Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62811768
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 736185 characters in sequence are not A, C, G, or T
File 56 of 211
Found at i:15009319 original size:99 final size:100
Alignment explanation
Indices: 15008884--15009493 Score: 839
Period size: 100 Copynumber: 6.1 Consensus size: 100
15008874 CGAAGACAGT
* * * *
15008884 GAATCTTACTTCCTTGGTGGTGCAGTGGAACAGATTGAAGCTACAACAGCGAATCTTGCTTCCCC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTCGCTTCCCC
* *
15008949 GACATTGCAATTAAAAATATTGAGGCCATAACGGC
66 GACATTGCAATTAAAAAGATTGAGGCCACAACGGC
* * * *
15008984 AAATCTTACTTCCCAGACGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTCGCTTCCCC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTCGCTTCCCC
* * *
15009049 GACATTGAAATTAAAAAGATTGAAGCCACAACAGC
66 GACATTGCAATTAAAAAGATTGAGGCCACAACGGC
* * * *
15009084 GAATCTTACTTTCCTGGCGGTGTAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTCGCTTCCCC
15009149 GACATTGCAATTAAAAAGATTGAGGCCACAACGGC
66 GACATTGCAATTAAAAAGATTGAGGCCACAACGGC
* * * *
15009184 AAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGTTGCAACGGTGAATCTCGCTTCCCC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTCGCTTCCCC
* *
15009249 GATATTGAAATT-AAAAGATTGAGGCCACAACGGC
66 GACATTGCAATTAAAAAGATTGAGGCCACAACGGC
* * * *
15009283 GAATCTTACATT-CCAGGTGGTGCAGTGGAATAGATTGAAGCGACAACGGCGAATCTCGCTTCCC
1 GAATCTTAC-TTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTCGCTTCCC
* *
15009347 CGACATTGTAATT-AAAAGATTGAGGCCACAACGGT
65 CGACATTGCAATTAAAAAGATTGAGGCCACAACGGC
* * **
15009382 GAATCTTACTTCCCTGGTGGTGCAGTGGAATAGATTGAAGCTACAACGGCGAATCTTTCTTCCCC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTCGCTTCCCC
* * * * * *
15009447 GACATTGCATTTAAATAGATTGAAGCTACAACAGT
66 GACATTGCAATTAAAAAGATTGAGGCCACAACGGC
15009482 GAATCTTACTTC
1 GAATCTTACTTC
15009494 TCTGACGAAC
Statistics
Matches: 456, Mismatches: 51, Indels: 6
0.89 0.10 0.01
Matches are distributed among these distances:
98 2 0.00
99 175 0.38
100 279 0.61
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.25
Consensus pattern (100 bp):
GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTCGCTTCCCC
GACATTGCAATTAAAAAGATTGAGGCCACAACGGC
Found at i:15011222 original size:22 final size:22
Alignment explanation
Indices: 15011167--15011222 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
15011157 TTTACCATTC
**
15011167 ATATATATATGTATATATTTTT
1 ATATATATATACATATATTTTT
*
15011189 ATAATATGTATACAT-TATTTTT
1 AT-ATATATATACATATATTTTT
15011211 GATATATATATA
1 -ATATATATATA
15011223 TGTATTTATA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
22 17 0.61
23 11 0.39
ACGTcount: A:0.39, C:0.02, G:0.05, T:0.54
Consensus pattern (22 bp):
ATATATATATACATATATTTTT
Found at i:15011857 original size:109 final size:109
Alignment explanation
Indices: 15011666--15012092 Score: 655
Period size: 109 Copynumber: 3.9 Consensus size: 109
15011656 AATTTTTTTT
*
15011666 AAAATAAGGCAATGTTTTGCGTTTGGAAATTTGAGAAAACGTGCCCTAATGTGCTGGGTTTCGAT
1 AAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGAT
*
15011731 TTTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAAATTTC
66 TTTTCTCGTTCGACCAAATAACCAAATATCCTTTTAAAAATTTC
* * *
15011775 AAAATAAGGCAACGTTTTGCGTTTGGAAATTCGAGAAAATGTGCCATAATGTGCTGGGTTTCGAT
1 AAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGAT
15011840 TTTTCTCGTTCGACCAAATAACCAAATATCCTTTTAAAAATTTC
66 TTTTCTCGTTCGACCAAATAACCAAATATCCTTTTAAAAATTTC
15011884 AAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGAT
1 AAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGAT
* *
15011949 TTTTCTCGCTT-GACCAAATAACTAAATATCCTTTCAAAAATTTC
66 TTTTCTCG-TTCGACCAAATAACCAAATATCCTTTTAAAAATTTC
* * * * * *
15011993 AAAATAAGGCAGTGTTTTGTGTTTGGAAACTCGAG-AAACTTGCTCTAATGCGCTGGGTTTCGA-
1 AAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGAT
* * ** *
15012056 -TTTCTCATTGGACCAAATAGTCGAATATCCTTTTAAA
66 TTTTCTCGTTCGACCAAATAACCAAATATCCTTTTAAA
15012093 TCTTAATCCA
Statistics
Matches: 294, Mismatches: 22, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
105 2 0.01
106 28 0.10
108 25 0.09
109 237 0.81
110 2 0.01
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.34
Consensus pattern (109 bp):
AAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGAT
TTTTCTCGTTCGACCAAATAACCAAATATCCTTTTAAAAATTTC
Found at i:15032567 original size:16 final size:16
Alignment explanation
Indices: 15032546--15032578 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
15032536 TGAGAAAAGA
15032546 AATCTTGTCCTGGGGC
1 AATCTTGTCCTGGGGC
15032562 AATCTTGTCCTGGGGC
1 AATCTTGTCCTGGGGC
15032578 A
1 A
15032579 GCTGGCTCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.15, C:0.24, G:0.30, T:0.30
Consensus pattern (16 bp):
AATCTTGTCCTGGGGC
Found at i:15059532 original size:64 final size:64
Alignment explanation
Indices: 15059414--15059538 Score: 142
Period size: 64 Copynumber: 2.0 Consensus size: 64
15059404 TCATTAAGAG
* * * * * ** * * *
15059414 TCATATATCGGGACGCTCATAAAGAGTTGCGGTATATCTGCATTATATGTAGGATCCATACCGA
1 TCATATAACAGGACGCTCACAAAGAGCTGCGGTATATCAGCAACACATGCAGGATCAATACCGA
* *
15059478 TCATATAACAGGATGCTCACAAAGAGCTGTGGTATATCAGCAACACATGCAGGATCAATAC
1 TCATATAACAGGACGCTCACAAAGAGCTGCGGTATATCAGCAACACATGCAGGATCAATAC
15059539 TGATGGGATG
Statistics
Matches: 49, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
64 49 1.00
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.26
Consensus pattern (64 bp):
TCATATAACAGGACGCTCACAAAGAGCTGCGGTATATCAGCAACACATGCAGGATCAATACCGA
Found at i:15065429 original size:17 final size:18
Alignment explanation
Indices: 15065407--15065447 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
15065397 AGTTAAAATG
15065407 TAATTT-TATTATTT-TAA
1 TAATTTATATT-TTTATAA
15065424 TAATTTATATTTTTATAA
1 TAATTTATATTTTTATAA
15065442 -AATTTA
1 TAATTTA
15065448 AAAGATTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 15 0.68
18 7 0.32
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
TAATTTATATTTTTATAA
Found at i:15069754 original size:16 final size:17
Alignment explanation
Indices: 15069722--15069754 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
15069712 AAATGGCACC
*
15069722 TCAATTCAAACACCAAA
1 TCAATCCAAACACCAAA
15069739 TCAATCCAAA-ACCAAA
1 TCAATCCAAACACCAAA
15069755 GCTATGTCCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.55, C:0.30, G:0.00, T:0.15
Consensus pattern (17 bp):
TCAATCCAAACACCAAA
Found at i:15070551 original size:36 final size:36
Alignment explanation
Indices: 15070436--15070551 Score: 128
Period size: 35 Copynumber: 3.2 Consensus size: 36
15070426 GGTGCCTAAT
* *
15070436 GGATAAATCGTAACAAAGTTTTGCACCCAGCACTAGTC
1 GGATAAATCG--ACAAAGATTTGCACCTAGCACTAGTC
* * *
15070474 GGATAAACCGACAATAGATGTG--CCTTGCACTAGTC
1 GGATAAATCGACAA-AGATTTGCACCTAGCACTAGTC
* *
15070509 GAATAAATCGACAAAGATTTGCACCTAGCGCTAGTC
1 GGATAAATCGACAAAGATTTGCACCTAGCACTAGTC
15070545 GGATAAA
1 GGATAAA
15070552 CTGATAGTCA
Statistics
Matches: 64, Mismatches: 11, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
34 6 0.09
35 23 0.36
36 21 0.33
37 5 0.08
38 9 0.14
ACGTcount: A:0.35, C:0.22, G:0.21, T:0.22
Consensus pattern (36 bp):
GGATAAATCGACAAAGATTTGCACCTAGCACTAGTC
Found at i:15073678 original size:19 final size:19
Alignment explanation
Indices: 15073640--15073680 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
15073630 AAAATTTTAA
* *
15073640 AATATTTTTCATAATGTTT
1 AATATTTTTAATAATATTT
*
15073659 AATATTTTTAATGATATTT
1 AATATTTTTAATAATATTT
15073678 AAT
1 AAT
15073681 TTTGAAAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.02, G:0.05, T:0.56
Consensus pattern (19 bp):
AATATTTTTAATAATATTT
Found at i:15076822 original size:3 final size:3
Alignment explanation
Indices: 15076814--15076839 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
15076804 TAATTGATTA
15076814 ATG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG AT
15076840 ATCATTTAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.31, T:0.35
Consensus pattern (3 bp):
ATG
Found at i:15077367 original size:80 final size:80
Alignment explanation
Indices: 15077230--15077380 Score: 221
Period size: 80 Copynumber: 1.9 Consensus size: 80
15077220 TGTGATAGAT
* ** * *
15077230 TAAAATTTGTATATACGATTGAATTTAGTCAATTGAGTATTAGTTCGATTGGTATGGATATTGTT
1 TAAAATTTGTATATACAATTGAATTTAGTCAATTGAGTATTAACTCGATTGGCATGGACATTGTT
*
15077295 GTCAATGTAAGAGAA
66 GCCAATGTAAGAGAA
* * *
15077310 TAAAATTTTTATATACAATTGAATTTGGTCGATTGAGTATTAACTCGATTGGCATGGACATTGTT
1 TAAAATTTGTATATACAATTGAATTTAGTCAATTGAGTATTAACTCGATTGGCATGGACATTGTT
15077375 GCCAAT
66 GCCAAT
15077381 ACAGGAGGAC
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
80 62 1.00
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (80 bp):
TAAAATTTGTATATACAATTGAATTTAGTCAATTGAGTATTAACTCGATTGGCATGGACATTGTT
GCCAATGTAAGAGAA
Found at i:15079664 original size:16 final size:16
Alignment explanation
Indices: 15079633--15079684 Score: 59
Period size: 16 Copynumber: 3.1 Consensus size: 16
15079623 TTCATACATG
* *
15079633 TTCAAAACATACCATA
1 TTCAAAACAAATCATA
15079649 TTCAAAACAAATCATA
1 TTCAAAACAAATCATA
*
15079665 TTATATAAACAAATCATA
1 TT-CA-AAACAAATCATA
15079683 TT
1 TT
15079685 ATATAAACAT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
16 16 0.52
17 1 0.03
18 14 0.45
ACGTcount: A:0.52, C:0.17, G:0.00, T:0.31
Consensus pattern (16 bp):
TTCAAAACAAATCATA
Found at i:15079676 original size:18 final size:18
Alignment explanation
Indices: 15079653--15079693 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
15079643 ACCATATTCA
15079653 AAACAAATCATATTATAT
1 AAACAAATCATATTATAT
15079671 AAACAAATCATATTATAT
1 AAACAAATCATATTATAT
15079689 AAACA
1 AAACA
15079694 TGCACCTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.59, C:0.12, G:0.00, T:0.29
Consensus pattern (18 bp):
AAACAAATCATATTATAT
Found at i:15086859 original size:4 final size:4
Alignment explanation
Indices: 15086845--15086879 Score: 61
Period size: 4 Copynumber: 8.5 Consensus size: 4
15086835 ACAGGCACCC
15086845 ATGG CATGG ATGG ATGG ATGG ATGG ATGG ATGG AT
1 ATGG -ATGG ATGG ATGG ATGG ATGG ATGG ATGG AT
15086880 TGTTAGAGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 26 0.87
5 4 0.13
ACGTcount: A:0.26, C:0.03, G:0.46, T:0.26
Consensus pattern (4 bp):
ATGG
Found at i:15093622 original size:24 final size:23
Alignment explanation
Indices: 15093582--15093626 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
15093572 TCAAAGGTTT
*
15093582 AAAGACCTAAATAGTAAATAAGA
1 AAAGACCAAAATAGTAAATAAGA
*
15093605 AAAGATCCAAAATGGTAAATAA
1 AAAGA-CCAAAATAGTAAATAA
15093627 ACCATTTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.60, C:0.09, G:0.13, T:0.18
Consensus pattern (23 bp):
AAAGACCAAAATAGTAAATAAGA
Found at i:15094261 original size:13 final size:13
Alignment explanation
Indices: 15094243--15094274 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
15094233 CGAGTTAGTA
15094243 AATATTATTTAAT
1 AATATTATTTAAT
15094256 AATATTATTTAAT
1 AATATTATTTAAT
15094269 AATATT
1 AATATT
15094275 TAAGAGTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (13 bp):
AATATTATTTAAT
Found at i:15097393 original size:16 final size:16
Alignment explanation
Indices: 15097372--15097405 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
15097362 ATTATTTAAT
15097372 AATATCAAAGATTCTC
1 AATATCAAAGATTCTC
*
15097388 AATATCAAATATTCTC
1 AATATCAAAGATTCTC
15097404 AA
1 AA
15097406 CACTCTCCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.47, C:0.18, G:0.03, T:0.32
Consensus pattern (16 bp):
AATATCAAAGATTCTC
Found at i:15105882 original size:43 final size:43
Alignment explanation
Indices: 15105835--15105941 Score: 119
Period size: 43 Copynumber: 2.5 Consensus size: 43
15105825 CGAACGTGGT
* * *
15105835 CTTACATGTAATCACATATCGATGCC-ACTGTCCCAGACATGGC
1 CTTACATGTAAACACATATCGATGCCAAC-ATCACAGACATGGC
* * *
15105878 CTTACACGTAAACACA-AGTCGATGCCAACATCACAGACGTGGT
1 CTTACATGTAAACACATA-TCGATGCCAACATCACAGACATGGC
*
15105921 CTTACATGAAAACACATATCG
1 CTTACATGTAAACACATATCG
15105942 GAATCCTATG
Statistics
Matches: 53, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
42 1 0.02
43 49 0.92
44 3 0.06
ACGTcount: A:0.34, C:0.28, G:0.16, T:0.22
Consensus pattern (43 bp):
