Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62811768
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 736185 characters in sequence are not A, C, G, or T
File 55 of 211
Found at i:14727520 original size:45 final size:44
Alignment explanation
Indices: 14727437--14727527 Score: 119
Period size: 45 Copynumber: 2.0 Consensus size: 44
14727427 ACCTCTATTC
* *
14727437 CATTCAACCAAACACAAGATTACTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTACTATTACACATCTATTCCATTA
*** *
14727481 CATTCAACCAAACAGTTGATTTGCTATTACACATCTATTCCATTA
1 CATTCAACCAAACACAAGA-TTACTATTACACATCTATTCCATTA
14727526 CA
1 CA
14727528 CCTCTATTCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 16 0.40
45 24 0.60
ACGTcount: A:0.35, C:0.27, G:0.05, T:0.32
Consensus pattern (44 bp):
CATTCAACCAAACACAAGATTACTATTACACATCTATTCCATTA
Found at i:14727527 original size:16 final size:16
Alignment explanation
Indices: 14727506--14727575 Score: 95
Period size: 16 Copynumber: 4.4 Consensus size: 16
14727496 TTGATTTGCT
* *
14727506 ATTACACATCTATTCC
1 ATTACACCTCTAATCC
*
14727522 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
14727538 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
*
14727554 AATACACCTCTAATCC
1 ATTACACCTCTAATCC
*
14727570 AATACA
1 ATTACA
14727576 GTGAACCAAA
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 51 1.00
ACGTcount: A:0.34, C:0.34, G:0.00, T:0.31
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:14728218 original size:3 final size:3
Alignment explanation
Indices: 14728210--14728239 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
14728200 AAGATTGAAA
14728210 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
14728240 ATAATCCCCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:14731682 original size:45 final size:44
Alignment explanation
Indices: 14731544--14731716 Score: 118
Period size: 45 Copynumber: 3.8 Consensus size: 44
14731534 AATCCAACAA
* * *
14731544 ATGGAATGGGCCTCTGG-CTGTGGGTACACAACAAA-AATCTTGTAG
1 ATGGAAT-TGCCTCTGGTC-GTGGATACACAACAAATAA-CTCGTAG
* * * * * * *
14731589 ATGAAATATGCTTCTAGTTGTGGATTTCACAGCAAATAA-TCCGCAG
1 ATGGAAT-TGCCTCTGGTCGTGGA-TACACAACAAATAACT-CGTAG
14731635 ATGGAATTCGCCTCTGGTCGTGGATACACAACAAATAACTCGTAG
1 ATGGAATT-GCCTCTGGTCGTGGATACACAACAAATAACTCGTAG
* * * *
14731680 ATGGAATCTACCTTTGGTTGTGGGTACACAAACAAAT
1 ATGGAAT-TGCCTCTGGTCGTGGATACAC-AACAAAT
14731717 TTTATAGATA
Statistics
Matches: 98, Mismatches: 22, Indels: 15
0.73 0.16 0.11
Matches are distributed among these distances:
45 57 0.58
46 39 0.40
47 2 0.02
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.27
Consensus pattern (44 bp):
ATGGAATTGCCTCTGGTCGTGGATACACAACAAATAACTCGTAG
Found at i:14731875 original size:34 final size:34
Alignment explanation
Indices: 14731802--14731893 Score: 105
Period size: 34 Copynumber: 2.7 Consensus size: 34
14731792 CATATCATTC
* *
14731802 CAGTAGCATTTAATATGCTTTTAATAAAATAATA
1 CAGTAGCAATTAATATGCTTATAATAAAATAATA
* * **
14731836 TAGTAGCAATTAATATGCTTATAAT-AATTCGTTA
1 CAGTAGCAATTAATATGCTTATAATAAAAT-AATA
*
14731870 CAGTAGCCATTAATATGCTTATAA
1 CAGTAGCAATTAATATGCTTATAA
14731894 GAGATCAACT
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
33 3 0.06
34 46 0.94
ACGTcount: A:0.40, C:0.11, G:0.11, T:0.38
Consensus pattern (34 bp):
CAGTAGCAATTAATATGCTTATAATAAAATAATA
Found at i:14742920 original size:6 final size:6
Alignment explanation
Indices: 14742911--14742938 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
14742901 AGTTTTAATT
14742911 TTTTAA TTTTAA TTTTAA TTTTAA TTTT
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTT
14742939 TCTCTCTCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (6 bp):
TTTTAA
Found at i:14742922 original size:14 final size:14
Alignment explanation
Indices: 14742893--14742939 Score: 62
Period size: 12 Copynumber: 3.4 Consensus size: 14
14742883 TGGAGTGGGG
*
14742893 ATTTTGTAAGTTTTA
1 ATTTTTTAA-TTTTA
14742908 ATTTTTTAATTTTA
1 ATTTTTTAATTTTA
14742922 A--TTTTAATTTTA
1 ATTTTTTAATTTTA
14742934 ATTTTT
1 ATTTTT
14742940 CTCTCTCTTC
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
12 12 0.41
14 9 0.31
15 8 0.28
ACGTcount: A:0.28, C:0.00, G:0.04, T:0.68
Consensus pattern (14 bp):
ATTTTTTAATTTTA
Found at i:14747206 original size:43 final size:43
Alignment explanation
Indices: 14747142--14747224 Score: 103
Period size: 43 Copynumber: 1.9 Consensus size: 43
14747132 CTCATAAAAA
* * *
14747142 GCGCTTTTCCTACAAATGCCGCTATAGAACATGATTTTTAACG
1 GCGCTTTTCCTACAAACGCCGCAAAAGAACATGATTTTTAACG
** * *
14747185 GCGCTTTTTTTACAAACGCCGCAAAAGATCATGTTTTTTA
1 GCGCTTTTCCTACAAACGCCGCAAAAGAACATGATTTTTA
14747225 GTGGCATTTT
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
43 33 1.00
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.35
Consensus pattern (43 bp):
GCGCTTTTCCTACAAACGCCGCAAAAGAACATGATTTTTAACG
Found at i:14747363 original size:43 final size:43
Alignment explanation
Indices: 14747208--14747364 Score: 174
Period size: 43 Copynumber: 3.7 Consensus size: 43
14747198 AAACGCCGCA
* * * * * *
14747208 AAAGATCATGTTTTTTAGTGGCATTTTTAGTAAAAGCGCAGCT
1 AAAGATCATGTTCTATAGCGGCGTTTGTAGTAAAAGCGCTGCT
* *
14747251 AAAGATCATGTTCTATAGCGGCGTTTCTAATAAAAGCG-TCGCT
1 AAAGATCATGTTCTATAGCGGCGTTTGTAGTAAAAGCGCT-GCT
* * *
14747294 AAAGATCATG-TCATTTAACGGCGTTTGTTGTAAAAGCGCTGCT
1 AAAGATCATGTTC-TATAGCGGCGTTTGTAGTAAAAGCGCTGCT
*
14747337 AAAGACCATGTTCTATAGCGGCGTTTGT
1 AAAGATCATGTTCTATAGCGGCGTTTGT
14747365 GGGAAAACGC
Statistics
Matches: 95, Mismatches: 15, Indels: 8
0.81 0.13 0.07
Matches are distributed among these distances:
42 2 0.02
43 90 0.95
44 3 0.03
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (43 bp):
AAAGATCATGTTCTATAGCGGCGTTTGTAGTAAAAGCGCTGCT
Found at i:14751024 original size:24 final size:24
Alignment explanation
Indices: 14750976--14751022 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
14750966 ACTGGTCACA
*
14750976 GAGAGAATTGAGGAGGGATATTTG
1 GAGAGAATTGAGGAGGAATATTTG
*
14751000 GAGAGATTTGAGGAGAGAATATT
1 GAGAGAATTGAGGAG-GAATATT
14751023 GGGATTTGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.36, C:0.00, G:0.38, T:0.26
Consensus pattern (24 bp):
GAGAGAATTGAGGAGGAATATTTG
Found at i:14751664 original size:27 final size:27
Alignment explanation
Indices: 14751633--14751853 Score: 289
Period size: 27 Copynumber: 8.2 Consensus size: 27
14751623 TTACACTGTT
* *
14751633 ATGACCGAAATAGCCCCATAGGGTAGA
1 ATGACCGAAATACCCCCATAGGGTAAA
14751660 ATGACCGAAATACCCCCATAGGGTAAA
1 ATGACCGAAATACCCCCATAGGGTAAA
14751687 ATGACCGAAATACCCCCATAGGGTAAA
1 ATGACCGAAATACCCCCATAGGGTAAA
14751714 ATGACCGAAATACCCCCATAGGGTAAA
1 ATGACCGAAATACCCCCATAGGGTAAA
* ** * * *
14751741 ATAACTAAAATACCCTCACAGGGTAGA
1 ATGACCGAAATACCCCCATAGGGTAAA
* *
14751768 ATGACTGAAATACCCCTATAGGGTAAA
1 ATGACCGAAATACCCCCATAGGGTAAA
* * * * * *
14751795 ATGATCGAAATACCCTCACAAGATAGA
1 ATGACCGAAATACCCCCATAGGGTAAA
*
14751822 ATGATCGAAATACCCCCATAGGGTAAA
1 ATGACCGAAATACCCCCATAGGGTAAA
14751849 ATGAC
1 ATGAC
14751854 TGTTATATCC
Statistics
Matches: 166, Mismatches: 28, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 166 1.00
ACGTcount: A:0.41, C:0.23, G:0.19, T:0.17
Consensus pattern (27 bp):
ATGACCGAAATACCCCCATAGGGTAAA
Found at i:14760767 original size:42 final size:42
Alignment explanation
Indices: 14760671--14760818 Score: 136
Period size: 42 Copynumber: 3.5 Consensus size: 42
14760661 ACATGGCTTG
* * * * * ***
14760671 GACACATGCCCATGTCCTTGTCCGTGTGGCTTACATGGCCTA
1 GACACACGCCCATATCCTTGCCCGTATGGCTCACACAACCTA
* *
14760713 GACATACACCCATATCCTTGCCCGTATGGCTCACACAACCT-
1 GACACACGCCCATATCCTTGCCCGTATGGCTCACACAACCTA
* * *
14760754 GAACACACGCCCATATCCTTGCCCGTGTGGTTCACACAGCCTA
1 G-ACACACGCCCATATCCTTGCCCGTATGGCTCACACAACCTA
* * *
14760797 GGCACACGCCCATGTCCCTGCC
1 GACACACGCCCATATCCTTGCC
14760819 GTGTGGTCTT
Statistics
Matches: 86, Mismatches: 18, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
41 1 0.01
42 84 0.98
43 1 0.01
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.22
Consensus pattern (42 bp):
GACACACGCCCATATCCTTGCCCGTATGGCTCACACAACCTA
Found at i:14760934 original size:61 final size:61
Alignment explanation
Indices: 14760853--14760985 Score: 230
Period size: 61 Copynumber: 2.2 Consensus size: 61
14760843 AAGTTACAAG
* *
14760853 GCCTAGACACATACCCGTGTCTATTTCCTGTGTGAACCTTGTACTAACATGGCCACACACA
1 GCCTGGACACATACCCGTGTCTATTTCCTGTGTGAACCCTGTACTAACATGGCCACACACA
* *
14760914 GCCTGGACACATGCCCGTGTCTGTTTCCTGTGTGAACCCTGTACTAACATGGCCACACACA
1 GCCTGGACACATACCCGTGTCTATTTCCTGTGTGAACCCTGTACTAACATGGCCACACACA
14760975 GCCTGGACACA
1 GCCTGGACACA
14760986 CGTTCGTGTC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
61 68 1.00
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (61 bp):
GCCTGGACACATACCCGTGTCTATTTCCTGTGTGAACCCTGTACTAACATGGCCACACACA
Found at i:14761008 original size:61 final size:61
Alignment explanation
Indices: 14760882--14761008 Score: 182
Period size: 61 Copynumber: 2.1 Consensus size: 61
14760872 TCTATTTCCT
* * ** * *
14760882 GTGTGAACCTTGTACTAACATGGCCACACACAGCCTGGACACATGCCCGTGTCTGTTTCCT
1 GTGTGAACCCTGTACTAACATGGCCACACACAGCCTGGACACACGCCCGTGTCCCTTGCCC
**
14760943 GTGTGAACCCTGTACTAACATGGCCACACACAGCCTGGACACACGTTCGTGTCCCTTGCCC
1 GTGTGAACCCTGTACTAACATGGCCACACACAGCCTGGACACACGCCCGTGTCCCTTGCCC
14761004 GTGTG
1 GTGTG
14761009 TTCAAATTCA
Statistics
Matches: 58, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
61 58 1.00
ACGTcount: A:0.20, C:0.32, G:0.23, T:0.24
Consensus pattern (61 bp):
GTGTGAACCCTGTACTAACATGGCCACACACAGCCTGGACACACGCCCGTGTCCCTTGCCC
Found at i:14779328 original size:13 final size:13
Alignment explanation
Indices: 14779310--14779335 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
14779300 CTATACTTGA
14779310 GGGAAATAAATTC
1 GGGAAATAAATTC
14779323 GGGAAATAAATTC
1 GGGAAATAAATTC
14779336 TAAGTGACAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.23, T:0.23
Consensus pattern (13 bp):
GGGAAATAAATTC
Found at i:14786002 original size:5 final size:5
Alignment explanation
Indices: 14785992--14786020 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
14785982 CCAGACTATT
14785992 CTTTC CTTTC CTTTC CTTTC CTTTC CTTT
1 CTTTC CTTTC CTTTC CTTTC CTTTC CTTT
14786021 GCTTCTTCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (5 bp):
CTTTC
Found at i:14795801 original size:72 final size:72
Alignment explanation
Indices: 14795684--14795827 Score: 270
Period size: 72 Copynumber: 2.0 Consensus size: 72
14795674 AAGCCAGGAG
14795684 AAAGTGAAATTCAGTGGTTTAACTATGGCAGAATAGAAGATGACTCATGCTTGACCACAAAAACA
1 AAAGTGAAATTCAGTGGTTTAACTATGGCAGAATAGAAGATGACTCATGCTTGACCACAAAAACA
14795749 AGTGGAA
66 AGTGGAA
* *
14795756 AAAGTGAAATTCAGTGGTTTAACTATGGTAGAATAGAAGATGACTCATGCTTGACCACAAAACCA
1 AAAGTGAAATTCAGTGGTTTAACTATGGCAGAATAGAAGATGACTCATGCTTGACCACAAAAACA
14795821 AGTGGAA
66 AGTGGAA
14795828 CTTGCCTGAT
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
72 70 1.00
ACGTcount: A:0.41, C:0.14, G:0.22, T:0.23
Consensus pattern (72 bp):
