Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62811768
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 736185 characters in sequence are not A, C, G, or T
File 53 of 211
Found at i:14178889 original size:21 final size:20
Alignment explanation
Indices: 14178863--14178912 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
14178853 AAATTATATT
*
14178863 AATAATATTTTATTAAATGAA
1 AATAATATTTTAGTAAAT-AA
*
14178884 AATAAT-CTTTAGTAAATAA
1 AATAATATTTTAGTAAATAA
*
14178903 AATGATATTT
1 AATAATATTT
14178913 GTAAATTTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
19 7 0.29
20 11 0.46
21 6 0.25
ACGTcount: A:0.50, C:0.02, G:0.06, T:0.42
Consensus pattern (20 bp):
AATAATATTTTAGTAAATAA
Found at i:14178918 original size:18 final size:20
Alignment explanation
Indices: 14178863--14178918 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 20
14178853 AAATTATATT
*
14178863 AATAATATTTTATTAAATGAA
1 AATAATA-TTTAGTAAATGAA
*
14178884 AATAATCTTTAGTAAAT-AA
1 AATAATATTTAGTAAATGAA
*
14178903 AATGATATTT-GTAAAT
1 AATAATATTTAGTAAAT
14178919 TTTATTAAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
18 6 0.19
19 10 0.32
20 9 0.29
21 6 0.19
ACGTcount: A:0.50, C:0.02, G:0.07, T:0.41
Consensus pattern (20 bp):
AATAATATTTAGTAAATGAA
Found at i:14181645 original size:34 final size:34
Alignment explanation
Indices: 14181602--14181671 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
14181592 TTTAATTAGC
14181602 CCTTACCCACAGTCGATCGGAACGACAAGTGCGA
1 CCTTACCCACAGTCGATCGGAACGACAAGTGCGA
14181636 CCTTACCCACAGTCGATCGGAACGACAAGTGCGA
1 CCTTACCCACAGTCGATCGGAACGACAAGTGCGA
14181670 CC
1 CC
14181672 CTAGGAAAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.29, C:0.34, G:0.23, T:0.14
Consensus pattern (34 bp):
CCTTACCCACAGTCGATCGGAACGACAAGTGCGA
Found at i:14189503 original size:17 final size:17
Alignment explanation
Indices: 14189481--14189515 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
14189471 ACTAGACTTT
14189481 ACTTGTCTAAGTGAGAG
1 ACTTGTCTAAGTGAGAG
14189498 ACTTGTCTAAGTGAGAG
1 ACTTGTCTAAGTGAGAG
14189515 A
1 A
14189516 TTAGTTGTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.31, C:0.11, G:0.29, T:0.29
Consensus pattern (17 bp):
ACTTGTCTAAGTGAGAG
Found at i:14191115 original size:20 final size:20
Alignment explanation
Indices: 14191053--14191133 Score: 74
Period size: 22 Copynumber: 3.9 Consensus size: 20
14191043 AATTGAGATA
*
14191053 AATATTAAATTAAATTAAATAT
1 AATATTAAATT-AA-TAAATTT
* *
14191075 AATACTATATTAAATTAAATTT
1 AATATTAAATT-AA-TAAATTT
14191097 AATATTAAGA-TAATAAATTT
1 AATATTAA-ATTAATAAATTT
*
14191117 AGTATTAAATTAATAAA
1 AATATTAAATTAATAAA
14191134 ATAAAATCAA
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
19 1 0.02
20 21 0.41
21 2 0.04
22 26 0.51
23 1 0.02
ACGTcount: A:0.56, C:0.01, G:0.02, T:0.41
Consensus pattern (20 bp):
AATATTAAATTAATAAATTT
Found at i:14193183 original size:3 final size:3
Alignment explanation
Indices: 14193175--14193228 Score: 108
Period size: 3 Copynumber: 18.0 Consensus size: 3
14193165 TTAAAAGAGT
14193175 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
14193223 ATA ATA
1 ATA ATA
14193229 TGAAATTTGT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:14194346 original size:20 final size:20
Alignment explanation
Indices: 14194321--14194365 Score: 90
Period size: 20 Copynumber: 2.2 Consensus size: 20
14194311 TAATTTGGGC
14194321 TTATTGGGCTACTTGGGCTG
1 TTATTGGGCTACTTGGGCTG
14194341 TTATTGGGCTACTTGGGCTG
1 TTATTGGGCTACTTGGGCTG
14194361 TTATT
1 TTATT
14194366 TGGTGAGGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.11, C:0.13, G:0.31, T:0.44
Consensus pattern (20 bp):
TTATTGGGCTACTTGGGCTG
Found at i:14194833 original size:44 final size:44
Alignment explanation
Indices: 14194784--14194975 Score: 130
Period size: 44 Copynumber: 4.4 Consensus size: 44
14194774 ATCTACTCTG
* *
14194784 CTGTAACTTCAGAGAGATAAGATCCTTCATTTTAATCCACTCCA
1 CTGTAACTTCAGGGAGATAAGATCCTTCATTTCAATCCACTCCA
* * * * ** *
14194828 CTGTAA-TCTCAGGGAGATAGGATTAC-TAACTTCAATCTGCTCCG
1 CTGTAACT-TCAGGGAGATAAGA-TCCTTCATTTCAATCCACTCCA
* * * *
14194872 CTGTAATCTT-AGGGAGATAAGAT-CTGACA---CGATCTACTCTA
1 CTGTAA-CTTCAGGGAGATAAGATCCT-TCATTTCAATCCACTCCA
* * * *
14194913 CTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCA
1 CTGTAACTTCAGGGAGATAAGATCCTTCATTTCAATCCACTCCA
14194957 CTGTAA-TCTCAGGGAGATA
1 CTGTAACT-TCAGGGAGATA
14194976 GGATTACTAG
Statistics
Matches: 111, Mismatches: 25, Indels: 24
0.69 0.16 0.15
Matches are distributed among these distances:
40 3 0.03
41 27 0.24
42 3 0.03
43 3 0.03
44 71 0.64
45 3 0.03
46 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (44 bp):
CTGTAACTTCAGGGAGATAAGATCCTTCATTTCAATCCACTCCA
Found at i:14194892 original size:129 final size:129
Alignment explanation
Indices: 14194729--14195022 Score: 489
Period size: 129 Copynumber: 2.3 Consensus size: 129
14194719 ATCTGAAATT
** * * * *
14194729 TTCAATCTATTCCACTGTAATCTCAGGGAAATAAGACCTGACGCGATCTACTCTGCTGTAACTTC
1 TTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTGACACGATCTACTCTACTGTAACTTC
14194794 AGAGAGATAAGATCCTTCATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAAC
66 AGAGAGATAAGATCCTTCATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAAC
* *
14194858 TTCAATCTGCTCCGCTGTAATCTTAGGGAGATAAGATCTGACACGATCTACTCTACTGTAACTTC
1 TTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTGACACGATCTACTCTACTGTAACTTC
* * *
14194923 AGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGC
66 AGAGAGATAAGATCCTTCATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAAC
14194987 TTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGA
1 TTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGA
14195023 TTTGAAATTC
Statistics
Matches: 153, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
129 153 1.00
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (129 bp):
TTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTGACACGATCTACTCTACTGTAACTTC
AGAGAGATAAGATCCTTCATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAAC
Found at i:14194999 original size:44 final size:44
Alignment explanation
Indices: 14194823--14195716 Score: 451
Period size: 44 Copynumber: 20.2 Consensus size: 44
14194813 TTTTAATCCA
* *
14194823 CTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAATCTG
1 CTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTCAATCTG
* * * * *
14194867 CTCCGCTGTAATCTTAGGGAGATAAGA-T-CT-GAC-ACGATCTA
1 CTCCACTGTAATCTCAGGGAGATAAGATTACTAG-CTTCAATCTG
* * * * * *
14194908 CTCTACTGTAA-CTTCAGAGAGATAAGATCCT-TTA-TTTTAATCCG
1 CTCCACTGTAATC-TCAGGGAGATAAGAT--TACTAGCTTCAATCTG
*
14194952 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTG
1 CTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTCAATCTG
* * * ***
14194996 CTCCGCTGTAATCTCAGGGAGATAAGATTTGA-AATTCTTTGGTCTG
1 CTCCACTGTAATCTCAGGGAGATAAGA-TT-ACTA-GCTTCAATCTG
* * * * * *
14195042 TTCCACTGTAATCTCAGGGAAATAAGA--CCT-GGTGCAATCTA
1 CTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTCAATCTG
** * * * * * * *
14195083 CTCTGCTGTAA-CTTCAGAGAGATAAGATCATTGGTTTTAATCCG
1 CTCCACTGTAATC-TCAGGGAGATAAGATTACTAGCTTCAATCTG
* * *
14195127 CTCCACTGTAATCTCAGGGAGATAGGATTACCAGCTTCAATCTA
1 CTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTCAATCTG
* ** * *
14195171 CTCCGCTGTAATCTCAGGGAGATAAGATCTGAAAATCTTCAGTCTG
1 CTCCACTGTAATCTCAGGGAGATAAGAT-T-ACTAGCTTCAATCTG
* * * * * * *
14195217 TTCCACTGTAATCTCAGGGAAATAAGA--CCT-GGTGCGATCTA
1 CTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTCAATCTG
* * * * * * *
14195258 CTCTACTGTAA-CTTCAGAGAGATAAGATCT-TTGGTTTTAATCCG
1 CTCCACTGTAATC-TCAGGGAGATAAGAT-TACTAGCTTCAATCTG
* *
14195302 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTA
1 CTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTCAATCTG
* * ** * * *
14195346 TTCCGCTGTAATCTCAGGGAGATAAGATCTGAAAATCTTTAGTCTG
1 CTCCACTGTAATCTCAGGGAGATAAGAT-T-ACTAGCTTCAATCTG
* * * * * * *
14195392 TTCCACTGTAATCTCAGGGAAATAAGA--CCT-GGTGCGATCTA
1 CTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTCAATCTG
* * ** * *
14195433 CTCTACTGTAA-CTTCAGAGAGATAAGATCTTTTA-TTTTAAT-TCG
1 CTCCACTGTAATC-TCAGGGAGATAAGAT-TACTAGCTTCAATCT-G
*
14195477 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTG
1 CTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTCAATCTG
* * *
14195521 CTCCGCTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGATGCG
1 CTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTCAATC---T--G
* * * ** * *
14195570 ATCTACTCTGCTGTAA-CTTTAGAGAGATAAGATCTTTTA-TTTCAATCCG
1 --CT-C-C-ACTGTAATC-TCAGGGAGATAAGAT-TACTAGCTTCAATCTG
* **
14195619 CTCCACTGTAA-CTTCAGGGAGATAAGA-TAGT-GTCTTTGATCTG
1 CTCCACTGTAATC-TCAGGGAGATAAGATTACTAG-CTTCAATCTG
*
14195662 CTCCACTGTAATCTCAGGGAGATAAGATCT-CTGGCTTCAATCTG
1 CTCCACTGTAATCTCAGGGAGATAAGAT-TACTAGCTTCAATCTG
14195706 CTCCACTGTAA
1 CTCCACTGTAA
14195717 CCAATGGAGG
Statistics
Matches: 625, Mismatches: 168, Indels: 114
0.69 0.19 0.13
Matches are distributed among these distances:
40 4 0.01
41 101 0.16
42 6 0.01
43 41 0.07
44 319 0.51
45 13 0.02
46 101 0.16
47 3 0.00
49 2 0.00
51 2 0.00
52 1 0.00
53 2 0.00
54 27 0.04
55 3 0.00
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (44 bp):
CTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTCAATCTG
Found at i:14195123 original size:175 final size:175
Alignment explanation
Indices: 14194817--14195548 Score: 1157
Period size: 175 Copynumber: 4.2 Consensus size: 175
14194807 CCTTCATTTT
* * * * * * * *
14194817 AATCCACTCCACTGTAATCTCAGGGAGATAGGAT-T-ACTAA-CTTCAATCTGCTCCGCTGTAAT
1 AATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTGA-AAATCTTTAGTCTGTTCCACTGTAAT
* * * ***
14194879 CTTAGGGAGATAAGATCTGACACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTT-AT
65 CTCAGGGAAATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAGAGATAAGAT-CTTTGAT
14194943 TTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTC
129 TTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTC
* * * *
14194990 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTTGAAATTCTTTGGTCTGTTCCACTGTAATC
1 AATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTGAAAATCTTTAGTCTGTTCCACTGTAATC
* * * *
14195055 TCAGGGAAATAAGACCTGGTGCAATCTACTCTGCTGTAACTTCAGAGAGATAAGATCATTGGTTT
66 TCAGGGAAATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCTTTGATTT
*
14195120 TAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACCAGCTTC
131 TAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTC
*
14195165 AATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTGAAAATCTTCAGTCTGTTCCACTGTAATC
1 AATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTGAAAATCTTTAGTCTGTTCCACTGTAATC
*
14195230 TCAGGGAAATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCTTTGGTTT
66 TCAGGGAAATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCTTTGATTT
14195295 TAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTC
131 TAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTC
*
14195340 AATCTATTCCGCTGTAATCTCAGGGAGATAAGATCTGAAAATCTTTAGTCTGTTCCACTGTAATC
1 AATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTGAAAATCTTTAGTCTGTTCCACTGTAATC
*
14195405 TCAGGGAAATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCTTTTATTT
66 TCAGGGAAATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCTTTGATTT
*
14195470 TAATTCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTC
131 TAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTC
*
14195515 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGAT
1 AATCTACTCCGCTGTAATCTCAGGGAGATAAGAT
14195549 TTCTGGCTTC
Statistics
Matches: 517, Mismatches: 38, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
173 30 0.06
174 5 0.01
175 482 0.93
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.31
Consensus pattern (175 bp):
AATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTGAAAATCTTTAGTCTGTTCCACTGTAATC
TCAGGGAAATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCTTTGATTT
TAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTC
Found at i:14195679 original size:43 final size:44
Alignment explanation
Indices: 14195610--14195717 Score: 139
Period size: 43 Copynumber: 2.5 Consensus size: 44
14195600 GATCTTTTAT
* * *
14195610 TTCAATCCGCTCCACTGTAACTTCAGGGAGATAAGAT-AGTGTC
1 TTCAATCTGCTCCACTGTAACTTCAGGGAGATAAGATCACTGGC
** *
14195653 TTTGATCTGCTCCACTGTAA-TCTCAGGGAGATAAGATCTCTGGC
1 TTCAATCTGCTCCACTGTAACT-TCAGGGAGATAAGATCACTGGC
14195697 TTCAATCTGCTCCACTGTAAC
1 TTCAATCTGCTCCACTGTAAC
14195718 CAATGGAGGC
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
42 1 0.02
43 32 0.59
44 21 0.39
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (44 bp):
TTCAATCTGCTCCACTGTAACTTCAGGGAGATAAGATCACTGGC
Found at i:14195859 original size:88 final size:88
Alignment explanation
Indices: 14195723--14196137 Score: 617
Period size: 88 Copynumber: 4.8 Consensus size: 88
14195713 GTAACCAATG
* * * ** *
14195723 GAGGCAAGGCTTTGT-T-TTCGATCTGCTTCGTTGTTAACGCAGGAAGGCAAGATCTGCTATCTT
1 GAGGCAAGG-TTTGTGTCTTCGACCTGCTTCGTTGTCAATGCAGGAAGGCAAGATCTTTTGTCTT
* *
14195786 CAACTAGCTCCA-CTGCAACCGATG-
65 CAACCAGCTCCATC-ACAACCGA-GA
* * *
14195810 GAGGCAAGGTTTGTGTTTTCGACCTGCTTCGCTGTCAATACAGGAAGGCAAGATCTTTTGTCTTC
1 GAGGCAAGGTTTGTGTCTTCGACCTGCTTCGTTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTC
14195875 AACCAGCTCCATCACAACCGAGA
66 AACCAGCTCCATCACAACCGAGA
* *
14195898 GAGGCAAGG-TT-TGTCTTCGACCTGCTTCGCTGTAAATGCAGGAAGGCAAGATCTTTTGTCTTC
1 GAGGCAAGGTTTGTGTCTTCGACCTGCTTCGTTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTC
14195961 AACCAGCTCCATCACAACCGAGA
66 AACCAGCTCCATCACAACCGAGA
*
14195984 GAGGCAAGGTTTGAGTCTTCGACCTGCTTCGTTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTC
1 GAGGCAAGGTTTGTGTCTTCGACCTGCTTCGTTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTC
14196049 AACCAGCTCCATCACAACCGAGA
66 AACCAGCTCCATCACAACCGAGA
* *
14196072 GAGGCAAGGTTTGTGTCTTCGACCTGCTTCGTTGTCAATGCAGGAAGACAAGATCTGTTGTCTTC
1 GAGGCAAGGTTTGTGTCTTCGACCTGCTTCGTTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTC
