consensus size: 9
9797452 TTTGGTTAAA
*
9797462 AATTAACCT
1 AATTAACCG
*
9797471 AATTAACCA
1 AATTAACCG
9797480 AATTAACCG
1 AATTAACCG
*
9797489 AATAAACCG
1 AATTAACCG
9797498 AATTAACCG
1 AATTAACCG
*
9797507 AATTACCCG
1 AATTAACCG
9797516 AATTAACCG
1 AATTAACCG
9797525 AATT
1 AATT
9797529 GAATCACTAC
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 52 1.00
ACGTcount: A:0.46, C:0.22, G:0.07, T:0.24
Consensus pattern (9 bp):
AATTAACCG
Found at i:9797671 original size:18 final size:18
Alignment explanation
Indices: 9797631--9797674 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
9797621 AATTTTTATG
**
9797631 ATTGGGTTGGGTTGGGTA
1 ATTGGGTTGGGTTGAATA
9797649 ATTGGGTTGGGTTGAATA
1 ATTGGGTTGGGTTGAATA
*
9797667 CTTGGGTT
1 ATTGGGTT
9797675 TAGATTGGGC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.14, C:0.02, G:0.43, T:0.41
Consensus pattern (18 bp):
ATTGGGTTGGGTTGAATA
Found at i:9803679 original size:3 final size:3
Alignment explanation
Indices: 9803671--9803701 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
9803661 TATGATTTTT
9803671 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
9803702 TAATTAATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:9813124 original size:14 final size:15
Alignment explanation
Indices: 9813102--9813177 Score: 59
Period size: 14 Copynumber: 5.0 Consensus size: 15
9813092 CAATCAAACA
9813102 CCAGAAAAT-ATTTT
1 CCAGAAAATCATTTT
*
9813116 CCAGTAAATCATTTT
1 CCAGAAAATCATTTT
*
9813131 ACAGAAAAGTAAACATTTT
1 CCAGAAAA-T---CATTTT
9813150 CCAG-AAATCATTTT
1 CCAGAAAATCATTTT
* *
9813164 ACGGAAAAT-ATTTT
1 CCAGAAAATCATTTT
9813178 ACTGGCAATC
Statistics
Matches: 50, Mismatches: 6, Indels: 12
0.74 0.09 0.18
Matches are distributed among these distances:
14 21 0.42
15 15 0.30
16 1 0.02
17 1 0.02
18 3 0.06
19 9 0.18
ACGTcount: A:0.42, C:0.14, G:0.09, T:0.34
Consensus pattern (15 bp):
CCAGAAAATCATTTT
Found at i:9813149 original size:19 final size:20
Alignment explanation
Indices: 9813118--9813156 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
9813108 AATATTTTCC
9813118 AGTAAATCATTTTACAGAAA
1 AGTAAATCATTTTACAGAAA
*
9813138 AGTAAA-CATTTTCCAGAAA
1 AGTAAATCATTTTACAGAAA
9813157 TCATTTTACG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.49, C:0.13, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAATCATTTTACAGAAA
Found at i:9813275 original size:9 final size:9
Alignment explanation
Indices: 9813253--9813286 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
9813243 TTATTCATTT
9813253 AATTAATT-
1 AATTAATTA
9813261 AATTAATTA
1 AATTAATTA
*
9813270 AATTAACTA
1 AATTAATTA
9813279 AATTAATT
1 AATTAATT
9813287 TCTCAATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
8 8 0.35
9 15 0.65
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (9 bp):
AATTAATTA
Found at i:9817077 original size:22 final size:22
Alignment explanation
Indices: 9817052--9817116 Score: 103
Period size: 22 Copynumber: 3.0 Consensus size: 22
9817042 CCCAAATAAG
9817052 ACAACAGCCCCATACCCCCACT
1 ACAACAGCCCCATACCCCCACT
*
9817074 ACAACAGCCCTATACCCCCACT
1 ACAACAGCCCCATACCCCCACT
* *
9817096 ATAGCAGCCCCATACCCCCAC
1 ACAACAGCCCCATACCCCCAC
9817117 GCGTCTGACA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 39 1.00
ACGTcount: A:0.31, C:0.52, G:0.06, T:0.11
Consensus pattern (22 bp):
ACAACAGCCCCATACCCCCACT
Found at i:9817347 original size:18 final size:19
Alignment explanation
Indices: 9817311--9817348 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
9817301 TCGGCATTTT
**
9817311 AATACAAAAAGCAGAGGAA
1 AATACAAAAAAAAGAGGAA
9817330 AATACAAAAAAAAG-GGAA
1 AATACAAAAAAAAGAGGAA
9817348 A
1 A
9817349 CAAGGAACGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.68, C:0.08, G:0.18, T:0.05
Consensus pattern (19 bp):
AATACAAAAAAAAGAGGAA
Found at i:9818097 original size:3 final size:3
Alignment explanation
Indices: 9818073--9818143 Score: 54
Period size: 3 Copynumber: 23.3 Consensus size: 3
9818063 AATATCCTTG
* * * **
9818073 TTA TTT TTA -TA TTA TTA GTA TTA TTA GTA TTA CCA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
9818120 TGTA TTA GTA TATA TTT TTA TTA T
1 T-TA TTA TTA T-TA TTA TTA TTA T
9818144 GTACGTGTAT
Statistics
Matches: 51, Mismatches: 14, Indels: 6
0.72 0.20 0.08
Matches are distributed among these distances:
2 2 0.04
3 43 0.84
4 6 0.12
ACGTcount: A:0.31, C:0.03, G:0.06, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:9818140 original size:23 final size:22
Alignment explanation
Indices: 9818086--9818146 Score: 70
Period size: 23 Copynumber: 2.8 Consensus size: 22
9818076 TTTTTATATT
*
9818086 ATTAGTATTATTA-GTATTACC
1 ATTATTATTATTATGTATTACC
**
9818107 ATTATTATTATTATGTATTAGT
1 ATTATTATTATTATGTATTACC
*
9818129 ATATATTTTTATTATGTA
1 AT-TATTATTATTATGTA
9818147 CGTGTATACA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.35
22 8 0.24
23 14 0.41
ACGTcount: A:0.33, C:0.03, G:0.08, T:0.56
Consensus pattern (22 bp):
ATTATTATTATTATGTATTACC
Found at i:9818153 original size:23 final size:23
Alignment explanation
Indices: 9818109--9818154 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
9818099 GTATTACCAT
*
9818109 TATTATTATTATGTATTAGTATA
1 TATTATTATTATGTAGTAGTATA
*
9818132 TATTTTTATTATGTACGT-GTATA
1 TATTATTATTATGTA-GTAGTATA
9818155 CATATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 19 0.95
24 1 0.05
ACGTcount: A:0.30, C:0.02, G:0.11, T:0.57
Consensus pattern (23 bp):
TATTATTATTATGTAGTAGTATA
Found at i:9824111 original size:69 final size:71
Alignment explanation
Indices: 9823934--9824111 Score: 209
Period size: 73 Copynumber: 2.5 Consensus size: 71
9823924 CTTTCCAAGG
* * * *
9823934 AAAATTGACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTCACGCTGAGGTATTTTAATTCCTT
1 AAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGGCACGCCGAGGTATTTTAAGT-CTT
*
9823999 TTGTTTCA
65 ATGTTT-A
** * * *
9824007 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTACTTTT-AGT-TT
1 AAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGGCACGCCGAGGTA-TTTTAAGTCTT
9824070 ATGTTT-
65 ATGTTTA
*
9824076 TAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
9824112 TTTAATTTTT
Statistics
Matches: 89, Mismatches: 15, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
69 31 0.35
71 7 0.08
73 47 0.53
74 4 0.04
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (71 bp):
AAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGGCACGCCGAGGTATTTTAAGTCTTA
TGTTTA
Found at i:9824251 original size:73 final size:70
Alignment explanation
Indices: 9824115--9824948 Score: 892
Period size: 73 Copynumber: 11.5 Consensus size: 70
9824105 TAAGCCTTTT
* **
9824115 AATTTTTGTTTTTC-AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGACACGCTGAGG
1 AATTTCTG-TTTTCAAAAATCAACTCATATTGC-AGAAATGAGTTGAGCCTCAGACACGCTGAGG
9824179 TAATTTC
64 TAATTTC
*
9824186 AATTTCTGTTGTTAAAAAAAAAATCAACTCATATTGC-G-AATGAGTTGAGCCTCAGACACGCTG
1 AATTTCTGTT-TT----CAAAAATCAACTCATATTGCAGAAATGAGTTGAGCCTCAGACACGCTG
9824249 AGGTAATTTC
61 AGGTAATTTC
* *
9824259 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTTGAGCCTCAAGGCACGCTGAG
1 AATTTCTGTTTTCAAAAATCAACTCATATTGC-AGAAATGAG-TTGAGCCTC-AGACACGCTGAG
*
9824324 GTTATTTTC
63 G-TAATTTC
* *
9824333 AATTT-TGCTTTTC-AAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGGCACGCTGAG
1 AATTTCTG-TTTTCAAAAATCAACTCATATTGC-AGAAATGAGTTGAGCCTC-AGACACGCTGAG
*
9824396 GTATTTTC
63 GTAATTTC
* *
9824404 AATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AATTTCTG-TTTTCAAAAATCAACTCATATTGC-AGAAATGAGTTGAGCCTC-AGACACGCTGAG
9824469 GTAATTTC
63 GTAATTTC
* ** * *
9824477 AATTTTTGTTTTCCAAATTTCAACTCATGTTGCGAGAAATGGGTTGAGCCTCAGGACACGCTGAG
1 AATTTCTGTTTT-CAAAAATCAACTCATATTGC-AGAAATGAGTTGAGCCTCA-GACACGCTGAG
* *
9824542 GAAACTTC
63 GTAATTTC
* **
9824550 AATTTTTGTTTTTC-AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACACGCTG
1 AATTTCTG-TTTTCAAAAATCAACTCATATTGC-AGAAATGAGTTGAGCCTCA-G--ACACGCTG
9824614 A-GTAATTTC
61 AGGTAATTTC
*
9824623 AATTTCTGTTGTCAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAG
1 AATTTCTGTTTTC-AAAAATCAACTCATATTGC-AGAAATGAGTTGAGCCTCA-GACACGCTGAG
9824688 GTAATTTC
63 GTAATTTC
* ** * *
9824696 AATTTTTGTTTTCCAAATTTCAACTCATGTTGCGAGAAATGGGTTGAGCCTCAGGACACGCTGAG
1 AATTTCTGTTTT-CAAAAATCAACTCATATTGC-AGAAATGAGTTGAGCCTCA-GACACGCTGAG
9824761 GTAATTTC
63 GTAATTTC
* **
9824769 AATTTTTGTTTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGCTGAG
1 AATTTCTG-TTTTCAAAAATCAACTCATATTGC-AGAAATGAGTTGAGCCTCAG-ACACGCTGAG
9824833 GTAATTTC
63 GTAATTTC
** * * *
9824841 AATTTCTGTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGA
1 AATTTCTG--TTTTCAAAAATCAACTCATATTGC-AGAAATGAGTTGAGCCTC-AGACACGCTGA
*
9824906 GGTATTTTC
62 GGTAATTTC
* **
9824915 AAATTCTACTTTCAAAAAAATCAACTCATATTGC
1 AATTTCTGTTTTC--AAAAATCAACTCATATTGC
9824949 GAGAGGTGGG
Statistics
Matches: 680, Mismatches: 52, Indels: 59
0.86 0.07 0.07
Matches are distributed among these distances:
68 18 0.03
70 3 0.00
71 28 0.04
72 154 0.23
73 309 0.45
74 149 0.22
75 1 0.00
76 18 0.03
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.33
Consensus pattern (70 bp):
AATTTCTGTTTTCAAAAATCAACTCATATTGCAGAAATGAGTTGAGCCTCAGACACGCTGAGGTA
ATTTC
Found at i:9824672 original size:219 final size:217
Alignment explanation
Indices: 9824115--9824916 Score: 1140
Period size: 219 Copynumber: 3.7 Consensus size: 217
9824105 TAAGCCTTTT
*
9824115 AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGACACGCTGAGGT
1 AATTTTTGTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGT
*
9824180 AATTTCAATTTCTG-TTGTTAAAAAAAAAATCAACTCATATTGC--G-AATGAGTTGAGCCTC-A
66 AATTTCAATTTCTGTTTG-T----CAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAA
* * * *
9824240 GACACGCTGAGGTAATTTCAATTTCTGTTTT-CAAAATTCAACTCATATTGCGAGAAATGAGTTT
126 GACACGCTGAGGTAATTTCAATTTTTGTTTTCCAAATTTCAACTCATGTTGCGAGAAATG-GGTT
*
9824304 GAGCCTCAAGG-CACGCTGAGGTTATTTTC
190 GAGCCTC-AGGACACGCTGAGG-TAATTTC
* * ** *
9824333 AA-TTTTGCTTTTCAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGGCACGCTGAGG
1 AATTTTTGTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGACACGCTGAGG
* *
9824397 TATTTTCAATTTCTGCTTT-TCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAC
65 TAATTTCAATTTCTG-TTTGTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAC
*
9824461 ACGTTGAGGTAATTTCAATTTTTGTTTTCCAAATTTCAACTCATGTTGCGAGAAATGGGTTGAGC
129 ACGCTGAGGTAATTTCAATTTTTGTTTTCCAAATTTCAACTCATGTTGCGAGAAATGGGTTGAGC
* *
9824526 CTCAGGACACGCTGAGGAAACTTC
194 CTCAGGACACGCTGAGGTAATTTC
*
9824550 AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACACGCTGA
1 AATTTTTGTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-G--ACACGCTGA
*
9824615 -GTAATTTCAATTTCTG-TTGTCAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGG
63 GGTAATTTCAATTTCTGTTTGTC-AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG
9824678 ACACGCTGAGGTAATTTCAATTTTTGTTTTCCAAATTTCAACTCATGTTGCGAGAAATGGGTTGA
127 ACACGCTGAGGTAATTTCAATTTTTGTTTTCCAAATTTCAACTCATGTTGCGAGAAATGGGTTGA
9824743 GCCTCAGGACACGCTGAGGTAATTTC
192 GCCTCAGGACACGCTGAGGTAATTTC
9824769 AATTTTTGTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGCTGAGG
1 AATTTTTGTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-ACACGCTGAGG
* ** ** *
9824834 TAATTTCAATTTCTGTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGC
65 TAATTTCAATTTCTG-TTTGTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAC
* *
9824899 ACGCCGAGGTATTTTCAA
129 ACGCTGAGGTAATTTCAA
9824917 ATTCTACTTT
Statistics
Matches: 528, Mismatches: 38, Indels: 35
0.88 0.06 0.06
Matches are distributed among these distances:
214 18 0.03
216 1 0.00
217 79 0.15
218 142 0.27
219 274 0.52
220 14 0.03
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (217 bp):
AATTTTTGTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGT
AATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
GCTGAGGTAATTTCAATTTTTGTTTTCCAAATTTCAACTCATGTTGCGAGAAATGGGTTGAGCCT
CAGGACACGCTGAGGTAATTTC
Found at i:9825168 original size:217 final size:216
Alignment explanation
Indices: 9824930--9825322 Score: 590
Period size: 217 Copynumber: 1.8 Consensus size: 216
9824920 CTACTTTCAA
*
9824930 AAAAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAGCT
1 AAAAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAACT
* * **** * * **
9824995 CATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTTGTGTGT-TT
66 CATATTGCGAGAGGTGAGTTGAACCTCAAAACACGCTGAGGTAATTTCAA-TTTCTGT-TGTCAA
* ** * *
9825059 TAATTTCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTTCAAAA
129 AAAAATCAACTCATATTGCGAAAAGTGAGTTGAGCCTCAGGTCACATGCCGAGGTATTTTCAAAA
9825124 TCTGTTTGGCAAATTCTGTTTTC
194 TCTGTTTGGCAAATTCTGTTTTC
9825147 AAAAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAACT
1 AAAAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAACT
*
9825212 CATATTGCGAGAGGTGAGTTGAATCTCAAAACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAA
66 CATATTGCGAGAGGTGAGTTGAACCTCAAAACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAA
* *
9825277 AAATCAACTCATATTGTGAAAAGTGAGTTGAGCCTCAGTTCACATG
131 AAATCAACTCATATTGCGAAAAGTGAGTTGAGCCTCAGGTCACATG
9825323 TTGAGATATC
Statistics
Matches: 156, Mismatches: 19, Indels: 3
0.88 0.11 0.02
Matches are distributed among these distances:
215 3 0.02
216 47 0.30
217 106 0.68
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (216 bp):
AAAAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAACT
CATATTGCGAGAGGTGAGTTGAACCTCAAAACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAA
AAATCAACTCATATTGCGAAAAGTGAGTTGAGCCTCAGGTCACATGCCGAGGTATTTTCAAAATC
TGTTTGGCAAATTCTGTTTTC
Found at i:9825998 original size:22 final size:22
Alignment explanation
Indices: 9825973--9826037 Score: 112
Period size: 22 Copynumber: 3.0 Consensus size: 22
9825963 CCCAAATAAG
9825973 ACAACAGCCCCATACCCCCACT
1 ACAACAGCCCCATACCCCCACT
9825995 ACAACAGCCCCATACCCCCACT
1 ACAACAGCCCCATACCCCCACT
* *
9826017 ATAGCAGCCCCATACCCCCAC
1 ACAACAGCCCCATACCCCCAC
9826038 GCGTCTGACA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 41 1.00
ACGTcount: A:0.31, C:0.54, G:0.06, T:0.09
Consensus pattern (22 bp):
ACAACAGCCCCATACCCCCACT
Found at i:9826267 original size:18 final size:19
Alignment explanation
Indices: 9826231--9826268 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
9826221 TCGGCATTTT
**
9826231 AATACAAAAAGCAGAGGAA
1 AATACAAAAAAAAGAGGAA
9826250 AATACAAAAAAAAG-GGAA
1 AATACAAAAAAAAGAGGAA
9826268 A
1 A
9826269 CAAGGAACAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.68, C:0.08, G:0.18, T:0.05
Consensus pattern (19 bp):
AATACAAAAAAAAGAGGAA
Found at i:9826520 original size:11 final size:11
Alignment explanation
Indices: 9826504--9826531 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
9826494 GGCCGGATTC
9826504 CCCTTCCCCCT
1 CCCTTCCCCCT
9826515 CCCTTCCCCCT
1 CCCTTCCCCCT
9826526 CCCTTC
1 CCCTTC
9826532 TCTCTTCCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.00, C:0.71, G:0.00, T:0.29
Consensus pattern (11 bp):
CCCTTCCCCCT
Found at i:9827038 original size:3 final size:3
Alignment explanation
Indices: 9827014--9827084 Score: 54
Period size: 3 Copynumber: 23.3 Consensus size: 3
9827004 AATATCCTTG
* * * **
9827014 TTA TTT TTA -TA TTA TTA GTA TTA TTA GTA TTA CCA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
9827061 TGTA TTA GTA TATA TTT TTA TTA T
1 T-TA TTA TTA T-TA TTA TTA TTA T
9827085 GTACGTGTAT
Statistics
Matches: 51, Mismatches: 14, Indels: 6
0.72 0.20 0.08
Matches are distributed among these distances:
2 2 0.04
3 43 0.84
4 6 0.12
ACGTcount: A:0.31, C:0.03, G:0.06, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:9827081 original size:23 final size:22
Alignment explanation
Indices: 9827027--9827087 Score: 70
Period size: 23 Copynumber: 2.8 Consensus size: 22
9827017 TTTTTATATT
*
9827027 ATTAGTATTATTA-GTATTACC
1 ATTATTATTATTATGTATTACC
**
9827048 ATTATTATTATTATGTATTAGT
1 ATTATTATTATTATGTATTACC
*
9827070 ATATATTTTTATTATGTA
1 AT-TATTATTATTATGTA
9827088 CGTGTATACA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.35
22 8 0.24
23 14 0.41
ACGTcount: A:0.33, C:0.03, G:0.08, T:0.56
Consensus pattern (22 bp):
ATTATTATTATTATGTATTACC
Found at i:9827094 original size:23 final size:23
Alignment explanation
Indices: 9827050--9827095 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
9827040 GTATTACCAT
*
9827050 TATTATTATTATGTATTAGTATA
1 TATTATTATTATGTAGTAGTATA
*
9827073 TATTTTTATTATGTACGT-GTATA
1 TATTATTATTATGTA-GTAGTATA
9827096 CATATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 19 0.95
24 1 0.05
ACGTcount: A:0.30, C:0.02, G:0.11, T:0.57
Consensus pattern (23 bp):
TATTATTATTATGTAGTAGTATA
Found at i:9828550 original size:14 final size:15
Alignment explanation
Indices: 9828523--9828556 Score: 61
Period size: 14 Copynumber: 2.3 Consensus size: 15
9828513 CCCAACTAGC
9828523 CCAAATACAACCAAA
1 CCAAATACAACCAAA
9828538 CCAAATA-AACCAAA
1 CCAAATACAACCAAA
9828552 CCAAA
1 CCAAA
9828557 ATTAATTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 12 0.63
15 7 0.37
ACGTcount: A:0.62, C:0.32, G:0.00, T:0.06
Consensus pattern (15 bp):
CCAAATACAACCAAA
Found at i:9829723 original size:3 final size:3
Alignment explanation
Indices: 9829715--9829748 Score: 50
Period size: 3 Copynumber: 11.0 Consensus size: 3
9829705 ATTATTTAGT
*
9829715 TTA TTA TTA TTA TTA TTA TTA TTAA CTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA
9829749 GTTTTATTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 26 0.93
4 2 0.07
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:9830025 original size:30 final size:29
Alignment explanation
Indices: 9829958--9830027 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 29
9829948 ATATGTATTT
*
9829958 ATATACAT-TTTTTTACGAATATATATAC
1 ATATACATGTTTTTTACAAATATATATAC
* *
9829986 ATACTTACATGTTTTTTATAAACTTTATATAC
1 ATA--TACATGTTTTTTACAAA-TATATATAC
9830018 ATATACATGT
1 ATATACATGT
9830028 ATATACACAC
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
28 3 0.09
30 12 0.34
31 9 0.26
32 11 0.31
ACGTcount: A:0.37, C:0.11, G:0.04, T:0.47
Consensus pattern (29 bp):
ATATACATGTTTTTTACAAATATATATAC
Found at i:9830618 original size:108 final size:109
Alignment explanation
Indices: 9830392--9830643 Score: 330
Period size: 108 Copynumber: 2.3 Consensus size: 109
9830382 AAAGAAAATT
* * * * * * *
9830392 TTTCTAAATAAGGAAATATCTTGCATTTGGAAGTTCGAGAAAGCGTGCCCTAATGTGTTGGGGTT
1 TTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAGCGTGCCCTAATGTGCTGGGGTT
* *
9830457 CGATTTTTCTTGTTCAACTTAATAGTCAAATATCCTTTTAAAAA
66 CGATTTTTCTCGTTCAACTCAATAGTCAAATATCCTTTTAAAAA
* *
9830501 TTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGGAAA-CGTGCCTTAATGTGCTGGGTT
1 TTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGA-GAAAGCGTGCCCTAATGTGCTGGGGT
* *
9830565 TCGA-TTTTCTCGTTCGAC-CAGATAGTCGAATATCCTTTTAAAAA
65 TCGATTTTTCTCGTTCAACTCA-ATAGTCAAATATCCTTTTAAAAA
* *
9830609 TTTCAAAATAAGGCAATGTTTTGTGCTTGGAAATT
1 TTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATT
9830644 TCAAAATAAG
Statistics
Matches: 126, Mismatches: 15, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
107 1 0.01
108 67 0.53
109 54 0.43
110 4 0.03
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.37
Consensus pattern (109 bp):
TTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAGCGTGCCCTAATGTGCTGGGGTT
CGATTTTTCTCGTTCAACTCAATAGTCAAATATCCTTTTAAAAA
Found at i:9831118 original size:17 final size:17
Alignment explanation
Indices: 9831096--9831129 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
9831086 TAAATTTAAA
9831096 CGGTAATAACATCAAAT
1 CGGTAATAACATCAAAT
9831113 CGGTAATAACATCAAAT
1 CGGTAATAACATCAAAT
9831130 TAACCGAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.18, G:0.12, T:0.24
Consensus pattern (17 bp):
CGGTAATAACATCAAAT
Found at i:9834396 original size:26 final size:26
Alignment explanation
Indices: 9834361--9834411 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
9834351 CAGAGAACCA
9834361 TTAATCAGGAAGCTCACAAAGAGCCT
1 TTAATCAGGAAGCTCACAAAGAGCCT
*
9834387 TTAATTAGGAAGCTCACAAAGAGCC
1 TTAATCAGGAAGCTCACAAAGAGCC
9834412 ATATATCAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.39, C:0.22, G:0.20, T:0.20
Consensus pattern (26 bp):
TTAATCAGGAAGCTCACAAAGAGCCT
Found at i:9834422 original size:26 final size:26
Alignment explanation
Indices: 9834362--9834422 Score: 88
Period size: 26 Copynumber: 2.3 Consensus size: 26
9834352 AGAGAACCAT
*
9834362 TAATCAGGAAGCTCACAAAGAGCCTT
1 TAATCAGGAAGCTCACAAAGAGCCTA
*
9834388 TAATTAGGAAGCTCACAAAGAGCC-A
1 TAATCAGGAAGCTCACAAAGAGCCTA
9834413 TATATCAGGA
1 TA-ATCAGGA
9834423 TGCTTATAAG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
25 2 0.06
26 29 0.94
ACGTcount: A:0.41, C:0.20, G:0.20, T:0.20
Consensus pattern (26 bp):
TAATCAGGAAGCTCACAAAGAGCCTA
Found at i:9834530 original size:25 final size:24
Alignment explanation
Indices: 9834502--9834548 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 24
9834492 TATTAATGGG
9834502 AAGCTCACA-AGAACCATATAACGAA
1 AAGCT-ACAGAGAACCA-ATAACGAA
*
9834527 AAGCTAGAGAGAACCAATAACG
1 AAGCTACAGAGAACCAATAACG
9834549 GGATGCTCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 8 0.40
25 12 0.60
ACGTcount: A:0.51, C:0.21, G:0.17, T:0.11
Consensus pattern (24 bp):
AAGCTACAGAGAACCAATAACGAA
Found at i:9834907 original size:5 final size:5
Alignment explanation
Indices: 9834878--9834916 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
9834868 TAAATTTAAC
* *
9834878 TCAAT TTAAT ACAAT TCATAT TCAAT TCAAT TCAAT TCA
1 TCAAT TCAAT TCAAT TCA-AT TCAAT TCAAT TCAAT TCA
9834917 CATCTTAGGC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
5 24 0.83
6 5 0.17
ACGTcount: A:0.41, C:0.18, G:0.00, T:0.41
Consensus pattern (5 bp):
TCAAT
Found at i:9835797 original size:19 final size:19
Alignment explanation
Indices: 9835756--9835798 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
9835746 CACACGGCCA
* *
9835756 TGTGGACTGGTTCAGCCCG
1 TGTGGAATGGCTCAGCCCG
* *
9835775 TGTGGAATGGCTCATCCCT
1 TGTGGAATGGCTCAGCCCG
9835794 TGTGG
1 TGTGG
9835799 CTCTTGCAGC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.12, C:0.23, G:0.35, T:0.30
Consensus pattern (19 bp):
TGTGGAATGGCTCAGCCCG
Found at i:9835979 original size:17 final size:17
Alignment explanation
Indices: 9835959--9835992 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
9835949 ATATGTTACT
9835959 TTTAGCAATTATCATTG
1 TTTAGCAATTATCATTG
9835976 TTTAGCAATTATCATTG
1 TTTAGCAATTATCATTG
9835993 AACTTTAGGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.12, G:0.12, T:0.47
Consensus pattern (17 bp):
TTTAGCAATTATCATTG
Found at i:9837963 original size:64 final size:64
Alignment explanation
Indices: 9837876--9838082 Score: 256
Period size: 64 Copynumber: 3.2 Consensus size: 64
9837866 AGTGTTGTTA
* *
9837876 GCCCGTATGGTC-CTAAATCACAAACAAT-AGGTCACACGGCTTAGACACATGCCTGTATCTTTG
1 GCCCGTATGATCTCTAAATCACAAACAATGA-GTCACACGGCTTAGACACATGCCCGTATCTTTG
* * *
9837939 GCCCGTGTGATCTCTAAATCACAAACAGTGAGTCACACGGCTTGGACACATGCCCGTATCTTTG
1 GCCCGTATGATCTCTAAATCACAAACAATGAGTCACACGGCTTAGACACATGCCCGTATCTTTG
* * * * * * * *
9838003 GCCCGTATGATCTCTAAATCACAAACAGTGAGTCACATGGCCTGGACACACGCTCGTGTCTTTA
1 GCCCGTATGATCTCTAAATCACAAACAATGAGTCACACGGCTTAGACACATGCCCGTATCTTTG
* *
9838067 GCTCGTATGAACTCTA
1 GCCCGTATGATCTCTA
9838083 CACTAACATG
Statistics
Matches: 128, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
63 10 0.08
64 117 0.91
65 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.26
Consensus pattern (64 bp):
GCCCGTATGATCTCTAAATCACAAACAATGAGTCACACGGCTTAGACACATGCCCGTATCTTTG
Found at i:9841379 original size:32 final size:29
Alignment explanation
Indices: 9841356--9841430 Score: 87
Period size: 32 Copynumber: 2.5 Consensus size: 29
9841346 CAAATAAAGG
*
9841356 AAGAAAAAGAAATAGAAAGAAACAAAGAAAA
1 AAGAAAAAGAAAGAGAAAGAAAC-AA-AAAA
* * *
9841387 AACAAAAAAGAAAGGGAAAGAAAGAAAAAA
1 AA-GAAAAAGAAAGAGAAAGAAACAAAAAA
9841417 AAGAAAAAGAAAGA
1 AAGAAAAAGAAAGA
9841431 AGGGGACGAA
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
29 10 0.27
30 6 0.16
31 4 0.11
32 17 0.46
ACGTcount: A:0.77, C:0.03, G:0.19, T:0.01
Consensus pattern (29 bp):
AAGAAAAAGAAAGAGAAAGAAACAAAAAA
Found at i:9841412 original size:28 final size:29
Alignment explanation
Indices: 9841359--9841429 Score: 94
Period size: 28 Copynumber: 2.6 Consensus size: 29
9841349 ATAAAGGAAG
