Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62811768
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 736185 characters in sequence are not A, C, G, or T
File 81 of 211
Found at i:21984729 original size:50 final size:50
Alignment explanation
Indices: 21984605--21985124 Score: 335
Period size: 50 Copynumber: 10.4 Consensus size: 50
21984595 ACCCCTGAGG
* * * *
21984605 TTGCAGTTAAAAAGATTGAAGCCACAACGGCAAATCTTACTT-CCTGGCA
1 TTGCAATTAAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACA
* * ** * * * *
21984654 ATGCAGTGGAACAGATTGAAGCTACAACGGTGAATTTTATTTCCCTGACA
1 TTGCAATTAAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACA
*
21984704 TTGCAATTAAAAAGATTGAAACTACAACGGCGAATCTTACTTCCCT-AGCGA
1 TTGCAATTAAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGA-C-A
* ** * * * * *
21984755 -TGCAGTGGAACAGATTGAAGCTACAATGGCAAATCTTGCTTCCCCGACA
1 TTGCAATTAAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACA
* * * * * * *
21984804 TTTCAATTAAAAAGAATGAAGCCACAACAGCGAATCTTACTTTCCTGGCG
1 TTGCAATTAAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACA
* * ** * ** ** * *
21984854 GTGCAGTGGAACAGATTGAAAATACAACGGTAAATCTTGCTTCCCCGACA
1 TTGCAATTAAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACA
* ** * ***
21984904 TTGCAATTAAAAATATTGAAGCCCCAACGGTGAATCTTACTTCCCTGGTG
1 TTGCAATTAAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACA
* * ** ** * * *
21984954 GTGCAGTGGAGCAGATTGAAGCTACAACGACGAATCTTGCTTCCCCGACA
1 TTGCAATTAAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACA
* ** ***
21985004 TTGCAATTAAAAAGATTGAAGCCACAACGGTAAATCTTACTTCCCTGGTG
1 TTGCAATTAAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACA
* * * ** * * * * *
21985054 GTGTAGTGGAACAGATTGAAGCTACAACAGCGAATTTTGCTTCCCCGACA
1 TTGCAATTAAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACA
* **
21985104 TTGCAGTTAAATGGATTGAAG
1 TTGCAATTAAAAAGATTGAAG
21985125 TCATCATGGC
Statistics
Matches: 336, Mismatches: 130, Indels: 9
0.71 0.27 0.02
Matches are distributed among these distances:
49 35 0.10
50 299 0.89
51 2 0.01
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25
Consensus pattern (50 bp):
TTGCAATTAAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACA
Found at i:21985163 original size:100 final size:100
Alignment explanation
Indices: 21984605--21985142 Score: 693
Period size: 100 Copynumber: 5.4 Consensus size: 100
21984595 ACCCCTGAGG
* * **
21984605 TTGCAGTTAAAAAGATTGAAGCCACAACGGCAAATCTTACTT-CCTGGCAATGCAGTGGAACAGA
1 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGA
* * ** *
21984669 TTGAAGCTACAACGGTGAATTTTATTTCCCTGACA
66 TTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
* * * *
21984704 TTGCAATTAAAAAGATTGAAACTACAACGGCGAATCTTACTTCCCTAGCGATGCAGTGGAACAGA
1 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGA
* *
21984769 TTGAAGCTACAATGGCAAATCTTGCTTCCCCGACA
66 TTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
* * * *
21984804 TTTCAATTAAAAAGAATGAAGCCACAACAGCGAATCTTACTTTCCTGGCGGTGCAGTGGAACAGA
1 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGA
** **
21984869 TTGAAAATACAACGGTAAATCTTGCTTCCCCGACA
66 TTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
* * * * *
21984904 TTGCAATTAAAAATATTGAAGCCCCAACGGTGAATCTTACTTCCCTGGTGGTGCAGTGGAGCAGA
1 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGA
*
21984969 TTGAAGCTACAACGACGAATCTTGCTTCCCCGACA
66 TTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
** * *
21985004 TTGCAATTAAAAAGATTGAAGCCACAACGGTAAATCTTACTTCCCTGGTGGTGTAGTGGAACAGA
1 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGA
* *
21985069 TTGAAGCTACAACAGCGAATTTTGCTTCCCCGACA
66 TTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
* ** * *
21985104 TTGCAGTTAAATGGATTGAAGTCATC-ATGGCGAATCTTA
1 TTGCAATTAAAAAGATTGAAGCCA-CAACGGCGAATCTTA
21985143 TCTCATTGAA
Statistics
Matches: 383, Mismatches: 54, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
99 38 0.10
100 344 0.90
101 1 0.00
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (100 bp):
TTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGA
TTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
Found at i:21985186 original size:44 final size:44
Alignment explanation
Indices: 21985136--21985527 Score: 156
Period size: 44 Copynumber: 8.9 Consensus size: 44
21985126 CATCATGGCG
* * * *
21985136 AATCTTATCTCATTGAAGTTGCAGTGGAGCAAATTGAAGCCACA
1 AATCTTATCTCCTTAAAGTTGCAGTGGAGCAGATTGAAGCAACA
* *
21985180 AATCTTATC-CCTCTAAAGTTGCAGTGGGGCAGATTGAAGATAACA
1 AATCTTATCTCCT-TAAAGTTGCAGTGGAGCAGATTGAAG-CAACA
* * * *
21985225 AATCTTATTTCCCTAAAGTTGTAGTGGAACAGATTGAAGCTAAATAACA
1 AATCTTATCTCCTTAAAGTTGCAGTGGAGCAGATTGAAGC-----AACA
* * * * * *
21985274 GATCTTAT-TTCTCTGAAGTTGCAGTAGAGCAGATT---GCATCC
1 AATCTTATCTCCT-TAAAGTTGCAGTGGAGCAGATTGAAGCAACA
* * * ** *
21985315 AGTCTTATCTTCC-TGAAGTTGCAGTGGAGCAGATAGAAAAAACC
1 AATCTTATC-TCCTTAAAGTTGCAGTGGAGCAGATTGAAGCAACA
* * * * * * * *
21985359 AATCCTATCTCC-CAGAAGTTGTAGTTGAGCGGATTAAAACCACA
1 AATCTTATCTCCTTA-AAGTTGCAGTGGAGCAGATTGAAGCAACA
* ** * * * * * *
21985403 GATCTTATCTTTTTGAAGTTGCAATAGAGCAGA-T--CGCATCC
1 AATCTTATCTCCTTAAAGTTGCAGTGGAGCAGATTGAAGCAACA
* * * * ** * *
21985444 AGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACAGAAGAAACC
1 AATCTTATCTCCTTAAAGTTGCAGTGGAGCAGATTGAAGCAACA
* * * * *
21985488 AATCCTATCTCCCTGAAGTTGCACTGGAACAGATTGAAGC
1 AATCTTATCTCCTTAAAGTTGCAGTGGAGCAGATTGAAGC
21985528 TAAATAATAG
Statistics
Matches: 253, Mismatches: 76, Indels: 38
0.69 0.21 0.10
Matches are distributed among these distances:
41 55 0.22
43 8 0.03
44 121 0.48
45 34 0.13
46 4 0.02
48 2 0.01
49 29 0.11
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (44 bp):
AATCTTATCTCCTTAAAGTTGCAGTGGAGCAGATTGAAGCAACA
Found at i:21985241 original size:45 final size:45
Alignment explanation
Indices: 21985151--21985309 Score: 160
Period size: 49 Copynumber: 3.5 Consensus size: 45
21985141 TATCTCATTG
* ** *
21985151 AAGTTGCAGTGGAGCAAATTGAAG-CCACAAATCTTA-TCCCTCTA
1 AAGTTGCAGTGGAGCAGATTGAAGATAACAAATCTTATTTCC-CTA
*
21985195 AAGTTGCAGTGGGGCAGATTGAAGATAACAAATCTTATTTCCCTA
1 AAGTTGCAGTGGAGCAGATTGAAGATAACAAATCTTATTTCCCTA
* * * * *
21985240 AAGTTGTAGTGGAACAGATTGAAGCTAAATAACAGATCTTATTTCTCTG
1 AAGTTGCAGTGGAGCAGATTGAAG----ATAACAAATCTTATTTCCCTA
*
21985289 AAGTTGCAGTAGAGCAGATTG
1 AAGTTGCAGTGGAGCAGATTG
21985310 CATCCAGTCT
Statistics
Matches: 95, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
44 22 0.23
45 34 0.36
46 3 0.03
49 36 0.38
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.28
Consensus pattern (45 bp):
AAGTTGCAGTGGAGCAGATTGAAGATAACAAATCTTATTTCCCTA
Found at i:21985431 original size:129 final size:129
Alignment explanation
Indices: 21985271--21985508 Score: 388
Period size: 129 Copynumber: 1.8 Consensus size: 129
21985261 AAGCTAAATA
* * *
21985271 ACAGATCTTATTTCTCTGAAGTTGCAGTAGAGCAGATTGCATCCAGTCTTATCTTCCTGAAGTTG
1 ACAGATCTTATTTCTCTGAAGTTGCAATAGAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTG
*
21985336 CAGTGGAGCAGATAGAAAAAACCAATCCTATCTCCCAGAAGTTGTAGTTGAGCGGATTAAAACC
66 CAGTGGAGCAGACAGAAAAAACCAATCCTATCTCCCAGAAGTTGTAGTTGAGCGGATTAAAACC
*
21985400 ACAGATCTTATCTT-TTTGAAGTTGCAATAGAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTT
1 ACAGATCTTAT-TTCTCTGAAGTTGCAATAGAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTT
* * *
21985464 GCAGTGGAGTAGACAGAAGAAACCAATCCTATCTCCCTGAAGTTG
65 GCAGTGGAGCAGACAGAAAAAACCAATCCTATCTCCCAGAAGTTG
21985509 CACTGGAACA
Statistics
Matches: 100, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
129 98 0.98
130 2 0.02
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (129 bp):
ACAGATCTTATTTCTCTGAAGTTGCAATAGAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTG
CAGTGGAGCAGACAGAAAAAACCAATCCTATCTCCCAGAAGTTGTAGTTGAGCGGATTAAAACC
Found at i:21987279 original size:128 final size:127
Alignment explanation
Indices: 21987034--21987279 Score: 332
Period size: 128 Copynumber: 1.9 Consensus size: 127
21987024 GATCCAACAC
* * * * * *
21987034 TTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATCAAGTCTTATCTCCCTAAACAGTAGTGGAG
1 TTATCTCTCTAAAGTTACAGTAGAGCAGATCGCATCAAGCCTTATCTCCCGAAACAGCAGTAGAG
*
21987099 CAGACAGAAGAAATCAATCCTATCTCCCTAAAGTTGCAGTGGAGCGGATTAAACCACAAATG
66 CAGACAGAAGAAATCAATCCTATCTCCCTAAAGTTGCAGTGGAGCGAATTAAACCACAAATG
* ***
21987161 TTATCTCTCTAAAGTTACAGTAGAGCAGATCGCATCCAGCCTTATCTCCCGGAAGTTGCAGTAGA
1 TTATCTCTCTAAAGTTACAGTAGAGCAGATCGCATCAAGCCTTATCTCCC-GAAACAGCAGTAGA
* ** *
21987226 GCAGACTGAAGCTA-CTAATCCTATCTCCCTGAAGTTGCAGTGGAGCGAATTAAA
65 GCAGACAGAAGAAATC-AATCCTATCTCCCTAAAGTTGCAGTGGAGCGAATTAAA
21987280 ACGATGAATC
Statistics
Matches: 102, Mismatches: 15, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
127 47 0.46
128 55 0.54
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (127 bp):
TTATCTCTCTAAAGTTACAGTAGAGCAGATCGCATCAAGCCTTATCTCCCGAAACAGCAGTAGAG
CAGACAGAAGAAATCAATCCTATCTCCCTAAAGTTGCAGTGGAGCGAATTAAACCACAAATG
Found at i:21989073 original size:3 final size:3
Alignment explanation
Indices: 21989065--21989095 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
21989055 TTTAATTTCG
*
21989065 TAT TAT TAT TAT CAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
21989096 TGCTCATTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:21991561 original size:336 final size:333
Alignment explanation
Indices: 21991138--21991811 Score: 1285
Period size: 336 Copynumber: 2.0 Consensus size: 333
21991128 TAAAAGTATA
21991138 GGAATTAAATTATAAATTATCTAATTTATCTCAAAGAGGGTAGAAATGAAAATTTCACCACCCAA
1 GGAATTAAATTATAAATTATCTAATTTATCTCAAAGAGGGTAGAAATGAAAATTTCACCACCCAA
* *
21991203 GGACTTTTGATAAAGACAATATGTGAATTATGAGATTGGAATTAATGGTTTTTATTCGATGTGAA
66 GGACTTTTGATAAAGACAATATGTGAATTATAAGATTGGAATTAATGGTTTTTATTCGATGCGAA
21991268 GAAATTGTGCAAAAAGGTAAAAATGGTAATTGTGTCATATAAAGGCATTTTGGTCTTTTCTTAAG
131 GAAATTGTGCAAAAAGGTAAAAATGGTAATTGTGTCATATAAAGGCATTTTGGTCTTTTCTTAAG
21991333 TATTTATATTGAAAAGATTATTTTGATGATATATTTGATATATGGAATGAATTTGGACCATTGGA
196 TATTTATATTGAAAAGATTATTTTGATGATATATTTGATATATGGAATGAATTTGGACCATTGGA
21991398 TGAGATTTTATAAGGTGATGATGAATTGTGAACCACAAATTTGAATCGGAGTTTGACTTGGACTT
261 TGAGATTTTATAA-G-G-TGATGAATTGTGAACCACAAATTTGAATCGGAGTTTGACTTGGACTT
*
21991463 TGACTAAATTG
323 TGACCAAATTG
21991474 GGAATTAAATTATAAATTATCTAATTTATCTCAAAGAGGGTAGAAATGAAAATTTCACCACCCAA
1 GGAATTAAATTATAAATTATCTAATTTATCTCAAAGAGGGTAGAAATGAAAATTTCACCACCCAA
21991539 GGACTTTTGATAAAGACAATATGTGAATTATAAGATTGGAATTAATGGTTTTTATTCGATGCGAA
66 GGACTTTTGATAAAGACAATATGTGAATTATAAGATTGGAATTAATGGTTTTTATTCGATGCGAA
21991604 GAAATTGTGCAAAAAGGTAAAAATGGTAATTGTGTCATATAAAGGCATTTTGGTCTTTTCTTAAG
131 GAAATTGTGCAAAAAGGTAAAAATGGTAATTGTGTCATATAAAGGCATTTTGGTCTTTTCTTAAG
21991669 TATTTATATTGAAAAGATTATTTTGATGATATATTTGATATATGGAATGAATTTGGACCATTGGA
196 TATTTATATTGAAAAGATTATTTTGATGATATATTTGATATATGGAATGAATTTGGACCATTGGA
21991734 TGAGATTTTATAAGGTGATGAATTGTGAACCACAAATTTGAATCGGAGTTTGACTTGGACTTTGA
261 TGAGATTTTATAAGGTGATGAATTGTGAACCACAAATTTGAATCGGAGTTTGACTTGGACTTTGA
*
21991799 CCAAGTTG
326 CCAAATTG
21991807 GGAAT
1 GGAAT
21991812 GGTCTTATTT
Statistics
Matches: 334, Mismatches: 4, Indels: 3
0.98 0.01 0.01
Matches are distributed among these distances:
333 61 0.18
334 1 0.00
335 1 0.00
336 271 0.81
ACGTcount: A:0.36, C:0.08, G:0.20, T:0.36
Consensus pattern (333 bp):
GGAATTAAATTATAAATTATCTAATTTATCTCAAAGAGGGTAGAAATGAAAATTTCACCACCCAA
GGACTTTTGATAAAGACAATATGTGAATTATAAGATTGGAATTAATGGTTTTTATTCGATGCGAA
GAAATTGTGCAAAAAGGTAAAAATGGTAATTGTGTCATATAAAGGCATTTTGGTCTTTTCTTAAG
TATTTATATTGAAAAGATTATTTTGATGATATATTTGATATATGGAATGAATTTGGACCATTGGA