CTTACATGTAAACACATATCGATGCCAACATCACAGACATGGC
Found at i:15108927 original size:92 final size:92
Alignment explanation
Indices: 15108806--15109570 Score: 1244
Period size: 92 Copynumber: 8.3 Consensus size: 92
15108796 GTTTTATACA
* * * *
15108806 TTGCCGAATTAATTCGTATATAATTATACATTGCTAAAATTTATTTGTATATGGTTATATATTAT
1 TTGCCGAATTGATTCGTATATGATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTAT
*
15108871 CGAAATTGATTTGTATATAAAGATAAG
66 CGAAATTGATTTGTATATGAAGATAAG
* *
15108898 TTGTCAAATTGATTCGTATATGATTATACATTTG-TGAAATTTATTTGTATATGGTTATACATTA
1 TTGCCGAATTGATTCGTATATGATTATACA-TTGCTGAAATTTATTTGTATATGGTTATACATTA
*
15108962 TCGAAATTGATTTGTAAATGAAGATAAG
65 TCGAAATTGATTTGTATATGAAGATAAG
* * * *
15108990 TTGTCGAATTGATTCGTATATAATTATACATTGCTGAAATTTGTTTGTACATGGTTATACATTAT
1 TTGCCGAATTGATTCGTATATGATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTAT
15109055 CGAAATTGATTTGTATATGAAGATAAG
66 CGAAATTGATTTGTATATGAAGATAAG
*
15109082 TTGCCGAATTGATTCGTATATGATTATACTTTGCTGAAATTTATTTGTATATGGTTATACATTAT
1 TTGCCGAATTGATTCGTATATGATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTAT
* * *
15109147 CAAAATTTATTTGTATATGAAGATAAA
66 CGAAATTGATTTGTATATGAAGATAAG
* *
15109174 TTGCCGAATTGATTCGTATATGATTATACTTTGCTGAAATATATTTGTATATGGTTATACATTAT
1 TTGCCGAATTGATTCGTATATGATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTAT
*
15109239 CGAAATTGATTTGTAAATGAAGATAAG
66 CGAAATTGATTTGTATATGAAGATAAG
15109266 TTGCCGAATTGATTCGTATATGATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTAT
1 TTGCCGAATTGATTCGTATATGATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTAT
*
15109331 CGAAATTGATTTGTAAATGAAGATAAG
66 CGAAATTGATTTGTATATGAAGATAAG
* ** * *
15109358 TTGTCGAATTGATTCGTATACAATTATACATTGCTAAAATTTATTTGTATATGGTTATGCATTAT
1 TTGCCGAATTGATTCGTATATGATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTAT
15109423 CGAAATTGATTTGTATATGAAGATAAG
66 CGAAATTGATTTGTATATGAAGATAAG
* *
15109450 TTGCCGAATTGATTCGTATATGATTATACTTTGCTAAAATTTATTTGTATATGGTTATACATTAT
1 TTGCCGAATTGATTCGTATATGATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTAT
*
15109515 CAAAATTGATTTGTATATGAAGATAAG
66 CGAAATTGATTTGTATATGAAGATAAG
*
15109542 TTGCCGAATTTGATTCGTATATGAATATA
1 TTGCCGAA-TTGATTCGTATATGATTATA
15109571 TATATTGTTG
Statistics
Matches: 629, Mismatches: 41, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
91 3 0.00
92 604 0.96
93 22 0.03
ACGTcount: A:0.34, C:0.07, G:0.16, T:0.43
Consensus pattern (92 bp):
TTGCCGAATTGATTCGTATATGATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTAT
CGAAATTGATTTGTATATGAAGATAAG
Found at i:15109774 original size:43 final size:41
Alignment explanation
Indices: 15109713--15109829 Score: 144
Period size: 43 Copynumber: 2.8 Consensus size: 41
15109703 TATGTGATCT
15109713 CGTGTAAGACCATGTCTGGGACATTGGCATCGAAGTAAGAAAA
1 CGTGTAAGACCATGTCTGGGACATTGGCATCGAA-TAAG-AAA
* * * **
15109756 CGTGTAAGACCATGTCTGGGACATGGGCATCGTATATGATT
1 CGTGTAAGACCATGTCTGGGACATTGGCATCGAATAAGAAA
* * *
15109797 CGTATAAGACCCTGTCTGGGACAGTGGCATCGA
1 CGTGTAAGACCATGTCTGGGACATTGGCATCGA
15109830 TATGCGTTAA
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
41 29 0.45
42 3 0.05
43 32 0.50
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (41 bp):
CGTGTAAGACCATGTCTGGGACATTGGCATCGAATAAGAAA
Found at i:15112189 original size:15 final size:15
Alignment explanation
Indices: 15112169--15112205 Score: 74
Period size: 15 Copynumber: 2.5 Consensus size: 15
15112159 CAGACTGTGA
15112169 TTGCTTTCTATTTGT
1 TTGCTTTCTATTTGT
15112184 TTGCTTTCTATTTGT
1 TTGCTTTCTATTTGT
15112199 TTGCTTT
1 TTGCTTT
15112206 ATATGAGATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.05, C:0.14, G:0.14, T:0.68
Consensus pattern (15 bp):
TTGCTTTCTATTTGT
Found at i:15116156 original size:23 final size:23
Alignment explanation
Indices: 15116130--15116228 Score: 144
Period size: 23 Copynumber: 4.3 Consensus size: 23
15116120 ATAAGTGCCA
*
15116130 CACTGATATGTAGCTGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
15116153 CACTGATACGTAGCCGTAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
15116176 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
15116199 CACTGATATGTAGTCGTAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
15116222 CACTGAT
1 CACTGAT
15116229 CAATAACACT
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 67 1.00
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.24
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:15116197 original size:46 final size:46
Alignment explanation
Indices: 15116130--15116227 Score: 160
Period size: 46 Copynumber: 2.1 Consensus size: 46
15116120 ATAAGTGCCA
* *
15116130 CACTGATATGTAGCTGAAGCTACCACTGATACGTAGCCGTAGCTAC
1 CACTGAAATGTAGCCGAAGCTACCACTGATACGTAGCCGTAGCTAC
* *
15116176 CACTGAAATGTAGCCGAAGCTACCACTGATATGTAGTCGTAGCTAC
1 CACTGAAATGTAGCCGAAGCTACCACTGATACGTAGCCGTAGCTAC
15116222 CACTGA
1 CACTGA
15116228 TCAATAACAC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (46 bp):
CACTGAAATGTAGCCGAAGCTACCACTGATACGTAGCCGTAGCTAC
Found at i:15120128 original size:24 final size:24
Alignment explanation
Indices: 15120096--15120142 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
15120086 CTAAATTTAT
*
15120096 AACACTTTCCTTTC-CTTTCTCTTC
1 AACACTTTCC-ATCACTTTCTCTTC
*
15120120 AACATTTTCCATCACTTTCTCTT
1 AACACTTTCCATCACTTTCTCTT
15120143 ATTTCCTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 2 0.10
24 18 0.90
ACGTcount: A:0.17, C:0.34, G:0.00, T:0.49
Consensus pattern (24 bp):
AACACTTTCCATCACTTTCTCTTC
Found at i:15122844 original size:11 final size:13
Alignment explanation
Indices: 15122830--15122863 Score: 54
Period size: 11 Copynumber: 2.8 Consensus size: 13
15122820 AATTTCATGA
15122830 AAAAATTTCG-T-
1 AAAAATTTCGTTC
15122841 AAAAATTTCGTTC
1 AAAAATTTCGTTC
15122854 AAAAATTTCG
1 AAAAATTTCG
15122864 ACGTTTGGGC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 10 0.48
12 1 0.05
13 10 0.48
ACGTcount: A:0.44, C:0.12, G:0.09, T:0.35
Consensus pattern (13 bp):
AAAAATTTCGTTC
Found at i:15122846 original size:24 final size:24
Alignment explanation
Indices: 15122818--15122863 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
15122808 TTTATCGTCT
15122818 AAAATTTCATGAAAAAATTTCGTA
1 AAAATTTCATGAAAAAATTTCGTA
* **
15122842 AAAATTTCGTTCAAAAATTTCG
1 AAAATTTCATGAAAAAATTTCG
15122864 ACGTTTGGGC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.46, C:0.11, G:0.09, T:0.35
Consensus pattern (24 bp):
AAAATTTCATGAAAAAATTTCGTA
Found at i:15124243 original size:102 final size:101
Alignment explanation
Indices: 15124067--15124410 Score: 424
Period size: 102 Copynumber: 3.4 Consensus size: 101
15124057 TATCGATGAA
* *
15124067 CACGTGTATAGTACTGTGTGAAGGCTACTACGTGTATCGATAAATGATGGTC-CAATGTGTAGTA
1 CACGTGTATAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGATGGTCAC-ATGTGTAGTA
* *
15124131 CTAAGTGAAGGCTACAATGTGTACCGAGAAGCTTTGGT
65 CTAAGTGAAGGCTACTATGTGTACCGA-AAACTTTGGT
* * *
15124169 CACGTGTGTAGTATTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
1 CACGTGTATAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
* *
15124234 TAAGTGAAGGCTACTATGTGTACCGAAAATTTTTTGT
66 TAAGTGAAGGCTACTATGTGTACCGAAAA-CTTTGGT
* * *** * *
15124271 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAAACTTGATCACGTGTGTAGTAC
1 CACGTGTATAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
* * * * *
15124335 TATGTAAAGGCTACTACGTGAACCGTAAAAC-TTGAT
66 TAAGTGAAGGCTACTATGTGTACCG-AAAACTTTGGT
* *
15124371 CACGTGTATAGTACAATGTGAAGGCTACTACGTGTATCGA
1 CACGTGTATAGTACTATGTGAAGGCTACTACGTGAATCGA
15124411 ATGATAAAAG
Statistics
Matches: 212, Mismatches: 26, Indels: 9
0.86 0.11 0.04
Matches are distributed among these distances:
100 38 0.18
101 43 0.20
102 130 0.61
103 1 0.00
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.30
Consensus pattern (101 bp):
CACGTGTATAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
TAAGTGAAGGCTACTATGTGTACCGAAAACTTTGGT
Found at i:15124337 original size:50 final size:50
Alignment explanation
Indices: 15124067--15124404 Score: 322
Period size: 51 Copynumber: 6.7 Consensus size: 50
15124057 TATCGATGAA
* * * * ***
15124067 CACGTGTATAGTACTGTGTGAAGGCTACTACGTGTATCGATAAATGATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAAACTTGGT
* * * * * *
15124118 C-CAATGTGTAGTACTAAGTGAAGGCTACAATGTGTACCG-AGAAGCTTTGGT
1 CAC-GTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTA-AAAC-TTGGT
* * * ***
15124169 CACGTGTGTAGTATTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAAACTTGGT
* * * * * *
15124220 CACATGTGTAGTACTAAGTGAAGGCTACTATGTGTACCG-AAAATTTTTTGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAA--CTTGGT
*
15124271 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGGT
* *
15124321 CACGTGTGTAGTACTATGTAAAGGCTACTACGTGAACCGTAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGGT
* *
15124371 CACGTGTATAGTACAATGTGAAGGCTACTACGTG
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG
15124405 TATCGAATGA
Statistics
Matches: 235, Mismatches: 43, Indels: 19
0.79 0.14 0.06
Matches are distributed among these distances:
49 4 0.02
50 86 0.37
51 137 0.58
52 7 0.03
53 1 0.00
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.30
Consensus pattern (50 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGGT
Found at i:15126328 original size:669 final size:670
Alignment explanation
Indices: 15125048--15126393 Score: 2380
Period size: 669 Copynumber: 2.0 Consensus size: 670
15125038 AAAATTTTAT
*
15125048 GGTAAGAAGGTATATGAGTCTAGTTTTTTGAAAATTTATGGATCTTAATTTCGAGTTCTGTAACT
1 GGTAAGAAGGTATATGAGTCTAGTTTTTGGAAAATTTATGGATCTTAATTTCGAGTTCTGTAACT
* * *
15125113 CCAGATAAAAATTATTTAGTGACTGTGATGCAGAGAAATAGTTTGCTGGAAATTGAATAGATAAT
66 CCAGATAAAAATTATTTAGTGACTATGACGCAGAGAAACAGTTTGCTGGAAATTGAATAGATAAT
*
15125178 AGATTTATGTATGATAAAAGTTATATTATATATGGTATCATGCTAGAAATTTATTTATCAATTAC
131 AGATTTATGTATGATAAAAATTATATTATATATGGTATCATGCTAGAAATTTATTTATCAATTAC
15125243 ATACATACTTAATAAGCTATAAGCTTACTCGTCTTTATTTTTCTCTTGTTTTATAGTGATATTAA
196 ATACATACTTAATAAGCTATAAGCTTACTCGTCTTTATTTTTCTCTTGTTTTATAGTGATATTAA
* *
15125308 TCAGCTCGGGAATTGGACGGGGTCAGAACATCATATACCCTACCATAATCATCTTTTGGGTATTT
261 TCAGCTCGGGAATTGGACGGGGTCAGAACATCATACACACTACCATAATCATCTTTTGGGTATTT
15125373 TGCAACCAATACTTTGAAAAATGGCATGTATAGATGACTTAATATAATGTGGTATAAATTTATAT
326 TGCAACCAATACTTTGAAAAATGGCATGTATAGATGACTTAATATAATGTGGTATAAATTTATAT
15125438 ATATATGTATAAAATATTGTTTGGTTTAAAATGTTGGTGTAATTAATTGATAAATTGTTTCCTTA
391 ATATATGTATAAAATATTGTTTGGTTTAAAATGTTGGTGTAATTAATTGATAAATTGTTTCCTTA
15125503 AACTATTAACAAAGTAATTAGAATGTTGTGGATGGATAAATTGTGTATGAACATATAATTGTATT
456 AACTATTAACAAAGTAATTAGAATGTTGTGGATGGATAAATTGTGTATGAACATATAATTGTATT
15125568 TGGTTGAAATATTGAAGTTGTTTGAAATTGTGTTTCGAGAATTTGCAGGAGGAATTGAATGTTTA
521 TGGTTGAAATATTGAAGTTGTTTGAAATTGTGTTTCGAGAATTTGCAGGAGGAATTGAATGTTTA
* *
15125633 TGAAAAGAAATTATGTCAAAATTTTTGTAAAAAAAAAATCATATCGTTTGATAACACTTCTTACT
586 TGAAAAGAAATTATATCAAAATTTTTGTAAAAAAAAAATCAGATCGTTTGATAACACTTCTTACT
15125698 TTGTTTCGATGATGAATACG
651 TTGTTTCGATGATGAATACG
* * *
15125718 GGTAAGAAGTTATATTAGTCTAGTTTTTGGGAAAA-TTA-GAGATCTTAATTTGGAGTT-TCGTA
1 GGTAAGAAGGTATATGAGTCTAGTTTTT-GGAAAATTTATG-GATCTTAATTTCGAGTTCT-GTA
* * *
15125780 GCTCCGGATAAAAATTATTTAGTGACTATGACG-AGAGAAACAGTTTTCTGGAAATTGAATAGAT
63 ACTCCAGATAAAAATTATTTAGTGACTATGACGCAGAGAAACAGTTTGCTGGAAATTGAATAGAT
15125844 AATAGATTTATGTATGATAAAAATTATATTATATATGGTATCATGCTAGAAATTTATTTATCAAT
128 AATAGATTTATGTATGATAAAAATTATATTATATATGGTATCATGCTAGAAATTTATTTATCAAT
* * *
15125909 TACATACATACTTACTAAGCTATAAGCTTACTCTTTTTTATTTTTCTCTTGTTTTATAGTGATAT
193 TACATACATACTTAATAAGCTATAAGCTTACTCGTCTTTATTTTTCTCTTGTTTTATAGTGATAT
* * *
15125974 TAATCAGCTCGGGAATTGGACGGGGTCAGAACATCATCCACACTATCATCATCATCTTTTGGGTA
258 TAATCAGCTCGGGAATTGGACGGGGTCAGAACATCATACACACTACCATAATCATCTTTTGGGTA
*
15126039 TTTTGCAACCAATACTTTGAAAAAATGGCATGTATAGATGACTTAATGTAATGTGGTATAAA-TT
323 TTTTGCAACCAATACTTTG-AAAAATGGCATGTATAGATGACTTAATATAATGTGGTATAAATTT
15126103 -TATATATATGTATAAAATATTGTTTGGTTTAAAATGTTGGTGTATATTAATTGATAAATTGTTT
387 ATATATATATGTATAAAATATTGTTTGGTTTAAAATGTTGGTGTA-ATTAATTGATAAATTGTTT
15126167 CCTTAAACTATTAACAAAGTAATTAGAATGTTGTGGATGGATAAATTGTGTATGAACATATAATT
451 CCTTAAACTATTAACAAAGTAATTAGAATGTTGTGGATGGATAAATTGTGTATGAACATATAATT
15126232 GTATTTGGTTGAAATATTGAAGTTGTTTGAAATTGTGTTTCGAGAATTTGCAGGAGGAATTGAAT