*
9841359 AAAAAGAAATAGAAA--GAAACAAAGAAA
1 AAAAAGAAAAAGAAAGGGAAACAAAGAAA
* *
9841386 AAACA-AAAAAGAAAGGGAAAGAAAGAAA
1 AAAAAGAAAAAGAAAGGGAAACAAAGAAA
9841414 AAAAAGAAAAAGAAAG
1 AAAAAGAAAAAGAAAG
9841430 AAGGGGACGA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
26 8 0.22
27 4 0.11
28 15 0.41
29 10 0.27
ACGTcount: A:0.77, C:0.03, G:0.18, T:0.01
Consensus pattern (29 bp):
AAAAAGAAAAAGAAAGGGAAACAAAGAAA
Found at i:9841419 original size:19 final size:20
Alignment explanation
Indices: 9841351--9841431 Score: 65
Period size: 19 Copynumber: 4.0 Consensus size: 20
9841341 AAAAACAAAT
* * *
9841351 AAAGGAAGAAAAAGAAATAG
1 AAAGAAAGAAAAAGAAAGAA
* * *
9841371 AAAGAAACAAAGAAAAAACAAA
1 AAAGAAAGAAA-AAGAAA-GAA
**
9841393 AAAGAAAGGGAAAGAAAGAA
1 AAAGAAAGAAAAAGAAAGAA
9841413 AAA-AAAGAAAAAGAAAGAA
1 AAAGAAAGAAAAAGAAAGAA
9841432 GGGGACGAAG
Statistics
Matches: 47, Mismatches: 12, Indels: 5
0.73 0.19 0.08
Matches are distributed among these distances:
19 14 0.30
20 14 0.30
21 10 0.21
22 9 0.19
ACGTcount: A:0.77, C:0.02, G:0.20, T:0.01
Consensus pattern (20 bp):
AAAGAAAGAAAAAGAAAGAA
Found at i:9841420 original size:23 final size:24
Alignment explanation
Indices: 9841379--9841431 Score: 72
Period size: 23 Copynumber: 2.2 Consensus size: 24
9841369 AGAAAGAAAC
**
9841379 AAAGAAAAAACAAAAAAGAAAGGG
1 AAAGAAAAAACAAAAAAGAAAAAG
*
9841403 AAAGAAAGAA-AAAAAAGAAAAAG
1 AAAGAAAAAACAAAAAAGAAAAAG
9841426 AAAGAA
1 AAAGAA
9841432 GGGGACGAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 17 0.65
24 9 0.35
ACGTcount: A:0.79, C:0.02, G:0.19, T:0.00
Consensus pattern (24 bp):
AAAGAAAAAACAAAAAAGAAAAAG
Found at i:9842749 original size:24 final size:24
Alignment explanation
Indices: 9842686--9842737 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
9842676 TTTCTAGAAA
* *
9842686 ATTTAGTATTTATGAGTATAATAT
1 ATTTAGTATTTATTAGCATAATAT
9842710 ATTTAGTATTTATTAGCATAATAT
1 ATTTAGTATTTATTAGCATAATAT
9842734 ATTT
1 ATTT
9842738 GACTTTGATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.37, C:0.02, G:0.10, T:0.52
Consensus pattern (24 bp):
ATTTAGTATTTATTAGCATAATAT
Found at i:9843046 original size:20 final size:19
Alignment explanation
Indices: 9843023--9843107 Score: 68
Period size: 20 Copynumber: 4.3 Consensus size: 19
9843013 AAAATAGTAT
9843023 AAAAAATTTTGAGGG-AATA
1 AAAAAATTTTGAGGGTAA-A
*
9843042 GAAAAAATTATGAGGGGTAAA
1 -AAAAAATTTTGA-GGGTAAA
9843063 AAAAAATTTTGA-GG-AAGA
1 AAAAAATTTTGAGGGTAA-A
*
9843081 ATAAAAATTTCTGAGGAGTACA
1 A-AAAAATTT-TGAGG-GTAAA
9843103 AAAAA
1 AAAAA
9843108 TCATGAGATA
Statistics
Matches: 54, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
17 2 0.04
18 4 0.07
19 8 0.15
20 25 0.46
21 9 0.17
22 5 0.09
23 1 0.02
ACGTcount: A:0.54, C:0.02, G:0.21, T:0.22
Consensus pattern (19 bp):
AAAAAATTTTGAGGGTAAA
Found at i:9843087 original size:40 final size:39
Alignment explanation
Indices: 9843023--9843107 Score: 100
Period size: 40 Copynumber: 2.1 Consensus size: 39
9843013 AAAATAGTAT
*
9843023 AAAAAATTTTGAGGGAATAGAAAAAATTATGAGGGGTAAA
1 AAAAAATTTTGAGGGAATA-AAAAAATTATGAGGAGTAAA
* * *
9843063 AAAAAATTTTGAGGAAGAAT-AAAAATTTCTGAGGAGTACA
1 AAAAAATTTTGAGG--GAATAAAAAAATTATGAGGAGTAAA
9843103 AAAAA
1 AAAAA
9843108 TCATGAGATA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
40 35 0.90
42 4 0.10
ACGTcount: A:0.54, C:0.02, G:0.21, T:0.22
Consensus pattern (39 bp):
AAAAAATTTTGAGGGAATAAAAAAATTATGAGGAGTAAA
Found at i:9843105 original size:19 final size:19
Alignment explanation
Indices: 9843064--9843106 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
9843054 AGGGGTAAAA
*
9843064 AAAAATTTTGAGGAAGAAT
1 AAAAATTTTGAGGAAGAAC
*
9843083 AAAAATTTCTGAGG-AGTAC
1 AAAAATTT-TGAGGAAGAAC
9843102 AAAAA
1 AAAAA
9843107 ATCATGAGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 16 0.76
20 5 0.24
ACGTcount: A:0.53, C:0.05, G:0.19, T:0.23
Consensus pattern (19 bp):
AAAAATTTTGAGGAAGAAC
Found at i:9846214 original size:29 final size:29
Alignment explanation
Indices: 9846180--9846238 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
9846170 AGAACATATC
9846180 TTTTCTATTATCTCATCTTTAGAAAAGAG
1 TTTTCTATTATCTCATCTTTAGAAAAGAG
9846209 TTTTCTATTATCTCATCTTTAGAAAAGAG
1 TTTTCTATTATCTCATCTTTAGAAAAGAG
9846238 T
1 T
9846239 GAGCAAATAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.31, C:0.14, G:0.10, T:0.46
Consensus pattern (29 bp):
TTTTCTATTATCTCATCTTTAGAAAAGAG
Found at i:9847870 original size:41 final size:41
Alignment explanation
Indices: 9847754--9847870 Score: 171
Period size: 41 Copynumber: 2.9 Consensus size: 41
9847744 TTTGGACCTG
* *
9847754 TAGCGGCGTTTTTTGAAAAGCGCCGCTAATGCTCCTGCCTT
1 TAGCGGCGTTTTTTGAAAAGCGCCGCTAATGATCTTGCCTT
* * *
9847795 TAGCGGCATTTTTTAAAAAGCGCCGCTAATGATCTTGTCTT
1 TAGCGGCGTTTTTTGAAAAGCGCCGCTAATGATCTTGCCTT
* *
9847836 TAGCGGCGTTTTGTGAAAAGCGTCGCTAATGATCT
1 TAGCGGCGTTTTTTGAAAAGCGCCGCTAATGATCT
9847871 GGACGTTAGT
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 67 1.00
ACGTcount: A:0.21, C:0.21, G:0.24, T:0.33
Consensus pattern (41 bp):
TAGCGGCGTTTTTTGAAAAGCGCCGCTAATGATCTTGCCTT
Found at i:9847888 original size:41 final size:41
Alignment explanation
Indices: 9847754--9847888 Score: 110
Period size: 41 Copynumber: 3.3 Consensus size: 41
9847744 TTTGGACCTG
* * * * *
9847754 TAGCGGCGTTTTTTGAAAAGCGCCGCTAATGCTCCT-GCCTT
1 TAGCAGCGTTTTGTGAAAAGCGCCGCTAATGAT-CTGGACGT
* * * * * * *
9847795 TAGCGGCATTTTTTAAAAAGCGCCGCTAATGATCTTGTCTT
1 TAGCAGCGTTTTGTGAAAAGCGCCGCTAATGATCTGGACGT
* *
9847836 TAGCGGCGTTTTGTGAAAAGCGTCGCTAATGATCTGGACGT
1 TAGCAGCGTTTTGTGAAAAGCGCCGCTAATGATCTGGACGT
* *
9847877 TAGTAGTGTTTT
1 TAGCAGCGTTTT
9847889 TTAGGAAGCG
Statistics
Matches: 79, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
40 2 0.03
41 77 0.97
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.35
Consensus pattern (41 bp):
TAGCAGCGTTTTGTGAAAAGCGCCGCTAATGATCTGGACGT
Found at i:9847891 original size:82 final size:82
Alignment explanation
Indices: 9847754--9847906 Score: 182
Period size: 82 Copynumber: 1.9 Consensus size: 82
9847744 TTTGGACCTG
* * * * *
9847754 TAGCGGCGTTTTTTGAAAAGCGCCGCTAATGCTCCTGCCTTTAGCGGCATTTTTTAAAAAGCGCC
1 TAGCGGCGTTTTGTGAAAAGCGCCGCTAATGATCCTGACGTTAGCAGCATTTTTTAAAAAGCGCC
9847819 GCTAATGATCTTGTCTT
66 GCTAATGATCTTGTCTT
* * ** **
9847836 TAGCGGCGTTTTGTGAAAAGCGTCGCTAATGAT-CTGGACGTTAGTAGTGTTTTTTAGGAAGCGC
1 TAGCGGCGTTTTGTGAAAAGCGCCGCTAATGATCCT-GACGTTAGCAGCATTTTTTAAAAAGCGC
*
9847900 TGCTAAT
65 CGCTAAT
9847907 AGTAATAAAA
Statistics
Matches: 58, Mismatches: 12, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
81 2 0.03
82 56 0.97
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.34
Consensus pattern (82 bp):
TAGCGGCGTTTTGTGAAAAGCGCCGCTAATGATCCTGACGTTAGCAGCATTTTTTAAAAAGCGCC
GCTAATGATCTTGTCTT
Found at i:9848529 original size:14 final size:15
Alignment explanation
Indices: 9848505--9848533 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
9848495 TCTAGAGGTT
9848505 AGACGTTAGGGTTTA
1 AGACGTTAGGGTTTA
9848520 AGAC-TTAGGGTTTA
1 AGACGTTAGGGTTTA
9848534 GGGTTATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.07, G:0.31, T:0.34
Consensus pattern (15 bp):
AGACGTTAGGGTTTA
Found at i:9848547 original size:43 final size:41
Alignment explanation
Indices: 9848480--9848560 Score: 99
Period size: 43 Copynumber: 1.9 Consensus size: 41
9848470 AAGTGAGATG
*
9848480 CTTAGGGGTTAGGGGTCTAGAGGTTAGACGTTAGGGTTTAAGA
1 CTTAGGGGTTAGGGGTATAGAGGTT-G-CGTTAGGGTTTAAGA
* * * *
9848523 CTTAGGGTTTAGGGTTATATAGGTTGGGTTAGGGTTTA
1 CTTAGGGGTTAGGGGTATAGAGGTTGCGTTAGGGTTTA
9848561 GGGTCTAGAT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
41 11 0.33
42 1 0.03
43 21 0.64
ACGTcount: A:0.21, C:0.05, G:0.38, T:0.36
Consensus pattern (41 bp):
CTTAGGGGTTAGGGGTATAGAGGTTGCGTTAGGGTTTAAGA
Found at i:9848815 original size:7 final size:7
Alignment explanation
Indices: 9848805--9848901 Score: 50
Period size: 7 Copynumber: 13.9 Consensus size: 7
9848795 GGTTTTTTGA
9848805 GTTTGGG
1 GTTTGGG
* *
9848812 GTTTAGT
1 GTTTGGG
* *
9848819 TTTTAGG
1 GTTTGGG
*
9848826 GTTAGGG
1 GTTTGGG
*
9848833 GTTTGTG
1 GTTTGGG
9848840 GTTTGGG
1 GTTTGGG
*
9848847 ATTTGGG
1 GTTTGGG
*
9848854 ATTTGGG
1 GTTTGGG
* * *
9848861 TTTTTGA
1 GTTTGGG
*
9848868 GTTTAGG
1 GTTTGGG
* *
9848875 GTTTAGT
1 GTTTGGG
*
9848882 GTTCGGG
1 GTTTGGG
*
9848889 GTTAGGG
1 GTTTGGG
9848896 GTTTGG
1 GTTTGG
9848902 AAATTTGGGG
Statistics
Matches: 67, Mismatches: 23, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
7 67 1.00
ACGTcount: A:0.09, C:0.01, G:0.43, T:0.46
Consensus pattern (7 bp):
GTTTGGG
Found at i:9848822 original size:21 final size:21
Alignment explanation
Indices: 9848796--9848881 Score: 66
Period size: 21 Copynumber: 4.1 Consensus size: 21
9848786 GGGATTTTTG
9848796 GTTTTTTGAGTTTGGGGTTTA
1 GTTTTTTGAGTTTGGGGTTTA
* * *
9848817 GTTTTTAGGGTTAGGGGTTT-
1 GTTTTTTGAGTTTGGGGTTTA
** * * *
9848837 GTGGTTTGGGATTTGGGATTTG
1 GTTTTTTGAG-TTTGGGGTTTA
* *
9848859 GGTTTTTGAGTTTAGGGTTTA
1 GTTTTTTGAGTTTGGGGTTTA
9848880 GT
1 GT
9848882 GTTCGGGGTT
Statistics
Matches: 47, Mismatches: 16, Indels: 4
0.70 0.24 0.06
Matches are distributed among these distances:
20 7 0.15
21 34 0.72
22 6 0.13
ACGTcount: A:0.10, C:0.00, G:0.38, T:0.51
Consensus pattern (21 bp):
GTTTTTTGAGTTTGGGGTTTA
Found at i:9852533 original size:56 final size:57
Alignment explanation
Indices: 9852439--9853029 Score: 215
Period size: 57 Copynumber: 10.3 Consensus size: 57
9852429 TAAAATTTCT
* * *
9852439 TAACTTATATAATATTAAGATAACTTACATAATATTAAGATAAAATTTCTAATTACA
1 TAACTTATATAATATTAACATAACTTACATAATATTAAGATAAAATATCGAATTACA
* *
9852496 TAACTTATATAATATT-ACATAACTTATATAATGTTAAGATAAAATATCGAATTACA
1 TAACTTATATAATATTAACATAACTTACATAATATTAAGATAAAATATCGAATTACA
* * * * * * ** * *
9852552 TAACTTATACAAAATTAAGATAA--AATATCAA-ATT-ACATAACTTATACAATATTAAGA
1 TAACTTATATAATATTAACATAACTTACAT-AATATTAAGATAAAATAT-CGA-ATT-ACA
* ** * *** * *
9852609 TAAAATT-T-CGA-ATT-ACATAACTTATATAATATTAAGATTACTTTTAT-AATATTAAGA
1 T-AACTTATATAATATTAACATAACTTACATAATATTAAGA-TA-AAATATCGA-ATT-ACA
* ** * ** * *
9852666 TCAAATT-T-CGA-ATT-ACATAACTTATATAATATTAAGATTACTTATAT-AATATTAAGA
1 T-AACTTATATAATATTAACATAACTTACATAATATTAAGA-TA-AAATATCGA-ATT-ACA
* * * *
9852723 TAAAATT-TCT-A-ATT-ACATAACTTATATAATGTTAAGATAAAATATCGAATTACA
1 T-AACTTATATAATATTAACATAACTTACATAATATTAAGATAAAATATCGAATTACA
* * * * * **
9852777 TAACTTATACAATATTGAGATAAAATATGGAATTACATAACT-TATACA-ATATTAAGATAAAAT
1 TAACTTATATAATA-T----TAACATA---ACTTACATAA-TAT-TA-AGATA-AAATATCGAAT
*
9852840 TTC-
54 TACA
* * * ** * *
9852843 GAACTTATATAATATTAAGATTACTTTTATAATATTAAGATCAAATTTCGAATTACA
1 TAACTTATATAATATTAACATAACTTACATAATATTAAGATAAAATATCGAATTACA
* * * *
9852900 TAACTTATATAATATT-ACGATTACTTATATAATATTAAGATAAAATTTCTAATTACA
1 TAACTTATATAATATTAAC-ATAACTTACATAATATTAAGATAAAATATCGAATTACA
* * * *
9852957 TAACTTACATAA-A-TAACATAACTTATACAATGTTAAGATAAAATATCGAATTACA
1 TAACTTATATAATATTAACATAACTTACATAATATTAAGATAAAATATCGAATTACA
*
9853012 TAACTTATACAATATTAA
1 TAACTTATATAATATTAA
9853030 GGTAAAATTT
Statistics
Matches: 428, Mismatches: 69, Indels: 74
0.75 0.12 0.13
Matches are distributed among these distances:
53 4 0.01
54 17 0.04
55 65 0.15
56 81 0.19
57 195 0.46
58 14 0.03
59 4 0.01
61 6 0.01
62 4 0.01
65 10 0.02
66 18 0.04
67 10 0.02
ACGTcount: A:0.48, C:0.09, G:0.05, T:0.38
Consensus pattern (57 bp):
TAACTTATATAATATTAACATAACTTACATAATATTAAGATAAAATATCGAATTACA
Found at i:9852559 original size:37 final size:37
Alignment explanation
Indices: 9852509--9852854 Score: 308
Period size: 37 Copynumber: 9.2 Consensus size: 37
9852499 CTTATATAAT
*
9852509 ATTACATAACTTATATAATGTTAAGATAAAATATCGA
1 ATTACATAACTTATATAATATTAAGATAAAATATCGA
* * *
9852546 ATTACATAACTTATACAAAATTAAGATAAAATATCAA
1 ATTACATAACTTATATAATATTAAGATAAAATATCGA
* *
9852583 ATTACATAACTTATACAATATTAAGATAAAATTTCGA
1 ATTACATAACTTATATAATATTAAGATAAAATATCGA
*** *
9852620 ATTACATAACTTATATAATATTAAGATTACTTTTAT-AA
1 ATTACATAACTTATATAATATTAAGA-TA-AAATATCGA
* * ** * * *
9852658 TATTAAGATCAAATT-T-CGA-ATT-ACATAACTTATAT-AA
1 -ATT-ACAT-AACTTATATAATATTAAGATAA--AATATCGA
* * * *
9852695 TATTAAGATTACTTATATAATATTAAGATAAAATTTCTA
1 -ATT-ACATAACTTATATAATATTAAGATAAAATATCGA
*