TGAGATTTTATAAGGTGATGAATTGTGAACCACAAATTTGAATCGGAGTTTGACTTGGACTTTGA
CCAAATTG
Found at i:21996809 original size:47 final size:47
Alignment explanation
Indices: 21996713--21996809 Score: 151
Period size: 47 Copynumber: 2.1 Consensus size: 47
21996703 TTGAAACATT
* * *
21996713 TTGATATATTTTGGTAGTATTTGATGATGGTTTATAGTGTTTTTGAA
1 TTGATACATTTTGGTAGTATTTGATGATGGTTTATAGTGTTATTAAA
21996760 TTGATACATTTTGGTAGTATTTGATGATGGTTTAT-GTGCTTATTAAA
1 TTGATACATTTTGGTAGTATTTGATGATGGTTTATAGTG-TTATTAAA
21996807 TTG
1 TTG
21996810 CTAACTTATG
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
46 3 0.07
47 43 0.93
ACGTcount: A:0.24, C:0.02, G:0.23, T:0.52
Consensus pattern (47 bp):
TTGATACATTTTGGTAGTATTTGATGATGGTTTATAGTGTTATTAAA
Found at i:21998224 original size:13 final size:13
Alignment explanation
Indices: 21998206--21998230 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
21998196 AAAATTCATC
21998206 AAAATTAATTATA
1 AAAATTAATTATA
21998219 AAAATTAATTAT
1 AAAATTAATTAT
21998231 GTACACTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
AAAATTAATTATA
Found at i:21999507 original size:20 final size:18
Alignment explanation
Indices: 21999460--21999566 Score: 62
Period size: 20 Copynumber: 5.8 Consensus size: 18
21999450 CAAGATAAAC
21999460 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
*
21999477 ATTAAGA-TAATCACTTTAGT
1 ATTAA-ATTAAT-A-TTTAAT
**
21999497 ATTAAATTAATAAAATAAT
1 ATTAAATTAAT-ATTTAAT
21999516 ATTAAGA-TAAGTA-TTAA-
1 ATTAA-ATTAA-TATTTAAT
*
21999533 ATTAAATTTAATATTAAACT
1 ATTAAA-TTAATATTTAA-T
*
21999553 ATTAAAATAATATT
1 ATTAAATTAATATT
21999567 ATTTTTCAAA
Statistics
Matches: 70, Mismatches: 8, Indels: 22
0.70 0.08 0.22
Matches are distributed among these distances:
16 1 0.01
17 15 0.21
18 10 0.14
19 21 0.30
20 23 0.33
ACGTcount: A:0.52, C:0.03, G:0.04, T:0.41
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:22009884 original size:27 final size:27
Alignment explanation
Indices: 22009853--22009905 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
22009843 TTTCGAGTCG
**
22009853 TCTAGGATGAGTGCTTCGACCGAGTAT
1 TCTAGGATGAGCACTTCGACCGAGTAT
*
22009880 TCTAGGATGAGCACTTCGACTGAGTA
1 TCTAGGATGAGCACTTCGACCGAGTA
22009906 GTCTTCTTCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (27 bp):
TCTAGGATGAGCACTTCGACCGAGTAT
Found at i:22010204 original size:12 final size:12
Alignment explanation
Indices: 22010187--22010237 Score: 50
Period size: 12 Copynumber: 4.1 Consensus size: 12
22010177 ACTTAATCAC
22010187 TTTAATATTAAA
1 TTTAATATTAAA
*
22010199 TTTAAT-CTAATA
1 TTTAATATTAA-A
*
22010211 TATATTATATTAAA
1 T-T-TAATATTAAA
22010225 TTTAATATTAAA
1 TTTAATATTAAA
22010237 T
1 T
22010238 CTTATTAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
11 3 0.10
12 18 0.58
13 2 0.06
14 5 0.16
15 3 0.10
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (12 bp):
TTTAATATTAAA
Found at i:22010215 original size:21 final size:21
Alignment explanation
Indices: 22010191--22010232 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
22010181 AATCACTTTA
*
22010191 ATATTAAATTTAATCTAATAT
1 ATATTAAATTAAATCTAATAT
* *
22010212 ATATTATATTAAATTTAATAT
1 ATATTAAATTAAATCTAATAT
22010233 TAAATCTTAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (21 bp):
ATATTAAATTAAATCTAATAT
Found at i:22010371 original size:8 final size:8
Alignment explanation
Indices: 22010358--22010385 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
22010348 AATTAAATTT
22010358 AATATTAA
1 AATATTAA
22010366 AATATTAA
1 AATATTAA
22010374 AATATTAA
1 AATATTAA
22010382 AATA
1 AATA
22010386 ATATTATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (8 bp):
AATATTAA
Found at i:22014522 original size:13 final size:13
Alignment explanation
Indices: 22014504--22014529 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
22014494 CTAGATTAAA
22014504 TAATTAATTCAAT
1 TAATTAATTCAAT
22014517 TAATTAATTCAAT
1 TAATTAATTCAAT
22014530 AACTTACAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (13 bp):
TAATTAATTCAAT
Found at i:22020204 original size:29 final size:29
Alignment explanation
Indices: 22020094--22020284 Score: 176
Period size: 29 Copynumber: 6.7 Consensus size: 29
22020084 CCACAAGGCA
* *
22020094 TTTAACTGAGATAGCCATAAAGGAATCCT
1 TTTAACTGAGATAGCCACAAAGGCATCCT
* *
22020123 TTTAACCGAGATAGCCACAAAGGTATCCT
1 TTTAACTGAGATAGCCACAAAGGCATCCT
22020152 TTTAACT-AGTATAGCCACAAAGGCATCCT
1 TTTAACTGAG-ATAGCCACAAAGGCATCCT
* * *
22020181 TTTAACTGAGATTGCCACAAAGGCTTAC-
1 TTTAACTGAGATAGCCACAAAGGCATCCT
* ** * * *
22020209 TTTAACAGAGATTTCCATAAAGGC-TTCG
1 TTTAACTGAGATAGCCACAAAGGCATCCT
* **
22020237 TTTAA-TAGAGATCGCCACAAAGGTTTCC-
1 TTTAACT-GAGATAGCCACAAAGGCATCCT
*
22020265 TTTAACAGAGATAGCCACAA
1 TTTAACTGAGATAGCCACAA
22020285 CGGCTCACTT
Statistics
Matches: 136, Mismatches: 20, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
27 2 0.01
28 58 0.43
29 74 0.54
30 2 0.01
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27
Consensus pattern (29 bp):
TTTAACTGAGATAGCCACAAAGGCATCCT
Found at i:22020221 original size:28 final size:28
Alignment explanation
Indices: 22020165--22020294 Score: 127
Period size: 28 Copynumber: 4.6 Consensus size: 28
22020155 AACTAGTATA
* * *
22020165 GCCACAAAGGCATCCTTTTAACTGAGATT
1 GCCACAAAGGCTTAC-TTTAACAGAGATT
22020194 GCCACAAAGGCTTACTTTAACAGAGATT
1 GCCACAAAGGCTTACTTTAACAGAGATT
* * * *
22020222 TCCATAAAGGCTT-CGTTTAATAGAGATC
1 GCCACAAAGGCTTAC-TTTAACAGAGATT
* * *
22020250 GCCACAAAGGTTTCCTTTAACAGAGATA
1 GCCACAAAGGCTTACTTTAACAGAGATT
* *
22020278 GCCACAACGGCTCACTT
1 GCCACAAAGGCTTACTT
22020295 ATACAAAAAT
Statistics
Matches: 83, Mismatches: 16, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
27 1 0.01
28 68 0.82
29 14 0.17
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (28 bp):
GCCACAAAGGCTTACTTTAACAGAGATT
Found at i:22024575 original size:284 final size:284
Alignment explanation
Indices: 22024060--22024909 Score: 1655
Period size: 284 Copynumber: 3.0 Consensus size: 284
22024050 ACTTCAATAC
*
22024060 CTTTACGATGAAAGGCGCTTTCATACGATCAACATAGGCAAGGTTGAAGATGAAATCACACTACA
1 CTTTCCGATGAAAGGCGCTTTCATACGATCAACATAGGCAAGGTTGAAGATGAAATCACACTACA
*
22024125 TGAGCCCGAAGGTAAGCGAGGTAAGGAAATTTTAGCCACTGAGTCTCGTGCAGATTTGAAAATTA
66 TGAGCCCGAAGGTAAGCGAGGTAAGGAAATTTTAGCCACTGAGTCCCGTGCAGATTTGAAAATTA
22024190 TTGATAAAACTTTAGGTGACTTAGTTCTTAAAAGATCCCTTCATTTTGTTCTGGTTAATTGTTAC
131 TTGATAAAACTTTAGGTGACTTAGTTCTTAAAAGATCCCTTCATTTTGTTCTGGTTAATTGTTAC
22024255 TCTTCAATTGTGGTTGATAAAGTCATTACGAAAGGAAGCATGAGCTGTTATTCTCTTAATTTGCC
196 TCTTCAATTGTGGTTGATAAAGTCATTACGAAAGGAAGCATGAGCTGTTATTCTCTTAATTTGCC
22024320 TTGTGTAAAATTCTCGAATTGGCG
261 TTGTGTAAAATTCTCGAATTGGCG
* *
22024344 CTTTCCGATGAAAGGCGCTTTCATATGTTCAACATAGGCAAGGTTGAAGATGAAATCACACTACA
1 CTTTCCGATGAAAGGCGCTTTCATACGATCAACATAGGCAAGGTTGAAGATGAAATCACACTACA
22024409 TGAGCCCGAAGGTAAGCGAGGTAAGGAAATTTTAGCCACTGAGTCCCGTGCAGATTTGAAAATTA
66 TGAGCCCGAAGGTAAGCGAGGTAAGGAAATTTTAGCCACTGAGTCCCGTGCAGATTTGAAAATTA
22024474 TTGATAAAACTTTAGGTGACTTAGTTCTTAAAAGATCCCTTCATTTTGTTCTGGTTAATTGTTAC
131 TTGATAAAACTTTAGGTGACTTAGTTCTTAAAAGATCCCTTCATTTTGTTCTGGTTAATTGTTAC
22024539 TCTTCAATTGTGGTTGATAAAGTCATTACGAAAGGAAGCATGAGCTGTTATTCTCTTAATTTGCC
196 TCTTCAATTGTGGTTGATAAAGTCATTACGAAAGGAAGCATGAGCTGTTATTCTCTTAATTTGCC
22024604 TTGTGTAAAATTCTCGAATTGGCG
261 TTGTGTAAAATTCTCGAATTGGCG
22024628 CTTTCCGATGAAAGGCGCTTTCATACGATCAACATAGGCAAGGTTGAAGATGAAATCACACTACA
1 CTTTCCGATGAAAGGCGCTTTCATACGATCAACATAGGCAAGGTTGAAGATGAAATCACACTACA
*
22024693 TGAGCCCGAAGGTAAGCGAGGTAAGGAAATTTTAGCCACTGAGTCCCGTGCAAATTTGAAAATTA
66 TGAGCCCGAAGGTAAGCGAGGTAAGGAAATTTTAGCCACTGAGTCCCGTGCAGATTTGAAAATTA
22024758 TTGATAAAACTTTAGGTGACTTAGTTCTTAAAAGATCCCTTCATTTTGTTCTGGTTAATTGTTAC
131 TTGATAAAACTTTAGGTGACTTAGTTCTTAAAAGATCCCTTCATTTTGTTCTGGTTAATTGTTAC
22024823 TCTTCAATTGTGGTTGATAAAGTCATTACGAAAGGAAGCATGAGCTGTTATTCTCTTAATTTGCC
196 TCTTCAATTGTGGTTGATAAAGTCATTACGAAAGGAAGCATGAGCTGTTATTCTCTTAATTTGCC
22024888 TTGTGTAAAATTCTCGAATTGG
261 TTGTGTAAAATTCTCGAATTGG
22024910 TGCAAATCTG
Statistics
Matches: 559, Mismatches: 7, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
284 559 1.00
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (284 bp):
CTTTCCGATGAAAGGCGCTTTCATACGATCAACATAGGCAAGGTTGAAGATGAAATCACACTACA
TGAGCCCGAAGGTAAGCGAGGTAAGGAAATTTTAGCCACTGAGTCCCGTGCAGATTTGAAAATTA
TTGATAAAACTTTAGGTGACTTAGTTCTTAAAAGATCCCTTCATTTTGTTCTGGTTAATTGTTAC
TCTTCAATTGTGGTTGATAAAGTCATTACGAAAGGAAGCATGAGCTGTTATTCTCTTAATTTGCC
TTGTGTAAAATTCTCGAATTGGCG
Found at i:22025374 original size:9 final size:9
Alignment explanation
Indices: 22025360--22025385 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
22025350 TGTGAAACTC
22025360 TGTGAATCG
1 TGTGAATCG
22025369 TGTGAATCG
1 TGTGAATCG
22025378 TGTGAATC
1 TGTGAATC
22025386 TTTTCAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.23, C:0.12, G:0.31, T:0.35
Consensus pattern (9 bp):
TGTGAATCG
Found at i:22028530 original size:19 final size:19
Alignment explanation
Indices: 22028480--22028516 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
22028470 AGTGAGAGAT
*
22028480 ATTTGTAACTGTGAGGAGC
1 ATTTCTAACTGTGAGGAGC
22028499 ATTTCTAACTGTGAGGAG
1 ATTTCTAACTGTGAGGAG
22028517 TTTTTCAACT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.27, C:0.11, G:0.30, T:0.32
Consensus pattern (19 bp):
ATTTCTAACTGTGAGGAGC
Found at i:22037700 original size:25 final size:25
Alignment explanation
Indices: 22037662--22037714 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 25
22037652 TTTGTGAAGC
*
22037662 CTTTGTGGAGAACT-CTCTGTAAATT
1 CTTTGTGGAGAACTCCT-TGTAAAAT
22037687 CTTTGTGGCA-AACTCCTTGTAAAAT
1 CTTTGTGG-AGAACTCCTTGTAAAAT
22037712 CTT
1 CTT
22037715 CTTGGCATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
25 22 0.88
26 3 0.12
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.40
Consensus pattern (25 bp):
CTTTGTGGAGAACTCCTTGTAAAAT
Found at i:22046808 original size:6 final size:6
Alignment explanation
Indices: 22046769--22046804 Score: 63
Period size: 6 Copynumber: 6.0 Consensus size: 6
22046759 TTCATCCCCA
*
22046769 AAAATC AAAATC AAAATC AAAATC AAAATC CAAATC
1 AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC
22046805 CAAACCCAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.64, C:0.19, G:0.00, T:0.17
Consensus pattern (6 bp):
AAAATC
Found at i:22050845 original size:36 final size:30
Alignment explanation
Indices: 22050771--22050857 Score: 165
Period size: 30 Copynumber: 2.9 Consensus size: 30
22050761 TGAGCAGGAA
22050771 TGATAAAGGGAAAGGGAAAATGGTTGATGC
1 TGATAAAGGGAAAGGGAAAATGGTTGATGC
22050801 TGATAAAGGGAAAGGGAAAATGGTTGATGC
1 TGATAAAGGGAAAGGGAAAATGGTTGATGC
*
22050831 TGATAAAGGGAAAGGGAAACTGGTTGA
1 TGATAAAGGGAAAGGGAAAATGGTTGA
22050858 CATCATACCG
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 56 1.00
ACGTcount: A:0.40, C:0.03, G:0.37, T:0.20
Consensus pattern (30 bp):
TGATAAAGGGAAAGGGAAAATGGTTGATGC
Found at i:22055589 original size:30 final size:30
Alignment explanation
Indices: 22055553--22055611 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
22055543 GATACATAGC
22055553 TTGTCACTTAAGCTCGAGTGAGGAGCTTTA
1 TTGTCACTTAAGCTCGAGTGAGGAGCTTTA
22055583 TTGTCACTTAAGCTCGAGTGAGGAGCTTT
1 TTGTCACTTAAGCTCGAGTGAGGAGCTTT
22055612 GCTGATACAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.22, C:0.17, G:0.27, T:0.34
Consensus pattern (30 bp):
TTGTCACTTAAGCTCGAGTGAGGAGCTTTA
Found at i:22055659 original size:42 final size:42
Alignment explanation
Indices: 22055586--22055746 Score: 209
Period size: 42 Copynumber: 3.8 Consensus size: 42
