Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62811768
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 736185 characters in sequence are not A, C, G, or T
File 71 of 211
Found at i:18946535 original size:17 final size:16
Alignment explanation
Indices: 18946512--18946557 Score: 56
Period size: 17 Copynumber: 2.8 Consensus size: 16
18946502 TATTAAATAT
18946512 TATTAAAATAATAGAA
1 TATTAAAATAATAGAA
**
18946528 TGATTAAAATAAATTTAA
1 T-ATTAAAAT-AATAGAA
18946546 TATTAAAATAAT
1 TATTAAAATAAT
18946558 TAATTTAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
16 4 0.15
17 16 0.62
18 6 0.23
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (16 bp):
TATTAAAATAATAGAA
Found at i:18946564 original size:20 final size:20
Alignment explanation
Indices: 18946539--18946577 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
18946529 GATTAAAATA
18946539 AATTTAATATTAAAATAATT
1 AATTTAATATTAAAATAATT
*
18946559 AATTTAATATTAAATTAAT
1 AATTTAATATTAAAATAAT
18946578 AAAATACTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
AATTTAATATTAAAATAATT
Found at i:18946615 original size:37 final size:36
Alignment explanation
Indices: 18946546--18946637 Score: 96
Period size: 37 Copynumber: 2.4 Consensus size: 36
18946536 ATAAATTTAA
*
18946546 TATTAAAATAATTAATTTAATATTAAATTAATA-AAATAC
1 TATTAAAATAA-T-ATTAAAT-TTAAATTAATATAAA-AC
* * *
18946585 TATTAAGATAAATATTAAATTTAATTTAATATTAAAC
1 TATTAAAAT-AATATTAAATTTAAATTAATATAAAAC
18946622 TATTAAAATAATATTA
1 TATTAAAATAATATTA
18946638 TTTTTGAAAT
Statistics
Matches: 46, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
36 7 0.15
37 20 0.43
38 8 0.17
39 9 0.20
40 2 0.04
ACGTcount: A:0.54, C:0.02, G:0.01, T:0.42
Consensus pattern (36 bp):
TATTAAAATAATATTAAATTTAAATTAATATAAAAC
Found at i:18956909 original size:24 final size:23
Alignment explanation
Indices: 18956861--18956909 Score: 55
Period size: 24 Copynumber: 2.1 Consensus size: 23
18956851 TTAAAACAGC
*
18956861 TTCTAAAAGAAACTCAAGAGCAA
1 TTCTAAAAGAAACTCAACAGCAA
*
18956884 TTCTTAAAGAAAACTCAAACAG-AA
1 TTCTAAAAG-AAACTC-AACAGCAA
18956908 TT
1 TT
18956910 ATTATTAACA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
23 8 0.36
24 10 0.45
25 4 0.18
ACGTcount: A:0.51, C:0.16, G:0.10, T:0.22
Consensus pattern (23 bp):
TTCTAAAAGAAACTCAACAGCAA
Found at i:18959578 original size:36 final size:36
Alignment explanation
Indices: 18959529--18959602 Score: 105
Period size: 36 Copynumber: 2.1 Consensus size: 36
18959519 GGAGGAGTGC
* *
18959529 ATCAGTCAGAATAGATCC-AAAAGTCTATTGAACTGA
1 ATCAGTCAAAATAGATCCGAAAA-ACTATTGAACTGA
*
18959565 ATCAGTCAAAATAGATCCGAAAAACTGTTGAACTGA
1 ATCAGTCAAAATAGATCCGAAAAACTATTGAACTGA
18959601 AT
1 AT
18959603 AGAGTTTATT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
36 30 0.88
37 4 0.12
ACGTcount: A:0.43, C:0.16, G:0.16, T:0.24
Consensus pattern (36 bp):
ATCAGTCAAAATAGATCCGAAAAACTATTGAACTGA
Found at i:18964441 original size:17 final size:17
Alignment explanation
Indices: 18964421--18964459 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
18964411 ATAATAACAT
*
18964421 AATTTAAATTAATGCTA
1 AATTTAAATTAACGCTA
18964438 AATTTAAATTAACGCTA
1 AATTTAAATTAACGCTA
18964455 AATTT
1 AATTT
18964460 GAACCAAAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.46, C:0.08, G:0.05, T:0.41
Consensus pattern (17 bp):
AATTTAAATTAACGCTA
Found at i:18972160 original size:16 final size:16
Alignment explanation
Indices: 18972127--18972160 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
18972117 ACTATGGGCC
*
18972127 TTTTTTTATTTTGGGT
1 TTTTTTTATTTAGGGT
*
18972143 TTTTTTTATTTAGTGT
1 TTTTTTTATTTAGGGT
18972159 TT
1 TT
18972161 GGTTTTGTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.09, C:0.00, G:0.15, T:0.76
Consensus pattern (16 bp):
TTTTTTTATTTAGGGT
Found at i:18972776 original size:89 final size:89
Alignment explanation
Indices: 18972644--18973109 Score: 603
Period size: 89 Copynumber: 5.2 Consensus size: 89
18972634 TGTTCAACTA
* * * * * * *
18972644 CAACTTCAGGGAAATAAGATTCGCTATCCTCAGTCTGCTCCACTGCAACTTTAGGTAGATAAGGC
1 CAACTTCAGGGAGATAAGGTTTGCTATCTTCAGTCTGCTCCACTGCAACTTTAGGGATATAAGAC
* *
18972709 -TG-ATGGCTTCAATCTGCTCCGCTG
66 TTGTAT--CTTCAACCTGCTCCACTG
* * * * * *
18972733 TAACTTCAGGGAGATAGGGTTTGCGATCTTCAGTCTACTCCACTACAACTTCAGGGATATAAGAC
1 CAACTTCAGGGAGATAAGGTTTGCTATCTTCAGTCTGCTCCACTGCAACTTTAGGGATATAAGAC
* *
18972798 TTGTATCTTCAACCTGTTACACTG
66 TTGTATCTTCAACCTGCTCCACTG
* * *
18972822 TAACTTCAGAGAGATAGGGTTTGCTATCTTCAGTCTGCTCCACTGCAACTTTAGGGATATAAGAC
1 CAACTTCAGGGAGATAAGGTTTGCTATCTTCAGTCTGCTCCACTGCAACTTTAGGGATATAAGAC
18972887 TTGTATCTTCAACCTGCTCCACTG
66 TTGTATCTTCAACCTGCTCCACTG
* * *
18972911 CAACTTCAGGGAGATAAGGTTTGCTATCTTCAGTCTGCTCTACTGCAACTTCAGGTATATAAGAC
1 CAACTTCAGGGAGATAAGGTTTGCTATCTTCAGTCTGCTCCACTGCAACTTTAGGGATATAAGAC
18972976 TTGTATCTTCAACCTGCTCCACTG
66 TTGTATCTTCAACCTGCTCCACTG
* * * ** *
18973000 CAACTTCAGTGAGATAAGGTTTGTTATCTTCAGTATGCTCCACTATAACTTTAGGGAGATAAGAC
1 CAACTTCAGGGAGATAAGGTTTGCTATCTTCAGTCTGCTCCACTGCAACTTTAGGGATATAAGAC
** *
18973065 TTGTGGCTTCAACCTGCCCCACTG
66 TTGTATCTTCAACCTGCTCCACTG
*
18973089 CAACTTCAGAGAGATAAGGTT
1 CAACTTCAGGGAGATAAGGTT
18973110 CACCATGATG
Statistics
Matches: 332, Mismatches: 43, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
89 328 0.99
90 2 0.01
91 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (89 bp):
CAACTTCAGGGAGATAAGGTTTGCTATCTTCAGTCTGCTCCACTGCAACTTTAGGGATATAAGAC
TTGTATCTTCAACCTGCTCCACTG
Found at i:18972868 original size:178 final size:179
Alignment explanation
Indices: 18972490--18973109 Score: 643
Period size: 178 Copynumber: 3.5 Consensus size: 179
18972480 ATAGGATTAG
* * * * *
18972490 CTTCAATCTGCTCCACTACAACTTCAGTGAGATAAGA-TTG--GGATCTTTAACCTGCTCCACTG
1 CTTCAGTCTGCTCCACTGCAACTTTAGGGAGATAAGACTTGATGG--CTTCAACCTGCTCCACTG
* * * * * * * *
18972552 CAAATTCAGGGAGATAAGGTTT--GAT-ATGA-TCTGCTCTACTGCAACTTCAGAGAGATAAGAT
64 CAACTTCAGGGAGATAAGGTTTGCGATCTTCAGTCTACTCCACTACAACTTCAGGGATATAAGA-
* ** * * * * * *
18972613 CTGTAATTTATAGCTTCAATTTG-TTCAACTACAACTTCAGGGAAATAAGATTCGCTAT
128 C--T--TGTAT--CTTCAACCTGCTAC-ACTGCAACTTCAGAGAGATAAGGTTTGCTAT
* * * * * *
18972671 CCTCAGTCTGCTCCACTGCAACTTTAGGTAGATAAGGC-TGATGGCTTCAATCTGCTCCGCTGTA
1 CTTCAGTCTGCTCCACTGCAACTTTAGGGAGATAAGACTTGATGGCTTCAACCTGCTCCACTGCA
*
18972735 ACTTCAGGGAGATAGGGTTTGCGATCTTCAGTCTACTCCACTACAACTTCAGGGATATAAGACTT
66 ACTTCAGGGAGATAAGGTTTGCGATCTTCAGTCTACTCCACTACAACTTCAGGGATATAAGACTT
* * *
18972800 GTATCTTCAACCTGTTACACTGTAACTTCAGAGAGATAGGGTTTGCTAT
131 GTATCTTCAACCTGCTACACTGCAACTTCAGAGAGATAAGGTTTGCTAT
*
18972849 CTTCAGTCTGCTCCACTGCAACTTTAGGGATATAAGACTTGTAT--CTTCAACCTGCTCCACTGC
1 CTTCAGTCTGCTCCACTGCAACTTTAGGGAGATAAGACTTG-ATGGCTTCAACCTGCTCCACTGC
* * * * *
18972912 AACTTCAGGGAGATAAGGTTTGCTATCTTCAGTCTGCTCTACTGCAACTTCAGGTATATAAGACT
65 AACTTCAGGGAGATAAGGTTTGCGATCTTCAGTCTACTCCACTACAACTTCAGGGATATAAGACT
* * *
18972977 TGTATCTTCAACCTGCTCCACTGCAACTTCAGTGAGATAAGGTTTGTTAT
130 TGTATCTTCAACCTGCTACACTGCAACTTCAGAGAGATAAGGTTTGCTAT
* ** *
18973027 CTTCAGTATGCTCCACTATAACTTTAGGGAGATAAGACTTG-TGGCTTCAACCTGCCCCACTGCA
1 CTTCAGTCTGCTCCACTGCAACTTTAGGGAGATAAGACTTGATGGCTTCAACCTGCTCCACTGCA
*
18973091 ACTTCAGAGAGATAAGGTT
66 ACTTCAGGGAGATAAGGTT
18973110 CACCATGATG
Statistics
Matches: 371, Mismatches: 56, Indels: 27
0.82 0.12 0.06
Matches are distributed among these distances:
176 1 0.00
178 259 0.70
179 4 0.01
180 6 0.02
181 66 0.18
182 1 0.00
183 5 0.01
184 3 0.01
185 26 0.07
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (179 bp):
CTTCAGTCTGCTCCACTGCAACTTTAGGGAGATAAGACTTGATGGCTTCAACCTGCTCCACTGCA
ACTTCAGGGAGATAAGGTTTGCGATCTTCAGTCTACTCCACTACAACTTCAGGGATATAAGACTT
GTATCTTCAACCTGCTACACTGCAACTTCAGAGAGATAAGGTTTGCTAT
Found at i:18973094 original size:44 final size:44
Alignment explanation
Indices: 18972490--18973107 Score: 449
Period size: 44 Copynumber: 13.8 Consensus size: 44
18972480 ATAGGATTAG
* * * *
18972490 CTTCAATCTGCTCCACTACAACTTCAGTGAGATAA-GATTGGGAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTT-GTAT
* * * *
18972534 CTTTAACCTGCTCCACTGCAAATTCAGGGAGATAAGGTTTG-AT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTTGTAT
* * * * * *
18972577 -AT-GATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG-GC--T--TGTAT
* * * * * *
18972624 AGCTTCAATTTGTTCAACTACAACTTCAGGGAAATAA-GATTCGCTAT
1 --CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTT-G-TAT
* * * *
18972671 CCTCAGTCTGCTCCACTGCAACTTTAGGTAGATAAGGC-TG-AT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTTGTAT
* * * * *
18972713 GGCTTCAATCTGCTCCGCTGTAACTTCAGGGAGATAGGGTTTGCGAT
1 --CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTTG-TAT
* * * * *
18972760 CTTCAGTCTACTCCACTACAACTTCAGGGATATAAGACTTGTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTTGTAT
* * * * * * *
18972804 CTTCAACCTGTTACACTGTAACTTCAGAGAGATAGGGTTTGCTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTTG-TAT
* * * *
18972849 CTTCAGTCTGCTCCACTGCAACTTTAGGGATATAAGACTTGTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTTGTAT
* *
18972893 CTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGCTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTTG-TAT
* * * * *
18972938 CTTCAGTCTGCTCTACTGCAACTTCAGGTATATAAGACTTGTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTTGTAT
* * *
18972982 CTTCAACCTGCTCCACTGCAACTTCAGTGAGATAAGGTTTGTTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTTG-TAT
* * ** * * **
18973027 CTTCAGTATGCTCCACTATAACTTTAGGGAGATAAGACTTGTGG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTTGTAT
* * *
18973071 CTTCAACCTGCCCCACTGCAACTTCAGAGAGATAAGG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGG
18973108 TTCACCATGA
Statistics
Matches: 434, Mismatches: 118, Indels: 44
0.73 0.20 0.07
Matches are distributed among these distances:
41 27 0.06
42 3 0.01
43 2 0.00
44 197 0.45
45 170 0.39
46 2 0.00
47 8 0.02
50 1 0.00
51 24 0.06
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (44 bp):
CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTTGTAT
Found at i:18987382 original size:22 final size:21
Alignment explanation
Indices: 18987352--18987410 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 21
18987342 ATACAATCGT
*
18987352 AGATTTGATATGTAATCTTAGG
1 AGATTTGATTTGTAATCTTA-G
*
18987374 AGATATGATTTTGTAAATCTTAG
1 AGATTTGA-TTTGT-AATCTTAG
18987397 AGATTTGATTTGTA
1 AGATTTGATTTGTA
18987411 GATACCATTC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
21 1 0.03
22 12 0.38
23 12 0.38
24 7 0.22
ACGTcount: A:0.32, C:0.03, G:0.20, T:0.44
Consensus pattern (21 bp):
AGATTTGATTTGTAATCTTAG
Found at i:18992521 original size:22 final size:21
Alignment explanation
Indices: 18992491--18992549 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 21
18992481 ATACAATCGT
*
18992491 AGATTTGATATGTAATCTTAGG
1 AGATTTGATTTGTAATCTTA-G
*
18992513 AGATATGATTTTGTAAATCTTAG
1 AGATTTGA-TTTGT-AATCTTAG
18992536 AGATTTGATTTGTA
1 AGATTTGATTTGTA
18992550 GATACCATTC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
21 1 0.03
22 12 0.38
23 12 0.38
24 7 0.22
ACGTcount: A:0.32, C:0.03, G:0.20, T:0.44
Consensus pattern (21 bp):
AGATTTGATTTGTAATCTTAG
Found at i:19000361 original size:12 final size:12
Alignment explanation
Indices: 19000341--19000371 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
19000331 TCGCTTCTTC
*
19000341 ACCATCATCGGA
1 ACCAGCATCGGA
19000353 ACCAGCATCGGA
1 ACCAGCATCGGA
19000365 ACCAGCA
1 ACCAGCA
19000372 CCAACACCAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.35, C:0.35, G:0.19, T:0.10
