Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62811768
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 736185 characters in sequence are not A, C, G, or T
File 39 of 211
Found at i:10298346 original size:9 final size:9
Alignment explanation
Indices: 10298328--10298364 Score: 58
Period size: 9 Copynumber: 4.2 Consensus size: 9
10298318 ATTCTCAAAT
10298328 AATA-TCAA
1 AATATTCAA
10298336 AATATTCAA
1 AATATTCAA
10298345 AATATTCAA
1 AATATTCAA
*
10298354 AATATTTAA
1 AATATTCAA
10298363 AA
1 AA
10298365 ATTTCTATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
8 4 0.15
9 23 0.85
ACGTcount: A:0.59, C:0.08, G:0.00, T:0.32
Consensus pattern (9 bp):
AATATTCAA
Found at i:10298395 original size:25 final size:24
Alignment explanation
Indices: 10298367--10298488 Score: 128
Period size: 25 Copynumber: 5.1 Consensus size: 24
10298357 ATTTAAAAAT
10298367 TTCTATTTTATTACATCAAATAAA
1 TTCTATTTTATTACATCAAATAAA
10298391 CTTCTATTTTATTACATCAAAT-AA
1 -TTCTATTTTATTACATCAAATAAA
* ** *
10298415 TATCAAAATAATTA-A--AAA-AAA
1 T-TCTATTTTATTACATCAAATAAA
*
10298436 TTCTATTTTATTATATCAAATAAA
1 TTCTATTTTATTACATCAAATAAA
10298460 CTTCTATTTTATTACATCAAATAATA
1 -TTCTATTTTATTACATCAAATAA-A
10298486 TTC
1 TTC
10298489 AAAATATTTG
Statistics
Matches: 80, Mismatches: 9, Indels: 16
0.76 0.09 0.15
Matches are distributed among these distances:
20 8 0.10
21 7 0.09
23 5 0.06
24 13 0.16
25 46 0.57
26 1 0.01
ACGTcount: A:0.44, C:0.12, G:0.00, T:0.43
Consensus pattern (24 bp):
TTCTATTTTATTACATCAAATAAA
Found at i:10298445 original size:69 final size:69
Alignment explanation
Indices: 10298345--10298494 Score: 250
Period size: 69 Copynumber: 2.2 Consensus size: 69
10298335 AAATATTCAA
* *
10298345 AATATTCAAAAT-ATTTAAAAATTTCTATTTTATTACATCAAATAAACTTCTATTTTATTACATC
1 AATATTCAAAATAATTAAAAAAATTCTATTTTATTACATCAAATAAACTTCTATTTTATTACATC
10298409 AAAT
66 AAAT
*
10298413 AATA-TCAAAATAATTAAAAAAAATTCTATTTTATTATATCAAATAAACTTCTATTTTATTACAT
1 AATATTCAAAATAATT-AAAAAAATTCTATTTTATTACATCAAATAAACTTCTATTTTATTACAT
10298477 CAAAT
65 CAAAT
10298482 AATATTCAAAATA
1 AATATTCAAAATA
10298495 TTTGTACAAA
Statistics
Matches: 76, Mismatches: 3, Indels: 4
0.92 0.04 0.05
Matches are distributed among these distances:
67 7 0.09
68 7 0.09
69 54 0.71
70 8 0.11
ACGTcount: A:0.48, C:0.11, G:0.00, T:0.41
Consensus pattern (69 bp):
AATATTCAAAATAATTAAAAAAATTCTATTTTATTACATCAAATAAACTTCTATTTTATTACATC
AAAT
Found at i:10298928 original size:17 final size:18
Alignment explanation
Indices: 10298906--10298942 Score: 67
Period size: 17 Copynumber: 2.1 Consensus size: 18
10298896 CTCGGAGAAT
10298906 GATACATATAA-GGCTAG
1 GATACATATAAGGGCTAG
10298923 GATACATATAAGGGCTAG
1 GATACATATAAGGGCTAG
10298941 GA
1 GA
10298943 AACGCACCTG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.41, C:0.11, G:0.27, T:0.22
Consensus pattern (18 bp):
GATACATATAAGGGCTAG
Found at i:10299603 original size:7 final size:7
Alignment explanation
Indices: 10299593--10299617 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
10299583 TTATATACAT
10299593 AATACTA
1 AATACTA
10299600 AATACTA
1 AATACTA
10299607 AATACTA
1 AATACTA
10299614 AATA
1 AATA
10299618 TCAATCGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:10300866 original size:51 final size:53
Alignment explanation
Indices: 10300757--10300882 Score: 184
Period size: 51 Copynumber: 2.4 Consensus size: 53
10300747 TATTTTAAAA
* * *
10300757 AAGGAAATTGAGAGAAAATTGAAATTAATTGTTAGTATTTGAGAGAATTTTGG
1 AAGGAAATTGAGAGAAAATTGAAATTAAATGATAGGATTTGAGAGAATTTTGG
* *
10300810 AAGGAAAATGACAGAAAATTGAAATTAAAT-AT-GGATTTGAGAGAATTTTGG
1 AAGGAAATTGAGAGAAAATTGAAATTAAATGATAGGATTTGAGAGAATTTTGG
*
10300861 AAGGAAATTGAGAGGAAATTGA
1 AAGGAAATTGAGAGAAAATTGA
10300883 GTGGAAATAT
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
51 37 0.57
52 1 0.02
53 27 0.42
ACGTcount: A:0.45, C:0.01, G:0.25, T:0.29
Consensus pattern (53 bp):
AAGGAAATTGAGAGAAAATTGAAATTAAATGATAGGATTTGAGAGAATTTTGG
Found at i:10300876 original size:11 final size:11
Alignment explanation
Indices: 10300862--10300897 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
10300852 GAATTTTGGA
10300862 AGGAAATTGAG
1 AGGAAATTGAG
10300873 AGGAAATTGAG
1 AGGAAATTGAG
*
10300884 TGGAAATATGAG
1 AGGAAAT-TGAG
10300896 AG
1 AG
10300898 AGGATTAGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 17 0.77
12 5 0.23
ACGTcount: A:0.44, C:0.00, G:0.36, T:0.19
Consensus pattern (11 bp):
AGGAAATTGAG
Found at i:10301359 original size:17 final size:17
Alignment explanation
Indices: 10301326--10301366 Score: 66
Period size: 17 Copynumber: 2.4 Consensus size: 17
10301316 TATTTCTAAG
10301326 AAATATTTTTGAGATAA
1 AAATATTTTTGAGATAA
10301343 AAAGTATTTTTGA-ATAA
1 AAA-TATTTTTGAGATAA
10301360 AAATATT
1 AAATATT
10301367 CTTAAATAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.17
17 10 0.43
18 9 0.39
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (17 bp):
AAATATTTTTGAGATAA
Found at i:10306318 original size:23 final size:25
Alignment explanation
Indices: 10306284--10306344 Score: 74
Period size: 24 Copynumber: 2.5 Consensus size: 25
10306274 ATCCTTCTGA
*
10306284 GATTTCCTTTCCTTTTTC-TCTTCC-
1 GATTT-CTTTCCTTTTTCTTCTCCCT
*
10306308 GATTTCTTTCCCTTTTCTTCTCCCT
1 GATTTCTTTCCTTTTTCTTCTCCCT
10306333 GA-TTCTTTCCTT
1 GATTTCTTTCCTT
10306345 GCTCGGCAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
23 11 0.34
24 19 0.59
25 2 0.06
ACGTcount: A:0.05, C:0.33, G:0.05, T:0.57
Consensus pattern (25 bp):
GATTTCTTTCCTTTTTCTTCTCCCT
Found at i:10308745 original size:27 final size:27
Alignment explanation
Indices: 10308713--10308773 Score: 122
Period size: 27 Copynumber: 2.3 Consensus size: 27
10308703 TAATGTAACC
10308713 TAATATTAATTAAACATTAGTGTTGAG
1 TAATATTAATTAAACATTAGTGTTGAG
10308740 TAATATTAATTAAACATTAGTGTTGAG
1 TAATATTAATTAAACATTAGTGTTGAG
10308767 TAATATT
1 TAATATT
10308774 CTCTTGTGTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.41, C:0.03, G:0.13, T:0.43
Consensus pattern (27 bp):
TAATATTAATTAAACATTAGTGTTGAG
Found at i:10314049 original size:10 final size:10
Alignment explanation
Indices: 10314034--10314063 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
10314024 ATAAATGCCC
10314034 AAGAAAAACA
1 AAGAAAAACA
10314044 AAGAAAAACA
1 AAGAAAAACA
*
10314054 AACAAAAACA
1 AAGAAAAACA
10314064 CAACATTGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.80, C:0.13, G:0.07, T:0.00
Consensus pattern (10 bp):
AAGAAAAACA
Found at i:10314832 original size:19 final size:21
Alignment explanation
Indices: 10314797--10314848 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
10314787 ATAAAATTTA
*
10314797 ATTAGAATATATAAAATAT-GTT
1 ATTA-AATAT-TAAAATATAATT
10314819 -TTAAATATTAAAATATAATT
1 ATTAAATATTAAAATATAATT
10314839 ATTAAATATT
1 ATTAAATATT
10314849 TGTAATTAGA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 8 0.30
20 7 0.26
21 12 0.44
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.44
Consensus pattern (21 bp):
ATTAAATATTAAAATATAATT
Found at i:10314891 original size:17 final size:18
Alignment explanation
Indices: 10314869--10314904 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
10314859 TCTTAATATA
10314869 TTTTTA-TTATTTTAAAT
1 TTTTTATTTATTTTAAAT
*
10314886 TTTTTATTTATTTTTAAT
1 TTTTTATTTATTTTAAAT
10314904 T
1 T
10314905 AATAATTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (18 bp):
TTTTTATTTATTTTAAAT
Found at i:10315038 original size:36 final size:36
Alignment explanation
Indices: 10314998--10315069 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
10314988 AAAAAATTTA
*
10314998 CCTCCAAGCGGTACTAAGCAAGCTGTTAGATTTGAT
1 CCTCCAAGCAGTACTAAGCAAGCTGTTAGATTTGAT
10315034 CCTCCAAGCAGTACTAAGCAAGCTGTTAGATTTGAT
1 CCTCCAAGCAGTACTAAGCAAGCTGTTAGATTTGAT
10315070 TCTACATATA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (36 bp):
CCTCCAAGCAGTACTAAGCAAGCTGTTAGATTTGAT
Found at i:10316249 original size:31 final size:33
Alignment explanation
Indices: 10316214--10316282 Score: 88
Period size: 31 Copynumber: 2.2 Consensus size: 33
10316204 ATTCAAAACA
*
10316214 TAATAGAGATAGCTAAG-CCAATTCAAAGTAC-
1 TAATAGAGATAGCTAAGTCCAATTCAAAATACT
* * *
10316245 TAATAGATATGGCTAAGTCCAGTTCAAAATACT
1 TAATAGAGATAGCTAAGTCCAATTCAAAATACT
10316278 TAATA
1 TAATA
10316283 AAATAACAGA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
31 15 0.47
32 12 0.38
33 5 0.16
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.28
Consensus pattern (33 bp):
TAATAGAGATAGCTAAGTCCAATTCAAAATACT
Found at i:10322470 original size:22 final size:22
Alignment explanation
Indices: 10322434--10322477 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
10322424 GTTTAAAATT
* *
10322434 TTTTATAAAATAATATTATTTA
1 TTTTATAAAACAATAATATTTA
*
10322456 TTTTATAAAGCAATAATATTTA
1 TTTTATAAAACAATAATATTTA
10322478 ATCATTATTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.50
Consensus pattern (22 bp):
TTTTATAAAACAATAATATTTA
Found at i:10323776 original size:10 final size:9
Alignment explanation
Indices: 10323755--10323832 Score: 70
Period size: 10 Copynumber: 8.0 Consensus size: 9
10323745 TTTTCTATTT
10323755 TTTTAAT-A
1 TTTTAATAA
10323763 TTTTAATAA
1 TTTTAATAA
10323772 GTTTTAATAA
1 -TTTTAATAA
10323782 TTTCTAATAA
1 TTT-TAATAA
10323792 CTTTTCAATCAA
1 -TTTT-AAT-AA
10323804 TTTTAA-AA
1 TTTTAATAA
10323812 TTATTCAATAA
1 TT-TT-AATAA
10323823 TTGTTAATAA
1 TT-TTAATAA
10323833 CATTTAAATA
Statistics
Matches: 60, Mismatches: 1, Indels: 16
0.78 0.01 0.21
Matches are distributed among these distances:
8 11 0.18
9 6 0.10
10 25 0.42
11 16 0.27
12 2 0.03
ACGTcount: A:0.41, C:0.06, G:0.03, T:0.50
Consensus pattern (9 bp):
TTTTAATAA
Found at i:10346270 original size:24 final size:23
Alignment explanation
Indices: 10346221--10346270 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 23
10346211 TAAAGTTAGT
* *
10346221 TATATATTATTTTTATAATATTA
1 TATATATGATTTTTATAATATCA
10346244 TATATTATGATTTTTATGAAT-TCA
1 TATA-TATGATTTTTAT-AATATCA
10346268 TAT
1 TAT
10346271 TTTAATAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 4 0.17
24 16 0.70
25 3 0.13
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.58
Consensus pattern (23 bp):
TATATATGATTTTTATAATATCA
Found at i:10346310 original size:40 final size:39
Alignment explanation
Indices: 10346228--10346311 Score: 91
Period size: 40 Copynumber: 2.1 Consensus size: 39
10346218 AGTTATATAT
* * *
10346228 TATTTTTATAATATTATATATTATGATTTTTATGAATTCA
1 TATTTTAATAATAATATATATTAAGATTTTTA-GAATTCA
10346268 TATTTTAATAATAAT-TATATTAAGAATTTATTA-AATTACA
1 TATTTTAATAATAATATATATTAAG-ATTT-TTAGAATT-CA
10346308 TATT
1 TATT
10346312 ATTTTATTAA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
39 12 0.32
40 23 0.61
41 3 0.08
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.54
Consensus pattern (39 bp):
TATTTTAATAATAATATATATTAAGATTTTTAGAATTCA
Found at i:10360490 original size:18 final size:18
Alignment explanation
Indices: 10360467--10360555 Score: 106
Period size: 18 Copynumber: 4.9 Consensus size: 18
10360457 CCAACTACTG
*
10360467 TATACGTGAACAGTACCA
1 TATACGTGAATAGTACCA
*
10360485 TATACGTGAATAGTGCCA
1 TATACGTGAATAGTACCA
**
10360503 TATACGTGAATAGTACTG
1 TATACGTGAATAGTACCA
* **
10360521 TATACGTGAATAGTGCTG
1 TATACGTGAATAGTACCA
*
10360539 TATATGTGAATAGTACC
1 TATACGTGAATAGTACC
10360556 GTAAACGGTC
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 62 1.00
ACGTcount: A:0.34, C:0.15, G:0.21, T:0.30
Consensus pattern (18 bp):
TATACGTGAATAGTACCA
Found at i:10360518 original size:36 final size:36
Alignment explanation
Indices: 10360467--10360555 Score: 124
Period size: 36 Copynumber: 2.5 Consensus size: 36
10360457 CCAACTACTG
*
10360467 TATACGTGAACAGTACCATATACGTGAATAGTGCCA
1 TATACGTGAATAGTACCATATACGTGAATAGTGCCA
** **
10360503 TATACGTGAATAGTACTGTATACGTGAATAGTGCTG
1 TATACGTGAATAGTACCATATACGTGAATAGTGCCA
*
10360539 TATATGTGAATAGTACC
1 TATACGTGAATAGTACC
10360556 GTAAACGGTC
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