22055576 AGCTTTATTG
*
22055586 TCACTTAAGCTCGA-GT-GAGGAGCTTTGCTGATACACAACTTA
1 TCACTTAAGCTC-ATGTAG-GGAGCTTCGCTGATACACAACTTA
* * * **
22055628 TCGCTTAAGCTCACGTAGGGAGTTTTTCTGATACACAACTTA
1 TCACTTAAGCTCATGTAGGGAGCTTCGCTGATACACAACTTA
* *
22055670 TCACTTAAGCTCATGTGGGGAGCTTCGCTAATACACAACTTA
1 TCACTTAAGCTCATGTAGGGAGCTTCGCTGATACACAACTTA
*
22055712 TCACTTAAGCTCATGTAGGGAGCTTCTCTGATACA
1 TCACTTAAGCTCATGTAGGGAGCTTCGCTGATACA
22055747 TAGCTTGTAA
Statistics
Matches: 104, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
41 1 0.01
42 102 0.98
43 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.30
Consensus pattern (42 bp):
TCACTTAAGCTCATGTAGGGAGCTTCGCTGATACACAACTTA
Found at i:22055730 original size:84 final size:84
Alignment explanation
Indices: 22055586--22055746 Score: 243
Period size: 84 Copynumber: 1.9 Consensus size: 84
22055576 AGCTTTATTG
* * * *
22055586 TCACTTAAGCTCGAGTGAGGAGCTTTGCTGATACACAACTTATCGCTTAAGCTCACGTAGGGAGT
1 TCACTTAAGCTCGAGTGAGGAGCTTCGCTAATACACAACTTATCACTTAAGCTCACGTAGGGAGC
*
22055651 TTTTCTGATACACAACTTA
66 TTCTCTGATACACAACTTA
* *
22055670 TCACTTAAGCTC-ATGTGGGGAGCTTCGCTAATACACAACTTATCACTTAAGCTCATGTAGGGAG
1 TCACTTAAGCTCGA-GTGAGGAGCTTCGCTAATACACAACTTATCACTTAAGCTCACGTAGGGAG
22055734 CTTCTCTGATACA
65 CTTCTCTGATACA
22055747 TAGCTTGTAA
Statistics
Matches: 69, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
83 1 0.01
84 68 0.99
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.30
Consensus pattern (84 bp):
TCACTTAAGCTCGAGTGAGGAGCTTCGCTAATACACAACTTATCACTTAAGCTCACGTAGGGAGC
TTCTCTGATACACAACTTA
Found at i:22055838 original size:13 final size:13
Alignment explanation
Indices: 22055822--22055852 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
22055812 CTGTGTTTTA
22055822 AAAATCATATTTG
1 AAAATCATATTTG
*
22055835 AAAATCGTATTTG
1 AAAATCATATTTG
22055848 AAAAT
1 AAAAT
22055853 AGAGGTTCGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.48, C:0.06, G:0.10, T:0.35
Consensus pattern (13 bp):
AAAATCATATTTG
Found at i:22059885 original size:36 final size:36
Alignment explanation
Indices: 22059845--22059916 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
22059835 CTACAATCTT
22059845 AATAACACTCCATAAATATTTAATAAAATATTTATG
1 AATAACACTCCATAAATATTTAATAAAATATTTATG
22059881 AATAACACTCCATAAATATTTAATAAAATATTTATG
1 AATAACACTCCATAAATATTTAATAAAATATTTATG
22059917 GCTTGGTTTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.50, C:0.11, G:0.03, T:0.36
Consensus pattern (36 bp):
AATAACACTCCATAAATATTTAATAAAATATTTATG
Found at i:22066466 original size:21 final size:20
Alignment explanation
Indices: 22066433--22066471 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
22066423 GTTTTCTCAT
*
22066433 TCAATTGTATTTACAAGTTAG
1 TCAATTATATTTA-AAGTTAG
*
22066454 TCAATTATGTTTAAAGTT
1 TCAATTATATTTAAAGTT
22066472 GAGAACATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.33, C:0.08, G:0.13, T:0.46
Consensus pattern (20 bp):
TCAATTATATTTAAAGTTAG
Found at i:22066699 original size:8 final size:8
Alignment explanation
Indices: 22066686--22066719 Score: 59
Period size: 8 Copynumber: 4.1 Consensus size: 8
22066676 TGAAACTAAA
22066686 AGAGGGAG
1 AGAGGGAG
22066694 AGAGGGAG
1 AGAGGGAG
22066702 AGAGGGAG
1 AGAGGGAG
22066710 AGAGAGGAG
1 AGAG-GGAG
22066719 A
1 A
22066720 TAACTATCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 20 0.80
9 5 0.20
ACGTcount: A:0.41, C:0.00, G:0.59, T:0.00
Consensus pattern (8 bp):
AGAGGGAG
Found at i:22068960 original size:24 final size:25
Alignment explanation
Indices: 22068927--22068980 Score: 101
Period size: 24 Copynumber: 2.2 Consensus size: 25
22068917 TTACTTGATG
22068927 TATTCTTTTATATAATATTTAAAAT
1 TATTCTTTTATATAATATTTAAAAT
22068952 TATT-TTTTATATAATATTTAAAAT
1 TATTCTTTTATATAATATTTAAAAT
22068976 TATTC
1 TATTC
22068981 ATAATATTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
24 24 0.86
25 4 0.14
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (25 bp):
TATTCTTTTATATAATATTTAAAAT
Found at i:22068987 original size:24 final size:24
Alignment explanation
Indices: 22068936--22068987 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
22068926 GTATTCTTTT
** *
22068936 ATATAATATTTAAAATTATTTTTT
1 ATATAATATTTAAAATTATTCATA
22068960 ATATAATATTTAAAATTATTCATA
1 ATATAATATTTAAAATTATTCATA
22068984 ATAT
1 ATAT
22068988 TAAGATAAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (24 bp):
ATATAATATTTAAAATTATTCATA
Found at i:22071624 original size:41 final size:41
Alignment explanation
Indices: 22071539--22071624 Score: 93
Period size: 41 Copynumber: 2.1 Consensus size: 41
22071529 GGAGCAGTGT
* * * * *
22071539 TAGCGGGGTTTTTCTCATAAACGCCGCAAAAGGTAGAGTAA
1 TAGCGGAGTTTTTCACATAAACACCGCAAAAGGTAAAATAA
* *
22071580 TAGCGGAGTTTTT-ACATAAACATCGCAAAAGGTTAAAATTA
1 TAGCGGAGTTTTTCACATAAACACCGCAAAAGG-TAAAATAA
22071621 TAGC
1 TAGC
22071625 ACCATTTTTC
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
40 16 0.43
41 21 0.57
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.27
Consensus pattern (41 bp):
TAGCGGAGTTTTTCACATAAACACCGCAAAAGGTAAAATAA
Found at i:22080833 original size:43 final size:43
Alignment explanation
Indices: 22080743--22080834 Score: 112
Period size: 43 Copynumber: 2.1 Consensus size: 43
22080733 TTTTGCGGCG
* * ***
22080743 TTTGTAAAAAAAACGTCGCTAAAAATCATGTTCTTTAGTGGTG
1 TTTGTAAAAAAAACGTCGCTAAAAATCATGTTCTATAGCGACA
* * *
22080786 TTTGTAATAAAAGCGTCGCTAAAGATCATGTTCTATAGCGACA
1 TTTGTAAAAAAAACGTCGCTAAAAATCATGTTCTATAGCGACA
22080829 TTTGTA
1 TTTGTA
22080835 GGGAAAGTGC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.34, C:0.13, G:0.18, T:0.35
Consensus pattern (43 bp):
TTTGTAAAAAAAACGTCGCTAAAAATCATGTTCTATAGCGACA
Found at i:22081274 original size:21 final size:21
Alignment explanation
Indices: 22081234--22081275 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
22081224 AAAAGTTAGA
22081234 AAAATGAATTATATTCTTTCC
1 AAAATGAATTATATTCTTTCC
22081255 AAAA-GAATATATGATT-TTTCC
1 AAAATGAAT-TAT-ATTCTTTCC
22081276 CATATTAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
20 4 0.21
21 12 0.63
22 3 0.16
ACGTcount: A:0.40, C:0.12, G:0.07, T:0.40
Consensus pattern (21 bp):
AAAATGAATTATATTCTTTCC
Found at i:22081320 original size:75 final size:75
Alignment explanation
Indices: 22081197--22081364 Score: 264
Period size: 75 Copynumber: 2.2 Consensus size: 75
22081187 ACTATAATTA
* * * *
22081197 TTCCCTTATTAATAGAGAAGACAAGTGAAAAGTTAGAAAAATGAATTATATTCTTTCCAAAAGAA
1 TTCCCTTATTAATAGAAAAGAAAAATGAAAAGTTAGAAAAAGGAATTATATTCTTTCCAAAAGAA
*
22081262 TATATGATTT
66 TATAAGATTT
* *
22081272 TTCCCATATTAATAGAAAAGAAAAATGGAAAGTTAGAAAAAGGAATTATATTCTTTCCAAAAGAA
1 TTCCCTTATTAATAGAAAAGAAAAATGAAAAGTTAGAAAAAGGAATTATATTCTTTCCAAAAGAA
22081337 TATAAGATTT
66 TATAAGATTT
*
22081347 TTCCCTTATTAATGGAAA
1 TTCCCTTATTAATAGAAA
22081365 GTTAGAAAAT
Statistics
Matches: 84, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
75 84 1.00
ACGTcount: A:0.45, C:0.10, G:0.13, T:0.32
Consensus pattern (75 bp):
TTCCCTTATTAATAGAAAAGAAAAATGAAAAGTTAGAAAAAGGAATTATATTCTTTCCAAAAGAA
TATAAGATTT
Found at i:22085466 original size:24 final size:24
Alignment explanation
Indices: 22085439--22085514 Score: 100
Period size: 24 Copynumber: 3.2 Consensus size: 24
22085429 GTATGTTATC
22085439 ATGAGCTATAAATCGGTAACCCTA
1 ATGAGCTATAAATCGGTAACCCTA
* * * *
22085463 ATGA-CTATAAAACGGTATGCTCTC
1 ATGAGCTATAAATCGGTA-ACCCTA
22085487 ATGAGCTATAAATCGGTAACCCTA
1 ATGAGCTATAAATCGGTAACCCTA
22085511 ATGA
1 ATGA
22085515 CATGTCATTT
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
23 12 0.29
24 18 0.43
25 12 0.29
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.26
Consensus pattern (24 bp):
ATGAGCTATAAATCGGTAACCCTA
Found at i:22087138 original size:25 final size:25
Alignment explanation
Indices: 22087078--22087167 Score: 94
Period size: 25 Copynumber: 3.6 Consensus size: 25
22087068 GTACATGTAT
* *
22087078 GCTCATAAGAGCTGTA-AACGGTAA
1 GCTCATAAGAGCTGAATAATGGTAA
* **
22087102 GCTCCTCCGAGCTGAATAATGGTAA
1 GCTCATAAGAGCTGAATAATGGTAA
* *
22087127 GCTCATATGAGCTGAGT-ATCGGTAA
1 GCTCATAAGAGCTGAATAAT-GGTAA
22087152 GCTCATAAGAGCTGAA
1 GCTCATAAGAGCTGAA
22087168 ATCGATAACC
Statistics
Matches: 53, Mismatches: 11, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
24 14 0.26
25 39 0.74
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.23
Consensus pattern (25 bp):
GCTCATAAGAGCTGAATAATGGTAA
Found at i:22095564 original size:48 final size:48
Alignment explanation
Indices: 22095468--22095701 Score: 220
Period size: 48 Copynumber: 4.9 Consensus size: 48
22095458 GATTTCTCGA
* * * * * * * *
22095468 TGGCCGACACACAGTCTGTACCACCTTTGTGTAAGAACA-AATTTTTGG
1 TGGCCTACACACAGTCCGTGCCACCCTTGTATCATAACAGAA-TATTGG
* * * * *
22095516 TGGCCTGCACATATTCCGTGCCACCCTTGTATCTTAACAGATTATTGG
1 TGGCCTACACACAGTCCGTGCCACCCTTGTATCATAACAGAATATTGG
* * * *
22095564 TGGCCTACACATAGTCCGTGCCACCCTTTTATCATAATAGAATATCGG
1 TGGCCTACACACAGTCCGTGCCACCCTTGTATCATAACAGAATATTGG
* * *
22095612 TGGCCTACACACAGCCCATGCCACCCTTTTATCATAACAGAATATCT-G
1 TGGCCTACACACAGTCCGTGCCACCCTTGTATCATAACAGAATAT-TGG
* * * *
22095660 TGGCCTGCACACAGTCTGTGCCACTCTTGTGTCATAACAGAA
1 TGGCCTACACACAGTCCGTGCCACCCTTGTATCATAACAGAA
22095702 CATCGTACGC
Statistics
Matches: 152, Mismatches: 32, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
48 151 0.99
49 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.29
Consensus pattern (48 bp):
TGGCCTACACACAGTCCGTGCCACCCTTGTATCATAACAGAATATTGG
Found at i:22096807 original size:29 final size:24
Alignment explanation
Indices: 22096746--22096797 Score: 97
Period size: 24 Copynumber: 2.2 Consensus size: 24
22096736 TGTCCAAAAC
22096746 TTAA-CCAATGGTCTAATTATAAT
1 TTAAGCCAATGGTCTAATTATAAT
22096769 TTAAGCCAATGGTCTAATTATAAT
1 TTAAGCCAATGGTCTAATTATAAT
22096793 TTAAG
1 TTAAG
22096798 GACCTCCAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
23 4 0.14
24 24 0.86
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (24 bp):
TTAAGCCAATGGTCTAATTATAAT
Found at i:22098805 original size:42 final size:42
Alignment explanation
Indices: 22098725--22098806 Score: 105
Period size: 42 Copynumber: 2.0 Consensus size: 42
22098715 CATTTTCTCT
**
22098725 ATGCCATAGTCCAACTATGGTCTTACACATATTTACATATTG
1 ATGCCATAGTCCAACTATGGTCTTACACATATGCACATATTG
*
22098767 ATGCCATAG-CCTAGCTATGGTCTTACACAGTA-GCACATAT
1 ATGCCATAGTCC-AACTATGGTCTTACACA-TATGCACATAT
22098807 CACACCGATA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
41 2 0.06
42 31 0.89
43 2 0.06
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (42 bp):
ATGCCATAGTCCAACTATGGTCTTACACATATGCACATATTG
Found at i:22129353 original size:69 final size:68
Alignment explanation
Indices: 22129218--22129353 Score: 173
Period size: 68 Copynumber: 2.0 Consensus size: 68
22129208 TAGATTAGAT
* * * * *
22129218 TTAATATTAAATTCAATTTGATACTTATATTGATAGTATTTTATTAATTTAATATTACAGTCATT
1 TTAATATTAAATTCAATTTAATACTTATATAGATAGTATTATATTAATTTAATACTAAAGTCATT
22129283 ATC
66 ATC
* * * * *
22129286 TTAATATTAAATTGAATTTAATATTTATCTAGATAAGTATTATATTAATTTAATGCTAAAGTGAT
1 TTAATATTAAATTCAATTTAATACTTATATAGAT-AGTATTATATTAATTTAATACTAAAGTCAT
22129351 TAT
65 TAT
22129354 GTTTAATCAT
Statistics
Matches: 57, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
68 29 0.51
69 28 0.49
ACGTcount: A:0.39, C:0.05, G:0.07, T:0.49
Consensus pattern (68 bp):
TTAATATTAAATTCAATTTAATACTTATATAGATAGTATTATATTAATTTAATACTAAAGTCATT
ATC
Found at i:22135690 original size:10 final size:10
Alignment explanation
Indices: 22135641--22135692 Score: 59
Period size: 10 Copynumber: 5.0 Consensus size: 10