Consensus pattern (12 bp):
ACCAGCATCGGA
Found at i:19001552 original size:14 final size:14
Alignment explanation
Indices: 19001512--19001554 Score: 52
Period size: 15 Copynumber: 3.1 Consensus size: 14
19001502 AAACCAATTC
*
19001512 AATAA-TTTAAAAC
1 AATAATTTTAAAAA
19001525 AATAATTATTAAAAA
1 AATAATT-TTAAAAA
*
19001540 AATACTTTTAAAAA
1 AATAATTTTAAAAA
19001554 A
1 A
19001555 CTTTAAATGA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
13 5 0.19
14 9 0.35
15 12 0.46
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.33
Consensus pattern (14 bp):
AATAATTTTAAAAA
Found at i:19004915 original size:10 final size:10
Alignment explanation
Indices: 19004900--19004935 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
19004890 GAGATAAAGA
19004900 AGAAAGAGAG
1 AGAAAGAGAG
19004910 AGAAAGAGAG
1 AGAAAGAGAG
*
19004920 AGAGAGAGAG
1 AGAAAGAGAG
19004930 ATGAAA
1 A-GAAA
19004936 TCAATATCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 20 0.87
11 3 0.13
ACGTcount: A:0.58, C:0.00, G:0.39, T:0.03
Consensus pattern (10 bp):
AGAAAGAGAG
Found at i:19012138 original size:56 final size:50
Alignment explanation
Indices: 19012067--19012259 Score: 208
Period size: 50 Copynumber: 3.7 Consensus size: 50
19012057 ATTTGGGTAA
* *
19012067 AGAGATCCCATGTAAGACCATGTCTGGAACATGGCATTGACATCATTGAGATTATG
1 AGAGGTCCCATGTAAGACCATGTCTGGAACATGGCATTGACA-C--CGAG---ATG
* *
19012123 AGAGGTCCCATGTAAGACCATGTCT-GAGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGA-ACATGGCATTGACACCGAGATG
* * * *
19012173 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGAACATGGCATTGACACCGAGATG
** * *
19012223 AGAGGTCCCCCGTAAGACCATGTTTGGGACATGGCAT
1 AGAGGTCCCATGTAAGACCATGTCTGGAACATGGCAT
19012260 GGGCACCTAT
Statistics
Matches: 125, Mismatches: 10, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
50 82 0.66
51 1 0.01
53 3 0.02
55 3 0.02
56 36 0.29
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.22
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGAACATGGCATTGACACCGAGATG
Found at i:19012175 original size:50 final size:50
Alignment explanation
Indices: 19012120--19012266 Score: 222
Period size: 50 Copynumber: 2.9 Consensus size: 50
19012110 CATTGAGATT
* *
19012120 ATGAGAGGTCCCATGTAAGACCATGTCTGAGACATGGCGTTGGCACCGAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAG
* *
19012170 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAG
** * *
19012220 ATGAGAGGTCCCCCGTAAGACCATGTTTGGGACATGGCATGGGCACC
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACC
19012267 TATATGAAAA
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
50 90 1.00
ACGTcount: A:0.25, C:0.23, G:0.32, T:0.20
Consensus pattern (50 bp):
ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAG
Found at i:19012254 original size:100 final size:102
Alignment explanation
Indices: 19012067--19012266 Score: 251
Period size: 100 Copynumber: 1.9 Consensus size: 102
19012057 ATTTGGGTAA
*
19012067 AGAGATCCCATGTAAGACCATGTCTGGAACATGGCATTGACATCATTGAGATTATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGAACATGGCATTGACACCA-T-AG--TATGAGAGGTCCC
* * *
19012132 ATGTAAGACCATGTCTGAGACATGGCGTTGGCACCGAGATG
62 ACGTAAGACCATGTCTGAGACATGGCATGGGCACCGAGATG
* * * * *
19012173 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCA-AG-ATGAGAGGTCCCCCGT
1 AGAGATCCCATGTAAGACCATGTCTGGAACATGGCATTGACACCATAGTATGAGAGGTCCCACGT
* *
19012236 AAGACCATGTTTGGGACATGGCATGGGCACC
66 AAGACCATGTCTGAGACATGGCATGGGCACC
19012267 TATATGAAAA
Statistics
Matches: 83, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
100 41 0.49
103 2 0.02
106 40 0.48
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.21
Consensus pattern (102 bp):
AGAGATCCCATGTAAGACCATGTCTGGAACATGGCATTGACACCATAGTATGAGAGGTCCCACGT
AAGACCATGTCTGAGACATGGCATGGGCACCGAGATG
Found at i:19012286 original size:100 final size:100
Alignment explanation
Indices: 19012120--19012306 Score: 230
Period size: 100 Copynumber: 1.9 Consensus size: 100
19012110 CATTGAGATT
* * * * **
19012120 ATGAGAGGTCCCATGTAAGACCATGTCTGAGACATGGCGTTGGCACCGAGATGAGAGGTCCCATG
1 ATGAGAGGTCCCACGTAAGACCATGTCTGAGACATGGCATGGGCACCGAGATGAAAACTCCCATG
*
19012185 TAAGACCATGTCTGGGACATGGCGTTGGCACCAAG
66 TAAGACCATATCTGGGACATGGCGTTGGCACCAAG
* * * * * **
19012220 ATGAGAGGTCCCCCGTAAGACCATGTTTGGGACATGGCATGGGCACCTATATGAAAACTCTTATG
1 ATGAGAGGTCCCACGTAAGACCATGTCTGAGACATGGCATGGGCACCGAGATGAAAACTCCCATG
* *
19012285 TAATACCATATCTGGGATATGG
66 TAAGACCATATCTGGGACATGG
19012307 AATTGGCAGT
Statistics
Matches: 71, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
100 71 1.00
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (100 bp):
ATGAGAGGTCCCACGTAAGACCATGTCTGAGACATGGCATGGGCACCGAGATGAAAACTCCCATG
TAAGACCATATCTGGGACATGGCGTTGGCACCAAG
Found at i:19018451 original size:22 final size:23
Alignment explanation
Indices: 19018426--19018479 Score: 76
Period size: 22 Copynumber: 2.4 Consensus size: 23
19018416 ACTAATGAAT
19018426 AGAGAGCACTA-AAGTGCTAAAC
1 AGAGAGCACTAGAAGTGCTAAAC
*
19018448 AGAGAGCAC-AGATGTGCTAAAC
1 AGAGAGCACTAGAAGTGCTAAAC
*
19018470 GGAGAGCACT
1 AGAGAGCACT
19018480 GTCGTGCTAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 1 0.04
22 27 0.96
ACGTcount: A:0.41, C:0.19, G:0.28, T:0.13
Consensus pattern (23 bp):
AGAGAGCACTAGAAGTGCTAAAC
Found at i:19020297 original size:21 final size:20
Alignment explanation
Indices: 19020260--19020330 Score: 110
Period size: 19 Copynumber: 3.6 Consensus size: 20
19020250 AATCACATCT
*
19020260 TCTAAGATTAC-ATATCATA
1 TCTAAGATTGCAATATCATA
19020279 TCTAAGATTGCAAATATCATA
1 TCTAAGATTGC-AATATCATA
19020300 TCTAAGATTGC-ATATCATA
1 TCTAAGATTGCAATATCATA
19020319 TCTAAGATTGCA
1 TCTAAGATTGCA
19020331 TAGCCTCGAA
Statistics
Matches: 48, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
19 29 0.60
21 19 0.40
ACGTcount: A:0.39, C:0.15, G:0.10, T:0.35
Consensus pattern (20 bp):
TCTAAGATTGCAATATCATA
Found at i:19020811 original size:128 final size:129
Alignment explanation
Indices: 19020615--19020866 Score: 303
Period size: 128 Copynumber: 2.0 Consensus size: 129
19020605 AGATGAATTT
* * * * *
19020615 GATGCGATCTGCTCTACTGTAATTTCATAGAGATAAGATCCATCATTCTAATCCACTCCGCTACA
1 GATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCCAACATTCTAATCCACTCCACTACA
* * *
19020680 ACTTTAGGGAGATAGGATT-T-GTTTATTTAGTCTGCTCCACTGCAACTTCAGAGAGATAAGACT
66 ACTTCAGGGAGATAGGATTATCG--GATTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGACT
19020743 A
129 A
* ** * * * * *
19020744 GATGCGTTCTGCTCT-CTGCAACTTCAGAGAGATAAGATCCAAGGTTTTAATTCGCTTCACTGCA
1 GATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCCAACATTCTAATCCACTCCACTACA
* *
19020808 ACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAA
66 ACTTCAGGGAGATAGGATTATCGGATTTAATCTGCTCCACTGCAACTTCAGAGAGATAA
19020867 AATTTGCCAT
Statistics
Matches: 103, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
128 87 0.84
129 15 0.15
130 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (129 bp):
GATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCCAACATTCTAATCCACTCCACTACA
ACTTCAGGGAGATAGGATTATCGGATTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGACTA
Found at i:19021406 original size:44 final size:45
Alignment explanation
Indices: 19021257--19021893 Score: 572
Period size: 44 Copynumber: 14.5 Consensus size: 45
19021247 AGTGATCAGT
* ** * *
19021257 GAAGATAGCAGGTCCCGTCTTCCTATATTGGTAG-GAAGTGGATC
1 GAAGATAGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATC
* * **
19021301 GAAGAT-GCAGATCTTGTCTTCCCATATTAGT-G-GCGGTAGATC
1 GAAGATAGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATC
* * * *
19021343 GAAGAAAGCAGATCTTGTCTTCATTTATTGG-CGTGAAGTAGATT
1 GAAGATAGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATC
* * *
19021387 GAAGATAGCATG-TCCTGTCTTCCTATATTGGTAG-GAAGTGGATC
1 GAAGATAGCA-GATCTTGTCTTCCTATATTGGTCGTGAAGTAGATC
* * *
19021431 GAAGAT-GCAGATCTTGTCTTCATGTATTAG-CGTGAAGTAGATC
1 GAAGATAGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATC
* * * * *
19021474 GAAGATAGTAGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATC
1 GAAGATAGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATC
* * *
19021519 GAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATC
1 GAAGATAGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATC
* * * * * *
19021563 GAAGAAAGCAGATATTGTCTTCATGTATTGG-CATAAAGTAGATC
1 GAAGATAGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATC
* * * * *
19021607 AAAGATAGCAGGTCCTGTCTTCCTATATTGGTAG-GAAGTGGATC
1 GAAGATAGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATC
* * * * *
19021651 GAAGAT-GCAGATCTTATCTTCCCATACTGGTGGCG-AGTAGATC
1 GAAGATAGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATC
* * * *
19021694 GAAGAAAGCAGATCTTGTCTTCATGTATTGG-CATGAAGTAGATC
1 GAAGATAGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATC
* * * * *
19021738 GAAAATAGCAGGTCCTGTCTTCCTATATTGGTAG-GAAGTGGATC
1 GAAGATAGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATC
* * * *
19021782 GAAGATA-CAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATC
1 GAAGATAGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATC
* * * * *
19021826 AAAGAAAGTAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATC
1 GAAGATAGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATC
* *
19021870 GAAGATAGTAGATCTTGCCTTCCT
1 GAAGATAGCAGATCTTGTCTTCCT
19021894 GCACCGACAG
Statistics
Matches: 468, Mismatches: 108, Indels: 34
0.77 0.18 0.06
Matches are distributed among these distances:
42 15 0.03
43 129 0.28
44 268 0.57
45 56 0.12
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (45 bp):
GAAGATAGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATC
Found at i:19021636 original size:220 final size:219
Alignment explanation
Indices: 19021257--19021802 Score: 735
Period size: 220 Copynumber: 2.5 Consensus size: 219
19021247 AGTGATCAGT
* *
19021257 GAAGATAGCAGGTCCCGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTC
1 GAAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTC
* * * *
19021322 CCATATTAGTGGCG--GTAGATCGAAGAAAGCAGATCTTGTCTTCATTTATTGGCGTGAAGTAGA
66 CCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCATAAAGTAGA
** * *
19021385 TTGAAGATAGCATGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCT
131 TCAAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTATCT
** *
19021450 TCATGTATTAGCGT-G-AAGTAGATC
196 TCACATACT-G-GTGGCAAGTAGATC
*
19021474 GAAGATAGTAGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTT
1 GAAGATAGCAGATCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGATGCAGATCTTGTCTT
*
19021539 CCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATATTGTCTTCATGTATTGGCATAAAGTAG
65 CCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCATAAAGTAG
19021604 ATCAAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTATC
130 ATCAAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTATC
* *
19021669 TTCCCATACTGGTGGCGAGTAGATC
195 TTCACATACTGGTGGCAAGTAGATC
* * * * * * * * * *
19021694 GAAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAAATAGCAGGTCCTGTCTT
1 GAAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGAT-GCAGATCTTGTCTT
* * * *
19021759 CCTATATTGGTAG-GAAGTGGATCGAAGATA-CAGATCTTGTCTTC
65 CCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTC
19021803 CCATACTGGT
Statistics
Matches: 290, Mismatches: 33, Indels: 11
0.87 0.10 0.03
Matches are distributed among these distances:
217 31 0.11
218 59 0.20
219 31 0.11
220 169 0.58
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (219 bp):
GAAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTC
CCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCATAAAGTAGA
TCAAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTATCT
TCACATACTGGTGGCAAGTAGATC
Found at i:19021733 original size:131 final size:132
Alignment explanation
Indices: 19021336--19021877 Score: 736
Period size: 131 Copynumber: 4.1 Consensus size: 132
19021326 ATTAGTGGCG
* * * * * * * * *
19021336 GTAGATCGAAGAAAGCAGATCTTGTCTTCATTTATTGG-CGTGAAGTAGATTGAAGATAGCATG-
1 GTAGATCAAAGATAGCAGGTCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGAT-GCA-GA
* * * * * * *
19021399 TCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAG-ATGCAGATCTTGTCTTCATGTATTAGC
63 TCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
*
19021462 GTGAA
128 ATGAA
* * *
19021467 GTAGATCGAAGATAGTAGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGATGCAGATC
1 GTAGATCAAAGATAGCAGGTCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGATGCAGATC
* *
19021532 TTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATATTGTCTTCATGTATTGGCAT
65 TTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCAT
*
19021597 AAA
130 GAA
19021600 GTAGATCAAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCT
1 GTAGATCAAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCT
*
19021665 TATCTTCCCATACTGGTGGCG-AGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCATG
66 TGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCATG
19021729 AA
131 AA
*
19021731 GTAGATCGAAA-ATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATACAGATC
1 GTAGATC-AAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATC
* * *
19021795 TTGTCTTCCCATACTGGTGGCGAAGTAGATCAAAGAAAGTAGATCTTGTCTTCATGTATTGGCGT
65 TTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCAT
19021860 GAA
130 GAA
*
19021863 GTAGATCGAAGATAG
1 GTAGATCAAAGATAG
19021878 TAGATCTTGC
Statistics
Matches: 373, Mismatches: 31, Indels: 13
0.89 0.07 0.03
Matches are distributed among these distances:
130 1 0.00
131 180 0.48
132 127 0.34
133 65 0.17
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (132 bp):
GTAGATCAAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCT
TGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCATG
AA
Found at i:19022181 original size:45 final size:46
Alignment explanation
Indices: 19022015--19022184 Score: 192
Period size: 44 Copynumber: 3.8 Consensus size: 46
19022005 TGACCTCAGC
* * * *
19022015 CCTATCTCCTTGGT-TAGTAGTAGAATAGGTTAAAGATTGT-GAAT
1 CCTATCTCCCTGGTCAAGTAGTGGAATAGGTTGAAGATTGTAGAAT
* *
19022059 CCTATCTCCCTGGTCAA-CAGTGGAATAGGGTGAAGATTG-AGAAT
1 CCTATCTCCCTGGTCAAGTAGTGGAATAGGTTGAAGATTGTAGAAT
* * * *
19022103 TCTATCTCCCTGGGC-AGTAGTGGAAT-GGATTGAATATTGTAG-GT
1 CCTATCTCCCTGGTCAAGTAGTGGAATAGG-TTGAAGATTGTAGAAT
19022147 CCTATCTCCCTGGTCAAGTAGTGGAATAGGTTGAAGAT
1 CCTATCTCCCTGGTCAAGTAGTGGAATAGGTTGAAGAT
19022185 CGTGAACCCA
Statistics
Matches: 104, Mismatches: 15, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
43 3 0.03
44 78 0.75
45 21 0.20
46 2 0.02
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.31
Consensus pattern (46 bp):
CCTATCTCCCTGGTCAAGTAGTGGAATAGGTTGAAGATTGTAGAAT
Found at i:19073107 original size:40 final size:40
Alignment explanation
Indices: 19073070--19073255 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
19073060 GCTACTCGTT
* *
19073070 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
19073110 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
19073150 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
19073190 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
19073231 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
19073256 CATCATTCAA
Statistics
Matches: 133, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
39 3 0.02
40 117 0.88
41 13 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:19075871 original size:71 final size:71
Alignment explanation
Indices: 19075781--19075929 Score: 262
Period size: 71 Copynumber: 2.1 Consensus size: 71
19075771 GGATACTAAA
* *
19075781 ACATATAAGCTTTCTACAGGTTAAGGGGTGTCTGTATCATCTCAGCATATCAAATCAATAATGTG
1 ACATGTAAGCTTTCTACAGGTTAAGGGGTGTCTCTATCATCTCAGCATATCAAATCAATAATGTG
19075846 GTCTCG
66 GTCTCG
* *
19075852 ACATGTAAGCTTTTTACAGGTTAAGGGGTGTCTCTATCATCTCAGCATATCAAATCTATAATGTG
1 ACATGTAAGCTTTCTACAGGTTAAGGGGTGTCTCTATCATCTCAGCATATCAAATCAATAATGTG
19075917 GTCTCG
66 GTCTCG
19075923 ACATGTA
1 ACATGTA
19075930 TAACTGAAGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
71 74 1.00
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34
Consensus pattern (71 bp):
ACATGTAAGCTTTCTACAGGTTAAGGGGTGTCTCTATCATCTCAGCATATCAAATCAATAATGTG
GTCTCG
Found at i:19077610 original size:116 final size:116
Alignment explanation
Indices: 19077406--19077638 Score: 403
Period size: 116 Copynumber: 2.0 Consensus size: 116
19077396 TATGTCCGAC
* *
19077406 CAATAGAAAGAGGTCGAGTGATGGATGTGTCATAGGAGGAAGAAGAACTTGGTCATGGCTAAAAA
1 CAATAGAAAGAGGTCGAGTGATGGATGTGTCATAAGAGGAAGAAGAACTCGGTCATGGCTAAAAA
19077471 ATCATCAGAATATAAGCTGAGAGTGACACCAAAGCCTGCAATAGTAAAATG
66 ATCATCAGAATATAAGCTGAGAGTGACACCAAAGCCTGCAATAGTAAAATG
* *
19077522 CAATAGAAAGAGGTCGAGTGATGGATGTGTCGTAAGAGGAGGAAGAACTCGGTCATGGCTAAAAA
1 CAATAGAAAGAGGTCGAGTGATGGATGTGTCATAAGAGGAAGAAGAACTCGGTCATGGCTAAAAA
* * *
19077587 ATCATTAGAATATAGGTTGAGAGTGACACCAAAGCCTGCAATAGTAAAATG
66 ATCATCAGAATATAAGCTGAGAGTGACACCAAAGCCTGCAATAGTAAAATG
19077638 C
1 C
19077639 CGAGTGATAG
Statistics
Matches: 110, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
116 110 1.00
ACGTcount: A:0.39, C:0.13, G:0.27, T:0.20
Consensus pattern (116 bp):
CAATAGAAAGAGGTCGAGTGATGGATGTGTCATAAGAGGAAGAAGAACTCGGTCATGGCTAAAAA
ATCATCAGAATATAAGCTGAGAGTGACACCAAAGCCTGCAATAGTAAAATG
Found at i:19078178 original size:9 final size:9
Alignment explanation
Indices: 19078121--19078231 Score: 64
Period size: 9 Copynumber: 12.2 Consensus size: 9
19078111 CTGCAGTGAT
19078121 AATAATAAA
1 AATAATAAA
* *
19078130 TATAATACA
1 AATAATAAA
*
19078139 AAGAATAAA
1 AATAATAAA
* * *
19078148 GACAATAAC
1 AATAATAAA
* **
19078157 AATAGTAGT
1 AATAATAAA
19078166 AATAATAAA
1 AATAATAAA
*
19078175 AATAAAAATA
1 AATAATAA-A
*
19078185 ACATAATAAT
1 A-ATAATAAA
*
19078195 AATACT-AA
1 AATAATAAA
19078203 AATAA-AACA
1 AATAATAA-A
19078212 AATAATAAA
1 AATAATAAA
*
19078221 AATACTAAA
1 AATAATAAA
19078230 AA
1 AA
19078232 GGAAAGGGAG
Statistics
Matches: 74, Mismatches: 23, Indels: 10
0.69 0.21 0.09
Matches are distributed among these distances:
8 6 0.08
9 57 0.77
10 5 0.07
11 6 0.08
ACGTcount: A:0.68, C:0.06, G:0.04, T:0.22
Consensus pattern (9 bp):
AATAATAAA
Found at i:19078195 original size:23 final size:24
Alignment explanation
Indices: 19078165--19078224 Score: 79
Period size: 23 Copynumber: 2.6 Consensus size: 24
19078155 ACAATAGTAG
*
19078165 TAATAATAAAAATAAAA-ATAACA
1 TAATAATAAAAATAAAATAAAACA
* *
19078188 TAATAATAATACTAAAATAAAACA
1 TAATAATAAAAATAAAATAAAACA
19078212 -AATAATAAAAATA
1 TAATAATAAAAATA
19078225 CTAAAAAGGA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
23 26 0.84
24 5 0.16
ACGTcount: A:0.72, C:0.05, G:0.00, T:0.23
Consensus pattern (24 bp):
TAATAATAAAAATAAAATAAAACA
Found at i:19078216 original size:26 final size:28
Alignment explanation
Indices: 19078165--19078230 Score: 86
Period size: 26 Copynumber: 2.5 Consensus size: 28
19078155 ACAATAGTAG
*
19078165 TAATAATA--AAAATAAAAATAACATAA
1 TAATAATACTAAAATAAAAACAACATAA
19078191 TAATAATACTAAAAT-AAAACAA-ATAA
1 TAATAATACTAAAATAAAAACAACATAA
*
19078217 TAAAAATACTAAAA
1 TAATAATACTAAAA
19078231 AGGAAAGGGA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
26 25 0.69
27 6 0.17
28 5 0.14
ACGTcount: A:0.71, C:0.06, G:0.00, T:0.23
Consensus pattern (28 bp):
TAATAATACTAAAATAAAAACAACATAA
Found at i:19078647 original size:22 final size:22
Alignment explanation
Indices: 19078622--19078664 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
19078612 TATCCAAACA
19078622 ATAACAATAAAATAGTAGCAAC
1 ATAACAATAAAATAGTAGCAAC
* * *
19078644 ATAATAGTAAAATGGTAGCAA
1 ATAACAATAAAATAGTAGCAA
19078665 AATAGGGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.56, C:0.09, G:0.14, T:0.21
Consensus pattern (22 bp):
ATAACAATAAAATAGTAGCAAC
Found at i:19081483 original size:40 final size:40
Alignment explanation
Indices: 19081428--19081562 Score: 171
Period size: 40 Copynumber: 3.4 Consensus size: 40
19081418 ACTATGTTTA
*
19081428 GCACTTAGTGTGCGATTCGAGATAGCTTCGGCTATTTATG
1 GCACTTAGTGTGCGATTCGAGATAGCTTCGGCTATATATG
* * *
19081468 GCACTTAGTGTGCGATTGGAAATAGCTTCAGCTATATATG
1 GCACTTAGTGTGCGATTCGAGATAGCTTCGGCTATATATG
** * * *
19081508 GCACTTAGTGTGCGAGACTGAGATAACTTCGGCTATGTAAG
1 GCACTTAGTGTGCGATTC-GAGATAGCTTCGGCTATATATG
*
19081549 ACACTTAGTGTGCG
1 GCACTTAGTGTGCG
19081563 GGGTGATAAT
Statistics
Matches: 81, Mismatches: 13, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
40 51 0.63
41 30 0.37
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.31
Consensus pattern (40 bp):
GCACTTAGTGTGCGATTCGAGATAGCTTCGGCTATATATG
Found at i:19081555 original size:41 final size:41
Alignment explanation
Indices: 19081428--19081602 Score: 151
Period size: 40 Copynumber: 4.3 Consensus size: 41
19081418 ACTATGTTTA
** *
19081428 GCACTTAGTGTGCGATTC-GAGATAGCTTCGGCTATTTATG
1 GCACTTAGTGTGCGAGACTGAGATAGCTTCGGCTATATATG
* * *
19081468 GCACTTAGTGTGC--GATTGGAAATAGCTTCAGCTATATATG
1 GCACTTAGTGTGCGAGACT-GAGATAGCTTCGGCTATATATG
* * *
19081508 GCACTTAGTGTGCGAGACTGAGATAACTTCGGCTATGTAAG
1 GCACTTAGTGTGCGAGACTGAGATAGCTTCGGCTATATATG
* ** * **
19081549 ACACTTAGTGTGCG-GGGTGATAATAGCTTCGGCTATGCGATG
1 GCACTTAGTGTGCGAGACTGA-GATAGCTTCGGCTAT-ATATG
*
19081591 GCATTTAGTGTG
1 GCACTTAGTGTG
19081603 TGAAACATTG
Statistics
Matches: 107, Mismatches: 22, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
40 49 0.46
41 43 0.40
42 15 0.14
ACGTcount: A:0.23, C:0.16, G:0.29, T:0.31
Consensus pattern (41 bp):
GCACTTAGTGTGCGAGACTGAGATAGCTTCGGCTATATATG
Found at i:19084147 original size:20 final size:20
Alignment explanation
Indices: 19084122--19084159 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
19084112 GACTATACAA
*
19084122 ATTAAATTAAAAACAAAACT
1 ATTAAAATAAAAACAAAACT
*
19084142 ATTAAAATAAAAATAAAA
1 ATTAAAATAAAAACAAAA
19084160 ATAGCTAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.71, C:0.05, G:0.00, T:0.24
Consensus pattern (20 bp):
ATTAAAATAAAAACAAAACT
Found at i:19087300 original size:17 final size:16
Alignment explanation
Indices: 19087278--19087317 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 16
19087268 TCTATTATTT
*
19087278 TATATACATATTGTACA
1 TATATACATATT-TAAA
19087295 TATATACATATTTAAA
1 TATATACATATTTAAA
19087311 TATATAC
1 TATATAC
19087318 GAATGCGAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 10 0.45
17 12 0.55
ACGTcount: A:0.45, C:0.10, G:0.03, T:0.42
Consensus pattern (16 bp):
TATATACATATTTAAA
Found at i:19090637 original size:41 final size:40
Alignment explanation
Indices: 19090560--19090753 Score: 203
Period size: 41 Copynumber: 4.7 Consensus size: 40
19090550 ACCTTTCGAG
* * *
19090560 GCTTTAGCGGCGTTTTTTAAAAAGCGTCGCTGATGCTCAGA
1 GCTTTAGCGGCG-TTTTTGAAAAGCGCCGCTAATGCTCAGA
* *
19090601 TCTTTAGTGGCGTTTTTGAAAATGCGCCGCTAATGCTCAGA
1 GCTTTAGCGGCGTTTTTGAAAA-GCGCCGCTAATGCTCAGA
* * * *
19090642 TCTTTAGCGGCGCTTTTTCAAAAACGCCGCTAATGCTC-GG
1 GCTTTAGCGGCG-TTTTTGAAAAGCGCCGCTAATGCTCAGA
* * *
19090682 GCTTTTAGTGGCGTTTTTGAAAAAGCGCCACTAATGCTTAG-
1 GC-TTTAGCGGCGTTTTTG-AAAAGCGCCGCTAATGCTCAGA
19090723 GCTTTTAGCGGCGTTTTTAGAAAAGCGCCGC
1 GC-TTTAGCGGCGTTTTT-GAAAAGCGCCGC