AAAGTGAAATTCAGTGGTTTAACTATGGCAGAATAGAAGATGACTCATGCTTGACCACAAAAACA
AGTGGAA
Found at i:14795962 original size:30 final size:31
Alignment explanation
Indices: 14795926--14795998 Score: 94
Period size: 31 Copynumber: 2.4 Consensus size: 31
14795916 TGTAATACAC
* **
14795926 AAACTTTAATTT-GATACAATTATACACATG
1 AAACTTTGATTTGGATACAACCATACACATG
*
14795956 AAACTTTGATTTGGATTCAACCATACACATG
1 AAACTTTGATTTGGATACAACCATACACATG
*
14795987 AAAATTTGATTT
1 AAACTTTGATTT
14795999 TGATTTTGAT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
30 11 0.30
31 26 0.70
ACGTcount: A:0.40, C:0.14, G:0.10, T:0.37
Consensus pattern (31 bp):
AAACTTTGATTTGGATACAACCATACACATG
Found at i:14796025 original size:21 final size:21
Alignment explanation
Indices: 14795995--14796034 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
14795985 TGAAAATTTG
14795995 ATTTTGATTTTG-ATTCAATAA
1 ATTTTGA-TTTGAATTCAATAA
*
14796016 ATTTTTATTTGAATTCAAT
1 ATTTTGATTTGAATTCAAT
14796035 TATACACATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.33, C:0.05, G:0.07, T:0.55
Consensus pattern (21 bp):
ATTTTGATTTGAATTCAATAA
Found at i:14798474 original size:20 final size:20
Alignment explanation
Indices: 14798449--14798489 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
14798439 AGTCTTCCTT
14798449 AGTTCATTCTTAAAACCCTG
1 AGTTCATTCTTAAAACCCTG
14798469 AGTTCATTCTTAAAACCCTG
1 AGTTCATTCTTAAAACCCTG
14798489 A
1 A
14798490 TAAATAGCTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.32, C:0.24, G:0.10, T:0.34
Consensus pattern (20 bp):
AGTTCATTCTTAAAACCCTG
Found at i:14805074 original size:24 final size:23
Alignment explanation
Indices: 14804999--14805080 Score: 92
Period size: 24 Copynumber: 3.5 Consensus size: 23
14804989 CTCGAGGTCA
* * * *
14804999 AATGATTGTTTTGTCTGTGGTTA
1 AATGATTGATTTGTCTATGTTTG
14805022 AATGATTGATTTGTCTATGTTTGG
1 AATGATTGATTTGTCTATGTTT-G
*
14805046 TATGATTGATTTGTCTATGATTTG
1 AATGATTGATTTGTCTATG-TTTG
*
14805070 AATGACTGATT
1 AATGATTGATT
14805081 CTGAGTATGG
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
23 19 0.38
24 28 0.56
25 3 0.06
ACGTcount: A:0.22, C:0.05, G:0.23, T:0.50
Consensus pattern (23 bp):
AATGATTGATTTGTCTATGTTTG
Found at i:14805261 original size:26 final size:26
Alignment explanation
Indices: 14805206--14805261 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
14805196 ATACTATTAC
* * ** *
14805206 TGGCTGCTTTACTGCGATATTGTTGC
1 TGGCAGCTTTACTGCGATACTACTGA
14805232 TGGCAGCTTTACTGCGATACTACTGA
1 TGGCAGCTTTACTGCGATACTACTGA
14805258 TGGC
1 TGGC
14805262 TTTGTGCCGA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.16, C:0.21, G:0.27, T:0.36
Consensus pattern (26 bp):
TGGCAGCTTTACTGCGATACTACTGA
Found at i:14805473 original size:32 final size:32
Alignment explanation
Indices: 14805252--14805475 Score: 263
Period size: 32 Copynumber: 7.0 Consensus size: 32
14805242 ACTGCGATAC
* * *
14805252 TACTGATGGCTTTGTGCCGATCATAGTACCGA
1 TACTGATGGCTTTGTGCCGATCATATTACTGT
* *
14805284 TACTGATGGCTTTATGCCGATCATATTACCGT
1 TACTGATGGCTTTGTGCCGATCATATTACTGT
* * *
14805316 TACTGATGGCTATGTACCGATCAT-TTCATTGT
1 TACTGATGGCTTTGTGCCGATCATATT-ACTGT
* *
14805348 TACTGATGG-TTGTGTCCCGATCATATCACTGT
1 TACTGATGGCTT-TGTGCCGATCATATTACTGT
*
14805380 TACTGATGGCTTTGTGCCGATCATGTTACTGT
1 TACTGATGGCTTTGTGCCGATCATATTACTGT
* * **
14805412 TATTGATGGCTATGTGCCGATCATATTACTAC
1 TACTGATGGCTTTGTGCCGATCATATTACTGT
* *
14805444 TACTGATGGCTTTGTGCCAATCACATTACTGT
1 TACTGATGGCTTTGTGCCGATCATATTACTGT
14805476 ACTTATGACT
Statistics
Matches: 162, Mismatches: 26, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
31 3 0.02
32 156 0.96
33 3 0.02
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.38
Consensus pattern (32 bp):
TACTGATGGCTTTGTGCCGATCATATTACTGT
Found at i:14805565 original size:26 final size:26
Alignment explanation
Indices: 14805536--14805588 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
14805526 GGCTCTTAGC
* *
14805536 CATTCTGACTACT-GACAGCTCTGCTG
1 CATTATGACTACTAG-CAGCTATGCTG
*
14805562 CATTATTACTACTAGCAGCTATGCTG
1 CATTATGACTACTAGCAGCTATGCTG
14805588 C
1 C
14805589 GATATTAGTG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.23, C:0.28, G:0.17, T:0.32
Consensus pattern (26 bp):
CATTATGACTACTAGCAGCTATGCTG
Found at i:14811112 original size:43 final size:43
Alignment explanation
Indices: 14811050--14811164 Score: 128
Period size: 43 Copynumber: 2.7 Consensus size: 43
14811040 AAGCGTTTCT
* * *
14811050 ATGTAAGACCACGTCTGGGACGTTGGCATAGA-CTTGTGTTTTC
1 ATGTAAGACCACGTCTGGGACGTTGGCATAGATC-AGTGATTAC
* * *
14811093 GTGTAAGACC-CTGTTTGGGACAG-TGGCATCGATCAGTGATTAC
1 ATGTAAGACCAC-GTCTGGGAC-GTTGGCATAGATCAGTGATTAC
14811136 ATGTAAGACCACGTCTGGGACGTTGGCAT
1 ATGTAAGACCACGTCTGGGACGTTGGCAT
14811165 TGTACGAGCT
Statistics
Matches: 59, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.03
43 54 0.92
44 3 0.05
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.29
Consensus pattern (43 bp):
ATGTAAGACCACGTCTGGGACGTTGGCATAGATCAGTGATTAC
Found at i:14814547 original size:17 final size:18
Alignment explanation
Indices: 14814515--14814548 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
14814505 AATTTCTTTT
14814515 CAATTTATACCCTAATTC
1 CAATTTATACCCTAATTC
*
14814533 CAATTTA-ATCCTAATT
1 CAATTTATACCCTAATT
14814549 AACTCATTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.35, C:0.24, G:0.00, T:0.41
Consensus pattern (18 bp):
CAATTTATACCCTAATTC
Found at i:14815034 original size:15 final size:14
Alignment explanation
Indices: 14815016--14815112 Score: 69
Period size: 15 Copynumber: 6.7 Consensus size: 14
14815006 TTTATTTTAT
*
14815016 ATATATTAGTTAATA
1 ATATATTA-ATAATA
14815031 ATATTATTAATAATA
1 ATA-TATTAATAATA
14815046 ATATAATATAAT-ATA
1 ATAT-AT-TAATAATA
14815061 ATATAATATAAT-ATA
1 ATAT-AT-TAATAATA
14815076 ATATAATATAAT-ATA
1 ATAT-AT-TAATAATA
*
14815091 ATATAAT-ATAATA
1 ATATATTAATAATA
14815104 ATAT-TTAAT
1 ATATATTAAT
14815113 TCATAAATAT
Statistics
Matches: 74, Mismatches: 3, Indels: 12
0.83 0.03 0.13
Matches are distributed among these distances:
12 3 0.04
13 10 0.14
14 2 0.03
15 50 0.68
16 9 0.12
ACGTcount: A:0.56, C:0.00, G:0.01, T:0.43
Consensus pattern (14 bp):
ATATATTAATAATA
Found at i:14815053 original size:5 final size:5
Alignment explanation
Indices: 14815028--14815103 Score: 127
Period size: 5 Copynumber: 15.2 Consensus size: 5
14815018 ATATTAGTTA
*
14815028 ATAAT ATTAT -TAAT AATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
1 ATAAT ATAAT ATAAT -ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
14815078 ATAAT ATAAT ATAAT ATAAT ATAAT A
1 ATAAT ATAAT ATAAT ATAAT ATAAT A
14815104 ATATTTAATT
Statistics
Matches: 67, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
4 3 0.04
5 60 0.90
6 4 0.06
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
ATAAT
Found at i:14816612 original size:70 final size:70
Alignment explanation
Indices: 14816463--14816604 Score: 284
Period size: 70 Copynumber: 2.0 Consensus size: 70
14816453 TTCAATAGCA
14816463 ATCAAAGCAAATCAATTCATACAAAAATTATATTTTCACCTATATATTCAATCATGCAATTAATA
1 ATCAAAGCAAATCAATTCATACAAAAATTATATTTTCACCTATATATTCAATCATGCAATTAATA
14816528 TGTAT
66 TGTAT
14816533 ATCAAAGCAAATCAATTCATACAAAAATTATATTTTCACCTATATATTCAATCATGCAATTAATA
1 ATCAAAGCAAATCAATTCATACAAAAATTATATTTTCACCTATATATTCAATCATGCAATTAATA
14816598 TGTAT
66 TGTAT
14816603 AT
1 AT
14816605 GTAAGCAATT
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 72 1.00
ACGTcount: A:0.44, C:0.15, G:0.04, T:0.36
Consensus pattern (70 bp):
ATCAAAGCAAATCAATTCATACAAAAATTATATTTTCACCTATATATTCAATCATGCAATTAATA
TGTAT
Found at i:14830540 original size:12 final size:13
Alignment explanation
Indices: 14830523--14830554 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
14830513 AGAGAAATAA
14830523 AATTTAAGTA-AG
1 AATTTAAGTAGAG
14830535 AATTTAA-TAGAG
1 AATTTAAGTAGAG
14830547 AATTTAAG
1 AATTTAAG
14830555 ATATTTTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 2 0.11
12 16 0.89
ACGTcount: A:0.50, C:0.00, G:0.16, T:0.34
Consensus pattern (13 bp):
AATTTAAGTAGAG
Found at i:14839885 original size:41 final size:40
Alignment explanation
Indices: 14839835--14840038 Score: 200
Period size: 41 Copynumber: 5.0 Consensus size: 40
14839825 GCATGTATAT
* *
14839835 TGCCAGTGAATCAATTCAGGCTTAAAGCTTAGCAGGCTAAG
1 TGCCGGTGAATCAA-TCAGGCTTAAAGCCTAGCAGGCTAAG
*
14839876 TGCCGGTGAACTGAATCAGG-TTATAAGCCTAGCAGGCTAAG
1 TGCCGGTGAA-TCAATCAGGCTTA-AAGCCTAGCAGGCTAAG
*
14839917 TGCCGGTG-ATCTGAATCAGGCTTTAAGCCTAGCAGGCTAAG
1 TGCCGGTGAATC--AATCAGGCTTAAAGCCTAGCAGGCTAAG
* * *
14839958 TGCCGGTAAACTGAATTAGGC-TATAAGCCTAGCAGGCTAAG
1 TGCCGGTGAA-TCAATCAGGCTTA-AAGCCTAGCAGGCTAAG
* * * *
14839999 TGCCGGTG-ATCTGAATCAGACTTTAAGCTTAGTAGGCTAA
1 TGCCGGTGAATC--AATCAGGCTTAAAGCCTAGCAGGCTAA
14840039 CTGTCAGTGA
Statistics
Matches: 136, Mismatches: 16, Indels: 22
0.78 0.09 0.13
Matches are distributed among these distances:
39 2 0.01
40 6 0.04
41 120 0.88
42 7 0.05
43 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.25
Consensus pattern (40 bp):
TGCCGGTGAATCAATCAGGCTTAAAGCCTAGCAGGCTAAG
Found at i:14839950 original size:82 final size:82
Alignment explanation
Indices: 14839850--14840038 Score: 315
Period size: 82 Copynumber: 2.3 Consensus size: 82
14839840 GTGAATCAAT
* * *
14839850 TCAGGCTTAAAGCTTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGTTATAAGCCTAGCAGGCTA
1 TCAGGCTTTAAGCTTAGCAGGCTAAGTGCCGGTAAACTGAATCAGGCTATAAGCCTAGCAGGCTA
14839915 AGTGCCGGTGATCTGAA
66 AGTGCCGGTGATCTGAA
* *
14839932 TCAGGCTTTAAGCCTAGCAGGCTAAGTGCCGGTAAACTGAATTAGGCTATAAGCCTAGCAGGCTA
1 TCAGGCTTTAAGCTTAGCAGGCTAAGTGCCGGTAAACTGAATCAGGCTATAAGCCTAGCAGGCTA
14839997 AGTGCCGGTGATCTGAA
66 AGTGCCGGTGATCTGAA
* *
14840014 TCAGACTTTAAGCTTAGTAGGCTAA
1 TCAGGCTTTAAGCTTAGCAGGCTAA
14840039 CTGTCAGTGA
Statistics
Matches: 99, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
82 99 1.00
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.24
Consensus pattern (82 bp):
TCAGGCTTTAAGCTTAGCAGGCTAAGTGCCGGTAAACTGAATCAGGCTATAAGCCTAGCAGGCTA
AGTGCCGGTGATCTGAA
Found at i:14840265 original size:38 final size:38
Alignment explanation
Indices: 14840221--14840300 Score: 108
Period size: 38 Copynumber: 2.1 Consensus size: 38
14840211 AATTGTTTGA
* *
14840221 TATATATATGTATGCATTCGGCATATGTGAATT-ATAAG
1 TATATATATATATGCATTCGGCACATGTG-ATTGATAAG
* *
14840259 TATATATATATGTGCATTCGGCACATGTGGTTGATAAG
1 TATATATATATATGCATTCGGCACATGTGATTGATAAG
14840297 TATA
1 TATA
14840301 ATTATTTGCT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 2 0.05
38 35 0.95
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.39
Consensus pattern (38 bp):
TATATATATATATGCATTCGGCACATGTGATTGATAAG
Found at i:14841456 original size:13 final size:13
Alignment explanation
Indices: 14841416--14841471 Score: 62
Period size: 13 Copynumber: 4.3 Consensus size: 13
14841406 TTGGGTTGAG
14841416 AAATTAATTAGA--
1 AAATTAATTA-ATT
*
14841428 AAATTAATTTAGTT
1 AAATTAA-TTAATT
14841442 AAATTAATTAATT
1 AAATTAATTAATT
*
14841455 AAATTAATTGATT
1 AAATTAATTAATT
14841468 AAAT