22135631 AGTAACATTT
*
22135641 TTAATTTTAA
1 TTAATTTTGA
*
22135651 TTAATTTTATAA
1 TTAA-TTT-TGA
22135663 TTAATTTTGA
1 TTAATTTTGA
22135673 TTAATTTTGA
1 TTAATTTTGA
*
22135683 TTATTTTTGA
1 TTAATTTTGA
22135693 CATTTTGCAC
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
10 25 0.66
11 6 0.16
12 7 0.18
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.62
Consensus pattern (10 bp):
TTAATTTTGA
Found at i:22143353 original size:114 final size:114
Alignment explanation
Indices: 22143063--22143395 Score: 553
Period size: 113 Copynumber: 2.9 Consensus size: 114
22143053 TTAGAAAATT
*
22143063 CCGCAAAAAACCTAAGCCCAACGACATCGTTTTTCTTAGTTTTCGAGGCTTTGGTGGCGTTTTTG
1 CCGCAAAAAACCTAAGCCCAACGACGTCGTTTTTCTTAGTTTTCGAGGCTTTGGTGGCGTTTTTG
* * *
22143128 GAGAAGCACCGCTAATTCTCAGGGTTTTAGCGACGTTTTTGAAAAAGCG
66 GAGAAGCGCCGCTAATTCTCAAGGTTTTAGCGGCGTTTTTGAAAAAGCG
* * *
22143177 CCGCAAAAGACCTAAGCCCAACGATGTCG-TTTTCTTAGTTTTCGAGGCTTTGGTGGCATTTTTT
1 CCGCAAAAAACCTAAGCCCAACGACGTCGTTTTTCTTAGTTTTCGAGGCTTTGGTGGC-GTTTTT
*
22143241 GGA-AAGCGCCGCTAATTCTCAAGGTTTTAGCGGCGTTTTTTAAAAAGCG
65 GGAGAAGCGCCGCTAATTCTCAAGGTTTTAGCGGCGTTTTTGAAAAAGCG
* *
22143290 CCGTAAAAAAACTAAGCCCAACGACGTCGTTTTTCTTAGTTTTCGAGGCTTTGGTGGCGTTTTTG
1 CCGCAAAAAACCTAAGCCCAACGACGTCGTTTTTCTTAGTTTTCGAGGCTTTGGTGGCGTTTTTG
22143355 GAGAAGCGCCGCTAATTCTCAAGGTTTTAGCGGCGTTTTTG
66 GAGAAGCGCCGCTAATTCTCAAGGTTTTAGCGGCGTTTTTG
22143396 GAGAAGCCCA
Statistics
Matches: 202, Mismatches: 14, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
113 103 0.51
114 99 0.49
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.32
Consensus pattern (114 bp):
CCGCAAAAAACCTAAGCCCAACGACGTCGTTTTTCTTAGTTTTCGAGGCTTTGGTGGCGTTTTTG
GAGAAGCGCCGCTAATTCTCAAGGTTTTAGCGGCGTTTTTGAAAAAGCG
Found at i:22147056 original size:12 final size:13
Alignment explanation
Indices: 22147038--22147068 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
22147028 ATGTTGAATT
22147038 TTAATTAATTTTA
1 TTAATTAATTTTA
22147051 -TAATTAATTTTA
1 TTAATTAATTTTA
22147063 TTAATT
1 TTAATT
22147069 TTGATTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.71
13 5 0.29
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (13 bp):
TTAATTAATTTTA
Found at i:22147067 original size:9 final size:10
Alignment explanation
Indices: 22147034--22147079 Score: 51
Period size: 9 Copynumber: 4.6 Consensus size: 10
22147024 TAACATGTTG
22147034 AATTTTAATT
1 AATTTTAATT
22147044 AATTTTATAATT
1 AA-TTT-TAATT
22147056 AATTTT-ATT
1 AATTTTAATT
*
22147065 AATTTTGATT
1 AATTTTAATT
22147075 -ATTTT
1 AATTTT
22147080 CAAAAAATTT
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
9 14 0.42
10 6 0.18
11 6 0.18
12 7 0.21
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (10 bp):
AATTTTAATT
Found at i:22157300 original size:72 final size:72
Alignment explanation
Indices: 22157212--22157362 Score: 275
Period size: 72 Copynumber: 2.1 Consensus size: 72
22157202 TCAACACCAA
* * *
22157212 ATCATCTATTACACATAGTCTATTTCGAAAGTATAAACTCTCATAGCCACTTAAACTGAAATTAC
1 ATCATCTATTACACATAGTCTATTTCGAAAGTATAAACTCTCATAACCACTTAAACTAAAATCAC
22157277 TGGTTTG
66 TGGTTTG
22157284 ATCATCTATTACACATAGTCTATTTCGAAAGTATAAACTCTCATAACCACTTAAACTAAAATCAC
1 ATCATCTATTACACATAGTCTATTTCGAAAGTATAAACTCTCATAACCACTTAAACTAAAATCAC
22157349 TGGTTTG
66 TGGTTTG
22157356 ATCATCT
1 ATCATCT
22157363 TCATGCTCAA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
72 76 1.00
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (72 bp):
ATCATCTATTACACATAGTCTATTTCGAAAGTATAAACTCTCATAACCACTTAAACTAAAATCAC
TGGTTTG
Found at i:22161877 original size:45 final size:45
Alignment explanation
Indices: 22161822--22161912 Score: 164
Period size: 45 Copynumber: 2.0 Consensus size: 45
22161812 TCACAATGCT
*
22161822 TTTATTCTTTCACTATTTTTCATTTAGGAATTTTAATTGCAACAA
1 TTTATTCTTTCACTACTTTTCATTTAGGAATTTTAATTGCAACAA
*
22161867 TTTATTCTTTCACTACTTTTCATTTAGGCATTTTAATTGCAACAA
1 TTTATTCTTTCACTACTTTTCATTTAGGAATTTTAATTGCAACAA
22161912 T
1 T
22161913 CCTATACTTA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.27, C:0.15, G:0.07, T:0.51
Consensus pattern (45 bp):
TTTATTCTTTCACTACTTTTCATTTAGGAATTTTAATTGCAACAA
Found at i:22163744 original size:24 final size:24
Alignment explanation
Indices: 22163700--22163745 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
22163690 TTTACTACAA
* * *
22163700 TATTGAGTGGCTTGGCGATAACAT
1 TATTGAGTGGCATGACCATAACAT
22163724 TATTGAGTGGCATGACCATAAC
1 TATTGAGTGGCATGACCATAAC
22163746 GTGCAGTGTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (24 bp):
TATTGAGTGGCATGACCATAACAT
Found at i:22164981 original size:25 final size:25
Alignment explanation
Indices: 22164949--22165014 Score: 82
Period size: 25 Copynumber: 2.6 Consensus size: 25
22164939 ATACATATAC
22164949 ATATAAATTATATAAAA-AATTACAT
1 ATATAAA-TATATAAAATAATTACAT
22164974 ATATAAATAT-TAATAATAATTACATT
1 ATATAAATATATAA-AATAATTACA-T
*
22165000 ATAGAAATATATAAA
1 ATATAAATATATAAA
22165015 TTATGAAAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
23 3 0.08
24 5 0.14
25 14 0.39
26 11 0.31
27 3 0.08
ACGTcount: A:0.59, C:0.03, G:0.02, T:0.36
Consensus pattern (25 bp):
ATATAAATATATAAAATAATTACAT
Found at i:22165031 original size:15 final size:17
Alignment explanation
Indices: 22164988--22165032 Score: 51
Period size: 15 Copynumber: 2.8 Consensus size: 17
22164978 AAATATTAAT
22164988 AATA-ATTACATTATAGA
1 AATATATTA-ATTATAGA
*
22165005 AATATATAAATTAT-GA
1 AATATATTAATTATAGA
22165021 AA-ATATTAATTA
1 AATATATTAATTA
22165033 CATATAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
15 9 0.36
16 4 0.16
17 9 0.36
18 3 0.12
ACGTcount: A:0.56, C:0.02, G:0.04, T:0.38
Consensus pattern (17 bp):
AATATATTAATTATAGA
Found at i:22166862 original size:44 final size:44
Alignment explanation
Indices: 22166798--22167420 Score: 478
Period size: 44 Copynumber: 14.2 Consensus size: 44
22166788 ACGGGAAAGT
* * * *
22166798 AAGATCTGTTATCCTT-GATCTAGTTCATGCCAAT-TCATGAAGAC
1 AAGATCTGCTAT-CTTCGATCTACTTCATACCAATAT-AGGAAGAC
** * * * *
22166842 AAGATCTATTTTCTTCGATCTACTTCACCACCAGTATAGGAAGAT
1 AAGATCTGCTATCTTCGATCTACTTCA-TACCAATATAGGAAGAC
* *
22166887 AAGATCTGCTATCTTCAATCCACTTCACTACCAATATAGGAAGAC
1 AAGATCTGCTATCTTCGATCTACTTCA-TACCAATATAGGAAGAC
* * * * * *
22166932 AGGATTTGCTTTCTTCGATCTACTTCATGCCAATACATGAAGAC
1 AAGATCTGCTATCTTCGATCTACTTCATACCAATATAGGAAGAC
* *
22166976 AAGATCTGCTATCTTCAATCCACTTCGATACCAATATAGGAAGAC
1 AAGATCTGCTATCTTCGATCTACTTC-ATACCAATATAGGAAGAC
* * * * * * **
22167021 AGGATTTGCTTTCTTCGATCTATTTCACACCAATACATAAAGAC
1 AAGATCTGCTATCTTCGATCTACTTCATACCAATATAGGAAGAC
* * *
22167065 AAGATCTGC-ATCTTCGATCCATTTCGCTACCAATATAGGAAGAC
1 AAGATCTGCTATCTTCGATCTACTTC-ATACCAATATAGGAAGAC
* ** * * *
22167109 AGGATCTGCTATCTTCGATCTACTTCACGCTAATACATGAAGAC
1 AAGATCTGCTATCTTCGATCTACTTCATACCAATATAGGAAGAC
* * ** *
22167153 AAGATCTGCTTTCTTTGATCTACTTCGCCACCAATATGGGAAGAC
1 AAGATCTGCTATCTTCGATCTACTTC-ATACCAATATAGGAAGAC
* * * *
22167198 -A-A---G--ATCTTCGATCCACTTCCTACCAATATAGAAAGAT
1 AAGATCTGCTATCTTCGATCTACTTCATACCAATATAGGAAGAC
* *** * *
22167235 AGGATCTGCTATCTTCGATCTACTTCACGTCAATACATGAAGAC
1 AAGATCTGCTATCTTCGATCTACTTCATACCAATATAGGAAGAC
* * * * * *
22167279 AATACCTGCTTTCTTCGATCTACTTTGC-CACCAGTATGGGAAGAC
1 AAGATCTGCTATCTTCGATCTAC-TT-CATACCAATATAGGAAGAC
* * *
22167324 AAGATCTGC-ACCTTCGATCCACTTCCTACCAATATAGGAAGAC
1 AAGATCTGCTATCTTCGATCTACTTCATACCAATATAGGAAGAC
* * ** * *
22167367 AGGACCTGCTATCTTCGATCTACTTCATGGCAATACATGAAGAC
1 AAGATCTGCTATCTTCGATCTACTTCATACCAATATAGGAAGAC
22167411 AAGATCTGCT
1 AAGATCTGCT
22167421 GCAACTTAAA
Statistics
Matches: 446, Mismatches: 115, Indels: 36
0.75 0.19 0.06
Matches are distributed among these distances:
37 14 0.03
38 13 0.03
39 1 0.00
40 1 0.00
42 2 0.00
43 41 0.09
44 222 0.50
45 150 0.34
46 2 0.00
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.30
Consensus pattern (44 bp):
AAGATCTGCTATCTTCGATCTACTTCATACCAATATAGGAAGAC
Found at i:22167000 original size:89 final size:89
Alignment explanation
Indices: 22166836--22167420 Score: 563
Period size: 89 Copynumber: 6.7 Consensus size: 89
22166826 GCCAATTCAT
* ** ** * * * *
22166836 GAAGACAAGATCTATTTTCTTCGATCTACTTCACCACCAGTATAGGAAGATAAGATCTGCTATCT
1 GAAGACAGGATCTGCTTTCTTCGATCTACTTCA-TGCCAATACATGAAGACAAGATCTGCTATCT
*
22166901 TCAATCCACTTCACTACCAATATAG
65 TCGATCCACTTCACTACCAATATAG
*
22166926 GAAGACAGGATTTGCTTTCTTCGATCTACTTCATGCCAATACATGAAGACAAGATCTGCTATCTT
1 GAAGACAGGATCTGCTTTCTTCGATCTACTTCATGCCAATACATGAAGACAAGATCTGCTATCTT
*
22166991 CAATCCACTTCGA-TACCAATATAG
66 CGATCCACTTC-ACTACCAATATAG
* * ** *
22167015 GAAGACAGGATTTGCTTTCTTCGATCTATTTCACACCAATACATAAAGACAAGATCTGC-ATCTT
1 GAAGACAGGATCTGCTTTCTTCGATCTACTTCATGCCAATACATGAAGACAAGATCTGCTATCTT
* *
22167079 CGATCCATTTCGCTACCAATATAG
66 CGATCCACTTCACTACCAATATAG
* * * *
22167103 GAAGACAGGATCTGCTATCTTCGATCTACTTCACGCTAATACATGAAGACAAGATCTGCTTTCTT
1 GAAGACAGGATCTGCTTTCTTCGATCTACTTCATGCCAATACATGAAGACAAGATCTGCTATCTT
* * * * *
22167168 TGATCTACTTCGCCACCAATATGG
66 CGATCCACTTCACTACCAATATAG
* * * * * * *
22167192 GAAGACA--A---G--ATCTTCGATCCACTTCCTACCAATATA-GAAAGATAGGATCTGCTATCT
1 GAAGACAGGATCTGCTTTCTTCGATCTACTTCATGCCAATACATG-AAGACAAGATCTGCTATCT
* * *
22167249 TCGATCTACTTCACGT--CAATACAT
65 TCGATCCACTTCAC-TACCAATATAG
** * *** *
22167273 GAAGACAATACCTGCTTTCTTCGATCTACTT--TGCCACCAGTATGGGAAGACAAGATCTGC-AC
1 GAAGACAGGATCTGCTTTCTTCGATCTACTTCATGCCA--A-TACATGAAGACAAGATCTGCTAT
22167335 CTTCGATCCACTTC-CTACCAATATAG
63 CTTCGATCCACTTCACTACCAATATAG
* * *
22167361 GAAGACAGGACCTGCTATCTTCGATCTACTTCATGGCAATACATGAAGACAAGATCTGCT
1 GAAGACAGGATCTGCTTTCTTCGATCTACTTCATGCCAATACATGAAGACAAGATCTGCT
22167421 GCAACTTAAA
Statistics
Matches: 413, Mismatches: 61, Indels: 44
0.80 0.12 0.08
Matches are distributed among these distances:
81 13 0.03
82 49 0.12
83 1 0.00
84 1 0.00
86 6 0.01
87 19 0.05
88 141 0.34
89 148 0.36
90 35 0.08
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (89 bp):
GAAGACAGGATCTGCTTTCTTCGATCTACTTCATGCCAATACATGAAGACAAGATCTGCTATCTT
CGATCCACTTCACTACCAATATAG
Found at i:22167127 original size:177 final size:176
Alignment explanation
Indices: 22166853--22167420 Score: 597
Period size: 177 Copynumber: 3.2 Consensus size: 176
22166843 AGATCTATTT
* * * * *
22166853 TCTTCGATCTACTTCACCACCAGTATAGGAAGATAAGATCTGCTATCTTCAATCCACTTCACTAC
1 TCTTCGATCTACTTCA-CACCAATACAGAAAGACAAGATCTGCTATCTTCGATCCACTTCACTAC
*
22166918 CAATATAGGAAGACAGGATTTGCTTTCTTCGATCTACTTCATGCCAATACATGAAGACAAGATCT
65 CAATATAGGAAGACAGGATCTGCTTTCTTCGATCTACTTCATGCCAATACATGAAGACAAGATCT
* * *
22166983 GCTATCTTCAATCCACTTCGATACCAATATAGGAAGACAGGATTTGCTT
130 GCTATCTTCGATCCACTTCGCTACCAATATAGGAAGACAGGA--TGCTA
* * * *
22167032 TCTTCGATCTATTTCACACCAATACATAAAGACAAGATCTGC-ATCTTCGATCCATTTCGCTACC
1 TCTTCGATCTACTTCACACCAATACAGAAAGACAAGATCTGCTATCTTCGATCCACTTCACTACC
* * *
22167096 AATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGCTAATACATGAAGACAAGATCTG
66 AATATAGGAAGACAGGATCTGCTTTCTTCGATCTACTTCATGCCAATACATGAAGACAAGATCTG
* * * * *
22167161 CTTTCTTTGATCTACTTCGCCACCAATATGGGAAGACA--A-G--A
131 CTATCTTCGATCCACTTCGCTACCAATATAGGAAGACAGGATGCTA
* * * * *
22167202 TCTTCGATCCACTTC-CTACCAATATAGAAAGATAGGATCTGCTATCTTCGATCTACTTCACGT-
1 TCTTCGATCTACTTCAC-ACCAATACAGAAAGACAAGATCTGCTATCTTCGATCCACTTCAC-TA
* * ** * ***
22167265 -CAATACATGAAGACAATACCTGCTTTCTTCGATCTACTT--TGCCACCAGTATGGGAAGACAAG
64 CCAATATAGGAAGACAGGATCTGCTTTCTTCGATCTACTTCATGCCA--A-TACATGAAGACAAG
*
22167327 ATCTGC-ACCTTCGATCCACTTC-CTACCAATATAGGAAGACAGGACCTGCTA
126 ATCTGCTATCTTCGATCCACTTCGCTACCAATATAGGAAGACAGGA--TGCTA
***
22167378 TCTTCGATCTACTTCATGGCAATACATG-AAGACAAGATCTGCT