36 46 1.00
ACGTcount: A:0.34, C:0.15, G:0.21, T:0.30
Consensus pattern (36 bp):
TATACGTGAATAGTACCATATACGTGAATAGTGCCA
Found at i:10361942 original size:20 final size:20
Alignment explanation
Indices: 10361908--10361949 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
10361898 AACTATTTAA
** *
10361908 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
10361928 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
10361948 AT
1 AT
10361950 GTGTTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:10365868 original size:43 final size:43
Alignment explanation
Indices: 10365819--10365930 Score: 131
Period size: 43 Copynumber: 2.6 Consensus size: 43
10365809 TGTTATCGTA
* * *
10365819 TAAGACCACGTCTGGGACGTTGGCATCGACT-TGTGTTTACGTG
1 TAAGACCACGTCTGGGACGTTGGCATCGA-TATGCGATTACATG
* *
10365862 TAAGACC-CTATCTGGGATAG-TGGCATCGATATGCGATTACATG
1 TAAGACCAC-GTCTGGGA-CGTTGGCATCGATATGCGATTACATG
10365905 TAAGACCACGTCTGGGACGTTGGCAT
1 TAAGACCACGTCTGGGACGTTGGCAT
10365931 TGTACAAGTT
Statistics
Matches: 57, Mismatches: 7, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
42 3 0.05
43 52 0.91
44 2 0.04
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.28
Consensus pattern (43 bp):
TAAGACCACGTCTGGGACGTTGGCATCGATATGCGATTACATG
Found at i:10366872 original size:23 final size:23
Alignment explanation
Indices: 10366846--10367012 Score: 163
Period size: 23 Copynumber: 7.1 Consensus size: 23
10366836 TGATGCTTAA
*
10366846 ATGCTGCCCAATTTGTTACATAT
1 ATGCTGCCCAATTTGTTGCATAT
* * * *
10366869 ATGCTGTCCAATTTTGATGCTTAA
1 ATGCTGCCCAA-TTTGTTGCATAT
*
10366893 ATGCTGCCCAATTTGTTACATAT
1 ATGCTGCCCAATTTGTTGCATAT
* * * *
10366916 ATGCTGTCCAATTTTGATGCTTAA
1 ATGCTGCCCAA-TTTGTTGCATAT
10366940 ATGCTGCCCAATTTGTTGCATAT
1 ATGCTGCCCAATTTGTTGCATAT
* * * * *
10366963 ATGCGGTCCAATTTTGATGCTTAA
1 ATGCTGCCCAA-TTTGTTGCATAT
*
10366987 ATGCTGCCCAATTTGTTGTATAT
1 ATGCTGCCCAATTTGTTGCATAT
10367010 ATG
1 ATG
10367013 TTGTCCAGTT
Statistics
Matches: 111, Mismatches: 30, Indels: 6
0.76 0.20 0.04
Matches are distributed among these distances:
23 57 0.51
24 54 0.49
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.40
Consensus pattern (23 bp):
ATGCTGCCCAATTTGTTGCATAT
Found at i:10366887 original size:47 final size:47
Alignment explanation
Indices: 10366832--10367025 Score: 334
Period size: 47 Copynumber: 4.1 Consensus size: 47
10366822 ATATATACAT
10366832 ATTTTGATGCTTAAATGCTGCCCAATTTGTTACATATATGCTGTCCA
1 ATTTTGATGCTTAAATGCTGCCCAATTTGTTACATATATGCTGTCCA
10366879 ATTTTGATGCTTAAATGCTGCCCAATTTGTTACATATATGCTGTCCA
1 ATTTTGATGCTTAAATGCTGCCCAATTTGTTACATATATGCTGTCCA
* *
10366926 ATTTTGATGCTTAAATGCTGCCCAATTTGTTGCATATATGCGGTCCA
1 ATTTTGATGCTTAAATGCTGCCCAATTTGTTACATATATGCTGTCCA
** *
10366973 ATTTTGATGCTTAAATGCTGCCCAATTTGTTGTATATATGTTGTCCA
1 ATTTTGATGCTTAAATGCTGCCCAATTTGTTACATATATGCTGTCCA
*
10367020 GTTTTG
1 ATTTTG
10367026 GTGTAAAAAT
Statistics
Matches: 141, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 141 1.00
ACGTcount: A:0.24, C:0.18, G:0.17, T:0.42
Consensus pattern (47 bp):
ATTTTGATGCTTAAATGCTGCCCAATTTGTTACATATATGCTGTCCA
Found at i:10366896 original size:24 final size:24
Alignment explanation
Indices: 10366832--10367000 Score: 182
Period size: 24 Copynumber: 7.2 Consensus size: 24
10366822 ATATATACAT
10366832 ATTTTGATGCTTAAATGCTGCCCA
1 ATTTTGATGCTTAAATGCTGCCCA
* * * * *
10366856 A-TTTGTTACATATATGCTGTCCA
1 ATTTTGATGCTTAAATGCTGCCCA
10366879 ATTTTGATGCTTAAATGCTGCCCA
1 ATTTTGATGCTTAAATGCTGCCCA
* * * * *
10366903 A-TTTGTTACATATATGCTGTCCA
1 ATTTTGATGCTTAAATGCTGCCCA
10366926 ATTTTGATGCTTAAATGCTGCCCA
1 ATTTTGATGCTTAAATGCTGCCCA
* * * * *
10366950 A-TTTGTTGCATATATGCGGTCCA
1 ATTTTGATGCTTAAATGCTGCCCA
10366973 ATTTTGATGCTTAAATGCTGCCCA
1 ATTTTGATGCTTAAATGCTGCCCA
10366997 ATTT
1 ATTT
10367001 GTTGTATATA
Statistics
Matches: 112, Mismatches: 30, Indels: 6
0.76 0.20 0.04
Matches are distributed among these distances:
23 54 0.48
24 58 0.52
ACGTcount: A:0.25, C:0.19, G:0.16, T:0.40
Consensus pattern (24 bp):
ATTTTGATGCTTAAATGCTGCCCA
Found at i:10367051 original size:94 final size:94
Alignment explanation
Indices: 10366832--10367060 Score: 289
Period size: 94 Copynumber: 2.4 Consensus size: 94
10366822 ATATATACAT
* * ** * *
10366832 ATTTTGATGCTTAAATGCTGCCCAATTTGTTACATATATGCTGTCCAATTTTGATGCTTAAATGC
1 ATTTTGATGCTAAAATACTGCCCAAACTGTTGCATATATGCGGTCCAATTTTGATGCTTAAATGC
10366897 TGCCCAATTTGTTACATATATGCTGTCCA
66 TGCCCAATTTGTTACATATATGCTGTCCA
* * **
10366926 ATTTTGATGCTTAAATGCTGCCCAATTTGTTGCATATATGCGGTCCAATTTTGATGCTTAAATGC
1 ATTTTGATGCTAAAATACTGCCCAAACTGTTGCATATATGCGGTCCAATTTTGATGCTTAAATGC
** *
10366991 TGCCCAATTTGTTGTATATATGTTGTCCA
66 TGCCCAATTTGTTACATATATGCTGTCCA
* * * *
10367020 GTTTTGGTG-TAAAAATACTGCTCAAACTGTTGTATATATGC
1 ATTTTGATGCT-AAAATACTGCCCAAACTGTTGCATATATGC
10367061 TACCCAAATT
Statistics
Matches: 121, Mismatches: 13, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
93 1 0.01
94 120 0.99
ACGTcount: A:0.25, C:0.17, G:0.17, T:0.41
Consensus pattern (94 bp):
ATTTTGATGCTAAAATACTGCCCAAACTGTTGCATATATGCGGTCCAATTTTGATGCTTAAATGC
TGCCCAATTTGTTACATATATGCTGTCCA
Found at i:10367094 original size:141 final size:139
Alignment explanation
Indices: 10366832--10367094 Score: 298
Period size: 141 Copynumber: 1.9 Consensus size: 139
10366822 ATATATACAT
* *
10366832 ATTTTGATGCTTAAATGCTGCCCAATTTGTTACATATATGCTGTCCAATTTTGATGCTTAAATGC
1 ATTTTGATGCTTAAATGCTGCCCAATTTGTTACATATATGCTGTCCAATTTTGATGCTAAAATAC
** ** * *
10366897 TGCCCAATTTGTTACATATATGCTGTCCAATTTTGATGCTTAAATGCTGCCCAATTTGTTGCATA
66 TGCCCAAACTGTTACATATATGCTACCCAATTTTGAT-CTT-AACGCTGCCAAATTTGTTGCATA
10366962 TATGCGGTCCA
129 TATGCGGTCCA
** * * *
10366973 ATTTTGATGCTTAAATGCTGCCCAATTTGTTGTATATATGTTGTCCAGTTTTGGTG-TAAAAATA
1 ATTTTGATGCTTAAATGCTGCCCAATTTGTTACATATATGCTGTCCAATTTTGATGCT-AAAATA
* **
10367037 CTGCTCAAACTGTTGTATATATGCTACCCAAATTGTTGTAT-TT-ACGCTGTCCAAATTT
65 CTGCCCAAACTGTTACATATATGCTACCC-AATT-TTG-ATCTTAACGCTG-CCAAATTT
10367095 TGGTGTGAAA
Statistics
Matches: 101, Mismatches: 16, Indels: 10
0.80 0.13 0.08
Matches are distributed among these distances:
140 6 0.06
141 84 0.83
142 6 0.06
143 3 0.03
144 2 0.02
ACGTcount: A:0.25, C:0.17, G:0.16, T:0.41
Consensus pattern (139 bp):
ATTTTGATGCTTAAATGCTGCCCAATTTGTTACATATATGCTGTCCAATTTTGATGCTAAAATAC
TGCCCAAACTGTTACATATATGCTACCCAATTTTGATCTTAACGCTGCCAAATTTGTTGCATATA
TGCGGTCCA
Found at i:10370388 original size:42 final size:43
Alignment explanation
Indices: 10370329--10370450 Score: 146
Period size: 42 Copynumber: 2.9 Consensus size: 43
10370319 ATTTCTGATA
*
10370329 TGTGTTCTCGTGTAAGACCACGTC-GGGACGTTGGCATCGA-C
1 TGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGATC
10370370 TTGTGTTTTCGTGTAAGACC-CTGTCTGGGACAG-TGGCATCGATC
1 -TGTGTTTTCGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATC
* * *
10370414 TGTG-ATACATGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCAT
10370451 TGTACAAGCT
Statistics
Matches: 70, Mismatches: 4, Indels: 12
0.81 0.05 0.14
Matches are distributed among these distances:
41 2 0.03
42 47 0.67
43 19 0.27
44 2 0.03
ACGTcount: A:0.19, C:0.21, G:0.30, T:0.30
Consensus pattern (43 bp):
TGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGATC
Found at i:10371121 original size:2 final size:2
Alignment explanation
Indices: 10371114--10371147 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
10371104 TGGAATAAGA
*
10371114 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10371148 GCGTGATGTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:10372493 original size:32 final size:32
Alignment explanation
Indices: 10372451--10372511 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
10372441 TTTTTTGAAA
10372451 AATAATTATAACTATTTAAAT-AAT-ATTATTTG
1 AATAATTATAA-TA-TTAAATGAATAATTATTTG
*
10372483 AATAGTTATAATATTAAATGAATAATTAT
1 AATAATTATAATATTAAATGAATAATTAT
10372512 GTGTTTATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
30 6 0.23
31 5 0.19
32 15 0.58
ACGTcount: A:0.49, C:0.02, G:0.05, T:0.44
Consensus pattern (32 bp):
AATAATTATAATATTAAATGAATAATTATTTG
Found at i:10372504 original size:20 final size:20
Alignment explanation
Indices: 10372470--10372511 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
10372460 AACTATTTAA
** *
10372470 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
10372490 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
10372510 AT
1 AT
10372512 GTGTTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:10376263 original size:30 final size:30
Alignment explanation
Indices: 10376223--10376286 Score: 112
Period size: 30 Copynumber: 2.2 Consensus size: 30
10376213 TGAATATTGT
10376223 ATTT-TTAATTTTGTTATTATTTTAAAGGC
1 ATTTGTTAATTTTGTTATTATTTTAAAGGC
*
10376252 ATTTGTTAATTTTGTTATTATTTTAGAGGC
1 ATTTGTTAATTTTGTTATTATTTTAAAGGC
10376282 ATTTG
1 ATTTG
10376287 CTTGTTAAGT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 4 0.12
30 29 0.88
ACGTcount: A:0.25, C:0.03, G:0.14, T:0.58
Consensus pattern (30 bp):
ATTTGTTAATTTTGTTATTATTTTAAAGGC
Found at i:10383161 original size:116 final size:116
Alignment explanation
Indices: 10382957--10383183 Score: 366
Period size: 116 Copynumber: 2.0 Consensus size: 116
10382947 GTCAAAACCC
* *
10382957 CAGTAAGATCTTCCAATACGTCCACTAAAATACTAAATCAGCAAGAACTACTTATCTTGTGACAT
1 CAGTAAGATCTTCCAATACGTCCACTAAAATACTAAATCAGCAAGAACTACTTATCTTCTAACAT
*
10383022 CACAATCCAGACCGATTTAGGGTTAAGGTGTTCACGGATAAGCCATTACCT
66 CACAATCCAGACCAATTTAGGGTTAAGGTGTTCACGGATAAGCCATTACCT
*
10383073 CAGTAAGATCTTCCAATACGTCCACTAAAATACTAAAT-TGACAAGAACTACTTATCTTCTAACA
1 CAGTAAGATCTTCCAATACGTCCACTAAAATACTAAATCAG-CAAGAACTACTTATCTTCTAACA
* * * *
10383137 TCACAGTCTAGATCAATTTAGGGTTAAGGTGTTTACGGATAAGCCAT
65 TCACAATCCAGACCAATTTAGGGTTAAGGTGTTCACGGATAAGCCAT
10383184 ACCGAATTTG
Statistics
Matches: 102, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
115 1 0.01
116 101 0.99
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.28
Consensus pattern (116 bp):
CAGTAAGATCTTCCAATACGTCCACTAAAATACTAAATCAGCAAGAACTACTTATCTTCTAACAT
CACAATCCAGACCAATTTAGGGTTAAGGTGTTCACGGATAAGCCATTACCT
Found at i:10388148 original size:20 final size:20
Alignment explanation
Indices: 10388104--10388150 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
10388094 GATGACTAAA
10388104 TAAAAAT-A-TTAAATAATT
1 TAAAAATAATTTAAATAATT
10388122 T-AAAATAATTTAAA-AATTT
1 TAAAAATAATTTAAATAA-TT
10388141 TAAAAATAAT
1 TAAAAATAAT
10388151 ATGGACGGGT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
17 5 0.20
18 4 0.16
19 8 0.32
20 8 0.32
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (20 bp):
TAAAAATAATTTAAATAATT
Found at i:10388962 original size:18 final size:18
Alignment explanation
Indices: 10388939--10388984 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
10388929 ATTTACAGTT
*
10388939 TTATTACTTTATC-AATAA
1 TTATTA-TTTATCAAAAAA
10388957 TTATTAATTT-TCAAAAAA
1 TTATT-ATTTATCAAAAAA
10388975 TTATTATTTA
1 TTATTATTTA
10388985 AATATTTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
17 6 0.25
18 17 0.71
19 1 0.04
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.52
Consensus pattern (18 bp):
TTATTATTTATCAAAAAA
Found at i:10391382 original size:18 final size:18
Alignment explanation
Indices: 10391350--10391392 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 18
10391340 TGCTAAACAA
10391350 TAAAAAT-TTTAAATA-T
1 TAAAAATATTTAAATATT
10391366 TAAAAATATTATAAATATT
1 TAAAAATATT-TAAATATT
10391385 TAAAAATA
1 TAAAAATA
10391393 ATAAGAAAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.29
17 2 0.08
18 6 0.25
19 9 0.38
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
TAAAAATATTTAAATATT
Found at i:10394881 original size:24 final size:25
Alignment explanation
Indices: 10394854--10394908 Score: 71
Period size: 23 Copynumber: 2.3 Consensus size: 25
10394844 TAAAATAACT
*
10394854 AATTTTTATATATT-TA-TTTTTATA
1 AATTTTTATAAATTATATTTTTTA-A
