Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62811768
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 736185 characters in sequence are not A, C, G, or T
File 72 of 211
Found at i:19225128 original size:44 final size:45
Alignment explanation
Indices: 19225063--19225153 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
19225053 ACCTCTATTC
* * *
19225063 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
19225107 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
19225152 CA
1 CA
19225154 CCTCTAATCT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:19225155 original size:16 final size:16
Alignment explanation
Indices: 19225134--19225169 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
19225124 GATTAGCTAT
19225134 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
19225150 TACACCTCTAATCTAA
1 TACACCTCTAATCCAA
19225166 TACA
1 TACA
19225170 GCGAACCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.39, C:0.33, G:0.00, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:19231138 original size:17 final size:17
Alignment explanation
Indices: 19231104--19231135 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
19231094 ATTAATCAAA
19231104 TTAATTAAATTAATTTC
1 TTAATTAAATTAATTTC
19231121 TTAATTAAA-TAATTT
1 TTAATTAAATTAATTT
19231136 TCTCAACCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (17 bp):
TTAATTAAATTAATTTC
Found at i:19232930 original size:104 final size:103
Alignment explanation
Indices: 19232751--19232973 Score: 376
Period size: 104 Copynumber: 2.2 Consensus size: 103
19232741 TGTATATAAA
** * *
19232751 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGTGGTGCTATGTGCGTGATCCACCATATCTTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGTGGTGCTAAGTGCGTGATCCACCATATCTTT
19232816 GAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 GAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
19232854 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCA-TGGTGGTGCTAAGTGCG-TGATCCACCATATCT
19232918 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
64 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
19232958 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
19232974 GATATCCATT
Statistics
Matches: 113, Mismatches: 5, Indels: 3
0.93 0.04 0.02
Matches are distributed among these distances:
103 27 0.24
104 85 0.75
105 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.31, T:0.31
Consensus pattern (103 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGTGGTGCTAAGTGCGTGATCCACCATATCTTT
GAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:19233025 original size:71 final size:72
Alignment explanation
Indices: 19232892--19233043 Score: 252
Period size: 71 Copynumber: 2.1 Consensus size: 72
19232882 TCATTGGTGG
* *
19232892 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
19232957 GAGGGGT
66 GAGGGGT
***
19232964 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
19233028 GAGGGGT
66 GAGGGGT
19233035 TGCTAAGTG
1 TGCTAAGTG
19233044 ATGATTCCCC
Statistics
Matches: 75, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
71 45 0.60
72 30 0.40
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:19240486 original size:104 final size:104
Alignment explanation
Indices: 19240306--19240529 Score: 378
Period size: 104 Copynumber: 2.2 Consensus size: 104
19240296 TGTATATAAA
** * *
19240306 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
19240371 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
19240410 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCT
19240474 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
19240514 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
19240530 GATATCCATT
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
104 112 0.99
105 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:19240581 original size:71 final size:72
Alignment explanation
Indices: 19240448--19240599 Score: 252
Period size: 71 Copynumber: 2.1 Consensus size: 72
19240438 TCATTGGTGG
* *
19240448 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
19240513 GAGGGGT
66 GAGGGGT
***
19240520 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
19240584 GAGGGGT
66 GAGGGGT
19240591 TGCTAAGTG
1 TGCTAAGTG
19240600 ATGATTCCCC
Statistics
Matches: 75, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
71 45 0.60
72 30 0.40
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:19247745 original size:37 final size:37
Alignment explanation
Indices: 19247699--19247774 Score: 100
Period size: 38 Copynumber: 2.1 Consensus size: 37
19247689 AATAATAATG
*
19247699 TAATCATA-TTTTAATATAAGTATTATTAAATATAAAT
1 TAATAATATTTTTAATATAAGTATTATTAAAT-TAAAT
* * *
19247736 TAATAATATTTTTAATATAATTATTTTTATATTAAAT
1 TAATAATATTTTTAATATAAGTATTATTAAATTAAAT
19247773 TA
1 TA
19247775 TATTAAAATG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
37 14 0.41
38 20 0.59
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.51
Consensus pattern (37 bp):
TAATAATATTTTTAATATAAGTATTATTAAATTAAAT
Found at i:19247805 original size:34 final size:31
Alignment explanation
Indices: 19247760--19247868 Score: 112
Period size: 34 Copynumber: 3.3 Consensus size: 31
19247750 ATATAATTAT
*
19247760 TTTTATATTAAATTATATTAAAATGTTTAAAATA
1 TTTTATTTTAAATTATATTAAAA--TTT-AAATA
*
19247794 TTTTATTTTAAATTATATTTTGAAA-TTAAATA
1 TTTTATTTTAAATTATA--TTAAAATTTAAATA
*
19247826 TTTTATTTTAAATCATATTAAAACATTTTAAATA
1 TTTTATTTTAAATTATATT-AAA-A-TTTAAATA
19247860 TTTTATTTT
1 TTTTATTTT
19247869 TATATTTTGT
Statistics
Matches: 65, Mismatches: 4, Indels: 12
0.80 0.05 0.15
Matches are distributed among these distances:
30 2 0.03
31 2 0.03
32 22 0.34
33 2 0.03
34 32 0.49
36 5 0.08
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (31 bp):
TTTTATTTTAAATTATATTAAAATTTAAATA
Found at i:19250609 original size:16 final size:16
Alignment explanation
Indices: 19250588--19250621 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
19250578 ATGTGAAAAT
* *
19250588 AATGAGTTTTAATTGA
1 AATGAGATTTAATAGA
19250604 AATGAGATTTAATAGA
1 AATGAGATTTAATAGA
19250620 AA
1 AA
19250622 AAGGGAGAGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.18, T:0.35
Consensus pattern (16 bp):
AATGAGATTTAATAGA
Found at i:19255065 original size:43 final size:43
Alignment explanation
Indices: 19255018--19255325 Score: 307
Period size: 43 Copynumber: 7.2 Consensus size: 43
19255008 GCAAAGCTAT
* * * * *
19255018 TGACTTTTAGCAGCGCTTTTCTTATAAACGCCGCTATATAACA
1 TGACCTTTAGCGGCGCTTTTCTCACAAACGCCGCTATAGAACA
* * *
19255061 TGACTTTTAGCGGCACTTTT-TCACAAACGCCGTTATAGAACA
1 TGACCTTTAGCGGCGCTTTTCTCACAAACGCCGCTATAGAACA
* * * * * *
19255103 AGACATTTAGTGGCGTTTTTCCCACAAACGCCGCTATAAAACA
1 TGACCTTTAGCGGCGCTTTTCTCACAAACGCCGCTATAGAACA
* * * * *
19255146 AGACCTTTAGCGGCACTTTT-TCCGCAAGCGCCGCTACAGAACA
1 TGACCTTTAGCGGCGCTTTTCT-CACAAACGCCGCTATAGAACA
* * *
19255189 TGACCTTTAGCAGCGCTTTTCTCACAAATGCCGCTAAAGAACA
1 TGACCTTTAGCGGCGCTTTTCTCACAAACGCCGCTATAGAACA
* * * * *
19255232 AGACCTTTACCGGCGC-TTTCCCAAAAACGCCGCTACAGAACA
1 TGACCTTTAGCGGCGCTTTTCTCACAAACGCCGCTATAGAACA
* * * *
19255274 TGACCTTTAGCGGCGCTTTTCCCACAAACGCCACTAAAGAATA
1 TGACCTTTAGCGGCGCTTTTCTCACAAACGCCGCTATAGAACA
19255317 TGACCTTTA
1 TGACCTTTA
19255326 AAAAATATTT
Statistics
Matches: 218, Mismatches: 43, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
42 69 0.32
43 148 0.68
44 1 0.00
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (43 bp):
TGACCTTTAGCGGCGCTTTTCTCACAAACGCCGCTATAGAACA
Found at i:19255166 original size:85 final size:85
Alignment explanation
Indices: 19255018--19255305 Score: 335
Period size: 85 Copynumber: 3.4 Consensus size: 85
19255008 GCAAAGCTAT
* * ** * * * *
19255018 TGACTTTTAGCAGCGCTTTTCTTATAAACGCCGCTATATAACATGACTTTTAGCGGCACTTTTTC
1 TGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAAAACAAGACCTTTAGCGGCACTTTTTC
* *
19255083 ACAAACGCCGTTATAGAACA
66 ACAAACGCCGCTACAGAACA
* * * *
19255103 AGACATTTAGTGGCGTTTTTCCCACAAACGCCGCTATAAAACAAGACCTTTAGCGGCACTTTTTC
1 TGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAAAACAAGACCTTTAGCGGCACTTTTT-
* *
19255168 CGCAAGCGCCGCTACAGAACA
65 CACAAACGCCGCTACAGAACA
* * * * * **
19255189 TGACCTTTAGCAGCGCTTTTCTCACAAATGCCGCTA-AAGAACAAGACCTTTACCGGCGCTTTCC
1 TGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAA-AACAAGACCTTTAGCGGCACTTTTT
*
19255253 CAAAAACGCCGCTACAGAACA
65 CACAAACGCCGCTACAGAACA
19255274 TGACCTTTAGCGGCGCTTTTCCCACAAACGCC
1 TGACCTTTAGCGGCGCTTTTCCCACAAACGCC
19255306 ACTAAAGAAT
Statistics
Matches: 169, Mismatches: 32, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
85 102 0.60
86 67 0.40
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (85 bp):
TGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAAAACAAGACCTTTAGCGGCACTTTTTC
ACAAACGCCGCTACAGAACA
Found at i:19255252 original size:128 final size:128
Alignment explanation
Indices: 19255043--19255325 Score: 343
Period size: 128 Copynumber: 2.2 Consensus size: 128
19255033 CTTTTCTTAT
* * * * * *
19255043 AAACGCCGCTATATAACATGACTTTTAGCGGCACTTTTTCACAAACGCCGTTATAGAACAAGACA
1 AAACGCCGCTAAAGAACATGACCTTTAGCAGCACTTTTTCACAAACGCCGCTAAAGAACAAGACA
** * * * * *
19255108 TTTAGTGGCGTTTTTCCCACAAACGCCGCTATAAAACAAGACCTTTAGCGGCACTTTTTCCGC
66 TTTACCGGCGTCTTTCCCAAAAACGCCGCTACAAAACAAGACCTTTAGCGGCACTTTTCCCAC
* * * *
19255171 AAGCGCCGCTACAGAACATGACCTTTAGCAGCGCTTTTCTCACAAATGCCGCTAAAGAACAAGAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCAGCACTTTT-TCACAAACGCCGCTAAAGAACAAGAC
* * * *
19255236 CTTTACCGGCG-CTTTCCCAAAAACGCCGCTACAGAACATGACCTTTAGCGGCGCTTTTCCCAC
65 ATTTACCGGCGTCTTTCCCAAAAACGCCGCTACAAAACAAGACCTTTAGCGGCACTTTTCCCAC
* *
19255299 AAACGCCACTAAAGAATATGACCTTTA
1 AAACGCCGCTAAAGAACATGACCTTTA
19255326 AAAAATATTT
Statistics
Matches: 130, Mismatches: 24, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
128 99 0.76
129 31 0.24
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (128 bp):
AAACGCCGCTAAAGAACATGACCTTTAGCAGCACTTTTTCACAAACGCCGCTAAAGAACAAGACA
TTTACCGGCGTCTTTCCCAAAAACGCCGCTACAAAACAAGACCTTTAGCGGCACTTTTCCCAC
Found at i:19257212 original size:7 final size:7
Alignment explanation
Indices: 19257182--19257260 Score: 52
Period size: 7 Copynumber: 11.1 Consensus size: 7
19257172 ACTAATTAAT
19257182 CTAAACCC
1 CTAAA-CC
19257190 CTAAACC
1 CTAAACC
**
19257197 CTATCCC
1 CTAAACC
19257204 CTAAACC
1 CTAAACC
*
19257211 CTAAATC
1 CTAAACC
* **
19257218 ATAAAAT
1 CTAAACC
*
19257225 ATAAACC
1 CTAAACC
*
19257232 CTAACCC
1 CTAAACC
19257239 CT-AACTC
1 CTAAAC-C
19257246 CTAAACC
1 CTAAACC
*
19257253 TTAAACC
1 CTAAACC
19257260 C
1 C
19257261 CAACCCTTCC
Statistics