14196137 A
66 A
14196138 CTGATCTGTT
Statistics
Matches: 303, Mismatches: 19, Indels: 11
0.91 0.06 0.03
Matches are distributed among these distances:
86 86 0.28
87 15 0.05
88 201 0.66
89 1 0.00
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (88 bp):
GAGGCAAGGTTTGTGTCTTCGACCTGCTTCGTTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTC
AACCAGCTCCATCACAACCGAGA
Found at i:14195942 original size:174 final size:175
Alignment explanation
Indices: 14195723--14196137 Score: 629
Period size: 174 Copynumber: 2.4 Consensus size: 175
14195713 GTAACCAATG
* * * * * *
14195723 GAGGCAAGGCTTTGTTTTCGATCTGCTTCGTTGTTAACGCAGGAAGGCAAGATCTGCTATCTTCA
1 GAGGCAAGGCTTTGTCTTCGACCTGCTTCGTTGTAAATGCAGGAAGGCAAGATCTGTTGTCTTCA
* * * *
14195788 ACTAGCTCCA-CTGCAACCGATG-GAGGCAAGGTTTGTGTTTTCGACCTGCTTCGCTGTCAATAC
66 ACCAGCTCCATC-ACAACCGA-GAGAGGCAAGGTTTGAGTCTTCGACCTGCTTCGCTGTCAATAC
14195851 AGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGA
129 AGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGA
* *
14195898 GAGGCAAGG-TTTGTCTTCGACCTGCTTCGCTGTAAATGCAGGAAGGCAAGATCTTTTGTCTTCA
1 GAGGCAAGGCTTTGTCTTCGACCTGCTTCGTTGTAAATGCAGGAAGGCAAGATCTGTTGTCTTCA
* *
14195962 ACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGAGTCTTCGACCTGCTTCGTTGTCAATGCAG
66 ACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGAGTCTTCGACCTGCTTCGCTGTCAATACAG
14196027 GAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGA
131 GAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGA
* * *
14196072 GAGGCAAGGTTTGTGTCTTCGACCTGCTTCGTTGTCAATGCAGGAAGACAAGATCTGTTGTCTTC
1 GAGGCAAGGCTT-TGTCTTCGACCTGCTTCGTTGTAAATGCAGGAAGGCAAGATCTGTTGTCTTC
14196137 A
65 A
14196138 CTGATCTGTT
Statistics
Matches: 218, Mismatches: 18, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
173 1 0.00
174 156 0.72
175 12 0.06
176 49 0.22
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (175 bp):
GAGGCAAGGCTTTGTCTTCGACCTGCTTCGTTGTAAATGCAGGAAGGCAAGATCTGTTGTCTTCA
ACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGAGTCTTCGACCTGCTTCGCTGTCAATACAG
GAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGA
Found at i:14197315 original size:8 final size:7
Alignment explanation
Indices: 14197295--14197326 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
14197285 TTAGCCTCTC
14197295 CATTTTT
1 CATTTTT
14197302 CATTTTT
1 CATTTTT
14197309 CATTTTT
1 CATTTTT
14197316 -A-TTTT
1 CATTTTT
14197321 CATTTT
1 CATTTT
14197327 ATTTTATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
5 4 0.17
6 2 0.09
7 17 0.74
ACGTcount: A:0.16, C:0.12, G:0.00, T:0.72
Consensus pattern (7 bp):
CATTTTT
Found at i:14198188 original size:10 final size:8
Alignment explanation
Indices: 14198159--14198232 Score: 64
Period size: 8 Copynumber: 9.4 Consensus size: 8
14198149 TGACCTCTCC
14198159 TTTTTCTT
1 TTTTTCTT
14198167 TTTTTCTT
1 TTTTTCTT
*
14198175 TTTTTCCT
1 TTTTTCTT
*
14198183 TATTT-TT
1 TTTTTCTT
**
14198190 CCTTTC-T
1 TTTTTCTT
14198197 TTTTTCTT
1 TTTTTCTT
14198205 TTTCTTCTT
1 TTT-TTCTT
*
14198214 TCTTTTATT
1 T-TTTTCTT
14198223 TTTTT-TT
1 TTTTTCTT
14198230 TTT
1 TTT
14198233 GATTTTTTGA
Statistics
Matches: 54, Mismatches: 8, Indels: 9
0.76 0.11 0.13
Matches are distributed among these distances:
7 14 0.26
8 27 0.50
9 11 0.20
10 2 0.04
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (8 bp):
TTTTTCTT
Found at i:14198208 original size:13 final size:13
Alignment explanation
Indices: 14198192--14198232 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
14198182 TTATTTTTCC
14198192 TTTCTTTTTTCTT
1 TTTCTTTTTTCTT
*
14198205 TTTCTTCTTTCTT
1 TTTCTTTTTTCTT
14198218 TTAT-TTTTTT-TT
1 TT-TCTTTTTTCTT
14198230 TTT
1 TTT
14198233 GATTTTTTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
11 1 0.04
12 4 0.16
13 19 0.76
14 1 0.04
ACGTcount: A:0.02, C:0.12, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTCTTTTTTCTT
Found at i:14198230 original size:30 final size:30
Alignment explanation
Indices: 14198160--14198231 Score: 76
Period size: 30 Copynumber: 2.4 Consensus size: 30
14198150 GACCTCTCCT
*
14198160 TTTTCTTTTTTTCTTTTTTTCCTTATTTTTC
1 TTTT-TTTTTTTCTTTTTTTCCTTATTTTTA
* *
14198191 CTTTCTTTTTTCTTTTTCTT-CTT-TCTTTTA
1 TTTTTTTTTTTCTTTTT-TTCCTTAT-TTTTA
14198221 TTTTTTTTTTT
1 TTTTTTTTTTT
14198232 TGATTTTTTG
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
29 1 0.03
30 28 0.82
31 5 0.15
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (30 bp):
TTTTTTTTTTTCTTTTTTTCCTTATTTTTA
Found at i:14198231 original size:31 final size:29
Alignment explanation
Indices: 14198159--14198232 Score: 76
Period size: 31 Copynumber: 2.4 Consensus size: 29
14198149 TGACCTCTCC
*
14198159 TTTTTCTTTTTTTCTTTTTTTCCTTATTT
1 TTTTTTTTTTTTTCTTTTTTTCCTTATTT
* * * *
14198188 TTCCTTTCTTTTTTCTTTTTCTTCTTTCTTT
1 TT-TTTTTTTTTTTCTTTTT-TTCCTTATTT
14198219 TATTTTTTTTTTTT
1 T-TTTTTTTTTTTT
14198233 GATTTTTTGA
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
29 2 0.06
30 14 0.40
31 18 0.51
32 1 0.03
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (29 bp):
TTTTTTTTTTTTTCTTTTTTTCCTTATTT
Found at i:14198245 original size:22 final size:21
Alignment explanation
Indices: 14198216--14198262 Score: 67
Period size: 22 Copynumber: 2.2 Consensus size: 21
14198206 TTCTTCTTTC
**
14198216 TTTTATTTTTTTTTTTTGATT
1 TTTTATTTTTTTTGATTGATT
14198237 TTTTGATTTTTTTTGATTGATT
1 TTTT-ATTTTTTTTGATTGATT
14198259 TTTT
1 TTTT
14198263 TTGGAATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 4 0.17
22 19 0.83
ACGTcount: A:0.11, C:0.00, G:0.09, T:0.81
Consensus pattern (21 bp):
TTTTATTTTTTTTGATTGATT
Found at i:14198265 original size:14 final size:14
Alignment explanation
Indices: 14198239--14198265 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
14198229 TTTTGATTTT
14198239 TTGATTTTTTTTGA
1 TTGATTTTTTTTGA
14198253 TTGATTTTTTTTG
1 TTGATTTTTTTTG
14198266 GAATTTTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.11, C:0.00, G:0.15, T:0.74
Consensus pattern (14 bp):
TTGATTTTTTTTGA
Found at i:14203185 original size:3 final size:3
Alignment explanation
Indices: 14203177--14203227 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
14203167 TTAAAAGAGT
14203177 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
14203225 ATA
1 ATA
14203228 TGAAATTTGT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:14211800 original size:24 final size:24
Alignment explanation
Indices: 14211773--14211819 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
14211763 AATTAATTTT
*
14211773 TATAATTTTAATGATTTTAAAATA
1 TATAATTTTAATAATTTTAAAATA
* * *
14211797 TATATTTTTTATAATTTTCAAAT
1 TATAATTTTAATAATTTTAAAAT
14211820 TTTAAAAAAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.55
Consensus pattern (24 bp):
TATAATTTTAATAATTTTAAAATA
Found at i:14215683 original size:5 final size:5
Alignment explanation
Indices: 14215643--14215681 Score: 60
Period size: 5 Copynumber: 7.8 Consensus size: 5
14215633 TACATATATA
* *
14215643 TGAAT TGGAT TGAAT TGAAT TGAAT TGAAT TGAAA TGAA
1 TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT TGAA
14215682 ATAAGTGATT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.41, C:0.00, G:0.23, T:0.36
Consensus pattern (5 bp):
TGAAT
Found at i:14221271 original size:8 final size:8
Alignment explanation
Indices: 14221231--14221261 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
14221221 CTTGTTTTAT
14221231 TATAATAA
1 TATAATAA
14221239 TATAATAA
1 TATAATAA
14221247 TATAATAA
1 TATAATAA
14221255 TATAATA
1 TATAATA
14221262 TAACAATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (8 bp):
TATAATAA
Found at i:14228675 original size:192 final size:192
Alignment explanation
Indices: 14228339--14228719 Score: 692
Period size: 192 Copynumber: 2.0 Consensus size: 192
14228329 CAAACTGATG
14228339 ATAAGTGGTGTAACACCCCCAAACCTAGCCCAGAAGTTATAACTAGATATTGAGGAATTACATCA
1 ATAAGTGGTGTAACACCCCCAAACCTAGCCCAGAAGTTATAACTAGATATTGAGGAATTACATCA
* *
14228404 ACTTGTTCAGAAGTTTTTTGTTTTAATCAAACTCAGTGCATGTTTTGAAAGAATAAAAATTGGCA
66 ACTTGTTCAGAAGTCTTTTGTTTTAATCAAACTCAGTGCATGCTTTGAAAGAATAAAAATTGGCA
* * *
14228469 AAACGCTTATAGATGTTTAGCAAGACTAAAGTTAGAAAACACTTATTTAAAACCCAGAAGTT
131 AAACGCTCATAGATGTTTAGCAAAACTAAAGTCAGAAAACACTTATTTAAAACCCAGAAGTT
14228531 ATAAGTGGTGTAACACCCCCAAACCTAGCCCAGAAGTTATAACTAGATATTGAGGAATTACATCA
1 ATAAGTGGTGTAACACCCCCAAACCTAGCCCAGAAGTTATAACTAGATATTGAGGAATTACATCA
14228596 ACTTGTTCAGAAG-CTTTTGTTTTAATCAAACTCAGTGCATGCTTTGAAAGAATAAAAAATTGGC
66 ACTTGTTCAGAAGTCTTTTGTTTTAATCAAACTCAGTGCATGCTTTGAAAGAAT-AAAAATTGGC
*
14228660 AAAACTCTCATAGATGTTTAGCAAAACTAAAGTCAGAAAACACTTATTTAAAACCCAGAA
130 AAAACGCTCATAGATGTTTAGCAAAACTAAAGTCAGAAAACACTTATTTAAAACCCAGAA
14228720 TTTGAATTCA
Statistics
Matches: 182, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
191 38 0.21
192 144 0.79
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.28
Consensus pattern (192 bp):
ATAAGTGGTGTAACACCCCCAAACCTAGCCCAGAAGTTATAACTAGATATTGAGGAATTACATCA
ACTTGTTCAGAAGTCTTTTGTTTTAATCAAACTCAGTGCATGCTTTGAAAGAATAAAAATTGGCA
AAACGCTCATAGATGTTTAGCAAAACTAAAGTCAGAAAACACTTATTTAAAACCCAGAAGTT
Found at i:14229454 original size:59 final size:59
Alignment explanation
Indices: 14229362--14229476 Score: 203
Period size: 59 Copynumber: 1.9 Consensus size: 59
14229352 AATTGTGGAC
* *
14229362 ATTGCCACCAGAATTACAATTAAAACTGTCATATAAGATATATGTGGTCAAGCCACTAT
1 ATTGCCACCAGAATTACAATTAAAACTGTCATATAAGATATATATGGTCAAACCACTAT
*
14229421 ATTGCCACCAGAATTGCAATTAAAACTGTCATATAAGATATATATGGTCAAACCAC
1 ATTGCCACCAGAATTACAATTAAAACTGTCATATAAGATATATATGGTCAAACCAC
14229477 CAGATAGTGC
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 53 1.00
ACGTcount: A:0.40, C:0.19, G:0.13, T:0.28
Consensus pattern (59 bp):
ATTGCCACCAGAATTACAATTAAAACTGTCATATAAGATATATATGGTCAAACCACTAT
Found at i:14242996 original size:96 final size:89
Alignment explanation
Indices: 14242827--14243082 Score: 297
Period size: 84 Copynumber: 2.9 Consensus size: 89
14242817 CTAGGAAGTT
* * * **
14242827 TGAGGCATGGTCTTGACAGACAATTGGTAGAGGTGCCAAGAACCTTGAATGGTAACTTGCCTTAC
1 TGAGGCATAGTCTTGACAGACAAATGGTAGAGGTGCCAAGAACCTTAAATGGTAACTTGTATTAC
14242892 ATGCATGAGCACAAGCATGGGCATGAACAAG
66 ATGCATGAG--C-AG-A---GCATGAACAAG
* * * *
14242923 TGAGGCATAGTCTTGACAGACAAGTGGTAGGGGTGCCAAGAACCATAAATGATAACTTGTATTAC
1 TGAGGCATAGTCTTGACAGACAAATGGTAGAGGTGCCAAGAACCTTAAATGGTAACTTGTATTAC
*
14242988 ATG--T-A--TGAGCATGAACAAG
66 ATGCATGAGCAGAGCATGAACAAG
* * *
14243007 CGAGGCATAGTCTTGACAGACAAAAGGTAGAGGTGCCAAGAACCTTACATGGTAACTTGTATTAC
1 TGAGGCATAGTCTTGACAGACAAATGGTAGAGGTGCCAAGAACCTTAAATGGTAACTTGTATTAC
14243072 ATGCATGAGCA
66 ATGCATGAGCA
14243083 TGAAAATAGT
Statistics
Matches: 138, Mismatches: 17, Indels: 17
0.80 0.10 0.10
Matches are distributed among these distances:
84 72 0.52
86 1 0.01
87 2 0.01
88 1 0.01
93 1 0.01
94 1 0.01
96 60 0.43
ACGTcount: A:0.34, C:0.17, G:0.27, T:0.23
Consensus pattern (89 bp):
TGAGGCATAGTCTTGACAGACAAATGGTAGAGGTGCCAAGAACCTTAAATGGTAACTTGTATTAC
ATGCATGAGCAGAGCATGAACAAG
Found at i:14243063 original size:84 final size:83
Alignment explanation
Indices: 14242906--14243243 Score: 381
Period size: 84 Copynumber: 4.1 Consensus size: 83
14242896 ATGAGCACAA
* * * * * *
14242906 GCATGGGCATGAACAAGTGAGGCATAGTCTTGACAGACAAGTGGTAGGGGTGCCAAGAACCATAA
1 GCATGAGCATGAACAA-CGAGGCATAGTCTTGACAGACAAATGGTAGAGATGCCAAGAACCTTAA
14242971 ATGATAACTTGTATTACAT
65 ATGATAACTTGTATTACAT
* * * *
14242990 GTATGAGCATGAACAAGCGAGGCATAGTCTTGACAGACAAAAGGTAGAGGTGCCAAGAACCTTAC
1 GCATGAGCATGAACAA-CGAGGCATAGTCTTGACAGACAAATGGTAGAGATGCCAAGAACCTTAA
*
14243055 ATGGTAACTTGTATTACAT
65 ATGATAACTTGTATTACAT
* *
14243074 GCATGAGCATG---AA--A---ATAGTCTTGACAGACAAATGATAGAGATGCCAAGAGCCTTAAA
1 GCATGAGCATGAACAACGAGGCATAGTCTTGACAGACAAATGGTAGAGATGCCAAGAACCTTAAA
* *
14243131 TGGTAACTCGTATTACAT
66 TGATAACTTGTATTACAT
* * * * *
14243149 GCATTAGCA-CAAGCCAACGAGGCATAGTGTTGACAGACAAATGGTAGAGATGCCAAGAGCCTTG
1 GCATGAGCATGAA--CAACGAGGCATAGTCTTGACAGACAAATGGTAGAGATGCCAAGAACCTTA
*
14243213 AATGATAACTTGTACTACAT
64 AATGATAACTTGTATTACAT
14243233 -CATGAGCATGA
1 GCATGAGCATGA
14243244 GCATGAACTT
Statistics
Matches: 217, Mismatches: 26, Indels: 22
0.82 0.10 0.08
Matches are distributed among these distances:
75 63 0.29
78 1 0.00
79 2 0.01
81 3 0.01
83 7 0.03
84 141 0.65
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (83 bp):
GCATGAGCATGAACAACGAGGCATAGTCTTGACAGACAAATGGTAGAGATGCCAAGAACCTTAAA
TGATAACTTGTATTACAT
Found at i:14243113 original size:75 final size:76
Alignment explanation
Indices: 14243013--14243243 Score: 261
Period size: 75 Copynumber: 2.9 Consensus size: 76
14243003 CAAGCGAGGC
* * *
14243013 ATAGTCTTGACAGACAAAAGGTAGAGGTGCCAAGAACCTTACATGGTAACTTGTATTACATGCAT
1 ATAGTCTTGACAGACAAATGGTAGAGATGCCAAGAGCCTTA-ATGGTAACTTGTATTACATGCAT
14243078 GAGCATGAA-A-
65 GAGCATGAACAG
* *
14243088 ATAGTCTTGACAGACAAATGATAGAGATGCCAAGAGCCTTAAATGGTAACTCGTATTACATGCAT
1 ATAGTCTTGACAGACAAATGGTAGAGATGCCAAGAGCCTT-AATGGTAACTTGTATTACATGCAT
* *
14243153 TAGCACAAGCCAACGAGG
65 GAG--CATG--AAC-A-G
* * *
14243171 CATAGTGTTGACAGACAAATGGTAGAGATGCCAAGAGCCTTGAATGATAACTTGTACTACAT-CA
1 -ATAGTCTTGACAGACAAATGGTAGAGATGCCAAGAGCCTT-AATGGTAACTTGTATTACATGCA
14243235 TGAGCATGA
64 TGAGCATGA
14243244 GCATGAACTT
Statistics
Matches: 131, Mismatches: 15, Indels: 16
0.81 0.09 0.10
Matches are distributed among these distances:
75 60 0.46
76 1 0.01
77 3 0.02
79 3 0.02
81 4 0.03
83 5 0.04
84 55 0.42
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.23
Consensus pattern (76 bp):
ATAGTCTTGACAGACAAATGGTAGAGATGCCAAGAGCCTTAATGGTAACTTGTATTACATGCATG
AGCATGAACAG
Found at i:14243222 original size:159 final size:158
Alignment explanation
Indices: 14242929--14243243 Score: 420
Period size: 159 Copynumber: 2.0 Consensus size: 158
14242919 CAAGTGAGGC
* * * * * *
14242929 ATAGTCTTGACAGACAAGTGGTAGGGGTGCCAAGAACCATAAATGATAACTTGTATTACATGTAT
1 ATAGTCTTGACAGACAAATGATAGAGATGCCAAGAACCATAAATGATAACTCGTATTACATGCAT
* * *
14242994 GAGCATGAACAAGCGAGGCATAGTCTTGACAGACAAAAGGTAGAGGTGCCAAGAACCTTACATGG
66 GAGCATCAACAAGCGAGGCATAGTCTTGACAGACAAAAGGTAGAGATGCCAAGAACCTTACATGA