10394878 AA-TTTTATAAATTATATTTTTTAA
1 AATTTTTATAAATTATATTTTTTAA
10394902 AATTTTT
1 AATTTTT
10394909 TGCACTCATT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
23 10 0.37
24 7 0.26
25 10 0.37
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (25 bp):
AATTTTTATAAATTATATTTTTTAA
Found at i:10394897 original size:23 final size:24
Alignment explanation
Indices: 10394857--10394907 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
10394847 AATAACTAAT
*
10394857 TTTTATATATTTATTTTTAT-AAA
1 TTTTATAAATTTATTTTTATAAAA
10394880 TTTTATAAATTATATTTTT-TAAAA
1 TTTTATAAATT-TATTTTTATAAAA
10394904 TTTT
1 TTTT
10394908 TTGCACTCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
23 11 0.44
24 14 0.56
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (24 bp):
TTTTATAAATTTATTTTTATAAAA
Found at i:10396681 original size:26 final size:23
Alignment explanation
Indices: 10396640--10396686 Score: 67
Period size: 26 Copynumber: 1.9 Consensus size: 23
10396630 TTGCTGAGAA
10396640 ATATTTATTTTAATATTTTTAGT
1 ATATTTATTTTAATATTTTTAGT
10396663 ATATTTAATTATTATATATTTTTA
1 ATATTT-ATT-TTA-ATATTTTTA
10396687 ATTTTTTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 6 0.29
24 3 0.14
25 3 0.14
26 9 0.43
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (23 bp):
ATATTTATTTTAATATTTTTAGT
Found at i:10396697 original size:18 final size:17
Alignment explanation
Indices: 10396645--10396698 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 17
10396635 GAGAAATATT
10396645 TATTTTAATATTTTTAGTA
1 TATTTTAAT-TTTTTA-TA
*
10396664 TA-TTTAA-TTATTATA
1 TATTTTAATTTTTTATA
10396679 TATTTTTAATTTTTTATA
1 TA-TTTTAATTTTTTATA
10396697 TA
1 TA
10396699 AAAAATAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
15 4 0.13
16 5 0.17
17 5 0.17
18 14 0.47
19 2 0.07
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (17 bp):
TATTTTAATTTTTTATA
Found at i:10397676 original size:31 final size:31
Alignment explanation
Indices: 10397620--10397686 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
10397610 AAATTAGTCT
* * * *
10397620 TTGAACTTTACAATTTTTCTTATATTGCAAC
1 TTGAACTTAACAATTATTATCATATTGCAAC
**
10397651 TTGAACTTAACAATTATTATCATATTGGGAC
1 TTGAACTTAACAATTATTATCATATTGCAAC
10397682 TTGAA
1 TTGAA
10397687 TCTTTTTTTG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.33, C:0.13, G:0.10, T:0.43
Consensus pattern (31 bp):
TTGAACTTAACAATTATTATCATATTGCAAC
Found at i:10404747 original size:2 final size:2
Alignment explanation
Indices: 10404740--10404772 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
10404730 ATATGCGCAT
10404740 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
10404773 TCTATATCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:10410296 original size:43 final size:43
Alignment explanation
Indices: 10410244--10410336 Score: 132
Period size: 43 Copynumber: 2.1 Consensus size: 43
10410234 ACCTTGCTTA
* *
10410244 TAAACCAGACATGTAAGACTACAACCTTAACATATCAAGAATCT
1 TAAA-CAGACATCTAAGACTACAACCTTAAAATATCAAGAATCT
* *
10410288 TAAACAGACATCTAAGACTACAGCCTTAAAATGTCAAGAATCT
1 TAAACAGACATCTAAGACTACAACCTTAAAATATCAAGAATCT
*
10410331 TCAACA
1 TAAACA
10410337 TGGAATAAGA
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
43 40 0.91
44 4 0.09
ACGTcount: A:0.45, C:0.23, G:0.10, T:0.23
Consensus pattern (43 bp):
TAAACAGACATCTAAGACTACAACCTTAAAATATCAAGAATCT
Found at i:10414231 original size:10 final size:10
Alignment explanation
Indices: 10414216--10414247 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
10414206 GACCATAACC
10414216 CCAATTTTGA
1 CCAATTTTGA
10414226 CCAA-TTT-A
1 CCAATTTTGA
10414234 CCAATTTTGA
1 CCAATTTTGA
10414244 CCAA
1 CCAA
10414248 CGCCATATCC
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
8 5 0.25
9 6 0.30
10 9 0.45
ACGTcount: A:0.34, C:0.25, G:0.06, T:0.34
Consensus pattern (10 bp):
CCAATTTTGA
Found at i:10419675 original size:11 final size:9
Alignment explanation
Indices: 10419659--10419694 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
10419649 TTGAGAGGGT
10419659 TTGAGAGAA
1 TTGAGAGAA
10419668 TTGAGAGAA
1 TTGAGAGAA
*
10419677 TTGAGAGAG
1 TTGAGAGAA
*
10419686 TTGATAGAA
1 TTGAGAGAA
10419695 GGATGTGAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.42, C:0.00, G:0.33, T:0.25
Consensus pattern (9 bp):
TTGAGAGAA
Found at i:10420865 original size:41 final size:41
Alignment explanation
Indices: 10420794--10420987 Score: 196
Period size: 41 Copynumber: 4.7 Consensus size: 41
10420784 TTTTAAACCT
* *
10420794 TTAGCGGCATTTTTGTCTAAGCGCCGCTAATGCTCGTATCA
1 TTAGCGGCATTTTTATCTAAGCGCCACTAATGCTCGTATCA
* * * * *
10420835 TTAGTGGCGTTTTTATCTGAGCGCCACTAATTCTCTGT-TCT
1 TTAGCGGCATTTTTATCTAAGCGCCACTAATGCTC-GTATCA
** * *
10420876 TTAGCGGTGTTTTTGTCTAAGCGCCGCTAATGCTCGTATCA
1 TTAGCGGCATTTTTATCTAAGCGCCACTAATGCTCGTATCA
* * * *
10420917 TTAGTGGCATTTTTATCTGAGCGCCACTAATTCTCTGT-TCT
1 TTAGCGGCATTTTTATCTAAGCGCCACTAATGCTC-GTATCA
*
10420958 TTAGCGGCATTTTT-TGCTAAGCGCCGCTAA
1 TTAGCGGCATTTTTAT-CTAAGCGCCACTAA
10420988 AGTTCGTGTT
Statistics
Matches: 124, Mismatches: 25, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
40 3 0.02
41 117 0.94
42 4 0.03
ACGTcount: A:0.18, C:0.23, G:0.21, T:0.39
Consensus pattern (41 bp):
TTAGCGGCATTTTTATCTAAGCGCCACTAATGCTCGTATCA
Found at i:10420930 original size:82 final size:81
Alignment explanation
Indices: 10420792--10420987 Score: 331
Period size: 82 Copynumber: 2.4 Consensus size: 81
10420782 TTTTTTAAAC
* *
10420792 CTTTAGCGGCATTTTTGTCTAAGCGCCGCTAATGCTCGTATCATTAGTGGCGTTTTTATCTGAGC
1 CTTTAGCGG-TTTTTTGTCTAAGCGCCGCTAATGCTCGTATCATTAGTGGCATTTTTATCTGAGC
10420857 GCCACTAATTCTCTGTT
65 GCCACTAATTCTCTGTT
10420874 CTTTAGCGGTGTTTTTGTCTAAGCGCCGCTAATGCTCGTATCATTAGTGGCATTTTTATCTGAGC
1 CTTTAGCGGT-TTTTTGTCTAAGCGCCGCTAATGCTCGTATCATTAGTGGCATTTTTATCTGAGC
10420939 GCCACTAATTCTCTGTT
65 GCCACTAATTCTCTGTT
10420956 CTTTAGCGGCATTTTTTG-CTAAGCGCCGCTAA
1 CTTTAGCGG--TTTTTTGTCTAAGCGCCGCTAA
10420988 AGTTCGTGTT
Statistics
Matches: 109, Mismatches: 2, Indels: 6
0.93 0.02 0.05
Matches are distributed among these distances:
82 102 0.94
83 6 0.06
84 1 0.01
ACGTcount: A:0.17, C:0.23, G:0.21, T:0.39
Consensus pattern (81 bp):
CTTTAGCGGTTTTTTGTCTAAGCGCCGCTAATGCTCGTATCATTAGTGGCATTTTTATCTGAGCG
CCACTAATTCTCTGTT
Found at i:10422136 original size:8 final size:10
Alignment explanation
Indices: 10422114--10422150 Score: 65
Period size: 10 Copynumber: 3.7 Consensus size: 10
10422104 TATTTTTACT
10422114 TATATATGGA
1 TATATATGGA
*
10422124 TATATATGAA
1 TATATATGGA
10422134 TATATATGGA
1 TATATATGGA
10422144 TATATAT
1 TATATAT
10422151 ATAGTTATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.43, C:0.00, G:0.14, T:0.43
Consensus pattern (10 bp):
TATATATGGA
Found at i:10422259 original size:27 final size:27
Alignment explanation
Indices: 10422218--10422269 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
10422208 AATAAACAAA
* *
10422218 TAAATAAGTTAGTAATTATTTATTTGT
1 TAAATAAATTAGTAATTAATTATTTGT
*
10422245 TAAATAAATTGGTAATTAATTATTT
1 TAAATAAATTAGTAATTAATTATTT
10422270 AAAAGTAAGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.40, C:0.00, G:0.10, T:0.50
Consensus pattern (27 bp):
TAAATAAATTAGTAATTAATTATTTGT
Found at i:10423522 original size:17 final size:17
Alignment explanation
Indices: 10423500--10423537 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
10423490 CTGACTCTGG
10423500 ATTAGCTGGAAATCACC
1 ATTAGCTGGAAATCACC
10423517 ATTAGCTGGAAATCACC
1 ATTAGCTGGAAATCACC
10423534 ATTA
1 ATTA
10423538 TTAATTACCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.26
Consensus pattern (17 bp):
ATTAGCTGGAAATCACC
Found at i:10424853 original size:29 final size:29
Alignment explanation
Indices: 10424819--10424889 Score: 133
Period size: 29 Copynumber: 2.4 Consensus size: 29
10424809 TACTTCAAAT
10424819 TAATGAATAATTATCGATCTTAACTTACA
1 TAATGAATAATTATCGATCTTAACTTACA
*
10424848 TAATGACTAATTATCGATCTTAACTTACA
1 TAATGAATAATTATCGATCTTAACTTACA
10424877 TAATGAATAATTA
1 TAATGAATAATTA
10424890 AAATTATATT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.42, C:0.13, G:0.07, T:0.38
Consensus pattern (29 bp):
TAATGAATAATTATCGATCTTAACTTACA
Found at i:10425155 original size:9 final size:9
Alignment explanation
Indices: 10425137--10425271 Score: 91
Period size: 9 Copynumber: 15.2 Consensus size: 9
10425127 CTTATATTTA
*
10425137 AACTTTCAT
1 AACTTACAT
10425146 AACTTACAT
1 AACTTACAT
*
10425155 AA-TAACAT
1 AACTTACAT
10425163 ATGGACTTACAT
1 A---ACTTACAT
*
10425175 TA--TACAT
1 AACTTACAT
* *
10425182 AGCATACAT
1 AACTTACAT
10425191 AACTTACAT
1 AACTTACAT
*
10425200 AA--TACAA
1 AACTTACAT
10425207 AACTTACAT
1 AACTTACAT
*
10425216 AACTTAAAT
1 AACTTACAT
* *
10425225 ATCTTACAC
1 AACTTACAT
*
10425234 AACTTACAC
1 AACTTACAT
*
10425243 AACTTAAAT
1 AACTTACAT
* *
10425252 AATTTAAAT
1 AACTTACAT
10425261 AACTTACAT
1 AACTTACAT
10425270 AA
1 AA
10425272 TACATAATAT
Statistics
Matches: 98, Mismatches: 20, Indels: 16
0.73 0.15 0.12
Matches are distributed among these distances:
7 11 0.11
8 6 0.06
9 75 0.77
11 1 0.01
12 5 0.05
ACGTcount: A:0.47, C:0.19, G:0.02, T:0.32
Consensus pattern (9 bp):
AACTTACAT
Found at i:10425197 original size:25 final size:25
Alignment explanation
Indices: 10425167--10425221 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
10425157 TAACATATGG
* * *
10425167 ACTTACATTATACATAGCATACATA
1 ACTTACATAATACAAAACATACATA
*
10425192 ACTTACATAATACAAAACTTACATA
1 ACTTACATAATACAAAACATACATA
10425217 ACTTA
1 ACTTA
10425222 AATATCTTAC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.47, C:0.20, G:0.02, T:0.31
Consensus pattern (25 bp):
ACTTACATAATACAAAACATACATA
Found at i:10425320 original size:9 final size:9
Alignment explanation
Indices: 10425186--10425496 Score: 50
Period size: 9 Copynumber: 34.4 Consensus size: 9
10425176 ATACATAGCA
*
10425186 TACATAACT
1 TACATAAAT
10425195 TACAT-AA-
1 TACATAAAT
10425202 TACA-AAACT
1 TACATAAA-T
*
10425211 TACATAACT
1 TACATAAAT
* **
10425220 TAAATATCT
1 TACATAAAT
* *
10425229 TACACAACT
1 TACATAAAT
* *
10425238 TACACAACT
1 TACATAAAT
* *
10425247 TAAATAATT
1 TACATAAAT
* *
10425256 TAAATAACT
1 TACATAAAT
10425265 TACAT-AA-
1 TACATAAAT
10425272 TACATAATAT
1 TACATAA-AT
10425282 GATACATAAAT
1 --TACATAAAT
10425293 TACATTAATAT
1 TACA-TAA-AT
10425304 GATACATAAAT
1 --TACATAAAT
*
10425315 TACATAACT
1 TACATAAAT
*
10425324 TA-ATTAAT
1 TACATAAAT
10425332 TA-AT--A-
1 TACATAAAT
*
10425337 TACATAAGT
1 TACATAAAT
*
10425346 TACATAACT
1 TACATAAAT
* *
10425355 TA-GTTAAT
1 TACATAAAT
*
10425363 TA-AT-TA-
1 TACATAAAT
*
10425369 TACATAAGT
1 TACATAAAT
*
10425378 TACATAACT
1 TACATAAAT
*
10425387 TA-ATTAAT
1 TACATAAAT
*
10425395 T--A-ACA-
1 TACATAAAT
10425400 TACATAAAT
1 TACATAAAT
10425409 TACATTAATATT
1 TACA-TAA-A-T
10425421 ATACATAAAT
1 -TACATAAAT
10425431 TACATAACTTAAT
1 TACAT-A---AAT
*
10425444 TA-ATGAAT
1 TACATAAAT
*
10425452 ATACATAAGT
1 -TACATAAAT
*
10425462 TACATAACT
1 TACATAAAT
10425471 TACATTAATAT
1 TACA-TAA-AT
10425482 GATACATAAAT
1 --TACATAAAT
10425493 TACA
1 TACA
10425497 AAAAATTGCA
Statistics
Matches: 228, Mismatches: 36, Indels: 76
0.67 0.11 0.22
Matches are distributed among these distances:
5 3 0.01
6 6 0.03
7 16 0.07
8 27 0.12
9 112 0.49
10 17 0.07
11 11 0.05
12 19 0.08
13 17 0.07
ACGTcount: A:0.49, C:0.13, G:0.03, T:0.35
Consensus pattern (9 bp):
TACATAAAT
Found at i:10425340 original size:31 final size:31
Alignment explanation
Indices: 10425284--10425643 Score: 288
Period size: 31 Copynumber: 11.6 Consensus size: 31
10425274 CATAATATGA
*
10425284 TACATAAATTACATTAA-T-ATGATACATAAAT
1 TACATAACTTA-ATTAATTAAT-ATACATAAAT
*
10425315 TACATAACTTAATTAATTAATATACATAAGT
1 TACATAACTTAATTAATTAATATACATAAAT
* *
10425346 TACATAACTTAGTTAATTAATTATACATAAGT
1 TACATAACTTAATTAATTAA-TATACATAAAT
*
10425378 TACATAACTTAATTAATTAACATACATAAAT
1 TACATAACTTAATTAATTAATATACATAAAT
10425409 TAC---A-TTAA-T-A-T--TATACATAAAT
1 TACATAACTTAATTAATTAATATACATAAAT
* *
10425431 TACATAACTTAATTAATGAATATACATAAGT