19090754 CAAAAATATT
Statistics
Matches: 130, Mismatches: 17, Indels: 12
0.82 0.11 0.08
Matches are distributed among these distances:
40 16 0.12
41 103 0.79
42 11 0.08
ACGTcount: A:0.22, C:0.21, G:0.25, T:0.32
Consensus pattern (40 bp):
GCTTTAGCGGCGTTTTTGAAAAGCGCCGCTAATGCTCAGA
Found at i:19090698 original size:82 final size:80
Alignment explanation
Indices: 19090558--19090753 Score: 243
Period size: 82 Copynumber: 2.4 Consensus size: 80
19090548 TGACCTTTCG
* *
19090558 AGGCTTTAGCGGCGTTTTTTAAAAAGCGTCGCTGATGCTCAGATCTTTAGTGGCGTTTTTGAAAA
1 AGGCTTTAGCGGCG-TTTTTAAAAAGCGCCGCTAATGCTCAGATCTTTAGTGGCGTTTTTGAAAA
* *
19090623 TGCGCCGCTAATGCTC
65 AGCGCCACTAATGCTC
* **
19090639 AGATCTTTAGCGGCGCTTTTTCAAAAA-CGCCGCTAATGCTC-GGGCTTTTAGTGGCGTTTTTGA
1 AG-GCTTTAGCGGCG-TTTTT-AAAAAGCGCCGCTAATGCTCAGATC-TTTAGTGGCGTTTTTGA
*
19090702 AAAAGCGCCACTAATGCTT
62 AAAAGCGCCACTAATGCTC
19090721 AGGCTTTTAGCGGCGTTTTTAGAAAAGCGCCGC
1 AGGC-TTTAGCGGCGTTTTTA-AAAAGCGCCGC
19090754 CAAAAATATT
Statistics
Matches: 99, Mismatches: 10, Indels: 11
0.82 0.08 0.09
Matches are distributed among these distances:
80 1 0.01
81 14 0.14
82 79 0.80
83 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.32
Consensus pattern (80 bp):
AGGCTTTAGCGGCGTTTTTAAAAAGCGCCGCTAATGCTCAGATCTTTAGTGGCGTTTTTGAAAAA
GCGCCACTAATGCTC
Found at i:19091022 original size:14 final size:14
Alignment explanation
Indices: 19091012--19091048 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
19091002 GGGTTTAATA
*
19091012 TATATGGTTTAGGG
1 TATATGGTTTAAGG
19091026 TATATGGTTTAAGG
1 TATATGGTTTAAGG
19091040 TATATGGTT
1 TATATGGTT
19091049 AATTTAGGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.24, C:0.00, G:0.30, T:0.46
Consensus pattern (14 bp):
TATATGGTTTAAGG
Found at i:19091125 original size:14 final size:14
Alignment explanation
Indices: 19091106--19091172 Score: 55
Period size: 14 Copynumber: 4.8 Consensus size: 14
19091096 AGATTATGAA
19091106 ATTAGGGATTATGG
1 ATTAGGGATTATGG
*
19091120 ATTAGGGATTTTGG
1 ATTAGGGATTATGG
* * *
19091134 TTTAGGGGTTAGGG
1 ATTAGGGATTATGG
*
19091148 GTTAGTGG-TTATGG
1 ATTAG-GGATTATGG
* *
19091162 GTTAGAGATTA
1 ATTAGGGATTA
19091173 AGAGTTAGTG
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
13 1 0.02
14 40 0.93
15 2 0.05
ACGTcount: A:0.22, C:0.00, G:0.39, T:0.39
Consensus pattern (14 bp):
ATTAGGGATTATGG
Found at i:19091320 original size:74 final size:76
Alignment explanation
Indices: 19091209--19091351 Score: 227
Period size: 74 Copynumber: 1.9 Consensus size: 76
19091199 TTTGATGTTA
* *
19091209 GGTTAGGGTTTAAGGTTTAGATTAATTAGTGTGTTTTAA-TT-TATATTAAATAATGTTTAGGGG
1 GGTTAGGGTTTAAGGTTTAGATTAATTAGTATGTTTTAATTTATATATTAAATAAGGTTTAGGGG
19091272 TTAGGGATTTG
66 TTAGGGATTTG
* * *
19091283 GGTTAGGGTTTAGGGTTTAGATTAATTTGTATTTTTTAATTTATATATTAAATAAGGTTTAGGGG
1 GGTTAGGGTTTAAGGTTTAGATTAATTAGTATGTTTTAATTTATATATTAAATAAGGTTTAGGGG
19091348 TTAG
66 TTAG
19091352 TAGTTAGGGG
Statistics
Matches: 62, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
74 35 0.56
75 2 0.03
76 25 0.40
ACGTcount: A:0.27, C:0.00, G:0.26, T:0.47
Consensus pattern (76 bp):
GGTTAGGGTTTAAGGTTTAGATTAATTAGTATGTTTTAATTTATATATTAAATAAGGTTTAGGGG
TTAGGGATTTG
Found at i:19091505 original size:7 final size:7
Alignment explanation
Indices: 19091489--19091543 Score: 65
Period size: 7 Copynumber: 7.7 Consensus size: 7
19091479 AATTGTAAAA
*
19091489 TAGGGAT
1 TAGGGGT
19091496 TAGGGGT
1 TAGGGGT
*
19091503 TAGGAGT
1 TAGGGGT
*
19091510 TAGAGGT
1 TAGGGGT
*
19091517 CAGGGGT
1 TAGGGGT
19091524 TAGGGGT
1 TAGGGGT
19091531 TAGGGGTT
1 TAGGGG-T
19091539 TAGGG
1 TAGGG
19091544 TTTATGTTTT
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
7 34 0.85
8 6 0.15
ACGTcount: A:0.20, C:0.02, G:0.51, T:0.27
Consensus pattern (7 bp):
TAGGGGT
Found at i:19096499 original size:15 final size:15
Alignment explanation
Indices: 19096479--19096509 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
19096469 GAGTTGAAAG
19096479 TGAAGAAGAAGATGA
1 TGAAGAAGAAGATGA
*
19096494 TGAAGATGAAGATGA
1 TGAAGAAGAAGATGA
19096509 T
1 T
19096510 CCATATCCCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.32, T:0.19
Consensus pattern (15 bp):
TGAAGAAGAAGATGA
Found at i:19096822 original size:43 final size:43
Alignment explanation
Indices: 19096752--19097024 Score: 331
Period size: 43 Copynumber: 6.3 Consensus size: 43
19096742 TAATAGTACT
19096752 TTTAGCGGCGTTTGT--AATTAAAGCGTCGCTAAAGGTCTTGAG-C
1 TTTAGCGGCGTTTGTGGAA--AAAGCGTCGCTAAAGGTCTTG-GTC
* * * * *
19096795 TATAGCGGTGTTTGTGGAAAAAACGTCGCTATAGGTCTGGGTC
1 TTTAGCGGCGTTTGTGGAAAAAGCGTCGCTAAAGGTCTTGGTC
* * *
19096838 TTTAGCGGCGTTTGTGAAAAAAGTGCCGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTGGAAAAAGCGTCGCTAAAGGTCTTGGTC
19096881 TTTAGCGGCGTTTGTAGG-AAAAGCGTCGCTAAAGGTGC-TGGTC
1 TTTAGCGGCGTTTGT-GGAAAAAGCGTCGCTAAAGGT-CTTGGTC
* * * *
19096924 TTTAGCGGCGTTTGTGGGAAAAGTGCCGCTAAAGGTCCTGGTC
1 TTTAGCGGCGTTTGTGGAAAAAGCGTCGCTAAAGGTCTTGGTC
* * *
19096967 TTTAACGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTGGAAAAAGCGTCGCTAAAGGTCTTGGTC
19097010 TTTAGCGGCGTTTGT
1 TTTAGCGGCGTTTGT
19097025 TTCTAAAAAC
Statistics
Matches: 201, Mismatches: 22, Indels: 14
0.85 0.09 0.06
Matches are distributed among these distances:
42 4 0.02
43 193 0.96
44 2 0.01
45 2 0.01
ACGTcount: A:0.21, C:0.16, G:0.32, T:0.30
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGAAAAAGCGTCGCTAAAGGTCTTGGTC
Found at i:19096982 original size:129 final size:129
Alignment explanation
Indices: 19096752--19097024 Score: 372
Period size: 129 Copynumber: 2.1 Consensus size: 129
19096742 TAATAGTACT
** *
19096752 TTTAGCGGCGTTTGTAATTAAAGCGTCGCTAAAGGTCTTGAGCTATAGCGGTGTTTGTGGAAAAA
1 TTTAGCGGCGTTTGTAAGAAAAGCGTCGCTAAAGGTCTTGAGCTATAGCGGCGTTTGTGGAAAAA
* * * *
19096817 ACGTCGCTATAGGTCTGGGTCTTTAGCGGCGTTTGTGAAAAAAGTGCCGCTAAAGGTCTTGGTC
66 ACGCCGCTAAAGGTCTGGGTCTTTAACGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCTTGGTC
* * *
19096881 TTTAGCGGCGTTTGTAGGAAAAGCGTCGCTAAAGGTGC-TG-GTCTTTAGCGGCGTTTGTGGGAA
1 TTTAGCGGCGTTTGTAAGAAAAGCGTCGCTAAAGGT-CTTGAG-CTATAGCGGCGTTTGTGGAAA
** **
19096944 AAGTGCCGCTAAAGGTCCT-GGTCTTTAACGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGG
64 AAACGCCGCTAAAGGT-CTGGGTCTTTAACGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCTTGG
19097008 TC
128 TC
19097010 TTTAGCGGCGTTTGT
1 TTTAGCGGCGTTTGT
19097025 TTCTAAAAAC
Statistics
Matches: 127, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
128 1 0.01
129 123 0.97
130 3 0.02
ACGTcount: A:0.21, C:0.16, G:0.32, T:0.30
Consensus pattern (129 bp):
TTTAGCGGCGTTTGTAAGAAAAGCGTCGCTAAAGGTCTTGAGCTATAGCGGCGTTTGTGGAAAAA
ACGCCGCTAAAGGTCTGGGTCTTTAACGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCTTGGTC
Found at i:19097564 original size:16 final size:15
Alignment explanation
Indices: 19097528--19097556 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
19097518 GAGTATAGTA
19097528 AAATATTTAAAAAAT
1 AAATATTTAAAAAAT
19097543 AAATATTTAAAAAA
1 AAATATTTAAAAAA
19097557 AGAGATATCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
AAATATTTAAAAAAT
Found at i:19098447 original size:23 final size:23
Alignment explanation
Indices: 19098403--19098447 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
19098393 AACAAAATGT
* **
19098403 AAAAATTAGAAATTATTTTGTAA
1 AAAAATTAGAAAATATAATGTAA
*
19098426 AAAAATTATAAAATATAATGTA
1 AAAAATTAGAAAATATAATGTA
19098448 GCCTTTAATC
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.58, C:0.00, G:0.07, T:0.36
Consensus pattern (23 bp):
AAAAATTAGAAAATATAATGTAA
Found at i:19098752 original size:30 final size:29
Alignment explanation
Indices: 19098688--19098760 Score: 78
Period size: 30 Copynumber: 2.5 Consensus size: 29
19098678 TAAAGGCGCA
*
19098688 TTTTTTT-TAAATTTTTAAAAAATTAGCT
1 TTTTTTTGTAAATTTTTAAAAAATGAGCT
* *
19098716 TATTTTTGTAAATCTTTTTAAAAATGA-CAT
1 TTTTTTTGTAAAT-TTTTAAAAAATGAGC-T
*
19098746 TTTTTTTGGAAATTT
1 TTTTTTTGTAAATTT
19098761 AGTTATTGAC
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
28 6 0.16
29 8 0.22
30 23 0.62
ACGTcount: A:0.33, C:0.04, G:0.07, T:0.56
Consensus pattern (29 bp):
TTTTTTTGTAAATTTTTAAAAAATGAGCT
Found at i:19105159 original size:107 final size:107
Alignment explanation
Indices: 19104970--19105187 Score: 382
Period size: 107 Copynumber: 2.0 Consensus size: 107
19104960 AATCTGGACG
*
19104970 TGAACAAACCATAGCATACATGAGAGATCCCATTGCACTAGAGTATGGAACATGTGACATGTACT
1 TGAACAAACCATAGCATACATGAGAGATCCCACTGCACTAGAGTATGGAACATGTGACATGTACT
* * *
19105035 CAATCTTATCATCTGATTGTGGAGACAAAGCCGATGAAAGTT
66 CAATCTCATCATCTGATTATGAAGACAAAGCCGATGAAAGTT
*
19105077 TGAACAAACCATAGCATACATGAGAGATCCCACTGCACTAGATTATGGAACATGTGACATGTACT
1 TGAACAAACCATAGCATACATGAGAGATCCCACTGCACTAGAGTATGGAACATGTGACATGTACT
*
19105142 CAATCTCATCATTTGATTATGAAGACAAAGCCGATGAAAGTT
66 CAATCTCATCATCTGATTATGAAGACAAAGCCGATGAAAGTT
19105184 TGAA
1 TGAA
19105188 ATGGGCTGCT
Statistics
Matches: 105, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
107 105 1.00
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (107 bp):
TGAACAAACCATAGCATACATGAGAGATCCCACTGCACTAGAGTATGGAACATGTGACATGTACT
CAATCTCATCATCTGATTATGAAGACAAAGCCGATGAAAGTT
Found at i:19110742 original size:61 final size:61
Alignment explanation
Indices: 19110669--19110862 Score: 186
Period size: 61 Copynumber: 3.2 Consensus size: 61
19110659 TTATAGTATC
19110669 ATATATTATAATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 ATATATTATAATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
* * * * * * *
19110730 ATATATTTTAATTAT-AATATATTTA-ATAATAATTATGTTAA--ATT-A-TATTTTA-TAGTAT
1 ATATATTATAATT-TGAGTAAATTCATATAAGAA-TA--TTAATTATTAAGAATTTTATTA-AAT
*
19110788 C
61 T
* * *
19110789 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATAAAGAATTTTATTAAATT
1 ATATATTATAATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
*
19110850 ATATATTTTAATT
1 ATATATTATAATT
19110863 ATAATATATT
Statistics
Matches: 100, Mismatches: 21, Indels: 24
0.69 0.14 0.17
Matches are distributed among these distances:
57 3 0.03
58 3 0.03
59 30 0.30
60 14 0.14
61 43 0.43
62 3 0.03
63 4 0.04
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (61 bp):
ATATATTATAATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
Found at i:19110751 original size:16 final size:16
Alignment explanation
Indices: 19110730--19110776 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
19110720 TTATTAAATT
19110730 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
19110746 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
*
19110761 AT-TATGTTAAATTATA
1 ATATAT-TTTAATTATA
19110777 TTTTATAGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 2 0.08
15 11 0.42
16 13 0.50
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:19110775 original size:120 final size:120
Alignment explanation
Indices: 19110636--19110893 Score: 471
Period size: 120 Copynumber: 2.1 Consensus size: 120
19110626 GGCAGTTGTC
*
19110636 TAATAATTATGTTAAATTATCTTTTATAGTATCATATATTATAATTTGAGTAAATTCATATAAGA
1 TAATAATTATGTTAAATTATATTTTATAGTATCATATATTATAATTTGAGTAAATTCATATAAGA
*
19110701 ATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAA
66 ATATTAATTATAAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAA
*
19110756 TAATAATTATGTTAAATTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGA
1 TAATAATTATGTTAAATTATATTTTATAGTATCATATATTATAATTTGAGTAAATTCATATAAGA
*
19110821 ATATTGATTATAAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAA
66 ATATTAATTATAAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAA
19110876 TAATAATTATGTTTAAAT
1 TAATAATTATG-TTAAAT
19110894 ATGATTAAAT
Statistics
Matches: 133, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
120 127 0.95
121 6 0.05
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (120 bp):
TAATAATTATGTTAAATTATATTTTATAGTATCATATATTATAATTTGAGTAAATTCATATAAGA
ATATTAATTATAAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAA
Found at i:19110871 original size:16 final size:16
Alignment explanation
Indices: 19110850--19110891 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
19110840 TTATTAAATT
*
19110850 ATATATTTTAATTATA
1 ATATATTTTAATAATA
19110866 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
19110881 AT-TATGTTTAA
1 ATATAT-TTTAA
19110892 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:19110876 original size:15 final size:15
Alignment explanation
Indices: 19110841--19110882 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
19110831 TAAAGAATTT
*
19110841 TATTAAATTAT-ATA
1 TATTTAATTATAATA
19110855 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
19110869 TATTTAATAATAAT
1 TATTTAATTATAAT
19110883 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:19111075 original size:39 final size:40
Alignment explanation
Indices: 19111021--19111125 Score: 115
Period size: 44 Copynumber: 2.5 Consensus size: 40
19111011 TTCCATTATG
19111021 CTATTACACCTCTATTCCATTCAACCAAACACA-TGA-ATA
1 CTATTACACCTCTATTCCATTCAACCAAACA-ATTGATATA
* * *
19111060 CTATTACGCCTCTATTGCATTACATTCAACCAAACAATTGATTTG
1 CTATTACACCTCTATT-C----CATTCAACCAAACAATTGATATA
19111105 CTATTACACCTCTATTCCATT
1 CTATTACACCTCTATTCCATT
19111126 ACACCTCTAT
Statistics
Matches: 55, Mismatches: 4, Indels: 13
0.76 0.06 0.18
Matches are distributed among these distances:
39 15 0.27
40 5 0.09
43 1 0.02
44 18 0.33
45 16 0.29
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (40 bp):
CTATTACACCTCTATTCCATTCAACCAAACAATTGATATA
Found at i:19111119 original size:45 final size:43
Alignment explanation
Indices: 19111018--19111128 Score: 124
Period size: 45 Copynumber: 2.6 Consensus size: 43
19111008 TTTTTCCATT
19111018 ATGCTATTACACCTCTATTC----CATTCAACCAAACACATGA
1 ATGCTATTACACCTCTATTCATTACATTCAACCAAACACATGA
* *
19111057 ATACTATTACGCCTCTATTGCATTACATTCAACCAAACA-ATTGA
1 ATGCTATTACACCTCTATT-CATTACATTCAACCAAACACA-TGA
*
19111101 TTTGCTATTACACCTCTATTCCATTACA
1 -ATGCTATTACACCTCTATT-CATTACA
19111129 CCTCTATTCC
Statistics
Matches: 59, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
39 17 0.29
40 1 0.02
43 1 0.02
44 17 0.29
45 23 0.39
ACGTcount: A:0.33, C:0.28, G:0.05, T:0.33
Consensus pattern (43 bp):
ATGCTATTACACCTCTATTCATTACATTCAACCAAACACATGA
Found at i:19111128 original size:16 final size:16
Alignment explanation
Indices: 19111107--19111160 Score: 99
Period size: 16 Copynumber: 3.4 Consensus size: 16
19111097 TTGATTTGCT
19111107 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
19111123 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
*
19111139 ATTACGCCTCTATTCC
1 ATTACACCTCTATTCC
19111155 ATTACA
1 ATTACA
19111161 GCGAACCAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 36 1.00
ACGTcount: A:0.26, C:0.35, G:0.02, T:0.37
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Found at i:19113041 original size:10 final size:9
Alignment explanation
Indices: 19113004--19113039 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
19112994 TTTCTTTTCT
*
19113004 TTTTATAAT
1 TTTTATAAA
*
19113013 TTTTATATA
1 TTTTATAAA
19113022 TTTTATAAA
1 TTTTATAAA
19113031 TTTTATAAA
1 TTTTATAAA
19113040 ATCTTATGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (9 bp):
TTTTATAAA
Found at i:19117209 original size:3 final size:3
Alignment explanation
Indices: 19117197--19117280 Score: 57
Period size: 3 Copynumber: 28.3 Consensus size: 3
19117187 TTTGTTGTTG
* * * *
19117197 TTA TTG TTA TTA TTA TTA TTA TTA TTA TTA -CA CTA TTG TTA TTA TT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
19117243 TTCA TTA TAA TATA TT- TTA CTA TTA TTC TTA GTA TTA T
1 TT-A TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA T
19117281 AGATAACTAT
Statistics
Matches: 61, Mismatches: 15, Indels: 10
0.71 0.17 0.12
Matches are distributed among these distances:
2 5 0.08
3 52 0.85
4 4 0.07
ACGTcount: A:0.30, C:0.06, G:0.04, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:19121849 original size:15 final size:15
Alignment explanation
Indices: 19121829--19121864 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
19121819 ATGAGATTAA
*
19121829 AAAAATCAAAAAATT
1 AAAAATCAAAAAAAT
19121844 AAAAATCAAAAAAAT
1 AAAAATCAAAAAAAT
19121859 AAAAAT
1 AAAAAT
19121865 GATGGAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.78, C:0.06, G:0.00, T:0.17
Consensus pattern (15 bp):
AAAAATCAAAAAAAT
Found at i:19121889 original size:17 final size:17
Alignment explanation
Indices: 19121869--19121913 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 17
19121859 AAAAATGATG
19121869 GAAAAAT-AAAAGAAAA
1 GAAAAATGAAAAGAAAA
19121885 TGAAAAATGAAAAGAAAA
1 -GAAAAATGAAAAGAAAA
*
19121903 GAAAAAGGAAA
1 GAAAAATGAAA
19121914 GGCCAAGGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
17 17 0.65
18 9 0.35
ACGTcount: A:0.76, C:0.00, G:0.18, T:0.07
Consensus pattern (17 bp):
GAAAAATGAAAAGAAAA
Found at i:19121891 original size:18 final size:18
Alignment explanation
Indices: 19121852--19121908 Score: 57
Period size: 17 Copynumber: 3.3 Consensus size: 18
19121842 TTAAAAATCA
**
19121852 AAAAAATAAAA-ATGATG
1 AAAAAATAAAAGAAAATG
*
19121869 GAAAAATAAAAGAAAATG
1 AAAAAATAAAAGAAAATG
19121887 -AAAAATGAAAAGAAAA-G
1 AAAAAAT-AAAAGAAAATG
19121904 AAAAA
1 AAAAA
19121909 GGAAAGGCCA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
17 17 0.50
18 17 0.50
ACGTcount: A:0.75, C:0.00, G:0.14, T:0.11
Consensus pattern (18 bp):
AAAAAATAAAAGAAAATG
Found at i:19124227 original size:45 final size:45
Alignment explanation
Indices: 19124177--19124451 Score: 325
Period size: 45 Copynumber: 6.1 Consensus size: 45
19124167 GGAGTAGGTT
* * *
19124177 GAAGATAGCAGATCTTGTCTTCCTGTATTAGCAGTGAAGTAGATC
1 GAAGATAACAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC
* * * *
19124222 AAAGATAATAGATCTTGTCTTTCTGTATTGGCAGCGAAGTAGATT
1 GAAGATAACAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC
* * * *
19124267 GAAGATAGCAGATCTTGTCTTCCTGTATTGGCACCAAAGTAGACC
1 GAAGATAACAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC
* * * *
19124312 GAAGATAAAAGATATTCTCTTCCTGTATTGGCAGCGAAGTAGATT
1 GAAGATAACAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC
* * * *
19124357 GAAGATAACAGATCTTGTCTTCCTGTATTGACGGCGAAATAGATT
1 GAAGATAACAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC
* * ** * *
19124402 AAAGATAGCAGATCTTACCTTCCTATATTGGCAGCGAAGCAGATC
1 GAAGATAACAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC
19124447 GAAGA
1 GAAGA
19124452 CACTAGCCTT
Statistics
Matches: 190, Mismatches: 40, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 190 1.00
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (45 bp):
GAAGATAACAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC
Found at i:19124450 original size:135 final size:135
Alignment explanation
Indices: 19124194--19124451 Score: 363
Period size: 135 Copynumber: 1.9 Consensus size: 135
19124184 GCAGATCTTG
* * * *
19124194 TCTTCCTGTATTAGCAGTGAAGTAGATCAAAGATAATAGATCTTGTCTTTCTGTATTGGCAGCGA
1 TCTTCCTGTATTAGCAGCGAAGTAGATCAAAGATAACAGATCTTGTCTTCCTGTATTGACAGCGA
* * ** * *
19124259 AGTAGATTGAAGATAGCAGATCTTGTCTTCCTGTATTGGCACCAAAGTAGACCGAAGATAAAAGA
66 AATAGATTAAAGATAGCAGATCTTACCTTCCTATATTGGCACCAAAGCAGACCGAAGATAAAAGA
19124324 TATTC
131 TATTC
* ** *
19124329 TCTTCCTGTATTGGCAGCGAAGTAGATTGAAGATAACAGATCTTGTCTTCCTGTATTGACGGCGA
1 TCTTCCTGTATTAGCAGCGAAGTAGATCAAAGATAACAGATCTTGTCTTCCTGTATTGACAGCGA
* * *
19124394 AATAGATTAAAGATAGCAGATCTTACCTTCCTATATTGGCAGCGAAGCAGATCGAAGA
66 AATAGATTAAAGATAGCAGATCTTACCTTCCTATATTGGCACCAAAGCAGACCGAAGA
19124452 CACTAGCCTT
Statistics
Matches: 106, Mismatches: 17, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
135 106 1.00
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (135 bp):
TCTTCCTGTATTAGCAGCGAAGTAGATCAAAGATAACAGATCTTGTCTTCCTGTATTGACAGCGA
AATAGATTAAAGATAGCAGATCTTACCTTCCTATATTGGCACCAAAGCAGACCGAAGATAAAAGA
TATTC
Found at i:19124480 original size:44 final size:44
Alignment explanation
Indices: 19124432--19124575 Score: 130
Period size: 44 Copynumber: 3.2 Consensus size: 44
19124422 TCCTATATTG
*
19124432 GCAGCGAAGCAGATCGAAGACACTAGCCTTACCTCCCTGAGTTT
1 GCAGCGAAGCAGATCGAAGACACTAGCCTTGCCTCCCTGAGTTT
* * * * ** * * *
19124476 GCAGCGGAGCAGA-CTAAAGATAGTAGATATTGCCTTCCTGTA-CTG
1 GCAGCGAAGCAGATC-GAAGACACTAG-CCTTGCCTCCCTG-AGTTT
* *
19124521 GCAGCGAAGCAGATCGAAAACACTAGCCTTGCCTCCCTAAGTTT
1 GCAGCGAAGCAGATCGAAGACACTAGCCTTGCCTCCCTGAGTTT
*
19124565 GCAGCGGAGCA
1 GCAGCGAAGCA
19124576 AACTAAAGAT
Statistics
Matches: 73, Mismatches: 22, Indels: 10
0.70 0.21 0.10
Matches are distributed among these distances:
43 2 0.03
44 40 0.55
45 29 0.40
46 2 0.03
ACGTcount: A:0.28, C:0.26, G:0.25, T:0.20
Consensus pattern (44 bp):
GCAGCGAAGCAGATCGAAGACACTAGCCTTGCCTCCCTGAGTTT
Found at i:19124523 original size:89 final size:89
Alignment explanation
Indices: 19124401--19124650 Score: 338
Period size: 89 Copynumber: 2.8 Consensus size: 89
19124391 CGAAATAGAT
* *
19124401 TAAAGATAGCAGATCTTACCTTCCTATATTGGCAGCGAAGCAGATCGAAGACACTAGCCTTACCT
1 TAAAGATAGAAGATCTTACCTTCCTGTATTGGCAGCGAAGCAGATCGAAGACACTAGCCTTACCT
* *
19124466 CCCTGAGTTTGCAGCGGAGCAGAC
66 CCCTAAGTTTGCAGCGGAGCAAAC
* * * * * *
19124490 TAAAGATAGTAGATATTGCCTTCCTGTACTGGCAGCGAAGCAGATCGAAAACACTAGCCTTGCCT
1 TAAAGATAGAAGATCTTACCTTCCTGTATTGGCAGCGAAGCAGATCGAAGACACTAGCCTTACCT
19124555 CCCTAAGTTTGCAGCGGAGCAAAC
66 CCCTAAGTTTGCAGCGGAGCAAAC
* * * * * * **
19124579 TAAAGATAGAAAATCTTATCTTCCTGTATTGGCAGCGAAGTAGATCAAAGTCACAAGCCTTGTCT
1 TAAAGATAGAAGATCTTACCTTCCTGTATTGGCAGCGAAGCAGATCGAAGACACTAGCCTTACCT
19124644 CCCTAAG
66 CCCTAAG
19124651 CAGTAGTGGA
Statistics
Matches: 140, Mismatches: 21, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
89 140 1.00
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (89 bp):
TAAAGATAGAAGATCTTACCTTCCTGTATTGGCAGCGAAGCAGATCGAAGACACTAGCCTTACCT
CCCTAAGTTTGCAGCGGAGCAAAC
Found at i:19124832 original size:132 final size:132
Alignment explanation
Indices: 19124639--19125067 Score: 603
Period size: 132 Copynumber: 3.2 Consensus size: 132
19124629 TCACAAGCCT
* *
19124639 TGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGAAA-CTTATCTTCCCAATGTAGTAGG
1 TGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGG-AAAATCTTATCTTCCCAAGGTAGTAGG
* * *
19124703 GAAGCAGATTTAAGCCACCAATCCTATCTCCCTGAGTAGTAGCGGAATAGGTT-AACGATTATAG
65 GAAGCAAATTTAAGCCACCAATCCTATCTCCTTGAGTAGTAGCAGAATAGGTTGAA-GATTATAG
*
19124767 ATCT
129 ATCC
* *
19124771 TGTCTCTCTAAGCAGTAGTGGAGCAGATCGAAGATGGAAAATCTTATCTTCTCAAGGTAGTAGGG
1 TGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGAAAATCTTATCTTCCCAAGGTAGTAGGG
* * * * *
19124836 AAGCAAATTTAAGCCACCAGTCCTATCTCCTTGAGCAGCAGTAGAGTAGGTTGAAGATTATAGAT
66 AAGCAAATTTAAGCCACCAATCCTATCTCCTTGAGTAGTAGCAGAATAGGTTGAAGATTATAGAT
19124901 CC
131 CC
* * *** * *
19124903 TATCTCCCTAAGCAGTAGTGGAGCAAATCGAAGGCAGCAAATCCTATCTTCCCAAGGTAGTAGGG
1 TGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGAAAATCTTATCTTCCCAAGGTAGTAGGG
* * *
19124968 AAGCAAATTTAAGCCACCAATCCCT-TCTTCTTGAGTAGTAGCAGATTAGGTTGAAGATTGTAGA
66 AAGCAAATTTAAGCCACCAAT-CCTATCTCCTTGAGTAGTAGCAGAATAGGTTGAAGATTATAGA
19125032 TCC
130 TCC
