Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62811768
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 736185 characters in sequence are not A, C, G, or T
File 88 of 211
Found at i:23919912 original size:21 final size:20
Alignment explanation
Indices: 23919886--23919939 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 20
23919876 TTATTTTCAG
*
23919886 CAACTTCTACTTCTTCAGCAA
1 CAACTTCT-CTTCTGCAGCAA
*
23919907 CAACTTCCTCTTCTGCAGCAG
1 CAACTT-CTCTTCTGCAGCAA
23919928 CAACTTC-CTTCT
1 CAACTTCTCTTCT
23919940 CAACAACAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 5 0.17
20 1 0.03
21 22 0.73
22 2 0.07
ACGTcount: A:0.22, C:0.37, G:0.07, T:0.33
Consensus pattern (20 bp):
CAACTTCTCTTCTGCAGCAA
Found at i:23923846 original size:34 final size:34
Alignment explanation
Indices: 23923799--23923988 Score: 152
Period size: 34 Copynumber: 5.6 Consensus size: 34
23923789 TTTGCTATTC
* * **
23923799 TATTTATTTGTTATAAATATATTAATTGCTACCG
1 TATTGATTCGTTATAAGCATATTAATTGCTACCG
* * * **
23923833 CATTGATCCGTTATAAGCATATTATTTGCTATTG
1 TATTGATTCGTTATAAGCATATTAATTGCTACCG
*
23923867 TATTGATTTGTTATAAGCATATTAATTG-TCACCG
1 TATTGATTCGTTATAAGCATATTAATTGCT-ACCG
* * *
23923901 TAATGATTCATTATAAGCATATTATTTGCTACCG
1 TATTGATTCGTTATAAGCATATTAATTGCTACCG
** * * * *
23923935 TATCAAGTT-GTTATAAGGAAATTAATTACTACCA
1 TATTGA-TTCGTTATAAGCATATTAATTGCTACCG
*
23923969 TATTGA-TCTATTATAAGCAT
1 TATTGATTC-GTTATAAGCAT
23923989 GTCATATTGC
Statistics
Matches: 118, Mismatches: 33, Indels: 10
0.73 0.20 0.06
Matches are distributed among these distances:
32 1 0.01
33 1 0.01
34 113 0.96
35 3 0.03
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.43
Consensus pattern (34 bp):
TATTGATTCGTTATAAGCATATTAATTGCTACCG
Found at i:23923889 original size:68 final size:68
Alignment explanation
Indices: 23923789--23923988 Score: 222
Period size: 68 Copynumber: 2.9 Consensus size: 68
23923779 AAGCATGTCT
* * ** * *
23923789 TTTGCTATTCTATTTATTTGTTATAAATATATTAATTGCTACCGCATTGATCCGTTATAAGCATA
1 TTTGCTATTGTATTAATTTGTTATAAGCATATTAATTGCTACCGTATTGATCCATTATAAGCATA
23923854 TTA
66 TTA
* * *
23923857 TTTGCTATTGTATTGATTTGTTATAAGCATATTAATTG-TCACCGTAATGATTCATTATAAGCAT
1 TTTGCTATTGTATTAATTTGTTATAAGCATATTAATTGCT-ACCGTATTGATCCATTATAAGCAT
23923921 ATTA
65 ATTA
** * * * * * * *
23923925 TTTGCTACCGTATCAAGTTGTTATAAGGAAATTAATTACTACCATATTGATCTATTATAAGCAT
1 TTTGCTATTGTATTAATTTGTTATAAGCATATTAATTGCTACCGTATTGATCCATTATAAGCAT
23923989 GTCATATTGC
Statistics
Matches: 110, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
67 1 0.01
68 108 0.98
69 1 0.01
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.44
Consensus pattern (68 bp):
TTTGCTATTGTATTAATTTGTTATAAGCATATTAATTGCTACCGTATTGATCCATTATAAGCATA
TTA
Found at i:23938831 original size:105 final size:105
Alignment explanation
Indices: 23938631--23938830 Score: 375
Period size: 105 Copynumber: 1.9 Consensus size: 105
23938621 GGCAACGTAC
*
23938631 CAAAATAGTTTTGACTTTTAGAACCACTTTGATTATCGAAACTATGATAGTTGATTGACATTAAC
1 CAAAATAGTTTTGACTTTCAGAACCACTTTGATTATCGAAACTATGATAGTTGATTGACATTAAC
23938696 TGACCCTGAATCACCAGGTAATCCAAAAAAAGAAATTAAT
66 TGACCCTGAATCACCAGGTAATCCAAAAAAAGAAATTAAT
*
23938736 CAAAATAGTTTTTACTTTCAGAACCACTTTGATTATCGAAACTATGATAGTTGATTGACATTAAC
1 CAAAATAGTTTTGACTTTCAGAACCACTTTGATTATCGAAACTATGATAGTTGATTGACATTAAC
23938801 TGACCCTG-ATCACCAGGTAATCCAAAAAAA
66 TGACCCTGAATCACCAGGTAATCCAAAAAAA
23938831 ATTTAATCAA
Statistics
Matches: 93, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
104 22 0.24
105 71 0.76
ACGTcount: A:0.39, C:0.17, G:0.13, T:0.30
Consensus pattern (105 bp):
CAAAATAGTTTTGACTTTCAGAACCACTTTGATTATCGAAACTATGATAGTTGATTGACATTAAC
TGACCCTGAATCACCAGGTAATCCAAAAAAAGAAATTAAT
Found at i:23940862 original size:19 final size:18
Alignment explanation
Indices: 23940830--23940869 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
23940820 GTATATATTT
*
23940830 TAAATTTATTTAGGTAAA
1 TAAATTTATATAGGTAAA
*
23940848 TAAATCTTATATAGGTAGA
1 TAAAT-TTATATAGGTAAA
23940867 TAA
1 TAA
23940870 GTTTTATTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.45, C:0.03, G:0.12, T:0.40
Consensus pattern (18 bp):
TAAATTTATATAGGTAAA
Found at i:23940876 original size:19 final size:19
Alignment explanation
Indices: 23940830--23940876 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
23940820 GTATATATTT
*
23940830 TAAA-TTTATTTAGGTAAA
1 TAAATTTTATATAGGTAAA
* *
23940848 TAAATCTTATATAGGTAGA
1 TAAATTTTATATAGGTAAA
*
23940867 TAAGTTTTAT
1 TAAATTTTAT
23940877 TCATATTTTA
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.40, C:0.02, G:0.13, T:0.45
Consensus pattern (19 bp):
TAAATTTTATATAGGTAAA
Found at i:23940981 original size:42 final size:42
Alignment explanation
Indices: 23940900--23940983 Score: 141
Period size: 42 Copynumber: 2.0 Consensus size: 42
23940890 ATATTTTATT
*
23940900 TTATCTTTTAGTAGTTTATTAGAATAAGAAAATTATTTTCCC