1 TACATAACTTAATTAATTAATATACATAAAT
10425462 TACATAACTTACATTAA-T-ATGATACATAAAT
1 TACATAACTTA-ATTAATTAAT-ATACATAAAT
* * *
10425493 TACAAAAAATTGCAATTAA-TATTATACATATAACT
1 TAC-ATAACTT--AATTAATTAATATACATA-AA-T
* *
10425528 TAC--AACTTACA-TAACTTACA-ACTTAAATAACT
1 TACATAACTTA-ATTAA-TTA-ATA--TACATAAAT
** *
10425560 TACATAACTTACATTTTTTTAATTATTCATAAAT
1 TACATAACTTA-A-TTAATTAA-TATACATAAAT
*
10425594 TACATAACTTAATTAGTTAATATACATAAAT
1 TACATAACTTAATTAATTAATATACATAAAT
10425625 TACATAACTTAATTAATTA
1 TACATAACTTAATTAATTA
10425644 CTCAGTATTA
Statistics
Matches: 270, Mismatches: 27, Indels: 64
0.75 0.07 0.18
Matches are distributed among these distances:
22 13 0.05
24 1 0.00
25 2 0.01
26 5 0.02
27 5 0.02
28 2 0.01
30 11 0.04
31 113 0.42
32 59 0.22
33 15 0.06
34 35 0.13
35 7 0.03
36 2 0.01
ACGTcount: A:0.48, C:0.12, G:0.03, T:0.38
Consensus pattern (31 bp):
TACATAACTTAATTAATTAATATACATAAAT
Found at i:10425424 original size:22 final size:21
Alignment explanation
Indices: 10425399--10425496 Score: 71
Period size: 22 Copynumber: 4.7 Consensus size: 21
10425389 ATTAATTAAC
10425399 ATACATAAATTACATTAATATT
1 ATACATAAATTACA-TAATATT
*
10425421 ATACATAAATTACATAACT-TA
1 ATACATAAATTACATAA-TATT
* *
10425442 ATTA-ATGAATATACAT-A-AGT
1 A-TACATAAAT-TACATAATATT
* *
10425462 -TACATAACTTACATTAATATG
1 ATACATAAATTACA-TAATATT
10425483 ATACATAAATTACA
1 ATACATAAATTACA
10425497 AAAAATTGCA
Statistics
Matches: 58, Mismatches: 9, Indels: 18
0.68 0.11 0.21
Matches are distributed among these distances:
18 6 0.10
19 5 0.09
20 1 0.02
21 12 0.21
22 34 0.59
ACGTcount: A:0.50, C:0.11, G:0.03, T:0.36
Consensus pattern (21 bp):
ATACATAAATTACATAATATT
Found at i:10425543 original size:16 final size:16
Alignment explanation
Indices: 10425522--10425573 Score: 77
Period size: 16 Copynumber: 3.1 Consensus size: 16
10425512 TATTATACAT
10425522 ATAACTTACAACTTAC
1 ATAACTTACAACTTAC
*
10425538 ATAACTTACAACTTAA
1 ATAACTTACAACTTAC
10425554 ATAACTTACATAACTTAC
1 ATAACTTAC--AACTTAC
10425572 AT
1 AT
10425574 TTTTTTAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
16 24 0.75
18 8 0.25
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (16 bp):
ATAACTTACAACTTAC
Found at i:10425545 original size:9 final size:9
Alignment explanation
Indices: 10425522--10425573 Score: 67
Period size: 9 Copynumber: 6.2 Consensus size: 9
10425512 TATTATACAT
10425522 ATAACTTAC
1 ATAACTTAC
10425531 --AACTTAC
1 ATAACTTAC
10425538 ATAACTTAC
1 ATAACTTAC
*
10425547 --AACTTAA
1 ATAACTTAC
10425554 ATAACTTAC
1 ATAACTTAC
10425563 ATAACTTAC
1 ATAACTTAC
10425572 AT
1 AT
10425574 TTTTTTAATT
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
7 13 0.35
9 24 0.65
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (9 bp):
ATAACTTAC
Found at i:10425601 original size:163 final size:165
Alignment explanation
Indices: 10425418--10425717 Score: 421
Period size: 163 Copynumber: 1.8 Consensus size: 165
10425408 TTACATTAAT
*
10425418 ATTATACATAAATTACATAACTTAATTAATGAATATACATAAGTTACATAACTTACATTAA-TA-
1 ATTATACATAAATTACATAACTTAATTAATGAATATACATAAATTACATAACTTA-ATTAATTAC
10425481 T-G-ATACATAAATTACAAAAAATTG-CAATTAATATTATACATATAACTTACAACTTACATAAC
65 TAGTATACATAAATTACAAAAAATTGTCAATTAATATTATAC--ATAACTTACAACTTACATAAC
10425543 TTACAACTTAAATAACTTACATAACTTACATTTTTTTA
128 TTACAACTTAAATAACTTACATAACTTACATTTTTTTA
* * *
10425581 ATTATTCATAAATTACATAACTTAATTAGTTAATATACATAAATTACATAACTTAATTAATTACT
1 ATTATACATAAATTACATAACTTAATTAATGAATATACATAAATTACATAACTTAATTAATTACT
* ** * *
10425646 CAGTATTATACATAAATTACATAACTTTGTTAATTAATGTTATACATAACTTACAACTTACATAA
66 -AG---TATACATAAATTACAAAAAATTGTCAATTAATATTATACATAACTTACAACTTACATAA
10425711 CTTACAA
127 CTTACAA
10425718 TTTTTTAATT
Statistics
Matches: 119, Mismatches: 9, Indels: 12
0.85 0.06 0.09
Matches are distributed among these distances:
162 5 0.04
163 53 0.45
164 1 0.01
166 1 0.01
169 27 0.23
170 19 0.16
171 13 0.11
ACGTcount: A:0.46, C:0.13, G:0.03, T:0.38
Consensus pattern (165 bp):
ATTATACATAAATTACATAACTTAATTAATGAATATACATAAATTACATAACTTAATTAATTACT
AGTATACATAAATTACAAAAAATTGTCAATTAATATTATACATAACTTACAACTTACATAACTTA
CAACTTAAATAACTTACATAACTTACATTTTTTTA
Found at i:10425709 original size:16 final size:16
Alignment explanation
Indices: 10425688--10425798 Score: 66
Period size: 16 Copynumber: 6.7 Consensus size: 16
10425678 ATTAATGTTA
10425688 TACATAACTTACAACT
1 TACATAACTTACAACT
10425704 TACATAACTTACAA-T
1 TACATAACTTACAACT
*** *
10425719 TTTTTAA-TTATTCGTAAAT
1 TACATAACTTA--C--AACT
*
10425738 TACATAACTTACTTAATT
1 TACATAACTTAC--AACT
* * *
10425756 TTCATAA-TAAATAACT
1 TACATAACT-TACAACT
10425772 TACATAACTTACAACT
1 TACATAACTTACAACT
10425788 TACATAACTTA
1 TACATAACTTA
10425799 TACGATATAC
Statistics
Matches: 72, Mismatches: 15, Indels: 16
0.70 0.15 0.16
Matches are distributed among these distances:
14 3 0.04
15 5 0.07
16 40 0.56
17 2 0.03
18 14 0.19
19 5 0.07
20 3 0.04
ACGTcount: A:0.42, C:0.17, G:0.01, T:0.40
Consensus pattern (16 bp):
TACATAACTTACAACT
Found at i:10425778 original size:9 final size:9
Alignment explanation
Indices: 10425737--10425820 Score: 61
Period size: 9 Copynumber: 9.8 Consensus size: 9
10425727 TATTCGTAAA
10425737 TTACATAAC
1 TTACATAAC
* *
10425746 TTACTTAAT
1 TTACATAAC
*
10425755 TTTCATAA-
1 TTACATAAC
*
10425763 -TAAATAAC
1 TTACATAAC
10425771 TTACATAAC
1 TTACATAAC
10425780 TTAC--AAC
1 TTACATAAC
10425787 TTACATAAC
1 TTACATAAC
* **
10425796 TTATACGA-
1 TTACATAAC
10425804 TATACATAAC
1 T-TACATAAC
10425814 TTACATA
1 TTACATA
10425821 GCATAATTTG
Statistics
Matches: 56, Mismatches: 13, Indels: 12
0.69 0.16 0.15
Matches are distributed among these distances:
7 12 0.21
8 1 0.02
9 42 0.75
10 1 0.02
ACGTcount: A:0.44, C:0.18, G:0.01, T:0.37
Consensus pattern (9 bp):
TTACATAAC
Found at i:10431436 original size:66 final size:65
Alignment explanation
Indices: 10431328--10431498 Score: 209
Period size: 66 Copynumber: 2.6 Consensus size: 65
10431318 GAGCAAATCA
* * * * *
10431328 CACAACTTAAAGCGGAGGCAACATCGAGAGAAGCTGATGTTCAA-AGAAGATATGAAGAACTCCA
1 CACAACTTAAAGCGGATGCAGCAGCGAGAGAAGCTGAGGTTCAACAAAAG-TATGAAGAACTCCA
10431392 G
65 G
10431393 CTACAACTTAAAGCGGATGCAGCAGCGAGAGAAGCTGAGGTTCAACAAAAGTATGAAGAACTCCA
1 C-ACAACTTAAAGCGGATGCAGCAGCGAGAGAAGCTGAGGTTCAACAAAAGTATGAAGAACTCCA
10431458 G
65 G
* * * * * *
10431459 CAGCAGCTTAGAGCAGATGCGGCAGCAAGAGAAGCAGAGG
1 CA-CAACTTAAAGCGGATGCAGCAGCGAGAGAAGCTGAGG
10431499 CGGCAGCGAG
Statistics
Matches: 92, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
65 2 0.02
66 86 0.93
67 4 0.04
ACGTcount: A:0.39, C:0.19, G:0.28, T:0.13
Consensus pattern (65 bp):
CACAACTTAAAGCGGATGCAGCAGCGAGAGAAGCTGAGGTTCAACAAAAGTATGAAGAACTCCAG
Found at i:10431496 original size:21 final size:21
Alignment explanation
Indices: 10431470--10431541 Score: 74
Period size: 21 Copynumber: 3.4 Consensus size: 21
10431460 AGCAGCTTAG
*
10431470 AGCAGATGCGGCAGCAAGAGA
1 AGCAGAGGCGGCAGCAAGAGA
*
10431491 AGCAGAGGCGGCAGCGAGAGA
1 AGCAGAGGCGGCAGCAAGAGA
* * * *
10431512 AGTACAGGCTGCAGCGAG-GAA
1 AGCAGAGGCGGCAGCAAGAG-A
10431533 AGCAGAGGC
1 AGCAGAGGC
10431542 TAAAGCGAGG
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
20 1 0.02
21 42 0.98
ACGTcount: A:0.35, C:0.19, G:0.42, T:0.04
Consensus pattern (21 bp):
AGCAGAGGCGGCAGCAAGAGA
Found at i:10431526 original size:42 final size:41
Alignment explanation
Indices: 10431480--10431581 Score: 123
Period size: 42 Copynumber: 2.4 Consensus size: 41
10431470 AGCAGATGCG
* **
10431480 GCAGCAAGAGAAGCAGAGGCGGCAGCGAGAGAAGTACAGGCT
1 GCAGCGAG-GAAGCAGAGGCGAAAGCGAGAGAAGTACAGGCT
* * *
10431522 GCAGCGAGGAAAGCAGAGGCTAAAGCGAGGGAAGTAGAGGCT
1 GCAGCGAGG-AAGCAGAGGCGAAAGCGAGAGAAGTACAGGCT
10431564 GCAGCGAGGGAAGCAGAG
1 GCAGCGA-GGAAGCAGAG
10431582 CAGCGTCAAA
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
41 1 0.02
42 49 0.94
43 2 0.04
ACGTcount: A:0.35, C:0.17, G:0.43, T:0.05
Consensus pattern (41 bp):
GCAGCGAGGAAGCAGAGGCGAAAGCGAGAGAAGTACAGGCT
Found at i:10431542 original size:21 final size:21
Alignment explanation
Indices: 10431490--10431581 Score: 96
Period size: 21 Copynumber: 4.4 Consensus size: 21
10431480 GCAGCAAGAG
*
10431490 AAGCAGAGGCGGCAGCGA-GA
1 AAGCAGAGGCTGCAGCGAGGA
* *
10431510 GAAGTACAGGCTGCAGCGAGGA
1 -AAGCAGAGGCTGCAGCGAGGA
** *
10431532 AAGCAGAGGCTAAAGCGAGGG
1 AAGCAGAGGCTGCAGCGAGGA
* *
10431553 AAGTAGAGGCTGCAGCGAGGG
1 AAGCAGAGGCTGCAGCGAGGA
10431574 AAGCAGAG
1 AAGCAGAG
10431582 CAGCGTCAAA
Statistics
Matches: 58, Mismatches: 12, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
21 56 0.97
22 2 0.03
ACGTcount: A:0.35, C:0.16, G:0.43, T:0.05
Consensus pattern (21 bp):
AAGCAGAGGCTGCAGCGAGGA
Found at i:10431764 original size:10 final size:9
Alignment explanation
Indices: 10431745--10431774 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
10431735 TAATACGAAT
10431745 TTTATTATA
1 TTTATTATA
10431754 TTTATTGATA
1 TTTATT-ATA
10431764 TTTATTATA
1 TTTATTATA
10431773 TT
1 TT
10431775 ATTTGTTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 11 0.55
10 9 0.45
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (9 bp):
TTTATTATA
Found at i:10432043 original size:43 final size:43
Alignment explanation
Indices: 10431927--10432114 Score: 148
Period size: 43 Copynumber: 4.3 Consensus size: 43
10431917 CTAAAGGTGT
*
10431927 TGGTCTTTAGCGGCGTTTTTGGTAAAAAGCGCCGCTATAGACCA
1 TGGTCTTTAGCGGCGTTTTTAGT-AAAAGCGCCGCTATAGACCA
* * * * *
10431971 GGGTCTTTAGTGGCGTTTGT-G-ACCGAAGCGCCGCTATAGATCA
1 TGGTCTTTAGCGGCGTTTTTAGTA--AAAGCGCCGCTATAGACCA
* * *
10432014 TGGTCTATT-GCGGCGTTTTTAGTAAAAGCGCCGATAAAGACCC
1 TGGTCT-TTAGCGGCGTTTTTAGTAAAAGCGCCGCTATAGACCA
* * * ** * * *
10432057 TGATCTATAGCGGCGCTTTTACCAAAAACGCCGCTAAAGACCC
1 TGGTCTTTAGCGGCGTTTTTAGTAAAAGCGCCGCTATAGACCA
* *
10432100 TGATCTATAGCGGCG
1 TGGTCTTTAGCGGCG
10432115 CTTAGCATAA
Statistics
Matches: 118, Mismatches: 20, Indels: 13
0.78 0.13 0.09
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 95 0.81
44 20 0.17
45 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.27
Consensus pattern (43 bp):
TGGTCTTTAGCGGCGTTTTTAGTAAAAGCGCCGCTATAGACCA
Found at i:10432092 original size:86 final size:85
Alignment explanation
Indices: 10431999--10432266 Score: 353
Period size: 86 Copynumber: 3.1 Consensus size: 85
10431989 GTGACCGAAG
* * * * * * *
10431999 CGCCGCTATAGATCATGGTCTATTGCGGCGTTTTTAGTAAAAGCGCCGA-TAAAGACCCTGATCT
1 CGCCGCTAAAGACCCTGATCTATAGCGGCG-TTTTAGTAAAAACGCC-ACTAAAGACCTTGATCT
*
10432063 ATAGCGGCGCTTTTACCAAAAA
64 ATAGCGGCACTTTTACCAAAAA
*
10432085 CGCCGCTAAAGACCCTGATCTATAGCGGCG-CTTAGCATAAAAACGCCACTAAAGACCTTGATCT
1 CGCCGCTAAAGACCCTGATCTATAGCGGCGTTTTAG--TAAAAACGCCACTAAAGACCTTGATCT
10432149 ATAGCGGCACTTTTACCAAAAA
64 ATAGCGGCACTTTTACCAAAAA
* *
10432171 CGCCGCTAAAGACCCTGATCTATAGCGGCG-CTTAGCGCAAAAACGCCACTAAAGACCTTGATCT
1 CGCCGCTAAAGACCCTGATCTATAGCGGCGTTTTA--GTAAAAACGCCACTAAAGACCTTGATCT
10432235 ATAGCGGCACTTTTACCAAAAA
64 ATAGCGGCACTTTTACCAAAAA
*
10432257 CACCGCTAAA
1 CGCCGCTAAA
10432267 TGTATTAGTC
Statistics
Matches: 166, Mismatches: 11, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
84 4 0.02
85 1 0.01
86 160 0.96
88 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.22
Consensus pattern (85 bp):
CGCCGCTAAAGACCCTGATCTATAGCGGCGTTTTAGTAAAAACGCCACTAAAGACCTTGATCTAT
AGCGGCACTTTTACCAAAAA
Found at i:10432115 original size:43 final size:43
Alignment explanation
Indices: 10431999--10432266 Score: 310
Period size: 43 Copynumber: 6.2 Consensus size: 43
10431989 GTGACCGAAG
* * * * * * ** *
10431999 CGCCGCTATAGATCATGGTCTATTGCGGCGTTTTTAGTAAAAG
1 CGCCGCTAAAGACCCTGATCTATAGCGGCGCTTTTACCAAAAA
*
10432042 CGCCGATAAAGACCCTGATCTATAGCGGCGCTTTTACCAAAAA
1 CGCCGCTAAAGACCCTGATCTATAGCGGCGCTTTTACCAAAAA
*
10432085 CGCCGCTAAAGACCCTGATCTATAGCGGCGC--TTAGCATAAAAA
1 CGCCGCTAAAGACCCTGATCTATAGCGGCGCTTTTA-C-CAAAAA
* * *
10432128 CGCCACTAAAGACCTTGATCTATAGCGGCACTTTTACCAAAAA
1 CGCCGCTAAAGACCCTGATCTATAGCGGCGCTTTTACCAAAAA
10432171 CGCCGCTAAAGACCCTGATCTATAGCGGCGC--TTAGCGCAAAAA