*
14243059 TAACTTGTATTACATGCATGAGCATGAAA
131 TAACTTGTACTACAT-CATGAGCATGAAA
* * *
14243088 ATAGTCTTGACAGACAAATGATAGAGATGCCAAGAGCCTTAAATGGTAACTCGTATTACATGCAT
1 ATAGTCTTGACAGACAAATGATAGAGATGCCAAGAACCATAAATGATAACTCGTATTACATGCAT
* * * *
14243153 TAGCA-CAAGCCAA-CGAGGCATAGTGTTGACAGACAAATGGTAGAGATGCCAAGAGCCTTGA-A
66 GAGCATCAA--CAAGCGAGGCATAGTCTTGACAGACAAAAGGTAGAGATGCCAAGAACCTT-ACA
14243215 TGATAACTTGTACTACATCATGAGCATGA
128 TGATAACTTGTACTACATCATGAGCATGA
14243244 GCATGAACTT
Statistics
Matches: 136, Mismatches: 17, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
158 13 0.10
159 119 0.88
160 4 0.03
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.23
Consensus pattern (158 bp):
ATAGTCTTGACAGACAAATGATAGAGATGCCAAGAACCATAAATGATAACTCGTATTACATGCAT
GAGCATCAACAAGCGAGGCATAGTCTTGACAGACAAAAGGTAGAGATGCCAAGAACCTTACATGA
TAACTTGTACTACATCATGAGCATGAAA
Found at i:14243885 original size:22 final size:24
Alignment explanation
Indices: 14243858--14243906 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
14243848 ATTGGTTAAA
*
14243858 ATTATTTTAA-A-ATTGCTTTTTT
1 ATTATTTTAATATAATGCTTTTTT
14243880 ATTATTTTAATATAATGCTTTTTT
1 ATTATTTTAATATAATGCTTTTTT
14243904 ATT
1 ATT
14243907 TAATTAATGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 10 0.42
23 1 0.04
24 13 0.54
ACGTcount: A:0.29, C:0.04, G:0.04, T:0.63
Consensus pattern (24 bp):
ATTATTTTAATATAATGCTTTTTT
Found at i:14243907 original size:21 final size:20
Alignment explanation
Indices: 14243876--14243915 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
14243866 AAAATTGCTT
14243876 TTTTATTATTTTAATATAATGC
1 TTTTATTA-TTTAAT-TAATGC
14243898 TTTT-TTATTTAATTAATG
1 TTTTATTATTTAATTAATG
14243916 GTTAAGAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 5 0.28
20 6 0.33
21 3 0.17
22 4 0.22
ACGTcount: A:0.30, C:0.03, G:0.05, T:0.62
Consensus pattern (20 bp):
TTTTATTATTTAATTAATGC
Found at i:14244307 original size:78 final size:78
Alignment explanation
Indices: 14244174--14244326 Score: 288
Period size: 78 Copynumber: 2.0 Consensus size: 78
14244164 ATCAAGCTAA
*
14244174 AACTTGATTAGATGTAGTCAATAATCATATGAATTTAGAATTAGTTAGGCGCTAAACATCAAGTA
1 AACTTGATTAGATGTAGTCAATAATCATATGAATTTAGAATTAGTTAGGCACTAAACATCAAGTA
14244239 AAGCAAAGCATGC
66 AAGCAAAGCATGC
*
14244252 AACTTGTTTAGATGTAGTCAATAATCATATGAATTTAGAATTAGTTAGGCACTAAACATCAAGTA
1 AACTTGATTAGATGTAGTCAATAATCATATGAATTTAGAATTAGTTAGGCACTAAACATCAAGTA
14244317 AAGCAAAGCA
66 AAGCAAAGCA
14244327 ACCAAAGATA
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
78 73 1.00
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.29
Consensus pattern (78 bp):
AACTTGATTAGATGTAGTCAATAATCATATGAATTTAGAATTAGTTAGGCACTAAACATCAAGTA
AAGCAAAGCATGC
Found at i:14244765 original size:84 final size:82
Alignment explanation
Indices: 14244623--14244957 Score: 387
Period size: 84 Copynumber: 4.1 Consensus size: 82
14244613 TCATGCTCAC
* * * *
14244623 GCTCATGCATGTAGTACAAGTTACCATTCAAGGCTCTTGGCATCTCTACCATTTGTCTGTCAACA
1 GCTCATGCATGTAATACAAGTTACCATTTAAGGCTCTTGGCACCTCTACCATTTGTCTGTCAAGA
*
14244688 CTATGCCTCGCTGGCTTGT
66 CTATGCCTCGCT-G-TTAT
* * * * *
14244707 GCTCATGCATGTAATACGAGTTACCATTTAAGGTTCTTGGCATCTCTATCATTCGTCTGTCAAGA
1 GCTCATGCATGTAATACAAGTTACCATTTAAGGCTCTTGGCACCTCTACCATTTGTCTGTCAAGA
*
14244772 CTAT---T---T-TCAT
66 CTATGCCTCGCTGTTAT
* *
14244782 GCTCATGCATGTAATACAAGTTACCATGTAAGGCTCTTGGCACCTCTACCTTTTGTCTGTCAAGA
1 GCTCATGCATGTAATACAAGTTACCATTTAAGGCTCTTGGCACCTCTACCATTTGTCTGTCAAGA
14244847 CTATGCCTCGCTTGTTCAT
66 CTATGCCTCGC-TGTT-AT
* * * * * *
14244866 GCTCATACATGTAATACAAGTTATCATTTATGGTTCTTGGCACCCCTACCACTTGTCTGTCAAGA
1 GCTCATGCATGTAATACAAGTTACCATTTAAGGCTCTTGGCACCTCTACCATTTGTCTGTCAAGA
*
14244931 CTATGCCTCACTTGTTCAT
66 CTATGCCTCGC-TGTT-AT
14244950 GCTCATGC
1 GCTCATGC
14244958 TTGTGCTCAT
Statistics
Matches: 215, Mismatches: 27, Indels: 18
0.83 0.10 0.07
Matches are distributed among these distances:
75 64 0.30
78 2 0.01
81 1 0.00
82 1 0.00
83 1 0.00
84 146 0.68
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.35
Consensus pattern (82 bp):
GCTCATGCATGTAATACAAGTTACCATTTAAGGCTCTTGGCACCTCTACCATTTGTCTGTCAAGA
CTATGCCTCGCTGTTAT
Found at i:14244924 original size:159 final size:159
Alignment explanation
Indices: 14244623--14244934 Score: 459
Period size: 159 Copynumber: 2.0 Consensus size: 159
14244613 TCATGCTCAC
* *
14244623 GCTCATGCATGTAGTACAAGTTACCATTCAAGGCTCTTGGCATCTCTACCATTTGTCTGTCAACA
1 GCTCATGCATGTAATACAAGTTACCATTCAAGGCTCTTGGCACCTCTACCATTTGTCTGTCAACA
* * * * *
14244688 CTATGCCTCGCTGGCTTGTGCTCATGCATGTAATACGAGTTACCATTTAAGGTTCTTGGCATCTC
66 CTATGCCTCGCTGGCTTATGCTCATACATGTAATACAAGTTACCATTTAAGGTTCTTGGCACCCC
*
14244753 TATCATTCGTCTGTCAAGACTATTTTCAT
131 TACCATTCGTCTGTCAAGACTATTTTCAT
* *
14244782 GCTCATGCATGTAATACAAGTTACCATGT-AAGGCTCTTGGCACCTCTACCTTTTGTCTGTCAAG
1 GCTCATGCATGTAATACAAGTTACCAT-TCAAGGCTCTTGGCACCTCTACCATTTGTCTGTCAAC
* * *
14244846 ACTATGCCTCGCTTG-TTCATGCTCATACATGTAATACAAGTTATCATTTATGGTTCTTGGCACC
65 ACTATGCCTCGCTGGCTT-ATGCTCATACATGTAATACAAGTTACCATTTAAGGTTCTTGGCACC
14244910 CCTACCACTT-GTCTGTCAAGACTAT
129 CCTACCA-TTCGTCTGTCAAGACTAT
14244935 GCCTCACTTG
Statistics
Matches: 137, Mismatches: 13, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
158 2 0.01
159 132 0.96
160 3 0.02
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (159 bp):
GCTCATGCATGTAATACAAGTTACCATTCAAGGCTCTTGGCACCTCTACCATTTGTCTGTCAACA
CTATGCCTCGCTGGCTTATGCTCATACATGTAATACAAGTTACCATTTAAGGTTCTTGGCACCCC
TACCATTCGTCTGTCAAGACTATTTTCAT
Found at i:14248721 original size:3 final size:3
Alignment explanation
Indices: 14248713--14248758 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
14248703 GTAGACGAGG
14248713 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
14248759 AGCGGGTGGT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:14257504 original size:14 final size:14
Alignment explanation
Indices: 14257485--14257512 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
14257475 CCTTTTTATT
14257485 AATGAATTATTAAA
1 AATGAATTATTAAA
14257499 AATGAATTATTAAA
1 AATGAATTATTAAA
14257513 TATAATTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.36
Consensus pattern (14 bp):
AATGAATTATTAAA
Found at i:14274282 original size:75 final size:76
Alignment explanation
Indices: 14273783--14274862 Score: 1339
Period size: 76 Copynumber: 14.2 Consensus size: 76
14273773 ACAATTTCTT
* * * * *
14273783 TTTCTATTTTTTAAAAATCAATTCATAATCCGAGAGGTGAGTTGAGCCTCGAGTCGCACGCCGGG
1 TTTCTATTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAG
14273848 GTATTTTTCAA
66 GTATTTTTCAA
* * * * * * *
14273859 TTTCTATTTTTTAAAAATCAACTCATAATCTGATAGATGAGTTGAGCCTCGGGTCGCGCGCTGAG
1 TTTCTATTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAG
14273924 GTATTTTTCAA
66 GTATTTTTCAA
*
14273935 TTTCTGTTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAG
1 TTTCTATTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAG
*
14274000 ATATTTTTCAA
66 GTATTTTTCAA
* ** **
14274011 TTTCTGTTTTTCAAAAATTCAACTCATAATATGAGAGGTGAGTTGAGCCTCGGGTCACACGTTGA
1 TTTCTATTTTTCAAAAA-TCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGA
*
14274076 GGTATTCTTCAA
65 GGTATTTTTCAA
* * * * *
14274088 TTTTTATTTTTTAAAAATCAACTCATAATCCGAGAGGTAAGTTGAGCATCGGGTCACAGGCCGAG
1 TTTCTATTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAG
*
14274153 GTATTTTTCCA
66 GTATTTTTCAA
* * * *
14274164 TTTCTATTTTTCAAAAAATCAACTCATAATACGAGAGGAGAGTTGAGCCTCGAGTCACACACCGA
1 TTTCTATTTTTC-AAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGA
14274229 GGTATTTTT-AA
65 GGTATTTTTCAA
* * * *
14274240 TTTTTATTTTTCAAAAATCAACTCATAGTTCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAG
1 TTTCTATTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAG
14274305 GTATTTTT-AA
66 GTATTTTTCAA
* * *
14274315 TTTATGTTTTTTAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAG
1 TTTCTATTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAG
14274380 GTA-TTTTCAA
66 GTATTTTTCAA
* * * *
14274390 TTTATGTTTTTTCAAAAATCAACTCATAATCCGAGGGGTGAGTTGAGCCTCGGGTCACACGCCCA
1 TTTCT-ATTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGA
*
14274455 GGAATTTTTCAA
65 GGTATTTTTCAA
** * * * * *
14274467 TTTCTATTTTTTTTTCAAAAATCAACTCATAATCTTATAGGTGAGTTAAGCCTTGGGTCACATGT
1 TTTCTA----TTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACGC
*
14274532 CGAGATATTTTTCAA
62 CGAGGTATTTTTCAA
* * * ** *
14274547 TTTCTGTTTTTCAAAAATCAAATCATAATCTGAGAGGTGAGTTGAGCCTCAAGT-AGCACGCTGA
1 TTTCTATTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCA-CACGCCGA
14274611 GGTATTTTT-AA
65 GGTATTTTTCAA
* * *
14274622 TTTCTGTTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCTTCGGGTCACACGTCGAG
1 TTTCTATTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAG
14274687 GTATTTTTCAA
66 GTATTTTTCAA
* * * *** **
14274698 TTTTTGTTTTTCAAAAATCAACTCATAATCCGAGAGGTGACTTGAGCCTCGGGTCGTGCGTTGAG
1 TTTCTATTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAG
14274763 GTA-TTTTCAA
66 GTATTTTTCAA
** * * ***
14274773 TTTCTATTTTTCAATGATCAACTCATAATCCGAGAGGTGAGTTGAGCTTCGAGTTGTACGCCGAG
1 TTTCTATTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAG
* *
14274838 CTA-TTTCCAA
66 GTATTTTTCAA
14274848 TTT-TCATTTTTCAAA
1 TTTCT-ATTTTTCAAA
14274863 TAAAAAATAA
Statistics
Matches: 875, Mismatches: 116, Indels: 27
0.86 0.11 0.03
Matches are distributed among these distances:
74 5 0.01
75 274 0.31
76 400 0.46
77 132 0.15
80 64 0.07
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.35
Consensus pattern (76 bp):
TTTCTATTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAG
GTATTTTTCAA
Found at i:14274823 original size:151 final size:152
Alignment explanation
Indices: 14273789--14274819 Score: 1363
Period size: 151 Copynumber: 6.8 Consensus size: 152
14273779 TCTTTTTCTA
* * * *
14273789 TTTTTTAAAAATCAATTCATAATCCGAGAGGTGAGTTGAGCCTCGAGTCGCACGCCGGGGTATTT
1 TTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAGGTATTT
* * * * * *
14273854 TTCAATTTCTATTTTTTAAAAATCAACTCATAATCTGATAGATGAGTTGAGCCTCGGGTCGCGCG
66 TTCAATTTCTATTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACG
*
14273919 -CTGAGGTATTTTTCAATTTCTG
131 TC-GAGGTATTTTTCAATTTTTG
* *
14273941 TTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGATATTT
1 TTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAGGTATTT
* **
14274006 TTCAATTTCTGTTTTTCAAAAATTCAACTCATAATATGAGAGGTGAGTTGAGCCTCGGGTCACAC
66 TTCAATTTCTATTTTTCAAAAA-TCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACAC
* * *
14274071 GTTGAGGTATTCTTCAATTTTTA
130 GTCGAGGTATTTTTCAATTTTTG
* * * * *
14274094 TTTTTTAAAAATCAACTCATAATCCGAGAGGTAAGTTGAGCATCGGGTCACAGGCCGAGGTATTT
1 TTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAGGTATTT
* * * *
14274159 TTCCATTTCTATTTTTCAAAAAATCAACTCATAATACGAGAGGAGAGTTGAGCCTCGAGTCACAC
66 TTCAATTTCTATTTTTC-AAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACAC
** *
14274224 ACCGAGGTATTTTT-AATTTTTA
130 GTCGAGGTATTTTTCAATTTTTG
* *
14274246 TTTTTCAAAAATCAACTCATAGTTCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAGGTATTT
1 TTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAGGTATTT
* * *
14274311 TT-AATTTATGTTTTTTAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACG
66 TTCAATTTCTATTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACG
* *
14274375 CCGAGGTA-TTTTCAATTTATG
131 TCGAGGTATTTTTCAATTTTTG
* * * *
14274396 TTTTTTCAAAAATCAACTCATAATCCGAGGGGTGAGTTGAGCCTCGGGTCACACGCCCAGGAATT
1 -TTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAGGTATT
** * * *
14274461 TTTCAATTTCTATTTTTTTTTCAAAAATCAACTCATAATCTTATAGGTGAGTTAAGCCTTGGGTC
65 TTTCAATTTCTA----TTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTC
* * *
14274526 ACATGTCGAGATATTTTTCAATTTCTG
126 ACACGTCGAGGTATTTTTCAATTTTTG
* * ** * *
14274553 TTTTTCAAAAATCAAATCATAATCTGAGAGGTGAGTTGAGCCTCAAGTAGCACGCTGAGGTATTT
1 TTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAGGTATTT
* *
14274618 TT-AATTTCTGTTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCTTCGGGTCACACG
66 TTCAATTTCTATTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACG
14274682 TCGAGGTATTTTTCAATTTTTG
131 TCGAGGTATTTTTCAATTTTTG
* ** **
14274704 TTTTTCAAAAATCAACTCATAATCCGAGAGGTGACTTGAGCCTCGGGTCGTGCGTTGAGGTA-TT
1 TTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAGGTATTT
**
14274768 TTCAATTTCTATTTTTCAATGATCAACTCATAATCCGAGAGGTGAGTTGAGC
66 TTCAATTTCTATTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGC
14274820 TTCGAGTTGT
Statistics
Matches: 769, Mismatches: 98, Indels: 25
0.86 0.11 0.03
Matches are distributed among these distances:
149 4 0.01
150 62 0.08
151 237 0.31
152 153 0.20
153 179 0.23
154 5 0.01
155 7 0.01
156 110 0.14
157 12 0.02
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34
Consensus pattern (152 bp):
TTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAGGTATTT
TTCAATTTCTATTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACG
TCGAGGTATTTTTCAATTTTTG
Found at i:14275198 original size:30 final size:29
Alignment explanation
Indices: 14275162--14275271 Score: 130
Period size: 30 Copynumber: 3.7 Consensus size: 29
14275152 ATACAAAATT
*
14275162 TAAAATTATATTTTGACCCCTTAACTTTTC
1 TAAAATTACATTTTGACCCCTTAA-TTTTC
* * *
14275192 TAAAATTACATTTTAACCCATAAATTTTCC
1 TAAAATTACATTTTGACCCCTTAATTTT-C
* *
14275222 TAAAATTATATTTTGACACCTTAATTTTC
1 TAAAATTACATTTTGACCCCTTAATTTTC
*
14275251 ATAAAATTACATTTTGGCCCC
1 -TAAAATTACATTTTGACCCC
14275272 AGAAGTTTTT
Statistics
Matches: 66, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
29 5 0.08
30 61 0.92
ACGTcount: A:0.35, C:0.19, G:0.04, T:0.43
Consensus pattern (29 bp):
TAAAATTACATTTTGACCCCTTAATTTTC
Found at i:14275746 original size:28 final size:24
Alignment explanation
Indices: 14275709--14275783 Score: 82
Period size: 28 Copynumber: 3.0 Consensus size: 24
14275699 CCTAGGGTTT
14275709 GAAAAGAAGAGGAAAAAGGAAAGAAAG
1 GAAAAGAAGA--AAAAAGGAAA-AAAG
14275736 GAAGAAGAAGAAAAAAAAGG-AAAAAG
1 GAA-AAGAAG--AAAAAAGGAAAAAAG
14275762 GAAAAGAA-AAAAAAGGAAAAAA
1 GAAAAGAAGAAAAAAGGAAAAAA