1 AAAT
14841472 AAATAATATT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
12 7 0.18
13 24 0.63
14 7 0.18
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (13 bp):
AAATTAATTAATT
Found at i:14841469 original size:26 final size:26
Alignment explanation
Indices: 14841416--14841471 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
14841406 TTGGGTTGAG
*
14841416 AAATTAATTAGAAAATTAATTTAGTT
1 AAATTAATTAGAAAATTAATTGAGTT
14841442 AAATTAATTA-ATTAAATTAATTGA-TT
1 AAATTAATTAGA--AAATTAATTGAGTT
14841468 AAAT
1 AAAT
14841472 AAATAATATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
25 1 0.04
26 16 0.59
27 10 0.37
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (26 bp):
AAATTAATTAGAAAATTAATTGAGTT
Found at i:14844123 original size:7 final size:7
Alignment explanation
Indices: 14844111--14844148 Score: 76
Period size: 7 Copynumber: 5.4 Consensus size: 7
14844101 AGGACTCAGA
14844111 ATTATAG
1 ATTATAG
14844118 ATTATAG
1 ATTATAG
14844125 ATTATAG
1 ATTATAG
14844132 ATTATAG
1 ATTATAG
14844139 ATTATAG
1 ATTATAG
14844146 ATT
1 ATT
14844149 TATTGATAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.42, C:0.00, G:0.13, T:0.45
Consensus pattern (7 bp):
ATTATAG
Found at i:14847255 original size:6 final size:6
Alignment explanation
Indices: 14847234--14847267 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
14847224 GCTTAGCTAG
14847234 AAAAG- AAAAG- AAAAGA AAAAGA AAAAGA AAAAGA
1 AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA
14847268 TGATTAGAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 10 0.36
6 18 0.64
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (6 bp):
AAAAGA
Found at i:14861171 original size:50 final size:50
Alignment explanation
Indices: 14861055--14861345 Score: 402
Period size: 50 Copynumber: 5.8 Consensus size: 50
14861045 GATCATAATA
* * * ** * *
14861055 TGCCAAAGCCATGTCCCAGACGTGGTCTTACATTGGATGTACTCATGTCAG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCT-CTCATCTCGG
* **
14861106 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
14861156 TGCCAACGCCATGTCCCAGACATGGTCTTATATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * * * *
14861206 AGCCCATGCCATGTCCCAAACATGGTCTTACAGGGGACCTATCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
14861256 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCACATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
14861306 TGCCAATGCCATGTCTCAGACATGGTCTTACATGGGACCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCT
14861346 TTTTACCCAA
Statistics
Matches: 211, Mismatches: 29, Indels: 1
0.88 0.12 0.00
Matches are distributed among these distances:
50 179 0.85
51 32 0.15
ACGTcount: A:0.21, C:0.31, G:0.23, T:0.25
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:14861734 original size:29 final size:31
Alignment explanation
Indices: 14861684--14861741 Score: 75
Period size: 30 Copynumber: 1.9 Consensus size: 31
14861674 CCTCGACTCT
* *
14861684 AACTTTTTCAAAATTATGA-TTTTGCCCCTA
1 AACTTTTGCAAAATTATCATTTTTGCCCCTA
*
14861714 AACTTTTGCATAATTA-CATTTTTGCCCC
1 AACTTTTGCAAAATTATCATTTTTGCCCC
14861742 AAGGCTCGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 1 0.04
30 23 0.96
ACGTcount: A:0.28, C:0.22, G:0.07, T:0.43
Consensus pattern (31 bp):
AACTTTTGCAAAATTATCATTTTTGCCCCTA
Found at i:14868936 original size:50 final size:50
Alignment explanation
Indices: 14868692--14868979 Score: 411
Period size: 49 Copynumber: 5.8 Consensus size: 50
14868682 GATCATAATA
* * ** *
14868692 TGCCAAAGCCATGTCCCAGACGTGGTCTTACATGGGATGTACTCATGTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCT-CTCATCTCGG
* *
14868743 TGCCCATGCCATGTCCCAGACATGGTCTTAC-GGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
14868792 TGCCAACGCCATGTCCCAGACATGGTCTTATAT-GGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * *
14868841 TGCCCATGCCATGTCCCA-ACATGGTCTTACAGGGGACCTATCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
14868890 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCACATCTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
14868940 TGCCAATGCCATGTCTCAGACATGGTCTTACATGGGACCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCT
14868980 TTTTACCCAA
Statistics
Matches: 212, Mismatches: 22, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
48 12 0.06
49 101 0.48
50 71 0.33
51 28 0.13
ACGTcount: A:0.20, C:0.31, G:0.23, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:14869363 original size:29 final size:30
Alignment explanation
Indices: 14869314--14869370 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
14869304 CCTCGACTCT
*
14869314 AACTTTTCAAAATTATGA-TTTTGCCCCTA
1 AACTTTTCAAAATTATCATTTTTGCCCCTA
*
14869343 AACTTTTGCATAATTA-CATTTTTGCCCC
1 AACTTTT-CAAAATTATCATTTTTGCCCC
14869371 AAGGCTCGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 8 0.33
30 16 0.67
ACGTcount: A:0.28, C:0.23, G:0.07, T:0.42
Consensus pattern (30 bp):
AACTTTTCAAAATTATCATTTTTGCCCCTA
Found at i:14877056 original size:13 final size:13
Alignment explanation
Indices: 14877038--14877062 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14877028 TGCTCTTGTT
14877038 TATTCTCTTTGAA
1 TATTCTCTTTGAA
14877051 TATTCTCTTTGA
1 TATTCTCTTTGA
14877063 TTCTTTTGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.16, G:0.08, T:0.56
Consensus pattern (13 bp):
TATTCTCTTTGAA
Found at i:14877987 original size:50 final size:50
Alignment explanation
Indices: 14877926--14878099 Score: 186
Period size: 50 Copynumber: 3.5 Consensus size: 50
14877916 TTGGGGAAAC
* * * *
14877926 AAGATTTGCCGTCGTAGCTTTAATCTGTTTCATTGCACTGCAAAGGAAGT
1 AAGATTCGCCGTTGTAGCTTTAATCTGTTTCACTGCACTGCAAGGGAAGT
* * * * ** *
14877976 AAGATTCGCCGTTGTAGCTTTAGTCTTTTTAACTGCAATGCTGGGGAAGC
1 AAGATTCGCCGTTGTAGCTTTAATCTGTTTCACTGCACTGCAAGGGAAGT
* * * * *
14878026 AAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGCACTGCCAGGGAAAT
1 AAGATTCGCCGTTGTAGCTTTAATCTGTTTCACTGCACTGCAAGGGAAGT
**
14878076 AAGATTCGCTATTGTAGCTTTAAT
1 AAGATTCGCCGTTGTAGCTTTAAT
14878100 GTCGGGGAAG
Statistics
Matches: 98, Mismatches: 26, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
50 98 1.00
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.34
Consensus pattern (50 bp):
AAGATTCGCCGTTGTAGCTTTAATCTGTTTCACTGCACTGCAAGGGAAGT
Found at i:14878081 original size:100 final size:100
Alignment explanation
Indices: 14877908--14878097 Score: 254
Period size: 100 Copynumber: 1.9 Consensus size: 100
14877898 TTCTATCTGG
* * ** * *
14877908 CTGCAGTGTTGGGGAAACAAGATTTGCCGTCGTAGCTTTAATCTGTTTCATTGCACTGCAAAGGA
1 CTGCAATGCTGGGGAAACAAGATTCACCGTCGTAGCTTTAATCTGTTCCACTGCACTGCAAAGGA
* *
14877973 AGTAAGATTCGCCGTTGTAGCTTTAGTCTTTTTAA
66 AATAAGATTCGCCATTGTAGCTTTAGTCTTTTTAA
* * * * *
14878008 CTGCAATGCTGGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGCACTGCCAGGGA
1 CTGCAATGCTGGGGAAACAAGATTCACCGTCGTAGCTTTAATCTGTTCCACTGCACTGCAAAGGA
*
14878073 AATAAGATTCGCTATTGTAGCTTTA
66 AATAAGATTCGCCATTGTAGCTTTA
14878098 ATGTCGGGGA
Statistics
Matches: 76, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
100 76 1.00
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (100 bp):
CTGCAATGCTGGGGAAACAAGATTCACCGTCGTAGCTTTAATCTGTTCCACTGCACTGCAAAGGA
AATAAGATTCGCCATTGTAGCTTTAGTCTTTTTAA
Found at i:14878161 original size:85 final size:85
Alignment explanation
Indices: 14878018--14878184 Score: 280
Period size: 85 Copynumber: 2.0 Consensus size: 85
14878008 CTGCAATGCT
*
14878018 GGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGCACTGCCAGGGAAATAAGATTC
1 GGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCAGGGAAATAAGATTC
14878083 GCTATTGTAGCTTTAATGTC
66 GCTATTGTAGCTTTAATGTC
* * **
14878103 GGGGAAGTAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACCGCTTGGGAAATAAGATTC
1 GGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCAGGGAAATAAGATTC
*
14878168 GCTGTTGTAGCTTTAAT
66 GCTATTGTAGCTTTAAT
14878185 CTTTTTTAAC
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
85 76 1.00
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.32
Consensus pattern (85 bp):
GGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCAGGGAAATAAGATTC
GCTATTGTAGCTTTAATGTC
Found at i:14878429 original size:44 final size:44
Alignment explanation
Indices: 14878293--14878528 Score: 134
Period size: 44 Copynumber: 5.4 Consensus size: 44
14878283 GCCCCATTGT
* * * * *
14878293 AACTTCAGGGGGATAAGACTTGTCT-TCTCAGTCTGCTCCACTGC
1 AACTTCAGGGAGATAAGA-TTATCTCTTTCAATCTGCTCCACTAC
* * ** * *
14878337 AACCTCAGGGAGATAAG---A-C-CTTATGCGATCCACTCTACTGC
1 AACTTCAGGGAGATAAGATTATCTCTT-T-CAATCTGCTCCACTAC
* *
14878378 AACTTCAGAGAGATAAGATCTAT-TACTTT-AATCTGCTCCATTAC
1 AACTTCAGGGAGATAAGAT-TATCT-CTTTCAATCTGCTCCACTAC
* * *
14878422 AACTTCAGGGAGATAGGATTATCTTTTTCAATCTGCTCCACTGC
1 AACTTCAGGGAGATAAGATTATCTCTTTCAATCTGCTCCACTAC
* * *
14878466 AACCTT-AGGGAGATAAGATTTATCAT-TTTCGATCTGCCCCACTTC
1 AA-CTTCAGGGAGATAAGA-TTATC-TCTTTCAATCTGCTCCACTAC
*
14878511 AACCTCAAGGG-GATAAGA
1 AACTTC-AGGGAGATAAGA
14878529 CCTGCTTACT
Statistics
Matches: 148, Mismatches: 27, Indels: 33
0.71 0.13 0.16
Matches are distributed among these distances:
39 2 0.01
40 1 0.01
41 26 0.18
43 6 0.04
44 70 0.47
45 34 0.23
46 6 0.04
47 3 0.02
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.29
Consensus pattern (44 bp):
AACTTCAGGGAGATAAGATTATCTCTTTCAATCTGCTCCACTAC
Found at i:14879026 original size:44 final size:44
Alignment explanation
Indices: 14878978--14879226 Score: 347
Period size: 44 Copynumber: 5.7 Consensus size: 44
14878968 TTCAACCTGC
* * * *
14878978 TCCACTGTTGCTCAAGGAGCTAGGACTTACAATCTTCTACCTAT
1 TCCACTGCTGTTCAGGGAGCTAGGACTTACAATCTTCCACCTAT
* *
14879022 TCCACTGCTGTTCAGGGAGCTAGGACTTACAACCTTCCACTTAT
1 TCCACTGCTGTTCAGGGAGCTAGGACTTACAATCTTCCACCTAT
* * *
14879066 TCCACTGCTGGTCAGGGAGCTAGGATTTACAATCTTCCGCCTAT
1 TCCACTGCTGTTCAGGGAGCTAGGACTTACAATCTTCCACCTAT
* *
14879110 TCCACTGCTGTTCAGGGAGCTAGGACTTACAGTCTTCTACCTAT
1 TCCACTGCTGTTCAGGGAGCTAGGACTTACAATCTTCCACCTAT
* * *
14879154 TCCACTGCTGGTCAGGGAGCTCA-GATTTACAATCTTCCGCCTAT
1 TCCACTGCTGTTCAGGGAGCT-AGGACTTACAATCTTCCACCTAT
*
14879198 TCCACTGCTATTCAGGGAGCTAGGACTTA
1 TCCACTGCTGTTCAGGGAGCTAGGACTTA
14879227 TAGTTTCACT
Statistics
Matches: 179, Mismatches: 24, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
43 1 0.01
44 177 0.99
45 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (44 bp):
TCCACTGCTGTTCAGGGAGCTAGGACTTACAATCTTCCACCTAT
Found at i:14879097 original size:88 final size:88
Alignment explanation
Indices: 14878978--14879226 Score: 383
Period size: 88 Copynumber: 2.8 Consensus size: 88
14878968 TTCAACCTGC
* * * * **
14878978 TCCACTGTTGCTCAAGGAGCTAGGACTTACAATCTTCTACCTATTCCACTGCTGTTCAGGGAGCT
1 TCCACTGCTGGTCAGGGAGCTAGGATTTACAATCTTCCGCCTATTCCACTGCTGTTCAGGGAGCT
*
14879043 AGGACTTACAACCTTCCACTTAT
66 AGGACTTACAACCTTCCACCTAT
14879066 TCCACTGCTGGTCAGGGAGCTAGGATTTACAATCTTCCGCCTATTCCACTGCTGTTCAGGGAGCT
1 TCCACTGCTGGTCAGGGAGCTAGGATTTACAATCTTCCGCCTATTCCACTGCTGTTCAGGGAGCT
** *
14879131 AGGACTTACAGTCTTCTACCTAT
66 AGGACTTACAACCTTCCACCTAT