1 TTATCTTTTAGTAGTTTATTAAAATAAGAAAATTATTTTCCC
* *
23940942 TTATGTTTTAGTAGTTTATTAAAATAAGGAAATTATTTTCCC
1 TTATCTTTTAGTAGTTTATTAAAATAAGAAAATTATTTTCCC
23940984 AAGTAGGATT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.33, C:0.08, G:0.11, T:0.48
Consensus pattern (42 bp):
TTATCTTTTAGTAGTTTATTAAAATAAGAAAATTATTTTCCC
Found at i:23951333 original size:16 final size:17
Alignment explanation
Indices: 23951296--23951333 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
23951286 ATTAGGAGAC
* *
23951296 CTTTAATTAAAAGTCTT
1 CTTTAATTAAAAATCAT
23951313 CTTTAATTAAAAAT-AT
1 CTTTAATTAAAAATCAT
23951329 CTTTA
1 CTTTA
23951334 TGGTATTACG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 6 0.32
17 13 0.68
ACGTcount: A:0.39, C:0.11, G:0.03, T:0.47
Consensus pattern (17 bp):
CTTTAATTAAAAATCAT
Found at i:23958332 original size:17 final size:17
Alignment explanation
Indices: 23958293--23958329 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
23958283 TTTTGGCTTT
*
23958293 TGGAAAAATGCTTTCAT
1 TGGAAAAATGCTTTCAA
23958310 TGGAAAAATGCTTTTCAA
1 TGGAAAAATGC-TTTCAA
23958328 TG
1 TG
23958330 AAATTACTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.35, C:0.11, G:0.19, T:0.35
Consensus pattern (17 bp):
TGGAAAAATGCTTTCAA
Found at i:23959018 original size:27 final size:28
Alignment explanation
Indices: 23958988--23959044 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 28
23958978 TTCTTTAATC
23958988 TCTTT-CCAACCGCTAC-CTTCTTTTTCT
1 TCTTTCCCAACCGCTACTC-TCTTTTTCT
*
23959015 TCTTTGCCCAGCCGCTACTCTCTTTTTCT
1 TCTTT-CCCAACCGCTACTCTCTTTTTCT
23959044 T
1 T
23959045 TTCTATTAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
27 5 0.19
29 20 0.77
30 1 0.04
ACGTcount: A:0.09, C:0.37, G:0.07, T:0.47
Consensus pattern (28 bp):
TCTTTCCCAACCGCTACTCTCTTTTTCT
Found at i:23961397 original size:8 final size:8
Alignment explanation
Indices: 23961384--23961411 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
23961374 TGATTTTGCA
23961384 TTTTCTTT
1 TTTTCTTT
23961392 TTTTCTTT
1 TTTTCTTT
23961400 TTTTCTTT
1 TTTTCTTT
23961408 TTTT
1 TTTT
23961412 TTGTAGTTGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (8 bp):
TTTTCTTT
Found at i:23961837 original size:16 final size:16
Alignment explanation
Indices: 23961816--23961867 Score: 95
Period size: 16 Copynumber: 3.2 Consensus size: 16
23961806 TTTGGTTCGC
23961816 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
23961832 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
23961848 TGTATTGGAATAGAGG
1 TGTATTGGATTAGAGG
23961864 TGTA
1 TGTA
23961868 ATAGCAAATC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.27, C:0.00, G:0.37, T:0.37
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:23961942 original size:44 final size:45
Alignment explanation
Indices: 23961848--23961942 Score: 129
Period size: 45 Copynumber: 2.1 Consensus size: 45
23961838 GGATTAGAGG
* * *
23961848 TGTATTGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAACAACTGTTTGGTTGAA
* **
23961893 TGTAATGGAATAGAGGCGTAATAGTAAAAC-TGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAACAACTGTTTGGTTGAA
23961937 TGTAAT
1 TGTAAT
23961943 AGAGGTGTAA
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 18 0.41
45 26 0.59
ACGTcount: A:0.34, C:0.05, G:0.27, T:0.34
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCAAAACAACTGTTTGGTTGAA
Found at i:23962125 original size:18 final size:17
Alignment explanation
Indices: 23962104--23962138 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
23962094 TTATTATTTA
*
23962104 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
23962122 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
23962139 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:23962132 original size:28 final size:27
Alignment explanation
Indices: 23962062--23962134 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
23962052 TTTATTATCA
*
23962062 AAAATAAATAATTTAATCATATTTAAAC
1 AAAATATATAATTTAAT-ATATTTAAAC
* * **
23962090 ATAAT-TATTATTTAATATATTTTAATT
1 AAAATATATAATTTAATATA-TTTAAAC
23962117 AAAATATATAATTTAATA
1 AAAATATATAATTTAATA
23962135 AAATTCTTAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
26 3 0.08
27 18 0.50
28 15 0.42
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (27 bp):
AAAATATATAATTTAATATATTTAAAC
Found at i:23962272 original size:18 final size:17
Alignment explanation
Indices: 23962251--23962285 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
23962241 TTATTATTAA
*
23962251 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
23962269 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
23962286 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:23962297 original size:147 final size:149
Alignment explanation
Indices: 23962023--23962297 Score: 509
Period size: 147 Copynumber: 1.9 Consensus size: 149