1 CGCCGCTAAAGACCCTGATCTATAGCGGCGCTTTTA-C-CAAAAA
* * *
10432214 CGCCACTAAAGACCTTGATCTATAGCGGCACTTTTACCAAAAA
1 CGCCGCTAAAGACCCTGATCTATAGCGGCGCTTTTACCAAAAA
*
10432257 CACCGCTAAA
1 CGCCGCTAAA
10432267 TGTATTAGTC
Statistics
Matches: 193, Mismatches: 24, Indels: 16
0.83 0.10 0.07
Matches are distributed among these distances:
41 6 0.03
42 2 0.01
43 177 0.92
44 2 0.01
45 6 0.03
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.22
Consensus pattern (43 bp):
CGCCGCTAAAGACCCTGATCTATAGCGGCGCTTTTACCAAAAA
Found at i:10432286 original size:86 final size:85
Alignment explanation
Indices: 10432048--10432266 Score: 375
Period size: 86 Copynumber: 2.6 Consensus size: 85
10432038 AAAGCGCCGA
* *
10432048 TAAAGACCCTGATCTATAGCGGCGCTTTTACCAAAAACGCCGCTAAAGACCCTGATCTATAGCGG
1 TAAAGACCTTGATCTATAGCGGCACTTTTACCAAAAACGCCGCTAAAGA-CCTGATCTATAGCGG
*
10432113 CGCTTAGCATAAAAACGCCAC
65 CGCTTAGCACAAAAACGCCAC
10432134 TAAAGACCTTGATCTATAGCGGCACTTTTACCAAAAACGCCGCTAAAGACCCTGATCTATAGCGG
1 TAAAGACCTTGATCTATAGCGGCACTTTTACCAAAAACGCCGCTAAAGA-CCTGATCTATAGCGG
*
10432199 CGCTTAGCGCAAAAACGCCAC
65 CGCTTAGCACAAAAACGCCAC
*
10432220 TAAAGACCTTGATCTATAGCGGCACTTTTACCAAAAACACCGCTAAA
1 TAAAGACCTTGATCTATAGCGGCACTTTTACCAAAAACGCCGCTAAA
10432267 TGTATTAGTC
Statistics
Matches: 128, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
86 128 1.00
ACGTcount: A:0.34, C:0.28, G:0.17, T:0.21
Consensus pattern (85 bp):
TAAAGACCTTGATCTATAGCGGCACTTTTACCAAAAACGCCGCTAAAGACCTGATCTATAGCGGC
GCTTAGCACAAAAACGCCAC
Found at i:10432462 original size:22 final size:22
Alignment explanation
Indices: 10432434--10432477 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
10432424 CTGCGGCGCT
*
10432434 AAAAAGCGCCGCTAAAGGCCTA
1 AAAAAGCGCCGCTAAAAGCCTA
10432456 AAAAAGCGCCGCTAAAAGCCTA
1 AAAAAGCGCCGCTAAAAGCCTA
10432478 TTTTGGTGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.27, G:0.20, T:0.09
Consensus pattern (22 bp):
AAAAAGCGCCGCTAAAAGCCTA
Found at i:10437816 original size:8 final size:8
Alignment explanation
Indices: 10437803--10437831 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
10437793 ACACTTTGCT
10437803 TTATTTTA
1 TTATTTTA
10437811 TTATTTTA
1 TTATTTTA
10437819 TTATTTT-
1 TTATTTTA
10437826 TTATTT
1 TTATTT
10437832 GACACTCTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
7 6 0.29
8 15 0.71
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (8 bp):
TTATTTTA
Found at i:10438287 original size:43 final size:43
Alignment explanation
Indices: 10438235--10438366 Score: 230
Period size: 43 Copynumber: 3.1 Consensus size: 43
10438225 AAAAATAAAT
10438235 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTACTCACAAAC
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTACTCACAAAC
* *
10438278 GCCGCTAAAGACCATGACCTTTAGCGACGCTTTTCTCACAAAC
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTACTCACAAAC
10438321 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTCTAC-CACAAAC
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTT-TACTCACAAAC
10438364 GCC
1 GCC
10438367 ACTATAGGTC
Statistics
Matches: 84, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
43 82 0.98
44 2 0.02
ACGTcount: A:0.27, C:0.34, G:0.18, T:0.20
Consensus pattern (43 bp):
GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTACTCACAAAC
Found at i:10439501 original size:14 final size:14
Alignment explanation
Indices: 10439482--10439510 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
10439472 ATCAAGAAAA
10439482 AAATTATGTATAAG
1 AAATTATGTATAAG
10439496 AAATTATGTATAAG
1 AAATTATGTATAAG
10439510 A
1 A
10439511 CTTGCAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.14, T:0.34
Consensus pattern (14 bp):
AAATTATGTATAAG
Found at i:10442391 original size:55 final size:55
Alignment explanation
Indices: 10442327--10442438 Score: 224
Period size: 55 Copynumber: 2.0 Consensus size: 55
10442317 AAATTTTAGA
10442327 AAAATATATGTTATTTACTCTTTAAATGATAATTAGAAATGTTCACTACCCATAC
1 AAAATATATGTTATTTACTCTTTAAATGATAATTAGAAATGTTCACTACCCATAC
10442382 AAAATATATGTTATTTACTCTTTAAATGATAATTAGAAATGTTCACTACCCATAC
1 AAAATATATGTTATTTACTCTTTAAATGATAATTAGAAATGTTCACTACCCATAC
10442437 AA
1 AA
10442439 CTCACCTAGT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 57 1.00
ACGTcount: A:0.41, C:0.14, G:0.07, T:0.38
Consensus pattern (55 bp):
AAAATATATGTTATTTACTCTTTAAATGATAATTAGAAATGTTCACTACCCATAC
Found at i:10443147 original size:21 final size:21
Alignment explanation
Indices: 10443097--10443158 Score: 65
Period size: 21 Copynumber: 2.9 Consensus size: 21
10443087 CTAACTCAAC
10443097 CCCAAATCTCTAAACCCTAAAT
1 CCCAAA-CTCTAAACCCTAAAT
* *
10443119 CTCTAACTCTAAACCTCT-AAT
1 CCCAAACTCTAAACC-CTAAAT
10443140 CCCAAACTC-ATAACCCTAA
1 CCCAAACTCTA-AACCCTAA
10443159 TTACCCCAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
20 3 0.09
21 24 0.73
22 6 0.18
ACGTcount: A:0.39, C:0.37, G:0.00, T:0.24
Consensus pattern (21 bp):
CCCAAACTCTAAACCCTAAAT
Found at i:10443279 original size:14 final size:15
Alignment explanation
Indices: 10443262--10443317 Score: 80
Period size: 14 Copynumber: 3.9 Consensus size: 15
10443252 AACCCGACCC
*
10443262 TTAACCCCTAAACC-
1 TTAAACCCTAAACCG
*
10443276 TTAAATCCTAAACCG
1 TTAAACCCTAAACCG
10443291 TT-AACCCTAAACCG
1 TTAAACCCTAAACCG
10443305 TTAAACCCTAAAC
1 TTAAACCCTAAAC
10443318 TCATAACCCT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
14 25 0.68
15 12 0.32
ACGTcount: A:0.39, C:0.34, G:0.04, T:0.23
Consensus pattern (15 bp):
TTAAACCCTAAACCG
Found at i:10443308 original size:29 final size:29
Alignment explanation
Indices: 10443262--10443317 Score: 87
Period size: 29 Copynumber: 1.9 Consensus size: 29
10443252 AACCCGACCC
*
10443262 TTAACCCCTAAACCTTAAATCCTAAACCG
1 TTAACCCCTAAACCTTAAACCCTAAACCG
10443291 TTAA-CCCTAAACCGTTAAACCCTAAAC
1 TTAACCCCTAAACC-TTAAACCCTAAAC
10443318 TCATAACCCT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
28 9 0.36
29 16 0.64
ACGTcount: A:0.39, C:0.34, G:0.04, T:0.23
Consensus pattern (29 bp):
TTAACCCCTAAACCTTAAACCCTAAACCG
Found at i:10443324 original size:29 final size:28
Alignment explanation
Indices: 10443267--10443327 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 28
10443257 GACCCTTAAC
* *
10443267 CCCTAAACCTTAAATCCTAAACCGTTAA
1 CCCTAAACCTTAAACCCTAAACCGATAA
10443295 CCCTAAACCGTTAAACCCTAAACTC-ATAA
1 CCCTAAACC-TTAAACCCTAAAC-CGATAA
10443324 CCCT
1 CCCT
10443328 CGGCCCTTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
28 9 0.31
29 19 0.66
30 1 0.03
ACGTcount: A:0.38, C:0.36, G:0.03, T:0.23
Consensus pattern (28 bp):
CCCTAAACCTTAAACCCTAAACCGATAA
Found at i:10444111 original size:124 final size:123
Alignment explanation
Indices: 10443973--10444195 Score: 324
Period size: 123 Copynumber: 1.8 Consensus size: 123
10443963 GGCGCTTTAC
10443973 AAAAAACGCCGCTAAAGGTCTGCGCATTAGAAGCGCTTCATGAAAAAACGCCT-CTAAAGGT-CA
1 AAAAAACGCCGCTAAAGGTCTGCGCATTAGAAGCGCTTCATG-AAAAACG-CTGCTAAAGGTCCA
** *
10444036 GTGCATAAGCGGCGCTTCCTGAAAAACGCCGCTAAAGGTCTGCGCATTAGCGGCGCTTCTT
64 -CACATAAGCGACGCTTCCTGAAAAACGCCGCTAAAGGTCTGCGCATTAGCGGCGCTTCTT
** * *
10444097 AAAAAACGCCGCTAAAGGTCTGCGCATTAGCGGCGCTTCTTGAAAAATGCTGCTAAAGGTCCACA
1 AAAAAACGCCGCTAAAGGTCTGCGCATTAGAAGCGCTTCATGAAAAACGCTGCTAAAGGTCCACA
* *
10444162 CATTAGCGACGCTTCTTGAAAAACGCCGCTAAAG
66 CATAAGCGACGCTTCCTGAAAAACGCCGCTAAAG
10444196 ACCCACAAGG
Statistics
Matches: 88, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
122 2 0.02
123 45 0.51
124 41 0.47
ACGTcount: A:0.31, C:0.26, G:0.23, T:0.20
Consensus pattern (123 bp):
AAAAAACGCCGCTAAAGGTCTGCGCATTAGAAGCGCTTCATGAAAAACGCTGCTAAAGGTCCACA
CATAAGCGACGCTTCCTGAAAAACGCCGCTAAAGGTCTGCGCATTAGCGGCGCTTCTT
Found at i:10444152 original size:82 final size:82
Alignment explanation
Indices: 10443974--10444195 Score: 300
Period size: 82 Copynumber: 2.7 Consensus size: 82
10443964 GCGCTTTACA
** * * *
10443974 AAAAACGCCGCTAAAGGTCTGCGCATTAGAAGCGCTTCATGAAAAAACGCCTCTAAAGGTCAGTG
1 AAAAACGCCGCTAAAGGTCTGCGCATTAGCGGCGCTTC-TTAAAAAACGCCGCTAAAGGTCAGCG
10444039 CATAAGCGGCGCTTCCTG
65 CATAAGCGGCGCTTCCTG
*
10444057 AAAAACGCCGCTAAAGGTCTGCGCATTAGCGGCGCTTCTTAAAAAACGCCGCTAAAGGTCTGCGC
1 AAAAACGCCGCTAAAGGTCTGCGCATTAGCGGCGCTTCTTAAAAAACGCCGCTAAAGGTCAGCGC
* *
10444122 ATTAGCGGCGCTTCTTG
66 ATAAGCGGCGCTTCCTG
* * ** * * *
10444139 AAAAATGCTGCTAAAGGTCCACACATTAGCGACGCTTCTTGAAAAACGCCGCTAAAG
1 AAAAACGCCGCTAAAGGTCTGCGCATTAGCGGCGCTTCTTAAAAAACGCCGCTAAAG
10444196 ACCCACAAGG
Statistics
Matches: 124, Mismatches: 15, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
82 88 0.71
83 36 0.29
ACGTcount: A:0.31, C:0.26, G:0.23, T:0.20
Consensus pattern (82 bp):
AAAAACGCCGCTAAAGGTCTGCGCATTAGCGGCGCTTCTTAAAAAACGCCGCTAAAGGTCAGCGC
ATAAGCGGCGCTTCCTG
Found at i:10444202 original size:41 final size:41
Alignment explanation
Indices: 10443974--10444195 Score: 230
Period size: 41 Copynumber: 5.4 Consensus size: 41
10443964 GCGCTTTACA
** * ** *
10443974 AAAAACGCCGCTAAAGGTCTGCGCATTAGAAGCGCTTCATG
1 AAAAACGCCGCTAAAGGTCCACACATTAGCGGCGCTTCTTG
* ** * *
10444015 AAAAAACGCCTCTAAAGGT-CAGTGCATAAGCGGCGCTTCCTG
1 -AAAAACGCCGCTAAAGGTCCA-CACATTAGCGGCGCTTCTTG
** * *
10444057 AAAAACGCCGCTAAAGGTCTGCGCATTAGCGGCGCTTCTTA
1 AAAAACGCCGCTAAAGGTCCACACATTAGCGGCGCTTCTTG
** *
10444098 AAAAACGCCGCTAAAGGTCTGCGCATTAGCGGCGCTTCTTG
1 AAAAACGCCGCTAAAGGTCCACACATTAGCGGCGCTTCTTG
* * *
10444139 AAAAATGCTGCTAAAGGTCCACACATTAGCGACGCTTCTTG
1 AAAAACGCCGCTAAAGGTCCACACATTAGCGGCGCTTCTTG
10444180 AAAAACGCCGCTAAAG
1 AAAAACGCCGCTAAAG
10444196 ACCCACAAGG
Statistics
Matches: 154, Mismatches: 24, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
41 122 0.79
42 32 0.21
ACGTcount: A:0.31, C:0.26, G:0.23, T:0.20
Consensus pattern (41 bp):
AAAAACGCCGCTAAAGGTCCACACATTAGCGGCGCTTCTTG
Found at i:10455070 original size:18 final size:18
Alignment explanation
Indices: 10455039--10455093 Score: 65
Period size: 18 Copynumber: 3.0 Consensus size: 18
10455029 TGTATTATAA
10455039 TATTAATTAATAAAATAT
1 TATTAATTAATAAAATAT
* *
10455057 TATTACTTATTAAAATAT
1 TATTAATTAATAAAATAT
**
10455075 TATTGTTTAATATAAATAT
1 TATTAATTAATA-AAATAT
10455094 CATTTAAAAG
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
18 25 0.81
19 6 0.19
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (18 bp):
TATTAATTAATAAAATAT
Found at i:10455319 original size:11 final size:11
Alignment explanation
Indices: 10455303--10455329 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
10455293 AGTACTCTAA
10455303 TTTTTTTTTAT
1 TTTTTTTTTAT
10455314 TTTTTTTTTAT
1 TTTTTTTTTAT
10455325 TTTTT
1 TTTTT
10455330 ACAAAATTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.07, C:0.00, G:0.00, T:0.93
Consensus pattern (11 bp):
TTTTTTTTTAT
Found at i:10455419 original size:9 final size:9
Alignment explanation
Indices: 10455405--10455433 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
10455395 TTTCCAATCA
10455405 CAACCAATT
1 CAACCAATT
10455414 CAACCAATT
1 CAACCAATT
10455423 CAACCAATT
1 CAACCAATT
10455432 CA
1 CA
10455434 TTTCACATTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.45, C:0.34, G:0.00, T:0.21
Consensus pattern (9 bp):
CAACCAATT
Found at i:10456053 original size:6 final size:6
Alignment explanation
Indices: 10456028--10456064 Score: 56
Period size: 6 Copynumber: 5.8 Consensus size: 6
10456018 CCAAACACAC
10456028 CAGTAAA CAGTAA TCAGTAA CAGTAA CAGTAA CAGTA
1 CAGT-AA CAGTAA -CAGTAA CAGTAA CAGTAA CAGTA
10456065 TTCAACACAC
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
6 19 0.66
7 10 0.34
ACGTcount: A:0.49, C:0.16, G:0.16, T:0.19
Consensus pattern (6 bp):
CAGTAA
Found at i:10456095 original size:45 final size:44
Alignment explanation
Indices: 10456039--10456193 Score: 193
Period size: 45 Copynumber: 3.4 Consensus size: 44
10456029 AGTAAACAGT
* *
10456039 AATCAGTAACAGTAACAGTAACAGTATTCAACACACAAAGTGTTG
1 AATC-GTAACAGTAACAGTAACAGTATTCGACACACAAAGTGTCG
* * * *
10456084 AACCTGTAACAGTAACGGTAACAGTATTTGACACACAAAGTGCCG