516 GTATTTGGTTGAAATATTGAAGTTGTTTGAAATTGTGTTTCGAGAATTTGCAGGAGGAATTGAAT
* *
15126297 GTTTATGAAAAGAAATTATATCAACATTTTTGTAAAAAAAAATTCAGATCGTTTGATAACACTTC
581 GTTTATGAAAAGAAATTATATCAAAATTTTTGTAAAAAAAAAATCAGATCGTTTGATAACACTTC
*
15126362 TTACTTTGTTTCGATGATGAGTACG
646 TTACTTTGTTTCGATGATGAATACG
15126387 GGTAAGA
1 GGTAAGA
15126394 GGTGTTACAT
Statistics
Matches: 646, Mismatches: 25, Indels: 11
0.95 0.04 0.02
Matches are distributed among these distances:
668 44 0.07
669 479 0.74
670 118 0.18
671 5 0.01
ACGTcount: A:0.35, C:0.09, G:0.18, T:0.39
Consensus pattern (670 bp):
GGTAAGAAGGTATATGAGTCTAGTTTTTGGAAAATTTATGGATCTTAATTTCGAGTTCTGTAACT
CCAGATAAAAATTATTTAGTGACTATGACGCAGAGAAACAGTTTGCTGGAAATTGAATAGATAAT
AGATTTATGTATGATAAAAATTATATTATATATGGTATCATGCTAGAAATTTATTTATCAATTAC
ATACATACTTAATAAGCTATAAGCTTACTCGTCTTTATTTTTCTCTTGTTTTATAGTGATATTAA
TCAGCTCGGGAATTGGACGGGGTCAGAACATCATACACACTACCATAATCATCTTTTGGGTATTT
TGCAACCAATACTTTGAAAAATGGCATGTATAGATGACTTAATATAATGTGGTATAAATTTATAT
ATATATGTATAAAATATTGTTTGGTTTAAAATGTTGGTGTAATTAATTGATAAATTGTTTCCTTA
AACTATTAACAAAGTAATTAGAATGTTGTGGATGGATAAATTGTGTATGAACATATAATTGTATT
TGGTTGAAATATTGAAGTTGTTTGAAATTGTGTTTCGAGAATTTGCAGGAGGAATTGAATGTTTA
TGAAAAGAAATTATATCAAAATTTTTGTAAAAAAAAAATCAGATCGTTTGATAACACTTCTTACT
TTGTTTCGATGATGAATACG
Found at i:15126668 original size:16 final size:16
Alignment explanation
Indices: 15126639--15126672 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
15126629 ACTATTTAAT
15126639 AATATAAAAAATTCTC
1 AATATAAAAAATTCTC
* *
15126655 AATATCAAAGATTCTC
1 AATATAAAAAATTCTC
15126671 AA
1 AA
15126673 CTAACTTCGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.53, C:0.15, G:0.03, T:0.29
Consensus pattern (16 bp):
AATATAAAAAATTCTC
Found at i:15126996 original size:36 final size:36
Alignment explanation
Indices: 15126937--15127009 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
15126927 CACTCATATT
* * *
15126937 CCAACGAATAGTTTGCACTTTTTACATTTTATATCG
1 CCAACAAATAGTTCGCACATTTTACATTTTATATCG
*
15126973 CCAACAAATCGTTCGCACATTTTACATTTTATATCG
1 CCAACAAATAGTTCGCACATTTTACATTTTATATCG
15127009 C
1 C
15127010 TAGTAAACAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.29, C:0.23, G:0.10, T:0.38
Consensus pattern (36 bp):
CCAACAAATAGTTCGCACATTTTACATTTTATATCG
Found at i:15128731 original size:45 final size:42
Alignment explanation
Indices: 15128657--15128779 Score: 122
Period size: 41 Copynumber: 2.9 Consensus size: 42
15128647 ATATGTGTTC
* **
15128657 TCGTGTAAGACCACGTCTGGGATGATGGCATCGATATATGTAAT
1 TCGTGTAAGACCATGTCTGGGACAATGGCATCGATAT-T-TAAT
* ** *
15128701 TACGTGTAAGACCATGTCTAGGACCTTGGCATCG-TATTTGAT
1 T-CGTGTAAGACCATGTCTGGGACAATGGCATCGATATTTAAT
* * *
15128743 TCGTGTAAAACCCTGTCTGGGACAGTGGCATCGATAT
1 TCGTGTAAGACCATGTCTGGGACAATGGCATCGATAT
15128780 GAGATAGCAT
Statistics
Matches: 66, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
41 27 0.41
42 7 0.11
43 1 0.02
44 4 0.06
45 27 0.41
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (42 bp):
TCGTGTAAGACCATGTCTGGGACAATGGCATCGATATTTAAT
Found at i:15133057 original size:20 final size:20
Alignment explanation
Indices: 15133032--15133072 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
15133022 TAATTTTTTT
*
15133032 TTAAAATTATTTAAAT-TTAA
1 TTAAAA-TATATAAATATTAA
15133052 TTAAAATATATAAATATTAA
1 TTAAAATATATAAATATTAA
15133072 T
1 T
15133073 ATATTTTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
TTAAAATATATAAATATTAA
Found at i:15134128 original size:20 final size:20
Alignment explanation
Indices: 15134088--15134137 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
15134078 TTTCCTATAA
15134088 TTATAA-TTTCAAAACATATT
1 TTATAATTTTCAAAACATA-T
*
15134108 TTATAATTTTGAAAACA-AT
1 TTATAATTTTCAAAACATAT
15134127 TTATGAATTTT
1 TTAT-AATTTT
15134138 AAGATTTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
19 5 0.19
20 13 0.48
21 9 0.33
ACGTcount: A:0.42, C:0.06, G:0.04, T:0.48
Consensus pattern (20 bp):
TTATAATTTTCAAAACATAT
Found at i:15134155 original size:28 final size:31
Alignment explanation
Indices: 15134124--15134180 Score: 84
Period size: 28 Copynumber: 1.9 Consensus size: 31
15134114 TTTTGAAAAC
15134124 AATTTATGA-A-TTTTAA-GATTTTTTAATA
1 AATTTATGATATTTTTAATGATTTTTTAATA
*
15134152 AATTTATGATATTTTTAATTATTTTTTAA
1 AATTTATGATATTTTTAATGATTTTTTAA
15134181 CCATGGTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 9 0.36
29 1 0.04
30 6 0.24
31 9 0.36
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (31 bp):
AATTTATGATATTTTTAATGATTTTTTAATA
Found at i:15137631 original size:23 final size:23
Alignment explanation
Indices: 15137594--15137638 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
15137584 TGCCCATATC
* *
15137594 TCTACTAGTATTAAATCATTTAT
1 TCTACTACTACTAAATCATTTAT
*
15137617 TCTACTACTACTAAATCTTTTA
1 TCTACTACTACTAAATCATTTA
15137639 GGGTGTGTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.33, C:0.18, G:0.02, T:0.47
Consensus pattern (23 bp):
TCTACTACTACTAAATCATTTAT
Found at i:15141340 original size:13 final size:13
Alignment explanation
Indices: 15141322--15141352 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
15141312 CATTATTCCC
15141322 TTTCTCTATAATA
1 TTTCTCTATAATA
15141335 TTTCTCTATAATA
1 TTTCTCTATAATA
15141348 TTTCT
1 TTTCT
15141353 TATTCCCTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.26, C:0.16, G:0.00, T:0.58
Consensus pattern (13 bp):
TTTCTCTATAATA
Found at i:15146262 original size:45 final size:45
Alignment explanation
Indices: 15146203--15146293 Score: 112
Period size: 45 Copynumber: 2.0 Consensus size: 45
15146193 CTATATCACC
* * *
15146203 TTATTATTCTCCATATTATCATTTATATTGTTATTATT-CTCTTTG
1 TTATTATTCCCCATATTATCATTTATACTCTTATTATTGC-CTTTG
* * *
15146248 TTATTGTTCCCCATATTATTATTTGTACTCTTATTATTGCCTTTG
1 TTATTATTCCCCATATTATCATTTATACTCTTATTATTGCCTTTG
15146293 T
1 T
15146294 CATGCATGTT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
45 38 0.97
46 1 0.03
ACGTcount: A:0.20, C:0.15, G:0.07, T:0.58
Consensus pattern (45 bp):
TTATTATTCCCCATATTATCATTTATACTCTTATTATTGCCTTTG
Found at i:15146695 original size:126 final size:126
Alignment explanation
Indices: 15146507--15146842 Score: 525
Period size: 126 Copynumber: 2.7 Consensus size: 126
15146497 TCAAAAGGGT
* **
15146507 AAAATTTCGAAAAT-AAGGCAATATTTTATATTTTAG-AAATTCGAGAAATTGTACCCTAACTTA
1 AAAATTTTGAAAATAAAGGCAATATTTCGTA-TTTAGAAAATTCGAGAAATTGTACCCTAACTTA
** *
15146570 CTGGGTCTCGATTTTCTCGTTAAACCTAAATAGAAAAATATCTTTTTAAATTTCCAAAAGTA
65 CTGGGTCTCGATTTTCTCGTTAAACCTAAATAGAAAAATATCCATTTAAATTTCCAAAAATA
15146632 AAAATTTTGAAAATAAAGGCAATATTTCGTATTTAGAAAATTCGAGAAATTGTACCCTAACTTAC
1 AAAATTTTGAAAATAAAGGCAATATTTCGTATTTAGAAAATTCGAGAAATTGTACCCTAACTTAC
*
15146697 TGGGTCTCGATTTTCTCGTTAAACCTAAATAGCAAAATATCCATTTAAATTTCCAAAAATA
66 TGGGTCTCGATTTTCTCGTTAAACCTAAATAGAAAAATATCCATTTAAATTTCCAAAAATA
* *
15146758 AAAATTTTGAAAATAAAGGCAATATTTCGTATTTAGAAAATTCGAGAAAATCGTGCCCTAACTTA
1 AAAATTTTGAAAATAAAGGCAATATTTCGTATTTAGAAAATTCGAG-AAATTGTACCCTAACTTA
*
15146823 CTGAG-CTTCGATTTTTCTCG
65 CTGGGTC-TCGA-TTTTCTCG
15146843 CGTTGATCCT
Statistics
Matches: 196, Mismatches: 10, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
125 18 0.09
126 146 0.74
127 24 0.12
128 8 0.04
ACGTcount: A:0.39, C:0.15, G:0.12, T:0.35
Consensus pattern (126 bp):
AAAATTTTGAAAATAAAGGCAATATTTCGTATTTAGAAAATTCGAGAAATTGTACCCTAACTTAC
TGGGTCTCGATTTTCTCGTTAAACCTAAATAGAAAAATATCCATTTAAATTTCCAAAAATA
Found at i:15150277 original size:19 final size:18
Alignment explanation
Indices: 15150252--15150308 Score: 62
Period size: 19 Copynumber: 3.1 Consensus size: 18
15150242 ACTTCACTTG
* *
15150252 AAAAAAAATGGAAAGAAA
1 AAAAAAAAAGAAAAGAAA
15150270 AAAGAAAAAAGAAAAGAAA
1 AAA-AAAAAAGAAAAGAAA
*
15150289 AAAAAAACAA-AATAGAAA
1 AAAAAAA-AAGAAAAGAAA
15150307 AA
1 AA
15150309 GGAGAGGCCA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
18 16 0.47
19 18 0.53
ACGTcount: A:0.82, C:0.02, G:0.12, T:0.04
Consensus pattern (18 bp):
AAAAAAAAAGAAAAGAAA
Found at i:15150283 original size:18 final size:18
Alignment explanation
Indices: 15150262--15150308 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 18
15150252 AAAAAAAATG
15150262 GAAAGAAAAAAGAAAA-AA
1 GAAAGAAAAAA-AAAACAA
15150280 GAAAAGAAAAAAAAAACAA
1 G-AAAGAAAAAAAAAACAA
15150299 -AATAGAAAAA
1 GAA-AGAAAAA
15150309 GGAGAGGCCA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
17 2 0.08
18 12 0.46
19 12 0.46
ACGTcount: A:0.83, C:0.02, G:0.13, T:0.02
Consensus pattern (18 bp):
GAAAGAAAAAAAAAACAA
Found at i:15150284 original size:12 final size:12
Alignment explanation
Indices: 15150269--15150307 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
15150259 ATGGAAAGAA
15150269 AAAAGAAAAAAG
1 AAAAGAAAAAAG
15150281 AAAAGAAAAAA-
1 AAAAGAAAAAAG
* *
15150292 AAAACAAAATAG
1 AAAAGAAAAAAG
15150304 AAAA
1 AAAA
15150308 AGGAGAGGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
11 9 0.38
12 15 0.62
ACGTcount: A:0.85, C:0.03, G:0.10, T:0.03
Consensus pattern (12 bp):
AAAAGAAAAAAG
Found at i:15150288 original size:23 final size:23
Alignment explanation
Indices: 15150262--15150307 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
15150252 AAAAAAAATG
* *
15150262 GAAAGAAAAAAGAAAAAAGAAAA
1 GAAAAAAAAAACAAAAAAGAAAA
*
15150285 GAAAAAAAAAACAAAATAGAAAA
1 GAAAAAAAAAACAAAAAAGAAAA
15150308 AGGAGAGGCC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.83, C:0.02, G:0.13, T:0.02
Consensus pattern (23 bp):
GAAAAAAAAAACAAAAAAGAAAA
Found at i:15150295 original size:11 final size:11
Alignment explanation
Indices: 15150251--15150300 Score: 55
Period size: 11 Copynumber: 4.5 Consensus size: 11
15150241 TACTTCACTT
**
15150251 GAAAAAAAATG
1 GAAAAAAAAAA
*
15150262 GAAAGAAAAAA
1 GAAAAAAAAAA
15150273 GAAAAAAGAAAA
1 GAAAAAA-AAAA
15150285 GAAAAAAAAAA
1 GAAAAAAAAAA
*
15150296 CAAAA
1 GAAAA
15150301 TAGAAAAAGG
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
11 22 0.67
12 11 0.33
ACGTcount: A:0.82, C:0.02, G:0.14, T:0.02
Consensus pattern (11 bp):
GAAAAAAAAAA
Found at i:15150836 original size:108 final size:108
Alignment explanation
Indices: 15150647--15150842 Score: 286
Period size: 108 Copynumber: 1.8 Consensus size: 108
15150637 TTTGTATTCT
*
15150647 AGCAAAATTTGCTATCTTGATTAATTTGTTCATTTAGAGCTTTGCGCTCAACAAATTTCCATCTT
1 AGCAAAATTTGCTATCTTGATTAATTTATTCATTTAGAGCTTTGCGCTCAACAAATTTCCATCTT
15150712 ATCCATTGTGATAATCTTTTTCATCTTATACATCTCGTATCTC
66 ATCCATTGTGATAATCTTTTTCATCTTATACATCTCGTATCTC
* * * ** * *
15150755 AGCAAATTTTGCTATCTTGGTTGATTTATTTGTTTAGAGCTTTGCTCTCGACAAAATTT-CATCT
1 AGCAAAATTTGCTATCTTGATTAATTTATTCATTTAGAGCTTTGCGCTCAAC-AAATTTCCATCT
* *
15150819 TGTCCATTTTGATAATCTTTTTCA
65 TATCCATTGTGATAATCTTTTTCA
15150843 AGCATTTTTC
Statistics
Matches: 77, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
108 71 0.92
109 6 0.08
ACGTcount: A:0.24, C:0.18, G:0.12, T:0.45
Consensus pattern (108 bp):
AGCAAAATTTGCTATCTTGATTAATTTATTCATTTAGAGCTTTGCGCTCAACAAATTTCCATCTT
ATCCATTGTGATAATCTTTTTCATCTTATACATCTCGTATCTC
Found at i:15151518 original size:88 final size:88
Alignment explanation
Indices: 15151266--15151669 Score: 526
Period size: 88 Copynumber: 4.6 Consensus size: 88
15151256 CCCTAGAGAA
* * * ** * ** *
15151266 CAGATCGAAGACACAAGCCTTGCCTCCCTCGTTTACAGTGGAGCTGGTCAAAGATAGCAGATCTT
1 CAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGATAACAGATCTT
15151331 GCCTTCCTGCATTAACAGCGAAG
66 GCCTTCCTGCATTAACAGCGAAG
* * * * * *
15151354 CAGATCGAAAACA-AAACCTTGCCTC-CATTGGTTGCAGTGGAGCTGGTTAAAGA-AATAGATCT
1 CAGATCGAAGACACAAACCTTGCCTCTC-TCGGTTGTAGCGGAGCTGGTTGAAGATAACAGATCT
*
15151416 TGCCTTCCTGCATTAATAGCGAAG
65 TGCCTTCCTGCATTAACAGCGAAG
* *
15151440 CAGATCGAATACACAAACCTTGCCTCTCTCGGTTGTAGCAGAGCTGGTTGAAGATAACAGATCTT
1 CAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGATAACAGATCTT
15151505 GCCTTCCTGCATTAACAGCGAAG
66 GCCTTCCTGCATTAACAGCGAAG
* * * * *
15151528 CAAATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAACGGAGCTGGTTGAAGACAATAAATCTT
1 CAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGATAACAGATCTT
* * *
15151593 GCCTTTCTGCATTAACAGTGAAA
66 GCCTTCCTGCATTAACAGCGAAG
* *
15151616 CAGATCGAAGACACAAACCTTACCTCTCTCAGTTGTAGCGGAGCTGGTTGAAGA
1 CAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGA
15151670 CATCAAGTCT