*
14879154 TCCACTGCTGGTCAGGGAGCTCA-GATTTACAATCTTCCGCCTATTCCACTGCTATTCAGGGAGC
1 TCCACTGCTGGTCAGGGAGCT-AGGATTTACAATCTTCCGCCTATTCCACTGCTGTTCAGGGAGC
14879218 TAGGACTTA
65 TAGGACTTA
14879227 TAGTTTCACT
Statistics
Matches: 149, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
88 148 0.99
89 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (88 bp):
TCCACTGCTGGTCAGGGAGCTAGGATTTACAATCTTCCGCCTATTCCACTGCTGTTCAGGGAGCT
AGGACTTACAACCTTCCACCTAT
Found at i:14887247 original size:21 final size:22
Alignment explanation
Indices: 14887208--14887249 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
14887198 GTAGGTGTGG
14887208 CGTACGGATGGTGGACGTGGCA
1 CGTACGGATGGTGGACGTGGCA
14887230 CGTACGGA-GGTGCG-CGTGGC
1 CGTACGGATGGTG-GACGTGGC
14887250 TGGGGAGAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.14, C:0.21, G:0.48, T:0.17
Consensus pattern (22 bp):
CGTACGGATGGTGGACGTGGCA
Found at i:14893442 original size:27 final size:27
Alignment explanation
Indices: 14893412--14893486 Score: 71
Period size: 27 Copynumber: 2.8 Consensus size: 27
14893402 AGAAGGCTTG
*
14893412 GCGAGCTAGTATATGCCAGCAGGTCTA
1 GCGAGCTAGTATATGCCAGCAGGTCCA
* * * *
14893439 GCGAGATGGTATACGCTAGCAGGTCCA
1 GCGAGCTAGTATATGCCAGCAGGTCCA
* *
14893466 ACGAGACGA-TATATGCCAGCA
1 GCGAG-CTAGTATATGCCAGCA
14893487 AGCTTGGCAA
Statistics
Matches: 36, Mismatches: 11, Indels: 2
0.73 0.22 0.04
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.29, C:0.23, G:0.29, T:0.19
Consensus pattern (27 bp):
GCGAGCTAGTATATGCCAGCAGGTCCA
Found at i:14894035 original size:27 final size:27
Alignment explanation
Indices: 14893999--14894078 Score: 117
Period size: 27 Copynumber: 3.0 Consensus size: 27
14893989 AGCAATAAAA
* * *
14893999 ATTCTTACAGAGTACGCCACAAAGGTT
1 ATTCATACAGAGTATGCCACAAAGGTG
14894026 ATAT-ATACAGAGTATGCCACAAAGGTG
1 AT-TCATACAGAGTATGCCACAAAGGTG
14894053 ATTCATACAGAGTATGCCACAAAGGT
1 ATTCATACAGAGTATGCCACAAAGGT
14894079 AGACAAGATG
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
26 1 0.02
27 46 0.96
28 1 0.02
ACGTcount: A:0.38, C:0.19, G:0.20, T:0.24
Consensus pattern (27 bp):
ATTCATACAGAGTATGCCACAAAGGTG
Found at i:14895023 original size:17 final size:17
Alignment explanation
Indices: 14894968--14895024 Score: 53
Period size: 17 Copynumber: 3.1 Consensus size: 17
14894958 ATAAATATTA
14894968 ATAAATGTCTTGCAATC
1 ATAAATGTCTTGCAATC
14894985 ATAATTATCCAG-CTTGGCAATC
1 ATAA--AT---GTCTT-GCAATC
14895007 ATAAATGTCTTGCAATC
1 ATAAATGTCTTGCAATC
14895024 A
1 A
14895025 CAATATTCCA
Statistics
Matches: 33, Mismatches: 0, Indels: 14
0.70 0.00 0.30
Matches are distributed among these distances:
17 12 0.36
18 3 0.09
19 2 0.06
20 2 0.06
21 3 0.09
22 11 0.33
ACGTcount: A:0.35, C:0.19, G:0.12, T:0.33
Consensus pattern (17 bp):
ATAAATGTCTTGCAATC
Found at i:14903347 original size:21 final size:20
Alignment explanation
Indices: 14903319--14903360 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
14903309 GATTCCATAA
14903319 TTATTATTTTATTAAATTTT
1 TTATTATTTTATTAAATTTT
* *
14903339 TTATATATTTTTTTAGATTTT
1 TTAT-TATTTTATTAAATTTT
14903360 T
1 T
14903361 AAAAAATATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.71
Consensus pattern (20 bp):
TTATTATTTTATTAAATTTT
Found at i:14903369 original size:23 final size:23
Alignment explanation
Indices: 14903343--14903387 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
14903333 AATTTTTTAT
* *
14903343 ATATTTTTTTAGATTTTTAAAAA
1 ATATTTATATAGATTTTTAAAAA
*
14903366 ATATTTATATATATTTTTAAAA
1 ATATTTATATAGATTTTTAAAA
14903388 TACAAATTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (23 bp):
ATATTTATATAGATTTTTAAAAA
Found at i:14903400 original size:24 final size:23
Alignment explanation
Indices: 14903355--14903408 Score: 63
Period size: 26 Copynumber: 2.2 Consensus size: 23
14903345 ATTTTTTTAG
*
14903355 ATTTTTAAAAAATATTTATATAT
1 ATTTTTAAAAAAAATTTATATAT
*
14903378 ATTTTTAAAATACAAATTTTATAAAT
1 ATTTTTAAAA-A-AAA-TTTATATAT
14903404 ATTTT
1 ATTTT
14903409 GAATTTTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
23 10 0.38
24 1 0.04
25 2 0.08
26 13 0.50
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (23 bp):
ATTTTTAAAAAAAATTTATATAT
Found at i:14903415 original size:18 final size:19
Alignment explanation
Indices: 14903392--14903453 Score: 65
Period size: 20 Copynumber: 3.3 Consensus size: 19
14903382 TTAAAATACA
*
14903392 AATTTTATAAA-TATTTTG
1 AATTTTAAAAATTATTTTG
*
14903410 AATTTTAAAAATTATTTTCA
1 AATTTTAAAAATTATTTT-G
* *
14903430 AATTTTGAAAATTACTTTG
1 AATTTTAAAAATTATTTTG
14903449 -ATTTT
1 AATTTT
14903454 TTTTTTTGTA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
18 15 0.41
19 6 0.16
20 16 0.43
ACGTcount: A:0.39, C:0.03, G:0.05, T:0.53
Consensus pattern (19 bp):
AATTTTAAAAATTATTTTG
Found at i:14903435 original size:20 final size:20
Alignment explanation
Indices: 14903390--14903443 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
14903380 TTTTAAAATA
*
14903390 CAAATTTTATAAA-TATTTT
1 CAAATTTTAAAAATTATTTT
*
14903409 -GAATTTTAAAAATTATTTT
1 CAAATTTTAAAAATTATTTT
*
14903428 CAAATTTTGAAAATTA
1 CAAATTTTAAAAATTA
14903444 CTTTGATTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
18 10 0.34
19 6 0.21
20 13 0.45
ACGTcount: A:0.44, C:0.04, G:0.04, T:0.48
Consensus pattern (20 bp):
CAAATTTTAAAAATTATTTT
Found at i:14903637 original size:9 final size:9
Alignment explanation
Indices: 14903621--14903650 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
14903611 ATTCGAGTTG
14903621 ACTCGAATA
1 ACTCGAATA
*
14903630 ATTCGAATA
1 ACTCGAATA
14903639 ACTCGAATA
1 ACTCGAATA
14903648 ACT
1 ACT
14903651 TGATTTGATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.43, C:0.20, G:0.10, T:0.27
Consensus pattern (9 bp):
ACTCGAATA
Found at i:14904862 original size:42 final size:42
Alignment explanation
Indices: 14904751--14904923 Score: 179
Period size: 43 Copynumber: 4.1 Consensus size: 42
14904741 TCCCGAGGTG
* * *
14904751 TGATTTCATGTAAGACCATGTCTAGGACATTGGCATCG-ATA
1 TGATTACATATAAGACCATGTCTGGGACATTGGCATCGTATA
*
14904792 TGAGATTACGTATAAGACCATGTCTGGGACATTGGCATCGTATA
1 T--GATTACATATAAGACCATGTCTGGGACATTGGCATCGTATA
* * * * *
14904836 TGATTTCATATAAGACCCTGTTTGGGACAGTGGCATCGATATG
1 TGATTACATATAAGACCATGTCTGGGACATTGGCATCG-TATA
* * * * *
14904879 TGATAACATGTAAGACCATATCTGGGATA-TGGCATTGTATA
1 TGATTACATATAAGACCATGTCTGGGACATTGGCATCGTATA
14904920 TGAT
1 TGAT
14904924 ATATGTGTTT
Statistics
Matches: 109, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
41 8 0.07
42 39 0.36
43 58 0.53
44 4 0.04
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (42 bp):
TGATTACATATAAGACCATGTCTGGGACATTGGCATCGTATA
Found at i:14904864 original size:85 final size:84
Alignment explanation
Indices: 14904751--14904923 Score: 229
Period size: 85 Copynumber: 2.0 Consensus size: 84
14904741 TCCCGAGGTG
* * * * *
14904751 TGATTTCATGTAAGACCATGTCTAGGACATTGGCATCGATATGAGATTACGTATAAGACCATGTC
1 TGATTTCATATAAGACCATGTCTAGGACAGTGGCATCGATATGAGATAACATATAAGACCATATC
14904816 TGGGACATTGGCATCGTATA
66 TGGGACA-TGGCATCGTATA
* * * * *
14904836 TGATTTCATATAAGACCCTGTTTGGGACAGTGGCATCGATATGTGATAACATGTAAGACCATATC
1 TGATTTCATATAAGACCATGTCTAGGACAGTGGCATCGATATGAGATAACATATAAGACCATATC
* *
14904901 TGGGATATGGCATTGTATA
66 TGGGACATGGCATCGTATA
14904920 TGAT
1 TGAT
14904924 ATATGTGTTT
Statistics
Matches: 76, Mismatches: 12, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
84 15 0.20
85 61 0.80
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (84 bp):
TGATTTCATATAAGACCATGTCTAGGACAGTGGCATCGATATGAGATAACATATAAGACCATATC
TGGGACATGGCATCGTATA
Found at i:14907967 original size:99 final size:98
Alignment explanation
Indices: 14907887--14908082 Score: 329
Period size: 99 Copynumber: 2.0 Consensus size: 98
14907877 TTAGAAACTC
* *
14907887 AAAAAAATATTTGGGAAACAACCAATAGTAAATTAGTAAATAATTAGATAAAATATGAATTTTAA
1 AAAAAAATATTTGGAAAACAACCAATAGTAAATTAGTAAAAAATTAGATAAAATATGAATTTTAA
14907952 GAAAATAAATTATAATATTAAATTGAAAAAAAGA
66 GAAAATAAATTATAATA-TAAATTGAAAAAAAGA
*
14907986 AAAAAAATATTTGGAAAACAACCAATAGTAAATTAGTAAAAAATTAGATAAAATATTAATTTTAA
1 AAAAAAATATTTGGAAAACAACCAATAGTAAATTAGTAAAAAATTAGATAAAATATGAATTTTAA
* *
14908051 GAAAGTAGATTATAATATTAAATTGAAAAAAA
66 GAAAATAAATTATAATA-TAAATTGAAAAAAA
14908083 AAGGTAAAGT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
99 92 1.00
ACGTcount: A:0.59, C:0.03, G:0.10, T:0.29
Consensus pattern (98 bp):
AAAAAAATATTTGGAAAACAACCAATAGTAAATTAGTAAAAAATTAGATAAAATATGAATTTTAA
GAAAATAAATTATAATATAAATTGAAAAAAAGA
Found at i:14914356 original size:28 final size:28
Alignment explanation
Indices: 14914294--14914364 Score: 81
Period size: 28 Copynumber: 2.5 Consensus size: 28
14914284 CTAAACCCCT
* * *
14914294 AACCTTAAACCCTAAATTTAAAATCCCG
1 AACCCTAAACCCAAAATTTAAAATCCCA
14914322 AACCCTAAACCCAAAATTTAAAA-CCTCA
1 AACCCTAAACCCAAAATTTAAAATCC-CA
* *
14914350 AATCCTAAACTCAAA
1 AACCCTAAACCCAAA
14914365 TACTAAAAAT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 2 0.05
28 35 0.95
ACGTcount: A:0.48, C:0.30, G:0.01, T:0.21
Consensus pattern (28 bp):
AACCCTAAACCCAAAATTTAAAATCCCA
Found at i:14914550 original size:17 final size:18
Alignment explanation
Indices: 14914528--14914561 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
14914518 TTGTTTATAA
14914528 TTTAAA-AAATTAATTAT
1 TTTAAATAAATTAATTAT
*
14914545 TTTAAATAATTTAATTA
1 TTTAAATAAATTAATTA
14914562 AAGTTAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
TTTAAATAAATTAATTAT
Found at i:14916956 original size:2 final size:2
Alignment explanation
Indices: 14916951--14917081 Score: 262
Period size: 2 Copynumber: 65.5 Consensus size: 2
14916941 AAATTATTTT
14916951 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
14916993 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
14917035 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
14917077 AG AG A
1 AG AG A
14917082 AGAAATTAAC
Statistics
Matches: 129, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 129 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:14917541 original size:42 final size:41
Alignment explanation
Indices: 14917432--14917541 Score: 175
Period size: 41 Copynumber: 2.7 Consensus size: 41
14917422 TTTCGGGACA
*
14917432 TTAGCGGCGTTTTTAGAAAAGCGCCGCTAATGCTCTGGTTT
1 TTAGCGGCGTTTTTAGAAAAGCGCCGCTAATGCTCTGGTCT
* *
14917473 TTAGCGGCGTTTTTGGAGAAGCGCCGCTAATGCTCTGGTCT
1 TTAGCGGCGTTTTTAGAAAAGCGCCGCTAATGCTCTGGTCT
*
14917514 TTAGCAGCGTTTTTTAGAAAAGCGCCGC
1 TTAGCGGCG-TTTTTAGAAAAGCGCCGC
14917542 AAAAACATTT
Statistics
Matches: 62, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
41 46 0.74
42 16 0.26
ACGTcount: A:0.19, C:0.21, G:0.28, T:0.32
Consensus pattern (41 bp):
TTAGCGGCGTTTTTAGAAAAGCGCCGCTAATGCTCTGGTCT
Found at i:14917933 original size:22 final size:22
Alignment explanation
Indices: 14917883--14917978 Score: 67
Period size: 22 Copynumber: 4.5 Consensus size: 22
14917873 ATATGATTTA
14917883 GAGTTTAAGGTTTAAGAGTTACT
1 GAGTTTAAGGTTTAAGAGTTA-T
* *
14917906 -ATTTTAAGGTTTATG-GATTAT
1 GAGTTTAAGGTTTAAGAG-TTAT