1 AATC-GTAACAGTAACAGTAACAGTATTCGACACACAAAGTGTCG
* *
10456129 AGTCGATAACAGTAACAATAACAGTATTCGACACACAAAGTGTCG
1 AATCG-TAACAGTAACAGTAACAGTATTCGACACACAAAGTGTCG
*
10456174 AATCAGTAATAGTAACAGTA
1 AATC-GTAACAGTAACAGTA
10456194 GTCGGCACAT
Statistics
Matches: 92, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
44 1 0.01
45 90 0.98
46 1 0.01
ACGTcount: A:0.43, C:0.19, G:0.17, T:0.21
Consensus pattern (44 bp):
AATCGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGTCG
Found at i:10456465 original size:39 final size:40
Alignment explanation
Indices: 10456381--10456466 Score: 104
Period size: 40 Copynumber: 2.2 Consensus size: 40
10456371 CACAGTATTG
* * * *
10456381 CAGTAATTTCACAATTCAATGCATTATACATAACAATATT
1 CAGTATTTTCACAATTCAATGCATAATACAAAACAATATC
*
10456421 CAGTATTTTCACAATTCACT-CAGTAAT-CAAAACAATATC
1 CAGTATTTTCACAATTCAATGCA-TAATACAAAACAATATC
10456460 CAGTATT
1 CAGTATT
10456467 CCATAATTCA
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
39 19 0.47
40 21 0.52
ACGTcount: A:0.41, C:0.20, G:0.06, T:0.34
Consensus pattern (40 bp):
CAGTATTTTCACAATTCAATGCATAATACAAAACAATATC
Found at i:10459659 original size:3 final size:3
Alignment explanation
Indices: 10459651--10459691 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
10459641 ACCATAAATA
10459651 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
10459692 TTTAAATGGG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:10461559 original size:45 final size:46
Alignment explanation
Indices: 10461483--10461788 Score: 226
Period size: 46 Copynumber: 6.4 Consensus size: 46
10461473 ACGTATGATT
**
10461483 ACTTATCAC-TTGTC-CCTGATCAGATAAGTGTAGCT-AGGCTACC
1 ACTTATCACTTTGTCACCTGATCAGATAAGTGTAGCTAAAACTACC
* *
10461526 ACTTATCACTTTGTCACTTGATTAGATAAGTGTAGCTAAAACTACC
1 ACTTATCACTTTGTCACCTGATCAGATAAGTGTAGCTAAAACTACC
* *** * * *
10461572 ACTTATCACTTTGTCACCACTTATCACTTG-TTCCTGATCAGATAAGTGTAGCTA-A
1 ACTTATCACTTTGTCA-C-CTGATCA---GATAAGTG-T-AGCTAA----AACTACC
* * * **
10461627 AGCTACCACTTATAACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTACC
1 A-CT--TA----TCACTTTGTCACCTGATCAGATAAGTGTAGCTAAAACTACC
* **
10461680 ACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTACC
1 ACTTATCACTTTGTCACCTGATCAGATAAGTGTAGCTAAAACTACC
* *
10461726 ACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACC
1 ACTTATCACTTTGTCACCTGATCAGATAAGTGTAGCTAAAACTACC
10461772 ACTTATCACTTTGTCAC
1 ACTTATCACTTTGTCAC
10461789 TTGTCACTGA
Statistics
Matches: 214, Mismatches: 26, Indels: 43
0.76 0.09 0.15
Matches are distributed among these distances:
43 9 0.04
44 5 0.02
45 19 0.09
46 124 0.58
47 1 0.00
48 4 0.02
50 4 0.02
51 2 0.01
52 11 0.05
53 1 0.00
55 1 0.00
56 11 0.05
57 2 0.01
58 4 0.02
60 5 0.02
61 1 0.00
62 10 0.05
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (46 bp):
ACTTATCACTTTGTCACCTGATCAGATAAGTGTAGCTAAAACTACC
Found at i:10461624 original size:62 final size:64
Alignment explanation
Indices: 10461523--10461650 Score: 199
Period size: 62 Copynumber: 2.0 Consensus size: 64
10461513 TAGCTAGGCT
* *
10461523 ACCACTTATCACTTTGTCACTTGATTAGATAAGTGTAGCTAAAACTACCACTTATCACTTTGTC
1 ACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAACTACCACTTATAACTTTGTC
*
10461587 ACCACTTATCAC-TTGTTC-C-TGATCAGATAAGTGTAGCTAAAGCTACCACTTATAACTTTGTC
1 ACCACTTATCACTTTG-TCACTTGATCAGATAAGTGTAGCTAAAACTACCACTTATAACTTTGTC
10461649 AC
1 AC
10461651 TTGATCAGAT
Statistics
Matches: 60, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
62 42 0.70
63 4 0.07
64 14 0.23
ACGTcount: A:0.30, C:0.24, G:0.12, T:0.34
Consensus pattern (64 bp):
ACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAACTACCACTTATAACTTTGTC
Found at i:10461671 original size:108 final size:107
Alignment explanation
Indices: 10461483--10461696 Score: 365
Period size: 108 Copynumber: 2.0 Consensus size: 107
10461473 ACGTATGATT
* *
10461483 ACTTATCACTTGTCCCTGATCAGATAAGTGTAGCTAGGCTACCACTTATCACTTTGTCACTTGAT
1 ACTTATCACTTGTCCCTGATCAGATAAGTGTAGCTAAGCTACCACTTATAACTTTGTCACTTGAT
*
10461548 TAGATAAGTGTAGCTAAAACTACCACTTATCACTTTGTCACC
66 CAGATAAGTGTAGCTAAAACTACCACTTATCACTTTGTCACC
*
10461590 ACTTATCACTTGTTCCTGATCAGATAAGTGTAGCTAAAGCTACCACTTATAACTTTGTCACTTGA
1 ACTTATCACTTGTCCCTGATCAGATAAGTGTAGCT-AAGCTACCACTTATAACTTTGTCACTTGA
**
10461655 TCAGATAAGTGTAGCTAAGGCTACCACTTATCACTTTGTCAC
65 TCAGATAAGTGTAGCTAAAACTACCACTTATCACTTTGTCAC
10461697 TTGATCAGAT
Statistics
Matches: 100, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
107 34 0.34
108 66 0.66
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.34
Consensus pattern (107 bp):
ACTTATCACTTGTCCCTGATCAGATAAGTGTAGCTAAGCTACCACTTATAACTTTGTCACTTGAT
CAGATAAGTGTAGCTAAAACTACCACTTATCACTTTGTCACC
Found at i:10461789 original size:46 final size:46
Alignment explanation
Indices: 10461587--10461791 Score: 353
Period size: 46 Copynumber: 4.5 Consensus size: 46
10461577 TCACTTTGTC
10461587 ACCACTTATCAC-TTGTTC-C-TGATCAGATAAGTGTAGCTAAAGCT
1 ACCACTTATCACTTTG-TCACTTGATCAGATAAGTGTAGCTAAAGCT
* *
10461631 ACCACTTATAACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCT
1 ACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCT
*
10461677 ACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCT
1 ACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCT
10461723 ACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCT
1 ACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCT
10461769 ACCACTTATCACTTTGTCACTTG
1 ACCACTTATCACTTTGTCACTTG
10461792 TCACTGATCA
Statistics
Matches: 154, Mismatches: 4, Indels: 4
0.95 0.02 0.02
Matches are distributed among these distances:
44 13 0.08
45 4 0.03
46 137 0.89
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (46 bp):
ACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCT
Found at i:10475390 original size:22 final size:22
Alignment explanation
Indices: 10475365--10475425 Score: 59
Period size: 22 Copynumber: 2.8 Consensus size: 22
10475355 TGTTTTTTGT
* *
10475365 TGTTTTCTTGCTGTTTTTTTAC
1 TGTTTTCTTGCTATTTTCTTAC
* * *
10475387 TGTTTTGTTGTTATTTTCTTAT
1 TGTTTTCTTGCTATTTTCTTAC
**
10475409 TGTTTTCTCACTATTTT
1 TGTTTTCTTGCTATTTT
10475426 GCTACCATTT
Statistics
Matches: 30, Mismatches: 9, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.08, C:0.11, G:0.11, T:0.69
Consensus pattern (22 bp):
TGTTTTCTTGCTATTTTCTTAC
Found at i:10475413 original size:33 final size:32
Alignment explanation
Indices: 10475353--10475414 Score: 88
Period size: 33 Copynumber: 1.9 Consensus size: 32
10475343 TAAAACAAAA
* *
10475353 ACTGTTTTTTGTTGTTTTCTTGCTGTTTTTTT
1 ACTGTTTTTTGTTATTTTCTTACTGTTTTTTT
*
10475385 ACTGTTTTGTTGTTATTTTCTTATTGTTTT
1 ACTGTTTT-TTGTTATTTTCTTACTGTTTT
10475415 CTCACTATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 8 0.31
33 18 0.69
ACGTcount: A:0.06, C:0.08, G:0.15, T:0.71
Consensus pattern (32 bp):
ACTGTTTTTTGTTATTTTCTTACTGTTTTTTT
Found at i:10475426 original size:33 final size:33
Alignment explanation
Indices: 10475357--10475426 Score: 79
Period size: 33 Copynumber: 2.2 Consensus size: 33
10475347 ACAAAAACTG
* * * * *
10475357 TTTT-TTGTTGTTTTCTTGCTGTTTTTTTACTG
1 TTTTGTTGTTATTTTCTTACTGTTTTCTCACTA
*
10475389 TTTTGTTGTTATTTTCTTATTGTTTTCTCACTA
1 TTTTGTTGTTATTTTCTTACTGTTTTCTCACTA
10475422 TTTTG
1 TTTTG
10475427 CTACCATTTT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
32 4 0.13
33 27 0.87
ACGTcount: A:0.07, C:0.10, G:0.13, T:0.70
Consensus pattern (33 bp):
TTTTGTTGTTATTTTCTTACTGTTTTCTCACTA
Found at i:10476552 original size:19 final size:19
Alignment explanation
Indices: 10476528--10476621 Score: 116
Period size: 19 Copynumber: 4.8 Consensus size: 19
10476518 AATTTTTGAG
10476528 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
**
10476547 GATATGCAATCCAAGATAT
1 GATATGCAATCTTAGATAT
*
10476566 GATATATGCAATCTTAGAGAT
1 G--ATATGCAATCTTAGATAT
** *
10476587 GATATATAATCTTGGATAT
1 GATATGCAATCTTAGATAT
10476606 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
10476622 ATATATGATT
Statistics
Matches: 61, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
19 45 0.74
21 16 0.26
ACGTcount: A:0.38, C:0.11, G:0.17, T:0.34
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:10476573 original size:40 final size:37
Alignment explanation
Indices: 10476528--10476628 Score: 114
Period size: 40 Copynumber: 2.6 Consensus size: 37
10476518 AATTTTTGAG
10476528 GATATGCAATCTTAGATATGATATGCAATCCAAGATAT
1 GATATGCAATCTTAGA-ATGATATGCAATCCAAGATAT
** ***
10476566 GATATATGCAATCTTAGAGATGATATATAATCTTGGATAT
1 G--ATATGCAATCTTAGA-ATGATATGCAATCCAAGATAT
10476606 GATATGCAATCTTAGAAT-ATATG
1 GATATGCAATCTTAGAATGATATG
10476629 ATTTTGTAAT
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
36 4 0.07
37 2 0.04
38 16 0.30
40 32 0.59
ACGTcount: A:0.39, C:0.10, G:0.17, T:0.35
Consensus pattern (37 bp):
GATATGCAATCTTAGAATGATATGCAATCCAAGATAT
Found at i:10478066 original size:98 final size:98
Alignment explanation
Indices: 10477932--10478126 Score: 345
Period size: 98 Copynumber: 2.0 Consensus size: 98
10477922 TTAAAAATAA
* * *
10477932 TAAATGAAATATTCCGAGTTTGGGATTTTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
*
10477997 TTAAATCTTGGATAACTGGATGTTTTTTTAAAG
66 TTAAATCTTGGATAACTGGATGTTCTTTTAAAG
*
10478030 TAAAGGAAATATTCCGAGTTTGGGATTCTAGAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
10478095 TTAAATCTTGGATAACTGGATGTTCTTTTAAA
66 TTAAATCTTGGATAACTGGATGTTCTTTTAAA
10478127 ATTTTATTGT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
98 92 1.00
ACGTcount: A:0.28, C:0.11, G:0.23, T:0.38
Consensus pattern (98 bp):
TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
TTAAATCTTGGATAACTGGATGTTCTTTTAAAG
Found at i:10482243 original size:20 final size:21
Alignment explanation
Indices: 10482213--10482251 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
10482203 TATTTCAAAA
10482213 AAAAAGAGAAAAAAGAAAAGG
1 AAAAAGAGAAAAAAGAAAAGG
10482234 AAAAAG-GAAAAAAGAAAA
1 AAAAAGAGAAAAAAGAAAA
10482252 AGTAAAAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (21 bp):
AAAAAGAGAAAAAAGAAAAGG
Found at i:10482258 original size:20 final size:20
Alignment explanation
Indices: 10482209--10482264 Score: 69
Period size: 20 Copynumber: 2.8 Consensus size: 20
10482199 AAAATATTTC
10482209 AAAA-AAAAAGAGAAAAAAGA
1 AAAAGAAAAAG-GAAAAAAGA
*
10482229 AAAGGAAAAAGGAAAAAAGA
1 AAAAGAAAAAGGAAAAAAGA
* *
10482249 AAAAGTAAAAGTAAAA
1 AAAAGAAAAAGGAAAA
10482265 GGAGAGGCCA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
20 25 0.81
21 6 0.19
ACGTcount: A:0.79, C:0.00, G:0.18, T:0.04
Consensus pattern (20 bp):
AAAAGAAAAAGGAAAAAAGA
Found at i:10483654 original size:44 final size:44
Alignment explanation
Indices: 10483579--10483787 Score: 113
Period size: 44 Copynumber: 4.8 Consensus size: 44
10483569 CCAAGCCTTG
* * * * * * *
10483579 TCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATAGTAGATCTTA
* *
10483623 TCTCTCTAAGCAGTAGTGGAGCAGATCGAAGACAGT-GAATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATAGTAG-ATCTTA
* * ** * ** *
10483667 TCTTTCC-AAG-A-TAGTGGGAAGCAAATTTAAGCTACCA-AGTCTTG
1 TC-TCCCTAAGCAGTAGT-GG-AGCAGATCGAAGATAGTAGA-TCTTA
* * * * * * * *
10483711 TCTCCCTGAGCAGCAGCGGAGAAGGTTGAAAATTGTAGATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATAGTAGATCTTA
10483755 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAT
1 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAT
10483788 GGCGAATCTT
Statistics
Matches: 115, Mismatches: 40, Indels: 20
0.66 0.23 0.11
Matches are distributed among these distances:
42 4 0.03
43 8 0.07
44 95 0.83
45 6 0.05
46 2 0.02
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (44 bp):
TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATAGTAGATCTTA
Found at i:10484126 original size:132 final size:132
Alignment explanation
Indices: 10483473--10484094 Score: 969
Period size: 132 Copynumber: 4.7 Consensus size: 132
10483463 AACAGATCAG
* * * **
10483473 TGAAAATTGTAGATCTTATTTCCCTAAACAGTAATGGAGCAGATCGAAGACGGTGAATCTTATCT