19125035 TGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAG
1 TGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAG
19125068 GCAGCTAATC
Statistics
Matches: 263, Mismatches: 31, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
131 3 0.01
132 255 0.97
133 5 0.02
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.26
Consensus pattern (132 bp):
TGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGAAAATCTTATCTTCCCAAGGTAGTAGGG
AAGCAAATTTAAGCCACCAATCCTATCTCCTTGAGTAGTAGCAGAATAGGTTGAAGATTATAGAT
CC
Found at i:19125410 original size:89 final size:89
Alignment explanation
Indices: 19125220--19125415 Score: 218
Period size: 89 Copynumber: 2.2 Consensus size: 89
19125210 TGAAGATATC
* * * **
19125220 AATCTTATCTCCTTGAAGTTGCAGTGGGGCAGATTGAAGTTACAAGTCCTATCTCCCTGAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACAAGTCCTATCTCCCTGAAGTTG
*
19125285 CAGTGGAGTAGACTGAGGATGGCG
66 CAGTGGAGTAGACTGAGGATAGCG
** *
19125309 AATCTTGCCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGCCA-ATAGTCCTA-CTTCCCTGAAGT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACA-AGTCCTATC-TCCCTGAAGT
** *
19125372 TGCAGTGGAGTAGGTTGAAGGA-AGTG
64 TGCAGTGGAGTAGACTG-AGGATAGCG
* *
19125398 AGTCTTATCTCCCCGAAG
1 AATCTTATCTCCCTGAAG
19125416 CTAGAGTGGG
Statistics
Matches: 88, Mismatches: 16, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
88 2 0.02
89 82 0.93
90 4 0.05
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (89 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACAAGTCCTATCTCCCTGAAGTTG
CAGTGGAGTAGACTGAGGATAGCG
Found at i:19126615 original size:3 final size:3
Alignment explanation
Indices: 19126607--19126690 Score: 64
Period size: 3 Copynumber: 27.3 Consensus size: 3
19126597 GTCCTGTTTG
* *
19126607 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA CCCTA TTG TTA TTA TT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA --TTA TTA TTA TTA TTA
* * * *
19126653 TTCA TTA TAA TATA TT- TTA CTA TTA TTC TTA GTA TTA T
1 TT-A TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA T
19126691 AGATTACTAT
Statistics
Matches: 63, Mismatches: 12, Indels: 12
0.72 0.14 0.14
Matches are distributed among these distances:
2 4 0.06
3 53 0.84
4 4 0.06
5 2 0.03
ACGTcount: A:0.30, C:0.07, G:0.02, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:19128498 original size:22 final size:22
Alignment explanation
Indices: 19128456--19128496 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
19128446 TGCCATTAGG
19128456 GTTCAAATGGAAAAAGGAAATT
1 GTTCAAATGGAAAAAGGAAATT
*
19128478 GTTC-AATTGAAAAAGGAAA
1 GTTCAAATGGAAAAAGGAAA
19128497 ATGAGTGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.51, C:0.05, G:0.22, T:0.22
Consensus pattern (22 bp):
GTTCAAATGGAAAAAGGAAATT
Found at i:19133146 original size:32 final size:31
Alignment explanation
Indices: 19133080--19133146 Score: 82
Period size: 31 Copynumber: 2.1 Consensus size: 31
19133070 TGTATAAAAT
*
19133080 ATTTCAAAAAATTAAATATAAAAATAAATAA
1 ATTTCAAAAAATTAAATATAAAAAGAAATAA
* *
19133111 ATTTTAAATAAATT-AATATAAAACAGAAATCA
1 ATTTCAAA-AAATTAAATATAAAA-AGAAATAA
19133143 ATTT
1 ATTT
19133147 AATTTTTATA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
31 16 0.52
32 15 0.48
ACGTcount: A:0.61, C:0.04, G:0.01, T:0.33
Consensus pattern (31 bp):
ATTTCAAAAAATTAAATATAAAAAGAAATAA
Found at i:19137189 original size:21 final size:21
Alignment explanation
Indices: 19137149--19137189 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
19137139 TTTAACCTAA
* *
19137149 AATATGAATTGGATTGAATTG
1 AATATGAACTGGATTAAATTG
*
19137170 AATATGAACTGTATTAAATT
1 AATATGAACTGGATTAAATT
19137190 AATTTAAATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.41, C:0.02, G:0.17, T:0.39
Consensus pattern (21 bp):
AATATGAACTGGATTAAATTG
Found at i:19137579 original size:24 final size:25
Alignment explanation
Indices: 19137532--19137579 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
19137522 TTAGCCCTCT
* *
19137532 CGAGCTTCCCGTTATATAGTTCTTG
1 CGAGCTTCCCGCTATATAGCTCTTG
*
19137557 CGAGCTTCTCGCTA-ATAGCTCTT
1 CGAGCTTCCCGCTATATAGCTCTT
19137580 CGAAGCATCC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 8 0.40
25 12 0.60
ACGTcount: A:0.17, C:0.27, G:0.19, T:0.38
Consensus pattern (25 bp):
CGAGCTTCCCGCTATATAGCTCTTG
Found at i:19140251 original size:9 final size:9
Alignment explanation
Indices: 19140237--19140264 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
19140227 ACAGTCGGTT
19140237 TCAAAGAAA
1 TCAAAGAAA
19140246 TCAAAGAAA
1 TCAAAGAAA
19140255 TCAAAGAAA
1 TCAAAGAAA
19140264 T
1 T
19140265 ATCATAACCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.64, C:0.11, G:0.11, T:0.14
Consensus pattern (9 bp):
TCAAAGAAA
Found at i:19158335 original size:18 final size:18
Alignment explanation
Indices: 19158281--19158355 Score: 62
Period size: 18 Copynumber: 4.2 Consensus size: 18
19158271 CATAATTTGG
*
19158281 CAAATTAATATAGTTCCC
1 CAAATTAATATAGTTCAC
* * **
19158299 CATATTAATACAGAACAC
1 CAAATTAATATAGTTCAC
*
19158317 CAAATTAACATAGTTCAC
1 CAAATTAATATAGTTCAC
* *
19158335 CATAA-TCATATAATTCAC
1 CA-AATTAATATAGTTCAC
19158353 CAA
1 CAA
19158356 GTTAGCATGG
Statistics
Matches: 43, Mismatches: 13, Indels: 3
0.73 0.22 0.05
Matches are distributed among these distances:
17 1 0.02
18 40 0.93
19 2 0.05
ACGTcount: A:0.45, C:0.23, G:0.04, T:0.28
Consensus pattern (18 bp):
CAAATTAATATAGTTCAC
Found at i:19158691 original size:65 final size:64
Alignment explanation
Indices: 19158599--19158746 Score: 160
Period size: 65 Copynumber: 2.3 Consensus size: 64
19158589 AAACTCATAT
* * * *
19158599 ACATATATATTATATA-A-AATAAGACCCATATATGCATATATATT-ATATATAATCAAAACTCA
1 ACATATATATTATATATATAACAAGACCCATACAT--ATATATATTAATATATAAACAAAACCCA
19158661 C
64 C
* *
19158662 ACATATATATTATATATATAACATA-ACCCATGCATATATTTATTACATATATAAACAAAACCCA
1 ACATATATATTATATATATAACA-AGACCCATACATATATATATTA-ATATATAAACAAAACCCA
19158726 C
64 C
* *
19158727 GCATATATATTGTATATATA
1 ACATATATATTATATATATA
19158747 CGCATACCAT
Statistics
Matches: 72, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
63 24 0.33
64 1 0.01
65 46 0.64
66 1 0.01
ACGTcount: A:0.47, C:0.15, G:0.03, T:0.34
Consensus pattern (64 bp):
ACATATATATTATATATATAACAAGACCCATACATATATATATTAATATATAAACAAAACCCAC
Found at i:19158712 original size:33 final size:34
Alignment explanation
Indices: 19158634--19158736 Score: 108
Period size: 34 Copynumber: 3.2 Consensus size: 34
19158624 CCATATATGC
* * *
19158634 ATATATATT--ATATATAATCAAAACTCA--CAC
1 ATATATATTACATATATAAACAAAACCCACGCAT
* * *
19158664 ATATATATTATATATAT-AACATAACCCATGCAT
1 ATATATATTACATATATAAACAAAACCCACGCAT
*
19158697 ATATTTATTACATATATAAACAAAACCCACGCAT
1 ATATATATTACATATATAAACAAAACCCACGCAT
19158731 ATATAT
1 ATATAT
19158737 TGTATATATA
Statistics
Matches: 59, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
30 9 0.15
31 8 0.14
32 6 0.10
33 17 0.29
34 19 0.32
ACGTcount: A:0.48, C:0.17, G:0.02, T:0.34
Consensus pattern (34 bp):
ATATATATTACATATATAAACAAAACCCACGCAT
Found at i:19180724 original size:26 final size:26
Alignment explanation
Indices: 19180664--19180716 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19180654 AAAAACTTCA
19180664 AAAATTAATAAAATATATTTAAAATT
1 AAAATTAATAAAATATATTTAAAATT
*
19180690 AAAATTAATAAAATATATTTAACATT
1 AAAATTAATAAAATATATTTAAAATT
19180716 A
1 A
19180717 TTAATAATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (26 bp):
AAAATTAATAAAATATATTTAAAATT
Found at i:19181491 original size:20 final size:21
Alignment explanation
Indices: 19181451--19181497 Score: 60
Period size: 20 Copynumber: 2.2 Consensus size: 21
19181441 TTTGTAATAT
*
19181451 TTTTATTAATTTTTTAAATAAC
1 TTTTATTAA-TTTTAAAATAAC
*
19181473 TTTTATTAA-TTTAAAATAAT
1 TTTTATTAATTTTAAAATAAC
19181493 TTTTA
1 TTTTA
19181498 AATTTTTTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 14 0.61
22 9 0.39
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (21 bp):
TTTTATTAATTTTAAAATAAC
Found at i:19181664 original size:23 final size:23
Alignment explanation
Indices: 19181630--19181678 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
19181620 AGGATGGCGC
19181630 ATAGGCGACACCACCCTAAAAAT
1 ATAGGCGACACCACCCTAAAAAT
*
19181653 ATAGGCGGCACCACCCTAAAAAT
1 ATAGGCGACACCACCCTAAAAAT
19181676 ATA
1 ATA
19181679 TATATTAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.43, C:0.29, G:0.14, T:0.14
Consensus pattern (23 bp):
ATAGGCGACACCACCCTAAAAAT
Found at i:19182171 original size:30 final size:29
Alignment explanation
Indices: 19182135--19182192 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 29
19182125 AAGTAGAAGA
*
19182135 AGTTGTGTTT-GGGATTTGAGAAAAAATTAG
1 AGTTGTGTTTAAGG-TTTGA-AAAAAATTAG
19182165 AGTTGTGTTTAAGGTTTGAAAAAAATTA
1 AGTTGTGTTTAAGGTTTGAAAAAAATTA
19182193 ATCTAGAGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 9 0.35
30 15 0.58
31 2 0.08
ACGTcount: A:0.36, C:0.00, G:0.26, T:0.38
Consensus pattern (29 bp):
AGTTGTGTTTAAGGTTTGAAAAAAATTAG
Found at i:19182537 original size:49 final size:49
Alignment explanation
Indices: 19182470--19182598 Score: 213
Period size: 49 Copynumber: 2.6 Consensus size: 49
19182460 GAAAGAATAT
* *
19182470 TTTATTTTTTTATGTAATTTATTTGTCCTATGTGTTTTAGGTTTATTAGA
1 TTTA-TTTTTTATGTAATTTATTTGTCATATGTATTTTAGGTTTATTAGA
*
19182520 TTTATTTTTTATATAATTTATTTGTCATATGTATTTTAGGTTTATTAGA
1 TTTATTTTTTATGTAATTTATTTGTCATATGTATTTTAGGTTTATTAGA
*
19182569 TTTATTTTTTATGTAATTTATTTGGCATAT
1 TTTATTTTTTATGTAATTTATTTGTCATAT
19182599 TTTTATTATT
Statistics
Matches: 74, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
49 70 0.95
50 4 0.05
ACGTcount: A:0.23, C:0.03, G:0.12, T:0.62
Consensus pattern (49 bp):
TTTATTTTTTATGTAATTTATTTGTCATATGTATTTTAGGTTTATTAGA
Found at i:19182538 original size:16 final size:16
Alignment explanation
Indices: 19182519--19182591 Score: 51
Period size: 16 Copynumber: 4.5 Consensus size: 16
19182509 GGTTTATTAG
19182519 ATTTATTTTTTATATA
1 ATTTATTTTTTATATA
* * *
19182535 ATTTATTTGTCATATGT
1 ATTTATTTTTTATAT-A
**
19182552 ATTT-TAGGTTTAT-TA
1 ATTTAT-TTTTTATATA
*
19182567 GATTTATTTTTTATGTA
1 -ATTTATTTTTTATATA
19182584 ATTTATTT
1 ATTTATTT
19182592 GGCATATTTT
Statistics
Matches: 42, Mismatches: 10, Indels: 10
0.68 0.16 0.16
Matches are distributed among these distances:
16 32 0.76
17 10 0.24
ACGTcount: A:0.26, C:0.01, G:0.08, T:0.64
Consensus pattern (16 bp):
ATTTATTTTTTATATA
Found at i:19182685 original size:27 final size:27
Alignment explanation
Indices: 19182653--19182724 Score: 126
Period size: 27 Copynumber: 2.7 Consensus size: 27
19182643 AAAAAATGAG
* *
19182653 ACCATTGAGATGGAATTTGTGAATGGA
1 ACCATTGAGTTGGAATTTGTGAATAGA
19182680 ACCATTGAGTTGGAATTTGTGAATAGA
1 ACCATTGAGTTGGAATTTGTGAATAGA
19182707 ACCATTGAGTTGGAATTT
1 ACCATTGAGTTGGAATTT
19182725 ATGAGATAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.32, C:0.08, G:0.26, T:0.33
Consensus pattern (27 bp):
ACCATTGAGTTGGAATTTGTGAATAGA
Found at i:19184206 original size:14 final size:14
Alignment explanation
Indices: 19184187--19184214 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
19184177 TTTTTCCAAT
19184187 GATACTATTCTAAC
1 GATACTATTCTAAC
19184201 GATACTATTCTAAC
1 GATACTATTCTAAC
19184215 ATGTAATTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.21, G:0.07, T:0.36
Consensus pattern (14 bp):
GATACTATTCTAAC
Found at i:19184857 original size:18 final size:18
Alignment explanation
Indices: 19184836--19184879 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
19184826 ATACGAGCTA
* *
19184836 GAGCCTGAGCTAGAGCCC