* * *
14917927 GAGTTTAGGGGTTATG-GTTTAT
1 GAGTTTAAGGTTTAAGAG-TTAT
* *
14917949 -AGTTTATGGTTTAAGATTTAT
1 GAGTTTAAGGTTTAAGAGTTAT
14917970 G-GTTTAAGG
1 GAGTTTAAGG
14917979 GTTGCGGTTT
Statistics
Matches: 58, Mismatches: 11, Indels: 10
0.73 0.14 0.13
Matches are distributed among these distances:
21 25 0.43
22 33 0.57
ACGTcount: A:0.26, C:0.01, G:0.27, T:0.46
Consensus pattern (22 bp):
GAGTTTAAGGTTTAAGAGTTAT
Found at i:14917953 original size:7 final size:7
Alignment explanation
Indices: 14917908--14917996 Score: 70
Period size: 7 Copynumber: 12.6 Consensus size: 7
14917898 GAGTTACTAT
*
14917908 TTTAAGG
1 TTTATGG
14917915 TTTATGG
1 TTTATGG
*
14917922 ATTATGAG
1 TTTATG-G
*
14917930 TTTAGGG
1 TTTATGG
*
14917937 GTTATGG
1 TTTATGG
*
14917944 TTTATAG
1 TTTATGG
14917951 TTTATGG
1 TTTATGG
* *
14917958 TTTAAGA
1 TTTATGG
14917965 TTTATGG
1 TTTATGG
*
14917972 TTTAAGG
1 TTTATGG
* **
14917979 GTTGCGG
1 TTTATGG
14917986 TTTATGG
1 TTTATGG
14917993 TTTA
1 TTTA
14917997 ATGTTATAGG
Statistics
Matches: 61, Mismatches: 20, Indels: 2
0.73 0.24 0.02
Matches are distributed among these distances:
7 56 0.92
8 5 0.08
ACGTcount: A:0.21, C:0.01, G:0.29, T:0.48
Consensus pattern (7 bp):
TTTATGG
Found at i:14917954 original size:21 final size:21
Alignment explanation
Indices: 14917864--14917997 Score: 74
Period size: 21 Copynumber: 6.3 Consensus size: 21
14917854 AAGGTTTTTG
* *
14917864 GTTT-AGGGTATATGATTTAGA
1 GTTTAAGGGT-TATGGTTTATA
* *
14917885 GTTTAAGGTTTAAGAG-TTACTA
1 GTTTAAGGGTTATG-GTTTA-TA
* * *
14917907 TTTTAAGGTTTATGGATTATGA
1 GTTTAAGGGTTATGGTTTAT-A
*
14917929 GTTTAGGGGTTATGGTTTATA
1 GTTTAAGGGTTATGGTTTATA
* * * * *
14917950 GTTTATGGTTTAAGATTTATG
1 GTTTAAGGGTTATGGTTTATA
** *
14917971 GTTTAAGGGTTGCGGTTTATG
1 GTTTAAGGGTTATGGTTTATA
14917992 GTTTAA
1 GTTTAA
14917998 TGTTATAGGT
Statistics
Matches: 88, Mismatches: 20, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
21 51 0.58
22 37 0.42
ACGTcount: A:0.25, C:0.01, G:0.28, T:0.46
Consensus pattern (21 bp):
GTTTAAGGGTTATGGTTTATA
Found at i:14918035 original size:21 final size:21
Alignment explanation
Indices: 14918011--14918074 Score: 60
Period size: 21 Copynumber: 3.0 Consensus size: 21
14918001 TATAGGTTAA
14918011 GGGTTGAGGTTTAAGGTTTAG
1 GGGTTGAGGTTTAAGGTTTAG
*
14918032 GGGTTGAGAG-TTAATAG-TTAG
1 GGGTTGAG-GTTTAA-GGTTTAG
* *
14918053 GGGTTTAGGATTTAGGGTTTAG
1 GGGTTGAGG-TTTAAGGTTTAG
14918075 ATTAATTAGT
Statistics
Matches: 34, Mismatches: 4, Indels: 9
0.72 0.09 0.19
Matches are distributed among these distances:
20 1 0.03
21 24 0.71
22 9 0.26
ACGTcount: A:0.22, C:0.00, G:0.41, T:0.38
Consensus pattern (21 bp):
GGGTTGAGGTTTAAGGTTTAG
Found at i:14918071 original size:35 final size:36
Alignment explanation
Indices: 14918018--14918085 Score: 88
Period size: 35 Copynumber: 1.9 Consensus size: 36
14918008 TAAGGGTTGA
14918018 GGTTTAAGGTTTAGGGGTTGAGAGTTAA-TAGTTAGG
1 GGTTTAAGGTTTAGGGGTTGAGA-TTAATTAGTTAGG
*
14918054 GGTTT-AGGATTTA-GGGTTTAGATTAATTAGTT
1 GGTTTAAGG-TTTAGGGGTTGAGATTAATTAGTT
14918086 TTTTAAATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
34 4 0.14
35 16 0.55
36 9 0.31
ACGTcount: A:0.25, C:0.00, G:0.34, T:0.41
Consensus pattern (36 bp):
GGTTTAAGGTTTAGGGGTTGAGATTAATTAGTTAGG
Found at i:14918201 original size:16 final size:17
Alignment explanation
Indices: 14918182--14918220 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
14918172 AAATTCTTTA
14918182 TAAATAATTT-ATATAT
1 TAAATAATTTAATATAT
14918198 TAAATAATTTAATATAT
1 TAAATAATTTAATATAT
14918215 TAAATA
1 TAAATA
14918221 TAGTGTTCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 10 0.45
17 12 0.55
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
TAAATAATTTAATATAT
Found at i:14919732 original size:38 final size:38
Alignment explanation
Indices: 14919652--14919733 Score: 103
Period size: 38 Copynumber: 2.2 Consensus size: 38
14919642 GGTTACAAAC
* * * *
14919652 TTTATCTGTTTTTTATACGTTTATCTCACAAATTTTCT
1 TTTATCTGCTTTTTACACGTTTATCTCACAAATGTTCG
*
14919690 TTTATCTGCTTTTTACATGTTTATCTCACAAA-GTTCGG
1 TTTATCTGCTTTTTACACGTTTATCTCACAAATGTTC-G
14919728 TTTATC
1 TTTATC
14919734 AATTGTTTTA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
37 3 0.08
38 35 0.92
ACGTcount: A:0.21, C:0.17, G:0.09, T:0.54
Consensus pattern (38 bp):
TTTATCTGCTTTTTACACGTTTATCTCACAAATGTTCG
Found at i:14923936 original size:43 final size:43
Alignment explanation
Indices: 14923889--14924182 Score: 408
Period size: 43 Copynumber: 6.8 Consensus size: 43
14923879 TTTGTTGTTT
* * * *
14923889 AAGCGTCGCTAAAGGTCGTGGTCTTTAGCGGCGTTTTTGGGAA
1 AAGCGTCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTCGAAA
*
14923932 AAGCGTCGCTAAAGGTCAGGGTCTTTAGCGGCGTTTGTCGAAA
1 AAGCGTCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTCGAAA
* * * * * *
14923975 AAGTGTCACTAAAAGTCATTGTCTTTAGCGGCGTTTGTGGGAA
1 AAGCGTCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTCGAAA
* *
14924018 AAGCGCCACTAAAGGTCATGGTCTTTAGCGGCGTTTGTCGAAA
1 AAGCGTCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTCGAAA
* *
14924061 AAGCGTCGCTAAAAGTCATCGTCTTTAGCGGCGTTTGTCGAAA
1 AAGCGTCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTCGAAA
* * * *
14924104 AAGCGCCGCTAAAGATCATGGTCTTTAGCGGCGTTTGTGGGAA
1 AAGCGTCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTCGAAA
*
14924147 AAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTT
1 AAGCGTCGCTAAAGGTCATGGTCTTTAGCGGCGTTT
14924183 TTTGCGACGC
Statistics
Matches: 222, Mismatches: 29, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 222 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (43 bp):
AAGCGTCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTCGAAA
Found at i:14928310 original size:51 final size:51
Alignment explanation
Indices: 14928243--14928435 Score: 214
Period size: 51 Copynumber: 3.8 Consensus size: 51
14928233 TAATGATGTT
* * * *
14928243 CGGTTCACATAGTAGCCTGCACATAGTACTATACATGTGACAATTACCATC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACAATTACCATC
* * *
14928294 CGATACACGTAGTAGCCTGCACGTAGTACTACACACGTGATCGAA--ACTATC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGA-C-AATTACCATC
* * * * * *
14928345 TGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGAC--TTATCATTC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACAATTACCA-TC
14928395 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGAC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGAC
14928436 CATCACTTTC
Statistics
Matches: 116, Mismatches: 21, Indels: 11
0.78 0.14 0.07
Matches are distributed among these distances:
49 2 0.02
50 39 0.34
51 72 0.62
52 1 0.01
53 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (51 bp):
CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACAATTACCATC
Found at i:14928427 original size:101 final size:101
Alignment explanation
Indices: 14928250--14928434 Score: 300
Period size: 101 Copynumber: 1.8 Consensus size: 101
14928240 GTTCGGTTCA
* *
14928250 CATAGTAGCCTGCACATAGTACTATACATGTGACAATTACCATCCGATACACGTAGTAGCCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGCGAC-ATTACCATCCGATACACGTAGTAGCCTGCA
*
14928315 CGTAGTACTACACACGTGATCGAAACTATCTGGTACG
65 CATAGTACTACACACGTGATCGAAACTATCTGGTACG
* *
14928352 CATAGTAGCCTGCACATAGTACTACACATGCGAC-TTATCATTCCGGTACACGTAGTAGCCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACATTACCA-TCCGATACACGTAGTAGCCTGCA
14928416 CATAGTACTACACACGTGA
65 CATAGTACTACACACGTGA
14928435 CCATCACTTT
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
100 5 0.06
101 40 0.52
102 32 0.42
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.24
Consensus pattern (101 bp):
CATAGTAGCCTGCACATAGTACTACACATGCGACATTACCATCCGATACACGTAGTAGCCTGCAC
ATAGTACTACACACGTGATCGAAACTATCTGGTACG
Found at i:14934514 original size:39 final size:39
Alignment explanation
Indices: 14934448--14934552 Score: 140
Period size: 39 Copynumber: 2.7 Consensus size: 39
14934438 GTATCGAGCC
* * *
14934448 TTGAGCCTAACAAGCCTCATG-CTGGTGACTGATCAGGCT
1 TTGAGCCTAACAGGCTTCGTGTC-GGTGACTGATCAGGCT
* *
14934487 TTGAGCCTAGCAGGCTTCGTGTCGGTGACTTATCAGGCT
1 TTGAGCCTAACAGGCTTCGTGTCGGTGACTGATCAGGCT
*
14934526 TTGAGCCTAATAGGCTTCGTGTCGGTG
1 TTGAGCCTAACAGGCTTCGTGTCGGTG
14934553 TTTATCGAGA
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
39 57 0.98
40 1 0.02
ACGTcount: A:0.18, C:0.23, G:0.30, T:0.30
Consensus pattern (39 bp):
TTGAGCCTAACAGGCTTCGTGTCGGTGACTGATCAGGCT
Found at i:14940625 original size:34 final size:35
Alignment explanation
Indices: 14940572--14940638 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
14940562 CAAACACCAG
*
14940572 AAAATATTTTATAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTATAGTAAATCATTTTACAGAAAAGT
* *
14940607 AAAACATTTTCTAG-AAATCATTTTACGGAAAA
1 AAAACATTTTATAGTAAATCATTTTACAGAAAA
14940639 CATTTTACTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.48, C:0.09, G:0.09, T:0.34
Consensus pattern (35 bp):
AAAACATTTTATAGTAAATCATTTTACAGAAAAGT
Found at i:14949170 original size:15 final size:16
Alignment explanation
Indices: 14949133--14949178 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
14949123 ATAATAGTTT
14949133 ATATTATATTATAAAA
1 ATATTATATTATAAAA
*
14949149 ATATTATTTTAT-AAA
1 ATATTATATTATAAAA
* *
14949164 ATTTTATATAATAAA
1 ATATTATATTATAAA
14949179 TATAAAGTCA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
ATATTATATTATAAAA
Found at i:14953705 original size:42 final size:42
Alignment explanation
Indices: 14953645--14953793 Score: 156
Period size: 42 Copynumber: 3.5 Consensus size: 42
14953635 CCAAAGGCTG
** * * *
14953645 AACAGAAGCTCATGAGAGCTAAATAGAAACCCATAAGGGTTG
1 AACAGAAGCTTGTAAGAGCTAAACAGAAACCCATAAGGGTTA
*
14953687 AACGGAAGCTTGTAAGAGCTAAACAGAAACCCATAAGGGTTA
1 AACAGAAGCTTGTAAGAGCTAAACAGAAACCCATAAGGGTTA
** * * * *
14953729 AACAGAAGC-TCAATAGAGCTGAACAGAAACTCATATGAGTTA
1 AACAGAAGCTTGTA-AGAGCTAAACAGAAACCCATAAGGGTTA
* *
14953771 AACAGAAGCTCGTGAGAGCTAAA
1 AACAGAAGCTTGTAAGAGCTAAA
14953794 TGGAAAGTAA
Statistics
Matches: 87, Mismatches: 18, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
41 2 0.02
42 85 0.98
ACGTcount: A:0.44, C:0.17, G:0.23, T:0.17
Consensus pattern (42 bp):
AACAGAAGCTTGTAAGAGCTAAACAGAAACCCATAAGGGTTA
Found at i:14953793 original size:21 final size:21
Alignment explanation
Indices: 14953645--14953793 Score: 102
Period size: 21 Copynumber: 7.1 Consensus size: 21
14953635 CCAAAGGCTG
*
14953645 AACAGAAGCTCATGAGAGCTA
1 AACAGAAGCTCATAAGAGCTA
* * * * * *
14953666 AATAGAAACCCATAAGGGTTG
1 AACAGAAGCTCATAAGAGCTA
* **
14953687 AACGGAAGCTTGTAAGAGCTA
1 AACAGAAGCTCATAAGAGCTA
* * * *
14953708 AACAGAAACCCATAAGGGTTA
1 AACAGAAGCTCATAAGAGCTA
*
14953729 AACAGAAGCTCA-ATAGAGCTG
1 AACAGAAGCTCATA-AGAGCTA
* * *
14953750 AACAGAAACTCATATGAGTTA
1 AACAGAAGCTCATAAGAGCTA
* *
14953771 AACAGAAGCTCGTGAGAGCTA
1 AACAGAAGCTCATAAGAGCTA
14953792 AA
1 AA
14953794 TGGAAAGTAA
Statistics
Matches: 89, Mismatches: 37, Indels: 4
0.68 0.28 0.03
Matches are distributed among these distances:
20 1 0.01
21 87 0.98
22 1 0.01