Matches: 54, Mismatches: 15, Indels: 5
0.73 0.20 0.07
Matches are distributed among these distances:
6 2 0.04
7 44 0.81
8 8 0.15
ACGTcount: A:0.41, C:0.39, G:0.00, T:0.20
Consensus pattern (7 bp):
CTAAACC
Found at i:19257338 original size:51 final size:51
Alignment explanation
Indices: 19257283--19257398 Score: 214
Period size: 51 Copynumber: 2.3 Consensus size: 51
19257273 CATAAACCAT
*
19257283 TTAAACCCTAAACCCATGATCCATAAACCTTAAAATAGTAACTCTTAAATC
1 TTAAACCCTAAACCCATAATCCATAAACCTTAAAATAGTAACTCTTAAATC
*
19257334 TTAAATCCTAAACCCATAATCCATAAACCTTAAAATAGTAACTCTTAAATC
1 TTAAACCCTAAACCCATAATCCATAAACCTTAAAATAGTAACTCTTAAATC
19257385 TTAAACCCTAAACC
1 TTAAACCCTAAACC
19257399 ATATACCCTA
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 62 1.00
ACGTcount: A:0.44, C:0.26, G:0.03, T:0.28
Consensus pattern (51 bp):
TTAAACCCTAAACCCATAATCCATAAACCTTAAAATAGTAACTCTTAAATC
Found at i:19257764 original size:40 final size:40
Alignment explanation
Indices: 19257720--19257821 Score: 123
Period size: 40 Copynumber: 2.5 Consensus size: 40
19257710 AATATTTTTT
* * * *
19257720 GCGGCGTTTTTGATAAAGTGCCGCTAAAGCTCAATCTATA
1 GCGGCGTTTTTCAAAAAGCGCCGCTAAAGCTCAACCTATA
* * **
19257760 GCGGCGTTTTTCAAAAAGCGCCGCTAATGGTTGACCTATA
1 GCGGCGTTTTTCAAAAAGCGCCGCTAAAGCTCAACCTATA
*
19257800 GCGGCGTTTTTCAAAAGGCGCC
1 GCGGCGTTTTTCAAAAAGCGCC
19257822 ACTAGTGGAG
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 53 1.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (40 bp):
GCGGCGTTTTTCAAAAAGCGCCGCTAAAGCTCAACCTATA
Found at i:19257896 original size:40 final size:40
Alignment explanation
Indices: 19257837--19257920 Score: 123
Period size: 40 Copynumber: 2.1 Consensus size: 40
19257827 TGGAGCGTCA
* * * *
19257837 TTTTCAAAAAGCGCTACTAATGCTCGATTTATAGCGGCGT
1 TTTTCAAAAAGCGCCACTAATGCTCAATCTATAGCAGCGT
*
19257877 TTTTCAAAAGGCGCCACTAATGCTCAATCTATAGCAGCGT
1 TTTTCAAAAAGCGCCACTAATGCTCAATCTATAGCAGCGT
19257917 TTTT
1 TTTT
19257921 TATCCAACCG
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.33
Consensus pattern (40 bp):
TTTTCAAAAAGCGCCACTAATGCTCAATCTATAGCAGCGT
Found at i:19261577 original size:21 final size:21
Alignment explanation
Indices: 19261499--19261577 Score: 70
Period size: 21 Copynumber: 3.8 Consensus size: 21
19261489 AAGTGCAGGG
*
19261499 AAGACATGGTCATGTGGCTGA
1 AAGACATGCTCATGTGGCTGA
* *
19261520 AAGACATGCTCGTGTGACTGA
1 AAGACATGCTCATGTGGCTGA
* * *
19261541 TATACATGGC-CATGTGGCTGG
1 AAGACAT-GCTCATGTGGCTGA
* *
19261562 GAGACATGCTCGTGTG
1 AAGACATGCTCATGTG
19261578 CGATCGAAAA
Statistics
Matches: 45, Mismatches: 11, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
20 2 0.04
21 41 0.91
22 2 0.04
ACGTcount: A:0.24, C:0.18, G:0.33, T:0.25
Consensus pattern (21 bp):
AAGACATGCTCATGTGGCTGA
Found at i:19264454 original size:59 final size:59
Alignment explanation
Indices: 19264385--19264528 Score: 225
Period size: 59 Copynumber: 2.4 Consensus size: 59
19264375 GTGGAATCAT
*
19264385 GATGGTCATCACCATCTCGTTTCATAATCGATAGCCGAAGCTATCCCTTTTCATAATTC
1 GATGGTCATCACCATCCCGTTTCATAATCGATAGCCGAAGCTATCCCTTTTCATAATTC
** *
19264444 GATGGTCATCACCATCCCGTTTCATAATCGATATTCGAAGCTATCCCTTTTCATAATTT
1 GATGGTCATCACCATCCCGTTTCATAATCGATAGCCGAAGCTATCCCTTTTCATAATTC
* * *
19264503 GATGGTCGTCACCATTCCTTTTCATA
1 GATGGTCATCACCATCCCGTTTCATA
19264529 GTTGATGGTT
Statistics
Matches: 78, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
59 78 1.00
ACGTcount: A:0.24, C:0.26, G:0.13, T:0.36
Consensus pattern (59 bp):
GATGGTCATCACCATCCCGTTTCATAATCGATAGCCGAAGCTATCCCTTTTCATAATTC
Found at i:19264489 original size:29 final size:29
Alignment explanation
Indices: 19264402--19264500 Score: 103
Period size: 29 Copynumber: 3.4 Consensus size: 29
19264392 ATCACCATCT
*
19264402 CGTTTCATAATCGATAGCCGAAGCTATCC
1 CGTTTCATAATCGATAGTCGAAGCTATCC
* * *
19264431 CTTTTCATAATTCGATGGTC-ATCA-CCATCC
1 CGTTTCATAA-TCGATAGTCGA--AGCTATCC
*
19264461 CGTTTCATAATCGATATTCGAAGCTATCC
1 CGTTTCATAATCGATAGTCGAAGCTATCC
*
19264490 CTTTTCATAAT
1 CGTTTCATAAT
19264501 TTGATGGTCG
Statistics
Matches: 56, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
28 1 0.02
29 32 0.57
30 22 0.39
31 1 0.02
ACGTcount: A:0.26, C:0.26, G:0.12, T:0.35
Consensus pattern (29 bp):
CGTTTCATAATCGATAGTCGAAGCTATCC
Found at i:19264542 original size:29 final size:29
Alignment explanation
Indices: 19264427--19264557 Score: 120
Period size: 29 Copynumber: 4.4 Consensus size: 29
19264417 AGCCGAAGCT
* *
19264427 ATCCCTTTTCATAATTCGATGGTCATCACC
1 ATCCCTTTTCATAGTT-GATGGTCGTCACC
* * * ** * *
19264457 ATCCCGTTTCATAATCGATATTCG-AAGCT
1 ATCCCTTTTCATAGTTGATGGTCGTCA-CC
*
19264486 ATCCCTTTTCATAATTTGATGGTCGTCACC
1 ATCCCTTTTCAT-AGTTGATGGTCGTCACC
* *
19264516 ATTCCTTTTCATAGTTGATGGTTGTCACC
1 ATCCCTTTTCATAGTTGATGGTCGTCACC
19264545 ATCCCTTTTCATA
1 ATCCCTTTTCATA
19264558 ATCGATAGTC
Statistics
Matches: 80, Mismatches: 18, Indels: 7
0.76 0.17 0.07
Matches are distributed among these distances:
28 1 0.01
29 44 0.55
30 34 0.43
31 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.12, T:0.40
Consensus pattern (29 bp):
ATCCCTTTTCATAGTTGATGGTCGTCACC
Found at i:19271673 original size:9 final size:9
Alignment explanation
Indices: 19271661--19271703 Score: 50
Period size: 9 Copynumber: 4.8 Consensus size: 9
19271651 AATAAATCAT
19271661 TAAAATTTA
1 TAAAATTTA
*
19271670 TAAAAGTTA
1 TAAAATTTA
*
19271679 TTAAATTTA
1 TAAAATTTA
* *
19271688 AAAAATATA
1 TAAAATTTA
19271697 TAAAATT
1 TAAAATT
19271704 AGGAAAAAAA
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (9 bp):
TAAAATTTA
Found at i:19271702 original size:18 final size:18
Alignment explanation
Indices: 19271634--19271703 Score: 54
Period size: 18 Copynumber: 3.8 Consensus size: 18
19271624 ACATGTGACA
**
19271634 AAAAATTATAAAA-AAAT
1 AAAAATTATAAAATTTAT
*
19271651 AATAAATCATTAAAATTTAT
1 AA-AAATTA-TAAAATTTAT
* *
19271671 AAAAGTTATTAAATTTA-
1 AAAAATTATAAAATTTAT
19271688 AAAAATATATAAAATT
1 AAAAAT-TATAAAATT
19271704 AGGAAAAAAA
Statistics
Matches: 41, Mismatches: 8, Indels: 7
0.73 0.14 0.12
Matches are distributed among these distances:
17 7 0.17
18 21 0.51
19 9 0.22
20 4 0.10
ACGTcount: A:0.63, C:0.01, G:0.01, T:0.34
Consensus pattern (18 bp):
AAAAATTATAAAATTTAT
Found at i:19271771 original size:19 final size:19
Alignment explanation
Indices: 19271735--19271772 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
19271725 TTGTAAAATT
*
19271735 TTATAAAAATCATTAAAAA
1 TTATAAAAATCATCAAAAA
19271754 TTAT-AAAATACATCAAAAA
1 TTATAAAAAT-CATCAAAAA
19271773 GACTCTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.63, C:0.08, G:0.00, T:0.29
Consensus pattern (19 bp):
TTATAAAAATCATCAAAAA
Found at i:19272383 original size:90 final size:89
Alignment explanation
Indices: 19272218--19272447 Score: 261
Period size: 90 Copynumber: 2.6 Consensus size: 89
19272208 TTTAGGGGTG
* * * *
19272218 GTTCAAATACCCAATTGAGTGCAACAAAAAAAGCAGGGGCTTACTTC-CTTTTTTAAAAAGTTAA
1 GTTCAAGTACCCAATTGAGTGC-A-AAAAAAAGTAGGGGCTTAATTCTCTTTTTGAAAAAGTTAA
* * *
19272282 AGAGTCTTTTTTTATTCATTTTGAAA
64 AGAGTCTTTTTTGATGCATTGTGAAA
* * * **
19272308 GTTCAAGTACTCAATTAAGTGCAAAAAAAGAGTAAGGGCTTAATTGCTCTTTTTGAAAAAGTTTG
1 GTTCAAGTACCCAATTGAGTGCAAAAAAA-AGTAGGGGCTTAATT-CTCTTTTTGAAAAAGTTAA
*
19272373 AGGGTC-TTTTTGATGCATTGTGAAA
64 AGAGTCTTTTTTGATGCATTGTGAAA
* *
19272398 GTTCAAGTACCCAAATGAGTAC-AAAAAAAGTAGGGGCTTAATT-TCTTTTT
1 GTTCAAGTACCCAATTGAGTGCAAAAAAAAGTAGGGGCTTAATTCTCTTTTT
19272448 CTGAAAAATT
Statistics
Matches: 119, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
86 7 0.06
88 20 0.17
89 19 0.16
90 54 0.45
91 19 0.16
ACGTcount: A:0.35, C:0.13, G:0.18, T:0.34
Consensus pattern (89 bp):
GTTCAAGTACCCAATTGAGTGCAAAAAAAAGTAGGGGCTTAATTCTCTTTTTGAAAAAGTTAAAG
AGTCTTTTTTGATGCATTGTGAAA
Found at i:19272849 original size:36 final size:36
Alignment explanation
Indices: 19272697--19273199 Score: 264
Period size: 36 Copynumber: 13.5 Consensus size: 36
19272687 GAAAAAATTT
* * * ***
19272697 GTAAATCAGCAAACTGAAAAAATGACAATTTTGATA
1 GTAAATCAGCGAACTGTAAAAATGACAGTCGCGATA
* * *
19272733 CTAAATTAGCGAACTGTAAAAATGACAGTCGAGATA
1 GTAAATCAGCGAACTGTAAAAATGACAGTCGCGATA
* * * *
19272769 GTAAATTAGCGAACTGCTAAAAAACCGA-AGGTCACAATA
1 GTAAATCAGCGAACTG-T-AAAAA-TGACA-GTCGCGATA
*
19272808 GTAAATCAGC-AGACTGTAAAAATGACAGTTGCGATA
1 GTAAATCAGCGA-ACTGTAAAAATGACAGTCGCGATA
* * * * *
19272844 GTAAATCAACGAACTAATAGAAACCTGA-AGGTCGCAATC
1 GTAAATCAGCGAACT-GTA-AAA-ATGACA-GTCGCGATA
* *
19272883 GAAAATTAACAGGTCGTAAATTGTTAGAAAACTGA-AGGTCGCGATA
1 GTAAA-T--CA-G-CG--AACTG-TA-AAAA-TGACA-GTCGCGATA
** * *
19272929 GTAAATCAGC-AGACCATAAAAATGACAGTCTCGGTA
1 GTAAATCAGCGA-ACTGTAAAAATGACAGTCGCGATA
* * * **
19272965 GTAAATCAACGAATTGT-AAAATGAAAGTCATGATA
1 GTAAATCAGCGAACTGTAAAAATGACAGTCGCGATA
* * *
19273000 GTAAATTAGCGAACTGTAAAAATGACAGTTGCAATA
1 GTAAATCAGCGAACTGTAAAAATGACAGTCGCGATA
* * *
19273036 GTAAATCAACGAACTGTTAGAAAACTGA-AGGCCGCAATA
1 GTAAATCAGCGAACTG-TA-AAAA-TGACA-GTCGCGATA
* ** * *
19273075 GTAAATCAGCGGACCATAAAAATGACAATCGCGAGA
1 GTAAATCAGCGAACTGTAAAAATGACAGTCGCGATA
* * * * *
19273111 GTAAATCAGCGAATTGTAAAAAAGAAAATCACGATA
1 GTAAATCAGCGAACTGTAAAAATGACAGTCGCGATA
* * *
19273147 ATAAATTAGCGAACTGTAAAAATGACAGTCGCAATA
1 GTAAATCAGCGAACTGTAAAAATGACAGTCGCGATA
* **
19273183 GGAAATCAATGAACTGT
1 GTAAATCAGCGAACTGT
19273200 TAGAAAATCA
Statistics
Matches: 352, Mismatches: 86, Indels: 58
0.71 0.17 0.12
Matches are distributed among these distances:
35 28 0.08
36 187 0.53
37 23 0.07
38 22 0.06
39 57 0.16
40 1 0.00
41 1 0.00
42 3 0.01
43 2 0.01
44 2 0.01
45 1 0.00
46 25 0.07
ACGTcount: A:0.45, C:0.15, G:0.19, T:0.21
Consensus pattern (36 bp):
GTAAATCAGCGAACTGTAAAAATGACAGTCGCGATA
Found at i:19272902 original size:75 final size:75
Alignment explanation
Indices: 19272745--19272894 Score: 176
Period size: 75 Copynumber: 2.0 Consensus size: 75
19272735 AAATTAGCGA
* * ** *
19272745 ACTGTAAAAATGACAGTCGAGATAGTAAATTAGCGAACTGCTAAAAAACCGAAGGTCACAATAGT
1 ACTGTAAAAATGACAGTCGAGATAGTAAATCAACGAACTAATAAAAAACCGAAGGTCACAATAGA
*
19272810 AAATCAGCAG
66 AAATCAACAG
* * * * *
19272820 ACTGTAAAAATGACAGTTGCGATAGTAAATCAACGAACTAAT-AGAAACCTGAAGGTCGCAATCG
1 ACTGTAAAAATGACAGTCGAGATAGTAAATCAACGAACTAATAAAAAACC-GAAGGTCACAATAG
*
19272884 AAAATTAACAG
65 AAAATCAACAG
19272895 GTCGTAAATT
Statistics
Matches: 62, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
74 6 0.10
75 56 0.90
ACGTcount: A:0.45, C:0.16, G:0.19, T:0.19
Consensus pattern (75 bp):
ACTGTAAAAATGACAGTCGAGATAGTAAATCAACGAACTAATAAAAAACCGAAGGTCACAATAGA
AAATCAACAG
Found at i:19273002 original size:35 final size:35
Alignment explanation
Indices: 19272963--19273232 Score: 107
Period size: 36 Copynumber: 7.4 Consensus size: 35