23962013 ATGATTATTG
*
23962023 TTATTGTTATTTAAATTTTAATAAGATTATTTATTATCAAAAATAAATAATTTAATCATATTTAA
1 TTATTGTTATTTAAATTTTAATAAGATTATTTAATATCAAAAATAAATAATTTAATCATATTTAA
*
23962088 ACATAATTATTATTTAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
66 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
23962153 AGAAATTTGTTTTGGTAAA
131 AGAAATTTGTTTTGGTAAA
*
23962172 TTATT-TTATTTAAATTTTAATAAGATTA-TTAATATCAATAATAAATAATTTAATCATATTTAA
1 TTATTGTTATTTAAATTTTAATAAGATTATTTAATATCAAAAATAAATAATTTAATCATATTTAA
23962235 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
66 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
23962298 ATATTCTTAT
Statistics
Matches: 123, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
147 95 0.77
148 23 0.19
149 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (149 bp):
TTATTGTTATTTAAATTTTAATAAGATTATTTAATATCAAAAATAAATAATTTAATCATATTTAA
ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
AGAAATTTGTTTTGGTAAA
Found at i:23962329 original size:54 final size:54
Alignment explanation
Indices: 23962271--23962449 Score: 128
Period size: 55 Copynumber: 3.1 Consensus size: 54
23962261 ATTAAAATAT
*
23962271 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAACC
1 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAAAC
** * * * * *
23962325 ATAATATATGATACTGTAAAATAT-AAAATAACATAATTATTATTAAATAT-AATATAATTAAAA
1 ATAAT-T-T-A-A---TAAAAT-TCTTAATAA-TTAA-TATTCTT--ATATGAAT-TTACTCAAA
*
23962388 TAT
53 -AC
*
23962391 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATC
1 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAAAC
23962445 ATAAT
1 ATAAT
23962450 ATATGATACT
Statistics
Matches: 91, Mismatches: 18, Indels: 32
0.65 0.13 0.23
Matches are distributed among these distances:
54 10 0.11
55 11 0.12
56 4 0.04
57 7 0.08
58 5 0.05
59 11 0.12
61 11 0.12
62 5 0.05
63 7 0.08
64 4 0.04
65 11 0.12
66 5 0.05
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.41
Consensus pattern (54 bp):
ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAAAC
Found at i:23962392 original size:18 final size:17
Alignment explanation
Indices: 23962371--23962405 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
23962361 TTATTATTAA
23962371 ATATAATATAATTAAAAT
1 ATATAATATAA-TAAAAT
*
23962389 ATATAATTTAATAAAAT
1 ATATAATATAATAAAAT
23962406 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
ATATAATATAATAAAAT
Found at i:23962520 original size:18 final size:17
Alignment explanation
Indices: 23962481--23962512 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
23962471 TTTTAAATAA
23962481 TTAATATTAAATATATT
1 TTAATATTAAATATATT
23962498 TTAAT-TTAAATATAT
1 TTAATATTAAATATAT
23962513 GATTTAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TTAATATTAAATATATT
Found at i:23962537 original size:120 final size:120
Alignment explanation
Indices: 23962234--23962526 Score: 482
Period size: 120 Copynumber: 2.4 Consensus size: 120
23962224 ATCATATTTA
23962234 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
23962299 TATTCTTATATGAATTTACTCAAACCATAATATATGATACTGTAAAATATAAAAT
66 TATTCTTATATGAATTTACTCAAACCATAATATATGATACTATAAAATATAAAAT
* *
23962354 AACATAATTATTATTAAATATAATATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
* *
23962419 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATA-AAATTTT
66 TATTCTTATATGAATTTACTCAAACCATAATATATGATACTATAAAATATAAA--AT
* * *
23962475 AA-ATAATTAATATTAAATATATTTTAATTTAAATATATGATTTAATAAAATT
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATT
23962527 TAAAATAATT
Statistics
Matches: 161, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
119 3 0.02
120 155 0.96
121 3 0.02
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATGAATTTACTCAAACCATAATATATGATACTATAAAATATAAAAT
Found at i:23962637 original size:91 final size:91
Alignment explanation
Indices: 23962542--23962749 Score: 258
Period size: 91 Copynumber: 2.3 Consensus size: 91
23962532 TAATTATAAC
* * * *
23962542 TAATAAATTATATTTTATGAATTTGTATAATTTAAAATAA-TAATTATTACATATAATTTAATAA
1 TAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAA-TATTAAATATAATTTAATAA
*
23962606 TAATATAAAATTTCATAAAATTCTTGA
65 TAATATAAAATTTCATAAAATTCTTAA
* * *
23962633 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAGT
1 TAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
* * * *
23962698 GATATATAATTTCATGAAATTGTTAA
66 AATATAAAATTTCATAAAATTCTTAA
*
23962724 TAATAAAATGT-TCTTATATGAATTTA
1 TAAT-AAAT-TATATTATATGAATTTA
23962750 CTAAAATCAA
Statistics
Matches: 102, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
91 79 0.77
92 22 0.22
93 1 0.01
ACGTcount: A:0.47, C:0.03, G:0.05, T:0.45
Consensus pattern (91 bp):
TAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
AATATAAAATTTCATAAAATTCTTAA
Found at i:23963280 original size:12 final size:12
Alignment explanation