ACGTcount: A:0.44, C:0.17, G:0.23, T:0.17
Consensus pattern (21 bp):
AACAGAAGCTCATAAGAGCTA
Found at i:14959511 original size:21 final size:21
Alignment explanation
Indices: 14959473--14959513 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
14959463 TATTTTTAAT
14959473 AAATATATTATTTGAAATTTG
1 AAATATATTATTTGAAATTTG
*
14959494 AAAT-TATTATTGTTAAATTT
1 AAATATATTATT-TGAAATTT
14959514 TATTATTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.51
Consensus pattern (21 bp):
AAATATATTATTTGAAATTTG
Found at i:14959577 original size:29 final size:29
Alignment explanation
Indices: 14959515--14959579 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 29
14959505 GTTAAATTTT
*
14959515 ATTATTAAAATAAAATTGTAGTATTAAAA
1 ATTATTAAAATAAAAATGTAGTATTAAAA
14959544 ATTATTAAAATAATAAAT-TA-TATTAATAA
1 ATTATTAAAATAA-AAATGTAGTATTAA-AA
*
14959573 TTTATTA
1 ATTATTA
14959580 TATTATTAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
28 6 0.19
29 23 0.72
30 3 0.09
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (29 bp):
ATTATTAAAATAAAAATGTAGTATTAAAA
Found at i:14960899 original size:7 final size:7
Alignment explanation
Indices: 14960887--14960913 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
14960877 CTAGAGCAGT
14960887 GTAAAGA
1 GTAAAGA
14960894 GTAAAGA
1 GTAAAGA
14960901 GTAAAGA
1 GTAAAGA
14960908 GTAAAG
1 GTAAAG
14960914 GAGTGTTGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.56, C:0.00, G:0.30, T:0.15
Consensus pattern (7 bp):
GTAAAGA
Found at i:14966525 original size:3 final size:3
Alignment explanation
Indices: 14966506--14966544 Score: 51
Period size: 3 Copynumber: 12.7 Consensus size: 3
14966496 GCGCATGAAT
* *
14966506 ATA AAA ATA AAA ATA ATA ATAA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA AT
14966545 GATACAAGAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
3 28 0.90
4 3 0.10
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (3 bp):
ATA
Found at i:14966531 original size:16 final size:16
Alignment explanation
Indices: 14966506--14966543 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
14966496 GCGCATGAAT
14966506 ATAA-AAATAAAAATA
1 ATAATAAATAAAAATA
*
14966521 ATAATAAATAATAATA
1 ATAATAAATAAAAATA
14966537 ATAATAA
1 ATAATAA
14966544 TGATACAAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 4 0.19
16 17 0.81
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (16 bp):
ATAATAAATAAAAATA
Found at i:14967052 original size:19 final size:19
Alignment explanation
Indices: 14967020--14967073 Score: 81
Period size: 19 Copynumber: 2.8 Consensus size: 19
14967010 AATCATATCT
*
14967020 TCTAAGATTGCATATCATA
1 TCTAAGATTACATATCATA
*
14967039 TCTAATATTACATATCATA
1 TCTAAGATTACATATCATA
*
14967058 TCTAAGATTGCATATC
1 TCTAAGATTACATATC
14967074 CTTGAAGATT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.37, C:0.17, G:0.07, T:0.39
Consensus pattern (19 bp):
TCTAAGATTACATATCATA
Found at i:14967069 original size:38 final size:40
Alignment explanation
Indices: 14966997--14967073 Score: 113
Period size: 38 Copynumber: 1.9 Consensus size: 40
14966987 AAATTAAATC
14966997 TCTAATATTACAAAATCATATCTTCTAAGATTGCATATCATA
1 TCTAATATTACAAAATCATA--TTCTAAGATTGCATATCATA
*
14967039 TCTAATATTAC-ATATCATA-TCTAAGATTGCATATC
1 TCTAATATTACAAAATCATATTCTAAGATTGCATATC
14967074 CTTGAAGATT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
38 16 0.47
41 7 0.21
42 11 0.32
ACGTcount: A:0.39, C:0.17, G:0.05, T:0.39
Consensus pattern (40 bp):
TCTAATATTACAAAATCATATTCTAAGATTGCATATCATA
Found at i:14967639 original size:45 final size:45
Alignment explanation
Indices: 14967582--14967924 Score: 228
Period size: 45 Copynumber: 7.8 Consensus size: 45
14967572 TTGTTCATTT
* * * * *
14967582 AGTCTGCCCCACTGCAGTTTCAGGGGGATAAGACTTGATTTCTTG
1 AGTCTGCTCCACTGCAATTTCAGGGAGATAAGACTCGCTTTCTTG
14967627 AGTCTGCTCCACTGCAATTTCAGGGAGATAAGACTCGCTTTCTTG
1 AGTCTGCTCCACTGCAATTTCAGGGAGATAAGACTCGCTTTCTTG
* * *
14967672 GGTCTGCTCCACTGTAACTTCAGGGAGATAAGACTCGCTTTCTTG
1 AGTCTGCTCCACTGCAATTTCAGGGAGATAAGACTCGCTTTCTTG
* * * * * * *
14967717 GGTCTGTTCCACTGTAACTTCAAGGAGATAAGAC-C-CAATGC--G
1 AGTCTGCTCCACTGCAATTTCAGGGAGATAAGACTCGC-TTTCTTG
* * * *
14967759 A-TCTG-TTCTCTGCAACTTCAGAGAGATAAGA-TCTG-TGATT-TT-
1 AGTCTGCTCCACTGCAATTTCAGGGAGATAAGACTC-GCT--TTCTTG
* ** * * ** *
14967801 AATCCACTCCACTGCAACTTCAGGGAGATAAGATTCGCCATCTTT
1 AGTCTGCTCCACTGCAATTTCAGGGAGATAAGACTCGCTTTCTTG
* * * * *
14967846 AGTCTGC-CTCACTACAACTTCA-GGAGGATAAGGCTTGCTTACTT-
1 AGTCTGCTC-CACTGCAATTTCAGGGA-GATAAGACTCGCTTTCTTG
*
14967890 AGTCTGCTCCATTGCAACTTT-AGGGAGATAAGACT
1 AGTCTGCTCCACTGCAA-TTTCAGGGAGATAAGACT
14967925 AGATGCGATC
Statistics
Matches: 238, Mismatches: 41, Indels: 39
0.75 0.13 0.12
Matches are distributed among these distances:
40 22 0.09
41 4 0.02
42 3 0.01
43 4 0.02
44 55 0.23
45 150 0.63
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (45 bp):
AGTCTGCTCCACTGCAATTTCAGGGAGATAAGACTCGCTTTCTTG
Found at i:14967696 original size:90 final size:87
Alignment explanation
Indices: 14967583--14968003 Score: 267
Period size: 84 Copynumber: 4.8 Consensus size: 87
14967573 TGTTCATTTA
* ** * *
14967583 GTCTGCCCCACTGCAGTTTCAGGGGGATAAGACTTGATTTCTTGAGTCTGCTCCACTGCAATTTC
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGATTTCTT-AGTCTGCTCCACTGCAACTTC
14967648 AGGGAGATAAGACTCGCTTTCTTGG
65 AGGGAGATAAGACTCGC--TCTTGG
* * * * * *
14967673 GTCTGCTCCACTGTAACTTCAGGGAGATAAGACTCGCTTTCTTGGGTCTGTTCCACTGTAACTTC
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGATTTCTT-AGTCTGCTCCACTGCAACTTC
* **
14967738 AAGGAGATAAGAC-C-C-AATGCG
65 AGGGAGATAAGACTCGCTCTTG-G
* * * * * **
14967759 ATCTG-TTCTCTGCAACTTCAGAGAGATAAGATCTGTGA-TT-TTAATCCACTCCACTGCAACTT
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGA-CT-TGATTTCTTAGTCTGCTCCACTGCAACTT
* **
14967821 CAGGGAGATAAGATTCGCCATCTTTA
64 CAGGGAGATAAGACTCG-C-TCTTGG
* * * * *
14967847 GTCTGC-CTCACTACAACTTCA-GGAGGATAAGGCTTGCTTACTTAGTCTGCTCCATTGCAACTT
1 GTCTGCTC-CACTGCAACTTCAGGGA-GATAAGACTTGATTTCTTAGTCTGCTCCACTGCAACTT
* * *
14967910 TAGGGAGATAAGACTAG---ATGCG
64 CAGGGAGATAAGACTCGCTCTTG-G
* * * * * * *
14967932 ATCTGCT-CTCTGCAACTTCAGAGAGATAAGATCTGTG-CTT-TTAATTTGCTCCACTGCGACTT
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGA-CT-TGATTTCTTAGTCTGCTCCACTGCAACTT
14967994 CAGGGAGATA
64 CAGGGAGATA
14968004 GGATTATTGG
Statistics
Matches: 250, Mismatches: 63, Indels: 42
0.70 0.18 0.12
Matches are distributed among these distances:
84 71 0.28
85 37 0.15
86 11 0.04
87 4 0.02
88 10 0.04
89 51 0.20
90 66 0.26
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (87 bp):
GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGATTTCTTAGTCTGCTCCACTGCAACTTCA
GGGAGATAAGACTCGCTCTTGG
Found at i:14967828 original size:84 final size:84
Alignment explanation
Indices: 14967719--14968003 Score: 276
Period size: 84 Copynumber: 3.3 Consensus size: 84
14967709 CTTTCTTGGG
* * * *
14967719 TCTGTTCCACTGTAACTTCAAGGAGATAAGACCCAATGCGATCTGTTCTCTGCAACTTCAGAGAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACCCAATGCGATCTGCTCTCTGCAACTTCAGAGAG
*
14967784 ATAAGATCTGTGATTTTAA
66 ATAAGATCTGTGCTTTTAA
** * * *
14967803 TCCACTCCACTGCAACTTCAGGGAGATAAGATTCGCC-AT-CTTTAGTCTGCCTCACTACAACTT
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGA--C-CCAATGC--GA-TCTG-CTCTCTGCAACTT
* *
14967866 CAG-GAGGATAAG-GCT-TGCTTACTTAG
59 CAGAGA-GATAAGATCTGTGCTT--TTAA
* * *
14967892 TCTGCTCCATTGCAACTTTAGGGAGATAAGA-CTAGATGCGATCTGCTCTCTGCAACTTCAGAGA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACCCA-ATGCGATCTGCTCTCTGCAACTTCAGAGA
14967956 GATAAGATCTGTGCTTTTAA
65 GATAAGATCTGTGCTTTTAA
* *
14967976 TTTGCTCCACTGCGACTTCAGGGAGATA
1 TCTGCTCCACTGCAACTTCAGGGAGATA
14968004 GGATTATTGG
Statistics
Matches: 159, Mismatches: 26, Indels: 32
0.73 0.12 0.15
Matches are distributed among these distances:
84 73 0.46
85 10 0.06
86 9 0.06
87 9 0.06
88 9 0.06
89 49 0.31
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (84 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGACCCAATGCGATCTGCTCTCTGCAACTTCAGAGAG
ATAAGATCTGTGCTTTTAA
Found at i:14967951 original size:173 final size:174
Alignment explanation
Indices: 14967633--14968008 Score: 472
Period size: 173 Copynumber: 2.2 Consensus size: 174
14967623 CTTGAGTCTG
* * ** * **
14967633 CTCCACTGCAATTTCAGGGAGATAAGACTCGCTTTCTTGGGTCTGCTCCACTGTAACTTCAGGGA
1 CTCCACTGCAACTTCAGGGAGATAAGATTCGCCATCTTGAGTCTGCTCCACTACAACTTCAGGGA
* * * *
14967698 GATAAGACTCGCTTTCTTGGGTCTGTTCCACTGTAACTTCAAGGAGATAAGACCCAATGCGATCT
66 GATAAGACTCGCTTACTTGAGTCTGCTCCACTGCAACTTCAAGGAGATAAGACCCAATGCGATCT
*
14967763 GTTCTCTGCAACTTCAGAGAGATAAGATCTGTGATTTTAATCCA
131 GCTCTCTGCAACTTCAGAGAGATAAGATCTGTGATTTTAATCCA
*
14967807 CTCCACTGCAACTTCAGGGAGATAAGATTCGCCATCTTTAGTCTGC-CTCACTACAACTTCA-GG
1 CTCCACTGCAACTTCAGGGAGATAAGATTCGCCATCTTGAGTCTGCTC-CACTACAACTTCAGGG
* * * * * *
14967870 AGGATAAGGCTTGCTTACTT-AGTCTGCTCCATTGCAACTTTAGGGAGATAAGA-CTAGATGCGA
65 A-GATAAGACTCGCTTACTTGAGTCTGCTCCACTGCAACTTCAAGGAGATAAGACCCA-ATGCGA
* ***
14967933 TCTGCTCTCTGCAACTTCAGAGAGATAAGATCTGTGCTTTTAATTTG
128 TCTGCTCTCTGCAACTTCAGAGAGATAAGATCTGTGATTTTAATCCA
* *
14967980 CTCCACTGCGACTTCAGGGAGATAGGATT
1 CTCCACTGCAACTTCAGGGAGATAAGATT
14968009 ATTGGCTTTA
Statistics
Matches: 174, Mismatches: 25, Indels: 7
0.84 0.12 0.03
Matches are distributed among these distances:
172 2 0.01
173 106 0.61
174 66 0.38
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.30
Consensus pattern (174 bp):
CTCCACTGCAACTTCAGGGAGATAAGATTCGCCATCTTGAGTCTGCTCCACTACAACTTCAGGGA
GATAAGACTCGCTTACTTGAGTCTGCTCCACTGCAACTTCAAGGAGATAAGACCCAATGCGATCT
GCTCTCTGCAACTTCAGAGAGATAAGATCTGTGATTTTAATCCA
Found at i:14968002 original size:44 final size:44
Alignment explanation
Indices: 14967768--14968048 Score: 163
Period size: 44 Copynumber: 6.5 Consensus size: 44
14967758 GATCTGTTCT
* ** **
14967768 CTGCAACTTCAGAGAGATAAGATCT-GTGATTTTAATCCACTCCA
1 CTGCAACTTCAGGGAGATAAGAT-TAGTGGCTTTAATCTGCTCCA
* *** *
14967812 CTGCAACTTCAGGGAGATAAGATTCGCCATCTTTAGTCTGC-CTCA
1 CTGCAACTTCAGGGAGATAAGATTAG-TGGCTTTAATCTGCTC-CA
* * ** *
14967857 CTACAACTTCA-GGAGGATAAGGCTT-GCTTAC-TTAGTCTGCTCCA
1 CTGCAACTTCAGGGA-GATAA-GATTAG-TGGCTTTAATCTGCTCCA
* * * * *
14967901 TTGCAACTTTAGGGAGATAAGACTAGAT-GC---GATCTGCT-CT
1 CTGCAACTTCAGGGAGATAAGATTAG-TGGCTTTAATCTGCTCCA
* *
14967941 CTGCAACTTCAGAGAGATAAGATCT-GT-GCTTTTAATTTGCTCCA
1 CTGCAACTTCAGGGAGATAAGAT-TAGTGGC-TTTAATCTGCTCCA
* * *
14967985 CTGCGACTTCAGGGAGATAGGATTATTGGCTTTAATCTGCTCCA
1 CTGCAACTTCAGGGAGATAAGATTAGTGGCTTTAATCTGCTCCA
*
14968029 CTGCAACTTTAGGGAGATAA
1 CTGCAACTTCAGGGAGATAA
14968049 AATTCGCCAT
Statistics
Matches: 183, Mismatches: 38, Indels: 32
0.72 0.15 0.13
Matches are distributed among these distances:
39 3 0.02
40 21 0.11
41 7 0.04
43 11 0.06
44 105 0.57
45 33 0.18
46 3 0.02
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (44 bp):
CTGCAACTTCAGGGAGATAAGATTAGTGGCTTTAATCTGCTCCA
Found at i:14968466 original size:44 final size:44
Alignment explanation
Indices: 14968416--14968537 Score: 151