14275784 ATAAAAAAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 12
0.79 0.00 0.21
Matches are distributed among these distances:
22 8 0.18
23 5 0.11
25 5 0.11
26 7 0.16
27 5 0.11
28 13 0.30
30 1 0.02
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (24 bp):
GAAAAGAAGAAAAAAGGAAAAAAG
Found at i:14275774 original size:15 final size:15
Alignment explanation
Indices: 14275756--14275790 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
14275746 AAAAAAAAGG
14275756 AAAAAGGAAAAGAAA-
1 AAAAAGGAAAA-AAAT
14275771 AAAAAGGAAAAAAAT
1 AAAAAGGAAAAAAAT
14275786 AAAAA
1 AAAAA
14275791 AATAAAGAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 3 0.16
15 16 0.84
ACGTcount: A:0.83, C:0.00, G:0.14, T:0.03
Consensus pattern (15 bp):
AAAAAGGAAAAAAAT
Found at i:14276143 original size:15 final size:15
Alignment explanation
Indices: 14276122--14276157 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
14276112 CAGCAGCAGA
*
14276122 AAAAAAAAGAGAAAAG
1 AAAAAAAGGA-AAAAG
14276138 AAAAAAAGGAAAAAG
1 AAAAAAAGGAAAAAG
14276153 AAAAA
1 AAAAA
14276158 GAGCCCGAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 10 0.53
16 9 0.47
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (15 bp):
AAAAAAAGGAAAAAG
Found at i:14276332 original size:16 final size:16
Alignment explanation
Indices: 14276292--14276333 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
14276282 TTTAAATAGT
*
14276292 TTTTTTAA-TATTTTA
1 TTTTTTAATTTTTTTA
**
14276307 TTTTACAATTTTTTTA
1 TTTTTTAATTTTTTTA
14276323 TTTTTTAATTT
1 TTTTTTAATTT
14276334 AAATAAATTT
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
15 6 0.29
16 15 0.71
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.74
Consensus pattern (16 bp):
TTTTTTAATTTTTTTA
Found at i:14279482 original size:84 final size:83
Alignment explanation
Indices: 14279338--14279675 Score: 345
Period size: 84 Copynumber: 4.1 Consensus size: 83
14279328 ATGAGCACAA
** * * * * * *
14279338 GCATGAGCATGAACGAGTGAGGCATGGTCTTGACAGACAAGTGGTAGGGGTGCCAAGAACCATAA
1 GCATGAGCATGAAC-AGCAAAGCATAGTCTTGACAGACAAATGGTAGAGATGCCAAGAACCTTAA
*
14279403 ATGATAACTTGTATTACAT
65 ATGGTAACTTGTATTACAT
* * * * *
14279422 GTATGAGCATGAACAAGCAAAGCATAGTCTTGACAGACAAAAGGTAGAGGTGCCAGGAACCTTAC
1 GCATGAGCATGAAC-AGCAAAGCATAGTCTTGACAGACAAATGGTAGAGATGCCAAGAACCTTAA
14279487 ATGGTAACTTGTATTACAT
65 ATGGTAACTTGTATTACAT
* * *
14279506 GCATCAGCATG---A--AAA-C--AGTCTTGACAGACGAATGATAGAGATGCCAAGAACCTTAAA
1 GCATGAGCATGAACAGCAAAGCATAGTCTTGACAGACAAATGGTAGAGATGCCAAGAACCTTAAA
*
14279563 TGGTAACTCGTATTACAT
66 TGGTAACTTGTATTACAT
* * * * * *
14279581 GCATGAGCA-CAAGCCAGCGAGGCAT-GTGTTGACAGACAAATGGTAGAGATGCCAAGAGCCTTG
1 GCATGAGCATGAA--CAGCAAAGCATAGTCTTGACAGACAAATGGTAGAGATGCCAAGAACCTTA
*
14279644 AATGGTAACTTGTAGTACAT
64 AATGGTAACTTGTATTACAT
14279664 GCATGAGCATGA
1 GCATGAGCATGA
14279676 GCATGAACTT
Statistics
Matches: 209, Mismatches: 34, Indels: 22
0.79 0.13 0.08
Matches are distributed among these distances:
75 60 0.29
77 1 0.00
78 3 0.01
79 1 0.00
80 1 0.00
81 1 0.00
82 1 0.00
83 60 0.29
84 81 0.39
ACGTcount: A:0.35, C:0.17, G:0.26, T:0.22
Consensus pattern (83 bp):
GCATGAGCATGAACAGCAAAGCATAGTCTTGACAGACAAATGGTAGAGATGCCAAGAACCTTAAA
TGGTAACTTGTATTACAT
Found at i:14279545 original size:75 final size:75
Alignment explanation
Indices: 14279447--14279675 Score: 217
Period size: 75 Copynumber: 2.9 Consensus size: 75
14279437 AGCAAAGCAT
* * * * *
14279447 AGTCTTGACAGACAAAAGGTAGAGGTGCCAGGAACCTTACATGGTAACTTGTATTACATGCATCA
1 AGTCTTGACAGACAAAAGATAGAGATGCCAAGAACCTTAAATGGTAACTCGTATTACATGCATCA
14279512 GCATGAAAAC
66 GCATGAAAAC
* * *
14279522 AGTCTTGACAGACGAATGATAGAGATGCCAAGAACCTTAAATGGTAACTCGTATTACATGCATGA
1 AGTCTTGACAGACAAAAGATAGAGATGCCAAGAACCTTAAATGGTAACTCGTATTACATGCATCA
*
14279587 GCA-CAAGCCAGCGAGGC
66 GCATGAA---A---A--C
* * * * * * * *
14279604 ATGTGTTGACAGACAAATGGTAGAGATGCCAAGAGCCTTGAATGGTAACTTGTAGTACATGCATG
1 A-GTCTTGACAGACAAAAGATAGAGATGCCAAGAACCTTAAATGGTAACTCGTATTACATGCATC
14279669 AGCATGA
65 AGCATGA
14279676 GCATGAACTT
Statistics
Matches: 127, Mismatches: 17, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
74 2 0.02
75 60 0.47
77 1 0.01
80 1 0.01
82 2 0.02
83 60 0.47
84 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (75 bp):
AGTCTTGACAGACAAAAGATAGAGATGCCAAGAACCTTAAATGGTAACTCGTATTACATGCATCA
GCATGAAAAC
Found at i:14279673 original size:158 final size:159
Alignment explanation
Indices: 14279364--14279675 Score: 407
Period size: 159 Copynumber: 2.0 Consensus size: 159
14279354 GTGAGGCATG
* * * * *
14279364 GTCTTGACAGACAAGTGGTAGGGGTGCCAAGAACCATAAATGATAACTTGTATTACATGTATGAG
1 GTCTTGACAGACAAGTGATAGAGATGCCAAGAACCATAAATGATAACTCGTATTACATGCATGAG
* * *
14279429 CATGAACAAGCAAAGCATAGTCTTGACAGACAAAAGGTAGAGGTGCCAGGAACCTTACATGGTAA
66 CATCAACAAGCAAAGCATAGTCTTGACAGACAAAAGGTAGAGATGCCAAGAACCTTACATGGTAA
*
14279494 CTTGTATTACATGCATCAGCATGAAAACA
131 CTTGTAGTACATGCATCAGCATGAAAACA
* *
14279523 GTCTTGACAGACGAA-TGATAGAGATGCCAAGAACCTTAAATGGTAACTCGTATTACATGCATGA
1 GTCTTGACAGAC-AAGTGATAGAGATGCCAAGAACCATAAATGATAACTCGTATTACATGCATGA
* * * * * *
14279587 GCA-CAAGCCAGCGAGGCAT-GTGTTGACAGACAAATGGTAGAGATGCCAAGAGCCTTGA-ATGG
65 GCATCAA-CAAGCAAAGCATAGTCTTGACAGACAAAAGGTAGAGATGCCAAGAACCTT-ACATGG
*
14279649 TAACTTGTAGTACATGCATGAGCATGA
128 TAACTTGTAGTACATGCATCAGCATGA
14279676 GCATGAACTT
Statistics
Matches: 132, Mismatches: 18, Indels: 7
0.84 0.11 0.04
Matches are distributed among these distances:
158 63 0.48
159 67 0.51
160 2 0.02
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (159 bp):
GTCTTGACAGACAAGTGATAGAGATGCCAAGAACCATAAATGATAACTCGTATTACATGCATGAG
CATCAACAAGCAAAGCATAGTCTTGACAGACAAAAGGTAGAGATGCCAAGAACCTTACATGGTAA
CTTGTAGTACATGCATCAGCATGAAAACA
Found at i:14280611 original size:78 final size:78
Alignment explanation
Indices: 14280482--14280642 Score: 304
Period size: 78 Copynumber: 2.1 Consensus size: 78
14280472 GTATTCATGT
14280482 AAGCATACAACTTGTTTAGATGTAGTCAATAATCATATGAATTTAGAATTAGTTAGGCACTAAAC
1 AAGCATACAACTTGTTTAGATGTAGTCAATAATCATATGAATTTAGAATTAGTTAGGCACTAAAC
14280547 ATCAAGTAAAGCA
66 ATCAAGTAAAGCA
* *
14280560 AAGCATGCAACTTGTTTAGATGTAGTCAATAATCATATGAATTTAGAATTAGTTGGGCACTAAAC
1 AAGCATACAACTTGTTTAGATGTAGTCAATAATCATATGAATTTAGAATTAGTTAGGCACTAAAC
14280625 ATCAAGTAAAGCA
66 ATCAAGTAAAGCA
14280638 AAGCA
1 AAGCA
14280643 ACCAAAGATA
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
78 81 1.00
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.29
Consensus pattern (78 bp):
AAGCATACAACTTGTTTAGATGTAGTCAATAATCATATGAATTTAGAATTAGTTAGGCACTAAAC
ATCAAGTAAAGCA
Found at i:14281063 original size:84 final size:84
Alignment explanation
Indices: 14280922--14281080 Score: 246
Period size: 84 Copynumber: 1.9 Consensus size: 84
14280912 TTCATGCTCA
* * *
14280922 TGCTCATGCATGTAGTACAAGTTACCATTCAAGGCTCCTGGCATCTCTACCATTTGTCTGTCAAC
1 TGCTCATGCATGTAATACAAGTTACCATTCAAGGCTCCTGGCACCTCTACCAATTGTCTGTCAAC
*
14280987 ACTATGCCTCGCTGGCTTG
66 ACCATGCCTCGCTGGCTTG
* * * *
14281006 TGCTCATGCATGTAATACGAGTTACCATTCAAGGTTCTTGGCACCTCTACCAATTGTCTGTCAAG
1 TGCTCATGCATGTAATACAAGTTACCATTCAAGGCTCCTGGCACCTCTACCAATTGTCTGTCAAC
14281071 ACCATGCCTC
66 ACCATGCCTC
14281081 AAGCTTCCTA
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
84 67 1.00
ACGTcount: A:0.22, C:0.28, G:0.18, T:0.31
Consensus pattern (84 bp):
TGCTCATGCATGTAATACAAGTTACCATTCAAGGCTCCTGGCACCTCTACCAATTGTCTGTCAAC
ACCATGCCTCGCTGGCTTG
Found at i:14282989 original size:3 final size:3
Alignment explanation
Indices: 14282981--14283011 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
14282971 CTTGAACCTT
14282981 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
14283012 AACAAGTTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:14285367 original size:31 final size:31
Alignment explanation
Indices: 14285302--14285938 Score: 393
Period size: 31 Copynumber: 21.2 Consensus size: 31
14285292 TTTGATTGTT
* * * *
14285302 TTATACATTGCCG-AATTAATTCGTATATAA
1 TTATACATTGCTGAAATTGATTTGTATATGA
* *
14285332 TTATACATTGCTGAAATTTATTTGTATATGG
1 TTATACATTGCTGAAATTGATTTGTATATGA
*
14285363 TTATACATT-ATCGAAATTGATTTGTATATGA
1 TTATACATTGCT-GAAATTGATTTGTATATGA
** * * *
14285394 AGATA-AGTTGCTG-AACTGATTCGTATATAA
1 TTATACA-TTGCTGAAATTGATTTGTATATGA
*
14285424 TTATACATTGCTGAAACTT-ATTTGTATATGG
1 TTATACATTGCTGAAA-TTGATTTGTATATGA
* *
14285455 TTATACATT-ATCGAAATTGATTTGCATATGA
1 TTATACATTGCT-GAAATTGATTTGTATATGA
** *
14285486 AGATA-AGTTGC-CAAATTGATTTGTATATGA
1 TTATACA-TTGCTGAAATTGATTTGTATATGA
* * *
14285516 TTATACTTTGCTGAAATTAATTTGTATATGG
1 TTATACATTGCTGAAATTGATTTGTATATGA
* * *
14285547 TTACACATTGTTGAAATTGAATTGTATATGGA
1 TTATACATTGCTGAAATTGATTTGTATAT-GA
*
14285579 -TATA-AGTTGCCG-AATT-A-----AT-TCG-
1 TTATACA-TTGCTGAAATTGATTTGTATAT-GA
* *
14285601 -TATA--TTGCTGAAATTTATTTGTATATGG
1 TTATACATTGCTGAAATTGATTTGTATATGA
*
14285629 TTATACATT-ATCGAAATTGATTTGTATATGA
1 TTATACATTGCT-GAAATTGATTTGTATATGA
** * *
14285660 AGATA-AGTTGC-CAAATTGATTCGTATATGA
1 TTATACA-TTGCTGAAATTGATTTGTATATGA
* * *
14285690 TTATACTTTGATGAAATTAATTTGTATATG-
1 TTATACATTGCTGAAATTGATTTGTATATGA
* ** *
14285720 GTATACATTATTGAAATTGAATTGTATATGGA
1 TTATACATTGCTGAAATTGATTTGTATAT-GA
* * *
14285752 -TATA-AGTTGCTG-AATTAATTCGTACATGA
1 TTATACA-TTGCTGAAATTGATTTGTATATGA
* * * * *
14285781 TTATACATTGCCGAACTTGATTTATATCTGG
1 TTATACATTGCTGAAATTGATTTGTATATGA
* * *
14285812 TTATACATTGC-CAAATTAATTCGTATATGA
1 TTATACATTGCTGAAATTGATTTGTATATGA
* * * ** *
14285842 TTATACATTGCCGAACTTTATTCATATATGG
1 TTATACATTGCTGAAATTGATTTGTATATGA
*
14285873 TTATACATTGC-CAAATTGATTTGTATATGA
1 TTATACATTGCTGAAATTGATTTGTATATGA
* *
14285903 TTATACATTG-TCGAATTTGATTCGTATATGA
1 TTATACATTGCT-GAAATTGATTTGTATATGA
*
14285934 ATATA
1 TTATA
14285939 TATATGGTTG
Statistics
Matches: 464, Mismatches: 102, Indels: 81
0.72 0.16 0.13
Matches are distributed among these distances:
20 5 0.01
21 4 0.01
22 5 0.01
23 2 0.00
24 2 0.00
27 3 0.01
28 1 0.00
29 7 0.02
30 185 0.40
31 247 0.53
32 3 0.01
ACGTcount: A:0.33, C:0.09, G:0.16, T:0.42
Consensus pattern (31 bp):
TTATACATTGCTGAAATTGATTTGTATATGA
Found at i:14285370 original size:61 final size:61
Alignment explanation
Indices: 14285302--14285938 Score: 388
Period size: 61 Copynumber: 10.6 Consensus size: 61
14285292 TTTGATTGTT
* * * * *
14285302 TTATACATTGCCGAATTAATTCGTATATAATTATACATTGCTGAAATTTATTTGTATATGG
1 TTATACATTGCCGAATTGATTTGTATATGATTATACATTGCTGAAATTAATTTGTATATGA
** ** * * * *
14285363 TTATACATTATCGAAATTGATTTGTATATGAAGATA-AGTTGCTG-AACTGATTCGTATATAA
1 TTATACATTGCCG-AATTGATTTGTATATGATTATACA-TTGCTGAAATTAATTTGTATATGA
* * * * *
14285424 TTATACATTGCTGAAACTT-ATTTGTATATGGTTATACATT-ATCGAAATTGATTTGCATATGA
1 TTATACATTGCCG-AA-TTGATTTGTATATGATTATACATTGCT-GAAATTAATTTGTATATGA
** * * *
14285486 AGATA-AGTTGCCAAATTGATTTGTATATGATTATACTTTGCTGAAATTAATTTGTATATGG
1 TTATACA-TTGCCGAATTGATTTGTATATGATTATACATTGCTGAAATTAATTTGTATATGA
* ** * * *
14285547 TTACACATTGTTGAAATTGAATTGTATATGGA-TATA-AGTTGCCG-AATTAATTCG--TAT-A
1 TTATACATTGCCG-AATTGATTTGTATAT-GATTATACA-TTGCTGAAATTAATTTGTATATGA
* * * * * *
14285605 -T-TGC--TG--AAATTTATTTGTATATGGTTATACATT-ATCGAAATTGATTTGTATATGA
1 TTATACATTGCCGAATTGATTTGTATATGATTATACATTGCT-GAAATTAATTTGTATATGA
** * * * *
14285660 AGATA-AGTTGCCAAATTGATTCGTATATGATTATACTTTGATGAAATTAATTTGTATATG-
1 TTATACA-TTGCCGAATTGATTTGTATATGATTATACATTGCTGAAATTAATTTGTATATGA
* *** * * *
14285720 GTATACATTATTGAAATTGAATTGTATATGGA-TATA-AGTTGCTG-AATTAATTCGTACATGA
1 TTATACATTGCCG-AATTGATTTGTATAT-GATTATACA-TTGCTGAAATTAATTTGTATATGA
* * * * *
14285781 TTATACATTGCCGAACTTGATTTATATCTGGTTATACATTGC-CAAATTAATTCGTATATGA
1 TTATACATTGCCGAA-TTGATTTGTATATGATTATACATTGCTGAAATTAATTTGTATATGA
* ** * * *
14285842 TTATACATTGCCGAACTTTATTCATATATGGTTATACATTGC-CAAATTGATTTGTATATGA
1 TTATACATTGCCGAA-TTGATTTGTATATGATTATACATTGCTGAAATTAATTTGTATATGA
* * *
14285903 TTATACATTGTCGAATTTGATTCGTATATGAATATA
1 TTATACATTGCCGAA-TTGATTTGTATATGATTATA
14285939 TATATGGTTG
Statistics
Matches: 445, Mismatches: 94, Indels: 74
0.73 0.15 0.12
Matches are distributed among these distances:
50 1 0.00
51 20 0.04
52 9 0.02
54 5 0.01
55 1 0.00
56 1 0.00
57 2 0.00
59 5 0.01
60 25 0.06
61 298 0.67
62 76 0.17
63 2 0.00
ACGTcount: A:0.33, C:0.09, G:0.16, T:0.42
Consensus pattern (61 bp):
TTATACATTGCCGAATTGATTTGTATATGATTATACATTGCTGAAATTAATTTGTATATGA
Found at i:14285417 original size:92 final size:92
Alignment explanation
Indices: 14285309--14285934 Score: 695
Period size: 92 Copynumber: 6.9 Consensus size: 92
14285299 GTTTTATACA
* *
14285309 TTGCCGAATTAATTCGTATATAATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTAT
1 TTGCCGAATTGATTCGTATATGATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTAT
14285374 CGAAATTGATTTGTATATGAAGATAAG
66 CGAAATTGATTTGTATATGAAGATAAG
* * * *
14285401 TTGCTGAACTGATTCGTATATAATTATACATTGCTGAAACTTATTTGTATATGGTTATACATTAT
1 TTGCCGAATTGATTCGTATATGATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTAT
*
14285466 CGAAATTGATTTGCATATGAAGATAAG
66 CGAAATTGATTTGTATATGAAGATAAG
* * * * * *
14285493 TTGCCAAATTGATTTGTATATGATTATACTTTGCTGAAATTAATTTGTATATGGTTACACATTGT
1 TTGCCGAATTGATTCGTATATGATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTAT
* * * *
14285558 TGAAATTGAATTGTATATGGATATAAG
66 CGAAATTGATTTGTATATGAAGATAAG
*
14285585 TTGCCGAATTAATTC------G--TAT--ATTGCTGAAATTTATTTGTATATGGTTATACATTAT
1 TTGCCGAATTGATTCGTATATGATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTAT
14285640 CGAAATTGATTTGTATATGAAGATAAG
66 CGAAATTGATTTGTATATGAAGATAAG
* * * *
14285667 TTGCCAAATTGATTCGTATATGATTATACTTTGATGAAATTAATTTGTATATGG-TATACATTAT
1 TTGCCGAATTGATTCGTATATGATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTAT
* * * *
14285731 TGAAATTGAATTGTATATGGATATAAG
66 CGAAATTGATTTGTATATGAAGATAAG
* * * * * * * * *
14285758 TTGCTGAATTAATTCGTACATGATTATACATTGCCGAACTTGATTTATATCTGGTTATACATT-G
1 TTGCCGAATTGATTCGTATATGATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTAT
* * * **
14285822 CCAAATTAATTCGTATATGATTATACA-
66 CGAAATTGATTTGTATATGAAGATA-AG
* * * * * * *
14285849 TTGCCGAACTTTATTCATATATGGTTATACATTGC-CAAATTGATTTGTATATGATTATACATTG