Statistics
Matches: 281, Mismatches: 31, Indels: 8
0.88 0.10 0.03
Matches are distributed among these distances:
86 43 0.15
87 66 0.23
88 172 0.61
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.25
Consensus pattern (88 bp):
CAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGATAACAGATCTT
GCCTTCCTGCATTAACAGCGAAG
Found at i:15151644 original size:176 final size:174
Alignment explanation
Indices: 15151264--15151669 Score: 553
Period size: 174 Copynumber: 2.3 Consensus size: 174
15151254 TTCCCTAGAG
* * * ** * ** *
15151264 AACAGATCGAAGACACAAGCCTTGCCTCCCTCGTTTACAGTGGAGCTGGTCAAAGATAGCAGATC
1 AACAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGATAACAGATC
* * **
15151329 TTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAACCTTGCCTCCATTGGTTGCAGTGG
66 TTGCCTTCCTGCATTAACAGCGAAGCAAATCGAAAACAAAACCTTGCCTCCATCGGTTGCAACGG
* *
15151394 AGCTGGTTAAAGAAATAGATCTTGCCTTCCTGCATTAATAGCGA
131 AGCTGGTTAAAGAAATAAATCTTGCCTTCCTGCATTAACAGCGA
* * *
15151438 AGCAGATCGAATACACAAACCTTGCCTCTCTCGGTTGTAGCAGAGCTGGTTGAAGATAACAGATC
1 AACAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGATAACAGATC
* *
15151503 TTGCCTTCCTGCATTAACAGCGAAGCAAATCGAAGACACAAACCTTGCCTCTC-TCGGTTGTAAC
66 TTGCCTTCCTGCATTAACAGCGAAGCAAATCGAAAACA-AAACCTTGCCTC-CATCGGTTGCAAC
* * *
15151567 GGAGCTGGTTGAAGACAATAAATCTTGCCTTTCTGCATTAACAGTGA
129 GGAGCTGGTTAAAGA-AATAAATCTTGCCTTCCTGCATTAACAGCGA
* *
15151614 AACAGATCGAAGACACAAACCTTACCTCTCTCAGTTGTAGCGGAGCTGGTTGAAGA
1 AACAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGA
15151670 CATCAAGTCT
Statistics
Matches: 201, Mismatches: 28, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
174 89 0.44
175 33 0.16
176 79 0.39
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.24
Consensus pattern (174 bp):
AACAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGATAACAGATC
TTGCCTTCCTGCATTAACAGCGAAGCAAATCGAAAACAAAACCTTGCCTCCATCGGTTGCAACGG
AGCTGGTTAAAGAAATAAATCTTGCCTTCCTGCATTAACAGCGA
Found at i:15151810 original size:84 final size:84
Alignment explanation
Indices: 15151669--15152662 Score: 1179
Period size: 84 Copynumber: 11.8 Consensus size: 84
15151659 CTGGTTGAAG
15151669 ACATCAAGTCTTATCTCCCTAAGAAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTA
1 ACATCAAGTCTTATCTCCCTAAGAAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTA
15151734 AGCAGTAGTGGAGCAGATC
66 AGCAGTAGTGGAGCAGATC
15151753 ACATCAAGTCTTATCTCCCTAAGAAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTA
1 ACATCAAGTCTTATCTCCCTAAGAAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTA
15151818 AGCAGTAGTGGAGCAGATC
66 AGCAGTAGTGGAGCAGATC
*
15151837 ACATCAAGTCTTATCTCCCTAAGAAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATATCCCTA
1 ACATCAAGTCTTATCTCCCTAAGAAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTA
15151902 AGCAGTAGTGGAGCAGATC
66 AGCAGTAGTGGAGCAGATC
*
15151921 ACATCAAGTCTTATCTCCCTAAGAAGTAGTGGAGCAGACAAAAGAAACCACAGATCTTATCTCCC
1 ACATCAAGTCTTATCTCCCTAAGAAGTAGTGGAGCAGACGAAAGAAA-C-CAGATCTTATCTCCC
15151986 TAAGCAGTAGTGGAGCAGATC
64 TAAGCAGTAGTGGAGCAGATC
* *
15152007 ACATCAAGTCTTATCTCCCTGAGCAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTA
1 ACATCAAGTCTTATCTCCCTAAGAAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTA
*
15152072 AGTAGTAGTGGAGCAGATC
66 AGCAGTAGTGGAGCAGATC
15152091 ACATCAAGTCTTATCTCCCTAAGAAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTA
1 ACATCAAGTCTTATCTCCCTAAGAAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTA
*
15152156 AGCAGTAGTGGAACAGATC
66 AGCAGTAGTGGAGCAGATC
*
15152175 ACATCAAGTCTTATCTCCCTAAGAAGTAGTGGAGCAGACGAAAAAAACCAGATCTTATCTCCCTA
1 ACATCAAGTCTTATCTCCCTAAGAAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTA
*
15152240 AGCAGTAGTGGGGCAGATC
66 AGCAGTAGTGGAGCAGATC
* * * *
15152259 ACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGATC---A-CATCAAG-TCTTATCTCCCT
1 ACATCAAGTCTTATCTCCCTAAGAAGTAGTGGAGCAGA-CGAAAGAAACCAGATCTTATCTCCCT
*
15152319 AAGAAGTAGTGGAGCAGA-C
65 AAGCAGTAGTGGAGCAGATC
* * * * * * * *
15152338 GAAAGAAACCAGATCTTATATCCCTAAGCAGTAGTGGAGCAGATC---A-CATCAAG-TCTTATC
1 ---A-CATCAAG-TCTTATCTCCCTAAGAAGTAGTGGAGCAGA-CGAAAGAAACCAGATCTTATC
*
15152398 TCCCTAAGAAGTAGTGGAGCAGA-C
60 TCCCTAAGCAGTAGTGGAGCAGATC
* * * * *
15152422 AAAAGAAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC----GCATCCAG-TCTTA
1 -----ACATCA-AG-TCTTATCTCCCTAAGAAGTAGTGGAGCAGA-CGAAAGAAACCAGATCTTA
*
15152482 TCTCCCTAAGTAGTAGTGGAGCAGA-C
58 TCTCCCTAAGCAGTAGTGGAGCAGATC
* ** * * ** *
15152508 AGAAAAAAAAATCAA-TCTTATCTCCCTGAAGTTGCAGTGGAGCTGA-TTAA-AATCACAGATCT
1 --------ACATCAAGTCTTATCTCCCT-AAGAAGTAGTGGAGCAGACGAAAGAAAC-CAGATCT
* * * *
15152570 TATCTCTCTGAAGTTA-CAGTAGAGCAGATC
56 TATCTCCCT-AAG-CAGTAGTGGAGCAGATC
* * *
15152600 ACATCAAGTCTTATCTCCCTAAGCAGTAGCGGAGCAGACGAAAGAAACCA-ATCCTATCTCCCT
1 ACATCAAGTCTTATCTCCCTAAGAAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCT
15152663 GAAGTTATAG
Statistics
Matches: 830, Mismatches: 52, Indels: 56
0.88 0.06 0.06
Matches are distributed among these distances:
79 1 0.00
80 28 0.03
81 4 0.00
82 2 0.00
83 4 0.00
84 546 0.66
85 22 0.03
86 166 0.20
87 14 0.02
88 4 0.00
89 12 0.01
90 11 0.01
91 13 0.02
92 3 0.00
ACGTcount: A:0.35, C:0.23, G:0.20, T:0.22
Consensus pattern (84 bp):
ACATCAAGTCTTATCTCCCTAAGAAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTA
AGCAGTAGTGGAGCAGATC
Found at i:15152289 original size:338 final size:335
Alignment explanation
Indices: 15151669--15152662 Score: 1209
Period size: 338 Copynumber: 2.9 Consensus size: 335
15151659 CTGGTTGAAG
*
15151669 ACATCAAGTCTTATCTCCCTAAGAAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTA
1 ACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTA
*
15151734 AGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGAAGTAGTGGAGCAGACGAAAGAA
66 AGAAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGAAGTAGTGGAGCAGACGAAAGAA
*
15151799 ACCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGAAGT
131 ACCAGATCTTATCTCCCTAAGCAGTAGTGGAACAGATCACATCAAGTCTTATCTCCCTAAGAAGT
* *
15151864 AGTGGAGCAGACGAAAGAAACCAGATCTTATATCCCTAAGCAGTAGTGGAGCAGATCACATCAAG
196 AGTGGAGCAGACGAAAAAAACCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAG
* *
15151929 TCTTATCTCCCTAAGAAGTAGTGGAGCAGACAAAAGAAACCACAGATCTTATCTCCCTAAGCAGT
261 TCTTATCTCCCTAAGCAGTAGTGGAGCAGAC-AAAGAAACCA-AG-TCTTATCTCCCTAAGAAGT
15151994 AGTGGAGCAGATC-
323 AGTGGAGCAGA-CA
*
15152007 ACATCAAGTCTTATCTCCCTGAGCAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTA
1 ACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTA
*
15152072 AGTAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGAAGTAGTGGAGCAGACGAAAGAA
66 AGAAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGAAGTAGTGGAGCAGACGAAAGAA
15152137 ACCAGATCTTATCTCCCTAAGCAGTAGTGGAACAGATCACATCAAGTCTTATCTCCCTAAGAAGT
131 ACCAGATCTTATCTCCCTAAGCAGTAGTGGAACAGATCACATCAAGTCTTATCTCCCTAAGAAGT
*
15152202 AGTGGAGCAGACGAAAAAAACCAGATCTTATCTCCCTAAGCAGTAGTGGGGCAGATCACATCAAG
196 AGTGGAGCAGACGAAAAAAACCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAG
* *
15152267 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATC----ACATCAAGTCTTATCTCCCTAAGAAGTAG
261 TCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CAAAGAAACCAAGTCTTATCTCCCTAAGAAGTAG
15152328 TGGAGCAGACGAA
325 TGGAGCAGAC--A
* * * * * * *
15152341 AGAAACCAGATCTTATATCCCTAAGCAGTAGTGGAGCAGATC---A-CATCAAG-TCTTATCTCC
1 A-CATCAAG-TCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CGAAAGAAACCAGATCTTATCTCC
* * *
15152401 CTAAGAAGTAGTGGAGCAGA-CAAAAGAAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCA
63 CTAAGAAGTAGTGGAGCAGATC-----ACATCA-AG-TCTTATCTCCCTAAGAAGTAGTGGAGCA
* * * ** *
15152465 GATC----GCATCCAG-TCTTATCTCCCTAAGTAGTAGTGGAGCAGACAGAAAAAAAAATCAA-T
121 GA-CGAAAGAAACCAGATCTTATCTCCCTAAGCAGTAGT-G-G-A-ACAG---ATCACATCAAGT
** * * ** ** * * *
15152524 CTTATCTCCCTGAAGTTGCAGTGGAGCTGATTAAAATCA-CAGATCTTATCTCTCTGAAGTTA-C
178 CTTATCTCCCT-AAGAAGTAGTGGAGCAGACGAAAAAAACCAGATCTTATCTCCCT-AAG-CAGT
* *
15152587 AGTAGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGCGGAGCAGACGAAAGAAACCAA-
240 AGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGAC-AAAGAAACCAAG
*
15152651 TCCTATCTCCCT
304 TCTTATCTCCCT
15152663 GAAGTTATAG
Statistics
Matches: 580, Mismatches: 46, Indels: 54
0.85 0.07 0.08
Matches are distributed among these distances:
331 2 0.00
332 58 0.10
333 6 0.01
334 27 0.05
335 11 0.02
336 33 0.06
337 4 0.01
338 315 0.54
339 2 0.00
340 28 0.05
341 77 0.13
342 1 0.00
344 11 0.02
345 5 0.01
ACGTcount: A:0.35, C:0.23, G:0.20, T:0.22
Consensus pattern (335 bp):
ACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTA
AGAAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGAAGTAGTGGAGCAGACGAAAGAA
ACCAGATCTTATCTCCCTAAGCAGTAGTGGAACAGATCACATCAAGTCTTATCTCCCTAAGAAGT
AGTGGAGCAGACGAAAAAAACCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAG
TCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAGAAACCAAGTCTTATCTCCCTAAGAAGTAGT
GGAGCAGACA
Found at i:15152497 original size:86 final size:85
Alignment explanation
Indices: 15152267--15152534 Score: 432
Period size: 86 Copynumber: 3.1 Consensus size: 85
15152257 TCACATCAAG
15152267 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGAAGTAGTGGA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGAAGTAGTGGA
*
15152332 GCAGACGAAAGAAAC-CAGA
66 GCAGACAAAAGAAACACAGA
*
15152351 TCTTATATCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGAAGTAGTGGA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGAAGTAGTGGA
15152416 GCAGACAAAAGAAACCACAGA
66 GCAGACAAAAGAAA-CACAGA
* * *
15152437 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCCAGTCTTATCTCCCTAAGTAGTAGTGGA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGAAGTAGTGGA
* *
15152502 GCAGACAGAAAAAAAAATCA-A
66 GCAGACA-AAAGAAACA-CAGA
15152523 TCTTATCTCCCT
1 TCTTATCTCCCT
15152535 GAAGTTGCAG
Statistics
Matches: 172, Mismatches: 8, Indels: 6
0.92 0.04 0.03
Matches are distributed among these distances:
84 77 0.45
85 1 0.01
86 86 0.50
87 8 0.05
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.23
Consensus pattern (85 bp):
TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGAAGTAGTGGA
GCAGACAAAAGAAACACAGA
Found at i:15152573 original size:44 final size:42
Alignment explanation
Indices: 15152515--15152619 Score: 117
Period size: 44 Copynumber: 2.5 Consensus size: 42
15152505 GACAGAAAAA
* * *
15152515 AAAATC-A-ATCTTATCTCCCTGAAGTTGCAGTGGAGCTGATT
1 AAAATCAAGATCTTATCTCCCTGAAGTTACAGTAGAGCAGA-T
*
15152556 AAAATCACAGATCTTATCTCTCTGAAGTTACAGTAGAGCAGAT
1 AAAATCA-AGATCTTATCTCCCTGAAGTTACAGTAGAGCAGAT
* *
15152599 CACATCAAG-TCTTATCTCCCT
1 AAAATCAAGATCTTATCTCCCT
15152620 AAGCAGTAGC
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
41 17 0.31
42 2 0.04
43 7 0.13
44 28 0.52
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.30
Consensus pattern (42 bp):
AAAATCAAGATCTTATCTCCCTGAAGTTACAGTAGAGCAGAT
Found at i:15152617 original size:131 final size:128
Alignment explanation
Indices: 15152460--15152697 Score: 341
Period size: 128 Copynumber: 1.8 Consensus size: 128
15152450 AGCAGTAGTG
* * * * *
15152460 GAGCAGATCGCATCCAGTCTTATCTCCCTAAGTAGTAGTGGAGCAGACAGAAAAAAAAATCAATC
1 GAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGCGGAGCAGAC-G--AAAAAAACCAATC
* * * * *
15152525 TTATCTCCCTGAAGTTGCAGTGGAGCTGATTAAAATCACAGATCTTATCTCTCTGAAGTTACAGT
63 CTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAACCACAAATCTTATCTCTCTGAAGTTACAGT
15152590 A
128 A
*
15152591 GAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGCGGAGCAGACGAAAGAAACCAATCCTA
1 GAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGCGGAGCAGACGAAAAAAACCAATCCTA
*
15152656 TCTCCCTGAAGTTATAGTGGAGCGGATTAAAACCACAAATCT
66 TCTCCCTGAAGTTACAGTGGAGCGGATTAAAACCACAAATCT
15152698 CACCCCTATG
Statistics
Matches: 95, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
128 50 0.53
130 1 0.01
131 44 0.46
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.24
Consensus pattern (128 bp):
GAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGCGGAGCAGACGAAAAAAACCAATCCTA
TCTCCCTGAAGTTACAGTGGAGCGGATTAAAACCACAAATCTTATCTCTCTGAAGTTACAGTA
Found at i:15152718 original size:128 final size:130
Alignment explanation
Indices: 15152460--15152726 Score: 340