Period size: 44 Copynumber: 2.8 Consensus size: 44
14968406 ATCTGTTATT
* *
14968416 TTCAACCTACTCCACTGTTGCTCAGGGAGATAGGA-TTCACAATC
1 TTCAACCTATTCCACTGCTGCTCAGGGAGATAGGACTT-ACAATC
* * *
14968460 TTCAACCTATTCCATTGCTGAC-CATGGAGATATGACTTACAATC
1 TTCAACCTATTCCACTGCTG-CTCAGGGAGATAGGACTTACAATC
14968504 TTCAACCTATTCCACTGCTG-TCCAGGGAGATAGG
1 TTCAACCTATTCCACTGCTGCT-CAGGGAGATAGG
14968538 GCTGGGGTCA
Statistics
Matches: 66, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
44 63 0.95
45 3 0.05
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (44 bp):
TTCAACCTATTCCACTGCTGCTCAGGGAGATAGGACTTACAATC
Found at i:14968599 original size:88 final size:88
Alignment explanation
Indices: 14968537--14969114 Score: 814
Period size: 88 Copynumber: 6.6 Consensus size: 88
14968527 AGGGAGATAG
* * * ** *
14968537 GGCTGGGGTCATCGATCTGCTTTGCTGTCGGTGCAGGAAGATAAGATCTGCTATTTTTAACCTGC
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTAC
14968602 TCCGCTGCAACCCAGGGAGGCAA
66 TCCGCTGCAACCCAGGGAGGCAA
* * * *
14968625 GACTGGTGTCTTCAATCTGCTTCACTATCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTAC
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTAC
* *
14968690 TCCGCTACAACCCAGAGAGGCAA
66 TCCGCTGCAACCCAGGGAGGCAA
* ** *
14968713 GGTTGGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTAC
* * *
14968778 TTCGCTACAACCCAGAGAGGCAA
66 TCCGCTGCAACCCAGGGAGGCAA
* * * *
14968801 GGCTGGTGTCTTCGATCTGCTTCGTTGTTGGTGCAGGAAGGCAAGATCTGCAATTTTTAACCTGC
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTAC
* *
14968866 TCTGCTGCAACCCAGGGAGGGAA
66 TCCGCTGCAACCCAGGGAGGCAA
*
14968889 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTAC
*
14968954 TCCGTTGCAACCCAGGGAGGCAA
66 TCCGCTGCAACCCAGGGAGGCAA
* * * * * *
14968977 GGCTAGTGTCTTCGATCTGCTTCGCTGTCAGTCCAAGAAGGCAAGATCTACTATTTTTAACCTGC
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTAC
* *
14969042 TCCGCTACAACCCAGGGAAGCAA
66 TCCGCTGCAACCCAGGGAGGCAA
** *
14969065 GATTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAAGCAAGATCTG
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTG
14969115 TTATCTTCAC
Statistics
Matches: 436, Mismatches: 54, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
88 436 1.00
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.27
Consensus pattern (88 bp):
GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTAC
TCCGCTGCAACCCAGGGAGGCAA
Found at i:14968711 original size:44 final size:43
Alignment explanation
Indices: 14968579--14968801 Score: 153
Period size: 44 Copynumber: 5.1 Consensus size: 43
14968569 GCAGGAAGAT
* *
14968579 AAGATCTGCTATTTTTAACCTGCTCCGCTGCAACCCAGGGAGGC
1 AAGATCTGCTATTTTTAACCTGCTTCGCTACAACCCA-GGAGGC
* * * * * * ****
14968623 AAGA-CTGGTGTCTTCAATCTGCTTCACTATCGGTGCAGGAAGGC
1 AAGATCTGCTATTTTTAACCTGCTTCGCTA-CAACCCAGG-AGGC
* *
14968667 AAGATCTGCTATTTTTAACCTACTCCGCTACAACCCAGAGAGGC
1 AAGATCTGCTATTTTTAACCTGCTTCGCTACAACCCAG-GAGGC
* * * * ** * * **
14968711 AAGGT-TGGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGC
1 AAGATCTGCTATTTTTAACCTGCTTCGCT-ACAACCCAGG-AGGC
14968755 AAGATCTGCTATTTTTAACCTGCTTCGCTACAACCCAGAGAGGC
1 AAGATCTGCTATTTTTAACCTGCTTCGCTACAACCCAG-GAGGC
14968799 AAG
1 AAG
14968802 GCTGGTGTCT
Statistics
Matches: 125, Mismatches: 46, Indels: 16
0.67 0.25 0.09
Matches are distributed among these distances:
43 35 0.28
44 54 0.43
45 36 0.29
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (43 bp):
AAGATCTGCTATTTTTAACCTGCTTCGCTACAACCCAGGAGGC
Found at i:14970462 original size:14 final size:15
Alignment explanation
Indices: 14970439--14970471 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
14970429 ATCGACGCTT
14970439 TTCCAAATAAGG-CC
1 TTCCAAATAAGGCCC
*
14970453 TTCCACATAAGGCCC
1 TTCCAAATAAGGCCC
14970468 TTCC
1 TTCC
14970472 CAGCTTGGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.27, C:0.36, G:0.12, T:0.24
Consensus pattern (15 bp):
TTCCAAATAAGGCCC
Found at i:14971345 original size:25 final size:26
Alignment explanation
Indices: 14971294--14971354 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
14971284 AAGAAAATCC
* **
14971294 AAAAGAATGAAAGAATAATTATTTCA
1 AAAAGAATGAAAAAATAATTAGCTCA
*
14971320 AAAAGAATGAAAAAAT-ATTGGCTCA
1 AAAAGAATGAAAAAATAATTAGCTCA
14971345 AAAATGAATG
1 AAAA-GAATG
14971355 GAAAGATGTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
25 10 0.33
26 20 0.67
ACGTcount: A:0.57, C:0.05, G:0.15, T:0.23
Consensus pattern (26 bp):
AAAAGAATGAAAAAATAATTAGCTCA
Found at i:14975528 original size:65 final size:65
Alignment explanation
Indices: 14975452--14975586 Score: 270
Period size: 65 Copynumber: 2.1 Consensus size: 65
14975442 ACAAAAGTAA
14975452 AAAAAATTGAAACTAAATATAAAAGTATATATATGTATATAAAAGTTAGGAAGTAAAATAAAAAT
1 AAAAAATTGAAACTAAATATAAAAGTATATATATGTATATAAAAGTTAGGAAGTAAAATAAAAAT
14975517 AAAAAATTGAAACTAAATATAAAAGTATATATATGTATATAAAAGTTAGGAAGTAAAATAAAAAT
1 AAAAAATTGAAACTAAATATAAAAGTATATATATGTATATAAAAGTTAGGAAGTAAAATAAAAAT
14975582 AAAAA
1 AAAAA
14975587 CATATGTATA
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 70 1.00
ACGTcount: A:0.61, C:0.01, G:0.10, T:0.27
Consensus pattern (65 bp):
AAAAAATTGAAACTAAATATAAAAGTATATATATGTATATAAAAGTTAGGAAGTAAAATAAAAAT
Found at i:14975695 original size:10 final size:10
Alignment explanation
Indices: 14975670--14975701 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
14975660 GTGCATGAAT
14975670 ATAAA-AATA
1 ATAAATAATA
14975679 A-AAATAATA
1 ATAAATAATA
14975688 ATAAATAATA
1 ATAAATAATA
14975698 ATAA
1 ATAA
14975702 TGATACAAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 3 0.14
9 6 0.29
10 12 0.57
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (10 bp):
ATAAATAATA
Found at i:14976213 original size:19 final size:19
Alignment explanation
Indices: 14976181--14976234 Score: 81
Period size: 19 Copynumber: 2.8 Consensus size: 19
14976171 AATCATATCT
*
14976181 TCTAAGATTGCATATCATA
1 TCTAAGATTACATATCATA
*
14976200 TCTAATATTACATATCATA
1 TCTAAGATTACATATCATA
*
14976219 TCTAAGATTGCATATC
1 TCTAAGATTACATATC
14976235 CTTGAAGATT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.37, C:0.17, G:0.07, T:0.39
Consensus pattern (19 bp):
TCTAAGATTACATATCATA
Found at i:14976230 original size:38 final size:40
Alignment explanation
Indices: 14976158--14976234 Score: 113
Period size: 38 Copynumber: 1.9 Consensus size: 40
14976148 AAATTAAATC
14976158 TCTAATATTACAAAATCATATCTTCTAAGATTGCATATCATA
1 TCTAATATTACAAAATCATA--TTCTAAGATTGCATATCATA
*
14976200 TCTAATATTAC-ATATCATA-TCTAAGATTGCATATC
1 TCTAATATTACAAAATCATATTCTAAGATTGCATATC
14976235 CTTGAAGATT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
38 16 0.47
41 7 0.21
42 11 0.32
ACGTcount: A:0.39, C:0.17, G:0.05, T:0.39
Consensus pattern (40 bp):
TCTAATATTACAAAATCATATTCTAAGATTGCATATCATA
Found at i:14980659 original size:16 final size:15
Alignment explanation
Indices: 14980638--14980667 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
14980628 GGAAAATAAG
14980638 AATATAACAGTAACAT
1 AATATAACA-TAACAT
14980654 AATATAACATAACA
1 AATATAACATAACA
14980668 CTGAACTATC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.60, C:0.13, G:0.03, T:0.23
Consensus pattern (15 bp):
AATATAACATAACAT
Found at i:14981396 original size:23 final size:23
Alignment explanation
Indices: 14981366--14981411 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
14981356 AACACTTAAA
14981366 ACATGAACAGAACTTTTATTATT
1 ACATGAACAGAACTTTTATTATT
14981389 ACATGAACAGAACTTTTATTATT
1 ACATGAACAGAACTTTTATTATT
14981412 TTAACTAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.39, C:0.13, G:0.09, T:0.39
Consensus pattern (23 bp):
ACATGAACAGAACTTTTATTATT
Found at i:14992183 original size:30 final size:30
Alignment explanation
Indices: 14992147--14992215 Score: 111
Period size: 30 Copynumber: 2.3 Consensus size: 30
14992137 ATTTTGGCAA
* *
14992147 AAAACTCTTAAATTTCTCCCTAAATTTTTC
1 AAAACTCTCAAATTTCTCCCTAAATTTCTC
*
14992177 AAAACTCTCAAATTTCTCCTTAAATTTCTC
1 AAAACTCTCAAATTTCTCCCTAAATTTCTC
14992207 AAAACTCTC
1 AAAACTCTC
14992216 TTTAATTAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.35, C:0.26, G:0.00, T:0.39
Consensus pattern (30 bp):
AAAACTCTCAAATTTCTCCCTAAATTTCTC
Found at i:14997407 original size:125 final size:122
Alignment explanation
Indices: 14997188--14997453 Score: 340
Period size: 125 Copynumber: 2.2 Consensus size: 122
14997178 TACTTTATAG
* * * *
14997188 AAGAACTACTGTAGAAAAAGAGCGTCGACGTGGGTTTTTTCATCAATTTTGCTGAAGTGCATCCT
1 AAGAACTACTGTAGAAAAAGAGCATCCACATGGGTTTTTTCATCAATTTTGCTAAAGTGCATCCT
* * * * *
14997253 GCTTGAAAGGTTTTTGATACTCTTTGTTCAGAAAC-GTTTTCTCAAAATTATTTTTTC
66 GCTTGAAAGGTTTTTCACACTATTTGTTCA-AAACTGTATTCACAAAATTATTTTTTC
*
14997310 AAGAACTACTATAGAAAAAGAGCATCCACATGGGAGTTTTTTCAGT-AATTTTGCTAACAGTGCA
1 AAGAACTACTGTAGAAAAAGAGCATCCACAT-GG-GTTTTTTCA-TCAATTTTGCTAA-AGTGCA
*
14997374 TCCTGCTTG-AAGTGTTTTTCACACTATTTGTTCAAAACTGTATTCACAAAATTATTTTTTT
62 TCCTGCTTGAAAG-GTTTTTCACACTATTTGTTCAAAACTGTATTCACAAAATTATTTTTTC
* *
14997435 AGGAATTACTGTAGAAAAA
1 AAGAACTACTGTAGAAAAA
14997454 AACAAAATTC
Statistics
Matches: 124, Mismatches: 14, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
122 27 0.22
123 2 0.02
124 26 0.21
125 69 0.56
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.37
Consensus pattern (122 bp):
AAGAACTACTGTAGAAAAAGAGCATCCACATGGGTTTTTTCATCAATTTTGCTAAAGTGCATCCT
GCTTGAAAGGTTTTTCACACTATTTGTTCAAAACTGTATTCACAAAATTATTTTTTC
Found at i:14997582 original size:67 final size:69
Alignment explanation
Indices: 14997510--14997643 Score: 191
Period size: 67 Copynumber: 2.0 Consensus size: 69
14997500 AAACACAATA
14997510 TTATTTAAAAAAACTAAACCCTAAATTAATTAATTTTTT-AAA-AACACTAAACCTTAATTTATT
1 TTATTTAAAAAAACTAAACCCTAAATTAATTAATTTTTTAAAAGAACACTAAACCTTAATTTATT
14997573 TAAT
66 TAAT
*** * * *
14997577 TTATTTAAAACCCCTAAACCCTAATTTAATTAATTTTTTAAAAAGAACACTAAATCTTGATTTAT
1 TTATTTAAAAAAACTAAACCCTAAATTAATTAATTTTTT-AAAAGAACACTAAACCTTAATTTAT
14997642 TT
65 TT
14997644 TTTAAAATTC
Statistics
Matches: 58, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
67 35 0.60
69 3 0.05
70 20 0.34
ACGTcount: A:0.44, C:0.13, G:0.01, T:0.41
Consensus pattern (69 bp):
TTATTTAAAAAAACTAAACCCTAAATTAATTAATTTTTTAAAAGAACACTAAACCTTAATTTATT
TAAT
Found at i:14997594 original size:34 final size:33
Alignment explanation
Indices: 14997513--14997620 Score: 153
Period size: 33 Copynumber: 3.2 Consensus size: 33
14997503 CACAATATTA
* *
14997513 TTTAAAAAAACTAAACCCTAAATTAATTAATTT
1 TTTAAAAACACTAAACCCTAATTTAATTAATTT
* *
14997546 TTTAAAAACACTAAACCTTAATTTATTTAATTT
1 TTTAAAAACACTAAACCCTAATTTAATTAATTT
* *
14997579 ATTTAAAACCCCTAAACCCTAATTTAATTAATTT
1 -TTTAAAAACACTAAACCCTAATTTAATTAATTT
14997613 TTTAAAAA
1 TTTAAAAA
14997621 GAACACTAAA
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
33 36 0.55
34 29 0.45
ACGTcount: A:0.46, C:0.14, G:0.00, T:0.40
Consensus pattern (33 bp):
TTTAAAAACACTAAACCCTAATTTAATTAATTT
Found at i:14997690 original size:21 final size:21
Alignment explanation
Indices: 14997665--14997735 Score: 61