9852734 ATTACATAACTTATATAATGTTAAGATAAAATATCGA
1 ATTACATAACTTATATAATATTAAGATAAAATATCGA
* * *
9852771 ATTACATAACTTATACAATATTGAGATAAAATATGGA
1 ATTACATAACTTATATAATATTAAGATAAAATATCGA
* *
9852808 ATTACATAACTTATACAATATTAAGATAAAATTTCGA
1 ATTACATAACTTATATAATATTAAGATAAAATATCGA
*
9852845 ACTTATATAA
1 A-TTACATAA
9852855 TATTAAGATT
Statistics
Matches: 255, Mismatches: 41, Indels: 25
0.79 0.13 0.08
Matches are distributed among these distances:
36 5 0.02
37 207 0.81
38 20 0.08
39 10 0.04
40 9 0.04
41 4 0.02
ACGTcount: A:0.49, C:0.09, G:0.06, T:0.37
Consensus pattern (37 bp):
ATTACATAACTTATATAATATTAAGATAAAATATCGA
Found at i:9852607 original size:74 final size:74
Alignment explanation
Indices: 9852509--9853092 Score: 382
Period size: 74 Copynumber: 7.7 Consensus size: 74
9852499 CTTATATAAT
* * *
9852509 ATTACATAACTTATATAATGTTAAGATAAAATATCGAATTACATAACTTATACAAAATTAAGATA
1 ATTACATAACTTATACAATATTAAGATAAAATATCGAATTACATAACTTATACAATATTAAGATA
9852574 AAATATCAA
66 AAATATCAA
* *
9852583 ATTACATAACTTATACAATATTAAGATAAAATTTCGAATTACATAACTTATATAATATTAAGATT
1 ATTACATAACTTATACAATATTAAGATAAAATATCGAATTACATAACTTATACAATATTAAGA-T
***
9852648 ACTTTTAT-AA
65 A-AAATATCAA
* * * * * * * * *
9852658 TATTAAGATCAAATT-T-CGA-ATT-ACATAACTTATAT-AATATTAAGATTACTTATATAATAT
1 -ATT-ACAT-AACTTATACAATATTAAGATAA--AATATCGA-ATT-ACATAACTTATACAATAT
* *
9852718 TAAGATAAAATTTCTA
59 TAAGATAAAATATCAA
* * *
9852734 ATTACATAACTTATATAATGTTAAGATAAAATATCGAATTACATAACTTATACAATATTGAGATA
1 ATTACATAACTTATACAATATTAAGATAAAATATCGAATTACATAACTTATACAATATTAAGATA
**
9852799 AAATATGGA
66 AAATATCAA
* * *
9852808 ATTACATAACTTATACAATATTAAGATAAAATTTCGAACTTATATAATATTAAGATTACTTTTAT
1 ATTACATAACTTATACAATATTAAGATAAAATATCGAA-TTACATAA-CTT---A-TAC------
* * *
9852873 AATATTAAGATCAAATTTCGA
54 AATATTAAGATAAAATATCAA
* * ** * * * *
9852894 ATTACATAACTTATATAATATTACGATTACTTATAT-AATATTAAGATAAAATT-T-CTA-ATT-
1 ATTACATAACTTATACAATATTAAGA-TA-AAATATCGA-ATT-ACAT-AACTTATACAATATTA
* **
9852954 ACATAACTTA-CATAA
61 AGATAAAATATC--AA
* * *
9852969 ATAACATAACTTATACAATGTTAAGATAAAATATCGAATTACATAACTTATACAATATTAAGGTA
1 ATTACATAACTTATACAATATTAAGATAAAATATCGAATTACATAACTTATACAATATTAAGATA
* *
9853034 AAATTTCGA
66 AAATATCAA
* * * *
9853043 ATTACATAACTTATATAATATTAAGATAAAATTTCTAATTACACAACTTA
1 ATTACATAACTTATACAATATTAAGATAAAATATCGAATTACATAACTTA
9853093 CATAAATTAC
Statistics
Matches: 388, Mismatches: 82, Indels: 80
0.71 0.15 0.15
Matches are distributed among these distances:
71 4 0.01
72 4 0.01
73 14 0.04
74 185 0.48
75 59 0.15
76 24 0.06
77 30 0.08
78 4 0.01
79 1 0.00
80 3 0.01
82 1 0.00
83 1 0.00
86 41 0.11
87 5 0.01
88 10 0.03
89 2 0.01
ACGTcount: A:0.48, C:0.10, G:0.05, T:0.37
Consensus pattern (74 bp):
ATTACATAACTTATACAATATTAAGATAAAATATCGAATTACATAACTTATACAATATTAAGATA
AAATATCAA
Found at i:9852664 original size:57 final size:57
Alignment explanation
Indices: 9852591--9853030 Score: 441
Period size: 57 Copynumber: 7.9 Consensus size: 57
9852581 AAATTACATA
*
9852591 ACTTATACAATATTAAGATAAAATTTCGAATTACATAACTTATATAATATTAAGATT
1 ACTTATATAATATTAAGATAAAATTTCGAATTACATAACTTATATAATATTAAGATT
* *
9852648 ACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATATAATATTAAGATT
1 ACTTATATAATATTAAGATAAAATTTCGAATTACATAACTTATATAATATTAAGATT
* *
9852705 ACTTATATAATATTAAGATAAAATTTCTAATTACATAACTTATATAATGTTAAGA-T
1 ACTTATATAATATTAAGATAAAATTTCGAATTACATAACTTATATAATATTAAGATT
** * * * * * * * * *
9852761 A-AAATATCGA-ATT-ACAT-AACTTATACAATATTGAGATAA--AATATGGA-ATT-ACATA
1 ACTTATAT-AATATTAAGATAAAATT-T-CGA-ATT-ACATAACTTATAT-AATATTAAGATT
*
9852816 ACTTATACAATATTAAGATAAAATTTCG--------AACTTATATAATATTAAGATT
1 ACTTATATAATATTAAGATAAAATTTCGAATTACATAACTTATATAATATTAAGATT
* * *
9852865 ACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATATAATATTACGATT
1 ACTTATATAATATTAAGATAAAATTTCGAATTACATAACTTATATAATATTAAGATT
* * * *
9852922 ACTTATATAATATTAAGATAAAATTTCTAATTACATAACTTACATAA-A-TAACATA
1 ACTTATATAATATTAAGATAAAATTTCGAATTACATAACTTATATAATATTAAGATT
* * * *
9852977 ACTTATACAATGTTAAGATAAAATATCGAATTACATAACTTATACAATATTAAG
1 ACTTATATAATATTAAGATAAAATTTCGAATTACATAACTTATATAATATTAAG
9853031 GTAAAATTTC
Statistics
Matches: 310, Mismatches: 48, Indels: 50
0.76 0.12 0.12
Matches are distributed among these distances:
46 2 0.01
47 1 0.00
48 7 0.02
49 28 0.09
53 4 0.01
54 6 0.02
55 62 0.20
56 16 0.05
57 180 0.58
58 4 0.01
ACGTcount: A:0.47, C:0.09, G:0.06, T:0.38
Consensus pattern (57 bp):
ACTTATATAATATTAAGATAAAATTTCGAATTACATAACTTATATAATATTAAGATT
Found at i:9852751 original size:94 final size:94
Alignment explanation
Indices: 9852458--9852799 Score: 363
Period size: 94 Copynumber: 3.6 Consensus size: 94
9852448 TAATATTAAG
* * * * *
9852458 ATAACTTACATAATATTAAGATAAAATTTCTAATTACATAACTTATATAATATT-ACATAACTTA
1 ATAACTTATATAATATTAAGATAAAATATCGAATTACATAACTTATACAATATTAAGATAACTTA
* * *
9852522 TATAATGTTAAGATAAAATATCGAATTAC
66 TATAATATTAAGATAAAATTTCTAATTAC
* * * *
9852551 ATAACTTATACAAAATTAAGATAAAATATCAAATTACATAACTTATACAATATTAAGATAAAATT
1 ATAACTTATATAATATTAAGATAAAATATCGAATTACATAACTTATACAATATTAAGAT-AACTT
** * * * *
9852616 -T-CGA-ATT-ACAT-AACTTATATAATATTAAG
65 ATATAATATTAAGATAAAATT-TCT-A-ATT-AC
* * * * * *
9852645 ATTACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATATAATATTAAGATTACTTA
1 ATAACTTATATAATATTAAGATAAAATATCGAATTACATAACTTATACAATATTAAGATAACTTA
9852710 TATAATATTAAGATAAAATTTCTAATTAC
66 TATAATATTAAGATAAAATTTCTAATTAC
* *
9852739 ATAACTTATATAATGTTAAGATAAAATATCGAATTACATAACTTATACAATATTGAGATAA
1 ATAACTTATATAATATTAAGATAAAATATCGAATTACATAACTTATACAATATTAAGATAA
9852800 AATATGGAAT
Statistics
Matches: 197, Mismatches: 41, Indels: 21
0.76 0.16 0.08
Matches are distributed among these distances:
90 3 0.02
91 4 0.02
92 3 0.02
93 55 0.28
94 111 0.56
95 8 0.04
96 4 0.02
97 5 0.03
98 4 0.02
ACGTcount: A:0.49, C:0.09, G:0.05, T:0.37
Consensus pattern (94 bp):
ATAACTTATATAATATTAAGATAAAATATCGAATTACATAACTTATACAATATTAAGATAACTTA
TATAATATTAAGATAAAATTTCTAATTAC
Found at i:9852780 original size:188 final size:187
Alignment explanation
Indices: 9852439--9852836 Score: 625
Period size: 188 Copynumber: 2.1 Consensus size: 187
9852429 TAAAATTTCT
*
9852439 TAACTTATATAATATTAAGATAACTTACATAATATTAAGATAAAATTTCTAATTACATAACTTAT
1 TAACTTATATAATATTAAGATAACTTACATAATATTAAGATAAAATTTCGAATTACATAACTTAT
*
9852504 ATAATATTACATAACTTATATAATGTTAAGATAAAATATCGAATTACATAACTTATACAAAATTA
66 ATAATATTACATAACTTATATAATATTAAGATAAAATATCGAATTACATAACTTATACAAAATTA
*
9852569 AGATAAAATATCAAATTACATAACTTATACAATATTAAGATAAAATTTCGAATTACA
131 AGATAAAATATCAAATTACATAACTTATACAATATTAAGATAAAATATCGAATTACA
* ** *
9852626 TAACTTATATAATATTAAGATTACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTAT
1 TAACTTATATAATATTAAGATAACTTACATAATATTAAGATAAAATTTCGAATTACATAACTTAT
* * * * * **
9852691 ATAATATTAAGATTACTTATATAATATTAAGATAAAATTTCTAATTACATAACTTATATAATGTT
66 ATAATATT-ACATAACTTATATAATATTAAGATAAAATATCGAATTACATAACTTATACAAAATT
* * *
9852756 AAGATAAAATATCGAATTACATAACTTATACAATATTGAGATAAAATATGGAATTACA
130 AAGATAAAATATCAAATTACATAACTTATACAATATTAAGATAAAATATCGAATTACA
*
9852814 TAACTTATACAATATTAAGATAA
1 TAACTTATATAATATTAAGATAA
9852837 AATTTCGAAC
Statistics
Matches: 191, Mismatches: 19, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
187 68 0.36
188 123 0.64
ACGTcount: A:0.49, C:0.09, G:0.05, T:0.37
Consensus pattern (187 bp):
TAACTTATATAATATTAAGATAACTTACATAATATTAAGATAAAATTTCGAATTACATAACTTAT
ATAATATTACATAACTTATATAATATTAAGATAAAATATCGAATTACATAACTTATACAAAATTA
AGATAAAATATCAAATTACATAACTTATACAATATTAAGATAAAATATCGAATTACA
Found at i:9852949 original size:217 final size:218
Alignment explanation
Indices: 9852509--9852968 Score: 796
Period size: 217 Copynumber: 2.1 Consensus size: 218
9852499 CTTATATAAT
*
9852509 ATTACATAACTTATATAATGTTAAGATAAAATATCGAATTACATAACTTATACAAAATTAAGATA
1 ATTACATAACTTATATAATGTTAAGATAAAATATCGAATTACATAACTTATACAATATTAAGATA
*
9852574 AAATATCAAATTACATAACTTATACAATATTAAGATAAAATTTCGAATTACATAACTTATATAAT
66 AAATATCGAATTACATAACTTATACAATATTAAGATAAAATTTCG------A-AACTTATATAAT
9852639 ATTAAGATTACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATATAATATTAAGAT
124 ATTAAGATTACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATATAATATTAAGAT
9852704 TACTTATATAATATTAAGATAAAATTTCTA
189 TACTTATATAATATTAAGATAAAATTTCTA
*
9852734 ATTACATAACTTATATAATGTTAAGATAAAATATCGAATTACATAACTTATACAATATTGAGATA
1 ATTACATAACTTATATAATGTTAAGATAAAATATCGAATTACATAACTTATACAATATTAAGATA
*
9852799 AAATATGGAATTACATAACTTATACAATATTAAGATAAAATTTCG-AACTTATATAATATTAAGA
66 AAATATCGAATTACATAACTTATACAATATTAAGATAAAATTTCGAAACTTATATAATATTAAGA
*
9852863 TTACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATATAATATTACGATTACTTAT
131 TTACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATATAATATTAAGATTACTTAT
9852928 ATAATATTAAGATAAAATTTCTA
196 ATAATATTAAGATAAAATTTCTA
*
9852951 ATTACATAACTTACATAA
1 ATTACATAACTTATATAA
9852969 ATAACATAAC
Statistics
Matches: 229, Mismatches: 6, Indels: 8
0.94 0.02 0.03
Matches are distributed among these distances:
217 123 0.54
225 106 0.46
ACGTcount: A:0.48, C:0.09, G:0.05, T:0.38
Consensus pattern (218 bp):
ATTACATAACTTATATAATGTTAAGATAAAATATCGAATTACATAACTTATACAATATTAAGATA
AAATATCGAATTACATAACTTATACAATATTAAGATAAAATTTCGAAACTTATATAATATTAAGA
TTACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATATAATATTAAGATTACTTAT
ATAATATTAAGATAAAATTTCTA
Found at i:9853022 original size:37 final size:37
Alignment explanation
Indices: 9852972--9853092 Score: 188
Period size: 37 Copynumber: 3.3 Consensus size: 37
9852962 TACATAAATA
* *
9852972 ACATAACTTATACAATGTTAAGATAAAATATCGAATT
1 ACATAACTTATACAATATTAAGATAAAATTTCGAATT
*
9853009 ACATAACTTATACAATATTAAGGTAAAATTTCGAATT
1 ACATAACTTATACAATATTAAGATAAAATTTCGAATT
* *
9853046 ACATAACTTATATAATATTAAGATAAAATTTCTAATT
1 ACATAACTTATACAATATTAAGATAAAATTTCGAATT
*
9853083 ACACAACTTA
1 ACATAACTTA
9853093 CATAAATTAC
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 77 1.00
ACGTcount: A:0.48, C:0.12, G:0.06, T:0.35
Consensus pattern (37 bp):
ACATAACTTATACAATATTAAGATAAAATTTCGAATT
Found at i:9853102 original size:9 final size:9
Alignment explanation
Indices: 9853081--9853289 Score: 189
Period size: 9 Copynumber: 23.9 Consensus size: 9
9853071 AAATTTCTAA
*
9853081 TTACACAAC
1 TTACATAAC
*
9853090 TTACATAAA
1 TTACATAAC
9853099 TTACATAAC
1 TTACATAAC
9853108 TTACATAAC
1 TTACATAAC
*
9853117 TTACATAAA
1 TTACATAAC
*
9853126 TTAAATAAC
1 TTACATAAC
*
9853135 TTGCATAAC
1 TTACATAAC
* *
9853144 GTAAATAAC
1 TTACATAAC
9853153 TTACATAA-
1 TTACATAAC
9853161 -TACATAACC
1 TTACATAA-C
*
9853170 TT-CCTAAC
1 TTACATAAC
* *
9853178 TTACATTAT
1 TTACATAAC
*
9853187 TTAGATAA-
1 TTACATAAC
*
9853195 -TACATAGC
1 TTACATAAC
*
9853203 CTACATAAC
1 TTACATAAC
9853212 TTACATAAC
1 TTACATAAC
*
9853221 TTACATAAA
1 TTACATAAC
*
9853230 TTAAATAAC
1 TTACATAAC
*
9853239 TTCCATAAC
1 TTACATAAC
*
9853248 TTCCATAAC
1 TTACATAAC
*
9853257 TCACATAA-
1 TTACATAAC
*
9853265 -TACACAAC
1 TTACATAAC
9853273 TTACATAAC
1 TTACATAAC
9853282 TTACATAA
1 TTACATAA
9853290 TACATAAAAA
Statistics
Matches: 159, Mismatches: 33, Indels: 16
0.76 0.16 0.08
Matches are distributed among these distances:
7 17 0.11
8 3 0.02
9 138 0.87
10 1 0.01
ACGTcount: A:0.45, C:0.21, G:0.02, T:0.32
Consensus pattern (9 bp):
TTACATAAC
Found at i:9853216 original size:104 final size:104
Alignment explanation
Indices: 9853100--9853287 Score: 297
Period size: 104 Copynumber: 1.8 Consensus size: 104
9853090 TTACATAAAT
* *
9853100 TACATAACTTACATAACTTACATAAATTAAATAACTTGCATAACGTAAATAACTTACATAATACA
1 TACATAACTTACATAACTTACATAAATTAAATAACTTCCATAACGTAAATAACTCACATAATACA
* *
9853165 TAACCTT-CCTAACTTACATTATTTAGATAATACATAGCC
66 CAA-CTTACATAACTTACATTATTTAGATAATACATAGCC
* **
9853204 TACATAACTTACATAACTTACATAAATTAAATAACTTCCATAACTTCCATAACTCACATAATACA
1 TACATAACTTACATAACTTACATAAATTAAATAACTTCCATAACGTAAATAACTCACATAATACA
9853269 CAACTTACATAACTTACAT
66 CAACTTACATAACTTACAT
9853288 AATACATAAA
Statistics
Matches: 76, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
103 3 0.04
104 73 0.96
ACGTcount: A:0.45, C:0.21, G:0.02, T:0.32
Consensus pattern (104 bp):
TACATAACTTACATAACTTACATAAATTAAATAACTTCCATAACGTAAATAACTCACATAATACA
CAACTTACATAACTTACATTATTTAGATAATACATAGCC
Found at i:9853279 original size:25 final size:25