1 TCTTCGATCTACTTCACACCAATACA-GAAAGACAAGATCTGCT
22167421 GCAACTTAAA
Statistics
Matches: 320, Mismatches: 54, Indels: 33
0.79 0.13 0.08
Matches are distributed among these distances:
168 3 0.01
169 18 0.06
170 80 0.25
171 33 0.10
172 2 0.01
174 1 0.00
175 1 0.00
176 34 0.11
177 112 0.35
178 21 0.07
179 15 0.05
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (176 bp):
TCTTCGATCTACTTCACACCAATACAGAAAGACAAGATCTGCTATCTTCGATCCACTTCACTACC
AATATAGGAAGACAGGATCTGCTTTCTTCGATCTACTTCATGCCAATACATGAAGACAAGATCTG
CTATCTTCGATCCACTTCGCTACCAATATAGGAAGACAGGATGCTA
Found at i:22167735 original size:88 final size:88
Alignment explanation
Indices: 22167597--22167847 Score: 243
Period size: 88 Copynumber: 2.8 Consensus size: 88
22167587 CACTGTAACT
* * * * * *
22167597 TCAGGGAGATAAGACTCGCTGTGATCTTTGATCTGCTTCGCTACCGGTACAGGAGGGCAAGATCT
1 TCAGGGAGACAAGAC-CG--GTG-TCTTTGATCTACTCCACTACCAGTACAGGAAGGCAAGATCT
* ** *
22167662 GCTATCTTCAGTCTGCTCCACTGCAACC
62 GCTATTTTCAACCTACTCCACTGC-ACC
* * * * * * *
22167690 T-AGGGAGGCAAGACCGGTGTCTTTGGTTTGCTTCACTATCAGTACAAGAAGGCAAGATCTGCTA
1 TCAGGGAGACAAGACCGGTGTCTTTGATCTACTCCACTACCAGTACAGGAAGGCAAGATCTGCTA
**
22167754 TTTTCAACCTACTCCACTGCTGC
66 TTTTCAACCTACTCCACTGCACC
* * * *
22167777 TCAGGGAGACAAGGCCGGTGTCTTTGATCTACTCCGCTGCCGGTACAGGAAGGCAAGATCTGCTA
1 TCAGGGAGACAAGACCGGTGTCTTTGATCTACTCCACTACCAGTACAGGAAGGCAAGATCTGCTA
22167842 TTTTCA
66 TTTTCA
22167848 CTAATCTGTT
Statistics
Matches: 131, Mismatches: 26, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
87 2 0.02
88 112 0.85
89 3 0.02
91 2 0.02
92 11 0.08
93 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.27
Consensus pattern (88 bp):
TCAGGGAGACAAGACCGGTGTCTTTGATCTACTCCACTACCAGTACAGGAAGGCAAGATCTGCTA
TTTTCAACCTACTCCACTGCACC
Found at i:22179682 original size:13 final size:14
Alignment explanation
Indices: 22179663--22179700 Score: 53
Period size: 13 Copynumber: 2.8 Consensus size: 14
22179653 CAATTGCATA
22179663 GAAATAATATAAAC
1 GAAATAATATAAAC
22179677 -AAATAA-ATAAAC
1 GAAATAATATAAAC
22179689 GAAACTAATATA
1 GAAA-TAATATA
22179701 CATAAAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 6 0.29
13 9 0.43
14 3 0.14
15 3 0.14
ACGTcount: A:0.66, C:0.08, G:0.05, T:0.21
Consensus pattern (14 bp):
GAAATAATATAAAC
Found at i:22180156 original size:24 final size:25
Alignment explanation
Indices: 22180127--22180196 Score: 81
Period size: 25 Copynumber: 2.8 Consensus size: 25
22180117 TCTATACATA
*
22180127 TACATATA-AATTATATAAAAAAAT
1 TACATATAGAAATATATAAAAAAAT
* *
22180151 TACATATATAAATAT-TAATAATAAT
1 TACATATAGAAATATATAA-AAAAAT
22180176 TACATTATAGAAATATATAAA
1 TACA-TATAGAAATATATAAA
22180197 TTATGAAAAC
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
24 11 0.28
25 14 0.36
26 11 0.28
27 3 0.08
ACGTcount: A:0.59, C:0.04, G:0.01, T:0.36
Consensus pattern (25 bp):
TACATATAGAAATATATAAAAAAAT
Found at i:22180163 original size:26 final size:25
Alignment explanation
Indices: 22180130--22180196 Score: 82
Period size: 26 Copynumber: 2.6 Consensus size: 25
22180120 ATACATATAC
22180130 ATATAAATTATATAAAAAAATTACAT
1 ATATAAA-TATATAAAAAAATTACAT
*
22180156 ATATAAATAT-TAATAATAATTACATT
1 ATATAAATATATAA-AAAAATTACA-T
*
22180182 ATAGAAATATATAAA
1 ATATAAATATATAAA
22180197 TTATGAAAAC
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
24 3 0.08
25 12 0.33
26 18 0.50
27 3 0.08
ACGTcount: A:0.60, C:0.03, G:0.01, T:0.36
Consensus pattern (25 bp):
ATATAAATATATAAAAAAATTACAT
Found at i:22182574 original size:173 final size:173
Alignment explanation
Indices: 22182279--22182598 Score: 595
Period size: 173 Copynumber: 1.8 Consensus size: 173
22182269 GCTCAATGTC
* *
22182279 GTGTATTTCAGCATAATGGGTAGCTATTGGATTGAAATATTCCGTGCACTAAATCATATATTCCA
1 GTGTACTTCAGCATAATGGGTAGCTATTGGATTGAAATATTCCATGCACTAAATCATATATTCCA
*
22182344 TCAATGCTTCCATGAAACTTATTAGAATTGCCAAATTTTGTAATACCCCAAAAATTACTACAGTA
66 TCAATGCTTCCATGAAACTTATTAGAATTACCAAATTTTGTAATACCCCAAAAATTACTACAGTA
*
22182409 AGCAAGTAAGATAATATCCTTGATGTAGTAAAATAAGGAAATA
131 AGAAAGTAAGATAATATCCTTGATGTAGTAAAATAAGGAAATA
22182452 GTGTACTTCAGCATAATGGGTAGCTATTGGATTGAAATATTCCATGCACTAAATCATATATTCCA
1 GTGTACTTCAGCATAATGGGTAGCTATTGGATTGAAATATTCCATGCACTAAATCATATATTCCA
*
22182517 TCAATGCTTCCATGAAACTTATTAGAATTACCAAATTTTGTAATACCCCGAAAATTACTACAGTA
66 TCAATGCTTCCATGAAACTTATTAGAATTACCAAATTTTGTAATACCCCAAAAATTACTACAGTA
22182582 AGAAAGTAAGATAATAT
131 AGAAAGTAAGATAATAT
22182599 TGAGTTATGT
Statistics
Matches: 142, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
173 142 1.00
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.32
Consensus pattern (173 bp):
GTGTACTTCAGCATAATGGGTAGCTATTGGATTGAAATATTCCATGCACTAAATCATATATTCCA
TCAATGCTTCCATGAAACTTATTAGAATTACCAAATTTTGTAATACCCCAAAAATTACTACAGTA
AGAAAGTAAGATAATATCCTTGATGTAGTAAAATAAGGAAATA
Found at i:22183065 original size:19 final size:19
Alignment explanation
Indices: 22183041--22183085 Score: 81
Period size: 19 Copynumber: 2.3 Consensus size: 19
22183031 AATGATTACT
22183041 ATAAAAGGGAGGAAAGATG
1 ATAAAAGGGAGGAAAGATG
22183060 ATAAAAGGGAGGAAAGATG
1 ATAAAAGGGAGGAAAGATG
22183079 ATGAAAA
1 AT-AAAA
22183086 ATCATCATCT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 21 0.84
20 4 0.16
ACGTcount: A:0.56, C:0.00, G:0.33, T:0.11
Consensus pattern (19 bp):
ATAAAAGGGAGGAAAGATG
Found at i:22185735 original size:5 final size:5
Alignment explanation
Indices: 22185727--22185753 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
22185717 AATATGAAGA
22185727 AAAAT AAAAT AAAAT AAAAT AAAAT AA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AA
22185754 GAAAACTAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:22187735 original size:24 final size:24
Alignment explanation
Indices: 22187703--22187749 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
22187693 AGTATTAGGT
22187703 GAGTCTCTATTTTGACTCCTGCAA
1 GAGTCTCTATTTTGACTCCTGCAA
22187727 GAGTCTCTATTTTGACTCCTGCA
1 GAGTCTCTATTTTGACTCCTGCA
22187750 TCTTAATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.19, C:0.26, G:0.17, T:0.38
Consensus pattern (24 bp):
GAGTCTCTATTTTGACTCCTGCAA
Found at i:22189442 original size:5 final size:5
Alignment explanation
Indices: 22189432--22189463 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
22189422 GATTGATGTA
22189432 TTATT TTATT TTATT TTATT TTATT TTATT TT
1 TTATT TTATT TTATT TTATT TTATT TTATT TT
22189464 TAAATACCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTATT
Found at i:22195157 original size:10 final size:10
Alignment explanation
Indices: 22195142--22195166 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
22195132 TTCTACCTAA
22195142 CCAAAACATG
1 CCAAAACATG
22195152 CCAAAACATG
1 CCAAAACATG
22195162 CCAAA
1 CCAAA
22195167 CAAGTTTACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.52, C:0.32, G:0.08, T:0.08
Consensus pattern (10 bp):
CCAAAACATG
Found at i:22204103 original size:22 final size:20
Alignment explanation
Indices: 22204030--22204104 Score: 71
Period size: 21 Copynumber: 3.5 Consensus size: 20
22204020 ATGTTATGAA
22204030 ATATATGAAAATATTATATAAAT
1 ATATAT-AAAA-ATTATA-AAAT
22204053 A-ATATAAAAATTTATAAAAT
1 ATATATAAAAA-TTATAAAAT
* *
22204073 TTATTTAAAAAGTTATAAATAT
1 ATATATAAAAA-TTATAAA-AT
22204095 ATATATAAAA
1 ATATATAAAA
22204105 CTAAAGAGGT
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
20 5 0.11
21 24 0.55
22 14 0.32
23 1 0.02
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.39
Consensus pattern (20 bp):
ATATATAAAAATTATAAAAT
Found at i:22204630 original size:21 final size:20
Alignment explanation
Indices: 22204580--22204638 Score: 57
Period size: 21 Copynumber: 2.9 Consensus size: 20
22204570 TCGTTCTTGT
* *
22204580 TGGTTTCTCCCT-TGTTTAC
1 TGGTTTCTCCCTCTTTTTGC
*
22204599 TGGTTTGTCCCTCGTTTTTGC
1 TGGTTTCTCCCTC-TTTTTGC
*
22204620 TAGTTTCTCCCCTCTTTTT
1 TGGTTTCT-CCCTCTTTTT
22204639 ACTTTGTTCT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
19 11 0.34
21 16 0.50
22 5 0.16
ACGTcount: A:0.03, C:0.27, G:0.15, T:0.54
Consensus pattern (20 bp):
TGGTTTCTCCCTCTTTTTGC
Found at i:22207152 original size:6 final size:6
Alignment explanation
Indices: 22207141--22207214 Score: 96
Period size: 6 Copynumber: 12.2 Consensus size: 6
22207131 TATTGTTGAT
22207141 AATGGG AATGGG AATGGG AAATGGG AATGGG AATGGG AATGGG AATGGG
1 AATGGG AATGGG AATGGG -AATGGG AATGGG AATGGG AATGGG AATGGG
* * *
22207190 TAT-TG CATGGG AATGGG AAATGGG A
1 AATGGG AATGGG AATGGG -AATGGG A
22207215 GGAGGGCACG
Statistics
Matches: 60, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
5 3 0.05
6 45 0.75
7 12 0.20
ACGTcount: A:0.34, C:0.01, G:0.46, T:0.19
Consensus pattern (6 bp):
AATGGG
Found at i:22207175 original size:25 final size:25
Alignment explanation
Indices: 22207141--22207214 Score: 107
Period size: 25 Copynumber: 3.0 Consensus size: 25
22207131 TATTGTTGAT
22207141 AATGGGAATGGGAATGGGAAATGGG
1 AATGGGAATGGGAATGGGAAATGGG
22207166 AATGGGAATGGGAATGGG-AATGGG
1 AATGGGAATGGGAATGGGAAATGGG
* * *
22207190 TAT-TGCATGGGAATGGGAAATGGG
1 AATGGGAATGGGAATGGGAAATGGG
22207214 A
1 A
22207215 GGAGGGCACG
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
23 12 0.27
24 14 0.32
25 18 0.41
ACGTcount: A:0.34, C:0.01, G:0.46, T:0.19
Consensus pattern (25 bp):
AATGGGAATGGGAATGGGAAATGGG
Found at i:22207388 original size:118 final size:117
Alignment explanation
Indices: 22207170--22207388 Score: 368
Period size: 118 Copynumber: 1.9 Consensus size: 117
22207160 AATGGGAATG
* *
22207170 GGAATGGGAATGGGAATGGGTATTGCATGGGAATGGGAAATGGGAGGAGGGCACGGTAGAAGAGG
1 GGAATGGGAATGGGAATGGGTATTGCATGGGAATAGGAAATGGGAGGAGGGAACGGTAGAAGAGG
22207235 GGAATCGATGGAAGAGGGGAGATGGGAATGGGAAATAGGAGGACGACACGGT
66 GGAATCGATGGAAGAGGGGAGATGGGAATGGGAAATAGGAGGACGACACGGT
* * *
22207287 GGAATGGGAAATTGGAATGGTTATTGCATGGGAATAGGAAATGGGAGGAGGGAACGGTGGAAGAG
1 GGAATGGG-AATGGGAATGGGTATTGCATGGGAATAGGAAATGGGAGGAGGGAACGGTAGAAGAG
22207352 GGGAAT-GATGGAAGAGGGGAGATGGGAATGGAGAAAT
65 GGGAATCGATGGAAGAGGGGAGATGGGAATGG-GAAAT
22207389 TGCATTGTAT
Statistics
Matches: 95, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
117 33 0.35
118 62 0.65
ACGTcount: A:0.34, C:0.04, G:0.47, T:0.15
Consensus pattern (117 bp):
GGAATGGGAATGGGAATGGGTATTGCATGGGAATAGGAAATGGGAGGAGGGAACGGTAGAAGAGG
GGAATCGATGGAAGAGGGGAGATGGGAATGGGAAATAGGAGGACGACACGGT
Found at i:22211296 original size:21 final size:21
Alignment explanation
Indices: 22211272--22211324 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
22211262 CATTATTTCT
* *
22211272 AATCTCACCGCTACAGTACCC
1 AATCTCACCGCTACAATAACC
* *
22211293 AATCTCACCGTTACAATAACT
1 AATCTCACCGCTACAATAACC
22211314 AATCTCACCGC
1 AATCTCACCGC
22211325 CACCGCTGTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.32, C:0.38, G:0.08, T:0.23
Consensus pattern (21 bp):
AATCTCACCGCTACAATAACC
Found at i:22211676 original size:31 final size:30
Alignment explanation
Indices: 22211639--22211719 Score: 117
Period size: 31 Copynumber: 2.7 Consensus size: 30
22211629 ATATAATCTC
*
22211639 TAAAAATCAATTAAGCCCTCTTAAAATAAT
1 TAAAAATCAATTAAGCCCTCGTAAAATAAT
* *
22211669 TAAAAAATCAATTGAGCTCTCGTAAAATAAT
1 T-AAAAATCAATTAAGCCCTCGTAAAATAAT
*
22211700 TAAAAATTAATTAAGCCCTC
1 TAAAAATCAATTAAGCCCTC
22211720 CATTTCAGTA
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
30 17 0.39
31 27 0.61
ACGTcount: A:0.48, C:0.16, G:0.06, T:0.30
Consensus pattern (30 bp):
TAAAAATCAATTAAGCCCTCGTAAAATAAT
Found at i:22213454 original size:40 final size:40
Alignment explanation
Indices: 22213404--22213559 Score: 136
Period size: 40 Copynumber: 3.9 Consensus size: 40