1 GAGCCTGAGCCAGAGACC
*
19184854 GAGCCCGAGCCAGAGACC
1 GAGCCTGAGCCAGAGACC
*
19184872 GACCCTGA
1 GAGCCTGA
19184880 AATCGAGTCA
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.25, C:0.36, G:0.32, T:0.07
Consensus pattern (18 bp):
GAGCCTGAGCCAGAGACC
Found at i:19190552 original size:21 final size:21
Alignment explanation
Indices: 19190526--19190579 Score: 90
Period size: 21 Copynumber: 2.6 Consensus size: 21
19190516 AAAGCTAATT
*
19190526 AAAACACTAACTCATGCAGTG
1 AAAACACTAACTCATGCAATG
*
19190547 AAAACATTAACTCATGCAATG
1 AAAACACTAACTCATGCAATG
19190568 AAAACACTAACT
1 AAAACACTAACT
19190580 TATTCGTTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.48, C:0.22, G:0.09, T:0.20
Consensus pattern (21 bp):
AAAACACTAACTCATGCAATG
Found at i:19191981 original size:14 final size:15
Alignment explanation
Indices: 19191954--19191982 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
19191944 ACAGTTAGAG
19191954 GGGAAGAGAGAAAGA
1 GGGAAGAGAGAAAGA
19191969 GGGAAGA-AGAAAGA
1 GGGAAGAGAGAAAGA
19191983 AAATGGAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.55, C:0.00, G:0.45, T:0.00
Consensus pattern (15 bp):
GGGAAGAGAGAAAGA
Found at i:19201314 original size:169 final size:169
Alignment explanation
Indices: 19201035--19201373 Score: 579
Period size: 169 Copynumber: 2.0 Consensus size: 169
19201025 GGACCCCACC
* *
19201035 AGGTGGAGTCATTAGGGGGATCGCGAGCCCAGTTCGCACATCCTTGGATGTCCACGAGCATAGGA
1 AGGTGGAGTAATTAGGGGGATCGCGAGCCCAGTTCGCACATCCCTGGATGTCCACGAGCATAGGA
19201100 TACGAGGTCAAACGAATAAACCGATGAGCACCTGGACCAGTGAACACGTGTTGAGTTTAGGGTAA
66 TACGAGGTCAAACGAATAAACCGATGAGCACCTGGACCAGTGAACACGTGTTGAGTTTAGGGTAA
* *
19201165 CATACGTGTTGACATGCATGGAGCCTACCTAGAACGTCA
131 CATACATGTCGACATGCATGGAGCCTACCTAGAACGTCA
* *
19201204 AGGTGGAGTAATTAGGGGGCTCGCGAGCCCAGTTCGCACATCCCTGGATGTCCACGAGCATAGGG
1 AGGTGGAGTAATTAGGGGGATCGCGAGCCCAGTTCGCACATCCCTGGATGTCCACGAGCATAGGA
* ** * *
19201269 TACGAGGTCAAACGAATGAATTGATGAGCACCTGGACTAGTGAACATGTGTTGAGTTTAGGGTAA
66 TACGAGGTCAAACGAATAAACCGATGAGCACCTGGACCAGTGAACACGTGTTGAGTTTAGGGTAA
19201334 CATACATGTCGACATGCATGGAGCCTACCTAGAACGTCA
131 CATACATGTCGACATGCATGGAGCCTACCTAGAACGTCA
19201373 A
1 A
19201374 TTCCATGAAC
Statistics
Matches: 159, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
169 159 1.00
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.21
Consensus pattern (169 bp):
AGGTGGAGTAATTAGGGGGATCGCGAGCCCAGTTCGCACATCCCTGGATGTCCACGAGCATAGGA
TACGAGGTCAAACGAATAAACCGATGAGCACCTGGACCAGTGAACACGTGTTGAGTTTAGGGTAA
CATACATGTCGACATGCATGGAGCCTACCTAGAACGTCA
Found at i:19206622 original size:24 final size:24
Alignment explanation
Indices: 19206595--19206642 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
19206585 TTTTCTACTA
* *
19206595 AAAAAAATGAGTAAATTAGTTCTT
1 AAAAAAATAAGTAAATTAATTCTT
19206619 AAAAAAATAAGTAAATTAATTCTT
1 AAAAAAATAAGTAAATTAATTCTT
19206643 GTATGTTAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.54, C:0.04, G:0.08, T:0.33
Consensus pattern (24 bp):
AAAAAAATAAGTAAATTAATTCTT
Found at i:19207229 original size:16 final size:16
Alignment explanation
Indices: 19207192--19207233 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
19207182 TTAATCATAT
*
19207192 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
19207208 TT-AAATATATTATAA
1 TTAAAATATATTATAA
19207223 TTAAAATATAT
1 TTAAAATATAT
19207234 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:19207240 original size:14 final size:15
Alignment explanation
Indices: 19207201--19207242 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
19207191 TTTAAACATA
*
19207201 ATTATTATTAAATAT
1 ATTATAATTAAATAT
19207216 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
19207230 A-TATAATTTAATA
1 ATTATAATTAAATA
19207243 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:19207340 original size:120 final size:120
Alignment explanation
Indices: 19207195--19207607 Score: 693
Period size: 120 Copynumber: 3.4 Consensus size: 120
19207185 ATCATATTTA
19207195 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
19207260 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
19207315 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
19207380 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
* ** * *
19207435 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAATATTAATAATTATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
* * * *
19207500 TACTCTTATATGAATTTATTCAAATCATAATATATGATACTATAAAAGATAATTT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
* * * *
19207555 GAA-ATAATTAATATTAAATATATTTTAATTAAAATATATGACTTAATAAAATT
1 -AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATT
19207608 TAAAATAATT
Statistics
Matches: 278, Mismatches: 14, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
120 276 0.99
121 2 0.01
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.42
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
Found at i:19207360 original size:14 final size:15
Alignment explanation
Indices: 19207311--19207362 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
19207301 ATAAAATATA
19207311 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
19207326 TATTAAATATATTAT
1 AATTAAATATATTAT
19207341 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
19207354 AATTTAATA
1 AATTAAATA
19207363 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:19207459 original size:15 final size:15
Alignment explanation
Indices: 19207431--19207495 Score: 64
Period size: 15 Copynumber: 4.3 Consensus size: 15
19207421 ATAAAATATA
19207431 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
19207446 TATTAAATATATTAT
1 AATTAAATATATTAT
19207461 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
19207474 AATTTAATAATATTAAT
1 AATTAAAT-ATATT-AT
19207491 AATTA
1 AATTA
19207496 TTAATACTCT
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
13 9 0.22
14 6 0.15
15 19 0.46
16 1 0.02
17 6 0.15
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:19207591 original size:59 final size:57
Alignment explanation
Indices: 19207288--19207618 Score: 180
Period size: 59 Copynumber: 5.6 Consensus size: 57
19207278 CTCAAATCAT
* *
19207288 AATATATGATACTATAAAATATAAATTAACATAATTATTATTAAATATATTATAATTAA
1 AATATATGATACTATAAAA-ATAATTTAA-ATAATTAATATTAAATATATTATAATTAA
* * * * ** * *
19207347 AATATAT-A-A-TTTAATAA-AATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATGATACTATAAAAATAATT-TAAATAATTAATATT-AAATAT--A-TTA-T--AATTAA
* *
19207408 AATATATGATACTATAAAATATAAATTAACATAATTATTATTAAATATATTATAATTAA
1 AATATATGATACTATAAAA-ATAATTTAA-ATAATTAATATTAAATATATTATAATTAA
* * * * * * * * *
19207467 AATATATAAT-TTAATAATATTAATAATTATTAATACTCTTATA-TGAATTTATTCA-AATCAT
1 AATATATGATACT-ATAA-A--AATAATT-TAAATAAT-TAATATTAAATATATT-ATAATTAA
*
19207528 AATATATGATACTATAAAAGATAATTTGAAATAATTAATATTAAATATATTTTAATTAA
1 AATATATGATACTATAAAA-ATAATTT-AAATAATTAATATTAAATATATTATAATTAA
*
19207587 AATATATG--ACT-TAATAA-AATTTAAAATAATTA
1 AATATATGATACTATAAAAATAATTT-AAATAATTA
19207619 TAACTAATAA
Statistics
Matches: 203, Mismatches: 43, Indels: 57
0.67 0.14 0.19
Matches are distributed among these distances:
54 27 0.13
55 8 0.04
56 9 0.04
57 5 0.02
58 11 0.05
59 56 0.28
60 2 0.01
61 46 0.23
62 12 0.06
63 2 0.01
64 5 0.02
65 7 0.03
66 13 0.06
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.42
Consensus pattern (57 bp):
AATATATGATACTATAAAAATAATTTAAATAATTAATATTAAATATATTATAATTAA
Found at i:19207680 original size:26 final size:28
Alignment explanation
Indices: 19207648--19207708 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
19207638 TATGAATTTG
*
19207648 TATAATTTAA-AATAAT-TATTATTACA
1 TATAATTTAATAATAATATATAATTACA
*
19207674 TATAATTTAATAATAATATATAATTTCA
1 TATAATTTAATAATAATATATAATTACA
*
19207702 TAAAATT
1 TATAATT
19207709 CTTGATAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (28 bp):
TATAATTTAATAATAATATATAATTACA
Found at i:19207706 original size:47 final size:45
Alignment explanation
Indices: 19207655--19207798 Score: 116
Period size: 47 Copynumber: 3.1 Consensus size: 45
19207645 TTGTATAATT
19207655 TAAAATAATTATTATTACATATAATTTAATAATAATATATAATTTCA
1 TAAAATAATTA-TATTA-ATATAATTTAATAATAATATATAATTTCA
** * * * * * *
19207702 TAAAATTCTTGATAATAA-AT-TTTCTTATATTAATTTATACAATT--
1 TAAAATAATT-ATATTAATATAATT-TAATAATAATATATA-ATTTCA
*
19207746 TAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCA
1 TAAAATAATT-ATATT-AATATAATTTAATAATAATATATAATTTCA
19207793 TAAAAT
1 TAAAAT
19207799 TCTTAATAAT
Statistics
Matches: 71, Mismatches: 18, Indels: 16
0.68 0.17 0.15
Matches are distributed among these distances:
44 14 0.20
45 19 0.27
46 17 0.24
47 20 0.28
48 1 0.01
ACGTcount: A:0.49, C:0.04, G:0.01, T:0.45
Consensus pattern (45 bp):
TAAAATAATTATATTAATATAATTTAATAATAATATATAATTTCA
Found at i:19207718 original size:91 final size:91
Alignment explanation
Indices: 19207623--19207830 Score: 319
Period size: 91 Copynumber: 2.3 Consensus size: 91
19207613 TAATTATAAC
* * * *
19207623 TAAT-AATTTATCTTATATGAATTTGTATAATTTAAAATAATTATTATTACATATAATTTAATAA
1 TAATAAATTT-TCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAA
*
19207687 TAATATATAATTTCATAAAATTCTTGA
65 TAATATATAATTTCATAAAATTCTTAA
*
19207714 TAATAAATTTTCTTATATTAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
1 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
19207779 GATATATAATTTCATAAAATTCTTAA
66 AATATATAATTTCATAAAATTCTTAA
*
19207805 TAATAAAATGTTCTTATATGAATTTA
1 TAAT-AAATTTTCTTATATGAATTTA
19207831 CTAAAATCAA
Statistics
Matches: 106, Mismatches: 9, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
91 82 0.77
92 24 0.23
ACGTcount: A:0.46, C:0.04, G:0.03, T:0.47
Consensus pattern (91 bp):
TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
AATATATAATTTCATAAAATTCTTAA
Found at i:19207790 original size:44 final size:43
Alignment explanation
Indices: 19207648--19207790 Score: 124
Period size: 44 Copynumber: 3.2 Consensus size: 43
19207638 TATGAATTTG
* *
19207648 TATAATTTAAAATAATTATTATTACATATAATTTAATAATAATA
1 TATAATTTAAAATAATTAATATTAAATATAATTTAATAAT-ATA
** * * * ** * *
19207692 TATAATTTCATAAAATTCTTGATAATAAATTTTCTTATATTAATTTA
1 TATAA-TT--TAAAATAATTAATATTAAATATAATT-TAATAATATA
*
19207739 TACAATTTAAAATAATTAATATTAAATATAATTTAATAATGATA
1 TATAATTTAAAATAATTAATATTAAATATAATTTAATAAT-ATA
19207783 TATAATTT
1 TATAATTT
19207791 CATAAAATTC
Statistics
Matches: 72, Mismatches: 22, Indels: 10
0.69 0.21 0.10
Matches are distributed among these distances:
43 6 0.08
44 33 0.46
45 2 0.03
46 2 0.03
47 23 0.32
48 6 0.08
ACGTcount: A:0.48, C:0.03, G:0.01, T:0.47
Consensus pattern (43 bp):
TATAATTTAAAATAATTAATATTAAATATAATTTAATAATATA
Found at i:19207805 original size:47 final size:46
Alignment explanation
Indices: 19207673--19207811 Score: 140
Period size: 47 Copynumber: 3.0 Consensus size: 46
19207663 TTATTATTAC
*
19207673 ATATAATTTAATAATAATATATAATTTCATAAAATTCTTGATAATAA
1 ATATAATTTAATAAT-ATATATAATTTCATAAAATTCTTAATAATAA
* ** * * * ** *
19207720 ATTTTCTTATATTAATTTATACAA-TT--TAAAATAATTAATATTAA
1 ATATAATT-TAATAATATATATAATTTCATAAAATTCTTAATAATAA
19207764 ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
1 ATATAATTTAATAAT-ATATATAATTTCATAAAATTCTTAATAATAA
19207811 A
1 A
19207812 ATGTTCTTAT
Statistics
Matches: 68, Mismatches: 19, Indels: 10
0.70 0.20 0.10
Matches are distributed among these distances:
43 6 0.09
44 25 0.37
45 2 0.03
46 2 0.03
47 27 0.40
48 6 0.09
ACGTcount: A:0.50, C:0.04, G:0.01, T:0.45
Consensus pattern (46 bp):
ATATAATTTAATAATATATATAATTTCATAAAATTCTTAATAATAA