Alignment explanation
Indices: 9853245--9853293 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
9853235 TAACTTCCAT
*
9853245 AACTTCCATAACTCACATAATACAC
1 AACTTACATAACTCACATAATACAC
*
9853270 AACTTACATAACTTACATAATACA
1 AACTTACATAACTCACATAATACA
9853294 TAAAAATATA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.47, C:0.27, G:0.00, T:0.27
Consensus pattern (25 bp):
AACTTACATAACTCACATAATACAC
Found at i:9853314 original size:104 final size:104
Alignment explanation
Indices: 9853100--9853325 Score: 287
Period size: 104 Copynumber: 2.2 Consensus size: 104
9853090 TTACATAAAT
* *
9853100 TACATAACTTACATAACTTACATAAATTAAATAACTTGCATAACGTAAATAACTTACATAATACA
1 TACATAACTTACATAACTTACATAAATTAAATAACTTCCATAACGTAAATAACTCACATAATACA
* * * * * *
9853165 TAACCTTCCTAACTTACATTATTTAGATAATACATAGCC
66 CAACCTTCATAACTTACATTATATACATAAAACATAGCA
* **
9853204 TACATAACTTACATAACTTACATAAATTAAATAACTTCCATAACTTCCATAACTCACATAATACA
1 TACATAACTTACATAACTTACATAAATTAAATAACTTCCATAACGTAAATAACTCACATAATACA
* *
9853269 CAA-CTTACATAACTTACA-TA-ATACATAAAAATATATCA
66 CAACCTT-CATAACTTACATTATATACAT-AAAACATAGCA
9853307 TATCATAACTTACATAACT
1 TA-CATAACTTACATAACT
9853326 CATTTATAGT
Statistics
Matches: 106, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
102 4 0.04
103 14 0.13
104 88 0.83
ACGTcount: A:0.46, C:0.20, G:0.02, T:0.32
Consensus pattern (104 bp):
TACATAACTTACATAACTTACATAAATTAAATAACTTCCATAACGTAAATAACTCACATAATACA
CAACCTTCATAACTTACATTATATACATAAAACATAGCA
Found at i:9858434 original size:21 final size:21
Alignment explanation
Indices: 9858401--9858467 Score: 91
Period size: 21 Copynumber: 3.2 Consensus size: 21
9858391 AACTTAAAGT
*
9858401 AGAGGCGGCAGCGAGGGAAGC
1 AGAGGCTGCAGCGAGGGAAGC
*
9858422 A-ACGTCTGCAGCGAGGGAAGC
1 AGA-GGCTGCAGCGAGGGAAGC
*
9858443 AGAGGCTGCAGCGAGAGAAGC
1 AGAGGCTGCAGCGAGGGAAGC
9858464 AGAG
1 AGAG
9858468 CAGAGCAAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
20 1 0.03
21 38 0.95
22 1 0.03
ACGTcount: A:0.31, C:0.19, G:0.45, T:0.04
Consensus pattern (21 bp):
AGAGGCTGCAGCGAGGGAAGC
Found at i:9858823 original size:42 final size:42
Alignment explanation
Indices: 9858776--9858893 Score: 175
Period size: 42 Copynumber: 2.8 Consensus size: 42
9858766 TAGTTTTTGT
*
9858776 AAAAAAGCGCCGCTAAAGAACATGTTCTTTAGTGGCGCTT-AG
1 AAAAAA-CGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAAG
* *
9858818 AAAAAAACGCTGCTAAAGACCATGTTCTTTAGCGGCGCTTAAG
1 -AAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAAG
*
9858861 AAAAAACGCCGCTAAAGAACATGATCTTTAGCG
1 AAAAAACGCCGCTAAAGAACATGTTCTTTAGCG
9858894 CCATTTTTAT
Statistics
Matches: 68, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
42 60 0.88
43 8 0.12
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.22
Consensus pattern (42 bp):
AAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAAG
Found at i:9858961 original size:43 final size:43
Alignment explanation
Indices: 9858867--9858986 Score: 179
Period size: 43 Copynumber: 2.8 Consensus size: 43
9858857 TAAGAAAAAA
* * **
9858867 CGCCGCTAAAGAACATGATCTTTAGC-GCCATTTTTATCTAAG
1 CGCCACTAAAGAACATGGTCTTTAGCGGCGTTTTTTATCTAAG
* *
9858909 CGCCTCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTTCTAAG
1 CGCCACTAAAGAACATGGTCTTTAGCGGCGTTTTTTATCTAAG
9858952 CGCCACTAAAGAACATGGTCTTTAGCGGCGTTTTT
1 CGCCACTAAAGAACATGGTCTTTAGCGGCGTTTTT
9858987 GTTTGTAAAC
Statistics
Matches: 71, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
42 24 0.34
43 47 0.66
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.33
Consensus pattern (43 bp):
CGCCACTAAAGAACATGGTCTTTAGCGGCGTTTTTTATCTAAG
Found at i:9860921 original size:21 final size:19
Alignment explanation
Indices: 9860897--9860965 Score: 68
Period size: 20 Copynumber: 3.4 Consensus size: 19
9860887 AAAATAGTTT
*
9860897 AAAAAATTTTGAGGGAATA
1 AAAAAATTATGAGGGAATA
*
9860916 GAAAAAATTATGAAGGGTATCA
1 -AAAAAATTATG-AGGGAAT-A
9860938 AAAAAATTATG-GGGAAGTA
1 AAAAAATTATGAGGGAA-TA
9860957 CAAAAAATT
1 -AAAAAATT
9860966 TTCGAGGAGT
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
19 5 0.12
20 19 0.45
21 17 0.40
22 1 0.02
ACGTcount: A:0.54, C:0.03, G:0.20, T:0.23
Consensus pattern (19 bp):
AAAAAATTATGAGGGAATA
Found at i:9860982 original size:21 final size:21
Alignment explanation
Indices: 9860917--9860983 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
9860907 GAGGGAATAG
9860917 AAAAAATTATGAAGG--GTATCA
1 AAAAAATTATG-AGGAAGTA-CA
*
9860938 AAAAAATTATGGGGAAGTAC-
1 AAAAAATTATGAGGAAGTACA
*
9860958 AAAAAATTTTCGAGG-AGTACA
1 AAAAAATTAT-GAGGAAGTACA
9860979 AAAAA
1 AAAAA
9860984 TCATAAGATA
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
20 16 0.41
21 20 0.51
22 3 0.08
ACGTcount: A:0.54, C:0.06, G:0.19, T:0.21
Consensus pattern (21 bp):
AAAAAATTATGAGGAAGTACA
Found at i:9864678 original size:17 final size:17
Alignment explanation
Indices: 9864656--9864702 Score: 58
Period size: 18 Copynumber: 2.7 Consensus size: 17
9864646 TTAATTAAGC
**
9864656 TAATATAAAAAAGCATT
1 TAATATAAAAAAGCAAA
*
9864673 TAATATAAAAGAAGGAAA
1 TAATATAAAA-AAGCAAA
9864691 TAATATAAAAAA
1 TAATATAAAAAA
9864703 TAAGGGTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
17 12 0.46
18 14 0.54
ACGTcount: A:0.66, C:0.02, G:0.09, T:0.23
Consensus pattern (17 bp):
TAATATAAAAAAGCAAA
Found at i:9870619 original size:18 final size:17
Alignment explanation
Indices: 9870596--9870629 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
9870586 TTGAATTCCA
9870596 TTTGAAAAGAAACATCAC
1 TTTGAAAAGAAA-ATCAC
*
9870614 TTTGAATAGAAAATCA
1 TTTGAAAAGAAAATCA
9870630 TGAAGTTGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.50, C:0.12, G:0.12, T:0.26
Consensus pattern (17 bp):
TTTGAAAAGAAAATCAC
Found at i:9873554 original size:98 final size:98
Alignment explanation
Indices: 9873382--9873576 Score: 363
Period size: 98 Copynumber: 2.0 Consensus size: 98
9873372 ACAATAAAAT
*
9873382 TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATTCC
1 TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
*
9873447 TCTAGAATCCCAAACTCGGAATATTTCCTTTAC
66 TCTAAAATCCCAAACTCGGAATATTTCCTTTAC
9873480 TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
1 TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
*
9873545 TTTAAAATCCCAAACTCGGAATATTTCCTTTA
66 TCTAAAATCCCAAACTCGGAATATTTCCTTTA
9873577 TTGTTTTTAG
Statistics
Matches: 94, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
98 94 1.00
ACGTcount: A:0.37, C:0.25, G:0.10, T:0.28
Consensus pattern (98 bp):
TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
TCTAAAATCCCAAACTCGGAATATTTCCTTTAC
Found at i:9875023 original size:19 final size:19
Alignment explanation
Indices: 9874999--9875130 Score: 210
Period size: 19 Copynumber: 6.8 Consensus size: 19
9874989 AATCATATAT
9874999 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
* **
9875018 TCTAAGAATATATATCATA
1 TCTAAGATTGCATATCATA
9875037 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
9875056 TCTAAGATTGCATATATCATA
1 TCTAAGATTGC--ATATCATA
9875077 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
9875096 TCTAGGATTGCATATCATA
1 TCTAAGATTGCATATCATA
9875115 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
9875131 CTCAAAAATT
Statistics
Matches: 103, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
19 84 0.82
21 19 0.18
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:9875083 original size:59 final size:59
Alignment explanation
Indices: 9874992--9875129 Score: 212
Period size: 59 Copynumber: 2.4 Consensus size: 59
9874982 ATTACAAAAT
*
9874992 CATAT-AT-TCTAAGATTGC--ATATCATATCTAAGAATATATATCATATCTAAGATTG
1 CATATCATATCTAAGATTGCATATATCATATCTAAGAATACATATCATATCTAAGATTG
* * *
9875047 CATATCATATCTAAGATTGCATATATCATATCTAAGATTGCATATCATATCTAGGATTG
1 CATATCATATCTAAGATTGCATATATCATATCTAAGAATACATATCATATCTAAGATTG
9875106 CATATCATATCTAAGATTGCATAT
1 CATATCATATCTAAGATTGCATAT
9875130 CCTCAAAAAT
Statistics
Matches: 75, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
55 5 0.07
56 2 0.03
57 11 0.15
59 57 0.76
ACGTcount: A:0.38, C:0.14, G:0.10, T:0.38
Consensus pattern (59 bp):
CATATCATATCTAAGATTGCATATATCATATCTAAGAATACATATCATATCTAAGATTG
Found at i:9875355 original size:44 final size:42
Alignment explanation
Indices: 9875306--9875601 Score: 210
Period size: 44 Copynumber: 6.8 Consensus size: 42
9875296 TGCCATCTTC
*
9875306 AGTCTGCCTCACTGTAACTTCA-GGAGGATAAGACTTGCTTATTT
1 AGTCTG-CTCACTGCAACTTCAGGGA-GATAAGACTTGC-TATTT
* **
9875350 AGTCTGCTTCACTGCAACTTCAGGGAGATAAGAC-TG-GATGC
1 AGTCTGC-TCACTGCAACTTCAGGGAGATAAGACTTGCTATTT
* * * * *
9875391 AATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGT-TTT
1 AGTCTGCTCACTGCAACTTCAGGGAGATAAGA-CT-TGCTATTT
* * * *
9875434 AATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGC--TTT
1 AGTCTGCT-CACTGCAACTTCAGGGAGATAAGACT-T--GCTATTT
* * *
9875478 AATCTGCTCGACTGCAACTTTAGGGAGATAAGACTTGCCATCTT
1 AGTCTGCTC-ACTGCAACTTCAGGGAGATAAGACTTGCTAT-TT
* * * *
9875522 CAGTCTGCCCCACTGTAACTT-AAGGAGGATAAGACTTGCTTACTT
1 -AGTCTG-CTCACTGCAACTTCAGGGA-GATAAGACTTGC-TATTT
9875567 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACT
1 AGTCTGCT-CACTGCAACTTCAGGGAGATAAGACT
9875602 AGATGCGATC
Statistics
Matches: 202, Mismatches: 31, Indels: 38
0.75 0.11 0.14
Matches are distributed among these distances:
40 23 0.11
41 11 0.05
43 18 0.09
44 111 0.55
45 36 0.18
46 3 0.01
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (42 bp):
AGTCTGCTCACTGCAACTTCAGGGAGATAAGACTTGCTATTT
Found at i:9875722 original size:217 final size:217
Alignment explanation
Indices: 9875296--9875731 Score: 644
Period size: 217 Copynumber: 2.0 Consensus size: 217
9875286 TAGGAATTAG
* * * *
9875296 TGCCATCTTCAGTCTGCCTCACTGTAACTTCAGGAGGATAAGACTTGCTTATTTAGTCTGCTTCA
1 TGCCATCTTCAGTCTGCCCCACTGTAACTTAAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCA
* *
9875361 CTGCAACTTCAGGGAGATAAGACTGGATGCAATCTGCTCTCTGCAACTTCAGAGAGATAAGATCT
66 CTGCAACTTCAGGGAGATAAGACTAGATGCAATCTACTCTCTGCAACTTCAGAGAGATAAGATCT
* * * * *
9875426 AAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCGACT
131 AAGGTTTTAATCCACTCCACTGCAACATCAGGGAGATAGGATTATCAGCTTCAACCTGCTCGACT
* *
9875491 GCAACTTTAGGGAGATAAGACT
196 GCAACTTGAGGGAGACAAGACT
9875513 TGCCATCTTCAGTCTGCCCCACTGTAACTTAAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCA
1 TGCCATCTTCAGTCTGCCCCACTGTAACTTAAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCA
*
9875578 CTGCAACTTCAGGGAGATAAGACTAGATGCGATCTACTCTCTGCAACTTCAGAGAGATAAGATCT
66 CTGCAACTTCAGGGAGATAAGACTAGATGCAATCTACTCTCTGCAACTTCAGAGAGATAAGATCT
* * *
9875643 AAGGTTTTAATCCACTCCACTGCAAGATCAGGGAGATAGGATCTA-CAATCTTCAACCTTCTCCG
131 AAGGTTTTAATCCACTCCACTGCAACATCAGGGAGATAGGAT-TATC-AGCTTCAACCTGCT-CG
** *
9875707 -CTGCTGC-TGAGGGAGACAAGGCT
193 ACTGCAACTTGAGGGAGACAAGACT
9875730 TG
1 TG
9875732 GTGGCTTAAA
Statistics
Matches: 196, Mismatches: 20, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
217 178 0.91
218 16 0.08
219 2 0.01
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (217 bp):
TGCCATCTTCAGTCTGCCCCACTGTAACTTAAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCA
CTGCAACTTCAGGGAGATAAGACTAGATGCAATCTACTCTCTGCAACTTCAGAGAGATAAGATCT
AAGGTTTTAATCCACTCCACTGCAACATCAGGGAGATAGGATTATCAGCTTCAACCTGCTCGACT
GCAACTTGAGGGAGACAAGACT
Found at i:9875796 original size:217 final size:215
Alignment explanation
Indices: 9875348--9875815 Score: 482
Period size: 217 Copynumber: 2.2 Consensus size: 215
9875338 ACTTGCTTAT
* * * *
9875348 TTAGTCTGCTTCACTGCAACTTCAGGGAGATAAGACTGGATGCAATCTGCTCTCTGCAACTTCAG
1 TTAGTCTACTCCACTGCAACTTCAGGGAGATAAGACTAGATGCAATCTACTCTCTGCAACTTCAG
* * * *
9875413 AGAGATAAGATCTAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTT
66 AGAGATAAGATCTAAGGTTTTAATCCACTCCACTGCAACATCAGGGAGATAGGATTATCAGCTTC
* * * * * *
9875478 AATCTGCTCGACTGCAACTTTAGGGAGATAAGACTTGCCATCTTCAGTCTGCCCCACTGTAACTT
131 AACCTGCTCGACTGCAACTTGAGGGAGACAAGACTTGCCAGCTTAAATCTGCCCCAC-GTAACTT
* *** *
9875543 AAGGAGGATAAGACTTGCTTAC
195 -AGGAAGATAAGACCACCGTAC
* *
9875565 TTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTACTCTCTGCAACTTCAG
1 TTAGTCTACTCCACTGCAACTTCAGGGAGATAAGACTAGATGCAATCTACTCTCTGCAACTTCAG
* *
9875630 AGAGATAAGATCTAAGGTTTTAATCCACTCCACTGCAAGATCAGGGAGATAGGATCTA-CAATCT