22213394 GAAAAGGTAG
*
22213404 ATATCCGAAATGGATATCAAATGAAAACATT-AAAACAAAT
1 ATATCTGAAATGGATATCAAATGAAAACATTGAAAA-AAAT
* ** **
22213444 ATATCTGAAATGAATATCAAATGAAAAGGTTGAAAAGGAT
1 ATATCTGAAATGGATATCAAATGAAAACATTGAAAAAAAT
* * ** **
22213484 ATATCTGACATGGATATCAATTGAAAAGGTTGAAAATGAT
1 ATATCTGAAATGGATATCAAATGAAAACATTGAAAAAAAT
* * **
22213524 ATATCCGAAACT-GATATGAAATGAAAAGGTTGAAAA
1 ATATCTGAAA-TGGATATCAAATGAAAACATTGAAAA
22213560 GGTTGTTACC
Statistics
Matches: 100, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
40 95 0.95
41 5 0.05
ACGTcount: A:0.49, C:0.08, G:0.17, T:0.25
Consensus pattern (40 bp):
ATATCTGAAATGGATATCAAATGAAAACATTGAAAAAAAT
Found at i:22213502 original size:80 final size:81
Alignment explanation
Indices: 22213392--22213562 Score: 213
Period size: 80 Copynumber: 2.1 Consensus size: 81
22213382 CTCCGAATTC
*
22213392 TTGAAAAGGTAGATATCCGAAATGGATATCAAATGAAAACATT-AAAACAAATATATCTGAAA-T
1 TTGAAAAGGTAGATATCCGAAATGGATATCAAATGAAAACATTGAAAA-AAATATATCCGAAACT
22213455 GAATATCAAATGAAAAGG
65 G-ATATCAAATGAAAAGG
* * * * ** **
22213473 TTGAAAAGG-ATATATCTGACATGGATATCAATTGAAAAGGTTGAAAATGATATATCCGAAACTG
1 TTGAAAAGGTAGATATCCGAAATGGATATCAAATGAAAACATTGAAAAAAATATATCCGAAACTG
*
22213537 ATATGAAATGAAAAGG
66 ATATCAAATGAAAAGG
22213553 TTGAAAAGGT
1 TTGAAAAGGT
22213563 TGTTACCCTA
Statistics
Matches: 77, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
80 62 0.81
81 15 0.19
ACGTcount: A:0.48, C:0.08, G:0.19, T:0.25
Consensus pattern (81 bp):
TTGAAAAGGTAGATATCCGAAATGGATATCAAATGAAAACATTGAAAAAAATATATCCGAAACTG
ATATCAAATGAAAAGG
Found at i:22213739 original size:17 final size:18
Alignment explanation
Indices: 22213706--22213739 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
22213696 AGGAAGAATT
*
22213706 ATGCTTGTAAGGATTAAA
1 ATGCTTGTAACGATTAAA
22213724 ATGCTTG-AACGATTAA
1 ATGCTTGTAACGATTAA
22213740 TCATGAGATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.38, C:0.09, G:0.21, T:0.32
Consensus pattern (18 bp):
ATGCTTGTAACGATTAAA
Found at i:22215729 original size:23 final size:22
Alignment explanation
Indices: 22215697--22215757 Score: 77
Period size: 23 Copynumber: 2.7 Consensus size: 22
22215687 CCAGACCCGT
*
22215697 TTTTTAATTAAAATTAAAATTATA
1 TTTTT-ATTAAAATTAAAACTA-A
22215721 TTTTTATTAAAATTAAAACTAA
1 TTTTTATTAAAATTAAAACTAA
**
22215743 TTGATATTAAAATTA
1 TTTTTATTAAAATTA
22215758 TTGTTATTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
22 14 0.41
23 15 0.44
24 5 0.15
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.48
Consensus pattern (22 bp):
TTTTTATTAAAATTAAAACTAA
Found at i:22215765 original size:15 final size:15
Alignment explanation
Indices: 22215732--22215773 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
22215722 TTTTATTAAA
*
22215732 ATTAAAACTAATTGAT
1 ATTAAAA-TTATTGAT
*
22215748 ATTAAAATTATTGTT
1 ATTAAAATTATTGAT
22215763 ATTAAAATTAT
1 ATTAAAATTAT
22215774 ATCAAATTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
15 17 0.71
16 7 0.29
ACGTcount: A:0.48, C:0.02, G:0.05, T:0.45
Consensus pattern (15 bp):
ATTAAAATTATTGAT
Found at i:22215850 original size:19 final size:19
Alignment explanation
Indices: 22215826--22215876 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 19
22215816 ATCTAATATT
22215826 TTGTTAGTAAAATTATTAA
1 TTGTTAGTAAAATTATTAA
*
22215845 TTG-T--T-AATTGTATTAA
1 TTGTTAGTAAAAT-TATTAA
22215861 TTGTTAGTAAAATTAT
1 TTGTTAGTAAAATTAT
22215877 CAAATTATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 10
0.68 0.05 0.27
Matches are distributed among these distances:
15 3 0.12
16 10 0.40
17 1 0.04
18 1 0.04
19 7 0.28
20 3 0.12
ACGTcount: A:0.37, C:0.00, G:0.12, T:0.51
Consensus pattern (19 bp):
TTGTTAGTAAAATTATTAA
Found at i:22215872 original size:35 final size:34
Alignment explanation
Indices: 22215822--22215978 Score: 119
Period size: 35 Copynumber: 4.6 Consensus size: 34
22215812 TAAAATCTAA
22215822 TATT-TTGTTAGTAAAATTATTAATTGTTAATTG
1 TATTATTGTTAGTAAAATTATTAATTGTTAATTG
* *
22215855 TATTAATTGTTAGTAAAATTATCAAATTATTAATTG
1 TATT-ATTGTTAGTAAAATTAT-TAATTGTTAATTG
* *** * * * *
22215891 --TTACTACCAGTCAAAA-CATT--TTGTAAAATC
1 TATTATTGTTAGT-AAAATTATTAATTGTTAATTG
*
22215921 TAACTTTTTGTTAGTAAAATTATTAATTGTTAATTG
1 T-A-TTATTGTTAGTAAAATTATTAATTGTTAATTG
22215957 TATTAATTGTTAGTAAAATTAT
1 TATT-ATTGTTAGTAAAATTAT
22215979 CAAATTATAT
Statistics
Matches: 90, Mismatches: 22, Indels: 22
0.67 0.16 0.16
Matches are distributed among these distances:
30 6 0.07
33 15 0.17
34 17 0.19
35 33 0.37
36 19 0.21
ACGTcount: A:0.38, C:0.05, G:0.10, T:0.48
Consensus pattern (34 bp):
TATTATTGTTAGTAAAATTATTAATTGTTAATTG
Found at i:22215917 original size:102 final size:102
Alignment explanation
Indices: 22215799--22215986 Score: 360
Period size: 102 Copynumber: 1.8 Consensus size: 102
22215789 TTTGTATCAA
22215799 TCAAAACATTTTGTAAAATCTAA-TATTTTGTTAGTAAAATTATTAATTGTTAATTGTATTAATT
1 TCAAAACATTTTGTAAAATCTAACT-TTTTGTTAGTAAAATTATTAATTGTTAATTGTATTAATT
22215863 GTTAGTAAAATTATCAAATTATTAATTGTTACTACCAG
65 GTTAGTAAAATTATCAAATTATTAATTGTTACTACCAG
22215901 TCAAAACATTTTGTAAAATCTAACTTTTTGTTAGTAAAATTATTAATTGTTAATTGTATTAATTG
1 TCAAAACATTTTGTAAAATCTAACTTTTTGTTAGTAAAATTATTAATTGTTAATTGTATTAATTG
22215966 TTAGTAAAATTATCAAATTAT
66 TTAGTAAAATTATCAAATTAT
22215987 ATCAAATTAT
Statistics
Matches: 85, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
102 84 0.99
103 1 0.01
ACGTcount: A:0.39, C:0.06, G:0.09, T:0.46
Consensus pattern (102 bp):
TCAAAACATTTTGTAAAATCTAACTTTTTGTTAGTAAAATTATTAATTGTTAATTGTATTAATTG
TTAGTAAAATTATCAAATTATTAATTGTTACTACCAG
Found at i:22215952 original size:19 final size:19
Alignment explanation
Indices: 22215928--22216012 Score: 65
Period size: 19 Copynumber: 4.7 Consensus size: 19
22215918 ATCTAACTTT
22215928 TTGTTAGTAAAATTATTAA
1 TTGTTAGTAAAATTATTAA
*
22215947 TTG-T--T-AATTGTATTAA
1 TTGTTAGTAAAAT-TATTAA
*
22215963 TTGTTAGTAAAATTATCAAA
1 TTGTTAGTAAAATTAT-TAA
* * *
22215983 TT-ATA-TCAAATTATTAG
1 TTGTTAGTAAAATTATTAA
22216000 TTGTTAGTAAAAT
1 TTGTTAGTAAAAT
22216013 CTAACATTTT
Statistics
Matches: 49, Mismatches: 9, Indels: 16
0.66 0.12 0.22
Matches are distributed among these distances:
15 3 0.06
16 10 0.20
17 4 0.08
18 11 0.22
19 14 0.29
20 7 0.14
ACGTcount: A:0.40, C:0.02, G:0.11, T:0.47
Consensus pattern (19 bp):
TTGTTAGTAAAATTATTAA
Found at i:22216007 original size:37 final size:35
Alignment explanation
Indices: 22215928--22216012 Score: 100
Period size: 37 Copynumber: 2.4 Consensus size: 35
22215918 ATCTAACTTT
* * *
22215928 TTGTTAGTAAAATTATTAATTGTTAATTGTATTAA
1 TTGTTAGTAAAATTATAAATTATTAAATGTATTAA
*
22215963 TTGTTAGTAAAATTATCAAATTATATCAAAT-TATTAG
1 TTGTTAGTAAAATTAT-AAATTAT-T-AAATGTATTAA
22216000 TTGTTAGTAAAAT
1 TTGTTAGTAAAAT
22216013 CTAACATTTT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
35 16 0.37
36 5 0.12
37 19 0.44
38 3 0.07
ACGTcount: A:0.40, C:0.02, G:0.11, T:0.47
Consensus pattern (35 bp):
TTGTTAGTAAAATTATAAATTATTAAATGTATTAA
Found at i:22224071 original size:38 final size:37
Alignment explanation
Indices: 22224006--22224078 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 37
22223996 TTTTCATAAT
* *
22224006 TTCACTTTTTCACTTTTAATCACTATTCAATTCAAAA
1 TTCACTTTTCCACTTTTAATCAATATTCAATTCAAAA
22224043 TTCACTTTTCCA-TTTTCAAATCAATATTCAATTCAA
1 TTCACTTTTCCACTTTT--AATCAATATTCAATTCAA
22224079 TTCCACACAT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
36 4 0.12
37 11 0.34
38 17 0.53
ACGTcount: A:0.33, C:0.22, G:0.00, T:0.45
Consensus pattern (37 bp):
TTCACTTTTCCACTTTTAATCAATATTCAATTCAAAA
Found at i:22224109 original size:23 final size:22
Alignment explanation
Indices: 22224066--22224109 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
22224056 TTTCAAATCA
22224066 ATATTCAATTCAATTCCACACAT
1 ATATTCAATTCAATT-CACACAT
22224089 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
22224110 TTAATCGTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.39, C:0.23, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACAT
Found at i:22224234 original size:23 final size:23
Alignment explanation
Indices: 22224208--22224260 Score: 97
Period size: 23 Copynumber: 2.3 Consensus size: 23
22224198 ATAAGTGCCA
22224208 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
22224231 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
22224254 CACTGAT
1 CACTGAT
22224261 CAATAACACT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.21
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:22235478 original size:16 final size:15
Alignment explanation
Indices: 22235437--22235481 Score: 63
Period size: 15 Copynumber: 2.9 Consensus size: 15
22235427 AATTCCATAA
*
22235437 AGTACTTAATTTTTC
1 AGTACTTATTTTTTC
*
22235452 AATACTTATTTTTTC
1 AGTACTTATTTTTTC
22235467 AGTACTTGATTTTTT
1 AGTACTT-ATTTTTT
22235482 TTTTTAGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
15 19 0.73
16 7 0.27
ACGTcount: A:0.24, C:0.11, G:0.07, T:0.58
Consensus pattern (15 bp):
AGTACTTATTTTTTC
Found at i:22249753 original size:14 final size:12
Alignment explanation
Indices: 22249734--22249812 Score: 52
Period size: 12 Copynumber: 6.2 Consensus size: 12
22249724 GACCCCTTTT
22249734 ATTAAACATAAACA
1 ATTAAA-ATAAA-A
*
22249748 ATTAAAATTAAA
1 ATTAAAATAAAA
** *
22249760 ATTAAAGGCAAAG
1 ATTAAA-ATAAAA
*
22249773 ATAAAAATGAAAA
1 ATTAAAAT-AAAA
22249786 A-TAAAACTAAAA
1 ATTAAAA-TAAAA
*
22249798 ATAAAAATAAAA
1 ATTAAAATAAAA
22249810 ATT
1 ATT
22249813 TTAAAATTAA
Statistics
Matches: 49, Mismatches: 12, Indels: 10
0.69 0.17 0.14
Matches are distributed among these distances:
12 23 0.47
13 20 0.41
14 6 0.12
ACGTcount: A:0.68, C:0.05, G:0.05, T:0.22
Consensus pattern (12 bp):
ATTAAAATAAAA
Found at i:22249822 original size:6 final size:6
Alignment explanation
Indices: 22249773--22249811 Score: 60
Period size: 6 Copynumber: 6.3 Consensus size: 6
22249763 AAAGGCAAAG
*
22249773 ATAAAA ATGAAAA ATAAAA CTAAAA ATAAAA ATAAAA AT
1 ATAAAA AT-AAAA ATAAAA ATAAAA ATAAAA ATAAAA AT
22249812 TTTAAAATTA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
6 24 0.80
7 6 0.20
ACGTcount: A:0.77, C:0.03, G:0.03, T:0.18
Consensus pattern (6 bp):
ATAAAA
Found at i:22257384 original size:41 final size:41
Alignment explanation
Indices: 22257323--22257481 Score: 160
Period size: 41 Copynumber: 3.9 Consensus size: 41
22257313 TGAAAATAAG
* *
22257323 ATGTTTCAGACTTTACGTCTAGGAGGCTTGATGCCGATGAA
1 ATGTTTCAGACTTTATGTCTAGCAGGCTTGATGCCGATGAA
** *
22257364 ATGTTTCAGACTTTATGTCTAGCAGGCTTGATGTTGGTGAA
1 ATGTTTCAGACTTTATGTCTAGCAGGCTTGATGCCGATGAA
* **
22257405 TTACTTCAGACTTTATGTCTAGCAGGCTTTG-TGCC-AGTGAA
1 ATGTTTCAGACTTTATGTCTAGCAGGC-TTGATGCCGA-TGAA
* * * * * *
22257446 ATGTATCGGGCTTTGTGCCTAGCAGGCTTTATGCCG
1 ATGTTTCAGACTTTATGTCTAGCAGGCTTGATGCCG
22257482 GTGTTTTATA
Statistics
Matches: 94, Mismatches: 20, Indels: 7
0.78 0.17 0.06
Matches are distributed among these distances:
40 2 0.02
41 89 0.95
42 3 0.03
ACGTcount: A:0.21, C:0.18, G:0.26, T:0.35
Consensus pattern (41 bp):
ATGTTTCAGACTTTATGTCTAGCAGGCTTGATGCCGATGAA
Found at i:22258868 original size:28 final size:27
Alignment explanation
Indices: 22258846--22259115 Score: 218
Period size: 28 Copynumber: 9.6 Consensus size: 27
22258836 CCTTTATCAA
22258846 AGGTT-GCCACAAAGGCTTTCTTTATAG
1 AGGTTCGCCACAAAGGCTTTCTTT-TAG
*
22258873 AGGTTCGCCACAAAGGCTTTCTTTATAC
1 AGGTTCGCCACAAAGGCTTTCTTT-TAG
* *
22258901 AGGTTCACCATAAAGGCTTTCCTTTTCAG
1 AGGTTCGCCACAAAGGCTTT-CTTTT-AG
* *
22258930 AGGTTCCCCACAAAGGCTTTCCTTTAAGG
1 AGGTTCGCCACAAAGGCTTT-CTTTTA-G
** * * **
22258959 AGGTTTTCTACAAAGGTTTTCCTTCCAG