Period size: 128 Copynumber: 2.1 Consensus size: 130
15152450 AGCAGTAGTG
* * * * *
15152460 GAGCAGATCGCATCCAGTCTTATCTCCCTAAGTAGTAGTGGAGCAGACAGAAAAAAAAATCAATC
1 GAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGCGGAGCAGACAG-AAAAAAAACCAATC
* * * * * * * * *
15152525 TTATCTCCCTGAAGTTGCAGTGGAGCTGATTAAAATCACAGATCTTATCTCTCTGAAGTTACAGT
65 CTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAACCACAAATCTCACCCCTATGAAGTTACAGT
15152590 A
130 A
*
15152591 GAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGCGGAGCAGAC-G-AAAGAAACCAATCC
1 GAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGCGGAGCAGACAGAAAAAAAACCAATCC
* * *
15152654 TATCTCCCTGAAGTTATAGTGGAGCGGATTAAAACCACAAATCTCACCCCTATGGAGTTGCAGTA
66 TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAACCACAAATCTCACCCCTATGAAGTTACAGTA
*
15152719 GAGTAGAT
1 GAGCAGAT
15152727 TGAAGCTACA
Statistics
Matches: 117, Mismatches: 19, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
128 72 0.62
130 1 0.01
131 44 0.38
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.24
Consensus pattern (130 bp):
GAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGCGGAGCAGACAGAAAAAAAACCAATCC
TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAACCACAAATCTCACCCCTATGAAGTTACAGTA
Found at i:15154352 original size:45 final size:45
Alignment explanation
Indices: 15154293--15154383 Score: 112
Period size: 45 Copynumber: 2.0 Consensus size: 45
15154283 CTATATCACC
* * *
15154293 TTATTATTCTCCATATTATCATTTATATTGTTATTATT-CTCTTTG
1 TTATTATTCCCCATATTATCATTTATACTCTTATTATTGC-CTTTG
* * *
15154338 TTATTGTTCCCCATATTATTATTTGTACTCTTATTATTGCCTTTG
1 TTATTATTCCCCATATTATCATTTATACTCTTATTATTGCCTTTG
15154383 T
1 T
15154384 CATGCATGTT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
45 38 0.97
46 1 0.03
ACGTcount: A:0.20, C:0.15, G:0.07, T:0.58
Consensus pattern (45 bp):
TTATTATTCCCCATATTATCATTTATACTCTTATTATTGCCTTTG
Found at i:15154785 original size:126 final size:126
Alignment explanation
Indices: 15154597--15154932 Score: 525
Period size: 126 Copynumber: 2.7 Consensus size: 126
15154587 TCAAAAGGGT
**
15154597 AAAATTTCGAAAAT-AAGGCAATATTTTATATTTTAG-AAATTCGAGAAATTGTACCCTAACTTA
1 AAAATTTCGAAAATAAAGGCAATATTTCGTA-TTTAGAAAATTCGAGAAATTGTACCCTAACTTA
** *
15154660 CTGGGTCTCGATTTTCTCGTTAAACCTAAATAGAAAAATATCTTTTTAAATTTCCAAAAGTA
65 CTGGGTCTCGATTTTCTCGTTAAACCTAAATAGAAAAATATCCATTTAAATTTCCAAAAATA
15154722 AAAATTTCGAAAATAAAGGCAATATTTCGTATTTAGAAAATTCGAGAAATTGTACCCTAACTTAC
1 AAAATTTCGAAAATAAAGGCAATATTTCGTATTTAGAAAATTCGAGAAATTGTACCCTAACTTAC
*
15154787 TGGGTCTCGATTTTCTCGTTAAACCTAAATAGCAAAATATCCATTTAAATTTCCAAAAATA
66 TGGGTCTCGATTTTCTCGTTAAACCTAAATAGAAAAATATCCATTTAAATTTCCAAAAATA
* * *
15154848 AAAATTTTGAAAATAAAGGCAATATTTCGTATTTAGAAAATTCGAGAAAATCGTGCCCTAACTTA
1 AAAATTTCGAAAATAAAGGCAATATTTCGTATTTAGAAAATTCGAG-AAATTGTACCCTAACTTA
*
15154913 CTGAG-CTTCGATTTTTCTCG
65 CTGGGTC-TCGA-TTTTCTCG
15154933 CGTTGATCCT
Statistics
Matches: 196, Mismatches: 10, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
125 19 0.10
126 145 0.74
127 24 0.12
128 8 0.04
ACGTcount: A:0.39, C:0.15, G:0.12, T:0.34
Consensus pattern (126 bp):
AAAATTTCGAAAATAAAGGCAATATTTCGTATTTAGAAAATTCGAGAAATTGTACCCTAACTTAC
TGGGTCTCGATTTTCTCGTTAAACCTAAATAGAAAAATATCCATTTAAATTTCCAAAAATA
Found at i:15156355 original size:23 final size:23
Alignment explanation
Indices: 15156303--15156348 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
15156293 CGGAAGGGTG
*
15156303 GAAATTTAAAACTATATTTTTAT
1 GAAAATTAAAACTATATTTTTAT
15156326 GAAAATTAAAA-TATAATTTTTAT
1 GAAAATTAAAACTAT-ATTTTTAT
15156349 TATAATTTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 3 0.14
23 18 0.86
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.46
Consensus pattern (23 bp):
GAAAATTAAAACTATATTTTTAT
Found at i:15158233 original size:153 final size:151
Alignment explanation
Indices: 15157964--15158443 Score: 587
Period size: 153 Copynumber: 3.2 Consensus size: 151
15157954 TTTTTTATTG
* * **
15157964 AAAGTAATAAAATC-CGGTAAAAAAATACGAACAAAGGGCCGAAAT-AAGGGTTTTTTTAATTTA
1 AAAGTAATAAAATCTAGG-GAAAAAATACGAACAAAGGGCCGAAATAAAGTTTTTTTTTAATTTA
15158027 TTTAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAA
65 TTTAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAA
* *
15158092 ATTAGAAAATATTATATTT-TTT
130 ACTAGAAAATAGTAT-TTTGTTT
15158114 AAAAGTAATAAAATCTAGGGAAAAAATACGAACAAAGGGCCGAAATAATAGTTTTTTTTTAATTT
1 -AAAGTAATAAAATCTAGGGAAAAAATACGAACAAAGGGCCGAAATAA-AGTTTTTTTTTAATTT
* * *
15158179 ATTTAAAAAATACAGTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAA
64 ATTTAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAA
15158244 AACTAGAAAATAGTATTTTGTTT
129 AACTAGAAAATAGTATTTTGTTT
* * * *
15158267 AAAGTAATAAAAT-TTGGGGAAAAA-ACGAACGAAGGGCCGAAATAAGGTTTTTTTTTTAAAATT
1 AAAGTAATAAAATCTAGGGAAAAAATACGAACAAAGGGCCGAAATAAAG-TTTTTTTTT--AATT
** *
15158330 TCAATAAAAAAAACACACTAAATGAATACATTTCAAATATAATGTAC----------TAAAATAA
63 T--ATTTAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAA
15158385 TAAAACTAGAAAATAGTATTATT-TTT
126 TAAAACTAGAAAATAGTATT-TTGTTT
** *
15158411 AAAGTAATAAAATCCGGGGAAAAAATATGAACA
1 AAAGTAATAAAATCTAGGGAAAAAATACGAACA
15158444 TGGCTGAAAT
Statistics
Matches: 293, Mismatches: 24, Indels: 29
0.85 0.07 0.08
Matches are distributed among these distances:
144 44 0.15
145 10 0.03
146 5 0.02
149 1 0.00
150 29 0.10
151 49 0.17
152 24 0.08
153 93 0.32
154 38 0.13
ACGTcount: A:0.51, C:0.08, G:0.11, T:0.30
Consensus pattern (151 bp):
AAAGTAATAAAATCTAGGGAAAAAATACGAACAAAGGGCCGAAATAAAGTTTTTTTTTAATTTAT
TTAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAA
CTAGAAAATAGTATTTTGTTT
Found at i:15165142 original size:3 final size:3
Alignment explanation
Indices: 15165134--15165169 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
15165124 CAAAAGAAAT
15165134 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
15165170 CAAAAAGTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:15175748 original size:15 final size:15
Alignment explanation
Indices: 15175728--15175763 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
15175718 ATTATAGGTG
15175728 AAGTAAATTTTGGAT
1 AAGTAAATTTTGGAT
15175743 AAGTAAATTTTGGAT
1 AAGTAAATTTTGGAT
15175758 AAGTAA
1 AAGTAA
15175764 TTTAGCCGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.44, C:0.00, G:0.19, T:0.36
Consensus pattern (15 bp):
AAGTAAATTTTGGAT
Found at i:15175951 original size:21 final size:21
Alignment explanation
Indices: 15175926--15175973 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
15175916 GGATGATAAT
*
15175926 ATAAAAT-GAAGATTAATTTAA
1 ATAAAATGGAA-ATTAATTAAA
* *
15175947 GTAAATTGGAAATTAATTAAA
1 ATAAAATGGAAATTAATTAAA
15175968 ATAAAA
1 ATAAAA
15175974 CATGGTTTAT
Statistics
Matches: 21, Mismatches: 5, Indels: 2
0.75 0.18 0.07
Matches are distributed among these distances:
21 18 0.86
22 3 0.14
ACGTcount: A:0.58, C:0.00, G:0.10, T:0.31
Consensus pattern (21 bp):
ATAAAATGGAAATTAATTAAA
Found at i:15181893 original size:14 final size:15
Alignment explanation
Indices: 15181871--15181947 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
15181861 CAATCAAACA
15181871 CCAGAAAAT-ATTTT
1 CCAGAAAATCATTTT
*
15181885 CCAGTAAATCATTTT
1 CCAGAAAATCATTTT
*
15181900 ACAGAAAAGTAAAACATTTT
1 CCAGAAAA-T----CATTTT
15181920 CCAG-AAATCATTTT
1 CCAGAAAATCATTTT
* *
15181934 ACGGAAAAT-ATTTT
1 CCAGAAAATCATTTT
15181948 ACTGGCAATC
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 21 0.42
15 15 0.30
16 1 0.02
18 1 0.02
19 3 0.06
20 9 0.18
ACGTcount: A:0.43, C:0.14, G:0.09, T:0.34
Consensus pattern (15 bp):
CCAGAAAATCATTTT
Found at i:15181912 original size:20 final size:20
Alignment explanation
Indices: 15181887--15181926 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
15181877 AATATTTTCC
*
15181887 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
15181907 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
15181927 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:15181932 original size:34 final size:35
Alignment explanation
Indices: 15181875--15181941 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
15181865 CAAACACCAG
*
15181875 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
15181910 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
15181942 TATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.46, C:0.13, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:15186361 original size:83 final size:83
Alignment explanation
Indices: 15186234--15186391 Score: 228
Period size: 83 Copynumber: 1.9 Consensus size: 83
15186224 TACCTGAATC
* * *
15186234 GCTCGAGGCGACTGCAAACCTTTCAAGAGGTCGATAAATGATCGAATTACTCCATAGGGTAAAAT
1 GCTCGAGGCGACTGCAAACCTTTCAAGAGGTCAATAAATGATCGAATTACCCCACAGGGTAAAAT
*
15186299 GACCAAATTACCTAAGTT
66 CACCAAATTACCTAAGTT
* * *
15186317 GCTCGAGGCGACTGCAGATCTTTTC-AGAGGTCAATAAATGATCGAATTACCCCACATGGTAAAA
1 GCTCGAGGCGACTGCA-AACCTTTCAAGAGGTCAATAAATGATCGAATTACCCCACAGGGTAAAA
*
15186381 TCACCGAATTA
65 TCACCAAATTA
15186392 ACCCCATAGG
Statistics
Matches: 66, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
83 60 0.91
84 6 0.09
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.24
Consensus pattern (83 bp):
GCTCGAGGCGACTGCAAACCTTTCAAGAGGTCAATAAATGATCGAATTACCCCACAGGGTAAAAT
CACCAAATTACCTAAGTT
Found at i:15186404 original size:27 final size:27
Alignment explanation
Indices: 15186352--15186572 Score: 187
Period size: 27 Copynumber: 8.3 Consensus size: 27
15186342 AGAGGTCAAT
* * *
15186352 AAATGATCG-AATTACCCCACATGGTA
1 AAATGACCGAAATAACCCCACAGGGTA
* * *
15186378 AAATCACCGAATTAACCCCATAGGGTA
1 AAATGACCGAAATAACCCCACAGGGTA
*
15186405 AAATGACCG-AATTACCCTCACAGGGTA
1 AAATGACCGAAATAACCC-CACAGGGTA
* * * *
15186432 AAATGACTGAATTACCCCCACAGGATA
1 AAATGACCGAAATAACCCCACAGGGTA
* * *
15186459 AAATGATCAAAAT-ACCCCACAGGTTA
1 AAATGACCGAAATAACCCCACAGGGTA
* * * *
15186485 AAATAACCGAAATATCCCTATAGGGTA
1 AAATGACCGAAATAACCCCACAGGGTA
* * *
15186512 AAATGACCGAAATATCCCTATAGGGTA
1 AAATGACCGAAATAACCCCACAGGGTA
* * **
15186539 AAATAACCAAAATAACCCCATTGGGTA
1 AAATGACCGAAATAACCCCACAGGGTA
15186566 AAATGAC
1 AAATGAC
15186573 TGTTATGACC
Statistics
Matches: 156, Mismatches: 35, Indels: 7
0.79 0.18 0.04
Matches are distributed among these distances:
26 34 0.22
27 117 0.75
28 5 0.03
ACGTcount: A:0.43, C:0.23, G:0.15, T:0.20
Consensus pattern (27 bp):
AAATGACCGAAATAACCCCACAGGGTA
Found at i:15186552 original size:54 final size:53
Alignment explanation
Indices: 15186352--15186572 Score: 226
Period size: 54 Copynumber: 4.1 Consensus size: 53
15186342 AGAGGTCAAT
* * * * * *
15186352 AAATGATCGAATTACCCCACATGGTAAAATCACCGAATTAACCCCATAGGGTA
1 AAATGACCGAAATACCCTACAGGGTAAAATAACCGAAATAACCCCATAGGGTA
* * * * * * *
15186405 AAATGACCGAATTACCCTCACAGGGTAAAATGACTGAATTACCCCCACAGGATA
1 AAATGACCGAAATACCCT-ACAGGGTAAAATAACCGAAATAACCCCATAGGGTA
* * * * * *
15186459 AAATGATCAAAATACCCCACAGGTTAAAATAACCGAAATATCCCTATAGGGTA
1 AAATGACCGAAATACCCTACAGGGTAAAATAACCGAAATAACCCCATAGGGTA
* * *
15186512 AAATGACCGAAATATCCCTATAGGGTAAAATAACCAAAATAACCCCATTGGGTA
1 AAATGACCGAAATA-CCCTACAGGGTAAAATAACCGAAATAACCCCATAGGGTA
15186566 AAATGAC
1 AAATGAC
15186573 TGTTATGACC
Statistics
Matches: 137, Mismatches: 29, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
53 55 0.40
54 82 0.60
ACGTcount: A:0.43, C:0.23, G:0.15, T:0.20
Consensus pattern (53 bp):
AAATGACCGAAATACCCTACAGGGTAAAATAACCGAAATAACCCCATAGGGTA
Found at i:15186571 original size:107 final size:107
Alignment explanation
Indices: 15186352--15186558 Score: 265
Period size: 107 Copynumber: 1.9 Consensus size: 107
15186342 AGAGGTCAAT
* * * * *
15186352 AAATGATCGAATTACCCCACATGGTAAAATCACCGAATTAACCCCATAGGGTAAAATGACCGAAT
1 AAATGATCAAAATACCCCACATGGTAAAATAACCGAAATAACCCCATAGGGTAAAATGACCGAAA
* ** * *
15186417 TACCCTCACAGGGTAAAATGACTGAATTACCCCCACAGGATA
66 TACCCTCACAGGGTAAAATAACCAAAATAACCCCACAGGATA
* *
15186459 AAATGATCAAAATACCCCACA-GGTTAAAATAACCGAAATATCCCTATAGGGTAAAATGACCGAA
1 AAATGATCAAAATACCCCACATGG-TAAAATAACCGAAATAACCCCATAGGGTAAAATGACCGAA
*
15186523 ATATCCCT-ATAGGGTAAAATAACCAAAATAACCCCA
65 ATA-CCCTCACAGGGTAAAATAACCAAAATAACCCCA
15186559 TTGGGTAAAA
Statistics
Matches: 85, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
106 2 0.02
107 79 0.93
108 4 0.05
ACGTcount: A:0.43, C:0.24, G:0.14, T:0.19