19272953 ACAGTCTCGG
*
19272963 TAGTAAATCAACGAATTGT-AAAATGAAAGTCATG-A
1 TAGTAAATCAACGAACTGTAAAAATGAAAGT--TGAA
* * *
19272998 TAGTAAATTAGCGAACTGTAAAAATGACAGTTGCAA
1 TAGTAAATCAACGAACTGTAAAAATGAAAGTTG-AA
* **
19273034 TAGTAAATCAACGAACTGTTAGAAAACTGAAGGCCGCAA
1 TAGTAAATCAACGAACTG-TA-AAAA-TGAAAGTTG-AA
* * ** * *
19273073 TAGTAAATCAGCGGACCATAAAAATGACAA-TCGCGA
1 TAGTAAATCAACGAACTGTAAAAATGA-AAGTTG-AA
* * * * * *
19273109 GAGTAAATCAGCGAATTGTAAAAAAGAAA-ATCACGA
1 TAGTAAATCAACGAACTGTAAAAATGAAAGTTGA--A
* * * * *
19273145 TAATAAATTAGCGAACTGTAAAAATGACAGTCGCAA
1 TAGTAAATCAACGAACTGTAAAAATGAAAGTTG-AA
* * * *
19273181 TAGGAAATCAATGAACTGTTAGAAAATCAAAGGTCGCAA
1 TAGTAAATCAACGAACTG-TA-AAAATGAAA-GTTG-AA
*
19273220 TAGGAAATCAACG
1 TAGTAAATCAACG
19273233 GACCATATGT
Statistics
Matches: 177, Mismatches: 44, Indels: 24
0.72 0.18 0.10
Matches are distributed among these distances:
34 2 0.01
35 18 0.10
36 93 0.53
37 9 0.05
38 14 0.08
39 41 0.23
ACGTcount: A:0.47, C:0.14, G:0.19, T:0.20
Consensus pattern (35 bp):
TAGTAAATCAACGAACTGTAAAAATGAAAGTTGAA
Found at i:19273219 original size:147 final size:146
Alignment explanation
Indices: 19272904--19273239 Score: 487
Period size: 147 Copynumber: 2.3 Consensus size: 146
19272894 GGTCGTAAAT
* * * *
19272904 TGTTAGAAAACTGAAGGTCGCGATAGTAAATCAGCAGACCATAAAAATGACAGTCTCGGTAGTAA
1 TGTTAGAAAACTGAAGGTCGCAATAGTAAATCAGCGGACCATAAAAATGACAATCGCGGTAGTAA
* * * * *
19272969 ATCAACGAATTGTAAAATGAAAGTCATGATAGTAAATTAGCGAACTGTAAAAATGACAGTTGCAA
66 ATCAACGAATTGTAAAAAGAAAATCACGATAATAAATTAGCGAACTGTAAAAATGACAGTCGCAA
*
19273034 TAGTAAATCAACGAAC
131 TAGGAAATCAACGAAC
*
19273050 TGTTAGAAAACTGAAGGCCGCAATAGTAAATCAGCGGACCATAAAAATGACAATCGCGAG-AGTA
1 TGTTAGAAAACTGAAGGTCGCAATAGTAAATCAGCGGACCATAAAAATGACAATCGCG-GTAGTA
*
19273114 AATCAGCGAATTGTAAAAAAGAAAATCACGATAATAAATTAGCGAACTGTAAAAATGACAGTCGC
65 AATCAACGAATTGT-AAAAAGAAAATCACGATAATAAATTAGCGAACTGTAAAAATGACAGTCGC
*
19273179 AATAGGAAATCAATGAAC
129 AATAGGAAATCAACGAAC
* * *
19273197 TGTTAGAAAA-TCAAAGGTCGCAATAGGAAATCAACGGACCATA
1 TGTTAGAAAACT-GAAGGTCGCAATAGTAAATCAGCGGACCATA
19273240 TGTAACAGCT
Statistics
Matches: 170, Mismatches: 17, Indels: 5
0.89 0.09 0.03
Matches are distributed among these distances:
146 71 0.42
147 99 0.58
ACGTcount: A:0.45, C:0.15, G:0.20, T:0.20
Consensus pattern (146 bp):
TGTTAGAAAACTGAAGGTCGCAATAGTAAATCAGCGGACCATAAAAATGACAATCGCGGTAGTAA
ATCAACGAATTGTAAAAAGAAAATCACGATAATAAATTAGCGAACTGTAAAAATGACAGTCGCAA
TAGGAAATCAACGAAC
Found at i:19274588 original size:25 final size:25
Alignment explanation
Indices: 19274568--19274632 Score: 121
Period size: 25 Copynumber: 2.6 Consensus size: 25
19274558 TGGCTCGCAA
19274568 GAGCTTCCCGTTATACAGCTCATAT
1 GAGCTTCCCGTTATACAGCTCATAT
19274593 GAGCTTCCCGTTATACAGCTCATAT
1 GAGCTTCCCGTTATACAGCTCATAT
*
19274618 GAGCTTCCCATTATA
1 GAGCTTCCCGTTATA
19274633 TGTTTTGAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.25, C:0.28, G:0.15, T:0.32
Consensus pattern (25 bp):
GAGCTTCCCGTTATACAGCTCATAT
Found at i:19277819 original size:50 final size:50
Alignment explanation
Indices: 19277761--19277866 Score: 133
Period size: 50 Copynumber: 2.1 Consensus size: 50
19277751 TATTGAGGTT
* * * * *
19277761 ATGAGAGGTCTCATGTAAGACCATGTCTCGG-ACATGGCGTTGGCACCGAG
1 ATGAGAGGTCCCACGTAAGACCATATCT-GGAACATGGCATGGGCACCGAG
* *
19277811 ATGAGAGGTCCCCCGTAAGACCATATCTGGAACATGGCATGGGCACCGAT
1 ATGAGAGGTCCCACGTAAGACCATATCTGGAACATGGCATGGGCACCGAG
19277861 ATGAGA
1 ATGAGA
19277867 ACTGTAATGA
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
49 2 0.04
50 46 0.96
ACGTcount: A:0.27, C:0.23, G:0.30, T:0.20
Consensus pattern (50 bp):
ATGAGAGGTCCCACGTAAGACCATATCTGGAACATGGCATGGGCACCGAG
Found at i:19278140 original size:24 final size:24
Alignment explanation
Indices: 19278113--19278174 Score: 76
Period size: 24 Copynumber: 2.6 Consensus size: 24
19278103 TTTTTATGTT
*
19278113 TTATATATATTATTTTAT-TATATA
1 TTATATATATTATATTATAT-TATA
19278137 TTATATTATATTA-ATTATATTATA
1 TTATA-TATATTATATTATATTATA
19278161 TTATAT-TATTATAT
1 TTATATATATTATAT
19278175 ATTAAAAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
22 5 0.15
23 3 0.09
24 18 0.53
25 8 0.24
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (24 bp):
TTATATATATTATATTATATTATA
Found at i:19278141 original size:5 final size:5
Alignment explanation
Indices: 19278113--19278178 Score: 77
Period size: 5 Copynumber: 13.6 Consensus size: 5
19278103 TTTTTATGTT
*
19278113 TTATA -TATA TTATT TTAT- TATATA TTATA TTATA TTA-A TTATA TTATA
1 TTATA TTATA TTATA TTATA T-TATA TTATA TTATA TTATA TTATA TTATA
19278161 TTATA TTAT- TATATA TTA
1 TTATA TTATA T-TATA TTA
19278179 AAAAAACTAA
Statistics
Matches: 54, Mismatches: 1, Indels: 12
0.81 0.01 0.18
Matches are distributed among these distances:
4 10 0.19
5 42 0.78
6 2 0.04
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TTATA
Found at i:19278159 original size:29 final size:28
Alignment explanation
Indices: 19278112--19278179 Score: 77
Period size: 29 Copynumber: 2.4 Consensus size: 28
19278102 ATTTTTATGT
*
19278112 TTTATA-TATATTATTTTAT-TATATATTA
1 TTTATATTA-ATTATATTATAT-TATATTA
19278140 TATTATATTAATTATATTATATTATATTA
1 T-TTATATTAATTATATTATATTATATTA
19278169 TTATATATTAA
1 TT-TATATTAA
19278180 AAAAACTAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
28 2 0.06
29 30 0.86
30 3 0.09
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (28 bp):
TTTATATTAATTATATTATATTATATTA
Found at i:19278371 original size:22 final size:22
Alignment explanation
Indices: 19278332--19278379 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
19278322 AAACAAAAGA
19278332 AAAAGAAACAAAAGAAGA-ACAG
1 AAAAGAAACAAAAGAAGAGAC-G
*
19278354 AAAAGAAAC-AGAGAAAGAGACG
1 AAAAGAAACAAAAG-AAGAGACG
19278376 AAAA
1 AAAA
19278380 CAGGGGAAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
21 3 0.13
22 18 0.78
23 2 0.09
ACGTcount: A:0.71, C:0.08, G:0.21, T:0.00
Consensus pattern (22 bp):
AAAAGAAACAAAAGAAGAGACG
Found at i:19278762 original size:22 final size:24
Alignment explanation
Indices: 19278734--19278777 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
19278724 TATGGCAAGA
19278734 AATTAAG-TAGAAAAG-AAGTATG
1 AATTAAGTTAGAAAAGTAAGTATG
19278756 AATTAAGTTAGAAAAGTAAGTA
1 AATTAAGTTAGAAAAGTAAGTA
19278778 AGCTTAGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 7 0.35
23 8 0.40
24 5 0.25
ACGTcount: A:0.55, C:0.00, G:0.20, T:0.25
Consensus pattern (24 bp):
AATTAAGTTAGAAAAGTAAGTATG
Found at i:19289284 original size:102 final size:102
Alignment explanation
Indices: 19289154--19289352 Score: 371
Period size: 102 Copynumber: 2.0 Consensus size: 102
19289144 GTCTCTTTAT
19289154 TTTTCTTGAAAATGTCCTCTTTTCGACATTCCACCCAAATCCAAGTAACATAAATACCAAGGATC
1 TTTTCTTGAAAATGTCCTCTTTTCGACATTCCACCCAAATCCAAGTAACATAAATACCAAGGATC
*
19289219 AGAGTACTTTTGGCCCTCAAATTGAGCAATAATAACA
66 AGAGAACTTTTGGCCCTCAAATTGAGCAATAATAACA
* *
19289256 TTTTCTTGAAAATGTCCTCTTTTTGACATTCCACCCAAATCCAAGTAACATAAATGCCAAGGATC
1 TTTTCTTGAAAATGTCCTCTTTTCGACATTCCACCCAAATCCAAGTAACATAAATACCAAGGATC
19289321 AGAGAACTTTTGGCCCTCAAATTGAGCAATAA
66 AGAGAACTTTTGGCCCTCAAATTGAGCAATAA
19289353 CAGCATCAAG
Statistics
Matches: 94, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
102 94 1.00
ACGTcount: A:0.35, C:0.23, G:0.13, T:0.30
Consensus pattern (102 bp):
TTTTCTTGAAAATGTCCTCTTTTCGACATTCCACCCAAATCCAAGTAACATAAATACCAAGGATC
AGAGAACTTTTGGCCCTCAAATTGAGCAATAATAACA
Found at i:19291567 original size:26 final size:26
Alignment explanation
Indices: 19291538--19291603 Score: 73
Period size: 26 Copynumber: 2.5 Consensus size: 26
19291528 AGTTTGGTAA
*
19291538 TGCTTTTAAAAAGTGA-TTTTGAA-AAG
1 TGCTTTTGAAAAGT-ACTTTT-AAGAAG
* *
19291564 TGCTGTGGAAAAGTACTTTTAAGAAG
1 TGCTTTTGAAAAGTACTTTTAAGAAG
19291590 TGCTTTTGAAAAGT
1 TGCTTTTGAAAAGT
19291604 TTGGTTTAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
25 3 0.09
26 30 0.91
ACGTcount: A:0.35, C:0.06, G:0.23, T:0.36
Consensus pattern (26 bp):
TGCTTTTGAAAAGTACTTTTAAGAAG
Found at i:19291832 original size:24 final size:24
Alignment explanation
Indices: 19291798--19291843 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
19291788 CATATGAAAT
* *
19291798 ATAAATTTTAAATATTTTTAAACA
1 ATAAATATTAAATATTTATAAACA
*
19291822 ATAAATATTAATTATTTATAAA
1 ATAAATATTAAATATTTATAAA
19291844 ATGTAATTAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (24 bp):
ATAAATATTAAATATTTATAAACA
Found at i:19292665 original size:15 final size:16
Alignment explanation
Indices: 19292640--19292679 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
19292630 TTGATAAACT
*
19292640 AAAAAATTAAGTGTTG
1 AAAAAATTAAGTGCTG
19292656 AAAAAA-TAAGTGCTG
1 AAAAAATTAAGTGCTG
19292671 -AAAAATTAA
1 AAAAAATTAA
19292680 TTATTAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 5 0.23
15 11 0.50
16 6 0.27
ACGTcount: A:0.57, C:0.03, G:0.15, T:0.25
Consensus pattern (16 bp):
AAAAAATTAAGTGCTG
Found at i:19293158 original size:14 final size:15
Alignment explanation
Indices: 19293136--19293176 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 15
19293126 ATGCTTTTTG
*
19293136 TATATTTTTA-ATTA
1 TATAATTTTATATTA
*
19293150 TATAATTTTATATTT
1 TATAATTTTATATTA
19293165 TAT-ATTTTATAT
1 TATAATTTTATAT
19293177 ATCTTTCAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 18 0.75
15 6 0.25
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (15 bp):
TATAATTTTATATTA
Found at i:19298469 original size:21 final size:21
Alignment explanation
Indices: 19298445--19298484 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
19298435 TTCTAGTTGT
* *
19298445 TCCGGTGGGGATTCTGGTTCC
1 TCCGGTAGGGAATCTGGTTCC
19298466 TCCGGTAGGGAATCTGGTT
1 TCCGGTAGGGAATCTGGTT
19298485 GTCGGTGTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.10, C:0.20, G:0.38, T:0.33
Consensus pattern (21 bp):
TCCGGTAGGGAATCTGGTTCC
Found at i:19298725 original size:18 final size:18
Alignment explanation
Indices: 19298698--19298735 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
19298688 TAAAAAAGAA
* *
19298698 ACATATAAGGGTTAGGAT
1 ACATAAAAGGGCTAGGAT
19298716 ACATAAAAGGGCTAGGAT
1 ACATAAAAGGGCTAGGAT
19298734 AC
1 AC
19298736 GCACTTGGCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.42, C:0.11, G:0.26, T:0.21
Consensus pattern (18 bp):
ACATAAAAGGGCTAGGAT
Found at i:19299399 original size:7 final size:7
Alignment explanation
Indices: 19299389--19299421 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
19299379 CATAATACAT
19299389 AATACTA
1 AATACTA
19299396 AATACTA
1 AATACTA
19299403 AATACTA
1 AATACTA
19299410 AATACTA
1 AATACTA
19299417 AATAC
1 AATAC