1 TGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACGAATCTTATCT
10483538 TTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAG
66 TTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAG
10483603 GT
131 GT
* * *
10483605 TGAAGATTGTAGATCTTATCTCTCTAAGCAGTAGTGGAGCAGATCGAAGAC-AGTGAATCTTATC
1 TGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGA-CGAATCTTATC
* * *
10483669 TTTCCAAGATAGTGGGAAGCAAATTTAAGCTACCAAGTCTTGTCTCCCTGAGCAGCAGCGGAGAA
65 TTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAA
10483734 GGT
130 GGT
* * *
10483737 TGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATAT
1 TGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACGAATCTTATCT
10483802 TTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAG
66 TTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAG
10483867 GT
131 GT
* * *
10483869 TGAAAATTGTAGATCTTATCTCCCTAAGCAATAGTGGAACAGATCGAAGACGACAAATCTTATCT
1 TGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACGAATCTTATCT
* * *
10483934 TTCCAAGATAGTGGAAAGCAGATTTAAGCCACCAAGCCTTGTTTCCCTGAGCAGCAGTGGA-ATA
66 TTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGA-A
10483998 GGT
130 GGT
* * * * *
10484001 TGAAGATTGTAGATGTTATCTCCCTAAGCAGTAGTGAAGCAGATCGAAGACGACAAATCATATCT
1 TGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACGAATCTTATCT
* *
10484066 TTCTAAGATAGTGGGAAGCAGATTAAAGC
66 TTCCAAGATAGTGGGAAGCAGATTTAAGC
10484095 TGACAATCCT
Statistics
Matches: 451, Mismatches: 36, Indels: 6
0.91 0.07 0.01
Matches are distributed among these distances:
131 1 0.00
132 450 1.00
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (132 bp):
TGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACGAATCTTATCT
TTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAG
GT
Found at i:10484134 original size:44 final size:44
Alignment explanation
Indices: 10484082--10484957 Score: 422
Period size: 44 Copynumber: 20.2 Consensus size: 44
10484072 GATAGTGGGA
* *
10484082 AGCAGATTAAAGCTGACAATCCTATCTCCCTGAAGTTGCAGTGG
1 AGCAGATTAAAGATGACAATCTTATCTCCCTGAAGTTGCAGTGG
* * * * * *
10484126 AGCGGATTAAA-ATTACAGATCTTATCTCTCTAAAGTTACAG-AG
1 AGCAGATTAAAGATGACA-ATCTTATCTCCCTGAAGTTGCAGTGG
* * * *
10484169 AGCAGA-T--CGCAT--CTAGTCTTATCTCCATGAAGTTGCGGTGG
1 AGCAGATTAAAG-ATGAC-AATCTTATCTCCCTGAAGTTGCAGTGG
* * *
10484210 A-CAAGACT-AAG-TAAGCAAGTCTTATC-CTCCTGAAGTTACAGT-G
1 AGC-AGATTAAAGATGA-CAA-TCTTATCTC-CCTGAAGTTGCAGTGG
* * * *
10484253 AGGCAGACTGAAGATGATAAATCTTATCTTCCTGAAGTTGCAGTGG
1 A-GCAGATTAAAGATGA-CAATCTTATCTCCCTGAAGTTGCAGTGG
** *
10484299 AGCAGATTAAAGCCGACAATCCTATCTCCCTGAAGTTGCAGTGG
1 AGCAGATTAAAGATGACAATCTTATCTCCCTGAAGTTGCAGTGG
* * * * *
10484343 AGCGGATTAAA-ATTACAGATCTTATCTCTCTGAAGTTACAG-AG
1 AGCAGATTAAAGATGACA-ATCTTATCTCCCTGAAGTTGCAGTGG
* * **
10484386 AGCAGA-T--CGCAT--CTAGTCTTATCTCCCTGAAGTTGTGGTGG
1 AGCAGATTAAAG-ATGAC-AATCTTATCTCCCTGAAGTTGCAGTGG
* * *
10484427 A-CAAGACT-AAG-TAAGCAAGTCTTAT-TCTCCTGAAGTTACAGT-G
1 AGC-AGATTAAAGATGA-CAA-TCTTATCTC-CCTGAAGTTGCAGTGG
* * * *
10484470 AGGCAGACTGAAGATGGCAAATCTTATCTTCCTGAAGTTGCAGTGG
1 A-GCAGATTAAAGATGAC-AATCTTATCTCCCTGAAGTTGCAGTGG
** * * * *
10484516 AGCAGATTAAAGCCGATAATCCTATCTCCCTAAAGTTGCAGTAG
1 AGCAGATTAAAGATGACAATCTTATCTCCCTGAAGTTGCAGTGG
* * * *
10484560 AGCAGATTAAA-ATCACAGATCTTATCTCTCTGAAGTTACAG-AG
1 AGCAGATTAAAGATGACA-ATCTTATCTCCCTGAAGTTGCAGTGG
* * *
10484603 AGCAGA-T--CGCAT--CTAGTCTTATCTCCCTGAAGTTGCGGTGG
1 AGCAGATTAAAG-ATGAC-AATCTTATCTCCCTGAAGTTGCAGTGG
** * * *
10484644 ATAAGACT-AAG-TAAGCAAGTCTTATC-CTCCTGAAGTTACAGT-G
1 AGCAGATTAAAGATGA-CAA-TCTTATCTC-CCTGAAGTTGCAGTGG
* * * *
10484687 AGGCAGACTGAAGATGGCAAATCTTATCTCCCTAAAGTTGCAGTGG
1 A-GCAGATTAAAGATGAC-AATCTTATCTCCCTGAAGTTGCAGTGG
* * *
10484733 AGCAGATTAAAG-TCGATAATCCTATCTCCCTGAAGTTGCAGTAG
1 AGCAGATTAAAGAT-GACAATCTTATCTCCCTGAAGTTGCAGTGG
* * * * *
10484777 AGCGGATTAAA-ATCACAGATCTTATCTCTCTGAAGTTACAG-AG
1 AGCAGATTAAAGATGACA-ATCTTATCTCCCTGAAGTTGCAGTGG
* *
10484820 AGCAGA-T--CGCAT--CTAGTCTTATCTCCCTGAAGTTGCAGTGG
1 AGCAGATTAAAG-ATGAC-AATCTTATCTCCCTGAAGTTGCAGTGG
* * * *
10484861 AGCAGACTAAGGAAG-CAAGTCTTATC-CTCCTGAAGTTTCAGT-G
1 AGCAGATTAAAGATGACAA-TCTTATCTC-CCTGAAGTTGCAGTGG
* * *
10484904 AGGCAGACTGAAGATGGCAAGTCTTATCTCCCTGAAGTTGCAGTGG
1 A-GCAGATTAAAGATGACAA-TCTTATCTCCCTGAAGTTGCAGTGG
*
10484950 AGTAGATT
1 AGCAGATT
10484958 GAAGCACTAA
Statistics
Matches: 634, Mismatches: 124, Indels: 147
0.70 0.14 0.16
Matches are distributed among these distances:
40 80 0.13
41 29 0.05
42 16 0.03
43 59 0.09
44 298 0.47
45 131 0.21
46 21 0.03
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.27
Consensus pattern (44 bp):
AGCAGATTAAAGATGACAATCTTATCTCCCTGAAGTTGCAGTGG
Found at i:10484347 original size:217 final size:217
Alignment explanation
Indices: 10484082--10484962 Score: 1512
Period size: 217 Copynumber: 4.1 Consensus size: 217
10484072 GATAGTGGGA
* * *
10484082 AGCAGATTAAAGCTGACAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATTACAGATC
1 AGCAGATTAAAGCCGACAATCCTATCTCCCTGAAGTTGCAGTAGAGCGGATTAAAATCACAGATC
* *
10484147 TTATCTCTCTAAAGTTACAGAGAGCAGATCGCATCTAGTCTTATCTCCATGAAGTTGCGGTGGAC
66 TTATCTCTCTGAAGTTACAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCGGTGGAC
**
10484212 AAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTACAGTGAGGCAGACTGAAGATGATAAATCT
131 AAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTACAGTGAGGCAGACTGAAGATGGCAAATCT
*
10484277 TATCTTCCTGAAGTTGCAGTGG
196 TATCTCCCTGAAGTTGCAGTGG
* *
10484299 AGCAGATTAAAGCCGACAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATTACAGATC
1 AGCAGATTAAAGCCGACAATCCTATCTCCCTGAAGTTGCAGTAGAGCGGATTAAAATCACAGATC
*
10484364 TTATCTCTCTGAAGTTACAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGTGGTGGAC
66 TTATCTCTCTGAAGTTACAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCGGTGGAC
*
10484429 AAGACTAAGTAAGCAAGTCTTATTCTCCTGAAGTTACAGTGAGGCAGACTGAAGATGGCAAATCT
131 AAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTACAGTGAGGCAGACTGAAGATGGCAAATCT
*
10484494 TATCTTCCTGAAGTTGCAGTGG
196 TATCTCCCTGAAGTTGCAGTGG
* * *
10484516 AGCAGATTAAAGCCGATAATCCTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAATCACAGATC
1 AGCAGATTAAAGCCGACAATCCTATCTCCCTGAAGTTGCAGTAGAGCGGATTAAAATCACAGATC
*
10484581 TTATCTCTCTGAAGTTACAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCGGTGGAT
66 TTATCTCTCTGAAGTTACAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCGGTGGAC
10484646 AAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTACAGTGAGGCAGACTGAAGATGGCAAATCT
131 AAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTACAGTGAGGCAGACTGAAGATGGCAAATCT
*
10484711 TATCTCCCTAAAGTTGCAGTGG
196 TATCTCCCTGAAGTTGCAGTGG
* *
10484733 AGCAGATTAAAGTCGATAATCCTATCTCCCTGAAGTTGCAGTAGAGCGGATTAAAATCACAGATC
1 AGCAGATTAAAGCCGACAATCCTATCTCCCTGAAGTTGCAGTAGAGCGGATTAAAATCACAGATC
*
10484798 TTATCTCTCTGAAGTTACAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAG
66 TTATCTCTCTGAAGTTACAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCGGTGGA-
* * *
10484863 C-AGACTAAGGAAGCAAGTCTTATCCTCCTGAAGTTTCAGTGAGGCAGACTGAAGATGGCAAGTC
130 CAAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTACAGTGAGGCAGACTGAAGATGGCAAATC
10484927 TTATCTCCCTGAAGTTGCAGTGG
195 TTATCTCCCTGAAGTTGCAGTGG
* *
10484950 AGTAGATTGAAGC
1 AGCAGATTAAAGC
10484963 ACTAATTCCT
Statistics
Matches: 634, Mismatches: 29, Indels: 2
0.95 0.04 0.00
Matches are distributed among these distances:
217 634 1.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (217 bp):
AGCAGATTAAAGCCGACAATCCTATCTCCCTGAAGTTGCAGTAGAGCGGATTAAAATCACAGATC
TTATCTCTCTGAAGTTACAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCGGTGGAC
AAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTACAGTGAGGCAGACTGAAGATGGCAAATCT
TATCTCCCTGAAGTTGCAGTGG
Found at i:10484623 original size:173 final size:174
Alignment explanation
Indices: 10484444--10484779 Score: 384
Period size: 173 Copynumber: 1.9 Consensus size: 174
10484434 TAAGTAAGCA
* * *
10484444 AGTCTTAT-TCTCCTGAAGTTACAGT-GAGGCAGACTGAAG-ATGGCAAATCTTATCTTCCTGAA
1 AGTCTTATCTC-CCTGAAGTTACAGTGGA-GAAGACT-AAGTA-AGCAAATCTTATCCTCCTGAA
* *
10484506 GTTGCAGTG-GAGCAGA-TTAA-A-GCCGATAATCCTATCTCCCTAAAGTTGCAGTAGAGCAGAT
62 GTTACAGTGAG-GCAGACTGAAGATGCC-A-AATCCTATCTCCCTAAAGTTGCAGTAGAGCAGAT
* *
10484567 TAAAATC-ACAGATCTTATCTCTCTGAAGTTACAG-AGAGCAGATCGCATCT
124 TAAAATCGACA-ATCCTATCTCCCTGAAGTTACAGTAGAGCAGATCGCATCT
* * * *
10484617 AGTCTTATCTCCCTGAAGTTGCGGTGGATAAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTA
1 AGTCTTATCTCCCTGAAGTTACAGTGGAGAAGACTAAGTAAGCAAATCTTATCCTCCTGAAGTTA
* * * *
10484682 CAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGTC
66 CAGTGAGGCAGACTGAAGATGCCAAATCCTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAATC
* *
10484747 GATAATCCTATCTCCCTGAAGTTGCAGTAGAGC
131 GACAATCCTATCTCCCTGAAGTTACAGTAGAGC
10484780 GGATTAAAAT
Statistics
Matches: 137, Mismatches: 17, Indels: 17
0.80 0.10 0.10
Matches are distributed among these distances:
172 34 0.25
173 88 0.64
174 13 0.09
175 2 0.01
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.27
Consensus pattern (174 bp):
AGTCTTATCTCCCTGAAGTTACAGTGGAGAAGACTAAGTAAGCAAATCTTATCCTCCTGAAGTTA
CAGTGAGGCAGACTGAAGATGCCAAATCCTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAATC
GACAATCCTATCTCCCTGAAGTTACAGTAGAGCAGATCGCATCT
Found at i:10485189 original size:19 final size:19
Alignment explanation
Indices: 10485165--10485237 Score: 110
Period size: 19 Copynumber: 3.8 Consensus size: 19
10485155 AATTTTTGAG
10485165 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
10485184 GATATGCAATCTTAGAGAT
1 GATATGCAATCTTAGATAT
** *
10485203 GATATATAATCTTGGATAT
1 GATATGCAATCTTAGATAT
10485222 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
10485238 ATATATGATT
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 46 1.00
ACGTcount: A:0.37, C:0.10, G:0.18, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:10486664 original size:98 final size:98
Alignment explanation
Indices: 10486544--10486738 Score: 363
Period size: 98 Copynumber: 2.0 Consensus size: 98
10486534 TTAAAAATAA
* *
10486544 TAAAGGAAATATTCCGAGTTTGGGATTTTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
10486609 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
*
10486642 TAAAGGAAATATTCCGAGTTTGGGATTCTAGAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
10486707 TTAAATCTTGGATAAGTGGATGTTCTTTTAAA
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAA
10486739 ATTTTATTGT
Statistics
Matches: 94, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
98 94 1.00
ACGTcount: A:0.28, C:0.10, G:0.25, T:0.37
Consensus pattern (98 bp):
TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
Found at i:10491209 original size:34 final size:31
Alignment explanation
Indices: 10491133--10491194 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
10491123 TTCATCTCTA
* **
10491133 ATTTTGCAATAAACCGGAACTTTTAATTTAT
1 ATTTTTCAATAAACAAGAACTTTTAATTTAT
10491164 ATTTTTCAATAAACAAGAACTTTTAATTTAT
1 ATTTTTCAATAAACAAGAACTTTTAATTTAT
10491195 TTTATTTCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.39, C:0.11, G:0.06, T:0.44
Consensus pattern (31 bp):
ATTTTTCAATAAACAAGAACTTTTAATTTAT
Found at i:10496195 original size:96 final size:96
Alignment explanation
Indices: 10496031--10496205 Score: 224
Period size: 96 Copynumber: 1.8 Consensus size: 96
10496021 ACTGCAGCTT
* * *
10496031 CAGAGACAGCGGCCTCAGCAGAACCATTAGCTAAACCATCTCCACTGCAATCACCATTAACAACT
1 CAGAGACAGCGGCCTCAGCACAACCATTAGCTAAACCATCTCCACCGCAATCACCATCAACAACT
10496096 ACAGCCACTTCAGATTCCTCAACATTGGCTC
66 ACAGCCACTTCAGATTCCTCAACATTGGCTC
* * * * * * * * *
10496127 CAGAGACAGTGGCCTTAGCACTATCATTAGGTAAACCATCTCCGCCGTAATCACCATCAGCAGCT
1 CAGAGACAGCGGCCTCAGCACAACCATTAGCTAAACCATCTCCACCGCAATCACCATCAACAACT
* *
10496192 ACAGTCATTTCAGA
66 ACAGCCACTTCAGA
10496206 GCCCTCTTTC
Statistics
Matches: 65, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
96 65 1.00
ACGTcount: A:0.31, C:0.32, G:0.15, T:0.21