1 TTGCCGAA-TTGATTCGTATATGATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTA
* *
14285913 TCGAATTTGATTCGTATATGAA
65 TCGAAATTGATTTGTATATGAA
14285935 TATATATATG
Statistics
Matches: 446, Mismatches: 74, Indels: 28
0.81 0.14 0.05
Matches are distributed among these distances:
82 68 0.15
84 3 0.01
86 1 0.00
88 1 0.00
90 3 0.01
91 124 0.28
92 246 0.55
ACGTcount: A:0.33, C:0.09, G:0.16, T:0.42
Consensus pattern (92 bp):
TTGCCGAATTGATTCGTATATGATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTAT
CGAAATTGATTTGTATATGAAGATAAG
Found at i:14285666 original size:82 final size:83
Alignment explanation
Indices: 14285517--14285775 Score: 315
Period size: 82 Copynumber: 3.0 Consensus size: 83
14285507 TGTATATGAT
* *
14285517 TATACTTTGCTGAAATTAATTTGTATATGGTTACACATTGTTGAAATTGAATTGTATATGGATAT
1 TATAC-TTGCTGAAATTAATTTGTATATGGTTATACATTATTGAAATTGAATTGTATATGGATAT
14285582 AAGTTGCCGAATTAATTCG
65 AAGTTGCCGAATTAATTCG
* * * * *
14285601 TATA-TTGCTGAAATTTATTTGTATATGGTTATACATTATCGAAATTGATTTGTATATGAAGATA
1 TATACTTGCTGAAATTAATTTGTATATGGTTATACATTATTGAAATTGAATTGTATATGGATATA
* *
14285665 AGTTGCCAAATTGATTCGTATATG
66 AGTTGCCGAATTAATTC------G
*
14285689 ATTATACTTTGATGAAATTAATTTGTATATGG-TATACATTATTGAAATTGAATTGTATATGGAT
1 --TATAC-TTGCTGAAATTAATTTGTATATGGTTATACATTATTGAAATTGAATTGTATATGGAT
*
14285753 ATAAGTTGCTGAATTAATTCG
63 ATAAGTTGCCGAATTAATTCG
14285774 TA
1 TA
14285776 CATGATTATA
Statistics
Matches: 147, Mismatches: 18, Indels: 21
0.79 0.10 0.11
Matches are distributed among these distances:
82 68 0.46
83 2 0.01
84 4 0.03
85 1 0.01
88 1 0.01
90 4 0.03
91 45 0.31
92 22 0.15
ACGTcount: A:0.34, C:0.07, G:0.17, T:0.43
Consensus pattern (83 bp):
TATACTTGCTGAAATTAATTTGTATATGGTTATACATTATTGAAATTGAATTGTATATGGATATA
AGTTGCCGAATTAATTCG
Found at i:14285720 original size:174 final size:173
Alignment explanation
Indices: 14285430--14285775 Score: 620
Period size: 174 Copynumber: 2.0 Consensus size: 173
14285420 ATAATTATAC
14285430 ATTGCTGAAACTTATTTGTATATGGTTATACATTATCGAAATTGATTTGCATATGAAGATAAGTT
1 ATTGCTGAAACTTATTTGTATATGGTTATACATTATCGAAATTGATTTGCATATGAAGATAAGTT
* * *
14285495 GCCAAATTGATTTGTATATGATTATACTTTGCTGAAATTAATTTGTATATGGTTACACATTGTTG
66 GCCAAATTGATTCGTATATGATTATACTTTGATGAAATTAATTTGTATATGG-TACACATTATTG
14285560 AAATTGAATTGTATATGGATATAAGTTGCCGAATTAATTCGTAT
130 AAATTGAATTGTATATGGATATAAGTTGCCGAATTAATTCGTAT
* *
14285604 ATTGCTGAAATTTATTTGTATATGGTTATACATTATCGAAATTGATTTGTATATGAAGATAAGTT
1 ATTGCTGAAACTTATTTGTATATGGTTATACATTATCGAAATTGATTTGCATATGAAGATAAGTT
*
14285669 GCCAAATTGATTCGTATATGATTATACTTTGATGAAATTAATTTGTATATGGTATACATTATTGA
66 GCCAAATTGATTCGTATATGATTATACTTTGATGAAATTAATTTGTATATGGTACACATTATTGA
*
14285734 AATTGAATTGTATATGGATATAAGTTGCTGAATTAATTCGTA
131 AATTGAATTGTATATGGATATAAGTTGCCGAATTAATTCGTA
14285776 CATGATTATA
Statistics
Matches: 165, Mismatches: 7, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
173 52 0.32
174 113 0.68
ACGTcount: A:0.34, C:0.07, G:0.17, T:0.42
Consensus pattern (173 bp):
ATTGCTGAAACTTATTTGTATATGGTTATACATTATCGAAATTGATTTGCATATGAAGATAAGTT
GCCAAATTGATTCGTATATGATTATACTTTGATGAAATTAATTTGTATATGGTACACATTATTGA
AATTGAATTGTATATGGATATAAGTTGCCGAATTAATTCGTAT
Found at i:14285773 original size:91 final size:92
Alignment explanation
Indices: 14285609--14285934 Score: 286
Period size: 91 Copynumber: 3.6 Consensus size: 92
14285599 CGTATATTGC
* *
14285609 TGAAATTTATTTGTATATGGTTATACATTATCGAAATTGATTTGTATATGAAGATAAGTTGCCAA
1 TGAAATTAATTTGTATATGGTTATACATTATCGAAATTGAATTGTATATGAAGATAAGTTGCCAA
* *
14285674 ATTGATTCGTATATGATTATACTTTGA
66 ATTAATTCGTACATGATTATACTTTGA
* * * **
14285701 TGAAATTAATTTGTATATGG-TATACATTATTGAAATTGAATTGTATATGGATATAAGTTGCTGA
1 TGAAATTAATTTGTATATGGTTATACATTATCGAAATTGAATTGTATATGAAGATAAGTTGCCAA
* *
14285765 ATTAATTCGTACATGATTATACATTGC
66 ATTAATTCGTACATGATTATACTTTGA
* * * * * * * **
14285792 CGAACTTGATTTATATCTGGTTATACATT-GCCAAATT-AATTCGTATATGATTATACA-TTGCC
1 TGAAATTAATTTGTATATGGTTATACATTATCGAAATTGAATT-GTATATGAAGATA-AGTTGCC
* * * * * *
14285854 GAACTTTATTCATATATGGTTATACATTG-
64 -AAATTAATTCGTACATGATTATACTTTGA
** * * * *
14285883 CCAAATTGATTTGTATATGATTATACATTGTCGAATTTG-ATTCGTATATGAA
1 TGAAATTAATTTGTATATGGTTATACATTATCGAAATTGAATT-GTATATGAA
14285935 TATATATATG
Statistics
Matches: 191, Mismatches: 37, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
90 4 0.02
91 120 0.63
92 67 0.35
ACGTcount: A:0.33, C:0.09, G:0.15, T:0.42
Consensus pattern (92 bp):
TGAAATTAATTTGTATATGGTTATACATTATCGAAATTGAATTGTATATGAAGATAAGTTGCCAA
ATTAATTCGTACATGATTATACTTTGA
Found at i:14287596 original size:3 final size:3
Alignment explanation
Indices: 14287588--14287636 Score: 89
Period size: 3 Copynumber: 16.3 Consensus size: 3
14287578 GTAGACGAGG
*
14287588 ATA ATA ATA ATA ATA ATA ATA ATA ATG ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
14287636 A
1 A
14287637 AGCGGGTGGT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:14287791 original size:15 final size:14
Alignment explanation
Indices: 14287767--14287814 Score: 51
Period size: 15 Copynumber: 3.3 Consensus size: 14
14287757 GAAATTTTAA
14287767 ATATTAATTTATGAT
1 ATATTAATTT-TGAT
*
14287782 ATATTCATTTTGAT
1 ATATTAATTTTGAT
* *
14287796 AAAATTAAATTTGAT
1 -ATATTAATTTTGAT
14287811 ATAT
1 ATAT
14287815 ATACACAAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
14 7 0.26
15 20 0.74
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.50
Consensus pattern (14 bp):
ATATTAATTTTGAT
Found at i:14289715 original size:30 final size:30
Alignment explanation
Indices: 14289626--14289718 Score: 125
Period size: 30 Copynumber: 3.1 Consensus size: 30
14289616 ATACAAAATT
* * *
14289626 TAAAATTACATTTTAACCCCTTAACTTTCT
1 TAAAATTACATTTTGACCCCTTAATTTTCC
*
14289656 TAAAATTATATTTTGA-CCCTTAAATTTTCC
1 TAAAATTACATTTTGACCCCTT-AATTTTCC
*
14289686 TAAAATTACATATTGACCCCTTAATTTTCC
1 TAAAATTACATTTTGACCCCTTAATTTTCC
14289716 TAA
1 TAA
14289719 CCTTTTAACC
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
29 5 0.09
30 45 0.82
31 5 0.09
ACGTcount: A:0.34, C:0.20, G:0.02, T:0.43
Consensus pattern (30 bp):
TAAAATTACATTTTGACCCCTTAATTTTCC
Found at i:14298304 original size:29 final size:29
Alignment explanation
Indices: 14298262--14298341 Score: 160
Period size: 29 Copynumber: 2.8 Consensus size: 29
14298252 TTACCTCAAA
14298262 TTACATTTTAGTCACTTATGTTTAAAATG
1 TTACATTTTAGTCACTTATGTTTAAAATG
14298291 TTACATTTTAGTCACTTATGTTTAAAATG
1 TTACATTTTAGTCACTTATGTTTAAAATG
14298320 TTACATTTTAGTCACTTATGTT
1 TTACATTTTAGTCACTTATGTT
14298342 ATCGTTTTGT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 51 1.00
ACGTcount: A:0.29, C:0.11, G:0.10, T:0.50
Consensus pattern (29 bp):
TTACATTTTAGTCACTTATGTTTAAAATG
Found at i:14304851 original size:23 final size:23
Alignment explanation
Indices: 14304822--14304982 Score: 116
Period size: 23 Copynumber: 7.0 Consensus size: 23
14304812 CTATCATCCA
*
14304822 CCAAACACAACCA-ATCATAGCCT
1 CCAAACACAACCACAT-ATACCCT
* *
14304845 CTAAACACAAACA-AGT-TACCCT
1 CCAAACACAACCACA-TATACCCT
*
14304867 CCAAACACAACCATATATACCCT
1 CCAAACACAACCACATATACCCT
* *
14304890 CCGAACACAACCACATTTACCCT
1 CCAAACACAACCACATATACCCT
* *
14304913 CCAAACACAACCATATATGTAACCT
1 CCAAACACAACCACATA--TACCCT
*** * * *
14304938 TTGAACACAAGCA-AGCATACCGT
1 CCAAACACAACCACA-TATACCCT
14304961 CCAAACACAACCA-ATATACCCT
1 CCAAACACAACCACATATACCCT
14304983 TCAACATATC
Statistics
Matches: 107, Mismatches: 25, Indels: 13
0.74 0.17 0.09
Matches are distributed among these distances:
22 23 0.21
23 67 0.63
24 2 0.02
25 15 0.14
ACGTcount: A:0.42, C:0.36, G:0.05, T:0.17
Consensus pattern (23 bp):
CCAAACACAACCACATATACCCT
Found at i:14304965 original size:48 final size:45
Alignment explanation
Indices: 14304822--14304978 Score: 142
Period size: 48 Copynumber: 3.4 Consensus size: 45
14304812 CTATCATCCA
* ** *
14304822 CCAAACACAACCA-ATCATAGCCTCTAAACACAAACAAG-TTACCCT
1 CCAAACACAACCATAT-ATAACCTCCGAACAC-AACAAGCATACCCT
* *
14304867 CCAAACACAACCATATATACCCTCCGAACACAACCA-CATTTACCCT
1 CCAAACACAACCATATATAACCTCCGAACACAACAAGCA--TACCCT
** *
14304913 CCAAACACAACCATATATGTAACCTTTGAACACAAGCAAGCATACCGT
1 CCAAACACAACCATATA--TAACCTCCGAACACAA-CAAGCATACCCT
14304961 CCAAACACAACCA-ATATA
1 CCAAACACAACCATATATA
14304979 CCCTTCAACA
Statistics
Matches: 94, Mismatches: 10, Indels: 16
0.78 0.08 0.13
Matches are distributed among these distances:
44 4 0.04
45 27 0.29
46 25 0.27
47 3 0.03
48 31 0.33
49 2 0.02
50 2 0.02
ACGTcount: A:0.43, C:0.35, G:0.05, T:0.17
Consensus pattern (45 bp):
CCAAACACAACCATATATAACCTCCGAACACAACAAGCATACCCT
Found at i:14309089 original size:18 final size:18
Alignment explanation
Indices: 14309045--14309089 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
14309035 CATTCGTTTC
*
14309045 CAAAACATTATTCATTTA
1 CAAAACGTTATTCATTTA
*
14309063 CAAATCGTTATTCAATTT-
1 CAAAACGTTATTC-ATTTA
14309081 CAAAACGTT
1 CAAAACGTT
14309090 TTCTTATTGC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 19 0.83
19 4 0.17
ACGTcount: A:0.40, C:0.18, G:0.04, T:0.38
Consensus pattern (18 bp):
CAAAACGTTATTCATTTA
Found at i:14313026 original size:22 final size:22
Alignment explanation
Indices: 14313002--14313079 Score: 70
Period size: 22 Copynumber: 3.4 Consensus size: 22
14312992 CACTAATGAA
14313002 CAGAGAGCATTAAAGTGCTATA-
1 CAGAGAGCA-TAAAGTGCTATAC
*
14313024 CAGAGAGCACAAACGTGCTA-AC
1 CAGAGAGCATAAA-GTGCTATAC
* *
14313046 CAGAGAGCACTAACGTGCTAGTAAT
1 CAGAGAGCA-TAAAGTGCTA-T-AC
14313071 CAGAGAGCA
1 CAGAGAGCA
14313080 GCAACGTGCT
Statistics
Matches: 46, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
21 4 0.09
22 30 0.65
23 2 0.04
25 10 0.22
ACGTcount: A:0.40, C:0.21, G:0.24, T:0.15
Consensus pattern (22 bp):
CAGAGAGCATAAAGTGCTATAC
Found at i:14313079 original size:25 final size:24
Alignment explanation
Indices: 14313002--14313105 Score: 110
Period size: 25 Copynumber: 4.4 Consensus size: 24
14312992 CACTAATGAA
* *
14313002 CAGAGAGCATTAAAGTGCTAT-A-
1 CAGAGAGCACTAACGTGCTATAAT
* *
14313024 CAGAGAGCACAAACGTGC--TAAC
1 CAGAGAGCACTAACGTGCTATAAT
14313046 CAGAGAGCACTAACGTGCTAGTAAT
1 CAGAGAGCACTAACGTGCTA-TAAT
14313071 CAGAGAGCAGC-AACGTGCTAATAAT
1 CAGAGAGCA-CTAACGTGCT-ATAAT
14313096 CAGAGAGCAC
1 CAGAGAGCAC
14313106 GCTAAAGTTC
Statistics
Matches: 70, Mismatches: 5, Indels: 12
0.80 0.06 0.14
Matches are distributed among these distances:
20 1 0.01
21 1 0.01
22 32 0.46
24 1 0.01
25 33 0.47
26 2 0.03
ACGTcount: A:0.39, C:0.21, G:0.24, T:0.15
Consensus pattern (24 bp):
CAGAGAGCACTAACGTGCTATAAT
Found at i:14313087 original size:47 final size:44
Alignment explanation
Indices: 14313002--14313091 Score: 119
Period size: 47 Copynumber: 2.0 Consensus size: 44
14312992 CACTAATGAA
*
14313002 CAGAGAGCATTAAAGTGCTATACAGAGAGCACAAACGTGCTAAC
1 CAGAGAGCACTAAAGTGCTATACAGAGAGCACAAACGTGCTAAC
*
14313046 CAGAGAGCACTAACGTGCTAGTAATCAGAGAGCAGC-AACGTGCTAA
1 CAGAGAGCACTAAAGTGCTA-T-A-CAGAGAGCA-CAAACGTGCTAA
14313092 TAATCAGAGA
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
44 18 0.45
45 1 0.03
46 1 0.03
47 19 0.47
48 1 0.03
ACGTcount: A:0.39, C:0.21, G:0.24, T:0.16
Consensus pattern (44 bp):
CAGAGAGCACTAAAGTGCTATACAGAGAGCACAAACGTGCTAAC
Found at i:14315807 original size:21 final size:21
Alignment explanation
Indices: 14315783--14315837 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
14315773 GTGGGGATCA
14315783 ACACGCCCATATGAGCGAGGC
1 ACACGCCCATATGAGCGAGGC
* *
14315804 ACACGCCCGTATGAGGGAGGC
1 ACACGCCCATATGAGCGAGGC
* *
14315825 ACAGGGCCATATG
1 ACACGCCCATATG
14315838 TAGGTGACAC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.27, C:0.29, G:0.33, T:0.11
Consensus pattern (21 bp):
ACACGCCCATATGAGCGAGGC
Found at i:14317663 original size:46 final size:45
Alignment explanation
Indices: 14317593--14317731 Score: 197
Period size: 46 Copynumber: 3.0 Consensus size: 45
14317583 AAAATGCTAT
* *
14317593 AACTCAGTATGGTTTTCTTCACTGAAATACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTT-ACTGAAATACCATACCTACGTTACAC
14317639 AACTCAGTATGGTTTTCGTTACTGAAATACCATACCTACGTTACAC
1 AACTCAGTATGGTTTTC-TTACTGAAATACCATACCTACGTTACAC
* * * *
14317685 AACTTAGTATGGTTTTCTTTATTGAATTACCATACCTACGTTCCAC
1 AACTCAGTATGGTTTTC-TTACTGAAATACCATACCTACGTTACAC
14317731 A
1 A
14317732 CTTTGCCATG
Statistics
Matches: 85, Mismatches: 7, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
46 83 0.98
47 2 0.02
ACGTcount: A:0.29, C:0.24, G:0.11, T:0.37
Consensus pattern (45 bp):
AACTCAGTATGGTTTTCTTACTGAAATACCATACCTACGTTACAC
Found at i:14319248 original size:22 final size:21
Alignment explanation
Indices: 14319217--14319271 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 21
14319207 CAATAGGCTA
*
14319217 GTCTCAAGACAATTTGCT-ATAT
1 GTCTCGAGACAATTT-CTCAT-T
14319239 GTCTCGAGACAATTTCTCGATT
1 GTCTCGAGACAATTTCTC-ATT
14319261 GTCTCGAGACA
1 GTCTCGAGACA
14319272 GGGCTCCCTT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
21 2 0.07
22 26 0.87
23 2 0.07
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (21 bp):
GTCTCGAGACAATTTCTCATT
Found at i:14321755 original size:21 final size:21
Alignment explanation
Indices: 14321729--14321788 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 21
14321719 GTGTGAAAGG
14321729 AGGCACATAGCCGTGTGA-CTA
1 AGGCACAT-GCCGTGTGACCTA
14321750 AGGCACATGCCCGTGTGACCTA
1 AGGCACATG-CCGTGTGACCTA
*
14321772 AGG-ACATGGTCGTGTGA
1 AGGCACAT-GCCGTGTGA
14321789 TCAGGCCATG
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
20 1 0.03
21 27 0.77
22 7 0.20
ACGTcount: A:0.25, C:0.23, G:0.32, T:0.20
Consensus pattern (21 bp):
AGGCACATGCCGTGTGACCTA
Found at i:14325326 original size:28 final size:29
Alignment explanation
Indices: 14325281--14325335 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
14325271 ATCTTTCATT
* *
14325281 TTAATTTAATTATTTTTTATTTTATAAAC
1 TTAATTTAATTATGTTTTATATTATAAAC
*
14325310 TTAA-TTACTTATGTTTTATATTATAA
1 TTAATTTAATTATGTTTTATATTATAA
14325336 CATATATACT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 19 0.83
29 4 0.17
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.60
Consensus pattern (29 bp):
TTAATTTAATTATGTTTTATATTATAAAC