Indices: 23963265--23963294 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
23963255 AATACAAACA
23963265 ACAGAAGCTGCT
1 ACAGAAGCTGCT
23963277 ACAGAAGCTGCT
1 ACAGAAGCTGCT
*
23963289 AAAGAA
1 ACAGAA
23963295 ATTAACCATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.43, C:0.20, G:0.23, T:0.13
Consensus pattern (12 bp):
ACAGAAGCTGCT
Found at i:23963574 original size:14 final size:14
Alignment explanation
Indices: 23963555--23963585 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
23963545 AAAATATTAA
23963555 CAACAAATAGTTCC
1 CAACAAATAGTTCC
23963569 CAACAAATAGTTCC
1 CAACAAATAGTTCC
23963583 CAA
1 CAA
23963586 TTGCCAAGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.45, C:0.29, G:0.06, T:0.19
Consensus pattern (14 bp):
CAACAAATAGTTCC
Found at i:23966202 original size:17 final size:17
Alignment explanation
Indices: 23966177--23966209 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
23966167 ATTTTTGTTT
*
23966177 GTCTGGGATTGATTTTC
1 GTCTAGGATTGATTTTC
23966194 GTCTAGGATTGATTTT
1 GTCTAGGATTGATTTT
23966210 TTTTGTTGGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.09, G:0.27, T:0.48
Consensus pattern (17 bp):
GTCTAGGATTGATTTTC
Found at i:23969157 original size:13 final size:13
Alignment explanation
Indices: 23969141--23969191 Score: 66
Period size: 13 Copynumber: 3.9 Consensus size: 13
23969131 ACACTCAAAT
*
23969141 TTTTCAAAAGCAT
1 TTTTCAAAAGCAC
* *
23969154 TTTTCCACAGCAC
1 TTTTCAAAAGCAC
*
23969167 TTTTCAAAAGTAC
1 TTTTCAAAAGCAC
23969180 TTTTCAAAAGCA
1 TTTTCAAAAGCA
23969192 ATGAAGAACT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 31 1.00
ACGTcount: A:0.35, C:0.22, G:0.08, T:0.35
Consensus pattern (13 bp):
TTTTCAAAAGCAC
Found at i:23982882 original size:25 final size:25
Alignment explanation
Indices: 23982853--23982904 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
23982843 TTCATTTATA
23982853 TTTCACTA-GTCCCGTCTATTTAAGT
1 TTTCAC-ACGTCCCGTCTATTTAAGT
*
23982878 TTTCACACGTCCCGTCTGTTTAAGT
1 TTTCACACGTCCCGTCTATTTAAGT
23982903 TT
1 TT
23982905 ACTGATTCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 1 0.04
25 24 0.96
ACGTcount: A:0.17, C:0.25, G:0.13, T:0.44
Consensus pattern (25 bp):
TTTCACACGTCCCGTCTATTTAAGT
Found at i:23984431 original size:18 final size:18
Alignment explanation
Indices: 23984410--23984563 Score: 85
Period size: 18 Copynumber: 8.9 Consensus size: 18
23984400 ATATTAAGAA
23984410 TTTTATTAAATTATATAT
1 TTTTATTAAATTATATAT
23984428 TTTTATTAAA-T-TATA-
1 TTTTATTAAATTATATAT
* *
23984443 -TTTAAT-AATAAT-TAT
1 TTTTATTAAATTATATAT
* * *
23984458 TTTAAATTATATTATATAG
1 TTT-TATTAAATTATATAT
* * *
23984477 TATTA-TATATTAT-GA-
1 TTTTATTAAATTATATAT
*
23984492 TTTTATTAAATTCATATAA
1 TTTTATTAAATT-ATATAT
*** *
23984511 GAATATTTAATATTA-ATAA
1 TTTTA-TTAA-ATTATATAT
23984530 TTTTATTAAATTATATAT
1 TTTTATTAAATTATATAT
23984548 TTTTATTAAATTATAT
1 TTTTATTAAATTATAT
23984564 TTAATAATAA
Statistics
Matches: 102, Mismatches: 20, Indels: 28
0.68 0.13 0.19
Matches are distributed among these distances:
13 2 0.02
14 7 0.07
15 5 0.05
16 12 0.12
17 17 0.17
18 39 0.38
19 12 0.12
20 5 0.05
21 3 0.03
ACGTcount: A:0.42, C:0.01, G:0.02, T:0.55
Consensus pattern (18 bp):
TTTTATTAAATTATATAT
Found at i:23984444 original size:10 final size:10
Alignment explanation
Indices: 23984408--23984591 Score: 50
Period size: 10 Copynumber: 20.0 Consensus size: 10
23984398 TAATATTAAG
*
23984408 AATTTTATTA
1 AATTATATTA
23984418 AATTATA-T-
1 AATTATATTA
* *
23984426 ATTTTTATTA
1 AATTATATTA
*
23984436 AATTATATTT
1 AATTATATTA
23984446 AA-TA-A-T-
1 AATTATATTA
*
23984452 AATTATTTTA
1 AATTATATTA
23984462 AATTATATTA
1 AATTATATTA
*
23984472 TA-TAGTATT-
1 AATTA-TATTA
23984481 -A-TATATTA
1 AATTATATTA
* *
23984489 TGATTTTATTA
1 -AATTATATTA
23984500 AATTCATA-TA
1 AATT-ATATTA
*
23984510 AGAATAT-TTA
1 A-ATTATATTA
23984520 ATATTA-A-T-
1 A-ATTATATTA
*
23984528 AATTTTATTA
1 AATTATATTA
23984538 AATTATA-T-
1 AATTATATTA
* *
23984546 ATTTTTATTA
1 AATTATATTA
*
23984556 AATTATATTT
1 AATTATATTA
23984566 AA-TA-A-T-
1 AATTATATTA
*
23984572 AATTATGTTA
1 AATTATATTA
23984582 AATTATATTA
1 AATTATATTA
23984592 TATAGTATTA
Statistics
Matches: 126, Mismatches: 24, Indels: 48
0.64 0.12 0.24
Matches are distributed among these distances:
6 4 0.03
7 13 0.10
8 17 0.13
9 14 0.11
10 68 0.54
11 10 0.08
ACGTcount: A:0.43, C:0.01, G:0.02, T:0.54
Consensus pattern (10 bp):
AATTATATTA
Found at i:23984482 original size:120 final size:120
Alignment explanation
Indices: 23984345--23984832 Score: 841
Period size: 120 Copynumber: 4.1 Consensus size: 120
23984335 ATTATTAATC
*
23984345 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
1 TATATTATATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAA
* *
23984410 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAAT
66 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAA
* *