1 AGGTTCGCCACAAAGGCTTT-CTTTTAG
22258987 AGGTTCGCCACAAAGGCTTTCCTTTTAG
1 AGGTTCGCCACAAAGGCTTT-CTTTTAG
** * * *
22259015 ATTTTTGCCATAAAGGCTTTCCTTTGCAG
1 AGGTTCGCCACAAAGGCTTT-CTTT-TAG
*
22259044 AGGTTTGCCACAAAGGCTTTCATTTGTAG
1 AGGTTCGCCACAAAGGCTTTC-TTT-TAG
* * * * *
22259073 TGGTTTGCCACAAATGCTTTCCTTTCAA
1 AGGTTCGCCACAAAGGCTTT-CTTTTAG
22259101 AGGTTCGCCACAAAG
1 AGGTTCGCCACAAAG
22259116 ATTTCCATTT
Statistics
Matches: 201, Mismatches: 35, Indels: 13
0.81 0.14 0.05
Matches are distributed among these distances:
27 5 0.02
28 99 0.49
29 96 0.48
30 1 0.00
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.34
Consensus pattern (27 bp):
AGGTTCGCCACAAAGGCTTTCTTTTAG
Found at i:22258947 original size:57 final size:57
Alignment explanation
Indices: 22258830--22259115 Score: 289
Period size: 57 Copynumber: 5.0 Consensus size: 57
22258820 GATTTCCACG
* *
22258830 AGGCTTCCTTTATCAAAGG-TTGCCACAAAGGCTTT-CTTTAT-AGAGGTTCGCCACAA
1 AGGCTTTCTTTAT-AGAGGTTTGCCACAAAGGCTTTCCTTT-TCAGAGGTTCGCCACAA
* ** * *
22258886 AGGCTTTCTTTATACAGGTTCACCATAAAGGCTTTCCTTTTCAGAGGTTCCCCACAA
1 AGGCTTTCTTTATAGAGGTTTGCCACAAAGGCTTTCCTTTTCAGAGGTTCGCCACAA
* * * *
22258943 AGGCTTTCCTTTA-AGGAGGTTTTCTACAAAGGTTTTCC-TTCCAGAGGTTCGCCACAA
1 AGGCTTT-CTTTATA-GAGGTTTGCCACAAAGGCTTTCCTTTTCAGAGGTTCGCCACAA
** * * *
22259000 AGGCTTTCCTTT-TAGATTTTTGCCATAAAGGCTTTCCTTTGCAGAGGTTTGCCACAA
1 AGGCTTT-CTTTATAGAGGTTTGCCACAAAGGCTTTCCTTTTCAGAGGTTCGCCACAA
* * * *
22259057 AGGCTTTCATTTGTAGTGGTTTGCCACAAATGCTTTCC-TTTCAAAGGTTCGCCACAA
1 AGGCTTTC-TTTATAGAGGTTTGCCACAAAGGCTTTCCTTTTCAGAGGTTCGCCACAA
22259114 AG
1 AG
22259116 ATTTCCATTT
Statistics
Matches: 191, Mismatches: 30, Indels: 17
0.80 0.13 0.07
Matches are distributed among these distances:
55 4 0.02
56 44 0.23
57 101 0.53
58 42 0.22
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.34
Consensus pattern (57 bp):
AGGCTTTCTTTATAGAGGTTTGCCACAAAGGCTTTCCTTTTCAGAGGTTCGCCACAA
Found at i:22258995 original size:114 final size:114
Alignment explanation
Indices: 22258849--22259115 Score: 322
Period size: 114 Copynumber: 2.3 Consensus size: 114
22258839 TTATCAAAGG
* **
22258849 TTGCCACAAAGGCTTTCTTTATAGAGGTTCGCCACAAAGGCTTT-CTTTATACAGGTTCACCATA
1 TTGCCACAAAGGCTTTCCTTCCAGAGGTTCGCCACAAAGGCTTTCCTTT-TACAGGTTCACCATA
* *
22258913 AAGGCTTTCCTTTTCAGAGGTTCCCCACAAAGGCTTTCCTTT-AAGGAGGT
65 AAGGCTTTCCTTTGCAGAGGTTCCCCACAAAGGCTTTCATTTGAA-GAGGT
* * * * ** **
22258963 TTTCTACAAAGGTTTTCCTTCCAGAGGTTCGCCACAAAGGCTTTCCTTTTAGATTTTTGCCATAA
1 TTGCCACAAAGGCTTTCCTTCCAGAGGTTCGCCACAAAGGCTTTCCTTTTACAGGTTCACCATAA
** * *
22259028 AGGCTTTCCTTTGCAGAGGTTTGCCACAAAGGCTTTCATTTGTAGTGGT
66 AGGCTTTCCTTTGCAGAGGTTCCCCACAAAGGCTTTCATTTGAAGAGGT
* * *
22259077 TTGCCACAAATGCTTTCCTTTCAAAGGTTCGCCACAAAG
1 TTGCCACAAAGGCTTTCCTTCCAGAGGTTCGCCACAAAG
22259116 ATTTCCATTT
Statistics
Matches: 128, Mismatches: 23, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
114 123 0.96
115 5 0.04
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.34
Consensus pattern (114 bp):
TTGCCACAAAGGCTTTCCTTCCAGAGGTTCGCCACAAAGGCTTTCCTTTTACAGGTTCACCATAA
AGGCTTTCCTTTGCAGAGGTTCCCCACAAAGGCTTTCATTTGAAGAGGT
Found at i:22259601 original size:21 final size:21
Alignment explanation
Indices: 22259576--22259617 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
22259566 CTTAACATAT
22259576 ATCTCAAACATTCACTTATAG
1 ATCTCAAACATTCACTTATAG
22259597 ATCTCAAACATTCACTTATAG
1 ATCTCAAACATTCACTTATAG
22259618 TCATACTCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.24, G:0.05, T:0.33
Consensus pattern (21 bp):
ATCTCAAACATTCACTTATAG
Found at i:22261297 original size:24 final size:24
Alignment explanation
Indices: 22261265--22261323 Score: 73
Period size: 24 Copynumber: 2.5 Consensus size: 24
22261255 GTCCTCGTCT
* *
22261265 TCTTCATCTTCAACTCGACCCTCG
1 TCTTCATCTTCAACTCCACCCCCG
*
22261289 TCTTCATCTTCATCTCCACCCCCG
1 TCTTCATCTTCAACTCCACCCCCG
* *
22261313 TGTTCGTCTTC
1 TCTTCATCTTC
22261324 GTCTCCATCG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.12, C:0.42, G:0.08, T:0.37
Consensus pattern (24 bp):
TCTTCATCTTCAACTCCACCCCCG
Found at i:22263286 original size:16 final size:16
Alignment explanation
Indices: 22263254--22263287 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
22263244 TTTCTATCAA
* *
22263254 AAAAATAAAATATTTT
1 AAAAATAAAAAACTTT
22263270 AAAAATAAAAAACTTT
1 AAAAATAAAAAACTTT
22263286 AA
1 AA
22263288 CTTTAATTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (16 bp):
AAAAATAAAAAACTTT
Found at i:22268575 original size:21 final size:21
Alignment explanation
Indices: 22268551--22268614 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
22268541 GAAGGGTTCG
22268551 TAAGAAGAGATTTTCTTCCTT
1 TAAGAAGAGATTTTCTTCCTT
* ***
22268572 TAAG-A-TGA--TTCTTTAAT
1 TAAGAAGAGATTTTCTTCCTT
*
22268589 TGAGAAGAGATTTTCTTCCTT
1 TAAGAAGAGATTTTCTTCCTT
22268610 TAAGA
1 TAAGA
22268615 TGATTCTTTA
Statistics
Matches: 29, Mismatches: 10, Indels: 8
0.62 0.21 0.17
Matches are distributed among these distances:
17 9 0.31
18 1 0.03
19 4 0.14
20 1 0.03
21 14 0.48
ACGTcount: A:0.31, C:0.11, G:0.16, T:0.42
Consensus pattern (21 bp):
TAAGAAGAGATTTTCTTCCTT
Found at i:22268576 original size:18 final size:19
Alignment explanation
Indices: 22268555--22268619 Score: 55
Period size: 19 Copynumber: 3.5 Consensus size: 19
22268545 GGTTCGTAAG
22268555 AAGA-GATTTTCTTCCTTT
1 AAGATGATTTTCTTCCTTT
* ** *
22268573 AAGATGATTCT-TTAATTGAG
1 AAGATGATTTTCTTCCTT--T
22268593 AAGA-GATTTTCTTCCTTT
1 AAGATGATTTTCTTCCTTT
22268611 AAGATGATT
1 AAGATGATT
22268620 CTTTAATTCT
Statistics
Matches: 34, Mismatches: 8, Indels: 9
0.67 0.16 0.18
Matches are distributed among these distances:
18 12 0.35
19 14 0.41
20 8 0.24
ACGTcount: A:0.29, C:0.11, G:0.15, T:0.45
Consensus pattern (19 bp):
AAGATGATTTTCTTCCTTT
Found at i:22268604 original size:38 final size:38
Alignment explanation
Indices: 22268553--22268627 Score: 150
Period size: 38 Copynumber: 2.0 Consensus size: 38
22268543 AGGGTTCGTA
22268553 AGAAGAGATTTTCTTCCTTTAAGATGATTCTTTAATTG
1 AGAAGAGATTTTCTTCCTTTAAGATGATTCTTTAATTG
22268591 AGAAGAGATTTTCTTCCTTTAAGATGATTCTTTAATT
1 AGAAGAGATTTTCTTCCTTTAAGATGATTCTTTAATT
22268628 CTTTCTTTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.29, C:0.11, G:0.15, T:0.45
Consensus pattern (38 bp):
AGAAGAGATTTTCTTCCTTTAAGATGATTCTTTAATTG
Found at i:22269667 original size:22 final size:23
Alignment explanation
Indices: 22269594--22269734 Score: 81
Period size: 25 Copynumber: 5.9 Consensus size: 23
22269584 TTGTGGTGTA
*
22269594 CTGTAATAGCCTTTGTGCCATATT
1 CTGT-ATAGCCTTTGTGGCATATT
* * **
22269618 CTGTATGATGTCTTTATGGCATCCT
1 CTGTAT-A-GCCTTTGTGGCATATT
22269643 CTG-ATAGCCTTTGTGGCATATT
1 CTGTATAGCCTTTGTGGCATATT
* **
22269665 CTGTATGCTGCCTTTGTGGTGTATT
1 CTGTAT--AGCCTTTGTGGCATATT
*
22269690 CTGAAT-GTTTCCTTTGTGG-AGTATT
1 CTGTATAG---CCTTTGTGGCA-TATT
* *
22269715 CTGTCTAGCCCTTGTGGCAT
1 CTGTATAGCCTTTGTGGCAT
22269735 GCTCTGATAA
Statistics
Matches: 89, Mismatches: 17, Indels: 23
0.69 0.13 0.18
Matches are distributed among these distances:
22 16 0.18
23 14 0.16
24 8 0.09
25 50 0.56
26 1 0.01
ACGTcount: A:0.15, C:0.19, G:0.23, T:0.43
Consensus pattern (23 bp):
CTGTATAGCCTTTGTGGCATATT
Found at i:22269683 original size:25 final size:24
Alignment explanation
Indices: 22269602--22269718 Score: 87
Period size: 25 Copynumber: 4.8 Consensus size: 24
22269592 TACTGTAATA
*
22269602 GCCTTTGTGCCATATTCTGTATGAT
1 GCCTTTGTGGCATATTCTGTATG-T
* * ** *
22269627 GTCTTTATGGCATCCTCTG-AT-A
1 GCCTTTGTGGCATATTCTGTATGT
22269649 GCCTTTGTGGCATATTCTGTATGCT
1 GCCTTTGTGGCATATTCTGTATG-T
** *
22269674 GCCTTTGTGGTGTATTCTGAATGTT
1 GCCTTTGTGGCATATTCTGTATG-T
*
22269699 TCCTTTGTGG-AGTATTCTGT
1 GCCTTTGTGGCA-TATTCTGT
22269719 CTAGCCCTTG
Statistics
Matches: 70, Mismatches: 18, Indels: 8
0.73 0.19 0.08
Matches are distributed among these distances:
22 15 0.21
23 2 0.03
24 2 0.03
25 51 0.73
ACGTcount: A:0.14, C:0.18, G:0.23, T:0.45
Consensus pattern (24 bp):
GCCTTTGTGGCATATTCTGTATGT
Found at i:22269693 original size:47 final size:47
Alignment explanation
Indices: 22269580--22269693 Score: 138
Period size: 47 Copynumber: 2.4 Consensus size: 47
22269570 ATTCTATTTG
* *
22269580 GCCTTTGTGGTGTACTGTAATAGCCTTTGTGCCATATTCTGTATGAT
1 GCCTTTGTGGTGTACTCTGATAGCCTTTGTGCCATATTCTGTATGAT
* * ** * * *
22269627 GTCTTTATGGCATCCTCTGATAGCCTTTGTGGCATATTCTGTATGCT
1 GCCTTTGTGGTGTACTCTGATAGCCTTTGTGCCATATTCTGTATGAT
*
22269674 GCCTTTGTGGTGTATTCTGA
1 GCCTTTGTGGTGTACTCTGA
22269694 ATGTTTCCTT
Statistics
Matches: 52, Mismatches: 15, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
47 52 1.00
ACGTcount: A:0.15, C:0.18, G:0.24, T:0.43
Consensus pattern (47 bp):
GCCTTTGTGGTGTACTCTGATAGCCTTTGTGCCATATTCTGTATGAT
Found at i:22271592 original size:22 final size:21
Alignment explanation
Indices: 22271564--22271606 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
22271554 CATGATGATG
22271564 TCAATGCAGAGCTTTTTAGAAA
1 TCAATGCA-AGCTTTTTAGAAA
**
22271586 TCAATGCAATTTTTTTAGAAA
1 TCAATGCAAGCTTTTTAGAAA
22271607 AAATTCCTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37
Consensus pattern (21 bp):
TCAATGCAAGCTTTTTAGAAA
Found at i:22275985 original size:86 final size:86
Alignment explanation
Indices: 22275840--22276012 Score: 301
Period size: 86 Copynumber: 2.0 Consensus size: 86
22275830 CAAGCAAAAC
* * *
22275840 TAAACAAAATATCGGGTCTACTTGCAGTAAGATCAAGCAATGAGCCAATCATTGGCCTATATAAA
1 TAAACAAAATATAGGGTCCACTTGCAGTAAGATAAAGCAATGAGCCAATCATTGGCCTATATAAA
22275905 TTTGTATCAACACATTTACCT
66 TTTGTATCAACACATTTACCT
* *
22275926 TAAACAAAATATAGGGTCCACTTGCAGTAAGATAAAGTAATGAGCCAATCATTGGCCTATGTAAA
1 TAAACAAAATATAGGGTCCACTTGCAGTAAGATAAAGCAATGAGCCAATCATTGGCCTATATAAA
22275991 TTTGTATCAACACATTTACCT
66 TTTGTATCAACACATTTACCT
22276012 T
1 T
22276013 CTTAGTATTT
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
86 82 1.00
ACGTcount: A:0.38, C:0.18, G:0.14, T:0.29
Consensus pattern (86 bp):
TAAACAAAATATAGGGTCCACTTGCAGTAAGATAAAGCAATGAGCCAATCATTGGCCTATATAAA
TTTGTATCAACACATTTACCT
Found at i:22279891 original size:20 final size:20
Alignment explanation
Indices: 22279866--22279907 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
22279856 TAAGATTTCT
22279866 ACACAAATCTTAATACTCTA
1 ACACAAATCTTAATACTCTA
22279886 ACACAAATCTTAATACTCTA
1 ACACAAATCTTAATACTCTA
22279906 AC
1 AC
22279908 CCTCTCAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.45, C:0.26, G:0.00, T:0.29
Consensus pattern (20 bp):
ACACAAATCTTAATACTCTA
Found at i:22283563 original size:39 final size:39
Alignment explanation
Indices: 22283462--22283597 Score: 132
Period size: 39 Copynumber: 3.4 Consensus size: 39
22283452 GTTTGGATAA
*
22283462 AAAACGCCACTAAAAATTGAGCATTAGCGGCGCTTCTCAT
1 AAAACGCCACTAAAAA-TGAGCATTAGCGGCGCTTCTCAG
* * *
22283502 AAAACGCCGCT-AAGATCAAGCATTAGCGGCGCTT-TCAGG
1 AAAACGCCACTAAAAAT-GAGCATTAGCGGCGCTTCTCA-G
* ** **
22283541 AAAGCGCCACTAAAAATGAGCATTAGCGGCATTTCTTGG
1 AAAACGCCACTAAAAATGAGCATTAGCGGCGCTTCTCAG
*
22283580 AAAAACGCCACAAAAAAT
1 -AAAACGCCACTAAAAAT
22283598 CTAAACCCAA
Statistics
Matches: 77, Mismatches: 14, Indels: 10
0.76 0.14 0.10
Matches are distributed among these distances:
38 4 0.05
39 43 0.56
40 30 0.39
ACGTcount: A:0.38, C:0.24, G:0.20, T:0.19
Consensus pattern (39 bp):
AAAACGCCACTAAAAATGAGCATTAGCGGCGCTTCTCAG
Found at i:22283735 original size:41 final size:41
Alignment explanation
Indices: 22283632--22283823 Score: 280
Period size: 41 Copynumber: 4.7 Consensus size: 41
22283622 ACCTTCTAGG
22283632 GCTTTAGCGGCGTTTTT-AAAAAGCGCCGCTAATGCTCAGA