19299422 CAATTGACTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (7 bp):
AATACTA
Found at i:19316157 original size:24 final size:24
Alignment explanation
Indices: 19316125--19316170 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
19316115 TGCCACAAAT
19316125 CCTGAAGGTTACAAACTTTATCAA
1 CCTGAAGGTTACAAACTTTATCAA
19316149 CCTGAAGGTTACAAACTTTATC
1 CCTGAAGGTTACAAACTTTATC
19316171 TTCCATACCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.35, C:0.22, G:0.13, T:0.30
Consensus pattern (24 bp):
CCTGAAGGTTACAAACTTTATCAA
Found at i:19320430 original size:20 final size:19
Alignment explanation
Indices: 19320394--19320432 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
19320384 AATTTCAAAA
*
19320394 TTATAAAATTTGGAATTTT
1 TTATAAAATTTGAAATTTT
*
19320413 TTATAAATATTTTAAATTTT
1 TTATAAA-ATTTGAAATTTT
19320433 AAAAATTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.56
Consensus pattern (19 bp):
TTATAAAATTTGAAATTTT
Found at i:19320472 original size:20 final size:20
Alignment explanation
Indices: 19320411--19320464 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
19320401 ATTTGGAATT
*
19320411 TTTTATAAA-TATTTT-AAA
1 TTTTAAAAATTATTTTAAAA
19320429 TTTTAAAAATTATTTTAAAA
1 TTTTAAAAATTATTTTAAAA
*
19320449 TTTTGAAAATTATTTT
1 TTTTAAAAATTATTTT
19320465 GTAATTTTTG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.25
19 6 0.19
20 18 0.56
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.56
Consensus pattern (20 bp):
TTTTAAAAATTATTTTAAAA
Found at i:19327396 original size:22 final size:22
Alignment explanation
Indices: 19327351--19327413 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 22
19327341 TATGTATATG
19327351 TTTATAAAATGTATTATAATTTATAA
1 TTTATAAAAT-T-TTAT-ATTTAT-A
*
19327377 TTTATAAAATTTTAT-TTTATG
1 TTTATAAAATTTTATATTTATA
19327398 TTT-TAAAATTTT-TATT
1 TTTATAAAATTTTATATT
19327414 CATTTCGATT
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
19 1 0.03
20 11 0.31
21 3 0.09
22 5 0.14
24 4 0.11
25 1 0.03
26 10 0.29
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (22 bp):
TTTATAAAATTTTATATTTATA
Found at i:19333504 original size:18 final size:18
Alignment explanation
Indices: 19333481--19333524 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
19333471 AGTTAATGAC
*
19333481 TTGAAATGGCAAATGATA
1 TTGAAATGACAAATGATA
* *
19333499 TTGAAATAACAAATGTTA
1 TTGAAATGACAAATGATA
19333517 -TGAAATGA
1 TTGAAATGA
19333525 AATTAAATGT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 7 0.32
18 15 0.68
ACGTcount: A:0.48, C:0.05, G:0.18, T:0.30
Consensus pattern (18 bp):
TTGAAATGACAAATGATA
Found at i:19337125 original size:13 final size:13
Alignment explanation
Indices: 19337107--19337133 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
19337097 CCACCTTAGA
19337107 AATCCAACCATAT
1 AATCCAACCATAT
19337120 AATCCAACCATAT
1 AATCCAACCATAT
19337133 A
1 A
19337134 CTTTTATTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.30, G:0.00, T:0.22
Consensus pattern (13 bp):
AATCCAACCATAT
Found at i:19338014 original size:16 final size:16
Alignment explanation
Indices: 19337993--19338038 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
19337983 TTATTAAATT
19337993 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
19338009 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
*
19338024 AT-TATGTTAAATTAT
1 ATATAT-TTTAATTAT
19338039 CTATATTATG
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
14 2 0.08
15 11 0.44
16 12 0.48
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:19338047 original size:107 final size:108
Alignment explanation
Indices: 19337933--19338143 Score: 388
Period size: 107 Copynumber: 2.0 Consensus size: 108
19337923 TATAGTATTA
* * *
19337933 TATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATTATATA
1 TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAAAATTTTATTAAATTATATA
19337998 TTTTAATTATAATATATTTAATAATAATTATG-TTAAATTATC
66 TTTTAATTATAATATATTTAATAATAATTATGTTTAAATTATC
19338040 TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAAAATTTTATTAAATTATATA
1 TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAAAATTTTATTAAATTATATA
19338105 TTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
66 TTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
19338144 ATGATTAAAT
Statistics
Matches: 100, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
107 94 0.94
108 6 0.06
ACGTcount: A:0.44, C:0.01, G:0.05, T:0.49
Consensus pattern (108 bp):
TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAAAATTTTATTAAATTATATA
TTTTAATTATAATATATTTAATAATAATTATGTTTAAATTATC
Found at i:19338121 original size:16 final size:16
Alignment explanation
Indices: 19338100--19338141 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
19338090 TTATTAAATT
*
19338100 ATATATTTTAATTATA
1 ATATATTTTAATAATA
19338116 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
19338131 AT-TATGTTTAA
1 ATATAT-TTTAA
19338142 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:19338126 original size:15 final size:15
Alignment explanation
Indices: 19338091--19338132 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
19338081 TTAAAAATTT
*
19338091 TATTAAATTAT-ATA
1 TATTTAATTATAATA
19338105 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
19338119 TATTTAATAATAAT
1 TATTTAATTATAAT
19338133 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:19338336 original size:44 final size:45
Alignment explanation
Indices: 19338286--19338376 Score: 123
Period size: 45 Copynumber: 2.0 Consensus size: 45
19338276 ACCTTTATTT
*
19338286 CATTCAACCAAACA-TAACATTAG-TATTACGCCTCTATTCCATTA
1 CATTCAACCAAACAGT-ACATTAGCTATTACACCTCTATTCCATTA
** *
19338330 CATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCCATTA
1 CATTCAACCAAACAGTACATTAGCTATTACACCTCTATTCCATTA
19338375 CA
1 CA
19338377 CCTCTAATCC
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
44 18 0.44
45 23 0.56
ACGTcount: A:0.34, C:0.27, G:0.05, T:0.33
Consensus pattern (45 bp):
CATTCAACCAAACAGTACATTAGCTATTACACCTCTATTCCATTA
Found at i:19338376 original size:16 final size:16
Alignment explanation
Indices: 19338357--19338424 Score: 100
Period size: 16 Copynumber: 4.2 Consensus size: 16
19338347 GATTTGCTAT
* *
19338357 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
19338373 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
* *
19338389 TACACTTCCAATCCAA
1 TACACCTCTAATCCAA
19338405 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
19338421 TACA
1 TACA
19338425 GCGAACCAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 46 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:19346532 original size:9 final size:9
Alignment explanation
Indices: 19346518--19346543 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
19346508 GGGGAGGCAA
19346518 GAAGAAAGG
1 GAAGAAAGG
19346527 GAAGAAAGG
1 GAAGAAAGG
19346536 GAAGAAAG
1 GAAGAAAG
19346544 TTAGTCCAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.42, T:0.00
Consensus pattern (9 bp):
GAAGAAAGG
Found at i:19348397 original size:8 final size:8
Alignment explanation
Indices: 19348384--19348431 Score: 53
Period size: 8 Copynumber: 5.9 Consensus size: 8
19348374 TAAAGCTTAT
19348384 AAAAAATA
1 AAAAAATA
19348392 AAAAAATA
1 AAAAAATA
*
19348400 GAAAATATTA
1 -AAAA-AATA
19348410 AAAAAAT-
1 AAAAAATA
*
19348417 AGAAAATA
1 AAAAAATA
19348425 AAAAAAT
1 AAAAAAT
19348432 GATAGATTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
7 6 0.18
8 16 0.48
9 8 0.24
10 3 0.09
ACGTcount: A:0.79, C:0.00, G:0.04, T:0.17
Consensus pattern (8 bp):
AAAAAATA
Found at i:19348413 original size:18 final size:18
Alignment explanation
Indices: 19348390--19348424 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
19348380 TTATAAAAAA
19348390 TAAAAAAATAGAAAATAT
1 TAAAAAAATAGAAAATAT
19348408 TAAAAAAATAGAAAATA
1 TAAAAAAATAGAAAATA
19348425 AAAAAATGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.20
Consensus pattern (18 bp):
TAAAAAAATAGAAAATAT
Found at i:19348437 original size:18 final size:16
Alignment explanation
Indices: 19348386--19348430 Score: 65
Period size: 18 Copynumber: 2.8 Consensus size: 16
19348376 AAGCTTATAA
19348386 AAAAT-AAAAAAATAG
1 AAAATAAAAAAAATAG
19348401 AAAATATTAAAAAAATAG
1 AAAATA--AAAAAAATAG
19348419 AAAATAAAAAAA
1 AAAATAAAAAAA
19348431 TGATAGATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
15 5 0.19
16 6 0.22
18 16 0.59
ACGTcount: A:0.80, C:0.00, G:0.04, T:0.16
Consensus pattern (16 bp):
AAAATAAAAAAAATAG
Found at i:19353978 original size:15 final size:15
Alignment explanation
Indices: 19353955--19353984 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
19353945 TGTTTTCAGC
*
19353955 TTCTTTTTTCTCTCA
1 TTCTGTTTTCTCTCA
19353970 TTCTGTTTTCTCTCA
1 TTCTGTTTTCTCTCA
19353985 GTTTTCTCTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.07, C:0.27, G:0.03, T:0.63
Consensus pattern (15 bp):
TTCTGTTTTCTCTCA
Found at i:19354291 original size:18 final size:20
Alignment explanation
Indices: 19354265--19354307 Score: 54
Period size: 18 Copynumber: 2.2 Consensus size: 20
19354255 AGATATTCTA
*
19354265 TTTTGTTTT-TTAGCTT-TG
1 TTTTCTTTTATTAGCTTGTG
*
19354283 TTTTCTTTTATTTGCTTGTG
1 TTTTCTTTTATTAGCTTGTG
19354303 TTTTC
1 TTTTC
19354308 ACAGTTTGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 8 0.38
19 6 0.29
20 7 0.33
ACGTcount: A:0.05, C:0.09, G:0.14, T:0.72
Consensus pattern (20 bp):
TTTTCTTTTATTAGCTTGTG
Found at i:19354718 original size:73 final size:73
Alignment explanation
Indices: 19354634--19354779 Score: 265
Period size: 73 Copynumber: 2.0 Consensus size: 73
19354624 GACGATATGT
* *
19354634 GTGCTTGGTAGGAGAGACGGAAAAATGGTAAGAAAATCACTTTTTCTTTCCATGCATTGCTTGTT
1 GTGCTTGGTAGGAGAGACAGAAAAATGGTAAGAAAATAACTTTTTCTTTCCATGCATTGCTTGTT
19354699 AGAGTTGA
66 AGAGTTGA
*
19354707 GTGCTTGGTAGGAGAGACAGAAAATTGGTAAGAAAATAACTTTTTCTTTCCATGCATTGCTTGTT
1 GTGCTTGGTAGGAGAGACAGAAAAATGGTAAGAAAATAACTTTTTCTTTCCATGCATTGCTTGTT
19354772 AGAGTTGA
66 AGAGTTGA
19354780 AAATTAGAAG
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
73 70 1.00
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.34
Consensus pattern (73 bp):
GTGCTTGGTAGGAGAGACAGAAAAATGGTAAGAAAATAACTTTTTCTTTCCATGCATTGCTTGTT
AGAGTTGA
Found at i:19354804 original size:73 final size:73
Alignment explanation
Indices: 19354653--19354797 Score: 193
Period size: 73 Copynumber: 2.0 Consensus size: 73
19354643 AGGAGAGACG
* * *** * *
19354653 GAAAAATGGTAAGAAAATCACTTTTTCTTTCCATGCATTGCTTGTTAGAGTTGAGTGCTTGGTAG
1 GAAAATTGGTAAGAAAATAACTTTTTCTTTCCATGCATTGCTTGTTAGAGTTGAGAAATTAGAAG
* *
19354718 GAGAGACA
66 GAAAGAAA
19354726 GAAAATTGGTAAGAAAATAACTTTTTCTTTCCATGCATTGCTTGTTAGAGTTGA-AAATTAGAAG