Found at i:14325564 original size:13 final size:13
Alignment explanation
Indices: 14325546--14325580 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
14325536 ATAAAATCGT
14325546 AAATATTTAATAA
1 AAATATTTAATAA
14325559 AAATATTTAATAA
1 AAATATTTAATAA
14325572 AAATATTTA
1 AAATATTTA
14325581 CGAGCTAGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
AAATATTTAATAA
Found at i:14352491 original size:2 final size:2
Alignment explanation
Indices: 14352484--14352508 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
14352474 ATGAGTTTGA
14352484 CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT C
14352509 AGGGATCTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:14358787 original size:118 final size:119
Alignment explanation
Indices: 14358612--14358856 Score: 458
Period size: 118 Copynumber: 2.1 Consensus size: 119
14358602 CTATTTTCGT
14358612 ATTTTATTATTTTACATTATTTTAGTACATTATTTTTGAAATGTATTCATTTAGTTTGATTTTTA
1 ATTTTATTATTTTACATTATTTTAGTACATTATTTTTGAAATGTATTCATTTAGTTTGATTTTTA
14358677 AATAAA-TT-AAAAAAACCCTTATTTTGGCCCTTTGTTCGTATCTTTTTTCCCGG
66 AATAAATTTAAAAAAAACCCTTATTTTGGCCCTTTGTTCGTAT-TTTTTTCCCGG
14358730 ATTTTATTATTTTACATTATTTTAGTACATTATTTTTGAAATGTATTCATTTAGTTTGATTTTTA
1 ATTTTATTATTTTACATTATTTTAGTACATTATTTTTGAAATGTATTCATTTAGTTTGATTTTTA
*
14358795 AATAAATTTAAAAAAAACCCTTATTTTGGCCCTTTGTTCGTATTTTTTTTCCGG
66 AATAAATTTAAAAAAAACCCTTATTTTGGCCCTTTGTTCGTATTTTTTTCCCGG
14358849 ATTTTATT
1 ATTTTATT
14358857 TCTTTCAATA
Statistics
Matches: 124, Mismatches: 1, Indels: 3
0.97 0.01 0.02
Matches are distributed among these distances:
118 71 0.57
119 20 0.16
120 33 0.27
ACGTcount: A:0.27, C:0.11, G:0.09, T:0.53
Consensus pattern (119 bp):
ATTTTATTATTTTACATTATTTTAGTACATTATTTTTGAAATGTATTCATTTAGTTTGATTTTTA
AATAAATTTAAAAAAAACCCTTATTTTGGCCCTTTGTTCGTATTTTTTTCCCGG
Found at i:14358906 original size:155 final size:153
Alignment explanation
Indices: 14358730--14359116 Score: 589
Period size: 155 Copynumber: 2.5 Consensus size: 153
14358720 TTTTTCCCGG
* * * * *
14358730 ATTTTATTATTTTACATTATTTTAGTACATTATTTTTGAAATGTATTCATTTAGTTTGATTTTTA
1 ATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTACTGTGTTTTTTA
* * * *
14358795 AATAAATTTAAAAAAAACCCTTATTTTGGCCCTTTGTTCGTATTTTTTT-TCCGGATTTTATTTC
66 AATAAATTTAAAAAAAACCCTTATTTCGGCCATTTGTTCGTATTTTTTTCT-CAGATTTTATTAC
14358859 TTTCAATAAAAATATATTATTTTTGC
130 TTT-AA-AAAAATATATTATTTTTGC
14358885 ATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTACTGTGTTTTTTA
1 ATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTACTGTGTTTTTTA
*
14358950 AATAAAATTTTTAAAAAAACCCTTATTTCGGCCATTTGTTCGTATTTTTTTCTCAGATTTTATTA
66 AAT-AAA-TTTAAAAAAAACCCTTATTTCGGCCATTTGTTCGTATTTTTTTCTCAGATTTTATTA
* *
14359015 CTTTTAAAAAATATATTATTTTTGT
129 CTTTAAAAAAATATATTATTTTTGC
* *
14359040 ATTTTATTATTTTACACTATTTTAGTACATCATGTTTGAAATGTATTAATTTACTGTGTTTTTTA
1 ATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTACTGTGTTTTTTA
14359105 AATAAA-TTAAAA
66 AATAAATTTAAAA
14359117 GTAATAAAAT
Statistics
Matches: 214, Mismatches: 15, Indels: 9
0.90 0.06 0.04
Matches are distributed among these distances:
152 5 0.02
154 3 0.01
155 147 0.69
156 4 0.02
157 54 0.25
158 1 0.00
ACGTcount: A:0.31, C:0.09, G:0.08, T:0.53
Consensus pattern (153 bp):
ATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTACTGTGTTTTTTA
AATAAATTTAAAAAAAACCCTTATTTCGGCCATTTGTTCGTATTTTTTTCTCAGATTTTATTACT
TTAAAAAAATATATTATTTTTGC
Found at i:14359299 original size:154 final size:152
Alignment explanation
Indices: 14359114--14359914 Score: 1209
Period size: 153 Copynumber: 5.2 Consensus size: 152
14359104 AAATAAATTA
*
14359114 AAAGTAATAAAATCCGAGAAAAAAATACGAACAAATGGCCGAAATAAGGGTTTTTTTAAAATTTA
1 AAAGTAATAAAATCCGAGAAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTT-AAATTTA
*
14359179 TTTAAAAAACACACTAAATAAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAA
65 TTTAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAA
*
14359244 ATTAGAAAATAGTATATTTTTTT
130 ATTAGAAAATAATATATTTTTTT
* *
14359267 AAAGTAATAAAATCCGGAGAAAAAAATACGAACAAATGGCAGAAATAA-GGTTTTTTT-AATTTA
1 AAAGTAATAAAATCC-GAGAAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTTAAATTTA
* *
14359330 TTTAAAAAAACACATTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAA
65 TTT-AAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAA
* *
14359395 AATGAAAAAATAATATATTTTTATT
129 AATTAGAAAATAATATATTTTT-TT
* *
14359420 GAAAGAAATAAAATTCG-GAAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTTTTAAATT
1 -AAAGTAATAAAATCCGAGAAAAAAATACGAACAAAGGGCCGAAATAAGGG--TTTTTTTAAATT
* *
14359484 TATTTAAAACACACACTAAATGAATACATTTCAAAAATAATGTACTAAAATAATGTAAAATAATA
63 TATTTAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATA
*
14359549 AAATTAGAAAATAATATATTGTTTT
128 AAATTAGAAAATAATATATTTTTTT
* * *
14359574 AAAGTAATAAAATCCG-GGAAAAAATACGAACAAAAGGCCGAAATAAGAGTTTTTTTTAAAATTT
1 AAAGTAATAAAATCCGAGAAAAAAATACGAACAAAGGGCCGAAATAAG-GGTTTTTTT-AAATTT
* *
14359638 ATTTTAAAAAACACAGTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATA
64 A-TTTAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATA
* *
14359703 AAATAAGAAAAGAATATATTTTTATT
128 AAATTAGAAAATAATATATTTTT-TT
*
14359729 GAAAGTAATAAAATTCGA-AAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTTAAATTTA
1 -AAAGTAATAAAATCCGAGAAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTTAAATTTA
* * *
14359793 TTTAAAAATCAAACTAAATGAATACATTTCAAAAATAATGTACTAAAATAATGTAAAATAATAAA
65 TTTAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAA
14359858 ATTAGAAAATAATATATTTTTTT
130 ATTAGAAAATAATATATTTTTTT
* *
14359881 AAAGTAATAAAAT-CTAAAAAAAAATACGAACAAA
1 AAAGTAATAAAATCCGAGAAAAAAATACGAACAAA
14359915 AGGTCAAAAT
Statistics
Matches: 592, Mismatches: 41, Indels: 32
0.89 0.06 0.05
Matches are distributed among these distances:
150 2 0.00
151 39 0.07
152 115 0.19
153 158 0.27
154 133 0.22
155 93 0.16
156 52 0.09
ACGTcount: A:0.53, C:0.08, G:0.09, T:0.30
Consensus pattern (152 bp):
AAAGTAATAAAATCCGAGAAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTTAAATTTAT
TTAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAA
TTAGAAAATAATATATTTTTTT
Found at i:14359512 original size:307 final size:308
Alignment explanation
Indices: 14359114--14359925 Score: 1329
Period size: 307 Copynumber: 2.6 Consensus size: 308
14359104 AAATAAATTA
* * *
14359114 AAAGTAATAAAATCCGAGAAAAAAATACGAACAAATGGCCGAAATAAGGGTTTTTTTAAAATTTA
1 AAAGTAATAAAATTCG-GAAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTTTAAATTTA
* *
14359179 TTTAAAAAACACACTAAATAAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAA
65 TTT-AAAAACACACTAAATGAATACATTTCAAAAATAATGTACTAAAATAATGTAAAATAATAAA
* *
14359244 ATTAGAAAATAGTATATTTTTTTAAAGTAATAAAATCCGGAGAAAAAAATACGAACAAATGGCAG
129 ATTAGAAAATAATATATTTTTTTAAAGTAATAAAATCCGGAGAAAAAAATACGAACAAAAGGCAG
*
14359309 AAATAAG-G-TTTTTTT-AATTTATTTAAAAAAACACATTAAATTAATACATTTCAAACATAATG
194 AAATAAGAGTTTTTTTTAAATTTATTTAAAAAAACACAGTAAATTAATACATTTCAAACATAATG
*
14359371 TACTAAAATAATGTAAAATAATAAAATGAA-AAAATAATATATTTTTATTG
259 TACTAAAATAATGTAAAATAATAAAAT-AAGAAAAGAATATATTTTTATTG
*
14359421 AAAGAAATAAAATTCGGAAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTTTTAAATTTA
1 AAAGTAATAAAATTCGGAAAAAAATACGAACAAAGGGCCGAAATAAGGG-TTTTTTTTAAATTTA
14359486 TTTAAAACACACACTAAATGAATACATTTCAAAAATAATGTACTAAAATAATGTAAAATAATAAA
65 TTTAAAA-ACACACTAAATGAATACATTTCAAAAATAATGTACTAAAATAATGTAAAATAATAAA
* *
14359551 ATTAGAAAATAATATATTGTTTTAAAGTAATAAAATCCGG-G-AAAAAATACGAACAAAAGGCCG
129 ATTAGAAAATAATATATTTTTTTAAAGTAATAAAATCCGGAGAAAAAAATACGAACAAAAGGCAG
*
14359614 AAATAAGAGTTTTTTTTAAAATTTATTTTAAAAAACACAGTAAATTAATACATTTCAAACATAAT
194 AAATAAGAGTTTTTTTT-AAATTTATTTAAAAAAACACAGTAAATTAATACATTTCAAACATAAT
14359679 GTACTAAAATAATGTAAAATAATAAAATAAGAAAAGAATATATTTTTATTG
258 GTACTAAAATAATGTAAAATAATAAAATAAGAAAAGAATATATTTTTATTG
*
14359730 AAAGTAATAAAATTCGAAAAAAAATACGAACAAAGGGCCGAAATAAGGG-TTTTTTTAAATTTAT
1 AAAGTAATAAAATTCGGAAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTTTAAATTTAT
*
14359794 TTAAAAATCAAACTAAATGAATACATTTCAAAAATAATGTACTAAAATAATGTAAAATAATAAAA
66 TTAAAAA-CACACTAAATGAATACATTTCAAAAATAATGTACTAAAATAATGTAAAATAATAAAA
* *
14359859 TTAGAAAATAATATATTTTTTTAAAGTAATAAAAT-C-TAAAAAAAAATACGAACAAAAGGTCA-
130 TTAGAAAATAATATATTTTTTTAAAGTAATAAAATCCGGAGAAAAAAATACGAACAAAAGG-CAG
14359921 AAATA
194 AAATA
14359926 CAAACATGTT
Statistics
Matches: 474, Mismatches: 20, Indels: 22
0.92 0.04 0.04
Matches are distributed among these distances:
305 27 0.06
306 40 0.08
307 266 0.56
308 3 0.01
309 138 0.29
ACGTcount: A:0.53, C:0.08, G:0.10, T:0.29
Consensus pattern (308 bp):
AAAGTAATAAAATTCGGAAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTTTAAATTTAT
TTAAAAACACACTAAATGAATACATTTCAAAAATAATGTACTAAAATAATGTAAAATAATAAAAT
TAGAAAATAATATATTTTTTTAAAGTAATAAAATCCGGAGAAAAAAATACGAACAAAAGGCAGAA
ATAAGAGTTTTTTTTAAATTTATTTAAAAAAACACAGTAAATTAATACATTTCAAACATAATGTA
CTAAAATAATGTAAAATAATAAAATAAGAAAAGAATATATTTTTATTG
Found at i:14374358 original size:17 final size:18
Alignment explanation
Indices: 14374326--14374364 Score: 55
Period size: 17 Copynumber: 2.2 Consensus size: 18
14374316 TGTCATCCTT
14374326 TATTGAACTGTCA-TTTG
1 TATTGAACTGTCATTTTG
14374343 TATTGAACTGAT-ATTTTG
1 TATTGAACTG-TCATTTTG
14374361 TATT
1 TATT
14374365 TATTTGAAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 11 0.55
18 9 0.45
ACGTcount: A:0.26, C:0.08, G:0.15, T:0.51
Consensus pattern (18 bp):
TATTGAACTGTCATTTTG
Found at i:14387138 original size:82 final size:82
Alignment explanation
Indices: 14387041--14387198 Score: 244
Period size: 82 Copynumber: 1.9 Consensus size: 82
14387031 ATTTACAAAT
*
14387041 ATAATTCTATTTATTAAAGATTATTTTCATTTAATAAAATACAATTAATCTTTTTTATATAAAAT
1 ATAATGCTATTTATTAAAGATTATTTTCATTTAATAAAATACAATTAATCTTTTTTATATAAAAT
14387106 TTAAACATTTTGTTGAA
66 TTAAACATTTTGTTGAA
* * *** *
14387123 ATAATGCTTTTTATTAAAGATTATTTTTATTTAATAAAATTTTATTAATTTTTTTTATATAAAAT
1 ATAATGCTATTTATTAAAGATTATTTTCATTTAATAAAATACAATTAATCTTTTTTATATAAAAT
*
14387188 TTAAATATTTT
66 TTAAACATTTT
14387199 ATTAAAATTT
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
82 68 1.00
ACGTcount: A:0.40, C:0.04, G:0.03, T:0.53
Consensus pattern (82 bp):
ATAATGCTATTTATTAAAGATTATTTTCATTTAATAAAATACAATTAATCTTTTTTATATAAAAT
TTAAACATTTTGTTGAA
Found at i:14387174 original size:24 final size:25
Alignment explanation
Indices: 14387142--14387189 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
14387132 TTTATTAAAG
*
14387142 ATTATTTTTATTTA-ATAAAATTTT
1 ATTAATTTTATTTATATAAAATTTT
*
14387166 ATTAATTTTTTTTATATAAAATTT
1 ATTAATTTTATTTATATAAAATTT
14387190 AAATATTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 12 0.57
25 9 0.43
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (25 bp):
ATTAATTTTATTTATATAAAATTTT
Found at i:14387196 original size:28 final size:27
Alignment explanation
Indices: 14387136--14387196 Score: 67
Period size: 25 Copynumber: 2.3 Consensus size: 27
14387126 ATGCTTTTTA
*
14387136 TTAAAGATTATTTTTATTTAATAAAAT
1 TTAAATATTATTTTTATTTAATAAAAT
14387163 TT---TATTAATTTTT-TTTATATAAAAT
1 TTAAATATT-ATTTTTATTTA-ATAAAAT
14387188 TTAAATATT
1 TTAAATATT
14387197 TTATTAAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 9
0.74 0.03 0.24
Matches are distributed among these distances:
24 7 0.25
25 15 0.54
27 2 0.07
28 4 0.14
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (27 bp):
TTAAATATTATTTTTATTTAATAAAAT
Found at i:14387217 original size:18 final size:20
Alignment explanation
Indices: 14387175--14387219 Score: 67
Period size: 18 Copynumber: 2.4 Consensus size: 20
14387165 TATTAATTTT
*
14387175 TTTTATATAAAATTTAAATA
1 TTTTATATAAAATTTAAAGA
14387195 TTTTAT-TAAAATTT-AAGA
1 TTTTATATAAAATTTAAAGA
14387213 TTTTATA
1 TTTTATA
14387220 GATGAAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 9 0.39
19 8 0.35
20 6 0.26
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (20 bp):
TTTTATATAAAATTTAAAGA
Found at i:14387741 original size:66 final size:66
Alignment explanation
Indices: 14387629--14387760 Score: 219
Period size: 66 Copynumber: 2.0 Consensus size: 66
14387619 GTTTATCCTA
* * * *
14387629 TCTTAATTCTAGCCTTGTTGTTTGCCATGAGATTCTTTTTAGCCATTGGTAATCAAGTTCATCTT
1 TCTTAATTCTAGCATTGTTGTTTGCCATGAGATTCTTCTTAACCATTGATAATCAAGTTCATCTT
14387694 G
66 G
*
14387695 TCTTGATTCTAGCATTGTTGTTTGCCATGAGATTCTTCTTAACCATTGATAATCAAGTTCATCTT
1 TCTTAATTCTAGCATTGTTGTTTGCCATGAGATTCTTCTTAACCATTGATAATCAAGTTCATCTT
14387760 G
66 G
14387761 CGAATTCAAT
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
66 61 1.00
ACGTcount: A:0.21, C:0.18, G:0.16, T:0.45
Consensus pattern (66 bp):
TCTTAATTCTAGCATTGTTGTTTGCCATGAGATTCTTCTTAACCATTGATAATCAAGTTCATCTT
G
Found at i:14392860 original size:13 final size:13
Alignment explanation
Indices: 14392842--14392870 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
14392832 AAGATCAGCA
14392842 ATATAATATATAT
1 ATATAATATATAT
14392855 ATATAATATATAT
1 ATATAATATATAT
14392868 ATA
1 ATA
14392871 AAGAAATTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (13 bp):
ATATAATATATAT
Found at i:14401390 original size:12 final size:12
Alignment explanation
Indices: 14401373--14401397 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14401363 GGGTGTTCAT
14401373 TTGGTTAACCGA
1 TTGGTTAACCGA
14401385 TTGGTTAACCGA
1 TTGGTTAACCGA
14401397 T
1 T
14401398 CCGAAATAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.36
Consensus pattern (12 bp):
TTGGTTAACCGA
Found at i:14401575 original size:9 final size:9
Alignment explanation
Indices: 14401561--14401627 Score: 80
Period size: 9 Copynumber: 7.4 Consensus size: 9
14401551 TTTGGTTAAA
*
14401561 AATTAACTG
1 AATTAACCG
14401570 AATTAACCG
1 AATTAACCG
*
14401579 AATTACCCG
1 AATTAACCG
*
14401588 AATTAATCG
1 AATTAACCG
* *
14401597 AATTATCGG
1 AATTAACCG
*
14401606 AATTACCCG
1 AATTAACCG
14401615 AATTAACCG
1 AATTAACCG
14401624 AATT
1 AATT
14401628 GAATCACTAC
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
9 48 1.00
ACGTcount: A:0.40, C:0.19, G:0.12, T:0.28
Consensus pattern (9 bp):
AATTAACCG
Found at i:14401599 original size:27 final size:26