1 GCTTTAGCGGCGTTTTTAAAAAAGCGCCGCTAATGCTCAGA
* *
22283672 GCTTTA-CGGCGTTTTTAAAAAAGCGTCGCTAATGCTCAAA
1 GCTTTAGCGGCGTTTTTAAAAAAGCGCCGCTAATGCTCAGA
*
22283712 GCTTTAGCGGCGTTTTTAAAAAAGCGTCGCTAATGCTCAGA
1 GCTTTAGCGGCGTTTTTAAAAAAGCGCCGCTAATGCTCAGA
* ** * * *
22283753 GCTTTAGCGGCATTTTCCAAGAAGCGCCGCTAATGCTCGGG
1 GCTTTAGCGGCGTTTTTAAAAAAGCGCCGCTAATGCTCAGA
*
22283794 GCTTTAGCGGCGTTTTTAAAAAAGCACCGC
1 GCTTTAGCGGCGTTTTTAAAAAAGCGCCGC
22283824 AAAAACATTT
Statistics
Matches: 135, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 10 0.07
40 33 0.24
41 92 0.68
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (41 bp):
GCTTTAGCGGCGTTTTTAAAAAAGCGCCGCTAATGCTCAGA
Found at i:22284242 original size:7 final size:7
Alignment explanation
Indices: 22284232--22284276 Score: 54
Period size: 7 Copynumber: 6.3 Consensus size: 7
22284222 ATTTTAAGGT
*
22284232 TTATAGA
1 TTATGGA
22284239 TTATGGAA
1 TTATGG-A
*
22284247 TTAGGGA
1 TTATGGA
22284254 TTATGGA
1 TTATGGA
22284261 TTATGGA
1 TTATGGA
*
22284268 TTAGGGA
1 TTATGGA
22284275 TT
1 TT
22284277 CTGGTTTAAG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
7 27 0.82
8 6 0.18
ACGTcount: A:0.31, C:0.00, G:0.29, T:0.40
Consensus pattern (7 bp):
TTATGGA
Found at i:22284257 original size:22 final size:21
Alignment explanation
Indices: 22284232--22284276 Score: 72
Period size: 22 Copynumber: 2.1 Consensus size: 21
22284222 ATTTTAAGGT
22284232 TTATAGATTATGGAATTAGGGA
1 TTATAGATTATGG-ATTAGGGA
*
22284254 TTATGGATTATGGATTAGGGA
1 TTATAGATTATGGATTAGGGA
22284275 TT
1 TT
22284277 CTGGTTTAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.31, C:0.00, G:0.29, T:0.40
Consensus pattern (21 bp):
TTATAGATTATGGATTAGGGA
Found at i:22284423 original size:81 final size:81
Alignment explanation
Indices: 22284334--22284514 Score: 188
Period size: 81 Copynumber: 2.2 Consensus size: 81
22284324 TAGGGATATA
* * * *
22284334 TTTAGGGTTTATGGATTTAGTG-TCAGGTTAAGGCTTAGGGTTTAGGTTAATTAGTATGTTTTAA
1 TTTAGGGTTTA-GGAGTTAGGGATCAGGATAAGGCTTAGGGTTTAGATTAATTAGTATGTTTTAA
*
22284398 -TCTATATTAAATAAGG
65 TTATATATTAAATAAGG
* * ** * * *
22284414 TTTAGGGGTTAGGGGTTAGGGACTTGGGATAAGGTTTAGGGTTTAGATTAATTAGTGTTTTTTAA
1 TTTAGGGTTTAGGAGTTAGGGA-TCAGGATAAGGCTTAGGGTTTAGATTAATTAGTATGTTTTAA
22284479 TTTATATATTAAATAAGG
65 -TTATATATTAAATAAGG
*
22284497 TTTATGGG-TTAGCAGTTA
1 TTTA-GGGTTTAGGAGTTA
22284515 AGGGTTTGGG
Statistics
Matches: 82, Mismatches: 14, Indels: 7
0.80 0.14 0.07
Matches are distributed among these distances:
79 7 0.09
80 10 0.12
81 35 0.43
83 27 0.33
84 3 0.04
ACGTcount: A:0.27, C:0.03, G:0.27, T:0.43
Consensus pattern (81 bp):
TTTAGGGTTTAGGAGTTAGGGATCAGGATAAGGCTTAGGGTTTAGATTAATTAGTATGTTTTAAT
TATATATTAAATAAGG
Found at i:22288406 original size:24 final size:22
Alignment explanation
Indices: 22288378--22288421 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 22
22288368 AATTTAAAAA
22288378 ATAAAACATAATATAATATTTATC
1 ATAAAA-ATAA-ATAATATTTATC
*
22288402 ATAAAAATAAATATTATTTA
1 ATAAAAATAAATAATATTTA
22288422 ATTAAAATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 9 0.47
23 4 0.21
24 6 0.32
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.39
Consensus pattern (22 bp):
ATAAAAATAAATAATATTTATC
Found at i:22288583 original size:43 final size:43
Alignment explanation
Indices: 22288520--22288625 Score: 185
Period size: 43 Copynumber: 2.5 Consensus size: 43
22288510 GGAAAAGTGC
*
22288520 AGGTCTTGGTCTTTAGCGGCGTTTGTGGGAGAAGCGCCGCTAA
1 AGGTCTTGGTCTTTAGCGGCGTTTGTGAGAGAAGCGCCGCTAA
*
22288563 ATGTCTTGGTCTTTAGCGGCGTTTGTGAGAGAAGCGCCGCTAA
1 AGGTCTTGGTCTTTAGCGGCGTTTGTGAGAGAAGCGCCGCTAA
*
22288606 AGGTCTTGGTTTTTAGCGGC
1 AGGTCTTGGTCTTTAGCGGC
22288626 ATTTTTTCTA
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.16, C:0.18, G:0.35, T:0.31
Consensus pattern (43 bp):
AGGTCTTGGTCTTTAGCGGCGTTTGTGAGAGAAGCGCCGCTAA
Found at i:22289573 original size:43 final size:42
Alignment explanation
Indices: 22289461--22289616 Score: 147
Period size: 44 Copynumber: 3.6 Consensus size: 42
22289451 TTTTTCACAT
* * *
22289461 AAACGCCGCTAAAGAACATGACCTTTAGCGGAG--TTTAAAA
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTTAAC
* * ***
22289501 AGAAGCGTCGCTAAA-AGCCATGTTGTTTAGCGGCGCTTTTGTAAC
1 A-AA-CGCCGCTAAAGA-ACATGACCTTTAGCGGCGCTTTT-TAAC
*
22289546 AAACGCCGCTAAAGAACATGACCTTTAGCGGCACTTTTTATCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTTA--AC
*
22289590 AAACGCCGCTAAACAACATGACCTTTA
1 AAACGCCGCTAAAGAACATGACCTTTA
22289617 ACAGTGATTT
Statistics
Matches: 92, Mismatches: 15, Indels: 14
0.76 0.12 0.12
Matches are distributed among these distances:
40 1 0.01
41 3 0.03
42 24 0.26
43 27 0.29
44 34 0.37
45 3 0.03
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.24
Consensus pattern (42 bp):
AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTTAAC
Found at i:22289601 original size:44 final size:42
Alignment explanation
Indices: 22289461--22289646 Score: 140
Period size: 44 Copynumber: 4.3 Consensus size: 42
22289451 TTTTTCACAT
* * ** *
22289461 AAACGCCGCTAAAGAACATGACCTTTAGCGGAGTTTAAAAAG
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGATTTTTATCAC
* * * *** ** * *
22289503 AAGCGTCGCTAAA-AGCCATGTTGTTTAGCGGCGCTTTTGTAAC
1 AAACGCCGCTAAAGA-ACATGACCTTTAGCGG-ATTTTTATCAC
22289546 AAACGCCGCTAAAGAACATGACCTTTAGCGGCACTTTTTATCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGG-A-TTTTTATCAC
* * *
22289590 AAACGCCGCTAAACAACATGACCTTTAACAGTGATTTTTATCAA
1 AAACGCCGCTAAAGAACATGACCTTTAGC-G-GATTTTTATCAC
*
22289634 AAACGCCCCTAAA
1 AAACGCCGCTAAA
22289647 AGTACCGTTT
Statistics
Matches: 112, Mismatches: 26, Indels: 10
0.76 0.18 0.07
Matches are distributed among these distances:
41 1 0.01
42 23 0.21
43 29 0.26
44 56 0.50
45 2 0.02
46 1 0.01
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.24
Consensus pattern (42 bp):
AAACGCCGCTAAAGAACATGACCTTTAGCGGATTTTTATCAC
Found at i:22289975 original size:21 final size:21
Alignment explanation
Indices: 22289951--22290039 Score: 142
Period size: 21 Copynumber: 4.2 Consensus size: 21
22289941 TTTTGCTATG
22289951 CTCTGCTTCCCTCGCTGCTGC
1 CTCTGCTTCCCTCGCTGCTGC
* *
22289972 CTCTACTTCCCTCACTGCTGC
1 CTCTGCTTCCCTCGCTGCTGC
*
22289993 CTCTGCTTCCCTCGCTACTGC
1 CTCTGCTTCCCTCGCTGCTGC
*
22290014 TTCTGCTTCCCTCGCTGCTGC
1 CTCTGCTTCCCTCGCTGCTGC
22290035 CTCTG
1 CTCTG
22290040 TTTTAAGCTA
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 60 1.00
ACGTcount: A:0.03, C:0.46, G:0.16, T:0.35
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCTGC
Found at i:22295544 original size:9 final size:9
Alignment explanation
Indices: 22295530--22295761 Score: 142
Period size: 9 Copynumber: 26.0 Consensus size: 9
22295520 TAGGTATAAT
22295530 TAAGTTATG
1 TAAGTTATG
22295539 TAAGTTATG
1 TAAGTTATG
* * *
22295548 ATATGATATA
1 -TAAGTTATG
*
22295558 T-ATTTATG
1 TAAGTTATG
22295566 T-A-TTATG
1 TAAGTTATG
22295573 TAAGTTATG
1 TAAGTTATG
22295582 TAAGTTATG
1 TAAGTTATG
*
22295591 TGAGTTATG
1 TAAGTTATG
22295600 TAAGTTATG
1 TAAGTTATG
* * *
22295609 ATATGATATA
1 -TAAGTTATG
*
22295619 T-ATTTATG
1 TAAGTTATG
22295627 T-A-TTATG
1 TAAGTTATG
*
22295634 TAAGTTCTG
1 TAAGTTATG
* *
22295643 TGAGCTATG
1 TAAGTTATG
*
22295652 TAAGTTATT
1 TAAGTTATG
*
22295661 TATTA-TATATT
1 TA--AGT-TATG
*
22295672 TATGTTAT-
1 TAAGTTATG
22295680 TAAGTTATG
1 TAAGTTATG
22295689 TAAGTTATG
1 TAAGTTATG
*
22295698 TGAGTTATG
1 TAAGTTATG
* *
22295707 ATATGATATATA
1 -TAAG-T-TATG
22295719 TAAGTTAT-
1 TAAGTTATG
22295727 TAAGTTATG
1 TAAGTTATG
*
22295736 TATG-TATG
1 TAAGTTATG
*
22295744 TGAGTTATG
1 TAAGTTATG
22295753 TAAGTTATG
1 TAAGTTATG
22295762 ATCTGACATA
Statistics
Matches: 173, Mismatches: 34, Indels: 32
0.72 0.14 0.13
Matches are distributed among these distances:
7 12 0.07
8 33 0.19
9 97 0.56
10 17 0.10
11 11 0.06
12 3 0.02
ACGTcount: A:0.32, C:0.01, G:0.19, T:0.48
Consensus pattern (9 bp):
TAAGTTATG
Found at i:22295572 original size:34 final size:34
Alignment explanation
Indices: 22295534--22295639 Score: 136
Period size: 34 Copynumber: 3.3 Consensus size: 34
22295524 TATAATTAAG
22295534 TTATGTAAGTTATGATATGATATATATTTATGTA
1 TTATGTAAGTTATGATATGATATATATTTATGTA
* * *
22295568 TTATGTAAGTTATG-TAAG-T-TAT-GTGA-G--
1 TTATGTAAGTTATGATATGATATATATTTATGTA
22295595 TTATGTAAGTTATGATATGATATATATTTATGTA
1 TTATGTAAGTTATGATATGATATATATTTATGTA
22295629 TTATGTAAGTT
1 TTATGTAAGTT
22295640 CTGTGAGCTA
Statistics
Matches: 59, Mismatches: 6, Indels: 14
0.75 0.08 0.18
Matches are distributed among these distances:
27 14 0.24
28 3 0.05
29 2 0.03
30 5 0.08
31 5 0.08
32 2 0.03
33 3 0.05
34 25 0.42
ACGTcount: A:0.33, C:0.00, G:0.18, T:0.49
Consensus pattern (34 bp):
TTATGTAAGTTATGATATGATATATATTTATGTA
Found at i:22295627 original size:61 final size:58
Alignment explanation
Indices: 22295532--22295761 Score: 221
Period size: 52 Copynumber: 4.0 Consensus size: 58
22295522 GGTATAATTA
22295532 AGTTATGTAAGTTATGATATGATATATATTTATGTATTATGTAAGTTATGTAAGTTATGTG
1 AGTTATGTAAGTTAT-ATATG-TATATATTTATGT-TTATGTAAGTTATGTAAGTTATGTG
*
22295593 AGTTATGTAAGTTATGATATG-ATATA--TA--TTTATGT-A-TTATGTAAGTTCTGTG
1 AGTTATGTAAGTTAT-ATATGTATATATTTATGTTTATGTAAGTTATGTAAGTTATGTG
* *
22295645 AGCTATGTAAGTTATTTAT-TATATATTTATG-TTAT-TAAGTTATGTAAGTTATGTG
1 AGTTATGTAAGTTATATATGTATATATTTATGTTTATGTAAGTTATGTAAGTTATGTG
* * * *
22295700 AGTTATGATATGATATATATAAGT-TATTAAGTTATGTATGTATGTGAGTTATGTAAGTTATG
1 AGTTATG-TAAG-T-TATATATGTATA-T-ATTTATGT-T-TATGTAAGTTATGTAAGTTATG
22295762 ATCTGACATA
Statistics
Matches: 142, Mismatches: 10, Indels: 31
0.78 0.05 0.17
Matches are distributed among these distances:
51 8 0.06
52 29 0.20
53 4 0.03
54 11 0.08
55 22 0.15
56 3 0.02
57 3 0.02
58 7 0.05
59 7 0.05
60 6 0.04
61 21 0.15
62 1 0.01
63 3 0.02
64 17 0.12
ACGTcount: A:0.32, C:0.01, G:0.19, T:0.48
Consensus pattern (58 bp):
AGTTATGTAAGTTATATATGTATATATTTATGTTTATGTAAGTTATGTAAGTTATGTG
Found at i:22295761 original size:55 final size:55
Alignment explanation
Indices: 22295685--22295788 Score: 163
Period size: 55 Copynumber: 1.9 Consensus size: 55
22295675 GTTATTAAGT
* *
22295685 TATGTAAGTTATGTGAGTTATGATATGATATATATAAGTTATTAAGTTATGTATG
1 TATGTAAGTTATGTAAGTTATGATATGACATATATAAGTTATTAAGTTATGTATG
* * *
22295740 TATGTGAGTTATGTAAGTTATGATCTGACATATATAATTTATTAAGTTA
1 TATGTAAGTTATGTAAGTTATGATATGACATATATAAGTTATTAAGTTA
22295789 AGATCCAAAG
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
55 44 1.00
ACGTcount: A:0.35, C:0.02, G:0.18, T:0.45
Consensus pattern (55 bp):
TATGTAAGTTATGTAAGTTATGATATGACATATATAAGTTATTAAGTTATGTATG
Found at i:22296918 original size:51 final size:49
Alignment explanation
Indices: 22296861--22296960 Score: 130
Period size: 53 Copynumber: 2.0 Consensus size: 49
22296851 AGAAAATGAA
22296861 TAAAATTATAAAAACATAAAAAG-ATATATGAGTATGTATATATATGTGTAT
1 TAAAATTAT-AAAACATAAAAAGTATATATGAGTATGTAT-TA-ATGTGTAT
**
22296912 TAAAATTATAAAGTATAAAAAGTATATATATGAGTATGTATTAATGTGT
1 TAAAATTATAAAACATAAAAAG--TATATATGAGTATGTATTAATGTGT
22296961 TTATGAAGAT
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
50 11 0.25
51 15 0.34
52 2 0.05
53 16 0.36
ACGTcount: A:0.49, C:0.01, G:0.13, T:0.37
Consensus pattern (49 bp):
TAAAATTATAAAACATAAAAAGTATATATGAGTATGTATTAATGTGTAT
Found at i:22296997 original size:12 final size:12
Alignment explanation
Indices: 22296980--22297005 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
22296970 TGAAAATACG
22296980 TATATAGATATA
1 TATATAGATATA
22296992 TATATAGATATA
1 TATATAGATATA
22297004 TA
1 TA
22297006 GATATGTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.08, T:0.42
Consensus pattern (12 bp):
TATATAGATATA
Done.