Period size: 21 Copynumber: 3.4 Consensus size: 21
14997655 TAAAACTTAG
14997665 AACCCTAAATTATTTTAACAA
1 AACCCTAAATTATTTTAACAA
*** *** **
14997686 AACCCTAAACCCTACAAACCT
1 AACCCTAAATTATTTTAACAA
*
14997707 AACCTTAAATTATTTTAACAA
1 AACCCTAAATTATTTTAACAA
14997728 AACCCTAA
1 AACCCTAA
14997736 CCCTAAAAAT
Statistics
Matches: 32, Mismatches: 18, Indels: 0
0.64 0.36 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.46, C:0.27, G:0.00, T:0.27
Consensus pattern (21 bp):
AACCCTAAATTATTTTAACAA
Found at i:14997729 original size:42 final size:42
Alignment explanation
Indices: 14997665--14997750 Score: 138
Period size: 42 Copynumber: 2.0 Consensus size: 42
14997655 TAAAACTTAG
*
14997665 AACCCTAAATTATTTTAACAAAACCCTAAACCCTACAAA-CCT
1 AACCCTAAATTATTTTAACAAAACCCT-AACCCTAAAAATCCT
*
14997707 AACCTTAAATTATTTTAACAAAACCCTAACCCTAAAAATCCT
1 AACCCTAAATTATTTTAACAAAACCCTAACCCTAAAAATCCT
14997749 AA
1 AA
14997751 ACCAAAAAAC
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
41 10 0.24
42 31 0.76
ACGTcount: A:0.47, C:0.28, G:0.00, T:0.26
Consensus pattern (42 bp):
AACCCTAAATTATTTTAACAAAACCCTAACCCTAAAAATCCT
Found at i:15000461 original size:4 final size:4
Alignment explanation
Indices: 15000454--15000490 Score: 74
Period size: 4 Copynumber: 9.2 Consensus size: 4
15000444 CGGTGTTTGT
15000454 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
15000491 GCCCATTTTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:15000789 original size:109 final size:108
Alignment explanation
Indices: 15000653--15000971 Score: 471
Period size: 109 Copynumber: 2.9 Consensus size: 108
15000643 ATTTTTTTTT
15000653 AAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGAT
1 AAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGAT
15000718 TTTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAAATTTC
66 TTTTCTCGTT-GACCAAATAGCCAAATATCCTTTTAAAAATTTC
* *
15000762 AAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAAGGTGCCCTAATGTGCTGGATTTCGAT
1 AAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGAT
* * *
15000827 TTTTCTCGCTTGACCAAATAACTAAATATCCTTTCAAAAATTTC
66 TTTTCTCG-TTGACCAAATAGCCAAATATCCTTTTAAAAATTTC
* * * * * * *
15000871 AAAATAAGGCAATGTTTTGTGTTTGGAAACTCAAGAAAACTTGCTCTAATGCGTTGGGTTTCGA-
1 AAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGAT
* *
15000935 -TTTCTCGTTGGACCAAATAGCCGAATATCCTCTTAAA
66 TTTTCTCGTT-GACCAAATAGCCAAATATCCTTTTAAA
15000972 TCTTAATCTA
Statistics
Matches: 189, Mismatches: 19, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
106 2 0.01
107 29 0.15
109 156 0.83
110 2 0.01
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (108 bp):
AAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGAT
TTTTCTCGTTGACCAAATAGCCAAATATCCTTTTAAAAATTTC
Found at i:15004800 original size:23 final size:23
Alignment explanation
Indices: 15004774--15004871 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
15004764 ATAAGTGCCA
15004774 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
15004797 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
15004820 CACTG-GATGTAGCCAAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
15004842 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
15004865 CACTGAT
1 CACTGAT
15004872 CAATAACACT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
22 20 0.29
23 49 0.71
ACGTcount: A:0.32, C:0.27, G:0.21, T:0.20
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:15004839 original size:45 final size:45
Alignment explanation
Indices: 15004781--15004869 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
15004771 CCACACTGAT
* *
15004781 ATGTAGCCGAAGCTACCACTGATATGTAGCCGAAGCTACCACTGG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
15004826 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
15004870 ATCAATAACA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.31, C:0.27, G:0.22, T:0.19
Consensus pattern (45 bp):
ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
Found at i:15007257 original size:25 final size:26
Alignment explanation
Indices: 15007228--15007291 Score: 89
Period size: 25 Copynumber: 2.5 Consensus size: 26
15007218 AATTGTTAAA
*
15007228 AAAAAGAAAAGAAAGAAG-GAAAAAT
1 AAAAAGAAAAGAAAGAAGAAAAAAAT
15007253 AAAAA-AGAAAG-AAGAAGAAAAAAAT
1 AAAAAGA-AAAGAAAGAAGAAAAAAAT
15007278 AAAAAGAAAAGAAA
1 AAAAAGAAAAGAAA
15007292 AAATGAGAGG
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
24 7 0.21
25 24 0.71
26 3 0.09
ACGTcount: A:0.80, C:0.00, G:0.17, T:0.03
Consensus pattern (26 bp):
AAAAAGAAAAGAAAGAAGAAAAAAAT
Found at i:15007258 original size:21 final size:22
Alignment explanation
Indices: 15007225--15007286 Score: 81
Period size: 21 Copynumber: 2.7 Consensus size: 22
15007215 TAAAATTGTT
15007225 AAAAAAAAGAAAAGAAAGAAG-G
1 AAAAAAAA-AAAAGAAAGAAGAG
*
15007247 AAAAATAAAAAAGAAAGAAGAAG
1 AAAAAAAAAAAAGAAAGAAG-AG
15007270 AAAAAAATAAAAAGAAA
1 AAAAAAA-AAAAAGAAA
15007287 AGAAAAAATG
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
21 12 0.34
22 7 0.20
23 7 0.20
24 9 0.26
ACGTcount: A:0.81, C:0.00, G:0.16, T:0.03
Consensus pattern (22 bp):
AAAAAAAAAAAAGAAAGAAGAG
Found at i:15007261 original size:17 final size:17
Alignment explanation
Indices: 15007228--15007294 Score: 53
Period size: 18 Copynumber: 3.7 Consensus size: 17
15007218 AATTGTTAAA
*
15007228 AAAAAGAAAAGAAAGAAGG
1 AAAAAG-AAA-AAAGAAAG
*
15007247 AAAAATAAAAAAGAAAG
1 AAAAAGAAAAAAGAAAG
* * *
15007264 AAGAAGAAAAAAATAAAA
1 AAAAAG-AAAAAAGAAAG
15007282 AGAAAAGAAAAAA
1 A-AAAAGAAAAAA
15007295 TGAGAGGCCA
Statistics
Matches: 39, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
17 11 0.28
18 19 0.49
19 9 0.23
ACGTcount: A:0.81, C:0.00, G:0.16, T:0.03
Consensus pattern (17 bp):
AAAAAGAAAAAAGAAAG
Found at i:15007267 original size:24 final size:24
Alignment explanation
Indices: 15007225--15007291 Score: 82
Period size: 24 Copynumber: 2.7 Consensus size: 24
15007215 TAAAATTGTT
15007225 AAAAAAAAGAAAAGAAAGAAGGAAAA
1 AAAAAAAAG-AAAGAAAGAA-GAAAA
*
15007251 ATAAAAAAGAAAG-AAGAAGAAAA
1 AAAAAAAAGAAAGAAAGAAGAAAA
15007274 AAATAAAAAGAAAAGAAA
1 AAA-AAAAAG-AAAGAAA
15007292 AAATGAGAGG
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
23 7 0.19
24 11 0.31
25 8 0.22
26 10 0.28
ACGTcount: A:0.81, C:0.00, G:0.16, T:0.03
Consensus pattern (24 bp):
AAAAAAAAGAAAGAAAGAAGAAAA
Found at i:15008715 original size:44 final size:44
Alignment explanation
Indices: 15008667--15008879 Score: 152
Period size: 44 Copynumber: 4.8 Consensus size: 44
15008657 AAACCACCAC
* *
15008667 TCCTATCTCCCTAAGCAGTAGTGGAGTAGGTCGAAGATTGTAGA
1 TCCTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGATTGCAGA
* * *
15008711 TCCTATCTTCCTAAGCAGTAGTGGAGCAGATCGAAGACAGTG-A-A
1 TCCTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAG--ATTGCAGA
* * * * ** * *
15008755 TCTTATCTTTCC-AAGGTAGTAG-GGAAGCAGATTTAA-A--CCACCA
1 TCCTATC-TCCCTAA-GCAGTAGTGG-AGTAGATCGAAGATTGCA-GA
*
15008798 CTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTCGAAGATTGCAGA
1 -TCCTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGATTGCAGA
* * * *
15008843 TTCTATCTCCCTAAGTAATAGTGAAGTAGATCGAAGA
1 TCCTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGA
15008880 CAGTGAATCT
Statistics
Matches: 132, Mismatches: 23, Indels: 28
0.72 0.13 0.15
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 17 0.13
44 87 0.66
45 21 0.16
46 5 0.04
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (44 bp):
TCCTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGATTGCAGA
Found at i:15008919 original size:132 final size:132
Alignment explanation
Indices: 15008535--15008891 Score: 579
Period size: 132 Copynumber: 2.7 Consensus size: 132
15008525 AAGCCATTAG
* * * * *
15008535 TCCTATCTCCCTGAGCAGCAGTGGAGTAGGTCGAATATTGTAGATCCTGTCTCTCTAAGCAGTAG
1 TCCTATCTCCCTAAGCAGTAGTGGAGTAGGTCGAAGATTGTAGATCCTATCTCCCTAAGCAGTAG
* * *
15008600 TGGAGCAGATCAAAGACGGTGAATCTTATCTTTCCAAGGTAGTAGGGAAGCAAATTTAAACCACC
66 TGGAGCAGATCGAAGACAGTGAATCTTATCTTTCCAAGGTAGTAGGGAAGCAGATTTAAACCACC
15008665 AC
131 AC
*
15008667 TCCTATCTCCCTAAGCAGTAGTGGAGTAGGTCGAAGATTGTAGATCCTATCTTCCTAAGCAGTAG
1 TCCTATCTCCCTAAGCAGTAGTGGAGTAGGTCGAAGATTGTAGATCCTATCTCCCTAAGCAGTAG
15008732 TGGAGCAGATCGAAGACAGTGAATCTTATCTTTCCAAGGTAGTAGGGAAGCAGATTTAAACCACC
66 TGGAGCAGATCGAAGACAGTGAATCTTATCTTTCCAAGGTAGTAGGGAAGCAGATTTAAACCACC
15008797 AC
131 AC
* * * *
15008799 TCCTATCTCCCTAAGCAGTAGTGGAGTAGGTCGAAGATTGCAGATTCTATCTCCCTAAGTAATAG
1 TCCTATCTCCCTAAGCAGTAGTGGAGTAGGTCGAAGATTGTAGATCCTATCTCCCTAAGCAGTAG
* *
15008864 TGAAGTAGATCGAAGACAGTGAATCTTA
66 TGGAGCAGATCGAAGACAGTGAATCTTA
15008892 CTTCCTTGGT
Statistics
Matches: 209, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
132 209 1.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.26
Consensus pattern (132 bp):
TCCTATCTCCCTAAGCAGTAGTGGAGTAGGTCGAAGATTGTAGATCCTATCTCCCTAAGCAGTAG
TGGAGCAGATCGAAGACAGTGAATCTTATCTTTCCAAGGTAGTAGGGAAGCAGATTTAAACCACC
AC
Found at i:15008946 original size:50 final size:50
Alignment explanation
Indices: 15008884--15009493 Score: 382
Period size: 50 Copynumber: 12.2 Consensus size: 50
15008874 CGAAGACAGT
** ** * * *
15008884 GAATCTTACTTCCTTGGTGGTGCAGTGGAACAGATTGAAGCTACAACAGC
1 GAATCTTACTTCCCCGACGGTGCAGTGGAAAAGATTGAAGCCACAACGGC
* ** * ** * * *
15008934 GAATCTTGCTTCCCCGACATTGCAATTAAAAATATTGAGGCCATAACGGC
1 GAATCTTACTTCCCCGACGGTGCAGTGGAAAAGATTGAAGCCACAACGGC
* * * * *
15008984 AAATCTTACTTCCCAGACGGTGCAGTGGAACAGATTGAAGCTACAACGGT
1 GAATCTTACTTCCCCGACGGTGCAGTGGAAAAGATTGAAGCCACAACGGC
** ** * * ** *
15009034 GAATCTCGCTTCCCCGACATTGAAATTAAAAAGATTGAAGCCACAACAGC
1 GAATCTTACTTCCCCGACGGTGCAGTGGAAAAGATTGAAGCCACAACGGC
* * * * * * *
15009084 GAATCTTACTTTCCTGGCGGTGTAGTGGAACAGATTGAAGCTACAACGGT
1 GAATCTTACTTCCCCGACGGTGCAGTGGAAAAGATTGAAGCCACAACGGC
* ** * ** *
15009134 GAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAGGCCACAACGGC
1 GAATCTTACTTCCCCGACGGTGCAGTGGAAAAGATTGAAGCCACAACGGC
* * * * *** *
15009184 AAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGTTGCAACGGT
1 GAATCTTACTTCCCCGACGGTGCAGTGGAAAAGATTGAAGCCACAACGGC
** *** * * * *
15009234 GAATCTCGCTTCCCCGATATTGAAAT-TAAAAGATTGAGGCCACAACGGC
1 GAATCTTACTTCCCCGACGGTGCAGTGGAAAAGATTGAAGCCACAACGGC
* ** * *
15009283 GAATCTTACATT-CCAGGTGGTGCAGTGGAATAGATTGAAGCGACAACGGC
1 GAATCTTAC-TTCCCCGACGGTGCAGTGGAAAAGATTGAAGCCACAACGGC
** ** * * * * *
15009333 GAATCTCGCTTCCCCGACATTGTAAT-TAAAAGATTGAGGCCACAACGGT
1 GAATCTTACTTCCCCGACGGTGCAGTGGAAAAGATTGAAGCCACAACGGC
* ** * *
15009382 GAATCTTACTTCCCTGGTGGTGCAGTGGAATAGATTGAAGCTACAACGGC
1 GAATCTTACTTCCCCGACGGTGCAGTGGAAAAGATTGAAGCCACAACGGC
* ** ** * * *
15009432 GAATCTTTCTTCCCCGACATTGCA-TTTAAATAGATTGAAGCTACAACAGT
1 GAATCTTACTTCCCCGACGGTGCAGTGGAAA-AGATTGAAGCCACAACGGC
15009482 GAATCTTACTTC
1 GAATCTTACTTC
15009494 TCTGACGAAC
Statistics
Matches: 398, Mismatches: 157, Indels: 10
0.70 0.28 0.02
Matches are distributed among these distances:
49 71 0.18
50 327 0.82
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.25
Consensus pattern (50 bp):
GAATCTTACTTCCCCGACGGTGCAGTGGAAAAGATTGAAGCCACAACGGC
Done.