1 GAAAATTGGTAAGAAAATAACTTTTTCTTTCCATGCATTGCTTGTTAGAGTTGAGAAATTAGAAG
*
19354790 TAAAGAAA
66 GAAAGAAA
19354798 ATAAAATATT
Statistics
Matches: 62, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
72 10 0.16
73 52 0.84
ACGTcount: A:0.35, C:0.10, G:0.21, T:0.33
Consensus pattern (73 bp):
GAAAATTGGTAAGAAAATAACTTTTTCTTTCCATGCATTGCTTGTTAGAGTTGAGAAATTAGAAG
GAAAGAAA
Found at i:19355073 original size:14 final size:14
Alignment explanation
Indices: 19355054--19355081 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
19355044 TAGTACGTGG
19355054 AACAACTACTGTTT
1 AACAACTACTGTTT
19355068 AACAACTACTGTTT
1 AACAACTACTGTTT
19355082 CTAGGAAGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.21, G:0.07, T:0.36
Consensus pattern (14 bp):
AACAACTACTGTTT
Found at i:19358578 original size:4 final size:4
Alignment explanation
Indices: 19358569--19359931 Score: 2208
Period size: 4 Copynumber: 341.0 Consensus size: 4
19358559 AAAAACATTA
* *
19358569 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT AAAA ACATT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACA-T
19358618 AACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 -ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
19358667 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
19358715 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ATAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * * * *
19358763 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAC ACAC ATAC ACAC ACAC
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
19358811 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
19358859 ACAT ATAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* *
19358907 ACAT ACAT ACAT ACAT ACAT ACAT ACCT ATAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * * * * *
19358955 ACAT ACAC ACAC ACAT ACAC ACAC ACAT AC-- ACAC ACAT ACAC ACAC
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
19359001 ACAC ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
19359049 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
19359097 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * *
19359145 AAAA ACATT AACAT ACAT ACAT ACAT ACAT ACAT ACAT AC-- ACAC ACAT
1 ACAT ACA-T -ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
19359193 ACAT ACAT ATAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACA-
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
19359240 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
19359288 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* *
19359336 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAC ACAC
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * *
19359384 ACAT ACAC ACAC ACAT ACAC ACAC ACAT AC-- ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
19359430 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
19359478 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
19359526 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
19359574 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* *
19359622 ACAT ACAT ACAT ACAT ACAT ACAT AAAA ACATT AACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACA-T -ACAT ACAT ACAT ACAT
19359672 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * *
19359720 ACAT ACAT AAAA ACATT AACAT ACAT ACAA ACAT ACAT ACAT ACAT ACATT
1 ACAT ACAT ACAT ACA-T -ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACA-T
19359771 AACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 -ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
19359820 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * *
19359868 AC-- ACAC ACAT ACAC ACAT ACAT AC-- ACAC ACAC ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
19359912 ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT
19359932 TGAACTCGAA
Statistics
Matches: 1288, Mismatches: 50, Indels: 42
0.93 0.04 0.03
Matches are distributed among these distances:
2 10 0.01
3 3 0.00
4 1254 0.97
5 6 0.00
6 15 0.01
ACGTcount: A:0.51, C:0.26, G:0.00, T:0.23
Consensus pattern (4 bp):
ACAT
Found at i:19358966 original size:2 final size:2
Alignment explanation
Indices: 19358959--19359007 Score: 71
Period size: 2 Copynumber: 24.5 Consensus size: 2
19358949 ATACATACAT
* * *
19358959 AC AC AC AC AC AT AC AC AC AC AC AT AC AC AC AC AT AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
19359001 AC AC AC A
1 AC AC AC A
19359008 TACATACATA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.43, G:0.00, T:0.06
Consensus pattern (2 bp):
AC
Found at i:19359383 original size:2 final size:2
Alignment explanation
Indices: 19359376--19359416 Score: 55
Period size: 2 Copynumber: 20.5 Consensus size: 2
19359366 ATACATACAT
* * *
19359376 AC AC AC AC AC AT AC AC AC AC AC AT AC AC AC AC AC AT AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
19359417 TACATACATA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.41, G:0.00, T:0.07
Consensus pattern (2 bp):
AC
Found at i:19359391 original size:6 final size:6
Alignment explanation
Indices: 19359372--19359420 Score: 71
Period size: 6 Copynumber: 8.2 Consensus size: 6
19359362 ATACATACAT
* * *
19359372 ACATAC ACACAC ACATAC ACACAC ACATAC ACACAC ACATAC ACATAC
1 ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC
19359420 A
1 A
19359421 TACATACATA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.51, C:0.39, G:0.00, T:0.10
Consensus pattern (6 bp):
ACATAC
Found at i:19360625 original size:27 final size:26
Alignment explanation
Indices: 19360589--19360642 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 26
19360579 CTCCTTCCAC
*
19360589 TAGTTTATTA-TATATAGTATGATTAA
1 TAGTTTATTAGTATA-AGTATAATTAA
*
19360615 TAGTTTAATTAGTTTAAGTATAATTAA
1 TAGTTT-ATTAGTATAAGTATAATTAA
19360642 T
1 T
19360643 TAATAAGACA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 6 0.25
27 15 0.62
28 3 0.12
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.50
Consensus pattern (26 bp):
TAGTTTATTAGTATAAGTATAATTAA
Found at i:19367503 original size:16 final size:16
Alignment explanation
Indices: 19367482--19367514 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
19367472 GAACTTAATT
19367482 ATAATT-CATATGATCC
1 ATAATTACATATG-TCC
19367498 ATAATTACATATGTCC
1 ATAATTACATATGTCC
19367514 A
1 A
19367515 ATCGGTCTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.39, C:0.18, G:0.06, T:0.36
Consensus pattern (16 bp):
ATAATTACATATGTCC
Found at i:19371189 original size:28 final size:27
Alignment explanation
Indices: 19371158--19371240 Score: 112
Period size: 27 Copynumber: 3.0 Consensus size: 27
19371148 ATTCAGATGA
* *
19371158 TTGCCACAAAGGCTAATCTTTTTATTTT
1 TTGCCACAAAGGCT-TTCTTTTTATTGT
* *
19371186 TTGCCACAAAGGCTTTCTTTTCATGGT
1 TTGCCACAAAGGCTTTCTTTTTATTGT
*
19371213 TTGCCACCAAGGCTTTCTTTTTATTGT
1 TTGCCACAAAGGCTTTCTTTTTATTGT
19371240 T
1 T
19371241 CACCCCAAAG
Statistics
Matches: 48, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 34 0.71
28 14 0.29
ACGTcount: A:0.19, C:0.20, G:0.14, T:0.46
Consensus pattern (27 bp):
TTGCCACAAAGGCTTTCTTTTTATTGT
Found at i:19373731 original size:25 final size:25
Alignment explanation
Indices: 19373703--19373766 Score: 83
Period size: 26 Copynumber: 2.5 Consensus size: 25
19373693 ACAAATTTTC
*
19373703 TCAAAATTTTACTGGGGTAAAATCG
1 TCAAAATTTTACCGGGGTAAAATCG
* * *
19373728 TCAAAATTTTTTCCGGGTTAAATTCG
1 TCAAAA-TTTTACCGGGGTAAAATCG
19373754 TCAAAATTTTACC
1 TCAAAATTTTACC
19373767 AGATTCAAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
25 12 0.36
26 21 0.64
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.38
Consensus pattern (25 bp):
TCAAAATTTTACCGGGGTAAAATCG
Found at i:19373776 original size:26 final size:26
Alignment explanation
Indices: 19373720--19373777 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
19373710 TTTACTGGGG
* * * *
19373720 TAAAATCGTCAAAATTTTTTCCGGGT
1 TAAATTCGTCAAAATTTTTACCAGAT
19373746 TAAATTCGTCAAAA-TTTTACCAGAT
1 TAAATTCGTCAAAATTTTTACCAGAT
19373771 TCAAATT
1 T-AAATT
19373778 GGGTGAGAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 9 0.33
26 18 0.67
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (26 bp):
TAAATTCGTCAAAATTTTTACCAGAT
Found at i:19381768 original size:20 final size:20
Alignment explanation
Indices: 19381743--19381780 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
19381733 TGGGTTGGTG
19381743 ATTTAACATATATAATTATT
1 ATTTAACATATATAATTATT
19381763 ATTTAACATATATAATTA
1 ATTTAACATATATAATTA
19381781 ATATAATTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (20 bp):
ATTTAACATATATAATTATT
Found at i:19385506 original size:23 final size:24
Alignment explanation
Indices: 19385475--19385519 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
19385465 ATATCCCCAT
*
19385475 ATGGAGTGTAG-GGTTGGATGGAG
1 ATGGAGTGTAGAGGCTGGATGGAG
*
19385498 ATGGTGTGTAGAGGCTGGATGG
1 ATGGAGTGTAGAGGCTGGATGG
19385520 GTAGGATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.20, C:0.02, G:0.51, T:0.27
Consensus pattern (24 bp):
ATGGAGTGTAGAGGCTGGATGGAG
Found at i:19387167 original size:21 final size:21
Alignment explanation
Indices: 19387143--19387183 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
19387133 GAATTAAATG
* *
19387143 AATATTCATTTGTAGAATTAT
1 AATATGCATTTGAAGAATTAT
*
19387164 AATATGCCTTTGAAGAATTA
1 AATATGCATTTGAAGAATTA
19387184 GGTGTAGATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.39, C:0.07, G:0.12, T:0.41
Consensus pattern (21 bp):
AATATGCATTTGAAGAATTAT
Found at i:19389195 original size:27 final size:27
Alignment explanation
Indices: 19389162--19389435 Score: 323
Period size: 27 Copynumber: 10.1 Consensus size: 27
19389152 ATCTAGACTA
* *
19389162 TAATGCCCCTGTAGGATAAAATGACCG
1 TAATACCCCTGTAGGGTAAAATGACCG
** * *
19389189 TGCTGCCCCTGTAGGGTAAAATGACCT
1 TAATACCCCTGTAGGGTAAAATGACCG
* * * **
19389216 TAATACCCCTGTAAGATAAAATAACTA
1 TAATACCCCTGTAGGGTAAAATGACCG
19389243 TAATACCCCTGTAGGGTAAAATGACCG
1 TAATACCCCTGTAGGGTAAAATGACCG
* * *
19389270 CAATACCCCTATAGGGTAAAATGATCG
1 TAATACCCCTGTAGGGTAAAATGACCG
* * **
19389297 CAATACCCCTATAGGGTAAAATGGTCG
1 TAATACCCCTGTAGGGTAAAATGACCG
**
19389324 TAATACCCCTGTAGGGTAAAATGGTCG
1 TAATACCCCTGTAGGGTAAAATGACCG
*
19389351 TAATGCCCCTGTAGGGTAAAATGACCG
1 TAATACCCCTGTAGGGTAAAATGACCG
* * *
19389378 TACTGCCCCTGTAGGGTAAAATAACCG
1 TAATACCCCTGTAGGGTAAAATGACCG
*
19389405 GAATACCCCTGTAGGGTAAAATGACCG
1 TAATACCCCTGTAGGGTAAAATGACCG
19389432 TAAT
1 TAAT
19389436 GCCCTGGTGG
Statistics
Matches: 214, Mismatches: 33, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 214 1.00
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.23