Alignment explanation
Indices: 14401561--14401627 Score: 89
Period size: 27 Copynumber: 2.5 Consensus size: 26
14401551 TTTGGTTAAA
14401561 AATTAACTGAATTAACCGAATTACCCG
1 AATTAAC-GAATTAACCGAATTACCCG
* *
14401588 AATTAATCGAATTATCGGAATTACCCG
1 AATTAA-CGAATTAACCGAATTACCCG
14401615 AATTAACCGAATT
1 AATTAA-CGAATT
14401628 GAATCACTAC
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
27 35 0.97
28 1 0.03
ACGTcount: A:0.40, C:0.19, G:0.12, T:0.28
Consensus pattern (26 bp):
AATTAACGAATTAACCGAATTACCCG
Found at i:14401761 original size:13 final size:13
Alignment explanation
Indices: 14401743--14401777 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
14401733 TATAATTGGG
14401743 TTGGGTTGGGTAA
1 TTGGGTTGGGTAA
14401756 TTGGGTTGGGTAA
1 TTGGGTTGGGTAA
*
14401769 TTGTGTTGG
1 TTGGGTTGG
14401778 CTTGAATACT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.11, C:0.00, G:0.46, T:0.43
Consensus pattern (13 bp):
TTGGGTTGGGTAA
Found at i:14402775 original size:20 final size:20
Alignment explanation
Indices: 14402750--14402787 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
14402740 TATTTACTTT
14402750 TTTACTTTTTATAATTCATA
1 TTTACTTTTTATAATTCATA
14402770 TTTACTTTTTATAATTCA
1 TTTACTTTTTATAATTCA
14402788 AGTAAACTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.29, C:0.11, G:0.00, T:0.61
Consensus pattern (20 bp):
TTTACTTTTTATAATTCATA
Found at i:14402921 original size:23 final size:24
Alignment explanation
Indices: 14402882--14402929 Score: 64
Period size: 22 Copynumber: 2.0 Consensus size: 24
14402872 TTTATTTGAT
14402882 AATATGTTTTGATATAACAAATTAA
1 AATATGTTTTGATATAA-AAATTAA
*
14402907 AATAT-TTTTGA-ATAAAAGTTAA
1 AATATGTTTTGATATAAAAATTAA
14402929 A
1 A
14402930 GTTGCACAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 7 0.32
23 4 0.18
24 6 0.27
25 5 0.23
ACGTcount: A:0.50, C:0.02, G:0.08, T:0.40
Consensus pattern (24 bp):
AATATGTTTTGATATAAAAATTAA
Found at i:14404274 original size:17 final size:17
Alignment explanation
Indices: 14404254--14404297 Score: 72
Period size: 16 Copynumber: 2.6 Consensus size: 17
14404244 CATTTTTATA
14404254 TTTAAAATTTAAATTTT
1 TTTAAAATTTAAATTTT
14404271 TTT-AAATTTAAATTTT
1 TTTAAAATTTAAATTTT
14404287 TTTAAATATTT
1 TTTAAA-ATTT
14404298 TTCATAATGT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
16 16 0.64
17 5 0.20
18 4 0.16
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
TTTAAAATTTAAATTTT
Found at i:14408076 original size:127 final size:126
Alignment explanation
Indices: 14407793--14408357 Score: 742
Period size: 126 Copynumber: 4.5 Consensus size: 126
14407783 AAATCAAAGT
* * * * * * * *
14407793 AGGATGATTTATCATAAGGATTTTTGAAGTCGCGCCCACGTGTACGCGCTTTTGCTACAGTAAGT
1 AGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGTAGGT
* * *
14407858 CCTGGAAAAATAATTTTGAGTTGACGTTTCTGAGCAAATAGTTT-AACAAACGTTTCAAGC
66 CCTGGAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTTTAAAAAAACGCTTCAAGC
* * * *
14407918 AGAATGCTTTATGAGAAGAATTTGTGAAATCGTGCCCTCGTGGACGCGCTTTTGCTACAGTTGGT
1 AGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGTAGGT
*
14407983 ACTGGAAGAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTTTAAAAAAACGCTTCAAGC
66 CCTGGAA-AAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTTTAAAAAAACGCTTCAAGC
* * *
14408045 AGGATGCTTTATGATAAGGATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTATAGTAGGT
1 AGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGTAGGT
** * * * * *
14408110 CCTTAAAAAATAATTTCGAGTTGATGTTGCTGAGCAAATAGTATAAAACAACGCTGCAAGC
66 CCTGGAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTTTAAAAAAACGCTTCAAGC
* * *
14408171 AAGATGCTATT-TGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCGTTTGCTACAGTAGG
1 AGGATGCT-TTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGTAGG
* * * * * *
14408235 TCCTGGAAAAATAATTTCGACTTGATGATTCTGAGCAAATAG--TATAAAATCGCTTCTAGC
65 TCCTGGAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTTTAAAAAAACGCTTCAAGC
* * *
14408295 AGGATGCTGTATAAGAAGAATTTGTGAAATCGCACCCACGTGGACGCGCTTTTGCTACAGTAG
1 AGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGTAG
14408358 CATGTTTGGG
Statistics
Matches: 383, Mismatches: 53, Indels: 9
0.86 0.12 0.02
Matches are distributed among these distances:
123 1 0.00
124 68 0.18
125 59 0.15
126 177 0.46
127 78 0.20
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (126 bp):
AGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGTAGGT
CCTGGAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTTTAAAAAAACGCTTCAAGC
Found at i:14411556 original size:43 final size:42
Alignment explanation
Indices: 14411480--14411882 Score: 229
Period size: 43 Copynumber: 9.3 Consensus size: 42
14411470 AATTATATTT
* * *
14411480 AAGTTAAGGG-TTAGGGTTTTTATTTAAGTGTTACGATTTTA
1 AAGTTAAGGGTTTAGGGTTTTAATTTAAGGGTTAGGATTTTA
* *
14411521 AAGTTAAGGGTTTAGGGTATTTAATTTAAGGGTTA-CAGTTTTT
1 AAGTTAAGGGTTTAGGGT-TTTAATTTAAGGGTTAGGA-TTTTA
* * *
14411564 AAGTTAAGGGTTTAAGGTTTTAAATTTAAGGGTTAGGGTTTTT
1 AAGTTAAGGGTTTAGGGTTTT-AATTTAAGGGTTAGGATTTTA
14411607 AAGTTAAGGGTTTAGGGTTTTAAGGTTTAA-GG-T----TTTT-
1 AAGTTAAGGGTTTAGGGTTTTAA--TTTAAGGGTTAGGATTTTA
* *** ** *
14411644 AATTTAAGGGTTTACAATTTTTAAGCTAATGGGTTAGGGTTTTA
1 AAGTTAAGGGTTTA-GGGTTTTAATTTAA-GGGTTAGGATTTTA
* * *
14411688 AAGTTAAGGG-TTAGGAATTTTAATTTAAGGGTTAGGGTTTTT
1 AAGTTAAGGGTTTAGG-GTTTTAATTTAAGGGTTAGGATTTTA
* * *
14411730 AAGTTAAGGG-TTAGGATTTTTAAGTTAAAGGTTTAGGGTTGTAGGGTTTTA
1 AAGTTAAGGGTTTAGG-GTTTTAA--T-----TTAAGGG-T-TAGGATTTTA
* * * ***
14411781 GGATTTTAGGGTTTAGGGTGTTTAATTTAAGGGTTTTCAATTTTTA
1 -AAGTTAAGGGTTTAGGGT-TTTAATTTAAGGG-TTAGGA-TTTTA
* *
14411827 AA-TTAAAGGTTTAGGGTTTTTAAGTTAAGGGTTAGGAATTTT-
1 AAGTTAAGGGTTTAGGG-TTTTAATTTAAGGGTTAGG-ATTTTA
*
14411869 AATTTAAGGGTTTA
1 AAGTTAAGGGTTTA
14411883 TGATTTTAGG
Statistics
Matches: 288, Mismatches: 41, Indels: 64
0.73 0.10 0.16
Matches are distributed among these distances:
36 3 0.01
37 13 0.05
38 12 0.04
39 1 0.00
41 10 0.03
42 51 0.18
43 107 0.37
44 40 0.14
45 3 0.01
46 13 0.05
49 6 0.02
50 1 0.00
51 10 0.03
52 8 0.03
53 10 0.03
ACGTcount: A:0.28, C:0.01, G:0.27, T:0.44
Consensus pattern (42 bp):
AAGTTAAGGGTTTAGGGTTTTAATTTAAGGGTTAGGATTTTA
Found at i:14411570 original size:21 final size:21
Alignment explanation
Indices: 14411477--14411769 Score: 258
Period size: 21 Copynumber: 14.0 Consensus size: 21
14411467 TCAAATTATA
14411477 TTTAAGTTAAGGGTTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTT
* * * *
14411498 TTT-ATTTAAGTGTTACGATT
1 TTTAAGTTAAGGGTTAGGGTT
* *
14411518 TTAAAGTTAAGGGTTTAGGGTA
1 TTTAAGTTAAGGG-TTAGGGTT
* **
14411540 TTTAATTTAAGGGTTACAGTT
1 TTTAAGTTAAGGGTTAGGGTT
*
14411561 TTTAAGTTAAGGGTTTAAGGTT
1 TTTAAGTTAAGGG-TTAGGGTT
* *
14411583 TTAAATTTAAGGGTTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTT
14411604 TTTAAGTTAAGGGTTTAGGG--
1 TTTAAGTTAAGGG-TTAGGGTT
* *
14411624 -TT---TTAAGGTTTAAGGTT
1 TTTAAGTTAAGGGTTAGGGTT
* ***
14411641 TTTAATTTAAGGGTTTACAATT
1 TTTAAGTTAAGGG-TTAGGGTT
*
14411663 TTTAAGCTAATGGGTTAGGGTT
1 TTTAAGTTAA-GGGTTAGGGTT
* **
14411685 TTAAAGTTAAGGGTTAGGAAT
1 TTTAAGTTAAGGGTTAGGGTT
*
14411706 TTTAATTTAAGGGTTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTT
*
14411727 TTTAAGTTAAGGGTTAGGATT
1 TTTAAGTTAAGGGTTAGGGTT
*
14411748 TTTAAGTTAAAGGTTTAGGGTT
1 TTTAAGTT-AAGGGTTAGGGTT
14411770 GTAGGGTTTT
Statistics
Matches: 213, Mismatches: 46, Indels: 25
0.75 0.16 0.09
Matches are distributed among these distances:
15 5 0.02
16 6 0.03
18 2 0.01
19 2 0.01
20 15 0.07
21 104 0.49
22 76 0.36
23 3 0.01
ACGTcount: A:0.28, C:0.01, G:0.27, T:0.44
Consensus pattern (21 bp):
TTTAAGTTAAGGGTTAGGGTT
Found at i:14411645 original size:16 final size:16
Alignment explanation
Indices: 14411610--14411642 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
14411600 GGTTTTTAAG
14411610 TTAAGGGTTTAGGGTT
1 TTAAGGGTTTAGGGTT
*
14411626 TTAA-GGTTTAAGGTT
1 TTAAGGGTTTAGGGTT
14411641 TT
1 TT
14411643 TAATTTAAGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.21, C:0.00, G:0.30, T:0.48
Consensus pattern (16 bp):
TTAAGGGTTTAGGGTT
Found at i:14411651 original size:80 final size:80
Alignment explanation
Indices: 14411545--14412058 Score: 326
Period size: 80 Copynumber: 6.5 Consensus size: 80
14411535 GGGTATTTAA
* *
14411545 TTTAAGGGTTACA-GTTTTTAAGTTAAGGGTTTAAGGTTTTAAATTTAAGGGTTAGGGTTTTTAA
1 TTTAAGGTTTA-AGGTTTTTAATTTAAGGGTTTAAGGTTTTAAATTTAAGGGTTAGGGTTTTTAA
14411609 GTTAAGGGTTTAGGGT
65 GTTAAGGGTTTAGGGT
* * ** *
14411625 TTTAAGGTTTAAGGTTTTTAATTTAAGGGTTTACA-ATTTTTAAGCTAATGGGTTAGGGTTTTAA
1 TTTAAGGTTTAAGGTTTTTAATTTAAGGGTTTA-AGGTTTTAAATTTAA-GGGTTAGGGTTTTTA
*
14411689 AGTTAAGGG-TTAGGAATTTT
64 AGTTAAGGGTTTAGG----GT
* * * * * *
14411709 AATTTAAGGGTTAGGGTTTTTAAGTTAAGGG-TT-AGGATTTTTAAGTTAAAGGTTTAGGG---T
1 --TTTAAGGTTTAAGGTTTTTAATTTAAGGGTTTAAGG--TTTTAAATTTAAGGGTTAGGGTTTT
*
14411769 T--G-T-AGGGTTTTAGGAT
62 TAAGTTAAGGG-TTTAGGGT
* * * * * *
14411785 TTTAGGGTTTAGGGTGTTTAATTTAAGGGTTTTCAA-TTTTTAAATTAAAGGTTTAGGGTTTTTA
1 TTTAAGGTTTAAGGTTTTTAATTTAAGGG-TTT-AAGGTTTTAAATTTAAGGGTTAGGGTTTTTA
*
14411849 AGTTAAGGG-TTAGGAAT
64 AGTTAAGGGTTTAGG-GT
* * * * * *
14411866 TTTAA--TTTAAGGGTTTATGATTTTAGGGTTTATGGTTTTTAATTTTAA-GGTGTATGGTTTTT
1 TTTAAGGTTTAA-GGTTTTTAATTTAAGGGTTTAAGG-TTTTAAATTTAAGGGT-TAGGGTTTTT
*
14411928 AAGTTAAGGGTTTATGGT
63 AAGTTAAGGGTTTAGGGT
* * * * *
14411946 TTT-A-G-----GG-TTTTAATTTAAGGG-TTAGGGTTTTTAATTTATGGATTTAAGGTTTTTAA
1 TTTAAGGTTTAAGGTTTTTAATTTAAGGGTTTAAGGTTTTAAATTTAAGG-GTTAGGGTTTTTAA
14412002 GTTAAGGGTTTAGGGT
65 GTTAAGGGTTTAGGGT
* * *
14412018 TTT-AGGATTTAAAGTTGTTAATTTAAGGGTTTAGGGTTTTA
1 TTTAAGG-TTTAAGGTTTTTAATTTAAGGGTTTAAGGTTTTA
14412059 GGTTAAGGGT
Statistics
Matches: 338, Mismatches: 53, Indels: 85
0.71 0.11 0.18
Matches are distributed among these distances:
71 9 0.03
72 36 0.11
73 13 0.04
74 27 0.08
75 20 0.06
76 3 0.01
78 8 0.02
79 13 0.04
80 114 0.34
81 45 0.13
82 5 0.01
83 1 0.00
84 1 0.00
85 10 0.03
86 33 0.10
ACGTcount: A:0.26, C:0.01, G:0.27, T:0.46
Consensus pattern (80 bp):
TTTAAGGTTTAAGGTTTTTAATTTAAGGGTTTAAGGTTTTAAATTTAAGGGTTAGGGTTTTTAAG
TTAAGGGTTTAGGGT
Found at i:14411665 original size:59 final size:58
Alignment explanation
Indices: 14411567--14411696 Score: 165
Period size: 59 Copynumber: 2.2 Consensus size: 58
14411557 AGTTTTTAAG
*** *
14411567 TTAAGGGTTTAAGGTTTTAAATTTAAGGGTTAGGGTTTTTAAGTTAA-GGGTTTAGGGTT
1 TTAA-GGTTTAAGGTTTTAAATTTAAGGGTTACAATTTTTAAGCTAATGGG-TTAGGGTT
*
14411626 TTAAGGTTTAAGGTTTTTAATTTAAGGGTTTACAATTTTTAAGCTAATGGGTTAGGGTT
1 TTAAGGTTTAAGGTTTTAAATTTAAGGG-TTACAATTTTTAAGCTAATGGGTTAGGGTT
*
14411685 TTAAAG-TTAAGG
1 TTAAGGTTTAAGG
14411697 GTTAGGAATT
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
58 29 0.46
59 31 0.49
60 3 0.05
ACGTcount: A:0.28, C:0.02, G:0.27, T:0.44
Consensus pattern (58 bp):
TTAAGGTTTAAGGTTTTAAATTTAAGGGTTACAATTTTTAAGCTAATGGGTTAGGGTT
Found at i:14411804 original size:16 final size:15
Alignment explanation
Indices: 14411759--14411804 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 15
14411749 TTAAGTTAAA
*
14411759 GGTTTAGGGTTGTAG
1 GGTTTAGGGTTTTAG
*
14411774 GGTTTTAGGATTTTAG
1 GG-TTTAGGGTTTTAG
14411790 GGTTTAGGGTGTTTA
1 GGTTTAGGGT-TTTA
14411805 ATTTAAGGGT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
15 9 0.35
16 17 0.65
ACGTcount: A:0.15, C:0.00, G:0.39, T:0.46
Consensus pattern (15 bp):
GGTTTAGGGTTTTAG
Found at i:14411813 original size:22 final size:21
Alignment explanation
Indices: 14411764--14412077 Score: 93
Period size: 22 Copynumber: 14.7 Consensus size: 21
14411754 TTAAAGGTTT
*
14411764 AGGGTTGTAGGGTTTTAGGATTTT
1 AGGGTT-TAGGGTTTTA--ATTTA
14411788 AGGGTTTAGGGTGTTTAATTTA
1 AGGGTTTAGGGT-TTTAATTTA
** *
14411810 AGGGTTTTCA-ATTTTTAAATTA
1 AGGG-TTT-AGGGTTTTAATTTA
* *
14411832 AAGGTTTAGGGTTTTTAAGTTA
1 AGGGTTTAGGG-TTTTAATTTA
*
14411854 AGGG-TTAGGAATTTTAATTTA
1 AGGGTTTAGG-GTTTTAATTTA
* *
14411875 AGGGTTTA------TGATTTT
1 AGGGTTTAGGGTTTTAATTTA
*
14411890 AGGGTTTATGGTTTTTAATTTTA
1 AGGGTTTA-GGGTTTTAA-TTTA
* * *
14411913 A-GGTGTATGGTTTTTAAGTTA
1 AGGGTTTA-GGGTTTTAATTTA
* *
14411934 AGGGTTTATGGTTTTAGGGTTTTAA
1 AGGGTTTAGGGTTTTA---ATTT-A
* *
14411959 TTTAAGGGTTAGGGTTTTTAATTTA
1 ---AGGGTTTAGGG-TTTTAATTTA
* * * *
14411984 TGGATTTAAGGTTTTTAAGTTA
1 AGGGTTT-AGGGTTTTAATTTA
14412006 AGGGTTTAGGGTTTTAGGATTTA
1 AGGGTTTAGGGTTTTA--ATTTA
*
14412029 A-AG-TT---G--TTAATTTA
1 AGGGTTTAGGGTTTTAATTTA
**
14412043 AGGGTTTAGGGTTTTAGGTTA
1 AGGGTTTAGGGTTTTAATTTA
*
14412064 AGGGTTTAAGGTTT
1 AGGGTTTAGGGTTT
14412078 AAGGCACAAG
Statistics
Matches: 215, Mismatches: 41, Indels: 71
0.66 0.13 0.22
Matches are distributed among these distances:
14 6 0.03
15 14 0.07
16 5 0.02
18 1 0.00
19 1 0.00
20 1 0.00
21 60 0.28
22 74 0.34
23 22 0.10
24 13 0.06
25 2 0.01
26 3 0.01
28 8 0.04
29 5 0.02
ACGTcount: A:0.24, C:0.00, G:0.28, T:0.48
Consensus pattern (21 bp):
AGGGTTTAGGGTTTTAATTTA
Found at i:14411867 original size:44 final size:43
Alignment explanation
Indices: 14411790--14411882 Score: 114
Period size: 44 Copynumber: 2.1 Consensus size: 43
14411780 AGGATTTTAG
* **
14411790 GGTTTAGGGTGTTTAATTTAAGGGTTTTCAATTTTTAAATTAAA
1 GGTTTAGGGTGTTTAAGTTAAGGGTTAGCAA-TTTTAAATTAAA
* * * *
14411834 GGTTTAGGGTTTTTAAGTTAAGGGTTAGGAATTTTAATTTAAG
1 GGTTTAGGGTGTTTAAGTTAAGGGTTAGCAATTTTAAATTAAA
14411877 GGTTTA
1 GGTTTA
14411883 TGATTTTAGG
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
43 16 0.38
44 26 0.62
ACGTcount: A:0.28, C:0.01, G:0.25, T:0.46
Consensus pattern (43 bp):
GGTTTAGGGTGTTTAAGTTAAGGGTTAGCAATTTTAAATTAAA
Found at i:14411893 original size:15 final size:15
Alignment explanation
Indices: 14411870--14411904 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
14411860 AGGAATTTTA
*
14411870 ATTTAAGGGTTTATG
1 ATTTTAGGGTTTATG
14411885 ATTTTAGGGTTTATG
1 ATTTTAGGGTTTATG
*
14411900 GTTTT
1 ATTTT
14411905 TAATTTTAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.20, C:0.00, G:0.26, T:0.54
Consensus pattern (15 bp):
ATTTTAGGGTTTATG
Found at i:14411914 original size:59 final size:58
Alignment explanation
Indices: 14411834--14411955 Score: 158