66 AGAGATAAGATCTAAGGTTTTAATCCACTCCACTGCAACATCAGGGAGATAGGAT-TATC-AGCT
* ** * ***
9875694 TCAACCTTCTCCG-CTGCTGC-TGAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCAC-TA
129 TCAACCTGCT-CGACTGCAACTTGAGGGAGACAAGACTTGCCAGCTTAAATCTGC--CCCACGTA
*
9875756 TCTT-GGAAAGATAAGATCCACCGT-C
191 ACTTAGG-AAGATAAGA-CCACCGTAC
* * **
9875781 TTCGATCTACTCCACTACTGCTT-AGGGAGATAAGA
1 TTAG-TCTACTCCACTGCAACTTCAGGGAGATAAGA
9875816 TCTACAATCT
Statistics
Matches: 209, Mismatches: 34, Indels: 17
0.80 0.13 0.07
Matches are distributed among these distances:
215 2 0.01
216 24 0.11
217 160 0.77
218 16 0.08
219 7 0.03
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.28
Consensus pattern (215 bp):
TTAGTCTACTCCACTGCAACTTCAGGGAGATAAGACTAGATGCAATCTACTCTCTGCAACTTCAG
AGAGATAAGATCTAAGGTTTTAATCCACTCCACTGCAACATCAGGGAGATAGGATTATCAGCTTC
AACCTGCTCGACTGCAACTTGAGGGAGACAAGACTTGCCAGCTTAAATCTGCCCCACGTAACTTA
GGAAGATAAGACCACCGTAC
Found at i:9875869 original size:132 final size:132
Alignment explanation
Indices: 9875672--9876060 Score: 670
Period size: 132 Copynumber: 2.9 Consensus size: 132
9875662 CTGCAAGATC
* *
9875672 AGGGAGATAGGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAGGCTTGGTGGC
1 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGTTGCTGCTGAGGGAGACAAGGCTTGGTGGC
* *
9875737 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATCCACCGTCTTCGATCTACTCCACTACTGC
66 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTGCTCCACTACTGC
9875802 TT
131 TT
* *
9875804 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGTTGTTGTTGAGGGAGACAAGGCTTGGTGGC
1 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGTTGCTGCTGAGGGAGACAAGGCTTGGTGGC
*
9875869 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCATCTTCGATCTGCTCCACTACTGC
66 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTGCTCCACTACTGC
9875934 TT
131 TT
* * *
9875936 AGGGAGATAAGATCTACAATCTTCAACCTTCTTCGTTGCTGCTCAGGGAAACAAGGCTTGGTGGC
1 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGTTGCTGCTGAGGGAGACAAGGCTTGGTGGC
* *
9876001 TTAAATCTGCTTCCCACTATCTTAGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACT
66 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTGCTCCACT
9876061 GTCAATGTAG
Statistics
Matches: 242, Mismatches: 15, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
132 242 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (132 bp):
AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGTTGCTGCTGAGGGAGACAAGGCTTGGTGGC
TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTGCTCCACTACTGC
TT
Found at i:9877348 original size:18 final size:18
Alignment explanation
Indices: 9877304--9877367 Score: 58
Period size: 18 Copynumber: 3.5 Consensus size: 18
9877294 GGCCTCTCCA
*
9877304 TTTTCTTTTCTTTTTTCT
1 TTTTCTTTTCTTTTTTGT
**
9877322 TTCACTTTTCTTTTTTGT
1 TTTTCTTTTCTTTTTTGT
* *
9877340 TTTTGTTTTTGTTTTTTTGT
1 TTTT-CTTTT-CTTTTTTGT
9877360 TTTT-TTTT
1 TTTTCTTTT
9877368 TGAATCTGAA
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
18 21 0.57
19 4 0.11
20 12 0.32
ACGTcount: A:0.02, C:0.09, G:0.06, T:0.83
Consensus pattern (18 bp):
TTTTCTTTTCTTTTTTGT
Found at i:9877355 original size:20 final size:19
Alignment explanation
Indices: 9877332--9877369 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 19
9877322 TTCACTTTTC
9877332 TTTTTTGTTTTTGTTTTTGT
1 TTTTTTGTTTTT-TTTTTGT
9877352 TTTTTTGTTTTTTTTTTG
1 TTTTTTGTTTTTTTTTTG
9877370 AATCTGAACT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87
Consensus pattern (19 bp):
TTTTTTGTTTTTTTTTTGT
Found at i:9877356 original size:14 final size:13
Alignment explanation
Indices: 9877327--9877368 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
9877317 TTTCTTTCAC
* *
9877327 TTTTCTTTTTTGT
1 TTTTGTTTTTTTT
9877340 TTTTGTTTTTGTTT
1 TTTTGTTTTT-TTT
9877354 TTTTGTTTTTTTT
1 TTTTGTTTTTTTT
9877367 TT
1 TT
9877369 GAATCTGAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
13 14 0.54
14 12 0.46
ACGTcount: A:0.00, C:0.02, G:0.10, T:0.88
Consensus pattern (13 bp):
TTTTGTTTTTTTT
Found at i:9882034 original size:98 final size:98
Alignment explanation
Indices: 9881862--9882056 Score: 354
Period size: 98 Copynumber: 2.0 Consensus size: 98
9881852 ACAATAAAAT
* *
9881862 TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACGCAATACGTTAGGGCACGATTCC
1 TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
*
9881927 TCTAGAATCCCAAACTCGGAATATTTCCTTTAC
66 TCTAAAATCCCAAACTCGGAATATTTCCTTTAC
9881960 TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
1 TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
*
9882025 TTTAAAATCCCAAACTCGGAATATTTCCTTTA
66 TCTAAAATCCCAAACTCGGAATATTTCCTTTA
9882057 TTGTTTTTAG
Statistics
Matches: 93, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 93 1.00
ACGTcount: A:0.37, C:0.24, G:0.11, T:0.28
Consensus pattern (98 bp):
TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
TCTAAAATCCCAAACTCGGAATATTTCCTTTAC
Found at i:9883546 original size:19 final size:19
Alignment explanation
Indices: 9883522--9883653 Score: 201
Period size: 19 Copynumber: 6.8 Consensus size: 19
9883512 AATCATATAT
9883522 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
**
9883541 TCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATA
*
9883560 TCTAAGACTGCATATCATA
1 TCTAAGATTGCATATCATA
9883579 TCTAAGATTGCATATATCATA
1 TCTAAGATTGC--ATATCATA
*
9883600 TCTAAGATTGCACATCATA
1 TCTAAGATTGCATATCATA
*
9883619 TCTAGGATTGCATATCATA
1 TCTAAGATTGCATATCATA
9883638 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
9883654 CTCAAAAATT
Statistics
Matches: 101, Mismatches: 10, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
19 82 0.81
21 19 0.19
ACGTcount: A:0.36, C:0.17, G:0.11, T:0.36
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:9883606 original size:59 final size:59
Alignment explanation
Indices: 9883515--9883652 Score: 203
Period size: 59 Copynumber: 2.4 Consensus size: 59
9883505 ATTACAAAAT
* *
9883515 CATAT-AT-TCTAAGATTGC--ATATCATATCTAAGATTATATATCATATCTAAGACTG
1 CATATCATATCTAAGATTGCATATATCATATCTAAGATTACACATCATATCTAAGACTG
* * *
9883570 CATATCATATCTAAGATTGCATATATCATATCTAAGATTGCACATCATATCTAGGATTG
1 CATATCATATCTAAGATTGCATATATCATATCTAAGATTACACATCATATCTAAGACTG
9883629 CATATCATATCTAAGATTGCATAT
1 CATATCATATCTAAGATTGCATAT
9883653 CCTCAAAAAT
Statistics
Matches: 74, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
55 5 0.07
56 2 0.03
57 11 0.15
59 56 0.76
ACGTcount: A:0.37, C:0.16, G:0.10, T:0.37
Consensus pattern (59 bp):
CATATCATATCTAAGATTGCATATATCATATCTAAGATTACACATCATATCTAAGACTG
Found at i:9884675 original size:20 final size:20
Alignment explanation
Indices: 9884652--9884704 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 20
9884642 GAGGGAATAG
9884652 AAAAAATCATGAGGAAGTAC
1 AAAAAATCATGAGGAAGTAC
*
9884672 AAAAAATTTC-T-AGGGAGTAC
1 AAAAAA--TCATGAGGAAGTAC
*
9884692 AGAAAATCATGAG
1 AAAAAATCATGAG
9884705 ATAATATCGA
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
18 2 0.07
19 1 0.04
20 21 0.78
21 1 0.04
22 2 0.07
ACGTcount: A:0.51, C:0.09, G:0.21, T:0.19
Consensus pattern (20 bp):
AAAAAATCATGAGGAAGTAC
Found at i:9887000 original size:20 final size:20
Alignment explanation
Indices: 9886969--9887006 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
9886959 ACTCTCTAAG
9886969 AAAATAATGAAATGAAATACA
1 AAAATAATGAAAT-AAATACA
9886990 AAAATAA-GAAATAAATA
1 AAAATAATGAAATAAATA
9887007 TATTGAAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 5 0.29
20 5 0.29
21 7 0.41
ACGTcount: A:0.71, C:0.03, G:0.08, T:0.18
Consensus pattern (20 bp):
AAAATAATGAAATAAATACA
Found at i:9891611 original size:218 final size:218
Alignment explanation
Indices: 9891375--9892368 Score: 1487
Period size: 218 Copynumber: 4.6 Consensus size: 218
9891365 ATATTTGATA
* * * ** *
9891375 CGATCTATTCTACTGTAACTTCAGAGAGATACGATCCTTTATTTTAATCCACTCCACTGAAATCT
1 CGATCTACTCTACTGTAACCTCAGAGAGATAAGATCCTAAATTTTAATCCGCTCCACTGAAATCT
** ** * *
9891440 CAAGGG-GATAGGATAGTGTCTTCAATCTGCTCCGCCATAATCTCAGGGAGATAAGATCTATAGC
66 C-AGGGAGATAGGATAGTGTCTTGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGC
* * *
9891504 TTCAATCTGCTTCAACGTAATCTCGGGGAGATAAGATTTGAATTTCTTCGGTCTACTCCACTGTA
130 TTCAATCTGCTCCAACGTAATCTCGGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTA
9891569 ACCTCAGGGAGATAAGACCAGATG
195 ACCTCAGGGAGATAAGACCAGATG
* *
9891593 CGATCTACTCTACTGTAACCTCAGAGTGATAAGGTCCTAAATTTTAATCCGCTCCACT-ATAA-C
1 CGATCTACTCTACTGTAACCTCAGAGAGATAAGATCCTAAATTTTAATCCGCTCCACTGA-AATC
9891656 TTCAGGGAGATAGGATAGTGTCTTGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGG
65 -TCAGGGAGATAGGATAGTGTCTTGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGG
* *
9891721 CTTCAATCTGCTCCAACGTAATCTCGGGGAGATAAGATCTAAAATTCTTCGGTCTACTCCACTAT
129 CTTCAATCTGCTCCAACGTAATCTCGGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGT
9891786 AACCTCAGGGAGATAAGACCAGATG
194 AACCTCAGGGAGATAAGACCAGATG
*
9891811 CGATCTACTCTACTGTAACCTCAGAGAGATAAGATTCTAAATTTTAATCCGCTCCACTGAAATCT
1 CGATCTACTCTACTGTAACCTCAGAGAGATAAGATCCTAAATTTTAATCCGCTCCACTGAAATCT
* **
9891876 CAGGGGGATAGGATAGTGTCTTGGATCTGCTCCGCCATAATCTCAGGGAGATAAGATCTCTGGCT
66 CAGGGAGATAGGATAGTGTCTTGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCT
9891941 TCAATCTGCTCCAACGTAATCTCGGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAA
131 TCAATCTGCTCCAACGTAATCTCGGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAA
*
9892006 CCTCAGGGAGATAAGACCTGATG
196 CCTCAGGGAGATAAGACCAGATG
* * *
9892029 CGATCTACTCTACTATAACCTCAGAGAGATAAGATCCTAAATTTTAATCAGCTCCACTGTAA-CT
1 CGATCTACTCTACTGTAACCTCAGAGAGATAAGATCCTAAATTTTAATCCGCTCCACTGAAATC-
*
9892093 TCAGGGAGATAGGATAGTGTCTTGGATCTGCTTCGCTGTAATCTCAGGGAGATAAGATCTCTGGC
65 TCAGGGAGATAGGATAGTGTCTTGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGC
* * * *
9892158 TTCAATCTGCTCC-ACTGTAACCTCAGGGAGATAAGATCTTAAATTCTTCGGTCTACTCTACTGT
130 TTCAATCTGCTCCAAC-GTAATCTCGGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGT
*
9892222 AACCTCAGGGAGATAAGACCTGATG
194 AACCTCAGGGAGATAAGACCAGATG
* * * * * ** *
9892247 CGATTTACTCTGCTGTAACTTCAGAAATATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCT
1 CGATCTACTCTACTGTAACCTCAGAGAGATAAGATCCTAAATTTTAATCCGCTCCACTGAAATCT
* **
9892312 CAGGGAGATAGGATTACTAG-CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGA
66 CAGGGAGATAGGA-TAGT-GTCTTGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGA
9892369 CCTGATACGA
Statistics
Matches: 713, Mismatches: 53, Indels: 19
0.91 0.07 0.02
Matches are distributed among these distances:
217 9 0.01
218 663 0.93
219 40 0.06
220 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.29
Consensus pattern (218 bp):
CGATCTACTCTACTGTAACCTCAGAGAGATAAGATCCTAAATTTTAATCCGCTCCACTGAAATCT
CAGGGAGATAGGATAGTGTCTTGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCT
TCAATCTGCTCCAACGTAATCTCGGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAA
CCTCAGGGAGATAAGACCAGATG
Found at i:9891734 original size:87 final size:87
Alignment explanation
Indices: 9891638--9893231 Score: 485
Period size: 85 Copynumber: 18.4 Consensus size: 87
9891628 CCTAAATTTT
* * * * *
9891638 AATCCGCTCCACTATAACTTCAGGGAGATAGGATAGTGTCTTGGATCTGCTCCGCTGTAATCTCA
1 AATCTGCTCCACTGTAACTTCAGGGAGATAAGATACTGTCTTGGATCTGCTCCACTGTAATCTCA
9891703 GGGAGATAAGATCTCTGGCTTC
66 GGGAGATAAGATCTCTGGCTTC
* * * *
9891725 AATCTGCTCCAAC-GTAA-TCTCGGGGAGATAAGAT-CTAAAATTCTTCGG-TCTACTCCACTAT
1 AATCTGCTCC-ACTGTAACT-TCAGGGAGATAAGATACT----GTCTT-GGATCTGCTCCACTGT
* * * *
9891786 AACCTCAGGGAGATAAGA-C-C-AGATGC
59 AATCTCAGGGAGATAAGATCTCTGGCTTC
* * * * * * * ** * *
9891812 GATCTACTCTACTGTAACCTCAGAGAGATAAGATTCTAAAT-TTTAATCCGCTCCACTGAAATCT
1 AATCTGCTCCACTGTAACTTCAGGGAGATAAGATACT--GTCTTGGATCTGCTCCACTGTAATCT
* * ** * *
9891876 CAGGGGGATAGGAT-AGTGTCTTG
64 CAGGGAGATAAGATCTCTGGCTTC
* * ** * * **
9891899 GATCTGCTCCGCCATAA-TCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCAAC-GTAATC
1 AATCTGCTCCACTGTAACT-TCAGGGAGATAAGAT-ACTGTCTTGGATCTGCTCC-ACTGTAATC
* * *
9891962 TCGGGGAGATAAGATCTGAAAT-TCTTC
63 TCAGGGAGATAAGATCT---CTGGCTTC
** * * * * * * * *
9891989 GGTCTACTCCACTGTAACCTCAGGGAGATAAGA-CCTG--ATGCGATCTACTCTACTATAACCTC