23984465 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAATAA
1 TATATTATATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAA
*
23984530 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAT
66 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAA
*
23984585 TATATTATATAGTATTATATATTATGATTTTAGAAAATTCATATAAGAATATTTAATATTAAGAA
1 TATATTATATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAA
*
23984650 TTTTATTAAATTATATTTTTTTATTAAATTATATTTAATAATAATTATGTTAAAA
66 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAA
* * * *
23984705 TATATTTTATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAA
1 TATATTATATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAA
* *
23984770 TTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAAA
66 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAA
23984825 TATGATTA
1 TAT-ATTA
23984833 AATTATTTAT
Statistics
Matches: 351, Mismatches: 16, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
120 348 0.99
121 3 0.01
ACGTcount: A:0.44, C:0.01, G:0.05, T:0.51
Consensus pattern (120 bp):
TATATTATATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAA
TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAA
Found at i:23984671 original size:18 final size:18
Alignment explanation
Indices: 23984650--23984685 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
23984640 ATATTAAGAA
23984650 TTTTATTAAATTATATTT
1 TTTTATTAAATTATATTT
23984668 TTTTATTAAATTATATTT
1 TTTTATTAAATTATATTT
23984686 AATAATAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTTATTAAATTATATTT
Found at i:23984797 original size:18 final size:17
Alignment explanation
Indices: 23984769--23984803 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
23984759 ATTATTAAGA
*
23984769 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
23984786 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
23984804 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:23985043 original size:45 final size:44
Alignment explanation
Indices: 23984962--23985056 Score: 129
Period size: 45 Copynumber: 2.1 Consensus size: 44
23984952 ATTACACCTT
* *
23984962 CATTCCATTCAACCAAACACAAGAATACTATTACGCCTCTATTC
1 CATTACATTCAACCAAACACAAGAATACTATTACGCCTCTAATC
* *
23985006 CATTACATTCAACCAAATA-ATTGAATTACTATTACGCCTCTAATC
1 CATTACATTCAACCAAACACA-AGAA-TACTATTACGCCTCTAATC
23985051 CATTAC
1 CATTAC
23985057 GCCTCTATTC
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
43 1 0.02
44 20 0.44
45 24 0.53
ACGTcount: A:0.37, C:0.28, G:0.04, T:0.31
Consensus pattern (44 bp):
CATTACATTCAACCAAACACAAGAATACTATTACGCCTCTAATC
Found at i:23985057 original size:16 final size:16
Alignment explanation
Indices: 23985036--23985072 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
23985026 TTGAATTACT
23985036 ATTACGCCTCTAATCC
1 ATTACGCCTCTAATCC
*
23985052 ATTACGCCTCTATTCC
1 ATTACGCCTCTAATCC
23985068 ATTAC
1 ATTAC
23985073 ATTCAACCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.24, C:0.35, G:0.05, T:0.35
Consensus pattern (16 bp):
ATTACGCCTCTAATCC
Found at i:23985118 original size:16 final size:16
Alignment explanation
Indices: 23985097--23985132 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
23985087 TTGAATTGCT
23985097 ATTACGCCTCTAATCC
1 ATTACGCCTCTAATCC
*
23985113 ATTACGCCTCTATTCC
1 ATTACGCCTCTAATCC
23985129 ATTA
1 ATTA
23985133 TAACGAACCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.25, C:0.33, G:0.06, T:0.36
Consensus pattern (16 bp):
ATTACGCCTCTAATCC
Found at i:23985145 original size:61 final size:61
Alignment explanation
Indices: 23984991--23985132 Score: 266
Period size: 61 Copynumber: 2.3 Consensus size: 61
23984981 CAAGAATACT
*
23984991 ATTACGCCTCTATTCCATTACATTCAACCAAATAATTGAATTACTATTACGCCTCTAATCC
1 ATTACGCCTCTATTCCATTACATTCAACCAAACAATTGAATTACTATTACGCCTCTAATCC
*
23985052 ATTACGCCTCTATTCCATTACATTCAACCAAACAATTGAATTGCTATTACGCCTCTAATCC
1 ATTACGCCTCTATTCCATTACATTCAACCAAACAATTGAATTACTATTACGCCTCTAATCC
23985113 ATTACGCCTCTATTCCATTA
1 ATTACGCCTCTATTCCATTA
23985133 TAACGAACCA
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 79 1.00
ACGTcount: A:0.31, C:0.29, G:0.06, T:0.35
Consensus pattern (61 bp):
ATTACGCCTCTATTCCATTACATTCAACCAAACAATTGAATTACTATTACGCCTCTAATCC
Found at i:23987571 original size:9 final size:9
Alignment explanation
Indices: 23987557--23987593 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
23987547 TATAGTTTAA
23987557 TATTCGAAT
1 TATTCGAAT
23987566 TATTCGAAT
1 TATTCGAAT
*
23987575 TATTCGAGT
1 TATTCGAAT
23987584 TATTCGAAT
1 TATTCGAAT
23987593 T
1 T
23987594 CAAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:23996471 original size:21 final size:21
Alignment explanation
Indices: 23996423--23996505 Score: 98
Period size: 21 Copynumber: 4.0 Consensus size: 21
23996413 CGAATAAGTC
*
23996423 AACAGAAGCTCG-AAG-GCTA
1 AACAGAAGCTCGTAAGAGCTG
* *
23996442 AACAAAAGCTTGTAAGAGCTG