Period size: 59 Copynumber: 2.1 Consensus size: 58
14411824 TTAAATTAAA
*
14411834 GGTTTAGGGTTTTTAAGTTAAGG-GT-TAGGAATTTTAATTTAAGGGTTTATGATTTTAG
1 GGTTTAGGGTTTTTAAGTTAAGGTGTAT-GG-ATTTTAAGTTAAGGGTTTATGATTTTAG
* * * *
14411892 GGTTTATGGTTTTTAATTTTAAGGTGTATGGTTTTTAAGTTAAGGGTTTATGGTTTTAG
1 GGTTTAGGGTTTTTAA-GTTAAGGTGTATGGATTTTAAGTTAAGGGTTTATGATTTTAG
14411951 GGTTT
1 GGTTT
14411956 TAATTTAAGG
Statistics
Matches: 56, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
58 15 0.27
59 36 0.64
60 4 0.07
61 1 0.02
ACGTcount: A:0.22, C:0.00, G:0.28, T:0.50
Consensus pattern (58 bp):
GGTTTAGGGTTTTTAAGTTAAGGTGTATGGATTTTAAGTTAAGGGTTTATGATTTTAG
Found at i:14411941 original size:29 final size:29
Alignment explanation
Indices: 14411909--14411968 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 29
14411899 GGTTTTTAAT
*
14411909 TTTAAGGTGTAT-GGTTTTTAAGTTAAGGG
1 TTTAAGGT-TATAGGGTTTTAAGTTAAGGG
* * *
14411938 TTTATGGTTTTAGGGTTTTAATTTAAGGG
1 TTTAAGGTTATAGGGTTTTAAGTTAAGGG
14411967 TT
1 TT
14411969 AGGGTTTTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
28 2 0.08
29 24 0.92
ACGTcount: A:0.22, C:0.00, G:0.28, T:0.50
Consensus pattern (29 bp):
TTTAAGGTTATAGGGTTTTAAGTTAAGGG
Found at i:14411977 original size:50 final size:51
Alignment explanation
Indices: 14411884--14411998 Score: 126
Period size: 50 Copynumber: 2.3 Consensus size: 51
14411874 AAGGGTTTAT
* * * *
14411884 GATTTTAGGGTTTATGGTTTTTAATTTTAAGGTGTATGGTTTTTAAGTTAAG
1 GATTTAAGGTTTTA-GGGTTTTAATTTTAAGGTGTAGGGTTTTTAAGTTAAG
* * * *
14411936 GGTTTATGGTTTTAGGGTTTTAA-TTTAAGG-GTTAGGGTTTTTAATTTATG
1 GATTTAAGGTTTTAGGGTTTTAATTTTAAGGTG-TAGGGTTTTTAAGTTAAG
14411986 GATTTAAGGTTTT
1 GATTTAAGGTTTT
14411999 TAAGTTAAGG
Statistics
Matches: 52, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
49 1 0.02
50 33 0.63
51 8 0.15
52 10 0.19
ACGTcount: A:0.22, C:0.00, G:0.26, T:0.52
Consensus pattern (51 bp):
GATTTAAGGTTTTAGGGTTTTAATTTTAAGGTGTAGGGTTTTTAAGTTAAG
Found at i:14411977 original size:72 final size:74
Alignment explanation
Indices: 14411875--14412028 Score: 206
Period size: 72 Copynumber: 2.1 Consensus size: 74
14411865 TTTTAATTTA
* * * *
14411875 AGGGTTTATGATTTTAGGGTTTATGGTTTTTAATTTTAAGG-TGTATGGTTTTTAAGTTAAGGGT
1 AGGGTTTATAATTTAAGGGTTTAGGGTTTTTAA-TTTAAGGATGTAAGGTTTTTAAGTTAAGGGT
*
14411939 TTATGGTTTT
65 TTAGGGTTTT
* *
14411949 AGGGTTT-TAATTTAAGGG-TTAGGGTTTTTAATTTATGGATTTAAGGTTTTTAAGTTAAGGGTT
1 AGGGTTTATAATTTAAGGGTTTAGGGTTTTTAATTTAAGGATGTAAGGTTTTTAAGTTAAGGGTT
14412012 TAGGGTTTT
66 TAGGGTTTT
*
14412021 AGGATTTA
1 AGGGTTTA
14412029 AAGTTGTTAA
Statistics
Matches: 70, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
71 6 0.09
72 48 0.69
73 9 0.13
74 7 0.10
ACGTcount: A:0.23, C:0.00, G:0.27, T:0.50
Consensus pattern (74 bp):
AGGGTTTATAATTTAAGGGTTTAGGGTTTTTAATTTAAGGATGTAAGGTTTTTAAGTTAAGGGTT
TAGGGTTTT
Found at i:14412009 original size:43 final size:43
Alignment explanation
Indices: 14411938--14412020 Score: 123
Period size: 43 Copynumber: 1.9 Consensus size: 43
14411928 AAGTTAAGGG
* *
14411938 TTTATGGTTTTAGGGTTTTAATTTAAGGG-TTAGGGTTTTTAA
1 TTTATGGTTTAAGGGTTTTAAGTTAAGGGTTTAGGGTTTTTAA
*
14411980 TTTATGGATTTAAGGTTTTTAAGTTAAGGGTTTAGGGTTTT
1 TTTATGG-TTTAAGGGTTTTAAGTTAAGGGTTTAGGGTTTT
14412021 AGGATTTAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
42 7 0.19
43 19 0.53
44 10 0.28
ACGTcount: A:0.22, C:0.00, G:0.27, T:0.52
Consensus pattern (43 bp):
TTTATGGTTTAAGGGTTTTAAGTTAAGGGTTTAGGGTTTTTAA
Found at i:14412021 original size:21 final size:21
Alignment explanation
Indices: 14411946--14412077 Score: 100
Period size: 21 Copynumber: 6.5 Consensus size: 21
14411936 GGTTTATGGT
14411946 TTTAGGGTTTTAATTTAAGGG
1 TTTAGGGTTTTAATTTAAGGG
* *
14411967 -TTAGGGTTTTTAATTTATGGA
1 TTTAGGG-TTTTAATTTAAGGG
* *
14411988 TTTAAGGTTTTTAAGTTAAGGG
1 TTT-AGGGTTTTAATTTAAGGG
*
14412010 TTTAGGGTTTTAGGATTTAA-AG
1 TTTAGGGTTTTA--ATTTAAGGG
14412032 -TT---G--TTAATTTAAGGG
1 TTTAGGGTTTTAATTTAAGGG
**
14412047 TTTAGGGTTTTAGGTTAAGGG
1 TTTAGGGTTTTAATTTAAGGG
*
14412068 TTTAAGGTTT
1 TTTAGGGTTT
14412078 AAGGCACAAG
Statistics
Matches: 86, Mismatches: 13, Indels: 24
0.70 0.11 0.20
Matches are distributed among these distances:
14 6 0.07
15 1 0.01
16 5 0.06
18 1 0.01
19 1 0.01
20 6 0.07
21 41 0.48
22 17 0.20
23 8 0.09
ACGTcount: A:0.24, C:0.00, G:0.28, T:0.48
Consensus pattern (21 bp):
TTTAGGGTTTTAATTTAAGGG
Found at i:14412026 original size:37 final size:37
Alignment explanation
Indices: 14411980--14412060 Score: 126
Period size: 37 Copynumber: 2.2 Consensus size: 37
14411970 GGGTTTTTAA
* *
14411980 TTTATGGATTTAAGGTTTTTAAGTTAAGGGTTTAGGGT
1 TTTA-GGATTTAAAGTTGTTAAGTTAAGGGTTTAGGGT
*
14412018 TTTAGGATTTAAAGTTGTTAATTTAAGGGTTTAGGGT
1 TTTAGGATTTAAAGTTGTTAAGTTAAGGGTTTAGGGT
14412055 TTTAGG
1 TTTAGG
14412061 TTAAGGGTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
37 36 0.90
38 4 0.10
ACGTcount: A:0.25, C:0.00, G:0.28, T:0.47
Consensus pattern (37 bp):
TTTAGGATTTAAAGTTGTTAAGTTAAGGGTTTAGGGT
Found at i:14412062 original size:14 final size:14
Alignment explanation
Indices: 14412039--14412078 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
14412029 AAGTTGTTAA
14412039 TTTAAGGGTTTAGGG
1 TTTAA-GGTTTAGGG
* *
14412054 TTTTAGGTTAAGGG
1 TTTAAGGTTTAGGG
14412068 TTTAAGGTTTA
1 TTTAAGGTTTA
14412079 AGGCACAAGC
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
14 17 0.81
15 4 0.19
ACGTcount: A:0.23, C:0.00, G:0.33, T:0.45
Consensus pattern (14 bp):
TTTAAGGTTTAGGG
Found at i:14413005 original size:21 final size:21
Alignment explanation
Indices: 14412975--14413257 Score: 245
Period size: 21 Copynumber: 13.5 Consensus size: 21
14412965 TCAAATTATA
14412975 TTTAAGTTAAGGGTTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTT
* * * * *
14412996 TTTTATTTAAGTGTTACGATT
1 TTTAAGTTAAGGGTTAGGGTT
* *
14413017 TTAAAGTTAAGGGTTTAGGGTA
1 TTTAAGTTAAGGG-TTAGGGTT
* ***
14413039 TTTAATTTAAGGGTTACAATT
1 TTTAAGTTAAGGGTTAGGGTT
*
14413060 TTTAAGTTAAGGGTTTAAGGTT
1 TTTAAGTTAAGGG-TTAGGGTT
* *
14413082 TTAAATTTAAGGGTTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTT
14413103 TTTAAGTTAAGGGTTTAGGG-T
1 TTTAAGTTAAGGG-TTAGGGTT
* *
14413124 TTT-A---AA-GTTTAAGGTT
1 TTTAAGTTAAGGGTTAGGGTT
* ***
14413140 TTTAATTTAAGGGTTTACAATT
1 TTTAAGTTAAGGG-TTAGGGTT
*
14413162 TTTAAGCTAATGGGTTAGGGTT
1 TTTAAGTTAA-GGGTTAGGGTT
* **
14413184 TTAAAGTTAAGGGTTAGGAAT
1 TTTAAGTTAAGGGTTAGGGTT
*
14413205 TTTAATTTAAGGGTTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTT
*
14413226 TTTAAGTTAAGGGTTAGGATT
1 TTTAAGTTAAGGGTTAGGGTT
14413247 TTTAAGTTAAG
1 TTTAAGTTAAG
14413258 TATTTTTAAG
Statistics
Matches: 203, Mismatches: 48, Indels: 22
0.74 0.18 0.08
Matches are distributed among these distances:
15 5 0.02
16 5 0.02
17 3 0.01
20 3 0.01
21 120 0.59
22 64 0.32
23 3 0.01
ACGTcount: A:0.29, C:0.01, G:0.25, T:0.45
Consensus pattern (21 bp):
TTTAAGTTAAGGGTTAGGGTT
Found at i:14413047 original size:43 final size:42
Alignment explanation
Indices: 14412975--14413285 Score: 236
Period size: 43 Copynumber: 7.5 Consensus size: 42
14412965 TCAAATTATA
* *
14412975 TTTAAGTTAAGGG-TTAGGGTTTTTTATTTAAGTGTTACGATT
1 TTTAAGTTAAGGGTTTAGGG-TTTTAATTTAAGGGTTACGATT
* *
14413017 TTAAAGTTAAGGGTTTAGGGTATTTAATTTAAGGGTTACAATT
1 TTTAAGTTAAGGGTTTAGGGT-TTTAATTTAAGGGTTACGATT
* * *
14413060 TTTAAGTTAAGGGTTTAAGGTTTTAAATTTAAGGGTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTTTT-AATTTAAGGGTTACGATT
* * *
14413103 TTTAAGTTAAGGGTTTAGGGTTTT-A---AA-GTTTAAGGTT
1 TTTAAGTTAAGGGTTTAGGGTTTTAATTTAAGGGTTACGATT
* *** ** * *
14413140 TTTAATTTAAGGGTTTACAATTTTTAAGCTAATGGGTTAGGGTT
1 TTTAAGTTAAGGGTTTA-GGGTTTTAATTTAA-GGGTTACGATT
* * * *
14413184 TTAAAGTTAAGGG-TTAGGAATTTTAATTTAAGGGTTAGGGTT
1 TTTAAGTTAAGGGTTTAGG-GTTTTAATTTAAGGGTTACGATT
* *
14413226 TTTAAGTTAAGGG-TTA-GG-ATT--TTTAA--GTTAAGTATT
1 TTTAAGTTAAGGGTTTAGGGTTTTAATTTAAGGGTTACG-ATT
14413262 TTTAAGTTAAGGGTTTTAGGGTTT
1 TTTAAGTTAAGGG-TTTAGGGTTT
14413286 AAGGTTTCTA
Statistics
Matches: 222, Mismatches: 31, Indels: 34
0.77 0.11 0.12
Matches are distributed among these distances:
35 5 0.02
36 15 0.07
37 29 0.13
38 9 0.04
39 5 0.02
40 1 0.00
41 2 0.01
42 44 0.20
43 93 0.42
44 19 0.09
ACGTcount: A:0.28, C:0.01, G:0.25, T:0.45
Consensus pattern (42 bp):
TTTAAGTTAAGGGTTTAGGGTTTTAATTTAAGGGTTACGATT
Found at i:14413150 original size:14 final size:15
Alignment explanation
Indices: 14413115--14413156 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
14413105 TAAGTTAAGG
*
14413115 GTTTAGGGTTTTAAA
1 GTTTAAGGTTTTAAA
*
14413130 GTTTAAGGTTTTTAA
1 GTTTAAGGTTTTAAA
*
14413145 -TTTAAGGGTTTA
1 GTTTAAGGTTTTA
14413157 CAATTTTTAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
14 10 0.43
15 13 0.57
ACGTcount: A:0.26, C:0.00, G:0.24, T:0.50
Consensus pattern (15 bp):
GTTTAAGGTTTTAAA
Found at i:14414721 original size:50 final size:50
Alignment explanation
Indices: 14414607--14414849 Score: 351
Period size: 50 Copynumber: 4.8 Consensus size: 50
14414597 GATAATAACA
* * **
14414607 TGCCAAAGCCATGTCCTAGACATGGTCTTACATGGGATGTTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* * * *
14414658 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
14414708 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * *
14414758 TGCCAACGCCATGTCCCAAACATAGTCTTACATGAGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
14414808 TGCCAATGCCATGTCCTAGACATGGTCTTACATGGGACCTCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
14414850 TTACCCAAAT
Statistics
Matches: 173, Mismatches: 19, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
50 141 0.82
51 32 0.18
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.26
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:14416042 original size:22 final size:22
Alignment explanation
Indices: 14416014--14416136 Score: 149
Period size: 22 Copynumber: 5.4 Consensus size: 22
14416004 GGCCATTACA
14416014 TAGGGTTTTTAAGTTAAGGGTT
1 TAGGGTTTTTAAGTTAAGGGTT
14416036 TAGGGTTTTTAAGTTAAGGGTT
1 TAGGGTTTTTAAGTTAAGGGTT
*
14416058 TAGTGTTTTTAAGTTAAGGGTT
1 TAGGGTTTTTAAGTTAAGGGTT
* *
14416080 TAGGGTTTTTAAATTTAGGGTTATGGT
1 TAGGGTTTTTAAGTTAAGGG---T--T
14416107 TAGGGTTTTT-AGATTAAGGGTT
1 TAGGGTTTTTAAG-TTAAGGGTT
*
14416129 TAAGGTTT
1 TAGGGTTT
14416137 GTCAATTAAA
Statistics
Matches: 88, Mismatches: 7, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
22 68 0.77
24 1 0.01
25 1 0.01
26 1 0.01
27 17 0.19
ACGTcount: A:0.23, C:0.00, G:0.30, T:0.47
Consensus pattern (22 bp):
TAGGGTTTTTAAGTTAAGGGTT
Found at i:14417310 original size:180 final size:180
Alignment explanation
Indices: 14417008--14417368 Score: 677
Period size: 180 Copynumber: 2.0 Consensus size: 180
14416998 TATAATCATA
*
14417008 CCGATCTTCCCACATTTGGATGTACTCGGACCAGAATCTCGGCCAATCCGTATTCAATTGCCGAA
1 CCGATCTTCCCACATTTGGATGTACTCGGACCAGAATCTCGACCAATCCGTATTCAATTGCCGAA
*
14417073 GGTCGATTTTGTGGTGATCATCAAACACCTCAAGTTCCACGGGAATCGGTTGTCTACATCTAAAT
66 GGTCGATTTTGTGGTGATCATCAAACACCTCAAGTTCCACGGGAATCGGTTGTCTACATCCAAAT
*
14417138 TGTCGTAACACCCTATCTGACTGGTGCATCTCCACGGTCGTGTAGTTGAT
131 TGTCGTAACACCCTATCTGACTGGTGCATCTCCACGGTCGCGTAGTTGAT
*
14417188 CCGATCTTCCCATATTTGGATGTACTCGGACCAGAATCTCGACCAATCCGTATTCAATTGCCGAA
1 CCGATCTTCCCACATTTGGATGTACTCGGACCAGAATCTCGACCAATCCGTATTCAATTGCCGAA
*
14417253 GGTCGATTTTGTGGTGATCATCAAACACCTCAGGTTCCACGGGAATCGGTTGTCTACATCCAAAT
66 GGTCGATTTTGTGGTGATCATCAAACACCTCAAGTTCCACGGGAATCGGTTGTCTACATCCAAAT
14417318 TGTCGTAACACCCTATCTGACTGGTGCATCTCCACGGTCGCGTAGTTGAT
131 TGTCGTAACACCCTATCTGACTGGTGCATCTCCACGGTCGCGTAGTTGAT
14417368 C
1 C
14417369 AACGCGACTT
Statistics
Matches: 176, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
180 176 1.00
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (180 bp):
CCGATCTTCCCACATTTGGATGTACTCGGACCAGAATCTCGACCAATCCGTATTCAATTGCCGAA
GGTCGATTTTGTGGTGATCATCAAACACCTCAAGTTCCACGGGAATCGGTTGTCTACATCCAAAT
TGTCGTAACACCCTATCTGACTGGTGCATCTCCACGGTCGCGTAGTTGAT
Found at i:14417722 original size:19 final size:20
Alignment explanation
Indices: 14417685--14417722 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
14417675 CTTTTATTTT
*
14417685 TAAAATCTACATAATAATTG
1 TAAAATCTACATAAAAATTG
14417705 TAAAATCTA-ATAAAAATT
1 TAAAATCTACATAAAAATT
14417723 TTACCTTGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.34
Consensus pattern (20 bp):
TAAAATCTACATAAAAATTG
Found at i:14418632 original size:11 final size:10
Alignment explanation
Indices: 14418616--14418664 Score: 55
Period size: 11 Copynumber: 4.8 Consensus size: 10
14418606 ATTTTTACGG
14418616 TTTAAAAAAA
1 TTTAAAAAAA
14418626 TTTTAAAAAAA
1 -TTTAAAAAAA
*
14418637 -ATAAAAAATA
1 TTTAAAAAA-A
*
14418647 TTTAAAAATA
1 TTTAAAAAAA
14418657 TTTAAAAA
1 TTTAAAAA
14418665 TATGGATTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
9 7 0.21
10 10 0.30
11 16 0.48
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (10 bp):
TTTAAAAAAA
Found at i:14418665 original size:10 final size:10
Alignment explanation
Indices: 14418621--14418667 Score: 60
Period size: 10 Copynumber: 4.8 Consensus size: 10
14418611 TACGGTTTAA
14418621 AAAAAT-TTT
1 AAAAATATTT
* * *
14418630 AAAAAAAATA
1 AAAAATATTT
14418640 AAAAATATTT
1 AAAAATATTT
14418650 AAAAATATTT
1 AAAAATATTT
14418660 AAAAATAT
1 AAAAATAT
14418668 GGATTTAAGA
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
9 5 0.16
10 26 0.84
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (10 bp):
AAAAATATTT
Found at i:14418722 original size:51 final size:51
Alignment explanation
Indices: 14418662--14418761 Score: 157
Period size: 51 Copynumber: 2.0 Consensus size: 51
14418652 AAATATTTAA
14418662 AAATATGGATTTAAGAGAAATTTA-AGAGGAACTTGAGAGCAAATTGAGATT
1 AAATATGGATTTAAGAGAAATTTAGA-AGGAACTTGAGAGCAAATTGAGATT
* * *
14418713 AAATATGGATTTGAGAGAAATTTGGAAGGAATTTGAGAGCAAATTGAGA
1 AAATATGGATTTAAGAGAAATTTAGAAGGAACTTGAGAGCAAATTGAGA
14418762 GGAAATTAAG
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
51 44 0.98
52 1 0.02
ACGTcount: A:0.44, C:0.03, G:0.26, T:0.27
Consensus pattern (51 bp):
AAATATGGATTTAAGAGAAATTTAGAAGGAACTTGAGAGCAAATTGAGATT
Done.