1 AATCTGCTCCACTGTAACTTCAGGGAGATAAGATACTGTCTTG-GATCTGCTCCACTGTAATCTC
* *** *
9892051 AGAGAGATAAGATC-CTAAATTTT
65 AGGGAGATAAGATCTCT-GGCTTC
* * * * *
9892074 AATCAGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTGGATCTGCTTCGCTGTAATCTCA
1 AATCTGCTCCACTGTAACTTCAGGGAGATAAGATACTGTCTTGGATCTGCTCCACTGTAATCTCA
9892139 GGGAGATAAGATCTCTGGCTTC
66 GGGAGATAAGATCTCTGGCTTC
* * * *
9892161 AATCTGCTCCACTGTAACCTCAGGGAGATAAGAT-CTTAAATTCTTCGG-TCTACTCTACTGTAA
1 AATCTGCTCCACTGTAACTTCAGGGAGATAAGATAC-T---GTCTT-GGATCTGCTCCACTGTAA
* * *
9892224 CCTCAGGGAGATAAGA-C-CT-GATGC
61 TCTCAGGGAGATAAGATCTCTGGCTTC
* * * ** ** * * * * ** *
9892248 GATTTACTCTGCTGTAACTTCAGAAATATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTC
1 AATCTGCTCCACTGTAACTTCAGGGAGATAAGATACTGT-CTTGGATCTGCTCCACTGTAATCTC
* *
9892313 AGGGAGATAGGAT-TACTAGCTTC
65 AGGGAGATAAGATCT-CTGGCTTC
* * * ** * *
9892336 AATCTGCTCCGCTGTAA-TCTCAGGGAGATAAGA-CCTG-ATACGATCTACTCTACTGTAA-CTT
1 AATCTGCTCCACTGTAACT-TCAGGGAGATAAGATACTGTCTTGGATCTGCTCCACTGTAATC-T
* * * *** *
9892397 AAGAGAGATAAGATCTTTTATTTT
64 CAGGGAGATAAGATCTCTGGCTTC
* * * ** *
9892421 AATCCGCTCCACTGTAA-TCTCAGGGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCT
1 AATCTGCTCCACTGTAACT-TCAGGGAGATAAGA-TACTGTCTTGGATCTGCTCCACTGTAATCT
* * *
9892485 CAGGGAAATAAGA-C-CT-GATAC
64 CAGGGAGATAAGATCTCTGGCTTC
* * * * * * * * ** *
9892506 GATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTTATTTTAAT-TCCCTCCACTGTAATCT
1 AATCTGCTCCACTGTAACTTCAGGGAGATAAGATACTGT-CTTGGATCT-GCTCCACTGTAATCT
* ***
9892570 CAGGGAGATAGGAT-TACTATATTC
64 CAGGGAGATAAGATCT-CTGGCTTC
* * * * ** * * *
9892594 AATCTTCTCCGCTGTAA-TCTCAGGGAGATGAGAT-CTG-ATACGATCTTCTCTACTGGAA-CTT
1 AATCTGCTCCACTGTAACT-TCAGGGAGATAAGATACTGTCTTGGATCTGCTCCACTGTAATC-T
* *** *
9892655 CAGAGAGATAAGATC-CTTTATTTT
64 CAGGGAGATAAGATCTC-TGGCTTC
* * * * ** * **
9892679 AATCCGCTCCACTGTAA-TCTCAGAGAGATAGGATTACTATCTTCAATCTACTCCGTTGTAATCT
1 AATCTGCTCCACTGTAACT-TCAGGGAGATAAGA-TACTGTCTTGGATCTGCTCCACTGTAATCT
* *
9892743 CAGGGAGATAAGA--TCT-GATAC
64 CAGGGAGATAAGATCTCTGGCTTC
* * * * * * * ** *
9892764 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTC
1 AATCTGCTCCACTGTAACTTCAGGGAGATAAGATACTGT-CTTGGATCTGCTCCACTGTAATCTC
* **
9892829 AGGGAGATAGGAT-TACTATCTTC
65 AGGGAGATAAGATCT-CTGGCTTC
* ** * ** ** *
9892852 AATTTGCTCTGCTGTAA-TCTCAGGGAGATAAGAT-CTG-ATACGATCCACTCTACTGTAA-CTT
1 AATCTGCTCCACTGTAACT-TCAGGGAGATAAGATACTGTCTTGGATCTGCTCCACTGTAATC-T
* *** *
9892913 CAGAGAGATAAGATC-CTTTATTTT
64 CAGGGAGATAAGATCTC-TGGCTTC
** * * ** *
9892937 AATCCACTCCACTGTAA-TCTCAGGGAGATAGGATTATCAG-CTTCAATCTGCTCCGCTGTAATC
1 AATCTGCTCCACTGTAACT-TCAGGGAGATAAGA-TA-CTGTCTTGGATCTGCTCCACTGTAATC
* *
9893000 TCAGGGAGATAAGA---CTGGATAC
63 TCAGGGAGATAAGATCTCTGGCTTC
* * * * * ** **
9893022 GATCTACTCTACTGTAACTTCAGAGAGATAAGAT-CTGTGATTTTAATCCACTCCACTGTAATCT
1 AATCTGCTCCACTGTAACTTCAGGGAGATAAGATACTGT--CTTGGATCTGCTCCACTGTAATCT
* *
9893086 CAGGGAGATAGGAT-TACTAGCTTC
64 CAGGGAGATAAGATCT-CTGGCTTC
* * * ** *
9893110 AATCTGCTCCACTGTAA-TCTCAGGGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCT
1 AATCTGCTCCACTGTAACT-TCAGGGAGATAAGATACTGT-CTTGGATCTGCTCCACTGTAATCT
* **
9893174 CAGGGAGATAGGAT-TACTATCTTC
64 CAGGGAGATAAGATCT-CTGGCTTC
**
9893198 AATCTGCTCCGTTGTAA-TCTCAGGGAGATAAGAT
1 AATCTGCTCCACTGTAACT-TCAGGGAGATAAGAT
9893232 CTGAAATTCT
Statistics
Matches: 1115, Mismatches: 303, Indels: 177
0.70 0.19 0.11
Matches are distributed among these distances:
82 2 0.00
83 1 0.00
84 17 0.02
85 425 0.38
86 23 0.02
87 246 0.22
88 297 0.27
89 8 0.01
90 91 0.08
91 5 0.00
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (87 bp):
AATCTGCTCCACTGTAACTTCAGGGAGATAAGATACTGTCTTGGATCTGCTCCACTGTAATCTCA
GGGAGATAAGATCTCTGGCTTC
Found at i:9892393 original size:129 final size:129
Alignment explanation
Indices: 9892218--9893142 Score: 1507
Period size: 129 Copynumber: 7.2 Consensus size: 129
9892208 GTCTACTCTA
* * * * * *
9892218 CTGTAACCTCAGGGAGATAAGACCTGATGCGATTTACTCTGCTGTAACTTCAGAAATATAAGATC
1 CTGTAATCTCAGGGAGATAAGACCTGATACGATCTACTCTACTGTAACTTCAGAGAGATAAGATC
*
9892283 CTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCG
66 CTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATCTGCTCCG
*
9892347 CTGTAATCTCAGGGAGATAAGACCTGATACGATCTACTCTACTGTAACTTAAGAGAGATAAGATC
1 CTGTAATCTCAGGGAGATAAGACCTGATACGATCTACTCTACTGTAACTTCAGAGAGATAAGATC
*
9892412 TTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATCTGCTCCG
66 CTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATCTGCTCCG
* *
9892476 CTGTAATCTCAGGGAAATAAGACCTGATACGATCTACTCTACTATAACTTCAGAGAGATAAGATC
1 CTGTAATCTCAGGGAGATAAGACCTGATACGATCTACTCTACTGTAACTTCAGAGAGATAAGATC
* *
9892541 CTTTATTTTAATTCC-CTCCACTGTAATCTCAGGGAGATAGGATTACTATATTCAATCTTCTCCG
66 CTTTATTTTAA-TCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATCTGCTCCG
* * * *
9892605 CTGTAATCTCAGGGAGATGAGATCTGATACGATCTTCTCTACTGGAACTTCAGAGAGATAAGATC
1 CTGTAATCTCAGGGAGATAAGACCTGATACGATCTACTCTACTGTAACTTCAGAGAGATAAGATC
* *
9892670 CTTTATTTTAATCCGCTCCACTGTAATCTCAGAGAGATAGGATTACTATCTTCAATCTACTCCG
66 CTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATCTGCTCCG
* *
9892734 TTGTAATCTCAGGGAGATAAGATCTGATACGATCTACTCTACTGTAACTTCAGAGAGATAAGATC
1 CTGTAATCTCAGGGAGATAAGACCTGATACGATCTACTCTACTGTAACTTCAGAGAGATAAGATC
* *
9892799 CTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATTTGCTCTG
66 CTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATCTGCTCCG
* *
9892863 CTGTAATCTCAGGGAGATAAGATCTGATACGATCCACTCTACTGTAACTTCAGAGAGATAAGATC
1 CTGTAATCTCAGGGAGATAAGACCTGATACGATCTACTCTACTGTAACTTCAGAGAGATAAGATC
* *
9892928 CTTTATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTA-TCAGCTTCAATCTGCTCCG
66 CTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACT-ATCTTCAATCTGCTCCG
9892992 CTGTAATCTCAGGGAGATAAGA-CTGGATACGATCTACTCTACTGTAACTTCAGAGAGATAAGAT
1 CTGTAATCTCAGGGAGATAAGACCT-GATACGATCTACTCTACTGTAACTTCAGAGAGATAAGAT
* * *
9893056 -CTGTGATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCC
65 CCT-TTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATCTGCTCC
*
9893120 A
129 G
9893121 CTGTAATCTCAGGGAGATAAGA
1 CTGTAATCTCAGGGAGATAAGA
9893143 TCCTTTATTT
Statistics
Matches: 749, Mismatches: 41, Indels: 12
0.93 0.05 0.01
Matches are distributed among these distances:
128 8 0.01
129 737 0.98
130 4 0.01
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31
Consensus pattern (129 bp):
CTGTAATCTCAGGGAGATAAGACCTGATACGATCTACTCTACTGTAACTTCAGAGAGATAAGATC
CTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATCTGCTCCG
Found at i:9894469 original size:7 final size:7
Alignment explanation
Indices: 9894451--9894497 Score: 71
Period size: 7 Copynumber: 7.0 Consensus size: 7
9894441 TTAGCCTCTC
9894451 CATTTTT
1 CATTTTT
9894458 C-TTTTT
1 CATTTTT
9894464 CATTTTT
1 CATTTTT
9894471 CATTTTT
1 CATTTTT
*
9894478 CA-TTCT
1 CATTTTT
9894484 CATTTTT
1 CATTTTT
9894491 CATTTTT
1 CATTTTT
9894498 TTTACTCAGA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
6 11 0.31
7 25 0.69
ACGTcount: A:0.13, C:0.17, G:0.00, T:0.70
Consensus pattern (7 bp):
CATTTTT
Found at i:9894469 original size:13 final size:14
Alignment explanation
Indices: 9894451--9894497 Score: 71
Period size: 13 Copynumber: 3.5 Consensus size: 14
9894441 TTAGCCTCTC
9894451 CATTTTTC-TTTTT
1 CATTTTTCATTTTT
9894464 CATTTTTCATTTTT
1 CATTTTTCATTTTT
*
9894478 CA-TTCTCATTTTT
1 CATTTTTCATTTTT
9894491 CATTTTT
1 CATTTTT
9894498 TTTACTCAGA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
13 20 0.67
14 10 0.33
ACGTcount: A:0.13, C:0.17, G:0.00, T:0.70
Consensus pattern (14 bp):
CATTTTTCATTTTT
Found at i:9894505 original size:20 final size:20
Alignment explanation
Indices: 9894451--9894497 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
9894441 TTAGCCTCTC
* *
9894451 CATTTTTCTTTTTCATTTTT
1 CATTTTTCATTCTCATTTTT
9894471 CATTTTTCATTCTCATTTTT
1 CATTTTTCATTCTCATTTTT
9894491 CATTTTT
1 CATTTTT
9894498 TTTACTCAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.13, C:0.17, G:0.00, T:0.70
Consensus pattern (20 bp):
CATTTTTCATTCTCATTTTT
Found at i:9901941 original size:218 final size:218
Alignment explanation
Indices: 9901697--9902622 Score: 1507
Period size: 218 Copynumber: 4.2 Consensus size: 218
9901687 ATCTGATACT
* * * ** * *
9901697 ATCTATTCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTAATCCACTCCACTG-AAATCTC
1 ATCTACTCTACTGTAACCTCAGAGAGATAAGATCCTAAATTTTAATCCGCTCCACTGTAACT-TC
* ** **
9901761 AGGGGGATAGGATAGTGTCTTCAATCTGCTCCGCCATAATCTCAGGGAGATAAGATCTCTGGCTT
65 AGGGAGATAGGATAGTGTCTTGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTT
* * *
9901826 CAATCTGCTTCAACGTAATCTCGAGGAGATAAGATTTGAATTTCTTCGGTCTACTCCACTGTAAC
130 CAATCTGCTCCAACGTAATCTCGAGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAAC
9901891 CTCAGGGAGATAAGACCAGATGCG
195 CTCAGGGAGATAAGACCAGATGCG
* *
9901915 ATCTACTCTACTGTAACCTCAGAGAGATAAGGTCCTAAATTTTAATCTGCTCCACTGTAACTTCA
1 ATCTACTCTACTGTAACCTCAGAGAGATAAGATCCTAAATTTTAATCCGCTCCACTGTAACTTCA
9901980 GGGAGATAGGATAGTGTCTTGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTC
66 GGGAGATAGGATAGTGTCTTGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTC
* * *
9902045 AATCTGCTCCAACGTAATCTCGGGGAGATAAGATCTAAAATTCTTCGGTCTACTCCACTATAACC
131 AATCTGCTCCAACGTAATCTCGAGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACC
9902110 TCAGGGAGATAAGACCAGATGCG
196 TCAGGGAGATAAGACCAGATGCG
*
9902133 ATCTACTCTACTGTAACCTCAGAGAGATAAGATCCTAAGTTTTAATCCGCTCCACTGTAACTTCA
1 ATCTACTCTACTGTAACCTCAGAGAGATAAGATCCTAAATTTTAATCCGCTCCACTGTAACTTCA
9902198 GGGAGATAGGATAGTGTCTTGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTC
66 GGGAGATAGGATAGTGTCTTGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTC
* * * *
9902263 AATCTGCTCCAACGTAATCTCGAGGATATAAGATCTGAAATTGTTTGGTCTACTCCAATGTAACC
131 AATCTGCTCCAACGTAATCTCGAGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACC
*
9902328 TCAGGGAGATAAGACCTGATGCG
196 TCAGGGAGATAAGACCAGATGCG
* *
9902351 ATCTACTCTACTGTAACCTCAGAGAGATAAGATCCTATATTTTAATCCGCTACACTGTAACTTCA
1 ATCTACTCTACTGTAACCTCAGAGAGATAAGATCCTAAATTTTAATCCGCTCCACTGTAACTTCA
*
9902416 GGGAGATAGGATAGTGTCTTGGATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTC
66 GGGAGATAGGATAGTGTCTTGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTC
* ** *
9902481 AATCTGCTCC-ACTGTAACCTTAAGGAGATAAGATCTGAAATTCTTCGGTCTACTCTACTGTAAC
131 AATCTGCTCCAAC-GTAATCTCGAGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAAC
9902545 CTCAGGGAGATAAGACCAGATGCG
195 CTCAGGGAGATAAGACCAGATGCG
9902569 ATCTACTCTACTGTAACCTCAGAGAGATAAGATCCTAAACTTTT-ATCCGCTCCA
1 ATCTACTCTACTGTAACCTCAGAGAGATAAGATCCTAAA-TTTTAATCCGCTCCA
9902623 TGGTTATTTG
Statistics
Matches: 659, Mismatches: 46, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
217 2 0.00
218 650 0.99
219 7 0.01
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (218 bp):
ATCTACTCTACTGTAACCTCAGAGAGATAAGATCCTAAATTTTAATCCGCTCCACTGTAACTTCA
GGGAGATAGGATAGTGTCTTGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTC
AATCTGCTCCAACGTAATCTCGAGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACC
TCAGGGAGATAAGACCAGATGCG
Found at i:9901987 original size:44 final size:44
Alignment explanation
Indices: 9901879--9902622 Score: 197
Period size: 44 Copynumber: 17.1 Consensus size: 44
9901869 CTTCGGTCTA
* * *** *
9901879 CTCCACTGTAACCTCAGGGAGATAAGA-CC-AGA-TGCGATCTA
1 CTCCACTGTAACTTCAGGGAGATAAGATCCTAAATTTTAATCTG
* * * *
9901920 CTCTACTGTAACCTCAGAGAGATAAGGTCCTAAATTTTAATCTG
1 CTCCACTGTAACTTCAGGGAGATAAGATCCTAAATTTTAATCTG
* ** * **
9901964 CTCCACTGTAACTTCAGGGAGATAGGATAGT--GTCTTGGATCTG
1 CTCCACTGTAACTTCAGGGAGATAAGATCCTAAAT-TTTAATCTG
* *** *
9902007 CTCCGCTGTAA-TCTCAGGGAGATAAGATCTCT-GGCTTCAATCTG
1 CTCCACTGTAACT-TCAGGGAGATAAGATC-CTAAATTTTAATCTG
* ** *
9902051 CTCCAAC-GTAA-TCTCGGGGAGATAAGAT-CTAAAATTCTTCGGTCTA
1 CTCC-ACTGTAACT-TCAGGGAGATAAGATCCT-AAATT-TT-AATCTG
* * * *** *
9902097 CTCCACTATAACCTCAGGGAGATAAGA-CC-AGA-TGCGATCTA
1 CTCCACTGTAACTTCAGGGAGATAAGATCCTAAATTTTAATCTG
* * * * *
9902138 CTCTACTGTAACCTCAGAGAGATAAGATCCTAAGTTTTAATCCG
1 CTCCACTGTAACTTCAGGGAGATAAGATCCTAAATTTTAATCTG
* ** * **
9902182 CTCCACTGTAACTTCAGGGAGATAGGATAGT--GTCTTGGATCTG
1 CTCCACTGTAACTTCAGGGAGATAAGATCCTAAAT-TTTAATCTG