Consensus pattern (107 bp):
AAATGATCAAAATACCCCACATGGTAAAATAACCGAAATAACCCCATAGGGTAAAATGACCGAAA
TACCCTCACAGGGTAAAATAACCAAAATAACCCCACAGGATA
Found at i:15186815 original size:26 final size:26
Alignment explanation
Indices: 15186779--15186859 Score: 101
Period size: 26 Copynumber: 3.1 Consensus size: 26
15186769 TTTTCCACAT
*
15186779 ATACTGTTACTGGCAGCTTTGCTGCG
1 ATACTGATACTGGCAGCTTTGCTGCG
*
15186805 ATACTGATACTGGCAGCTCTGCTGCG
1 ATACTGATACTGGCAGCTTTGCTGCG
* * *
15186831 ATGCT-ATTACTAGCAACTTTGCTGCG
1 ATACTGA-TACTGGCAGCTTTGCTGCG
15186857 ATA
1 ATA
15186860 TTGGTGTGTT
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
25 1 0.02
26 46 0.98
ACGTcount: A:0.21, C:0.23, G:0.23, T:0.32
Consensus pattern (26 bp):
ATACTGATACTGGCAGCTTTGCTGCG
Found at i:15186966 original size:28 final size:27
Alignment explanation
Indices: 15186934--15186987 Score: 90
Period size: 28 Copynumber: 2.0 Consensus size: 27
15186924 TGTTGGCTGG
15186934 ATTGGGCTAAGGCCCACACTGTTACTGT
1 ATTGGGCTAAGGCCCACACTG-TACTGT
*
15186962 ATTGGGCTAAGGCCCACATTGTACTG
1 ATTGGGCTAAGGCCCACACTGTACTG
15186988 GTACTGAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
27 5 0.20
28 20 0.80
ACGTcount: A:0.22, C:0.24, G:0.26, T:0.28
Consensus pattern (27 bp):
ATTGGGCTAAGGCCCACACTGTACTGT
Found at i:15189285 original size:25 final size:25
Alignment explanation
Indices: 15189257--15189305 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
15189247 TAAGCTTTCC
*
15189257 GATTTACAGCTCGTGA-GAGCATACT
1 GATTCACAGCTCGT-ATGAGCATACT
*
15189282 GATTCATAGCTCGTATGAGCATAC
1 GATTCACAGCTCGTATGAGCATAC
15189306 ATAAATATGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 1 0.05
25 20 0.95
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (25 bp):
GATTCACAGCTCGTATGAGCATACT
Found at i:15204453 original size:11 final size:11
Alignment explanation
Indices: 15204439--15204486 Score: 60
Period size: 11 Copynumber: 4.4 Consensus size: 11
15204429 ATATACAATT
*
15204439 AATAACAACAA
1 AATAATAACAA
*
15204450 AATATTAACAA
1 AATAATAACAA
*
15204461 TATAATAACAA
1 AATAATAACAA
*
15204472 AATGATAACAA
1 AATAATAACAA
15204483 AATA
1 AATA
15204487 GCAACGAAAT
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
11 30 1.00
ACGTcount: A:0.67, C:0.10, G:0.02, T:0.21
Consensus pattern (11 bp):
AATAATAACAA
Found at i:15204461 original size:31 final size:32
Alignment explanation
Indices: 15204402--15204464 Score: 85
Period size: 31 Copynumber: 2.0 Consensus size: 32
15204392 ATAGTAGCAA
*
15204402 AATTAATAACGAAACAAAAGTTATACAATATAC
1 AATTAATAAC-AAACAAAAATTATACAATATAC
15204435 AATTAATAAC-AACAAAATATTA-ACAATATA
1 AATTAATAACAAACAAAA-ATTATACAATATA
15204465 ATAACAAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
31 15 0.54
32 3 0.11
33 10 0.36
ACGTcount: A:0.60, C:0.11, G:0.03, T:0.25
Consensus pattern (32 bp):
AATTAATAACAAACAAAAATTATACAATATAC
Found at i:15204472 original size:22 final size:22
Alignment explanation
Indices: 15204440--15204496 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
15204430 TATACAATTA
15204440 ATAACAACAAAAT-ATTAACAAT
1 ATAACAACAAAATGA-TAACAAT
* *
15204462 ATAATAACAAAATGATAACAAA
1 ATAACAACAAAATGATAACAAT
* *
15204484 ATAGCAACGAAAT
1 ATAACAACAAAAT
15204497 ATTTGACTTG
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
22 28 0.97
23 1 0.03
ACGTcount: A:0.63, C:0.12, G:0.05, T:0.19
Consensus pattern (22 bp):
ATAACAACAAAATGATAACAAT
Found at i:15204952 original size:25 final size:25
Alignment explanation
Indices: 15204907--15204957 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
15204897 GGTTAATTAG
* *
15204907 AGTTTAAGTGGGAAACTAAAAACCA
1 AGTTTAACTGGGAAACGAAAAACCA
*
15204932 AGTTTAACTGGGAGAA-GAAAAGCCA
1 AGTTTAACTGGGA-AACGAAAAACCA
15204957 A
1 A
15204958 AATAAACTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 20 0.91
26 2 0.09
ACGTcount: A:0.47, C:0.12, G:0.24, T:0.18
Consensus pattern (25 bp):
AGTTTAACTGGGAAACGAAAAACCA
Found at i:15205266 original size:25 final size:23
Alignment explanation
Indices: 15205222--15205272 Score: 66
Period size: 25 Copynumber: 2.1 Consensus size: 23
15205212 TAAAAGCTGA
* *
15205222 AAATAAATTAATAAAAATTAGTT
1 AAATAAATTAAGAAAAATTAATT
15205245 AAATAAATCTGAAGAAAAATTAATT
1 AAATAAAT-T-AAGAAAAATTAATT
15205270 AAA
1 AAA
15205273 CTAAGCTCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 8 0.33
24 1 0.04
25 15 0.62
ACGTcount: A:0.63, C:0.02, G:0.06, T:0.29
Consensus pattern (23 bp):
AAATAAATTAAGAAAAATTAATT
Found at i:15209220 original size:23 final size:23
Alignment explanation
Indices: 15209194--15209723 Score: 227
Period size: 22 Copynumber: 22.4 Consensus size: 23
15209184 CAACTCTGTT
* *
15209194 TTGGACAGCAATTATTCAACAAA
1 TTGGACAGCAATTATACATCAAA
*
15209217 TTGGACAGCAATAATATGC-TCAAA
1 TTGGACAGCAAT--TATACATCAAA
*
15209241 ATGGACAGC-ATTATACATCAAA
1 TTGGACAGCAATTATACATCAAA
* * *
15209263 TTAGACAGCTTAAATATAC-CCAAAA
1 TTGGACAGC--AATTATACATC-AAA
* *
15209288 TTGGACAGCAGCTTAAATATACTCACAA
1 TTGGACAGCA-ATT--ATACA-TCA-AA
15209316 TTGGACAGC-ATTATACATCAAA
1 TTGGACAGCAATTATACATCAAA
* *
15209338 TTAGACAGCTTAAATATAC-TCACAA
1 TTGGACAGC--AATTATACATCA-AA
* *
15209363 TTGGACAGC-ATTATATATTAAA
1 TTGGACAGCAATTATACATCAAA
* *
15209385 ATGGACAGC-ATCAATACACTCAAAA
1 TTGGACAGCAAT-TATACA-TC-AAA
* *
15209410 TTGGACAAC-ATTATACATTAAA
1 TTGGACAGCAATTATACATCAAA
* *
15209432 ATGGACAGC-ATCAGTACACTCAAAA
1 TTGGACAGCAATTA-TACA-TC-AAA
* * *
15209457 TTGGACAAC-ATTACACATTAAA
1 TTGGACAGCAATTATACATCAAA
* *
15209479 ATGGACAGC-ATCAATACACTCAAAA
1 TTGGACAGCAAT-TATACA-TC-AAA
* *
15209504 TTGGACAGC-ATTACACATTAAA
1 TTGGACAGCAATTATACATCAAA
* *
15209526 ATGGACAGC-ATCAATACACTCAAAA
1 TTGGACAGCAAT-TATACA-TC-AAA
* * *
15209551 TTGGTCAG-TATTATACATTAAA
1 TTGGACAGCAATTATACATCAAA
* *
15209573 ATGGACAGC-ATCAATACACTCAAAA
1 TTGGACAGCAAT-TATACA-TC-AAA
* *
15209598 TTGAACAGC-ATTATACATTAAA
1 TTGGACAGCAATTATACATCAAA
* *
15209620 ATGGACAGC-ATCAATACACTCAAAA
1 TTGGACAGCAAT-TATACA-TC-AAA
*
15209645 TTGGACAGC-ATTATACATTAAA
1 TTGGACAGCAATTATACATCAAA
* * *
15209667 ATGGGCAGC-ATCAATACACTCAAAA
1 TTGGACAGCAAT-TATACA-TC-AAA
*
15209692 TTGGACAGC-ATTATACATTAAA
1 TTGGACAGCAATTATACATCAAA
*
15209714 ATGGACAGCA
1 TTGGACAGCA
15209724 TCAATACACT
Statistics
Matches: 386, Mismatches: 79, Indels: 84
0.70 0.14 0.15
Matches are distributed among these distances:
21 4 0.01
22 123 0.32
23 58 0.15
24 60 0.16
25 123 0.32
26 5 0.01
27 1 0.00
28 12 0.03
ACGTcount: A:0.44, C:0.19, G:0.13, T:0.24
Consensus pattern (23 bp):
TTGGACAGCAATTATACATCAAA
Found at i:15209293 original size:47 final size:47
Alignment explanation
Indices: 15209194--15209297 Score: 122
Period size: 46 Copynumber: 2.2 Consensus size: 47
15209184 CAACTCTGTT
* * * *
15209194 TTGGACAGCAATTATTCAACAAATTGGACAGCAATAATATGCTCAAAA
1 TTGGACAGC-ATTATACAACAAATTAGACAGCAATAATATACCCAAAA
* *
15209242 -TGGACAGCATTATACATCAAATTAGACAGC-TTAAATATACCCAAAA
1 TTGGACAGCATTATACAACAAATTAGACAGCAAT-AATATACCCAAAA
15209288 TTGGACAGCA
1 TTGGACAGCA
15209298 GCTTAAATAT
Statistics
Matches: 48, Mismatches: 6, Indels: 5
0.81 0.10 0.08
Matches are distributed among these distances:
45 1 0.02
46 30 0.62
47 17 0.35
ACGTcount: A:0.43, C:0.18, G:0.14, T:0.24
Consensus pattern (47 bp):
TTGGACAGCATTATACAACAAATTAGACAGCAATAATATACCCAAAA
Found at i:15209306 original size:28 final size:28
Alignment explanation
Indices: 15209268--15209325 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 28
15209258 TCAAATTAGA
15209268 CAGCTTAAATATACCCAAAATTGGACAG
1 CAGCTTAAATATACCCAAAATTGGACAG
* *
15209296 CAGCTTAAATATACTCACAATTGGACAG
1 CAGCTTAAATATACCCAAAATTGGACAG
15209324 CA
1 CA
15209326 TTATACATCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.41, C:0.22, G:0.14, T:0.22
Consensus pattern (28 bp):
CAGCTTAAATATACCCAAAATTGGACAG
Found at i:15209329 original size:75 final size:71
Alignment explanation
Indices: 15209214--15209654 Score: 255
Period size: 69 Copynumber: 6.2 Consensus size: 71
15209204 ATTATTCAAC
*
15209214 AAATTGGACAGCAATAATATGCTCAAAATGGACAGCATTATACATCAAATTAGACAGCTTAAATA
1 AAATTGGACAGCAATAATATACTCAAAATGGACAGCATTATACATCAAATTAGACAGCTTAAATA
15209279 TACCCA
66 TACCCA
* *
15209285 AAATTGGACAGCAGCTTAAATATACTCACAATTGGACAGCATTATACATCAAATTAGACAGCTTA
1 AAATTGGACAGCA--AT-AATATACTCA-AAATGGACAGCATTATACATCAAATTAGACAGCTTA
*
15209350 AATATACTCA
62 AATATACCCA
* * * * * *
15209360 CAATTGGACAGC-ATTATATA-TTAAAATGGACAGCATCAATACACTCAAAATTGGACAAC---A
1 AAATTGGACAGCAATAATATACTCAAAATGGACAGCAT-TATACA-TC-AAATTAGACAGCTTAA
* **
15209420 TTATACATTA
63 ATATAC-CCA
* * * * * * * * *
15209430 AAA-TGGACAGC-ATCAGTACACTCAAAATTGGACAACATTACACATTAAAATGGACAGCATCAA
1 AAATTGGACAGCAAT-AATATACTCAAAA-TGGACAGCATTATACATCAAATTAGACAGCTTAAA
* *
15209493 TACACTCA
64 TATACCCA
* * * * *
15209501 AAATTGGACAGC-AT--TACACATTAAAATGGACAGCATCAATACACTCAAAATTGGTCAG--T-
1 AAATTGGACAGCAATAATATAC-TCAAAATGGACAGCAT-TATACA-TC-AAATTAGACAGCTTA
* **
15209560 ATTATACATTA
62 AATATAC-CCA
* * * * * * *
15209571 AAA-TGGACAGC-ATCAATACACTCAAAATTGAACAGCATTATACATTAAAATGGACAGCATCAA
1 AAATTGGACAGCAAT-AATATACTCAAAA-TGGACAGCATTATACATCAAATTAGACAGCTTAAA
* *
15209634 TACACTCA
64 TATACCCA
15209642 AAATTGGACAGCA
1 AAATTGGACAGCA
15209655 TTATACATTA
Statistics
Matches: 294, Mismatches: 47, Indels: 56
0.74 0.12 0.14
Matches are distributed among these distances:
69 76 0.26
70 31 0.11
71 51 0.17
72 71 0.24
73 1 0.00
74 9 0.03
75 55 0.19
ACGTcount: A:0.44, C:0.19, G:0.12, T:0.24
Consensus pattern (71 bp):
AAATTGGACAGCAATAATATACTCAAAATGGACAGCATTATACATCAAATTAGACAGCTTAAATA
TACCCA
Found at i:15209358 original size:47 final size:47
Alignment explanation
Indices: 15209303--15209744 Score: 706
Period size: 47 Copynumber: 9.4 Consensus size: 47
15209293 CAGCAGCTTA
* * * * * * *
15209303 AATATACTCACAATTGGACAGCATTATACATCAAATTAGACAGCTTA
1 AATACACTCAAAATTGGACAGCATTATACATTAAAATGGACAGCATC
* * *
15209350 AATATACTCACAATTGGACAGCATTATATATTAAAATGGACAGCATC
1 AATACACTCAAAATTGGACAGCATTATACATTAAAATGGACAGCATC
*
15209397 AATACACTCAAAATTGGACAACATTATACATTAAAATGGACAGCATC
1 AATACACTCAAAATTGGACAGCATTATACATTAAAATGGACAGCATC
* * *
15209444 AGTACACTCAAAATTGGACAACATTACACATTAAAATGGACAGCATC
1 AATACACTCAAAATTGGACAGCATTATACATTAAAATGGACAGCATC
*
15209491 AATACACTCAAAATTGGACAGCATTACACATTAAAATGGACAGCATC
1 AATACACTCAAAATTGGACAGCATTATACATTAAAATGGACAGCATC
* *
15209538 AATACACTCAAAATTGGTCAGTATTATACATTAAAATGGACAGCATC
1 AATACACTCAAAATTGGACAGCATTATACATTAAAATGGACAGCATC
*
15209585 AATACACTCAAAATTGAACAGCATTATACATTAAAATGGACAGCATC
1 AATACACTCAAAATTGGACAGCATTATACATTAAAATGGACAGCATC
*
15209632 AATACACTCAAAATTGGACAGCATTATACATTAAAATGGGCAGCATC
1 AATACACTCAAAATTGGACAGCATTATACATTAAAATGGACAGCATC
15209679 AATACACTCAAAATTGGACAGCATTATACATTAAAATGGACAGCATC
1 AATACACTCAAAATTGGACAGCATTATACATTAAAATGGACAGCATC
15209726 AATACACTCAAAA-TGGACA
1 AATACACTCAAAATTGGACA
15209745 TCAAATTTGG
Statistics
Matches: 372, Mismatches: 23, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
46 6 0.02
47 366 0.98
ACGTcount: A:0.45, C:0.19, G:0.12, T:0.24
Consensus pattern (47 bp):
AATACACTCAAAATTGGACAGCATTATACATTAAAATGGACAGCATC
Found at i:15210763 original size:28 final size:28
Alignment explanation
Indices: 15210731--15210828 Score: 110
Period size: 28 Copynumber: 3.5 Consensus size: 28
15210721 TTAATAAGTA
*
15210731 CGCACACTTAGTGC-TTAATAATCAAACT
1 CGCACACTTAGTGCATT-ATAATTAAACT
* *** *
15210759 CGCACACTTAGTGCGTTACCCTTATACT
1 CGCACACTTAGTGCATTATAATTAAACT
15210787 CGCACACTTAGTGCATT-TCAATTAAACT
1 CGCACACTTAGTGCATTAT-AATTAAACT
15210815 CGCACACTTAGTGC
1 CGCACACTTAGTGC
15210829 TAATCTCATT
Statistics
Matches: 58, Mismatches: 10, Indels: 4
0.81 0.14 0.06
Matches are distributed among these distances:
28 56 0.97
29 2 0.03
ACGTcount: A:0.29, C:0.29, G:0.13, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCATTATAATTAAACT
Found at i:15219002 original size:22 final size:21
Alignment explanation
Indices: 15218966--15219057 Score: 73
Period size: 22 Copynumber: 4.2 Consensus size: 21
15218956 TGCTAGACCT
*
15218966 ATTT-TTTTAATAAATACCAAAA
1 ATTTATTTTAA-AAATA-AAAAA
15218988 ATTTATTTTAAAAATTAAAAAA
1 ATTTATTTTAAAAA-TAAAAAA
** *
15219010 AAGTATTTTAAAAATATTTTAAAA
1 ATTTATTTTAAAAATA---AAAAA
15219034 A--TATTTTAAAAATAAAAAA
1 ATTTATTTTAAAAATAAAAAA
15219053 ATTTA
1 ATTTA
15219058 AAAATAAATA
Statistics