1 AACAGAAGCTCGTAAGAGCTG
* *
23996463 AACAGAAGCTCATAAGAGCTT
1 AACAGAAGCTCGTAAGAGCTG
*
23996484 AACAGAAGCTTGTAAGAGCTG
1 AACAGAAGCTCGTAAGAGCTG
23996505 A
1 A
23996506 TCCATCCAAT
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
19 10 0.19
20 3 0.06
21 39 0.75
ACGTcount: A:0.42, C:0.17, G:0.24, T:0.17
Consensus pattern (21 bp):
AACAGAAGCTCGTAAGAGCTG
Found at i:23996499 original size:42 final size:40
Alignment explanation
Indices: 23996423--23996505 Score: 121
Period size: 42 Copynumber: 2.0 Consensus size: 40
23996413 CGAATAAGTC
23996423 AACAGAAGCTCGAAGGCTAAACAAAAGCTTGTAAGAGCTG
1 AACAGAAGCTCGAAGGCTAAACAAAAGCTTGTAAGAGCTG
* * *
23996463 AACAGAAGCTCATAAGAGCTTAACAGAAGCTTGTAAGAGCTG
1 AACAGAAGCTC-GAAG-GCTAAACAAAAGCTTGTAAGAGCTG
23996505 A
1 A
23996506 TCCATCCAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
40 11 0.29
41 3 0.08
42 24 0.63
ACGTcount: A:0.42, C:0.17, G:0.24, T:0.17
Consensus pattern (40 bp):
AACAGAAGCTCGAAGGCTAAACAAAAGCTTGTAAGAGCTG
Found at i:24002295 original size:35 final size:35
Alignment explanation
Indices: 24002247--24002330 Score: 116
Period size: 35 Copynumber: 2.4 Consensus size: 35
24002237 CTATGTTTGG
*
24002247 CGTGTTTCGGTTGGACTAGCTCTTATGAGCATTGA
1 CGTGTTTCGGTTGGACTAGCTCTTATGAGCATCGA
* *
24002282 CGTGTTTCTGTTGGATTAGCTCTTATGAGCATCGA
1 CGTGTTTCGGTTGGACTAGCTCTTATGAGCATCGA
*
24002317 CTTGTTAT-GGTTGG
1 CGTGTT-TCGGTTGG
24002331 GCTGACAATG
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
35 42 0.98
36 1 0.02
ACGTcount: A:0.15, C:0.15, G:0.29, T:0.40
Consensus pattern (35 bp):
CGTGTTTCGGTTGGACTAGCTCTTATGAGCATCGA
Found at i:24010588 original size:10 final size:10
Alignment explanation
Indices: 24010550--24010590 Score: 50
Period size: 9 Copynumber: 4.2 Consensus size: 10
24010540 CCTACAGCCC
24010550 AAATTTTTC-
1 AAATTTTTCT
24010559 AAATTTTTCCT
1 AAATTTTT-CT
24010570 AAA-TTTTCT
1 AAATTTTTCT
*
24010579 AAATATTTCT
1 AAATTTTTCT
24010589 AA
1 AA
24010591 TTTAGTCCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
9 13 0.46
10 12 0.43
11 3 0.11
ACGTcount: A:0.37, C:0.12, G:0.00, T:0.51
Consensus pattern (10 bp):
AAATTTTTCT
Found at i:24016880 original size:125 final size:124
Alignment explanation
Indices: 24016686--24017068 Score: 493
Period size: 125 Copynumber: 3.1 Consensus size: 124
24016676 TTTTTTTGTT
* * * *
24016686 CAGTAGTTTCTAAAAAATAAGTTTGAGAAGATGATTCT-AAAAATATAGTGTCAAAAATGCTTCA
1 CAGTAGTTTCTAAAAAATAATTTTGAGAAGACGGTTCTGAAAAA-ATAGTGTCAAAAACGCTTCA
* * * * *
24016750 AGTAGGATGCACTGTCAGCAAGAGTACTAAAAAAAACTCTCACGTGGACACTTTTTTTCTA
65 AGTAGGATGCACTGTCAGCAAAAGTACT-AAAAAAGCTCCCACGTGGACGCTCTTTTTCTA
*
24016811 CAGTAGTTTCTAAAAAAATAATTTTAAGAAGACGGTTCTGAAAAAATAGTGT-AAAAACGCTT-A
1 CAGTAGTTTCT-AAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAAAACGCTTCA
* * ***
24016874 ATGTAGGATGCACTGTTAGCAAAAGTACTGAAAAAGCTCCCACAAAGACGCTCTTTTTCTA
65 A-GTAGGATGCACTGTCAGCAAAAGTACTAAAAAAGCTCCCACGTGGACGCTCTTTTTCTA
* * *
24016935 CAATAGTTTCTGAAAAAATAGTTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAAAACGTTTCA
1 CAGTAGTTTCT-AAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAAAACGCTTCA
* * * *
24017000 AGCAAGATGCACTATCAGCAAAAGTACTGAAAAAAGTTCCCACGTGGACGCTCTTTTTCTA
65 AGTAGGATGCACTGTCAGCAAAAGTACT-AAAAAAGCTCCCACGTGGACGCTCTTTTTCTA
24017061 CAGTAGTT
1 CAGTAGTT
24017069 CCTGCTTGGC
Statistics
Matches: 222, Mismatches: 30, Indels: 11
0.84 0.11 0.04
Matches are distributed among these distances:
124 74 0.33
125 77 0.35
126 66 0.30
127 5 0.02
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.28
Consensus pattern (124 bp):
CAGTAGTTTCTAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAAAACGCTTCAA
GTAGGATGCACTGTCAGCAAAAGTACTAAAAAAGCTCCCACGTGGACGCTCTTTTTCTA
Found at i:24020621 original size:18 final size:18
Alignment explanation
Indices: 24020600--24020635 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
24020590 AAAAGGAAAT
**
24020600 ATATAAGGGTTAGGATAC
1 ATATAAGGACTAGGATAC
24020618 ATATAAGGACTAGGATAC
1 ATATAAGGACTAGGATAC
24020636 GTATCTGGCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.42, C:0.08, G:0.25, T:0.25
Consensus pattern (18 bp):
ATATAAGGACTAGGATAC
Found at i:24022183 original size:32 final size:32
Alignment explanation
Indices: 24022142--24022203 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
24022132 CCTCGGCCTC
*
24022142 ACACGAAAACATGACACTGACTGAATTGATTG
1 ACACGAAAACATGACACTGACTGAAGTGATTG
24022174 ACACGAAAACATGACACTGACTGAAGTGAT
1 ACACGAAAACATGACACTGACTGAAGTGAT
24022204 AGATAGAACC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.19
Consensus pattern (32 bp):
ACACGAAAACATGACACTGACTGAAGTGATTG
Found at i:24027143 original size:61 final size:61
Alignment explanation
Indices: 24027029--24027180 Score: 155
Period size: 61 Copynumber: 2.5 Consensus size: 61
24027019 TAAAAGTGAT
* * * * * *