Consensus pattern (96 bp):
CAGAGACAGCGGCCTCAGCACAACCATTAGCTAAACCATCTCCACCGCAATCACCATCAACAACT
ACAGCCACTTCAGATTCCTCAACATTGGCTC
Found at i:10496331 original size:120 final size:120
Alignment explanation
Indices: 10496116--10497066 Score: 1044
Period size: 120 Copynumber: 7.9 Consensus size: 120
10496106 CAGATTCCTC
* * * * * *
10496116 AACATTGGCTCCAGAGACAGTGGCCTTAGCACTATCATTAGGTAAACCATCTCCGCCGTAATCAC
1 AACATTAGCTTCAGAGACAGTGGCCTTAGCACTATCATTAGCTAAACCATCTCCACTGCAATCAC
* * * * **
10496181 CATCAGCAGCTACAGTCATTTCAGAGCCCTCTTTCTCTTCTGACGAGGAATCAAT
66 CATCATCAGCTACAGCCATTTCAGAGCCCTCATTCTCTTTTGACCTGGAATCAAT
* * *
10496236 AACATTAGTTTCAGAGACAGTGGCGTTTGCACTATCATTAGCTAAACCATCTCCACTGCAATCAC
1 AACATTAGCTTCAGAGACAGTGGCCTTAGCACTATCATTAGCTAAACCATCTCCACTGCAATCAC
* * * * * * *
10496301 CATCAGCAGCTACGGCCACTCCAGAACCCTCTTTCTCTTCTGACCTGGAATCAAT
66 CATCATCAGCTACAGCCATTTCAGAGCCCTCATTCTCTTTTGACCTGGAATCAAT
* * * * * * *
10496356 AACATTGGCTTCAGAGACAGTGGCCTCAGCACTATCATTAGATAGACCATTTGCATTGCAATCAC
1 AACATTAGCTTCAGAGACAGTGGCCTTAGCACTATCATTAGCTAAACCATCTCCACTGCAATCAC
* *
10496421 CACCATCAGCTACAGCCATTTCAGAGCCCGCATTCTCTTTTGACCTGGAATCAAT
66 CATCATCAGCTACAGCCATTTCAGAGCCCTCATTCTCTTTTGACCTGGAATCAAT
** * * * ** *
10496476 AACGCTGGCTTCAGAGACTGTGGTCTTAGCACTATCATTAGCTAAACTGTCTCCATTGCAATCAC
1 AACATTAGCTTCAGAGACAGTGGCCTTAGCACTATCATTAGCTAAACCATCTCCACTGCAATCAC
** * **
10496541 CATCATCAGCTACAGTTATTTCGGAGCCCTCATTCTCTTTTGACCTGGAATTGAT
66 CATCATCAGCTACAGCCATTTCAGAGCCCTCATTCTCTTTTGACCTGGAATCAAT
** * * * *
10496596 AACGCTGGCTTCACAGACAGTGGCCTTAGCATTATCATTAGCTAAACCATCTCCATTGCAATCAC
1 AACATTAGCTTCAGAGACAGTGGCCTTAGCACTATCATTAGCTAAACCATCTCCACTGCAATCAC
* * * * *
10496661 CATCATCGGCTACAGCCATTTCAGAGTCCTCATTATCTTTTGACCTGAAATCAAG
66 CATCATCAGCTACAGCCATTTCAGAGCCCTCATTCTCTTTTGACCTGGAATCAAT
* * * * * * * * * * *
10496716 AACAGTATCTTCAGAAACAGTTGCCTCAACACTGTCATT-GACAAAACCATCTCCATTGAAATCT
1 AACATTAGCTTCAGAGACAGTGGCCTTAGCACTATCATTAG-CTAAACCATCTCCACTGCAATCA
* * * * *
10496780 CCATCACCAGCTACAGCCATTTCAGAGCCCCCGTTCTCTTTTGACCTGAAAT-AGAG
65 CCATCATCAGCTACAGCCATTTCAGAGCCCTCATTCTCTTTTGACCTGGAATCA-AT
* * * * * *
10496836 CACATTAGCTTCAGAAACAGGGGCCTCAACACTATCATTAACTAAACCATCTCCACTGCAATCAC
1 AACATTAGCTTCAGAGACAGTGGCCTTAGCACTATCATTAGCTAAACCATCTCCACTGCAATCAC
* * * * * *
10496901 CATCATCAGCTACTGTCATTTCGGAGCCCTCACTCTCTTTTGACCTGAAATCAAG
66 CATCATCAGCTACAGCCATTTCAGAGCCCTCATTCTCTTTTGACCTGGAATCAAT
* * * * *
10496956 AACATCAGCTTCAGAAACAG-GGGCTTCAACACTATCATTAACTAAACCATCTCCACTGCAATCA
1 AACATTAGCTTCAGAGACAGTGGCCTT-AGCACTATCATTAGCTAAACCATCTCCACTGCAATCA
* *
10497020 CCATCATCAGCTACAGCTATTTCGGAGCCCTCATTCTCTTTTGACCT
65 CCATCATCAGCTACAGCCATTTCAGAGCCCTCATTCTCTTTTGACCT
10497067 AAAATCAAGG
Statistics
Matches: 711, Mismatches: 115, Indels: 10
0.85 0.14 0.01
Matches are distributed among these distances:
119 6 0.01
120 704 0.99
121 1 0.00
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.27
Consensus pattern (120 bp):
AACATTAGCTTCAGAGACAGTGGCCTTAGCACTATCATTAGCTAAACCATCTCCACTGCAATCAC
CATCATCAGCTACAGCCATTTCAGAGCCCTCATTCTCTTTTGACCTGGAATCAAT
Found at i:10501141 original size:18 final size:18
Alignment explanation
Indices: 10501118--10501160 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
10501108 GAATAGGTAT
10501118 TTAATTAAATAAATTT-AA
1 TTAATTAAA-AAATTTAAA
*
10501136 TTAATTAAAAATTTTAAA
1 TTAATTAAAAAATTTAAA
10501154 TTAATTA
1 TTAATTA
10501161 CACTTTGAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 5 0.22
18 18 0.78
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
TTAATTAAAAAATTTAAA
Found at i:10506305 original size:489 final size:489
Alignment explanation
Indices: 10505387--10506366 Score: 1681
Period size: 489 Copynumber: 2.0 Consensus size: 489
10505377 TTAGGACTAT
* *
10505387 CGCTTGGCATATGTTGTTGATTTAACAGGTTAGTTTTAGAGAATCGTTATTAATTTGAGTGTGTT
1 CGCTTGGCATATGTTGTTGATTTAACAGGTTAGTTTTAGAGAATCATTATTAATTTGAGCGTGTT
* **
10505452 AAATGTCGATTTTAGATTCTGATATTCACATTGTTGGTTTCGCATAAGAAAATATCTAGGTGTGT
66 AAATGTCGATTTTAAATTCTGATATTCACATTGTTGGTTTCGCATAAGAAAATATCTAGGCATGT
* * * *
10505517 GACTCGATCTCATAAAAACAATAAACATCAAAAAGCCAAAAACCCCATTGTCGATGTCACATGGT
131 GACTCGATCTCATAAAAACAATAAACAGCAAAAAGCCAAAAAACCCACTGTCGATGTCACATAGT
*
10505582 CGTGTGCCAAACTATATGGACCACACGGTTTGGGTTGTTTGGGGCATGTGTAAGCTGTGTGGGTC
196 CGTGTGCCAAACTATATGGACCACACGGTCTGGGTTGTTTGGGGCATGTGTAAGCTGTGTGGGTC
* *
10505647 ACATGCGCTAAGCTAGTTGGGTCGTGTGGGCCCATTTTCTGGAAATTCACATAGGGTCATTTTGA
261 ACATGCGCTAAGCTAGCTGGGTCATGTGGGCCCATTTTCTGGAAATTCACATAGGGTCATTTTGA
*
10505712 TCTACGATTCATATTTACACTATCCGTAGGGTCCATATTGCTTAAATGAGGCTTGAAAACATGAT
326 TCTACGATTCATATTTAAACTATCCGTAGGGTCCATATTGCTTAAATGAGGCTTGAAAACATGAT
* *
10505777 ATCTGTTAATATGCGTCTGTAGGTGATATGATTAAGGTAGAGGTGATCATATGTCGAGCTGGGTC
391 ATCTGTTAATATGCGTCTATAGGTGATATGATTAAGGTAGAGGTGATCATAGGTCGAGCTGGGTC
*
10505842 GGGTTCAGGTCAGACCCAGATAAAATTTTAGGCC
456 AGGTTCAGGTCAGACCCAGATAAAATTTTAGGCC
*
10505876 CGCTTGGCATATGTTGTTGATTTAACAGGTTAGTTTTAGAGAATCATTATTGATTTGAGCGTGTT
1 CGCTTGGCATATGTTGTTGATTTAACAGGTTAGTTTTAGAGAATCATTATTAATTTGAGCGTGTT
** *
10505941 AAATGTCGATTTTAAATTCTGATATTCATGTTGTTGGTTTCGCATCAGAAAATATCTAGGCATGT
66 AAATGTCGATTTTAAATTCTGATATTCACATTGTTGGTTTCGCATAAGAAAATATCTAGGCATGT
*
10506006 GACTCGATCTCGTAAAAACAATAAACAGCAAAAAGCCAAAAAACCCACTGTCGATGTCACATAGT
131 GACTCGATCTCATAAAAACAATAAACAGCAAAAAGCCAAAAAACCCACTGTCGATGTCACATAGT
*
10506071 CGTGTGCCAAACTATATGGACCACACGGTCTGGGTTGTTTGGGGCATGTGTAGGCTGTGTGGGTC
196 CGTGTGCCAAACTATATGGACCACACGGTCTGGGTTGTTTGGGGCATGTGTAAGCTGTGTGGGTC
* *
10506136 ACATGCGCTAAGCTAGCTGGGTCATGTGGGCCCATTTTTTGGAAATTCACGTAGGGTCATTTTGA
261 ACATGCGCTAAGCTAGCTGGGTCATGTGGGCCCATTTTCTGGAAATTCACATAGGGTCATTTTGA
* * * *
10506201 TCTGCGATTCATATTTAAACTATTCGTAGGGTCCATATTGCTTAAATGAGTCTTGAAAATATGAT
326 TCTACGATTCATATTTAAACTATCCGTAGGGTCCATATTGCTTAAATGAGGCTTGAAAACATGAT
* * *
10506266 ATCTGTTAATATGCGTCTATAGGTGATATTATTAAGGTAGAGGTGATCATGGGTCGAGCTGGGTT
391 ATCTGTTAATATGCGTCTATAGGTGATATGATTAAGGTAGAGGTGATCATAGGTCGAGCTGGGTC
10506331 AGGTTCAGGTCAGACCCAGATAAAATTTTAGGCC
456 AGGTTCAGGTCAGACCCAGATAAAATTTTAGGCC
10506365 CG
1 CG
10506367 TTTTCTAGGT
Statistics
Matches: 460, Mismatches: 31, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
489 460 1.00
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33
Consensus pattern (489 bp):
CGCTTGGCATATGTTGTTGATTTAACAGGTTAGTTTTAGAGAATCATTATTAATTTGAGCGTGTT
AAATGTCGATTTTAAATTCTGATATTCACATTGTTGGTTTCGCATAAGAAAATATCTAGGCATGT
GACTCGATCTCATAAAAACAATAAACAGCAAAAAGCCAAAAAACCCACTGTCGATGTCACATAGT
CGTGTGCCAAACTATATGGACCACACGGTCTGGGTTGTTTGGGGCATGTGTAAGCTGTGTGGGTC
ACATGCGCTAAGCTAGCTGGGTCATGTGGGCCCATTTTCTGGAAATTCACATAGGGTCATTTTGA
TCTACGATTCATATTTAAACTATCCGTAGGGTCCATATTGCTTAAATGAGGCTTGAAAACATGAT
ATCTGTTAATATGCGTCTATAGGTGATATGATTAAGGTAGAGGTGATCATAGGTCGAGCTGGGTC
AGGTTCAGGTCAGACCCAGATAAAATTTTAGGCC
Found at i:10510278 original size:29 final size:29
Alignment explanation
Indices: 10510246--10510324 Score: 79
Period size: 30 Copynumber: 2.7 Consensus size: 29
10510236 AAATTTTAAA
* *
10510246 TTAATAATGATAAAAATATACTTT-AATTT
1 TTAAAAATAATAAAAATATA-TTTAAATTT
* *
10510275 TTAAAAATAATAAATATTTGATTTAAATTT
1 TTAAAAATAATAAAAATAT-ATTTAAATTT
* *
10510305 TTAAAAATTATAAAGATATA
1 TTAAAAATAATAAAAATATA
10510325 ACATATTAAA
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
29 19 0.46
30 22 0.54
ACGTcount: A:0.52, C:0.01, G:0.04, T:0.43
Consensus pattern (29 bp):
TTAAAAATAATAAAAATATATTTAAATTT
Found at i:10512098 original size:1 final size:1
Alignment explanation
Indices: 10512092--10512118 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
10512082 ATTTTACCAG
10512092 AAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAA
10512119 GGTCACCGGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:10523071 original size:24 final size:24
Alignment explanation
Indices: 10523033--10523079 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
10523023 CCTAAATTAT
10523033 ACCTTTTATTCATTTTGGTATTTA
1 ACCTTTTATTCATTTTGGTATTTA
* * *
10523057 ACCTTTTTTTTATTTTGTTATTT
1 ACCTTTTATTCATTTTGGTATTT
10523080 GAACTATAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.17, C:0.11, G:0.06, T:0.66
Consensus pattern (24 bp):
ACCTTTTATTCATTTTGGTATTTA
Found at i:10523649 original size:196 final size:196
Alignment explanation
Indices: 10523309--10523899 Score: 1031
Period size: 196 Copynumber: 3.0 Consensus size: 196
10523299 GTAGCTGACA
* *
10523309 AAACAATCACCTAGGTTTCATTTCAGTCACTCAACTTTGGAAAAATAGCAAAACAGTCACTAACG
1 AAACAGTCACCTAGGTTTCATTTCAGTCACTCAACTTTGGAAAAATAACAAAACAGTCACTAACG
*
10523374 TTATTGAAAAGTGACAAATCAATCACTCATTAACATTTTCCGTCACAAGCTTAACGGGATAGCTA
66 TTATTGAAAAGTGACAAATCAGTCACTCATTAACATTTTCCGTCACAAGCTTAACGGGATAGCTA
10523439 ACGTGGCCAATTAACTAGCTGATGTGGCCAGTTAACTTGCCACGTTGGACGAGTAGTCAAAGGGT
131 ACGTGGCCAATTAACTAGCTGATGTGGCCAGTTAACTTGCCACGTTGGACGAGTAGTCAAAGGGT
10523504 C
196 C
* *
10523505 AAGCAGTCACCTAAGTTTCATTTCAGTCACTCAACTTTGGAAAAATAACAAAACAGTCACTAACG
1 AAACAGTCACCTAGGTTTCATTTCAGTCACTCAACTTTGGAAAAATAACAAAACAGTCACTAACG
* *
10523570 TTATTGAAAAGTGGCAAATTAGTCACTCATTAACATTTTCCGTCACAAGCTTAACGGGATAGCTA
66 TTATTGAAAAGTGACAAATCAGTCACTCATTAACATTTTCCGTCACAAGCTTAACGGGATAGCTA
* *
10523635 ACGTGGCCAATTAACTAGCTGCTGTGGCCAGTTAACTTGCCACGTGGGACGAGTAGTCAAAGGGT
131 ACGTGGCCAATTAACTAGCTGATGTGGCCAGTTAACTTGCCACGTTGGACGAGTAGTCAAAGGGT
10523700 C
196 C
*
10523701 AAACAGTCACCTAGGTTTCATTTCAGTCACTCAACTTTGGAAAAATAACAAAACAGTCACTAATG
1 AAACAGTCACCTAGGTTTCATTTCAGTCACTCAACTTTGGAAAAATAACAAAACAGTCACTAACG
*
10523766 TTATTGAAAAGAT-ACAAATCAGTCACTCATTAACATTTTCCGTCACAAACTTAACGGGATAGCT
66 TTATTGAAAAG-TGACAAATCAGTCACTCATTAACATTTTCCGTCACAAGCTTAACGGGATAGCT
* * * *
10523830 GACATGGCCAATTAACTAGCTGATGTGGCTAGTTAACTTGCCACGTTGGACGAGTAGTCAAAAGG
130 AACGTGGCCAATTAACTAGCTGATGTGGCCAGTTAACTTGCCACGTTGGACGAGTAGTCAAAGGG
10523895 TC
195 TC
10523897 AAA
1 AAA
10523900 GAAGAAAAGA
Statistics
Matches: 373, Mismatches: 21, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
196 372 1.00
197 1 0.00
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.26
Consensus pattern (196 bp):
AAACAGTCACCTAGGTTTCATTTCAGTCACTCAACTTTGGAAAAATAACAAAACAGTCACTAACG
TTATTGAAAAGTGACAAATCAGTCACTCATTAACATTTTCCGTCACAAGCTTAACGGGATAGCTA
ACGTGGCCAATTAACTAGCTGATGTGGCCAGTTAACTTGCCACGTTGGACGAGTAGTCAAAGGGT
C
Found at i:10524047 original size:15 final size:14
Alignment explanation
Indices: 10523934--10524049 Score: 53
Period size: 14 Copynumber: 8.1 Consensus size: 14
10523924 CTTCTCTGTG
*
10523934 TCTT-TCTTCTTTT
1 TCTTCTCTTCTTTC
*
10523947 TCTTCTCATCTTTC
1 TCTTCTCTTCTTTC
10523961 TCTTCATCTTC-TTC
1 TCTTC-TCTTCTTTC
* * *
10523975 TCCCTCAACCTCTTTC
1 T-CTTC-TCTTCTTTC
*
10523991 TCTTTATGCTTCTTT-
1 TC-TTCT-CTTCTTTC
* *
10524006 TATT-TTTTCTTGT-
1 TCTTCTCTTCTT-TC
10524019 TCTTCTCTTCTTTC
1 TCTTCTCTTCTTTC
*
10524033 TCTTCATCTTTTTTC
1 TCTTC-TCTTCTTTC
10524048 TC
1 TC
10524050 CCTCAACCTC
Statistics
Matches: 78, Mismatches: 15, Indels: 18
0.70 0.14 0.16
Matches are distributed among these distances:
12 5 0.06
13 10 0.13
14 29 0.37
15 23 0.29
16 11 0.14
ACGTcount: A:0.06, C:0.30, G:0.02, T:0.62
Consensus pattern (14 bp):
TCTTCTCTTCTTTC
Found at i:10524944 original size:3 final size:3
Alignment explanation
Indices: 10524931--10525054 Score: 127
Period size: 3 Copynumber: 43.0 Consensus size: 3
10524921 TTCCATTTTC
* * * *
10524931 TCT TAT TCT TCT TC- TCC TCT TCT TGT T-T TCT TCT TCT TCT TTT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
*
10524977 TCT TCT TCT TTT TCT TCT TCT TCT TCT TCT TCT TCT TC- TCT GT-T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT -TCT
*
10525021 TCT TC- TCT TAT TCT TCT T-T T-T ATCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT -TCT TCT TCT TCT
10525055 ACTGCCCAGG
Statistics
Matches: 103, Mismatches: 10, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
2 12 0.12
3 89 0.86
4 2 0.02
ACGTcount: A:0.02, C:0.28, G:0.02, T:0.68
Consensus pattern (3 bp):
TCT
Done.