Found at i:19211118 original size:6 final size:6
Alignment explanation
Indices: 19211107--19211132 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
19211097 TAGTTTGAAC
19211107 ATTTAA ATTTAA ATTTAA ATTTAA AT
1 ATTTAA ATTTAA ATTTAA ATTTAA AT
19211133 ATAGTTTCGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (6 bp):
ATTTAA
Found at i:19211584 original size:13 final size:13
Alignment explanation
Indices: 19211566--19211590 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
19211556 ATCAAATTTG
19211566 TATGTACTCTTTA
1 TATGTACTCTTTA
19211579 TATGTACTCTTT
1 TATGTACTCTTT
19211591 CACTAATAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.16, G:0.08, T:0.56
Consensus pattern (13 bp):
TATGTACTCTTTA
Found at i:19211610 original size:51 final size:51
Alignment explanation
Indices: 19211555--19211659 Score: 156
Period size: 51 Copynumber: 2.1 Consensus size: 51
19211545 TATATATTAG
** *
19211555 TATCAAATTTGTATGTACTCTTTATATGTACTCTTTCACTAATAAATTATA
1 TATCAAATTTGTATCAACTCTTTATATGTACGCTTTCACTAATAAATTATA
* * *
19211606 TATCAAATTTGTATCAATTTTTTTTATGTACGCTTTCACTAATAAATTATA
1 TATCAAATTTGTATCAACTCTTTATATGTACGCTTTCACTAATAAATTATA
19211657 TAT
1 TAT
19211660 TAGTAAAAAG
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
51 48 1.00
ACGTcount: A:0.33, C:0.12, G:0.06, T:0.49
Consensus pattern (51 bp):
TATCAAATTTGTATCAACTCTTTATATGTACGCTTTCACTAATAAATTATA
Found at i:19212124 original size:3 final size:3
Alignment explanation
Indices: 19212116--19212144 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
19212106 TAATTAGTGG
19212116 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
19212145 GCTTTCCTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:19214675 original size:31 final size:31
Alignment explanation
Indices: 19214633--19214693 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 31
19214623 TTGAAACAAA
* *
19214633 AAACGCTTTTGAAATAAAAATATTTCTAAAC
1 AAACACTTTTGAAAGAAAAATATTTCTAAAC
* * *
19214664 AAACACTTTTGAGAGAAAAATGTTTTTAAA
1 AAACACTTTTGAAAGAAAAATATTTCTAAA
19214694 ACGCCAAAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.48, C:0.10, G:0.10, T:0.33
Consensus pattern (31 bp):
AAACACTTTTGAAAGAAAAATATTTCTAAAC
Found at i:19215069 original size:3 final size:3
Alignment explanation
Indices: 19215061--19215088 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
19215051 CAAGGTATGT
19215061 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
19215089 CTTTTTCCTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:19221100 original size:51 final size:51
Alignment explanation
Indices: 19221039--19221192 Score: 308
Period size: 51 Copynumber: 3.0 Consensus size: 51
19221029 AAATTAAAAG
19221039 ATTATACATACACCAACAATGTTTTTTAGGGTAAATAACATTAAACCAACA
1 ATTATACATACACCAACAATGTTTTTTAGGGTAAATAACATTAAACCAACA
19221090 ATTATACATACACCAACAATGTTTTTTAGGGTAAATAACATTAAACCAACA
1 ATTATACATACACCAACAATGTTTTTTAGGGTAAATAACATTAAACCAACA
19221141 ATTATACATACACCAACAATGTTTTTTAGGGTAAATAACATTAAACCAACA
1 ATTATACATACACCAACAATGTTTTTTAGGGTAAATAACATTAAACCAACA
19221192 A
1 A
19221193 GTAATTTTAG
Statistics
Matches: 103, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 103 1.00
ACGTcount: A:0.45, C:0.18, G:0.08, T:0.29
Consensus pattern (51 bp):
ATTATACATACACCAACAATGTTTTTTAGGGTAAATAACATTAAACCAACA
Found at i:19221201 original size:33 final size:34
Alignment explanation
Indices: 19221143--19221248 Score: 105
Period size: 33 Copynumber: 3.2 Consensus size: 34
19221133 AACCAACAAT
* *
19221143 TATACATACACCAACAATGT-TTTTTAGGGT-AAA
1 TATACATAAACCAACAA-GTAATTTTAGGGTCAAA
*
19221176 TA-ACATTAAACCAACAAGTAATTTTA-GGTCAAT
1 TATACA-TAAACCAACAAGTAATTTTAGGGTCAAA
* * *
19221209 TATACATACACCAACAATTAATTTTA-GGTCAAT
1 TATACATAAACCAACAAGTAATTTTAGGGTCAAA
19221242 TATACAT
1 TATACAT
19221249 GCTTTATAAT
Statistics
Matches: 64, Mismatches: 5, Indels: 8
0.83 0.06 0.10
Matches are distributed among these distances:
32 8 0.12
33 53 0.83
34 3 0.05
ACGTcount: A:0.42, C:0.16, G:0.08, T:0.33
Consensus pattern (34 bp):
TATACATAAACCAACAAGTAATTTTAGGGTCAAA
Found at i:19224471 original size:16 final size:16
Alignment explanation
Indices: 19224437--19224478 Score: 52
Period size: 18 Copynumber: 2.6 Consensus size: 16
19224427 ATTATTAAGA
19224437 ATTTTATTAAATTATAT
1 ATTTTATTAAA-TATAT
19224454 ATTTTAATTAAA-ATAT
1 ATTTT-ATTAAATATAT
19224470 A-TTTATTAA
1 ATTTTATTAA
19224479 TATTTATGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
14 5 0.21
15 3 0.12
16 5 0.21
17 5 0.21
18 6 0.25
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
ATTTTATTAAATATAT
Found at i:19224479 original size:18 final size:18
Alignment explanation
Indices: 19224437--19224471 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
19224427 ATTATTAAGA
*
19224437 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAAATATAT
19224454 ATTTTAATTAAAATATAT
1 ATTTTAATTAAAATATAT
19224472 TTATTAATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
ATTTTAATTAAAATATAT
Found at i:19224515 original size:119 final size:119
Alignment explanation
Indices: 19224384--19224607 Score: 396
Period size: 120 Copynumber: 1.9 Consensus size: 119
19224374 TATTAATTAT
19224384 AGTATCATATATTATGATTTGAATAAATT-ATATAAGAATATGAATTATTAAGAATTTTATTAAA
1 AGTATCATATATTATGATTTGAATAAATTAATATAAGAATATGAATTATTAAGAATTTTATTAAA
* *
19224448 TTATATATTTTAATTAAAATATATTTATTAATATTTATGTTAATTTATATTTTAC
66 TTATATATTTTAATTAAAATATATTTAATAA-AATTATGTTAATTTATATTTTAC
* *
19224503 AGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAA
1 AGTATCATATATTATGATTTGAATAAATTAATATAAGAATATGAATTATTAAGAATTTTATTAAA
19224568 TTATATATTTTAATTAAAATATATTTAATAAAATTATGTT
66 TTATATATTTTAATTAAAATATATTTAATAAAATTATGTT
19224608 TAAATATGAT
Statistics
Matches: 100, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
119 36 0.36
120 64 0.64
ACGTcount: A:0.44, C:0.01, G:0.06, T:0.48
Consensus pattern (119 bp):
AGTATCATATATTATGATTTGAATAAATTAATATAAGAATATGAATTATTAAGAATTTTATTAAA
TTATATATTTTAATTAAAATATATTTAATAAAATTATGTTAATTTATATTTTAC
Found at i:19224585 original size:18 final size:18
Alignment explanation
Indices: 19224557--19224604 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 18
19224547 ATTATTAAGA
19224557 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAATTATAT
19224574 ATTTTAATTAAA--ATAT
1 ATTTTAATTAAATTATAT
*
19224590 A-TTTAATAAAATTAT
1 ATTTTAATTAAATTAT
19224605 GTTTAAATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
15 9 0.33
16 5 0.19
17 7 0.26
18 6 0.22
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (18 bp):
ATTTTAATTAAATTATAT
Found at i:19224596 original size:15 final size:15
Alignment explanation
Indices: 19224570--19224610 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
19224560 TTATTAAATT
19224570 ATATATTTTAATTAAA
1 ATATATTTTAA-TAAA
19224586 ATATA-TTTAATAAA
1 ATATATTTTAATAAA
19224600 AT-TATGTTTAA
1 ATATAT-TTTAA
19224611 ATATGATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
13 2 0.09
14 6 0.26
15 10 0.43
16 5 0.22
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (15 bp):
ATATATTTTAATAAA
Found at i:19224653 original size:120 final size:117
Alignment explanation
Indices: 19224354--19224607 Score: 338
Period size: 120 Copynumber: 2.2 Consensus size: 117
19224344 AATCATAAAT
* *
19224354 TTTAATTAA-AATATAT-TTAATAT-TAATTATAGTATCATATATTATGATTTGAATAAATT-AT
1 TTTAA-TAATAAT-TATGTTAATATAT-ATTACAG-ATCATATATTATGATATGAATAAATTAAT
19224415 ATAAGAATATGAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATA
62 ATAAGAATATGAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATA
* * * * *
19224471 TTTATTAATATTTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATA
1 TTTAATAATAATTATGTTAA--TATATATTACAG-ATCATATATTATGATATGAATAAATTAATA
*
19224536 TAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATA
63 TAAGAATATGAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATA
19224591 TTTAATAA-AATTATGTT
1 TTTAATAATAATTATGTT
19224608 TAAATATGAT
Statistics
Matches: 123, Mismatches: 8, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
116 6 0.05
117 10 0.08
119 42 0.34
120 65 0.53
ACGTcount: A:0.44, C:0.01, G:0.06, T:0.49
Consensus pattern (117 bp):
TTTAATAATAATTATGTTAATATATATTACAGATCATATATTATGATATGAATAAATTAATATAA
GAATATGAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATA
Found at i:19224711 original size:154 final size:154
Alignment explanation
Indices: 19224545--19225011 Score: 866
Period size: 154 Copynumber: 3.0 Consensus size: 154
19224535 ATAAGAATAT
19224545 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAAAATTATGTTTA
1 TAATTA-TAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAAAATTATGTTTA
19224610 AATATGATTAAATTATTTATTACTGATAATAATAATCTTATT-AAATTTAAATAACAATAACAAT
65 AATATGATTAAATTATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAAT
19224674 AATCATTTACAAAAACAAATTTATGC
130 AATCATTTAC-AAAACAAATTTATGC
19224700 TAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAAAATTATGTTTAA
1 TAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAAAATTATGTTTAA
19224765 ATATGATTAAATTATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAATA
66 ATATGATTAAATTATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAATA
19224830 ATCATTTACAAAAC-AATTTATGC
131 ATCATTTACAAAACAAATTTATGC
19224853 TAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
1 TAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAA-AATTATGTTTA
*
19224918 AATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAAT
65 AATATGATTAAATTATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAAT
*
19224983 AATCATTTACCAAAACAATTTTATGC
130 AATCATTTA-CAAAACAAATTTATGC
19225009 TAA
1 TAA
19225012 GGGTATTCTA
Statistics
Matches: 306, Mismatches: 2, Indels: 7
0.97 0.01 0.02
Matches are distributed among these distances:
153 62 0.20
154 189 0.62
155 44 0.14
156 11 0.04
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.43
Consensus pattern (154 bp):
TAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAAAATTATGTTTAA
ATATGATTAAATTATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAATA
ATCATTTACAAAACAAATTTATGC
Found at i:19224739 original size:18 final size:18
Alignment explanation
Indices: 19224711--19224758 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 18
19224701 AATTATAAGA
19224711 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAATTATAT
19224728 ATTTTAATTAAA--ATAT
1 ATTTTAATTAAATTATAT
*
19224744 A-TTTAATAAAATTAT
1 ATTTTAATTAAATTAT
19224759 GTTTAAATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
15 9 0.33
16 5 0.19
17 7 0.26
18 6 0.22
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (18 bp):
ATTTTAATTAAATTATAT
Found at i:19224750 original size:15 final size:15
Alignment explanation
Indices: 19224724--19224764 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
19224714 TTATTAAATT
19224724 ATATATTTTAATTAAA
1 ATATATTTTAA-TAAA
19224740 ATATA-TTTAATAAA
1 ATATATTTTAATAAA
19224754 AT-TATGTTTAA
1 ATATAT-TTTAA
19224765 ATATGATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
13 2 0.09
14 6 0.26
15 10 0.43
16 5 0.22
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (15 bp):
ATATATTTTAATAAA
Found at i:19224892 original size:18 final size:17
Alignment explanation
Indices: 19224864--19224898 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
19224854 AATTATAAGA
*
19224864 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
19224881 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
19224899 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Done.