24027029 GCCTTTGTGGATGTTCTATGTTAAATGTGAGCCATAGTGGTTGGATATGTTATACGTGAAA
1 GCCTTTGTGGATGTTCTCTGTTACATGTGAGCCATAGTGGCTGAACATATTATACGTGAAA
* * * *
24027090 GCCTTTGTGGATGTTCTCTGTTACATGTGAGCCCTAAG-GGCTGAACCTATTATATGTGGAA
1 GCCTTTGTGGATGTTCTCTGTTACATGTGAGCCAT-AGTGGCTGAACATATTATACGTGAAA
* * * *
24027151 GCTTTTGTGGCTATTCTCTATTACA-GTGAG
1 GCCTTTGTGGATGTTCTCTGTTACATGTGAG
24027181 TCTTTGTGGC
Statistics
Matches: 76, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
60 5 0.07
61 69 0.91
62 2 0.03
ACGTcount: A:0.22, C:0.14, G:0.26, T:0.38
Consensus pattern (61 bp):
GCCTTTGTGGATGTTCTCTGTTACATGTGAGCCATAGTGGCTGAACATATTATACGTGAAA
Found at i:24029463 original size:10 final size:10
Alignment explanation
Indices: 24029444--24029474 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
24029434 CTAAATTTTA
*
24029444 TTTATTTTAT
1 TTTATGTTAT
24029454 TTTATGTTAT
1 TTTATGTTAT
24029464 TTTATGTTAT
1 TTTATGTTAT
24029474 T
1 T
24029475 ATTCTAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.19, C:0.00, G:0.06, T:0.74
Consensus pattern (10 bp):
TTTATGTTAT
Found at i:24029465 original size:15 final size:14
Alignment explanation
Indices: 24029438--24029474 Score: 56
Period size: 15 Copynumber: 2.6 Consensus size: 14
24029428 TATCTCCTAA
24029438 ATTTTATTTATTTT
1 ATTTTATTTATTTT
24029452 ATTTTATGTTATTTT
1 ATTTTAT-TTATTTT
*
24029467 ATGTTATT
1 ATTTTATT
24029475 ATTCTAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 8 0.38
15 13 0.62
ACGTcount: A:0.22, C:0.00, G:0.05, T:0.73
Consensus pattern (14 bp):
ATTTTATTTATTTT
Found at i:24029917 original size:36 final size:36
Alignment explanation
Indices: 24029870--24029940 Score: 142
Period size: 36 Copynumber: 2.0 Consensus size: 36
24029860 GGTTTAGTGT
24029870 ATGACTTGCAGTAGGGGTACACCTATTGTAGCAACA
1 ATGACTTGCAGTAGGGGTACACCTATTGTAGCAACA
24029906 ATGACTTGCAGTAGGGGTACACCTATTGTAGCAAC
1 ATGACTTGCAGTAGGGGTACACCTATTGTAGCAAC
24029941 CACAGATATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (36 bp):
ATGACTTGCAGTAGGGGTACACCTATTGTAGCAACA
Found at i:24032093 original size:248 final size:248
Alignment explanation
Indices: 24031655--24032400 Score: 1474
Period size: 248 Copynumber: 3.0 Consensus size: 248
24031645 GTAAGAATAT
24031655 TAAGGTAGGCAAAAAAGTTAACTCAAGTGCTTCTTGTAATGTGATTATTTCGAGACAGGTACCTC
1 TAAGGTAGGCAAAAAAGTTAACTCAAGTGCTTCTTGTAATGTGATTATTTCGAGACAGGTACCTC
24031720 GAAAACTGAAAGACCCGAGGAGCTTTACTATTCCCATAGATATAGAAAACATCTATTTAAATAGA
66 GAAAACTGAAAGACCCGAGGAGCTTTACTATTCCCATAGATATAGAAAACATCTATTTAAATAGA
*
24031785 CCTCTATGTGATTTAGTAGCTAGTATTAATTTAATGCTTCTATCAATTTTTGAAAAACTCGAGCT
131 CCTCTATGTGATTTAGTAGCTAGTATTAATTTAATGCCTCTATCAATTTTTGAAAAACTCGAGCT
24031850 AGGGGATCTTAGAACTACTCAAATAACATTACAGTTGGCTGACAGGTCTTTAG
196 AGGGGATCTTAGAACTACTCAAATAACATTACAGTTGGCTGACAGGTCTTTAG
24031903 TAAGGTAGGCAAAAAAGTTAACTCAAGTGCTTCTTGTAATGTGATTATTTCGAGACAGGTACCTC
1 TAAGGTAGGCAAAAAAGTTAACTCAAGTGCTTCTTGTAATGTGATTATTTCGAGACAGGTACCTC
24031968 GAAAACTGAAAGACCCGAGGAGCTTTACTATTCCCATAGATATAGAAAACATCTATTTAAATAGA
66 GAAAACTGAAAGACCCGAGGAGCTTTACTATTCCCATAGATATAGAAAACATCTATTTAAATAGA
24032033 CCTCTATGTGATTTAGTAGCTAGTATTAATTTAATGCCTCTATCAATTTTTGAAAAACTCGAGCT
131 CCTCTATGTGATTTAGTAGCTAGTATTAATTTAATGCCTCTATCAATTTTTGAAAAACTCGAGCT
24032098 AGGGGATCTTAGAACTACTCAAATAACATTACAGTTGGCTGACAGGTCTTTAG
196 AGGGGATCTTAGAACTACTCAAATAACATTACAGTTGGCTGACAGGTCTTTAG
*
24032151 TAAGGTAGGCAAAAAAGTTAACTCAAGTGCTTCTTGTAATGTGATTATTTTGAGACAGGTACCTC
1 TAAGGTAGGCAAAAAAGTTAACTCAAGTGCTTCTTGTAATGTGATTATTTCGAGACAGGTACCTC
24032216 GAAAACTGAAAGACCCGAGGAGCTTTACTATTCCCATAGATATAGAAAACATCTATTTAAATAGA
66 GAAAACTGAAAGACCCGAGGAGCTTTACTATTCCCATAGATATAGAAAACATCTATTTAAATAGA
24032281 CCTCTATGTGATTTAGTAGCTAGTATTAATTTAATGCCTCTATCAATTTTTGAAAAACTCGAGCT
131 CCTCTATGTGATTTAGTAGCTAGTATTAATTTAATGCCTCTATCAATTTTTGAAAAACTCGAGCT
24032346 AGGGGATCTTAGAACTACTCAAATAACATTACAGTTGGCTGACAGGTCTTTAG
196 AGGGGATCTTAGAACTACTCAAATAACATTACAGTTGGCTGACAGGTCTTTAG
24032399 TA
1 TA
24032401 CATCTGAAAG
Statistics
Matches: 496, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
248 496 1.00
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.31
Consensus pattern (248 bp):
TAAGGTAGGCAAAAAAGTTAACTCAAGTGCTTCTTGTAATGTGATTATTTCGAGACAGGTACCTC
GAAAACTGAAAGACCCGAGGAGCTTTACTATTCCCATAGATATAGAAAACATCTATTTAAATAGA
CCTCTATGTGATTTAGTAGCTAGTATTAATTTAATGCCTCTATCAATTTTTGAAAAACTCGAGCT
AGGGGATCTTAGAACTACTCAAATAACATTACAGTTGGCTGACAGGTCTTTAG
Found at i:24033525 original size:10 final size:10
Alignment explanation
Indices: 24033510--24033538 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
24033500 AACATATATA
24033510 AATCACATTT
1 AATCACATTT
24033520 AATCACATTT
1 AATCACATTT
24033530 AATCACATT
1 AATCACATT
24033539 CAGTCATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.41, C:0.21, G:0.00, T:0.38
Consensus pattern (10 bp):
AATCACATTT
Found at i:24046302 original size:24 final size:24
Alignment explanation
