genome.fa.s14.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  57  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15321004--15321146	44	3.2	43	68	16	119	44	1	3	50	1.27
15321175--15321369	59	3.4	55	69	18	146	42	2	3	51	1.31
15321187--15321479	120	2.4	120	91	3	457	42	2	5	49	1.39
15321312--15321363	15	3.6	15	80	12	56	44	0	1	53	1.11
15321447--15321482	15	2.3	16	90	4	56	41	0	5	52	1.24
15321416--15321730	155	2.0	157	93	1	535	46	5	3	44	1.43
15321583--15321617	18	2.0	17	88	5	52	45	0	0	54	0.99
15321779--15321873	45	2.1	44	84	9	122	33	25	6	34	1.81
15325174--15325210	6	6.5	6	90	9	60	13	0	16	70	1.17
15334441--15334489	20	2.6	19	81	12	57	65	0	2	32	1.04
15339386--15339481	49	2.0	47	84	7	124	29	10	9	51	1.67
15345964--15346029	13	5.1	13	80	7	71	39	27	4	28	1.76
15346961--15347012	25	2.1	25	96	0	95	36	11	11	40	1.78
15348150--15348267	30	3.9	30	88	0	128	28	16	21	33	1.94
15360320--15360374	28	2.0	28	89	7	85	21	7	12	58	1.59
15373810--15373884	11	6.7	11	77	7	62	21	26	4	48	1.68
15375097--15375122	7	3.7	7	100	0	52	26	0	15	57	1.38
15376355--15376398	8	5.2	8	80	20	54	52	0	0	47	1.00
15376362--15376415	19	2.8	19	97	0	99	48	0	0	51	1.00
15376359--15376412	12	4.2	13	80	20	60	48	0	0	51	1.00
15376446--15376531	22	4.0	21	88	8	120	44	32	0	23	1.54
15376446--15376531	43	2.0	44	88	6	131	44	32	0	23	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15379629--15380061	124	3.5	124	91	0	688	30	21	18	30	1.96
15380185--15380227	22	2.0	22	90	0	68	48	34	0	16	1.46
15383226--15383280	6	9.2	6	81	15	60	34	1	29	34	1.68
15383358--15383383	10	2.6	10	100	0	52	26	19	0	53	1.45
15385075--15385099	2	12.5	2	100	0	50	52	0	48	0	1.00
15405477--15405580	49	2.1	49	89	3	156	28	8	12	50	1.70
15407004--15407056	24	2.3	22	78	18	54	39	1	7	50	1.41
15407016--15407206	61	3.2	61	73	11	212	42	1	4	50	1.32
15406972--15407241	120	2.2	120	97	0	504	43	1	4	51	1.28
15407386--15407479	46	2.1	46	88	4	138	35	28	5	30	1.80
15407461--15407498	16	2.4	16	95	0	67	26	34	2	36	1.71
15407955--15408046	27	3.3	26	75	22	80	38	0	5	56	1.22
15409774--15409840	30	2.2	30	79	12	75	37	1	5	55	1.34
15421268--15421334	16	4.2	16	80	0	89	56	1	13	28	1.46
15421479--15421511	17	1.9	17	88	11	50	57	0	3	39	1.14
15423077--15423660	44	13.8	43	70	11	219	26	23	21	28	1.99
15423160--15423530	205	1.8	205	92	0	634	27	23	21	27	1.99
15423402--15423572	90	1.9	90	83	0	225	27	25	19	27	1.99
15423369--15423618	134	1.9	133	82	2	313	26	24	22	27	1.99
15435856--15435922	16	4.2	16	80	0	89	56	1	13	28	1.46
15436065--15436097	17	1.9	17	88	11	50	57	0	3	39	1.14
15438455--15438529	20	3.8	19	75	8	71	44	13	9	33	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15455373--15455471	51	1.9	52	81	8	121	26	8	7	58	1.52
15457159--15457298	69	2.0	69	100	0	280	31	21	17	30	1.96
15465289--15465990	355	2.0	355	92	0	1172	34	14	23	28	1.94
15467230--15467262	17	1.9	17	100	0	66	42	6	24	27	1.78
15469908--15469951	18	2.3	19	80	7	54	15	18	0	65	1.27
15484941--15484985	22	2.0	24	91	8	76	53	0	22	24	1.46
15498386--15498412	2	13.5	2	100	0	54	51	0	0	48	1.00
15504292--15504321	4	7.5	4	100	0	60	50	26	0	23	1.50
15508183--15508255	25	2.9	24	76	15	76	23	23	19	34	1.97
15510281--15510335	24	2.3	24	93	0	92	29	16	5	49	1.68
15531773--15531805	3	11.0	3	100	0	66	33	33	0	33	1.58
15532607--15532635	15	1.9	15	100	0	58	55	0	20	24	1.44
15535667--15535762	50	1.9	50	86	0	138	36	14	20	28	1.92
15540773--15540816	18	2.3	19	84	7	63	50	0	6	43	1.29
15542086--15542131	15	2.9	17	78	15	55	41	0	13	45	1.43
15551761--15551794	6	5.7	6	100	0	68	70	0	0	29	0.87