Consensus pattern (27 bp):
TAATACCCCTGTAGGGTAAAATGACCG
Found at i:19389531 original size:24 final size:23
Alignment explanation
Indices: 19389485--19389533 Score: 71
Period size: 24 Copynumber: 2.1 Consensus size: 23
19389475 AAATGATTGT
19389485 TTTGTCTGTGGTTAAATAACTGA
1 TTTGTCTGTGGTTAAATAACTGA
* *
19389508 TTTGTCTGTGATTTGAATAACTGA
1 TTTGTCTGTG-GTTAAATAACTGA
19389532 TT
1 TT
19389534 CTAAGCATGG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 10 0.43
24 13 0.57
ACGTcount: A:0.24, C:0.08, G:0.20, T:0.47
Consensus pattern (23 bp):
TTTGTCTGTGGTTAAATAACTGA
Found at i:19389751 original size:32 final size:31
Alignment explanation
Indices: 19389705--19389925 Score: 194
Period size: 32 Copynumber: 6.9 Consensus size: 31
19389695 GCTGAGATGC
*
19389705 TACTGATGGTTTTGTGCCGATCATAGTACCGT
1 TACTGATGG-TTTGTGCCGATCATATTACCGT
* *
19389737 TACTGATGGCTTTGTACTGATCATATTACCGT
1 TACTGATGG-TTTGTGCCGATCATATTACCGT
*
19389769 TA-TCGATGGTTGTGTGCCGATCAT-TTCACTGT
1 TACT-GATGGTT-TGTGCCGATCATATT-ACCGT
* * * *
19389801 TACTGATGGTTGTGTGCCAATCATATCACTGC
1 TACTGATGGTT-TGTGCCGATCATATTACCGT
* * *
19389833 TACTAATGGCTTTGTGTCGATCATGTTACCGT
1 TACTGATGG-TTTGTGCCGATCATATTACCGT
***
19389865 TACTGATGGTTGTGTGCCGATCATATTACTAC
1 TACTGATGGTT-TGTGCCGATCATATTACCGT
* * *
19389897 TACTGATAGCTTTGTGCCAATCACATTAC
1 TACTGAT-GGTTTGTGCCGATCATATTAC
19389926 TGTACTTATG
Statistics
Matches: 155, Mismatches: 26, Indels: 16
0.79 0.13 0.08
Matches are distributed among these distances:
31 7 0.05
32 141 0.91
33 7 0.05
ACGTcount: A:0.21, C:0.20, G:0.21, T:0.38
Consensus pattern (31 bp):
TACTGATGGTTTGTGCCGATCATATTACCGT
Found at i:19389824 original size:64 final size:63
Alignment explanation
Indices: 19389703--19389925 Score: 218
Period size: 64 Copynumber: 3.5 Consensus size: 63
19389693 TTGCTGAGAT
* * *
19389703 GCTACTGATGGTTTTGTGCCGATCATAGTACCGTTACTGATGGCTT-TGTACTGATCATATTACC
1 GCTACTGATGG-TTTGTGCCGATCATATTACCGTTACTGATGG-TTGTGTGCCGATCATATTACC
* * * *
19389767 GTTA-TCGATGGTTGTGTGCCGATCAT-TTCACTGTTACTGATGGTTGTGTGCCAATCATATCAC
1 GCTACT-GATGGTT-TGTGCCGATCATATT-ACCGTTACTGATGGTTGTGTGCCGATCATATTAC
*
19389830 T
63 C
* * * *
19389831 GCTACTAATGGCTTTGTGTCGATCATGTTACCGTTACTGATGGTTGTGTGCCGATCATATTACT
1 GCTACTGATGG-TTTGTGCCGATCATATTACCGTTACTGATGGTTGTGTGCCGATCATATTACC
* * * *
19389895 ACTACTGATAGCTTTGTGCCAATCACATTAC
1 GCTACTGAT-GGTTTGTGCCGATCATATTAC
19389926 TGTACTTATG
Statistics
Matches: 130, Mismatches: 21, Indels: 16
0.78 0.13 0.10
Matches are distributed among these distances:
63 6 0.05
64 118 0.91
65 6 0.05
ACGTcount: A:0.21, C:0.20, G:0.22, T:0.38
Consensus pattern (63 bp):
GCTACTGATGGTTTGTGCCGATCATATTACCGTTACTGATGGTTGTGTGCCGATCATATTACC
Found at i:19389873 original size:96 final size:93
Alignment explanation
Indices: 19389704--19389939 Score: 262
Period size: 96 Copynumber: 2.5 Consensus size: 93
19389694 TGCTGAGATG
* * *
19389704 CTACTGATGGTTTTGTGCCGATCATAGTACCGTTACTGATGGCTTTGTACTGATCATATTACCGT
1 CTACTGATGG-TTTGTGCCAATCATA-TACTG-TACTAATGGCTTTGTACTGATCATATTACCGT
*
19389769 TATCGATGGTTGTGTGCCGATCAT-TTCACTG
63 TATCGATGGTTGTGTGCCGATCATATT-ACTA
* * *
19389800 TTACTGATGGTTGTGTGCCAATCATATCACTGCTACTAATGGCTTTGT-GTCGATCATGTTACCG
1 CTACTGATGGTT-TGTGCCAATCATAT-ACTG-TACTAATGGCTTTGTACT-GATCATATTACCG
19389864 TTA-CTGATGGTTGTGTGCCGATCATATTACTA
62 TTATC-GATGGTTGTGTGCCGATCATATTACTA
* * *
19389896 CTACTGATAGCTTTGTGCCAATCACATTACTGTACTTATGGCTT
1 CTACTGAT-GGTTTGTGCCAATCATA-TACTGTACTAATGGCTT
19389940 GTAGCTATTC
Statistics
Matches: 121, Mismatches: 12, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
95 16 0.13
96 99 0.82
97 6 0.05
ACGTcount: A:0.20, C:0.20, G:0.21, T:0.39
Consensus pattern (93 bp):
CTACTGATGGTTTGTGCCAATCATATACTGTACTAATGGCTTTGTACTGATCATATTACCGTTAT
CGATGGTTGTGTGCCGATCATATTACTA
Found at i:19389956 original size:22 final size:22
Alignment explanation
Indices: 19389931--19389982 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
19389921 ATTACTGTAC
* * *
19389931 TTATGGCTTGTAGCTATTCTGT
1 TTATAGCTTATAGCTATCCTGT
*
19389953 TTATAGCTTATAGTTATCCTGT
1 TTATAGCTTATAGCTATCCTGT
*
19389975 TTACAGCT
1 TTATAGCT
19389983 CTTAGCCATT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.19, C:0.15, G:0.17, T:0.48
Consensus pattern (22 bp):
TTATAGCTTATAGCTATCCTGT
Found at i:19390018 original size:26 final size:26
Alignment explanation
Indices: 19389989--19390041 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19389979 AGCTCTTAGC
* *
19389989 CATTCTGACTACTGGCAGCTCTGCTG
1 CATTATGACTACTGGCAGCTATGCTG
*
19390015 CATTATTACTACTGGCAGCTATGCTG
1 CATTATGACTACTGGCAGCTATGCTG
19390041 C
1 C
19390042 GATATTGGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.19, C:0.28, G:0.21, T:0.32
Consensus pattern (26 bp):
CATTATGACTACTGGCAGCTATGCTG
Found at i:19390190 original size:28 final size:28
Alignment explanation
Indices: 19390157--19390210 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
19390147 CATACTGATA
*
19390157 ATGTATCGGGCTTAGGCCCACACTGTTT
1 ATGTATCGGGCTAAGGCCCACACTGTTT
*
19390185 ATGTATTGGGCTAAGGCCCACACTGT
1 ATGTATCGGGCTAAGGCCCACACTGT
19390211 ACTGTTACTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.20, C:0.24, G:0.26, T:0.30
Consensus pattern (28 bp):
ATGTATCGGGCTAAGGCCCACACTGTTT
Found at i:19394239 original size:15 final size:15
Alignment explanation
Indices: 19394215--19394244 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
19394205 TATTCCATTG
*
19394215 TTTTTCCTTAATTTT
1 TTTTTACTTAATTTT
19394230 TTTTTACTTAATTTT
1 TTTTTACTTAATTTT
19394245 GTCTCCCACG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.10, G:0.00, T:0.73
Consensus pattern (15 bp):
TTTTTACTTAATTTT
Found at i:19399941 original size:187 final size:188
Alignment explanation
Indices: 19399624--19399998 Score: 599
Period size: 187 Copynumber: 2.0 Consensus size: 188
19399614 AATGATAGTA
* * * *
19399624 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGAT
1 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATAGCCGAC
*
19399689 GTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
65 GTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
* * * *
19399754 TATATGTGTGATAGGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGAT
130 TATATATGTGATAAGGCCTAACAGCCGACGTGATGAATGTGAAAGTGTATATATGTGAT
*
19399813 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTG-TATATGTGTGATAAGGCCTAATAGCCGACG
1 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATAGCCGACG
* **
19399877 TGATGAATGTGAAAGTGTATGTGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGT
66 TGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGT
* *
19399942 ATATATGTGATAAGGCCTAACGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
131 ATATATGTGATAAGGCCTAACAGCCGACGTGATGAATGTGAAAGTGTATATATGTGA
19399999 CAAGGCCGAG
Statistics
Matches: 171, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
187 138 0.81
189 33 0.19
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.29
Consensus pattern (188 bp):
AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATAGCCGACG
TGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGT
ATATATGTGATAAGGCCTAACAGCCGACGTGATGAATGTGAAAGTGTATATATGTGAT
Found at i:19400034 original size:47 final size:47
Alignment explanation
Indices: 19399622--19400005 Score: 599
Period size: 47 Copynumber: 8.1 Consensus size: 47
19399612 GAAATGATAG
*
19399622 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* * *
19399671 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
19399718 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
19399765 TAGGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
19399812 T-AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
19399858 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATGTGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
19399905 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
**
19399952 TAAGGCCTAACGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
19399999 CAAGGCC
1 TAAGGCC
19400006 GAGTGGCCAA
Statistics
Matches: 316, Mismatches: 18, Indels: 4
0.93 0.05 0.01
Matches are distributed among these distances:
46 44 0.14
47 237 0.75
49 35 0.11
ACGTcount: A:0.31, C:0.10, G:0.30, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:19400224 original size:37 final size:37
Alignment explanation
Indices: 19400168--19400246 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
19400158 CCGAGCTCTA
* * *
19400168 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
19400205 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
19400242 AAGAC
1 AAGAC
19400247 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:19407319 original size:50 final size:49
Alignment explanation
Indices: 19407195--19407387 Score: 221
Period size: 50 Copynumber: 3.9 Consensus size: 49
19407185 GATAATAACA
* * ** * *
19407195 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTTCATGTAC-
1 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATCT-CG
* * * * *
19407244 TGCCAATGCCATATCCCAGATATGGTTTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATCTC-G
19407294 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATCTCAG
1 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATCTC-G
* *
19407344 TGTCAACGCCATGTTCCAAACATGGTCTTACATGGGA--TCTCATC
1 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATC
19407388 CTCTTAATGT
Statistics
Matches: 126, Mismatches: 16, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
48 8 0.06
49 39 0.31
50 79 0.63
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (49 bp):
TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATCTCG
Found at i:19410042 original size:882 final size:882
Alignment explanation
Indices: 19408340--19410107 Score: 3491
Period size: 882 Copynumber: 2.0 Consensus size: 882
19408330 AATTACTATT
*
19408340 TAAGGACCTCTACTTTGATTATGCACTTCAAATAAATCCTTTATCATCTAAAACTCATATTTACC
1 TAAGGACCTCTACTTTGACTATGCACTTCAAATAAATCCTTTATCATCTAAAACTCATATTTACC
19408405 TACTTTTGCAATTAAGTCCTAATAGGCAATTTAGGCATGCAATCAATAAAATTTCTTATCAATAC
66 TACTTTTGCAATTAAGTCCTAATAGGCAATTTAGGCATGCAATCAATAAAATTTCTTATCAATAC
19408470 TCTAATACTTATATCTAATCACTCGATAAATCATAAAAATTAATAATAATTTTCTCTTTAAATCG
131 TCTAATACTTATATCTAATCACTCGATAAATCATAAAAATTAATAATAATTTTCTCTTTAAATCG
19408535 GATTTGTGGTTACGAAACCACTATTTCGATGACCTTGAATTTGGGTCATTACTAACATGGCTATG
196 GATTTGTGGTTACGAAACCACTATTTCGATGACCTTGAATTTGGGTCATTACTAACATGGCTATG
19408600 ATACCACTAAATGTAACACCCCAAATCCAGCCTAGACGTTATGGTCGAATCTAGGAGTGTTACAA
261 ATACCACTAAATGTAACACCCCAAATCCAGCCTAGACGTTATGGTCGAATCTAGGAGTGTTACAA
19408665 TGAAAGATTTTAAAACACATCTTTTATGTTAAAACGAATCGCGTTATTTAAAACAAAACAAAGTT