* *** *
9902225 CTCCGCTGTAA-TCTCAGGGAGATAAGATCTCT-GGCTTCAATCTG
1 CTCCACTGTAACT-TCAGGGAGATAAGATC-CTAAATTTTAATCTG
* ** *
9902269 CTCCAAC-GTAA-TCTC-GAGGATATAAGAT-CTGAAATTGTTTGGTCTA
1 CTCC-ACTGTAACT-TCAG-GGAGATAAGATCCT-AAA-T-TTTAATCTG
* * * *** *
9902315 CTCCAATGTAACCTCAGGGAGATAAGA-CCT-GA-TGCGATCTA
1 CTCCACTGTAACTTCAGGGAGATAAGATCCTAAATTTTAATCTG
* * * * *
9902356 CTCTACTGTAACCTCAGAGAGATAAGATCCTATATTTTAATCCG
1 CTCCACTGTAACTTCAGGGAGATAAGATCCTAAATTTTAATCTG
* * ** * ** *
9902400 CTACACTGTAACTTCAGGGAGATAGGATAGT--GTCTTGGATCTA
1 CTCCACTGTAACTTCAGGGAGATAAGATCCTAAAT-TTTAATCTG
* *** *
9902443 CTCCGCTGTAA-TCTCAGGGAGATAAGATCTCT-GGCTTCAATCTG
1 CTCCACTGTAACT-TCAGGGAGATAAGATC-CTAAATTTTAATCTG
* ** *
9902487 CTCCACTGTAACCTT-AAGGAGATAAGAT-CTGAAATTCTTCGGTCTA
1 CTCCACTGTAA-CTTCAGGGAGATAAGATCCT-AAATT-TT-AATCTG
* * * *** *
9902533 CTCTACTGTAACCTCAGGGAGATAAGA-CC-AGA-TGCGATCTA
1 CTCCACTGTAACTTCAGGGAGATAAGATCCTAAATTTTAATCTG
* * * *
9902574 CTCTACTGTAACCTCAGAGAGATAAGATCCTAAACTTTT-ATCCG
1 CTCCACTGTAACTTCAGGGAGATAAGATCCTAAA-TTTTAATCTG
9902618 CTCCA
1 CTCCA
9902623 TGGTTATTTG
Statistics
Matches: 516, Mismatches: 136, Indels: 99
0.69 0.18 0.13
Matches are distributed among these distances:
41 114 0.22
42 22 0.04
43 98 0.19
44 191 0.37
45 14 0.03
46 76 0.15
47 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (44 bp):
CTCCACTGTAACTTCAGGGAGATAAGATCCTAAATTTTAATCTG
Found at i:9902049 original size:87 final size:87
Alignment explanation
Indices: 9901879--9902559 Score: 305
Period size: 87 Copynumber: 7.8 Consensus size: 87
9901869 CTTCGGTCTA
* * * * * * *
9901879 CTCCACTGTAACCTCAGGGAGATAAGA-CCAG--ATGCGATCTACTCTACTGTAACCTCAGAGAG
1 CTCCACTGTAACTTCAGGGAGATAAGATACTGTCTTG-GATCTACTCCACTGTAATCTCAGGGAG
* *** *
9901941 ATAAGGTC-CTAAATTTTAATCTG
65 ATAAGATCTCT-GGCTTCAATCTG
* * * *
9901964 CTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTGGATCTGCTCCGCTGTAATCTCAGGGAGA
1 CTCCACTGTAACTTCAGGGAGATAAGATACTGTCTTGGATCTACTCCACTGTAATCTCAGGGAGA
9902029 TAAGATCTCTGGCTTCAATCTG
66 TAAGATCTCTGGCTTCAATCTG
* * * *
9902051 CTCCAAC-GTAA-TCTCGGGGAGATAAGAT-CTAAAATTCTTCGG-TCTACTCCACTATAACCTC
1 CTCC-ACTGTAACT-TCAGGGAGATAAGATACT----GTCTT-GGATCTACTCCACTGTAATCTC
* * * * *
9902112 AGGGAGATAAGA-C-C-AGATGCGATCTA
59 AGGGAGATAAGATCTCTGGCTTCAATCTG
* * * * ** **
9902138 CTCTACTGTAACCTCAGAGAGATAAGATCCTAAGT-TTTAATCCGCTCCACTGTAA-CTTCAGGG
1 CTCCACTGTAACTTCAGGGAGATAAGATACT--GTCTTGGATCTACTCCACTGTAATC-TCAGGG
* ** * **
9902201 AGATAGGAT-AGTGTCTTGGATCTG
63 AGATAAGATCTCTGGCTTCAATCTG
* * * ** *
9902225 CTCCGCTGTAA-TCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCAAC-GTAATCTC-GAG
1 CTCCACTGTAACT-TCAGGGAGATAAGAT-ACTGTCTTGGATCTACTCC-ACTGTAATCTCAG-G
* * * *** *
9902287 GATATAAGATCTGAAATTG-TTTGGTCTA
62 GAGATAAGATCT---CTGGCTTCAATCTG
* * * * * * *
9902315 CTCCAATGTAACCTCAGGGAGATAAGA-CCTG--ATGCGATCTACTCTACTGTAACCTCAGAGAG
1 CTCCACTGTAACTTCAGGGAGATAAGATACTGTCTTG-GATCTACTCCACTGTAATCTCAGGGAG
*** * *
9902377 ATAAGATC-CTATATTTTAATCCG
65 ATAAGATCTCT-GGCTTCAATCTG
* * * *
9902400 CTACACTGTAACTTCAGGGAGATAGGATAGTGTCTTGGATCTACTCCGCTGTAATCTCAGGGAGA
1 CTCCACTGTAACTTCAGGGAGATAAGATACTGTCTTGGATCTACTCCACTGTAATCTCAGGGAGA
9902465 TAAGATCTCTGGCTTCAATCTG
66 TAAGATCTCTGGCTTCAATCTG
* * *
9902487 CTCCACTGTAACCTT-AAGGAGATAAGAT-CTGAAATTCTTCGG-TCTACTCTACTGTAACCTCA
1 CTCCACTGTAA-CTTCAGGGAGATAAGATACTG----TCTT-GGATCTACTCCACTGTAATCTCA
9902549 GGGAGATAAGA
60 GGGAGATAAGA
9902560 CCAGATGCGA
Statistics
Matches: 446, Mismatches: 105, Indels: 85
0.70 0.17 0.13
Matches are distributed among these distances:
83 1 0.00
84 2 0.00
85 80 0.18
86 17 0.04
87 223 0.50
88 25 0.06
89 1 0.00
90 92 0.21
91 5 0.01
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (87 bp):
CTCCACTGTAACTTCAGGGAGATAAGATACTGTCTTGGATCTACTCCACTGTAATCTCAGGGAGA
TAAGATCTCTGGCTTCAATCTG
Found at i:9902647 original size:31 final size:31
Alignment explanation
Indices: 9902609--9902672 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
9902599 GATCCTAAAC
9902609 TTTTATCCGCTCCATGGTTATTTGCATACAG
1 TTTTATCCGCTCCATGGTTATTTGCATACAG
9902640 TTTTATCCGCTCCATGGTTATTTGCATACAG
1 TTTTATCCGCTCCATGGTTATTTGCATACAG
9902671 TT
1 TT
9902673 ATTTGCATCA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.19, C:0.22, G:0.16, T:0.44
Consensus pattern (31 bp):
TTTTATCCGCTCCATGGTTATTTGCATACAG
Found at i:9906315 original size:911 final size:915
Alignment explanation
Indices: 9904932--9906778 Score: 2570
Period size: 911 Copynumber: 2.0 Consensus size: 915
9904922 CAGATAGTAA
* * * * *
9904932 ATTATTAGGTCAATTAAACATTTTTTTTAGTTTTATTAAACACTTATTGATGATTCTATCTTTCT
1 ATTATTAGGTAAATTAAACAGTTTTTTTAATTTTATTAAACACTTATAGATGATTCTACCTTTCT
* * *
9904997 TTATTCAAATTTTTTATTTTGTATTTTTGAAAGATTTTTCTATCATTTTGATTGATGTTGAATTA
66 TTATTCAAATTTTTTATTTTGTAATTTTCAAAGATTTTTCTATCATTTTGATTGATGCTGAATTA
*
9905062 GGGAAAAAAGAATTTAAAAATTTATAGATAACCAGAACGATGGATAAACAAAACTAAAGAAACTC
131 GGAAAAAAAGAATTTAAAAATTTATAGATAACCAGAACGATGGATAAACAAAACTAAAGAAACTC
* *
9905127 TTTTTTAGATGGCCAATATTTGGTGAAAATGGTGAAAACGTGAGTGATGATATCCAACAAAATAA
196 TTTTTTAGATGGCCAATATTAGGTGAAAATGGTGAAAACATGAGTGATGATATCCAACAAAATAA
* * *
9905192 TATTTTGGAAGTGTTCAACAATGGTTATTTTGAGAATATTCAAAATATAGTTGTAGTAGGGGATG
261 TATTTTGGAAGTGTTCAACAATGGCTATTTTGAGAATATTCAAAATATAATTGTAGCAGGGGATG
*
9905257 AAGTGTAAGTGTTTCTTAATTATTCATAGTTTTCCCTAGGGATTTTTCTTTCAAAAATGGATTTG
326 AAGTGTAAGTGTTTCTTAATTATTCATAATTTTCCCTAGGGATTTTTCTTTCAAAAATGGATTTG
*
9905322 GCAAGAGTTTAATTTTTTTCTTCTTCTTTTCTTTTGGCAATTAGTCGTATCGTGGGATTACAAGA
391 GCAAGAGTTTAATTTTTTTCTTCTTCTTTTCTTTTGGCAATTAGTCCTATCGTGGGATTACAAGA
9905387 AGCTCCTGGGCATGAAATTGAGGTTAATTATAACCAGTTTGGGGCAAATCCTCCTCCTGAAATGA
456 AGCTCCTGGGCATGAAATTGAGGTTAATTATAACCAGTTTGGGGCAAATCCTCCTCCTGAAATGA
* * * * *
9905452 ATCCAGTGGTAAATTTTCATTTTCTTTGTTTTGTTCATTTTTTTTATACTTTGTTAG-AA-GT-T
521 ATCCAGTGGTAAATTTTCATTTT-TTTATTTTGTTCAGTGTTTTGATACTTGGTTAGAAATGTAT
* * *
9905514 TAGTC-C-G-A-T-CTAATTTGTTAAACATAAAATATTTCTAGTCACTCCTAAAGCAAATCTATG
585 TACTCTCAGTACTACTAATTTGCTAAACATAAAATATTTCTAGTCACTCCTAAAACAAATCTATG
* *
9905574 ATGCTAAGGTTCATGTTAATCACATTTTTT-C-AG-G-A-AAAA-AAACCCAGATTTCTTTAGAG
650 AAGCTAAGGTTCATGTTAATCACATTTTTTACAAGAGAAGAAAAGAAACCCAAATTTCTTTAGAG
* *
9905633 TAGCAAAAACAAAAAAAAACCC-AGAATTTAAAGTCTATTTGAAGATGGCCACTATCATTTTGAA
715 T-------AC--AAAAAAACCCTAGAATTTAAAGTCTATTTGAAGATGACCAATATCATTTTGAA
* * *
9905697 AAGAAAATCAAACCTGTTTATTTCAATACAAATGAAAACAGAATTAAAAGACCCTACTTTTTGAA
771 AAGAAAATCAAACCTGTTTATTTAAATACAAATGAAAACAGAATGAAAAGACCCTACATTTTGAA
* * *
9905762 GTTTATTTGATGATGACTAAAATAATTATAATTTTGAAAAGAAAATCAAAAAGTTGAAGCCTAAT
836 GTTTATTTGATGATGACCAAAATAATTATAATTTTGAAAAGAAAATCAAAAAGCTGAAGCCTAAA
9905827 TATTTCAATAGATAG
901 TATTTCAATAGATAG
* *
9905842 ATTATTAGGTAAATTAAACTAGTTTTTTTAATTTTATTAAACATTTATAGATGATTCTACCTTTT
1 ATTATTAGGTAAATTAAAC-AGTTTTTTTAATTTTATTAAACACTTATAGATGATTCTACCTTTC
* * * * *
9905907 TTTCTTCAAATTTTTTATTTTTTAATTTTCCAAGGTTTTTCTATCATTTTGATTGATGCTG-GTT
65 TTTATTCAAATTTTTTATTTTGTAATTTTCAAAGATTTTTCTATCATTTTGATTGATGCTGAATT
* * * * *
9905971 CAGGAAAAAAATAATTTAAAATTTTATAGATAGA-TA-AACTTATAGG-TAAACTAAACTAACA-
130 -AGGAAAAAAAGAATTTAAAAATTTATAGATA-ACCAGAAC-GAT-GGATAAACAAAACTAA-AG
* * *
9906032 AATCTTTTTTTTTAGATGGCCAATA-TAGGTGGAAATGGTGAAAACATGAGTGATGATATCCAAC
190 AAAC-TCTTTTTTAGATGGCCAATATTAGGTGAAAATGGTGAAAACATGAGTGATGATATCCAAC
9906096 AAAATAATATTTTGGAAGTGTTCAACAATGGCTATTTTGAGAATATTCAAAATATAATTGTAGCA
254 AAAATAATATTTTGGAAGTGTTCAACAATGGCTATTTTGAGAATATTCAAAATATAATTGTAGCA
* *
9906161 GGGGATGAAGTGTAAGTGTTTTTTTAATTATTCTTAATTTTCCCTAGGGATTTTTCTTTCAAAAA
319 GGGGATGAAGTGTAAGTG-TTTCTTAATTATTCATAATTTTCCCTAGGGATTTTTCTTTCAAAAA
*
9906226 TGGATTTGGCAAGCA-TTTAA-TTTTTTCTTCTTCTTTTCTTTTGGCAATTAGTCCTATGGTGGG
383 TGGATTTGGCAAG-AGTTTAATTTTTTTCTTCTTCTTTTCTTTTGGCAATTAGTCCTATCGTGGG
* * *
9906289 ATTAGAAGAAGCTCCTGGGTATGAAATTGAGGTTAATTATAACCATTTTGGGGCAAATCCTCCTC
447 ATTACAAGAAGCTCCTGGGCATGAAATTGAGGTTAATTATAACCAGTTTGGGGCAAATCCTCCTC
*
9906354 CTGAAATGAATCCAGTGGTAATTTTTCATTTTTTTATTTTGTTCAGTGTTTTGATACTTGGTTAG
512 CTGAAATGAATCCAGTGGTAAATTTTCATTTTTTTATTTTGTTCAGTGTTTTGATACTTGGTTAG
9906419 AAAATGTATTACTCTCTATAAGTTTTATCTGACCTAATTTGCTAAACATAAAATATTTCTAGTCA
577 -AAATGTATTACTCTC----AG---TA-CT-A-CTAATTTGCTAAACATAAAATATTTCTAGTCA
* *
9906484 TTCCTAAAACAAATCTATGAAGCTAAGGTTCATGTTAATCACTTTTTTTAACAAAAAAAAAAGAA
631 CTCCTAAAACAAATCTATGAAGCTAAGGTTCATGTTAATCACATTTTTT-AC--------AAG--
*
9906549 AGAAAGAAAAGGAAACCCAAATTTCTTTAGAGTACAAAAAAGCCCTAGAATTTAAAGTCTATTTG
685 AG-AAGAAAA-GAAACCCAAATTTCTTTAGAGTACAAAAAAACCCTAGAATTTAAAGTCTATTTG
* **
9906614 ATGATGACCAATATCATTTTGAAAAGAAAATCAAACCTGTTTATTTAAATACAAATGAAAGTAGA
748 AAGATGACCAATATCATTTTGAAAAGAAAATCAAACCTGTTTATTTAAATACAAATGAAAACAGA
*
9906679 ATGAAAAGACCCTACATTTTGAAGTTTATTTGATGATGACCAAAATAATTATCATTTTGAAAAGA
813 ATGAAAAGACCCTACATTTTGAAGTTTATTTGATGATGACCAAAATAATTATAATTTTGAAAAGA
*
9906744 AAATCAGAAAGCTGAAGCCTAAATATTTCAATAGA
878 AAATCAAAAAGCTGAAGCCTAAATATTTCAATAGA
9906779 AATGAAAATA
Statistics
Matches: 825, Mismatches: 64, Indels: 66
0.86 0.07 0.07
Matches are distributed among these distances:
910 51 0.06
911 389 0.47
912 86 0.10
913 3 0.00
914 5 0.01
915 1 0.00
920 1 0.00
924 1 0.00
926 1 0.00
929 76 0.09
931 1 0.00
939 9 0.01
940 173 0.21
941 2 0.00
943 1 0.00
945 1 0.00
946 4 0.00
948 20 0.02
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.38
Consensus pattern (915 bp):
ATTATTAGGTAAATTAAACAGTTTTTTTAATTTTATTAAACACTTATAGATGATTCTACCTTTCT
TTATTCAAATTTTTTATTTTGTAATTTTCAAAGATTTTTCTATCATTTTGATTGATGCTGAATTA
GGAAAAAAAGAATTTAAAAATTTATAGATAACCAGAACGATGGATAAACAAAACTAAAGAAACTC
TTTTTTAGATGGCCAATATTAGGTGAAAATGGTGAAAACATGAGTGATGATATCCAACAAAATAA
TATTTTGGAAGTGTTCAACAATGGCTATTTTGAGAATATTCAAAATATAATTGTAGCAGGGGATG
AAGTGTAAGTGTTTCTTAATTATTCATAATTTTCCCTAGGGATTTTTCTTTCAAAAATGGATTTG
GCAAGAGTTTAATTTTTTTCTTCTTCTTTTCTTTTGGCAATTAGTCCTATCGTGGGATTACAAGA
AGCTCCTGGGCATGAAATTGAGGTTAATTATAACCAGTTTGGGGCAAATCCTCCTCCTGAAATGA
ATCCAGTGGTAAATTTTCATTTTTTTATTTTGTTCAGTGTTTTGATACTTGGTTAGAAATGTATT
ACTCTCAGTACTACTAATTTGCTAAACATAAAATATTTCTAGTCACTCCTAAAACAAATCTATGA
AGCTAAGGTTCATGTTAATCACATTTTTTACAAGAGAAGAAAAGAAACCCAAATTTCTTTAGAGT
ACAAAAAAACCCTAGAATTTAAAGTCTATTTGAAGATGACCAATATCATTTTGAAAAGAAAATCA
AACCTGTTTATTTAAATACAAATGAAAACAGAATGAAAAGACCCTACATTTTGAAGTTTATTTGA
TGATGACCAAAATAATTATAATTTTGAAAAGAAAATCAAAAAGCTGAAGCCTAAATATTTCAATA
GATAG
Found at i:9906843 original size:18 final size:17
Alignment explanation
Indices: 9906820--9906853 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
9906810 TTGAATTCCA
9906820 TTTGAAAAGAAACATCAC
1 TTTGAAAAGAAA-ATCAC
*
9906838 TTTGAATAGAAAATCA
1 TTTGAAAAGAAAATCA
9906854 TGAAGTTGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.50, C:0.12, G:0.12, T:0.26
Consensus pattern (17 bp):
TTTGAAAAGAAAATCAC
Found at i:9910935 original size:20 final size:20
Alignment explanation
Indices: 9910912--9910964 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 20
9910902 GAGGGAATAG
9910912 AAAAAATCATGAGGAAGTAC
1 AAAAAATCATGAGGAAGTAC
*
9910932 AAAAAATTTC-T-AGGGAGTAC
1 AAAAAA--TCATGAGGAAGTAC
*
9910952 AGAAAATCATGAG
1 AAAAAATCATGAG
9910965 ATAATATCGA
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
18 2 0.07
19 1 0.04
20 21 0.78
21 1 0.04
22 2 0.07
ACGTcount: A:0.51, C:0.09, G:0.21, T:0.19
Consensus pattern (20 bp):
AAAAAATCATGAGGAAGTAC
Found at i:9913258 original size:20 final size:20
Alignment explanation
Indices: 9913227--9913264 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
9913217 ACTCTCTAAG
9913227 AAAATAATGAAATGAAATACA
1 AAAATAATGAAAT-AAATACA
9913248 AAAATAA-GAAATAAATA
1 AAAATAATGAAATAAATA
9913265 TATTGAAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 5 0.29
20 5 0.29
21 7 0.41
ACGTcount: A:0.71, C:0.03, G:0.08, T:0.18
Consensus pattern (20 bp):
AAAATAATGAAATAAATACA
Found at i:9917415 original size:18 final size:17
Alignment explanation
Indices: 9917394--9917427 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
9917384 TTGAATTCCA
9917394 TTTGAAAAGAAACATCAC
1 TTTGAAAAGAAA-ATCAC
*
9917412 TTTGAATAGAAAATCA
1 TTTGAAAAGAAAATCA
9917428 TGAAGTTGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.50, C:0.12, G:0.12, T:0.26
Consensus pattern (17 bp):
TTTGAAAAGAAAATCAC
Done.