Matches: 58, Mismatches: 5, Indels: 15
0.74 0.06 0.19
Matches are distributed among these distances:
19 5 0.09
21 4 0.07
22 36 0.62
23 8 0.14
24 5 0.09
ACGTcount: A:0.57, C:0.02, G:0.01, T:0.40
Consensus pattern (21 bp):
ATTTATTTTAAAAATAAAAAA
Found at i:15219022 original size:11 final size:11
Alignment explanation
Indices: 15219007--15219047 Score: 73
Period size: 11 Copynumber: 3.6 Consensus size: 11
15218997 AAAAATTAAA
15219007 AAAAAGTATTTT
1 AAAAA-TATTTT
15219019 AAAAATATTTT
1 AAAAATATTTT
15219030 AAAAATATTTT
1 AAAAATATTTT
15219041 AAAAATA
1 AAAAATA
15219048 AAAAAATTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
11 24 0.83
12 5 0.17
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:15219072 original size:16 final size:16
Alignment explanation
Indices: 15219032--15219073 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
15219022 AATATTTTAA
15219032 AAATAT-TTTAAAAAT
1 AAATATATTTAAAAAT
* *
15219047 AAAAAAATTTAAAAAT
1 AAATATATTTAAAAAT
15219063 AAATATATTTA
1 AAATATATTTA
15219074 TTATATCGGG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
15 4 0.18
16 18 0.82
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (16 bp):
AAATATATTTAAAAAT
Found at i:15220768 original size:107 final size:107
Alignment explanation
Indices: 15220603--15220904 Score: 433
Period size: 107 Copynumber: 2.8 Consensus size: 107
15220593 GATATTTGGT
* * * *
15220603 TATTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTCCTCAATTTTCCAAACAC
1 TATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACATTTCCTCGATTTTCCAAACGC
* *
15220668 GAAGTATTGCCTTATTTTAAGAGTTTAAAAAAGATATTTAAC
66 GAAATATTGCCTTATTTTAAAAGTTTAAAAAAGATATTTAAC
* * * * * *
15220710 TATTTGGTCAAACGAGAAGTCGAAAACCAACATGTTAGAGCACATTTCCTCGATTTTCCAAACGC
1 TATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACATTTCCTCGATTTTCCAAACGC
* * *
15220775 GAAATATTGTCTTATTTTAAAAGTTTAAAAAGGATATTTGAC
66 GAAATATTGCCTTATTTTAAAAGTTTAAAAAAGATATTTAAC
* *
15220817 TATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACATTTTCTTGATTTTCCAAACGC
1 TATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACATTTCCTCGATTTTCCAAACGC
*
15220882 AAAATATTGCCTTATTTATAAAA
66 GAAATATTGCCTTATTT-TAAAA
15220905 ACTTTCCGTT
Statistics
Matches: 169, Mismatches: 25, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
107 164 0.97
108 5 0.03
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (107 bp):
TATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACATTTCCTCGATTTTCCAAACGC
GAAATATTGCCTTATTTTAAAAGTTTAAAAAAGATATTTAAC
Found at i:15221360 original size:22 final size:23
Alignment explanation
Indices: 15221300--15221360 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 23
15221290 AAATTGTAAT
*
15221300 AATAT-AAGAATATATGTATGTG
1 AATATAAAGAATATATGTATGAG
* * *
15221322 AATTATAAAAAAAATAT-TTTGAG
1 AA-TATAAAGAATATATGTATGAG
15221345 AATATAAAGAATATAT
1 AATATAAAGAATATAT
15221361 ATAAGTATGT
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
22 14 0.45
23 9 0.29
24 8 0.26
ACGTcount: A:0.54, C:0.00, G:0.11, T:0.34
Consensus pattern (23 bp):
AATATAAAGAATATATGTATGAG
Found at i:15225709 original size:2 final size:2
Alignment explanation
Indices: 15225702--15225727 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
15225692 ATTGTCAAGG
15225702 TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC
15225728 GCACTCTTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:15227918 original size:20 final size:20
Alignment explanation
Indices: 15227893--15227933 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
15227883 CTTCGGTAGT
*
15227893 ACTTTGGACGACAATAGAAA
1 ACTTTGGACAACAATAGAAA
15227913 ACTTTGGACAACAATAGAAA
1 ACTTTGGACAACAATAGAAA
15227933 A
1 A
15227934 TTTATTCGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.20
Consensus pattern (20 bp):
ACTTTGGACAACAATAGAAA
Found at i:15228634 original size:65 final size:65
Alignment explanation
Indices: 15228534--15228655 Score: 226
Period size: 65 Copynumber: 1.9 Consensus size: 65
15228524 GACATTAAAT
* *
15228534 GATAGAAAGTAACGTGATCACGAGTCATTTGTCTAGGAAAAATGATTTAATTACTATCATTACAC
1 GATAGAAAGTAACGTGATCACGAGTCATTTATCTAGGAAAAATGATGTAATTACTATCATTACAC
15228599 GATAGAAAGTAACGTGATCACGAGTCATTTATCTAGGAAAAATGATGTAATTACTAT
1 GATAGAAAGTAACGTGATCACGAGTCATTTATCTAGGAAAAATGATGTAATTACTAT
15228656 TTTTTAGTAA
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
65 55 1.00
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.30
Consensus pattern (65 bp):
GATAGAAAGTAACGTGATCACGAGTCATTTATCTAGGAAAAATGATGTAATTACTATCATTACAC
Found at i:15230989 original size:23 final size:23
Alignment explanation
Indices: 15230963--15231033 Score: 60
Period size: 23 Copynumber: 3.1 Consensus size: 23
15230953 GATGCCATAG
15230963 CATCTTTTAGCTATGGTCTTACT
1 CATCTTTTAGCTATGGTCTTACT
* * *
15230986 CATC-CTT-G-TCATGATGTCATA-G
1 CATCTTTTAGCT-ATG--GTCTTACT
15231008 CATCTTTTAGCTATGGTCTTACT
1 CATCTTTTAGCTATGGTCTTACT
15231031 CAT
1 CAT
15231034 TTCAAGCGTA
Statistics
Matches: 35, Mismatches: 6, Indels: 14
0.64 0.11 0.25
Matches are distributed among these distances:
20 1 0.03
21 4 0.11
22 11 0.31
23 14 0.40
24 4 0.11
25 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.14, T:0.44
Consensus pattern (23 bp):
CATCTTTTAGCTATGGTCTTACT
Found at i:15231007 original size:45 final size:45
Alignment explanation
Indices: 15230905--15231033 Score: 163
Period size: 45 Copynumber: 2.9 Consensus size: 45
15230895 TTCTGTTTAC
* * * *
15230905 CATGATGTCATATCAT-TTTTCAGCCATGGTCTTACTAATTTATAT
1 CATGATGTCATAGCATCTTTT-AGCTATGGTCTTACTCATCTATAT
* * *
15230950 CACGATGCCATAGCATCTTTTAGCTATGGTCTTACTCATCCT-TGT
1 CATGATGTCATAGCATCTTTTAGCTATGGTCTTACTCAT-CTATAT
15230995 CATGATGTCATAGCATCTTTTAGCTATGGTCTTACTCAT
1 CATGATGTCATAGCATCTTTTAGCTATGGTCTTACTCAT
15231034 TTCAAGCGTA
Statistics
Matches: 73, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
45 68 0.93
46 5 0.07
ACGTcount: A:0.23, C:0.22, G:0.14, T:0.41
Consensus pattern (45 bp):
CATGATGTCATAGCATCTTTTAGCTATGGTCTTACTCATCTATAT
Found at i:15233272 original size:20 final size:20
Alignment explanation
Indices: 15233199--15233273 Score: 64
Period size: 20 Copynumber: 3.7 Consensus size: 20
15233189 TGTCTTTCTA
*
15233199 TTTAAATCAATT-ATGTTTCTG
1 TTTAAATCGATTCAT-TTT-TG
*
15233220 TTTGAATCGATTCATTTTTG
1 TTTAAATCGATTCATTTTTG
* *
15233240 TTTAAACCAATTC-TTTGTTG
1 TTTAAATCGATTCATTT-TTG
*
15233260 TTTAATTCGATTCA
1 TTTAAATCGATTCA
15233274 AACTCCAACA
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
19 3 0.07
20 25 0.58
21 13 0.30
22 2 0.05
ACGTcount: A:0.25, C:0.12, G:0.11, T:0.52
Consensus pattern (20 bp):
TTTAAATCGATTCATTTTTG
Found at i:15241696 original size:43 final size:44
Alignment explanation
Indices: 15241636--15241722 Score: 124
Period size: 44 Copynumber: 2.0 Consensus size: 44
15241626 AATCTGATTG
*
15241636 TTGTTTTATCTATTTTC-TGATTGATGCAAATATTGTTGATGTA
1 TTGTTTTATCTATTTTCTTGATTGATGCAAATATTCTTGATGTA
* *
15241679 TTGTTTTGTTCTA-TTTCTTGATTGATGCAAATTTTCTTGATGTA
1 TTGTTTT-ATCTATTTTCTTGATTGATGCAAATATTCTTGATGTA
15241723 GACTGATCAC
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
43 11 0.28
44 28 0.72
ACGTcount: A:0.21, C:0.08, G:0.16, T:0.55
Consensus pattern (44 bp):
TTGTTTTATCTATTTTCTTGATTGATGCAAATATTCTTGATGTA
Found at i:15243917 original size:3 final size:3
Alignment explanation
Indices: 15243909--15243943 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
15243899 TTATAAATGT
15243909 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
15243944 GTATGTAGTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.31, G:0.00, T:0.34
Consensus pattern (3 bp):
ATC
Found at i:15245293 original size:2 final size:2
Alignment explanation
Indices: 15245282--15245318 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
15245272 ATCAGTGACA
15245282 AG AG -G AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
15245319 GAAACTGGAT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
AG
Found at i:15267099 original size:14 final size:14
Alignment explanation
Indices: 15267077--15267127 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
15267067 AAATTATTAT
* *
15267077 TTAATTAATTGAAA
1 TTAAATAATAGAAA
15267091 TTAAATAATAGAAA
1 TTAAATAATAGAAA
* *
15267105 TTCAA-AGTAGAAA
1 TTAAATAATAGAAA
15267118 TTAAACTAAT
1 TTAAA-TAAT
15267128 TAGTCATCAC
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
13 11 0.38
14 16 0.55
15 2 0.07
ACGTcount: A:0.55, C:0.04, G:0.08, T:0.33
Consensus pattern (14 bp):
TTAAATAATAGAAA
Found at i:15272760 original size:18 final size:17
Alignment explanation
Indices: 15272727--15272765 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
15272717 TTGTATAAAT
15272727 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
15272745 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
15272762 TGTG
1 TGTG
15272766 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:15273022 original size:23 final size:23
Alignment explanation
Indices: 15272991--15273088 Score: 144
Period size: 23 Copynumber: 4.3 Consensus size: 23
15272981 AGTGTTATTG
*
15272991 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGACTACAT
* *
15273014 TTCAGTGGTAGCTTTGACTACAT
1 ATCAGTGGTAGCTTCGACTACAT
* *
15273037 -CCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGACTACAT
15273059 ATCAGTGGTAGCTTCGACTACAT
1 ATCAGTGGTAGCTTCGACTACAT
15273082 ATCAGTG
1 ATCAGTG
15273089 TGGCACTTAT
Statistics
Matches: 66, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
22 19 0.29
23 47 0.71
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGACTACAT
Found at i:15273057 original size:45 final size:45
Alignment explanation
Indices: 15272993--15273081 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
15272983 TGTTATTGAT
* *
15272993 CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTTGACTACATC
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGACTACATC
15273038 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGACTACAT
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGACTACAT
15273082 ATCAGTGTGG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.21, C:0.22, G:0.25, T:0.31
Consensus pattern (45 bp):
CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGACTACATC
Found at i:15278478 original size:82 final size:82
Alignment explanation
Indices: 15278309--15278508 Score: 257
Period size: 82 Copynumber: 2.4 Consensus size: 82
15278299 ATTTAACATA
* * *
15278309 TTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCTAATCACCGGCACTTAGCCTGCTAGG
1 TTCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCTAATCACCGGCACTTAGCCTGCTAGA
*
15278374 TTTATAACCTGATTCAG
66 CTTATAACCTGATTCAG
*
15278391 ATCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTC-AGATCACCGGCACTTAGCCTGCTAG
1 TTCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCTA-ATCACCGGCACTTAGCCTGCTAG
* *
15278455 ACTTA-AAGTCTGAATT-AT
65 ACTTATAA-CCTG-ATTCAG
15278473 TTCACCGGC-CTTAAGCCTGCTAGGTTT-TAAACCTGA
1 TTCACCGGCACTT-AGCCTGCTAGGTTTAT-AACCTGA
15278509 AAATTTCAAT
Statistics
Matches: 105, Mismatches: 8, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
81 7 0.07
82 95 0.90
83 3 0.03
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (82 bp):
TTCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCTAATCACCGGCACTTAGCCTGCTAGA
CTTATAACCTGATTCAG
Found at i:15278481 original size:41 final size:41
Alignment explanation
Indices: 15278310--15278459 Score: 248
Period size: 41 Copynumber: 3.7 Consensus size: 41
15278300 TTTAACATAT
*
15278310 TCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCTA-A
1 TCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATTC-AGA
*
15278351 TCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGA
1 TCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAGA
*
15278392 TCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGA
1 TCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAGA
*
15278433 TCACCGGCACTTAGCCTGCTAGACTTA
1 TCACCGGCACTTAGCCTGCTAGGCTTA
15278460 AAGTCTGAAT
Statistics
Matches: 104, Mismatches: 4, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
40 1 0.01
41 103 0.99
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (41 bp):
TCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAGA
Found at i:15283806 original size:6 final size:6
Alignment explanation
Indices: 15283795--15283823 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
15283785 TTGATACAAA
15283795 TTTTAT TTTTAT TTTTAT TTTTAT TTTTA
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTA
15283824 CTAATATCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTAT
Found at i:15285488 original size:18 final size:18
Alignment explanation
Indices: 15285465--15285501 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
15285455 AGCTAGAGGA
15285465 TGAACAAATCAAGGAACC
1 TGAACAAATCAAGGAACC
15285483 TGAACAAATCAAGGAACC
1 TGAACAAATCAAGGAACC
15285501 T
1 T
15285502 ACACTGACAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.49, C:0.22, G:0.16, T:0.14
Consensus pattern (18 bp):
TGAACAAATCAAGGAACC
Found at i:15288633 original size:18 final size:19
Alignment explanation
Indices: 15288607--15288649 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
15288597 TGAGCAGGAA
15288607 AGTGAGGAACAGGAA-AGG
1 AGTGAGGAACAGGAAGAGG
* *
15288625 AGTGGGGAAGAGGAAGAGG
1 AGTGAGGAACAGGAAGAGG
*
15288644 AATGAG
1 AGTGAG
15288650 AAGAGGATGA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 13 0.65
19 7 0.35
ACGTcount: A:0.42, C:0.02, G:0.49, T:0.07
Consensus pattern (19 bp):
AGTGAGGAACAGGAAGAGG
Found at i:15294608 original size:16 final size:17
Alignment explanation
Indices: 15294587--15294618 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
15294577 AAATATGCAA
15294587 TCACATAA-TTCATATT
1 TCACATAACTTCATATT
15294603 TCACATAACTTCATAT
1 TCACATAACTTCATAT
15294619 CATCAATTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.38, C:0.22, G:0.00, T:0.41
Consensus pattern (17 bp):
TCACATAACTTCATATT
Found at i:15294845 original size:43 final size:41
Alignment explanation
Indices: 15294798--15294949 Score: 105
Period size: 43 Copynumber: 3.6 Consensus size: 41
15294788 TCCCAGACGT
* *
15294798 GGTCTTACATGTAATCACATATCGATGCCACTGTCTCAGATAG
1 GGTCTTACATGAAAACACATATCGATGCCACTGTC-CAGA-AG
* * * * *
15294841 GGTCTTACA-CAAATCAAATA-CGATGCCAATGTCCTAGACAT
1 GGTCTTACATGAAAACACATATCGATGCCACTGTCC-AGA-AG
* * * *
15294882 GGTCTTACACGTAAACACA-AGTCGATGACAAC-GTCCCAGACG
1 GGTCTTACATGAAAACACATA-TCGATG-CCACTGT-CCAGAAG
15294924 TGGTCTTACATGAAAACACATATCGA
1 -GGTCTTACATGAAAACACATATCGA
15294950 AATCCTATGT
Statistics
Matches: 85, Mismatches: 16, Indels: 16
0.73 0.14 0.14
Matches are distributed among these distances:
40 1 0.01
41 26 0.31
42 13 0.15
43 40 0.47
44 5 0.06
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.24
Consensus pattern (41 bp):
GGTCTTACATGAAAACACATATCGATGCCACTGTCCAGAAG
Found at i:15294886 original size:41 final size:42
Alignment explanation
Indices: 15294779--15294891 Score: 113
Period size: 41 Copynumber: 2.7 Consensus size: 42
15294769 GACTCGTATA
* * * ** *
15294779 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCG
1 ATGCCAATGTCCTAGACATGGTCTTACA-CAAATCAAATATCG
* * *
15294822 ATGCCACTGT-CTCAGATAGGGTCTTACACAAATCAAATA-CG
1 ATGCCAATGTCCT-AGACATGGTCTTACACAAATCAAATATCG
15294863 ATGCCAATGTCCTAGACATGGTCTTACAC
1 ATGCCAATGTCCTAGACATGGTCTTACAC
15294892 GTAAACACAA
Statistics
Matches: 56, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
41 25 0.45
42 11 0.20
43 20 0.36
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.26
Consensus pattern (42 bp):
ATGCCAATGTCCTAGACATGGTCTTACACAAATCAAATATCG
Found at i:15298093 original size:14 final size:14
Alignment explanation
Indices: 15298074--15298100 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
15298064 TCAATTACTA
15298074 TGAATGATTACAAC
1 TGAATGATTACAAC
15298088 TGAATGATTACAA
1 TGAATGATTACAA
15298101 ATGAGGGGGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.11, G:0.15, T:0.30
Consensus pattern (14 bp):
TGAATGATTACAAC
Found at i:15300110 original size:35 final size:35
Alignment explanation
Indices: 15300064--15300137 Score: 148
Period size: 35 Copynumber: 2.1 Consensus size: 35
15300054 ACAAGGAGAG
15300064 AAAGAAAAAAATTAGGGTTCATGCTATTATTTTGT
1 AAAGAAAAAAATTAGGGTTCATGCTATTATTTTGT
15300099 AAAGAAAAAAATTAGGGTTCATGCTATTATTTTGT
1 AAAGAAAAAAATTAGGGTTCATGCTATTATTTTGT
15300134 AAAG
1 AAAG
15300138 CTTCAATTGG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 39 1.00
ACGTcount: A:0.42, C:0.05, G:0.18, T:0.35
Consensus pattern (35 bp):
AAAGAAAAAAATTAGGGTTCATGCTATTATTTTGT
Found at i:15300876 original size:22 final size:22
Alignment explanation
Indices: 15300851--15300927 Score: 91
Period size: 22 Copynumber: 3.5 Consensus size: 22
15300841 TAGTGCCTAG
* * *
15300851 CAGGATTAGTGTCGATTTTATT
1 CAGGCTTAGTGTCGGTATTATT
* *
15300873 CAGGCTTAATGCCGGTATTATT
1 CAGGCTTAGTGTCGGTATTATT
* *
15300895 CAGTCTTAGTGTCGGTGTTATT
1 CAGGCTTAGTGTCGGTATTATT
15300917 CAGGCTTAGTG
1 CAGGCTTAGTG
15300928 CCTAGCAGGC
Statistics
Matches: 45, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 45 1.00
ACGTcount: A:0.19, C:0.14, G:0.26, T:0.40
Consensus pattern (22 bp):
CAGGCTTAGTGTCGGTATTATT
Found at i:15301223 original size:43 final size:43
Alignment explanation
Indices: 15301175--15301337 Score: 186
Period size: 43 Copynumber: 3.8 Consensus size: 43
15301165 TTATGTGAAA
* * *
15301175 AAACGCCGCTATAGAGCATGATCTTTAGCGACGCTTTTATCAC
1 AAACGCCGCTAAAGAACATGATCTTTAGCGGCGCTTTTATCAC
* *
15301218 AAACGCCGCTAAAGAACATGACCTTTAACGGCGCTTTTATCAC
1 AAACGCCGCTAAAGAACATGATCTTTAGCGGCGCTTTTATCAC
* * * * *
15301261 AAACGCCGATAAAATAACATGATCTTTGGTGGCGC-TTTACCCAC
1 AAACGCCGCT-AAAGAACATGATCTTTAGCGGCGCTTTTA-TCAC
*
15301305 AAACGCCGCTAAAGATCATG-TCTTTTAGCGGCG
1 AAACGCCGCTAAAGAACATGATC-TTTAGCGGCG
15301338 TTTACAAAAA
Statistics
Matches: 100, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
42 2 0.02
43 67 0.67
44 31 0.31
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (43 bp):
AAACGCCGCTAAAGAACATGATCTTTAGCGGCGCTTTTATCAC
Found at i:15302660 original size:7 final size:7
Alignment explanation
Indices: 15302650--15302718 Score: 57
Period size: 7 Copynumber: 9.6 Consensus size: 7
15302640 CCTTAAATTG
15302650 TAAACCA
1 TAAACCA
*
15302657 TAAATCA
1 TAAACCA
*
15302664 TAAATCA
1 TAAACCA
*
15302671 TAAACCC
1 TAAACCA
15302678 TAAACCCA
1 TAAA-CCA
* *
15302686 TAATCCC
1 TAAACCA
15302693 TAAACCCA
1 TAAA-CCA
*
15302701 TAATCCA
1 TAAACCA
*
15302708 TAAACCT
1 TAAACCA
15302715 TAAA
1 TAAA
15302719 ATAACATCTT
Statistics
Matches: 49, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
7 39 0.80
8 10 0.20
ACGTcount: A:0.49, C:0.29, G:0.00, T:0.22
Consensus pattern (7 bp):
TAAACCA
Found at i:15302693 original size:15 final size:15
Alignment explanation
Indices: 15302669--15302713 Score: 72
Period size: 15 Copynumber: 3.0 Consensus size: 15
15302659 AATCATAAAT
*
15302669 CATAAACCCTAAACC
1 CATAATCCCTAAACC
15302684 CATAATCCCTAAACC
1 CATAATCCCTAAACC
*
15302699 CATAATCCATAAACC
1 CATAATCCCTAAACC
15302714 TTAAAATAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.44, C:0.38, G:0.00, T:0.18
Consensus pattern (15 bp):
CATAATCCCTAAACC
Found at i:15302776 original size:14 final size:14
Alignment explanation
Indices: 15302737--15302781 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
15302727 TTTTAAACTT
*
15302737 TAAACCCTAAAACA
1 TAAACCCTAAACCA
* *
15302751 TATACCCCAAACCA
1 TAAACCCTAAACCA
*
15302765 TAAACCCTAAACTA
1 TAAACCCTAAACCA
15302779 TAA
1 TAA
15302782 TGATAACTAA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.51, C:0.31, G:0.00, T:0.18
Consensus pattern (14 bp):
TAAACCCTAAACCA
Found at i:15302960 original size:15 final size:15
Alignment explanation
Indices: 15302936--15302969 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
15302926 CCTAACGTCT
*
15302936 AACCCTTAACCCATA
1 AACCCATAACCCATA
*
15302951 AACCCATAACCCCTA
1 AACCCATAACCCATA
15302966 AACC
1 AACC
15302970 TTAAATCCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.41, C:0.44, G:0.00, T:0.15
Consensus pattern (15 bp):
AACCCATAACCCATA
Found at i:15303418 original size:41 final size:41
Alignment explanation
Indices: 15303359--15303554 Score: 223
Period size: 41 Copynumber: 4.8 Consensus size: 41
15303349 TAAAATGTTT
* *
15303359 TTAGCGGTGCTTTTTCAAAAATGCCGCTAAAGCTC-CCAGCA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGC-CACCAGCA
*
15303400 TTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCACCAGCA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGCCACCAGCA
* * * * *
15303441 TTAGTGACGCTTTCTCAAAAATGCCACTAAAGCCACCAGCA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGCCACCAGCA
* * ****** *
15303482 TTAGCGGTGCTTTTTCAAAAACGCCGCTAATGCTTGGTTCT
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGCCACCAGCA
15303523 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAG
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAG
15303555 ACCCGAAAGG
Statistics
Matches: 131, Mismatches: 23, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
40 1 0.01
41 130 0.99
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (41 bp):
TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGCCACCAGCA
Found at i:15321089 original size:91 final size:91
Alignment explanation
Indices: 15320964--15321171 Score: 326
Period size: 91 Copynumber: 2.3 Consensus size: 91
15320954 TTGATTTTAG
*
15320964 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTAT
* *
15321029 ATTTAATATTAATTATTTTAAATTGTA
65 ATGTAATATTAATTATTTTAAATTATA
*
15321056 TAAATTCATATAAGAAAATTTATTATTAAGAATTTTATGAAATTATATATTATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTATA
*
15321121 TGTAATATTTATTATTTTAAATTATA
66 TGTAATATTAATTATTTTAAATTATA
* * * *
15321147 CAAATTCATAAAATATAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
15321172 GTTATAATTA
Statistics
Matches: 107, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
91 91 0.85
92 16 0.15
ACGTcount: A:0.45, C:0.03, G:0.04, T:0.48
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTATA
TGTAATATTAATTATTTTAAATTATA
Found at i:15321091 original size:44 final size:44
Alignment explanation
Indices: 15320964--15321102 Score: 122
Period size: 47 Copynumber: 3.0 Consensus size: 44
15320954 TTGATTTTAG
*
15320964 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTA
1 TAAATTCATATAAGAA-AATTTATTATTAAGAATTTTA-GAAATTA
* * * ** *
15321010 TATA-TCATTATTAA-ATTATATTTAATATTAATTATTTTA-AATTGTA
1 TAAATTCA-TA-TAAGA--AAATTTATTATTAAGAATTTTAGAAAT-TA
15321056 TAAATTCATATAAGAAAATTTATTATTAAGAATTTTATGAAATTA
1 TAAATTCATATAAGAAAATTTATTATTAAGAATTTTA-GAAATTA
15321101 TA
1 TA
15321103 TATTATTATT
Statistics
Matches: 71, Mismatches: 13, Indels: 19
0.69 0.13 0.18
Matches are distributed among these distances:
44 18 0.25
45 13 0.18
46 17 0.24
47 22 0.31
48 1 0.01
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.47
Consensus pattern (44 bp):
TAAATTCATATAAGAAAATTTATTATTAAGAATTTTAGAAATTA
Found at i:15321133 original size:27 final size:28
Alignment explanation
Indices: 15321075--15321146 Score: 85
Period size: 26 Copynumber: 2.6 Consensus size: 28
15321065 ATAAGAAAAT
*
15321075 TTATTATTAAGAATTTTATGAAATTATATA
1 TTATTATT-A-AATTATATGAAATTATATA
* *
15321105 TTATTATTAAATTATATGTAA-TATTTA
1 TTATTATTAAATTATATGAAATTATATA
15321132 TTATT-TTAAATTATA
1 TTATTATTAAATTATA
15321147 CAAATTCATA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
26 10 0.26
27 10 0.26
28 10 0.26
29 1 0.03
30 8 0.21
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (28 bp):
TTATTATTAAATTATATGAAATTATATA
Found at i:15321138 original size:47 final size:47
Alignment explanation
Indices: 15320996--15321139 Score: 138
Period size: 47 Copynumber: 3.1 Consensus size: 47
15320986 ATTATTAAGA
*
15320996 ATTTTATGAAATTATATATCATTATTAAATTATATTTAATATTAATT
1 ATTTTATGAAATTATATATAATTATTAAATTATATTTAATATTAATT
* * * **
15321043 A-TTT-T-AAATTGTATA-AATTCATATAAGA--AAATTTATTATTAAGA
1 ATTTTATGAAATTATATATAATT-AT-TAA-ATTATATTTAATATTAATT
* * *
15321087 ATTTTATGAAATTATATATTATTATTAAATTATATGTAATATTTATT
1 ATTTTATGAAATTATATATAATTATTAAATTATATTTAATATTAATT
15321134 ATTTTA
1 ATTTTA
15321140 AATTATACAA
Statistics
Matches: 74, Mismatches: 14, Indels: 18
0.70 0.13 0.17
Matches are distributed among these distances:
43 3 0.04
44 24 0.32
45 8 0.11
46 8 0.11
47 28 0.38
48 3 0.04
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.51
Consensus pattern (47 bp):
ATTTTATGAAATTATATATAATTATTAAATTATATTTAATATTAATT
Done.