326 TGAAAGATTTTAAAACACATCTTTTATGTTAAAACGAATCGCGTTATTTAAAACAAAACAAAGTT
19408730 AATATTTTTGGAAAAAACTTATTTTTATTATCTTACTAAAATCGTTATAAGTTTTCCTTTATAGT
391 AATATTTTTGGAAAAAACTTATTTTTATTATCTTACTAAAATCGTTATAAGTTTTCCTTTATAGT
19408795 TACAAAAAAAATTTGAAGCGGAAGTTTGAAAATTGTTTAAATTGAAACAACGCTCGTATTATAAA
456 TACAAAAAAAATTTGAAGCGGAAGTTTGAAAATTGTTTAAATTGAAACAACGCTCGTATTATAAA
19408860 AGTATTTGTTCGCGTAAAACTGGAATTTTTGTCAATCACATGGTTTAAAAATCATAAACTCAACC
521 AGTATTTGTTCGCGTAAAACTGGAATTTTTGTCAATCACATGGTTTAAAAATCATAAACTCAACC
19408925 AAACCAAATATCCAAAATGAACAGTCCCAAAAAGTCCGGGGAGTCCAAATATTACAAAACTCTCA
586 AAACCAAATATCCAAAATGAACAGTCCCAAAAAGTCCGGGGAGTCCAAATATTACAAAACTCTCA
19408990 CGAAACTTGAAAATTAAGTAAAATCGGTAAATAAAGATAAGAAAAACAACAGTTTTTTGATAAGT
651 CGAAACTTGAAAATTAAGTAAAATCGGTAAATAAAGATAAGAAAAACAACAGTTTTTTGATAAGT
19409055 GGTCACCGCTGAGCCTCCGTCGCACCAACCCGCCTATGTCTGAGGATTACCTGTACAGAATAGAC
716 GGTCACCGCTGAGCCTCCGTCGCACCAACCCGCCTATGTCTGAGGATTACCTGTACAGAATAGAC
19409120 TAATAGATGTGAGTTTTCGTAAACTCAGTGTGTAACCCAACAGAGATAGACATACAAATGTACAC
781 TAATAGATGTGAGTTTTCGTAAACTCAGTGTGTAACCCAACAGAGATAGACATACAAATGTACAC
19409185 AGTATTATCATATGCAGAACAGATACAAATACGGACC
846 AGTATTATCATATGCAGAACAGATACAAATACGGACC
19409222 TAAGGACCTCTACTTTGACTATGCACTTCAAATAAATCCTTTATCATCTAAAACTCATATTTACC
1 TAAGGACCTCTACTTTGACTATGCACTTCAAATAAATCCTTTATCATCTAAAACTCATATTTACC
19409287 TACTTTTGCAATTAAGTCCTAATAGGCAATTTAGGCATGCAATCAATAAAATTTCTTATCAATAC
66 TACTTTTGCAATTAAGTCCTAATAGGCAATTTAGGCATGCAATCAATAAAATTTCTTATCAATAC
19409352 TCTAATACTTATATCTAATCACTCGATAAATCATAAAAATTAATAATAATTTTCTCTTTAAATCG
131 TCTAATACTTATATCTAATCACTCGATAAATCATAAAAATTAATAATAATTTTCTCTTTAAATCG
19409417 GATTTGTGGTTACGAAACCACTATTTCGATGACCTTGAATTTGGGTCATTACTAACATGGCTATG
196 GATTTGTGGTTACGAAACCACTATTTCGATGACCTTGAATTTGGGTCATTACTAACATGGCTATG
19409482 ATACCACTAAATGTAACACCCCAAATCCAGCCTAGACGTTATGGTCGAATCTAGGAGTGTTACAA
261 ATACCACTAAATGTAACACCCCAAATCCAGCCTAGACGTTATGGTCGAATCTAGGAGTGTTACAA
* *
19409547 TGAAGGATTTTAAAACACATCTTTTATGTTAAAACGAATCGTGTTATTTAAAACAAAACAAAGTT
326 TGAAAGATTTTAAAACACATCTTTTATGTTAAAACGAATCGCGTTATTTAAAACAAAACAAAGTT
19409612 AATATTTTTGGAAAAAACTTATTTTTATTATCTTACTAAAATCGTTATAAGTTTTCCTTTATAGT
391 AATATTTTTGGAAAAAACTTATTTTTATTATCTTACTAAAATCGTTATAAGTTTTCCTTTATAGT
19409677 TACAAAAAAAATTTGAAGCGGAAGTTTGAAAATTGTTTAAATTGAAACAACGCTCGTATTATAAA
456 TACAAAAAAAATTTGAAGCGGAAGTTTGAAAATTGTTTAAATTGAAACAACGCTCGTATTATAAA
19409742 AGTATTTGTTCGCGTAAAACTGGAATTTTTGTCAATCACATGGTTTAAAAATCATAAACTCAACC
521 AGTATTTGTTCGCGTAAAACTGGAATTTTTGTCAATCACATGGTTTAAAAATCATAAACTCAACC
19409807 AAACCAAATATCCAAAATGAACAGTCCCAAAAAGTCCGGGGAGTCCAAATATTACAAAACTCTCA
586 AAACCAAATATCCAAAATGAACAGTCCCAAAAAGTCCGGGGAGTCCAAATATTACAAAACTCTCA
*
19409872 CGAAACTTGAAAATTAAGTAAAATCGGTAAATAAAGATAAGAAAAACAATAGTTTTTTGATAAGT
651 CGAAACTTGAAAATTAAGTAAAATCGGTAAATAAAGATAAGAAAAACAACAGTTTTTTGATAAGT
*
19409937 GGTCACCGCTGAGCCTCCGTCGCACCGACCCGCCTATGTCTGAGGATTACCTGTACAGAATAGAC
716 GGTCACCGCTGAGCCTCCGTCGCACCAACCCGCCTATGTCTGAGGATTACCTGTACAGAATAGAC
19410002 TAATAGATGTGAGTTTTCGTAAACTCAGTGTGTAACCCAACAGAGATAGACATACAAATGTACAC
781 TAATAGATGTGAGTTTTCGTAAACTCAGTGTGTAACCCAACAGAGATAGACATACAAATGTACAC
19410067 AGTATTATCATATGCAGAACAGATACAAATACGGACC
846 AGTATTATCATATGCAGAACAGATACAAATACGGACC
19410104 TAAG
1 TAAG
19410108 TCCTTACCAG
Statistics
Matches: 881, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
882 881 1.00
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.31
Consensus pattern (882 bp):
TAAGGACCTCTACTTTGACTATGCACTTCAAATAAATCCTTTATCATCTAAAACTCATATTTACC
TACTTTTGCAATTAAGTCCTAATAGGCAATTTAGGCATGCAATCAATAAAATTTCTTATCAATAC
TCTAATACTTATATCTAATCACTCGATAAATCATAAAAATTAATAATAATTTTCTCTTTAAATCG
GATTTGTGGTTACGAAACCACTATTTCGATGACCTTGAATTTGGGTCATTACTAACATGGCTATG
ATACCACTAAATGTAACACCCCAAATCCAGCCTAGACGTTATGGTCGAATCTAGGAGTGTTACAA
TGAAAGATTTTAAAACACATCTTTTATGTTAAAACGAATCGCGTTATTTAAAACAAAACAAAGTT
AATATTTTTGGAAAAAACTTATTTTTATTATCTTACTAAAATCGTTATAAGTTTTCCTTTATAGT
TACAAAAAAAATTTGAAGCGGAAGTTTGAAAATTGTTTAAATTGAAACAACGCTCGTATTATAAA
AGTATTTGTTCGCGTAAAACTGGAATTTTTGTCAATCACATGGTTTAAAAATCATAAACTCAACC
AAACCAAATATCCAAAATGAACAGTCCCAAAAAGTCCGGGGAGTCCAAATATTACAAAACTCTCA
CGAAACTTGAAAATTAAGTAAAATCGGTAAATAAAGATAAGAAAAACAACAGTTTTTTGATAAGT
GGTCACCGCTGAGCCTCCGTCGCACCAACCCGCCTATGTCTGAGGATTACCTGTACAGAATAGAC
TAATAGATGTGAGTTTTCGTAAACTCAGTGTGTAACCCAACAGAGATAGACATACAAATGTACAC
AGTATTATCATATGCAGAACAGATACAAATACGGACC
Found at i:19413308 original size:21 final size:21
Alignment explanation
Indices: 19413277--19413338 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 21
19413267 GAAAAGGCTA
*
19413277 CAGAATTCTACTGGTAGAACT
1 CAGACTTCTACTGGTAGAACT
* * * *
19413298 GAGAGTTCTACTTGTACAACT
1 CAGACTTCTACTGGTAGAACT
19413319 CAGACTTCTA-TCGGTAGAAC
1 CAGACTTCTACT-GGTAGAAC
19413339 GCACTCTAGT
Statistics
Matches: 32, Mismatches: 8, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
20 1 0.03
21 31 0.97
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (21 bp):
CAGACTTCTACTGGTAGAACT
Found at i:19421399 original size:11 final size:11
Alignment explanation
Indices: 19421385--19421425 Score: 73
Period size: 11 Copynumber: 3.6 Consensus size: 11
19421375 TTTATTTTTT
19421385 TATTTTTAAAA
1 TATTTTTAAAA
19421396 TATTTTTAAAA
1 TATTTTTAAAA
19421407 TATTTTTAAAA
1 TATTTTTAAAA
19421418 TACTTTTT
1 TA-TTTTT
19421426 TTATTTTAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
11 24 0.83
12 5 0.17
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (11 bp):
TATTTTTAAAA
Found at i:19421445 original size:20 final size:20
Alignment explanation
Indices: 19421407--19421446 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
19421397 ATTTTTAAAA
* **
19421407 TATTTTTAAAATACTTTTTT
1 TATTTTAAAAATAAATTTTT
19421427 TATTTTAAAAATAAATTTTT
1 TATTTTAAAAATAAATTTTT
19421447 AGTGTTTATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.60
Consensus pattern (20 bp):
TATTTTAAAAATAAATTTTT
Found at i:19424939 original size:13 final size:13
Alignment explanation
Indices: 19424921--19424950 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
19424911 ACTCACTACT
19424921 AACAACCCAACCA
1 AACAACCCAACCA
19424934 AACAACCCAACCA
1 AACAACCCAACCA
19424947 AACA
1 AACA
19424951 TAAGTTAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.57, C:0.43, G:0.00, T:0.00
Consensus pattern (13 bp):
AACAACCCAACCA
Found at i:19426036 original size:22 final size:21
Alignment explanation
Indices: 19426011--19426054 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
19426001 AGGACATGAT
19426011 TTTAAAAAAAATTAAAAATTTA
1 TTTAAAAAAAATT-AAAATTTA
* *
19426033 TTTAGAAAATATTAAAATTTA
1 TTTAAAAAAAATTAAAATTTA
19426054 T
1 T
19426055 AAGAATTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (21 bp):
TTTAAAAAAAATTAAAATTTA
Found at i:19426428 original size:11 final size:10
Alignment explanation
Indices: 19426405--19426456 Score: 54
Period size: 10 Copynumber: 5.1 Consensus size: 10
19426395 ATAATTGCTT
19426405 ATAATTTTTA
1 ATAATTTTTA
19426415 ATAATTTTTAA
1 ATAATTTTT-A
19426426 ATAATTTCTT-
1 ATAATTT-TTA
*
19426436 ATCATTTTT-
1 ATAATTTTTA
19426445 ATAATTATTTA
1 ATAATT-TTTA
19426456 A
1 A
19426457 GAAACCACTC
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
9 7 0.19
10 18 0.50
11 9 0.25
12 2 0.06
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (10 bp):
ATAATTTTTA
Found at i:19426431 original size:21 final size:22
Alignment explanation
Indices: 19426405--19426454 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 22
19426395 ATAATTGCTT
19426405 ATAATTT-TTAATAATTTTTA-A
1 ATAATTTCTT-ATAATTTTTATA
*
19426426 ATAATTTCTTATCATTTTTATA
1 ATAATTTCTTATAATTTTTATA
*
19426448 ATTATTT
1 ATAATTT
19426455 AAGAAACCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 16 0.64
22 9 0.36
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (22 bp):
ATAATTTCTTATAATTTTTATA
Found at i:19426437 original size:31 final size:31
Alignment explanation
Indices: 19426394--19426456 Score: 92
Period size: 31 Copynumber: 2.0 Consensus size: 31
19426384 TTTTAAAAAT
19426394 AATAATTGCTTATAATTTTTAATAATT-TTTA
1 AATAATTGCTTATAATTTTT-ATAATTATTTA
* *
19426425 AATAATTTCTTATCATTTTTATAATTATTTA
1 AATAATTGCTTATAATTTTTATAATTATTTA
19426456 A
1 A
19426457 GAAACCACTC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 6 0.21
31 23 0.79
ACGTcount: A:0.38, C:0.05, G:0.02, T:0.56
Consensus pattern (31 bp):
AATAATTGCTTATAATTTTTATAATTATTTA
Found at i:19426450 original size:19 final size:19
Alignment explanation
Indices: 19426393--19426456 Score: 58
Period size: 21 Copynumber: 3.2 Consensus size: 19
19426383 TTTTTAAAAA
*
19426393 TAATAATTGCTTATAATTTT
1 TAATAATT-TTTATAATTTT
19426413 TAATAATTTTTAAATAATTTCT
1 TAATAATTTTT--ATAATTT-T
*
19426435 T-ATCATTTTTATAATTATT
1 TAATAATTTTTATAATT-TT
19426454 TAA
1 TAA
19426457 GAAACCACTC
Statistics
Matches: 37, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
19 10 0.27
20 10 0.27
21 15 0.41
22 2 0.05
ACGTcount: A:0.38, C:0.05, G:0.02, T:0.56
Consensus pattern (19 bp):
TAATAATTTTTATAATTTT
Found at i:19428379 original size:21 final size:22
Alignment explanation
Indices: 19428340--19428380 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
19428330 GCAAATCTGG
19428340 GATTAAAATTAACTTTTTAAGA
1 GATTAAAATTAACTTTTTAAGA
19428362 GATTAAAATTAA-TTTTTAA
1 GATTAAAATTAACTTTTTAA
19428381 TAAAAATAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.46, C:0.02, G:0.07, T:0.44
Consensus pattern (22 bp):
GATTAAAATTAACTTTTTAAGA
Found at i:19428506 original size:31 final size:31
Alignment explanation
Indices: 19428468--19428531 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
19428458 TAGTGAAGAA
19428468 GTGAACTAGGAGAGTATTTTCTTTGGTCAAT
1 GTGAACTAGGAGAGTATTTTCTTTGGTCAAT
19428499 GTGAACTAGGAGAGTATTTTCTTTGGTCAAT
1 GTGAACTAGGAGAGTATTTTCTTTGGTCAAT
19428530 GT
1 GT
19428532 AAGATTAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.25, C:0.09, G:0.27, T:0.39
Consensus pattern (31 bp):
GTGAACTAGGAGAGTATTTTCTTTGGTCAAT
Found at i:19428659 original size:88 final size:86
Alignment explanation
Indices: 19428548--19428712 Score: 233
Period size: 88 Copynumber: 1.9 Consensus size: 86
19428538 AAAATTAAAA
* * * * *
19428548 TTTTTAATGAAATAGTGAAGAAATTGTCACTTATTTATAAGGTTAGTGTGAG-ATATGATAGTGT
1 TTTTTAATGAAATAGTGAAGAAATTGACACTTATTTATAAAGTAACTGTGAGCATGTG--AGTGT
*
19428612 TCTCTAGTCAATGTGGGATTAAC
64 TCTCTAGCCAATGTGGGATTAAC
*
19428635 TTTTTAATGAAAATAGTGAAGAAATTGACACTTCTTTATAAAGTAACTGTGAGCATGTGAGTGTT
1 TTTTTAATG-AAATAGTGAAGAAATTGACACTTATTTATAAAGTAACTGTGAGCATGTGAGTGTT
19428700 CTCTAGCCAATGT
65 CTCTAGCCAATGT
19428713 AAGATTAAAA