15555541--15555789	50	4.8	50	85	4	284	20	29	24	26	1.99
15555540--15555789	100	2.4	104	88	6	357	20	29	24	26	1.99
15555884--15555915	13	2.5	13	94	0	55	56	12	0	31	1.37
15556127--15556184	30	1.9	30	85	0	80	29	22	5	43	1.75
15556891--15556985	40	2.3	40	90	3	145	0	28	8	63	1.24
15557006--15557040	5	6.8	5	96	3	61	62	0	0	37	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15559795--15559859	17	3.8	17	83	2	67	33	4	13	47	1.64
15560025--15560312	124	2.3	127	81	4	332	28	15	23	32	1.95
15564269--15564313	10	4.5	10	80	0	54	48	20	2	28	1.61
15572276--15572647	196	1.9	196	89	0	573	34	26	14	23	1.94
15573670--15573722	20	2.5	22	81	6	65	22	16	18	41	1.90
15574480--15574524	10	4.5	10	80	0	54	48	20	2	28	1.61
15574993--15575017	8	3.1	8	100	0	50	48	24	0	28	1.52
15579325--15579373	18	3.1	15	76	18	55	55	2	0	42	1.11
15579327--15579369	18	2.4	18	88	0	68	48	2	0	48	1.14
15579909--15579946	20	1.9	20	84	10	51	47	2	13	36	1.56
15588811--15588955	41	3.5	41	87	0	200	26	20	28	24	1.99
15589737--15589836	39	2.6	39	90	0	146	34	3	20	43	1.67
15589802--15589850	16	2.9	17	82	8	57	38	4	20	36	1.72
15592051--15592100	22	2.3	22	80	12	59	14	2	16	68	1.31
15595197--15595361	28	5.9	28	85	2	181	33	18	22	26	1.96
15597056--15597125	22	3.3	20	71	21	70	30	22	12	34	1.92
15597068--15597132	22	2.9	23	68	25	66	27	23	10	38	1.88
15604990--15605016	3	9.0	3	100	0	54	33	33	33	0	1.58
15608579--15608647	32	2.2	32	97	0	129	40	17	2	39	1.64
15619895--15619941	20	2.3	20	85	0	67	21	12	36	29	1.91
15621082--15621189	51	2.1	53	89	3	166	38	13	14	32	1.86
15622175--15622261	37	2.4	37	84	3	113	39	17	22	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15622470--15622521	22	2.3	23	83	3	70	57	13	0	28	1.36
15622492--15622571	37	2.2	37	81	2	90	51	10	1	37	1.44
15623940--15624065	58	2.2	58	88	2	182	53	3	0	43	1.16
15623927--15624093	58	2.9	56	82	8	169	53	2	1	41	1.23
15627999--15628094	47	2.0	47	93	0	165	46	8	5	39	1.56
15630196--15630246	25	2.0	25	100	0	102	49	19	7	23	1.74
15633455--15633501	21	2.2	22	92	3	78	21	19	38	21	1.94
15634635--15634678	21	2.1	21	95	0	79	34	9	11	45	1.72
15635487--15635529	16	2.8	15	82	6	50	79	2	9	9	1.03
15636647--15636684	18	2.2	18	90	9	62	71	0	5	23	1.07
15640941--15641007	20	3.3	20	76	12	64	58	11	10	19	1.62
15640950--15640989	21	1.9	21	90	10	64	60	10	15	15	1.60
15641333--15641359	3	9.0	3	100	0	54	66	0	0	33	0.92
15648432--15648495	17	3.6	17	72	15	58	26	14	14	45	1.82
15648424--15648494	36	2.0	36	94	0	124	25	14	15	45	1.84
15648424--15648477	17	3.0	18	71	17	58	24	14	16	44	1.85
15653106--15653130	13	1.9	13	100	0	50	8	0	24	68	1.16
15654106--15654438	114	2.9	114	92	1	551	40	3	13	41	1.62
15654922--15655030	41	2.7	41	88	5	166	27	16	29	26	1.97
15656372--15656435	17	3.6	17	72	15	58	26	14	14	45	1.82
15656364--15656434	36	2.0	36	94	0	124	25	14	15	45	1.84
15656364--15656417	17	3.0	18	71	17	58	24	14	16	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15657214--15657284	37	1.9	37	82	5	90	42	14	1	42	1.54
15657718--15657767	24	2.0	25	84	7	66	44	24	0	32	1.54
15659522--15659547	9	2.9	9	100	0	52	57	0	0	42	0.98
15659673--15659709	16	2.3	17	86	13	60	62	0	0	37	0.96
15664213--15664263	21	2.4	21	86	0	75	5	43	17	33	1.73
15667087--15667310	9	24.3	9	75	4	196	31	2	16	48	1.61
15667087--15667286	27	7.3	27	84	4	231	31	1	17	50	1.55
15667515--15667552	16	2.4	16	91	4	60	52	5	0	42	1.24
15667549--15667576	13	2.2	13	100	0	56	46	7	7	39	1.59
15667545--15667594	17	3.2	17	81	18	72	52	6	6	36	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211