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
87 27 0.39
88 38 0.55
89 4 0.06
ACGTcount: A:0.33, C:0.09, G:0.21, T:0.38
Consensus pattern (86 bp):
TTTTTAATGAAATAGTGAAGAAATTGACACTTATTTATAAAGTAACTGTGAGCATGTGAGTGTTC
TCTAGCCAATGTGGGATTAAC
Found at i:19428741 original size:19 final size:20
Alignment explanation
Indices: 19428712--19428767 Score: 78
Period size: 19 Copynumber: 2.8 Consensus size: 20
19428702 CTAGCCAATG
19428712 TAAGATTAAAATTAACCTTT
1 TAAGATTAAAATTAACCTTT
*
19428732 TAAG-TTAAAATTAACTTTT
1 TAAGATTAAAATTAACCTTT
19428751 TAAAGGATTAAAATTAA
1 T-AA-GATTAAAATTAA
19428768 TTTTTAATAA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
19 15 0.47
20 6 0.19
21 1 0.03
22 10 0.31
ACGTcount: A:0.48, C:0.05, G:0.07, T:0.39
Consensus pattern (20 bp):
TAAGATTAAAATTAACCTTT
Found at i:19435354 original size:43 final size:42
Alignment explanation
Indices: 19435294--19435450 Score: 187
Period size: 43 Copynumber: 3.7 Consensus size: 42
19435284 TATGTATTTT
19435294 CGTGTAAGACCACGTCTGGGACGTTGGCATCGAATTGTGTATA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGAATTGTG-ATA
* * * *
19435337 CGTGTAAGACCATGTCTGGGACATTGGCATCGTATT-TGATT
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGAATTGTGATA
*
19435378 TGTGTAAGACC-CTGTCTGGGACAG-TGGCATC-AATATGTGATTA
1 CGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGAAT-TGTGA-TA
*
19435421 CATGTAAGACCACGTCTGGGACGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACGTTGGCAT
19435451 TGTACGAGCC
Statistics
Matches: 96, Mismatches: 11, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
40 2 0.02
41 29 0.30
42 6 0.06
43 58 0.60
44 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (42 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATCGAATTGTGATA
Found at i:19435396 original size:84 final size:84
Alignment explanation
Indices: 19435295--19435450 Score: 221
Period size: 84 Copynumber: 1.9 Consensus size: 84
19435285 ATGTATTTTC
* *
19435295 GTGTAAGACCACGTCTGGGAC-GTTGGCATCGAAT-TGTG-TATACGTGTAAGACCATGTCTGGG
1 GTGTAAGACCACGTCTGGGACAG-TGGCATC-AATATGTGAT-TACATGTAAGACCACGTCTGGG
19435357 ACATTGGCATCGTATTTGATTT
63 ACATTGGCATCGTATTTGATTT
19435379 GTGTAAGACC-CTGTCTGGGACAGTGGCATCAATATGTGATTACATGTAAGACCACGTCTGGGAC
1 GTGTAAGACCAC-GTCTGGGACAGTGGCATCAATATGTGATTACATGTAAGACCACGTCTGGGAC
*
19435443 GTTGGCAT
65 ATTGGCAT
19435451 TGTACGAGCC
Statistics
Matches: 65, Mismatches: 3, Indels: 8
0.86 0.04 0.11
Matches are distributed among these distances:
83 4 0.06
84 59 0.91
85 2 0.03
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (84 bp):
GTGTAAGACCACGTCTGGGACAGTGGCATCAATATGTGATTACATGTAAGACCACGTCTGGGACA
TTGGCATCGTATTTGATTT
Found at i:19438747 original size:67 final size:68
Alignment explanation
Indices: 19438668--19438844 Score: 198
Period size: 67 Copynumber: 2.6 Consensus size: 68
19438658 TTCTCTAGCT
* * *
19438668 AATGTGGGATTAAAAATAA-TTTTTAATGAAATAGTGAAGAAGTGAACTATGAGAGTATTCTCAA
1 AATGTGAGATTAAAATTAACTTTTTAATGAAATAGTGAAGAAGTGAACTATGAGAGTATTATCAA
19438732 GTC
66 GTC
* * * * *
19438735 AATGTGAGATTAAAATTAACTTTTCAATGAAAATAGCG-A-AAGTTAGCTATGAGAGTATTATCT
1 AATGTGAGATTAAAATTAACTTTTTAATG-AAATAGTGAAGAAGTGAACTATGAGAGTATTATCA
19438798 AGTC
65 AGTC
** * * *
19438802 GGTGTGTGACTAAAATTAACTTTTTAATAAAAATAGTGAAGAA
1 AATGTGAGATTAAAATTAACTTTTTAAT-GAAATAGTGAAGAA
19438845 ATTGTTACTT
Statistics
Matches: 90, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
67 71 0.79
68 10 0.11
69 9 0.10
ACGTcount: A:0.42, C:0.07, G:0.19, T:0.32
Consensus pattern (68 bp):
AATGTGAGATTAAAATTAACTTTTTAATGAAATAGTGAAGAAGTGAACTATGAGAGTATTATCAA
GTC
Found at i:19440801 original size:11 final size:11
Alignment explanation
Indices: 19440785--19440812 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
19440775 TATATAATAA
19440785 ATTATTATTTT
1 ATTATTATTTT
19440796 ATTATTATTTT
1 ATTATTATTTT
19440807 ATTATT
1 ATTATT
19440813 TTATTAAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (11 bp):
ATTATTATTTT
Found at i:19454236 original size:22 final size:22
Alignment explanation
Indices: 19454193--19454253 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 22
19454183 TTTAAAAAAT
19454193 AAATATAGAAATAAATATATAA
1 AAATATAGAAATAAATATATAA
* *
19454215 AAATTTAG-AATATATATAATAATA
1 AAATATAGAAATAAATAT-AT-A-A
*
19454239 AAATATAAAAATAAA
1 AAATATAGAAATAAA
19454254 AATTTATTAA
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
21 8 0.27
22 9 0.30
23 1 0.03
24 7 0.23
25 5 0.17
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (22 bp):
AAATATAGAAATAAATATATAA
Found at i:19454246 original size:13 final size:13
Alignment explanation
Indices: 19454187--19454254 Score: 57
Period size: 14 Copynumber: 4.8 Consensus size: 13
19454177 TATCAATTTA
19454187 AAAAAT-AAATAT
1 AAAAATAAAATAT
*
19454199 AGAAATAAATATAT
1 AAAAATAAA-ATAT
19454213 AAAAATTTAGAATATAT
1 AAAAA--TA-AA-ATAT
19454230 ATAATAATAAAATAT
1 A-AA-AATAAAATAT
19454245 AAAAATAAAA
1 AAAAATAAAA
19454255 ATTTATTAAT
Statistics
Matches: 47, Mismatches: 2, Indels: 13
0.76 0.03 0.21
Matches are distributed among these distances:
12 5 0.11
13 9 0.19
14 10 0.21
15 5 0.11
16 4 0.09
17 10 0.21
18 2 0.04
19 2 0.04
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (13 bp):
AAAAATAAAATAT
Found at i:19454894 original size:22 final size:22
Alignment explanation
Indices: 19454866--19454909 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
19454856 ATTTTCTAAC
19454866 AGATTTAATGAATAAATTCAAG
1 AGATTTAATGAATAAATTCAAG
19454888 AGATTTAATGAATAAATTCAAG
1 AGATTTAATGAATAAATTCAAG
19454910 GTTTCAATCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.50, C:0.05, G:0.14, T:0.32
Consensus pattern (22 bp):
AGATTTAATGAATAAATTCAAG
Found at i:19455371 original size:29 final size:29
Alignment explanation
Indices: 19455317--19455374 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
19455307 AAGTTTCAAA
**
19455317 CCAAAACCCAAACTAAAGGAAGAAAATTT
1 CCAAAACCCAAACTAAACCAAGAAAATTT
*
19455346 CCAAATCCCAAACTAAAACCAA-AAAATTT
1 CCAAAACCCAAACT-AAACCAAGAAAATTT
19455375 TCCAGATTCC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 20 0.80
30 5 0.20
ACGTcount: A:0.55, C:0.24, G:0.05, T:0.16
Consensus pattern (29 bp):
CCAAAACCCAAACTAAACCAAGAAAATTT
Found at i:19468290 original size:20 final size:20
Alignment explanation
Indices: 19468249--19468290 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
19468239 CTATAGTTTA
*
19468249 AAAAATATTAAAAAATCTAT
1 AAAAATATTAAAAAAACTAT
19468269 AAAAATAATTAAAAAAAC-AT
1 AAAAAT-ATTAAAAAAACTAT
19468289 AA
1 AA
19468291 TTCTTAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.71, C:0.05, G:0.00, T:0.24
Consensus pattern (20 bp):
AAAAATATTAAAAAAACTAT
Found at i:19470241 original size:8 final size:8
Alignment explanation
Indices: 19470228--19470260 Score: 66
Period size: 8 Copynumber: 4.1 Consensus size: 8
19470218 AAATAGCGGA
19470228 AGAAATTG
1 AGAAATTG
19470236 AGAAATTG
1 AGAAATTG
19470244 AGAAATTG
1 AGAAATTG
19470252 AGAAATTG
1 AGAAATTG
19470260 A
1 A
19470261 ACACAAAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.24, T:0.24
Consensus pattern (8 bp):
AGAAATTG
Found at i:19472880 original size:30 final size:31
Alignment explanation
Indices: 19472841--19472905 Score: 87
Period size: 30 Copynumber: 2.1 Consensus size: 31
19472831 GTAATTATAC
* *
19472841 ACATTAAACTTTTATTTTG-TTCAAATGTAT
1 ACATAAAACTTTAATTTTGATTCAAATGTAT
**
19472871 ACATAAAACTTTAATTTTGATTCAGTTGTAT
1 ACATAAAACTTTAATTTTGATTCAAATGTAT
19472902 ACAT
1 ACAT
19472906 TTAAATAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
30 17 0.57
31 13 0.43
ACGTcount: A:0.35, C:0.11, G:0.08, T:0.46
Consensus pattern (31 bp):
ACATAAAACTTTAATTTTGATTCAAATGTAT
Found at i:19473248 original size:25 final size:26
Alignment explanation
Indices: 19473200--19473248 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
19473190 GATTAAATCT
*
19473200 AAATATAAAATAAATAATTAAAATTC
1 AAATATAAAATAAATAACTAAAATTC
19473226 AAATA-AAAATAAAT-ACTAGAAAT
1 AAATATAAAATAAATAACTA-AAAT
19473249 AAATTGAACG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 3 0.14
25 13 0.62
26 5 0.24
ACGTcount: A:0.67, C:0.04, G:0.02, T:0.27
Consensus pattern (26 bp):
AAATATAAAATAAATAACTAAAATTC
Found at i:19479441 original size:21 final size:21
Alignment explanation
Indices: 19479415--19479522 Score: 153
Period size: 21 Copynumber: 5.1 Consensus size: 21
19479405 GCTCGAAATT
19479415 TGAACAGAAGCTCGTAAGAGC
1 TGAACAGAAGCTCGTAAGAGC
* *
19479436 TGAACAGAAACTCATAAGAGC
1 TGAACAGAAGCTCGTAAGAGC
* *
19479457 TGAACAAAAGCTCATAAGAGC
1 TGAACAGAAGCTCGTAAGAGC
* *
19479478 TTAATAGAAGCTCGTAAGAGC
1 TGAACAGAAGCTCGTAAGAGC
*
19479499 TGAACAGAAGCTCGTGAGAGC
1 TGAACAGAAGCTCGTAAGAGC
19479520 TGA
1 TGA
19479523 TCCACCCAAT
Statistics
Matches: 76, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 76 1.00
ACGTcount: A:0.41, C:0.18, G:0.25, T:0.17
Consensus pattern (21 bp):
TGAACAGAAGCTCGTAAGAGC
Found at i:19483465 original size:37 final size:37
Alignment explanation
Indices: 19483377--19483505 Score: 154
Period size: 37 Copynumber: 3.5 Consensus size: 37
19483367 TATCTACTAA
* * * *
19483377 TATACGGAAAGAAGCTCAATCGAGCAAATCCTA-TGT
1 TATACTGAATGAAGCTCAATCAAGTAAATCCTATTGT
* *
19483413 TATGCTGAATAAAGCTCAATCAAGTAAATCCTATTGT
1 TATACTGAATGAAGCTCAATCAAGTAAATCCTATTGT
*
19483450 TATATTGAATGAAGCTCAATCAA-TCAAATCCTATTGT
1 TATACTGAATGAAGCTCAATCAAGT-AAATCCTATTGT
* *
19483487 TATACAGAGTGAAGCTCAA
1 TATACTGAATGAAGCTCAA
19483506 ACGAGTAGAA
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
36 28 0.35
37 51 0.65
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.29
Consensus pattern (37 bp):
TATACTGAATGAAGCTCAATCAAGTAAATCCTATTGT
Found at i:19486845 original size:18 final size:19
Alignment explanation
Indices: 19486818--19486859 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
19486808 TGTAGAAGGG
*
19486818 TGAAACTGA-GATCAATTT
1 TGAAACTGAGGATCAAATT
* *
19486836 TGAAATTGAGGCTCAAATT
1 TGAAACTGAGGATCAAATT
19486855 TGAAA
1 TGAAA
19486860 GTTATAACAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.40, C:0.10, G:0.19, T:0.31
Consensus pattern (19 bp):
TGAAACTGAGGATCAAATT
Found at i:19489660 original size:18 final size:19
Alignment explanation
Indices: 19489633--19489674 Score: 68
Period size: 18 Copynumber: 2.3 Consensus size: 19
19489623 AAATATTGTG
19489633 AAAATCATTAAAAATT-TA
1 AAAATCATTAAAAATTATA
*
19489651 AAAATGATTAAAAATTATA
1 AAAATCATTAAAAATTATA
19489670 AAAAT
1 AAAAT
19489675 AATAAGATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 15 0.68
19 7 0.32
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.31
Consensus pattern (19 bp):
AAAATCATTAAAAATTATA
Done.