Indices: 24046257--24046307 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
24046247 CAGCTCGTAA
** *
24046257 GAGCATCCCGCTATTAGTTCTCAT
1 GAGCATCCCAATATTAGCTCTCAT
* *
24046281 GAGCATCCCAATATTTGCTCTCTT
1 GAGCATCCCAATATTAGCTCTCAT
24046305 GAG
1 GAG
24046308 TTACCCGATA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.22, C:0.27, G:0.18, T:0.33
Consensus pattern (24 bp):
GAGCATCCCAATATTAGCTCTCAT
Found at i:24046399 original size:25 final size:25
Alignment explanation
Indices: 24046370--24046436 Score: 66
Period size: 25 Copynumber: 2.7 Consensus size: 25
24046360 CTTCCCAACT
24046370 AATGGCTCTCTAGAGCTT-CTCGATA
1 AATGGCTCTCTAGAGCTTCCT-GATA
* *
24046395 TATGGCTCGC-ACGAGCTTCCTGATA
1 AATGGCTCTCTA-GAGCTTCCTGATA
* *
24046420 AATGACTCTCTGGAGCT
1 AATGGCTCTCTAGAGCT
24046437 ACCCGTTATT
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
24 1 0.03
25 30 0.91
26 2 0.06
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.30
Consensus pattern (25 bp):
AATGGCTCTCTAGAGCTTCCTGATA
Found at i:24051587 original size:27 final size:27
Alignment explanation
Indices: 24051547--24051855 Score: 314
Period size: 27 Copynumber: 11.4 Consensus size: 27
24051537 TGCGATTCGT
* * *
24051547 GGGTAAAATAACCGATATACCCCGGAA
1 GGGTAAAATGACCGAAATACCCCCGAA
* * *
24051574 GTGTAAAATGACCGAATTACCCCCAAA
1 GGGTAAAATGACCGAAATACCCCCGAA
*
24051601 GGGTAAAATGACCGAAATACCCTCGAA
1 GGGTAAAATGACCGAAATACCCCCGAA
* ** *
24051628 AGGTAAAATGGTCGAATTACCCCCGAA
1 GGGTAAAATGACCGAAATACCCCCGAA
* *
24051655 GGGTAAAATGACCGAGATACCCCCGAT
1 GGGTAAAATGACCGAAATACCCCCGAA
* * ** *
24051682 GGGTAAAATGACTGAAATAACCTTGAT
1 GGGTAAAATGACCGAAATACCCCCGAA
* * * **
24051709 GGATAAAATAACCGAAATACTCTTGAA
1 GGGTAAAATGACCGAAATACCCCCGAA
** * *
24051736 GGGTAAAATGATTGAAATACCCGCGAT
1 GGGTAAAATGACCGAAATACCCCCGAA
*
24051763 GGGTAAAATGATC-AAATTACCCCCGAA
1 GGGTAAAATGACCGAAA-TACCCCCGAA
* * *
24051790 GGGTAAAATGATCTAAATACCCCTGAA
1 GGGTAAAATGACCGAAATACCCCCGAA
24051817 GGGTAAAATGACCGAAATACCCCCGAA
1 GGGTAAAATGACCGAAATACCCCCGAA
*
24051844 GGGTAAAGTGAC
1 GGGTAAAATGAC
24051856 TGGAATAACC
Statistics
Matches: 232, Mismatches: 48, Indels: 4
0.82 0.17 0.01
Matches are distributed among these distances:
26 3 0.01
27 226 0.97
28 3 0.01
ACGTcount: A:0.40, C:0.20, G:0.22, T:0.18
Consensus pattern (27 bp):
GGGTAAAATGACCGAAATACCCCCGAA
Found at i:24051686 original size:81 final size:81
Alignment explanation
Indices: 24051548--24051930 Score: 328
Period size: 81 Copynumber: 4.7 Consensus size: 81
24051538 GCGATTCGTG
* * * * * * *
24051548 GGTAAAATAACCGATATACCCCGGAAGTGTAAAATGACCGAATTACCCCCAAAGGGTAAAATGAC
1 GGTAAAATGATCGAAATACCCCTGAAGGGTAAAATGACCGAAATACCCCCGAAGGGTAAAATGAC
24051613 CGAAATACCCTCGAAA
66 CGAAATACCCTCGAAA
* * * * *
24051629 GGTAAAATGGTCGAATTACCCCCGAAGGGTAAAATGACCGAGATACCCCCGATGGGTAAAATGAC
1 GGTAAAATGATCGAAATACCCCTGAAGGGTAAAATGACCGAAATACCCCCGAAGGGTAAAATGAC
* * * *
24051694 TGAAATAACCTTG-AT
66 CGAAATACCCTCGAAA
* * * * ** * *
24051709 GGATAAAATAACCGAAATACTCTTGAAGGGTAAAATGATTGAAATACCCGCGATGGGTAAAATGA
1 GG-TAAAATGATCGAAATACCCCTGAAGGGTAAAATGACCGAAATACCCCCGAAGGGTAAAATGA
* * *
24051774 TC-AAATTACCCCCGAAG
65 CCGAAA-TACCCTCGAAA
* *
24051791 GGTAAAATGATCTAAATACCCCTGAAGGGTAAAATGACCGAAATACCCCCGAAGGGTAAAGTGAC
1 GGTAAAATGATCGAAATACCCCTGAAGGGTAAAATGACCGAAATACCCCCGAAGGGTAAAATGAC
* * ** *
24051856 TGGAATAACCCTATAGA
66 CGAAAT-ACCCTCGAAA
* * * *
24051873 GG-AGAATGATTGAAATACCTCC--ATAGGATAAAATGACTGAAATACCCCC-ATAGGGTAA
1 GGTAAAATGATCGAAATACC-CCTGA-AGGGTAAAATGACCGAAATACCCCCGA-AGGGTAA
24051931 TGATGTTATA
Statistics
Matches: 239, Mismatches: 55, Indels: 16
0.77 0.18 0.05
Matches are distributed among these distances:
80 8 0.03
81 217 0.91
82 14 0.06
ACGTcount: A:0.40, C:0.20, G:0.21, T:0.19
Consensus pattern (81 bp):
GGTAAAATGATCGAAATACCCCTGAAGGGTAAAATGACCGAAATACCCCCGAAGGGTAAAATGAC
CGAAATACCCTCGAAA
Found at i:24051862 original size:27 final size:27
Alignment explanation
Indices: 24051547--24051930 Score: 296
Period size: 27 Copynumber: 14.2 Consensus size: 27
24051537 TGCGATTCGT
* * * *
24051547 GGGTAAAATAACCGATATACCCCGGAA
1 GGGTAAAATGACTGAAATACCCCCGAA
* * * *
24051574 GTGTAAAATGACCGAATTACCCCCAAA
1 GGGTAAAATGACTGAAATACCCCCGAA
* *
24051601 GGGTAAAATGACCGAAATACCCTCGAA
1 GGGTAAAATGACTGAAATACCCCCGAA
* * *
24051628 AGGTAAAATG-GTCGAATTACCCCCGAA
1 GGGTAAAATGACT-GAAATACCCCCGAA
* * *
24051655 GGGTAAAATGACCGAGATACCCCCGAT
1 GGGTAAAATGACTGAAATACCCCCGAA
* ** *
24051682 GGGTAAAATGACTGAAATAACCTTGAT
1 GGGTAAAATGACTGAAATACCCCCGAA
* * * * **
24051709 GGATAAAATAACCGAAATACTCTTGAA
1 GGGTAAAATGACTGAAATACCCCCGAA
* * *
24051736 GGGTAAAATGATTGAAATACCCGCGAT
1 GGGTAAAATGACTGAAATACCCCCGAA
*
24051763 GGGTAAAATGA-TCAAATTACCCCCGAA
1 GGGTAAAATGACTGAAA-TACCCCCGAA
*
24051790 GGGTAAAATGATCT-AAATACCCCTGAA
1 GGGTAAAATGA-CTGAAATACCCCCGAA
*
24051817 GGGTAAAATGACCGAAATACCCCCGAA
1 GGGTAAAATGACTGAAATACCCCCGAA
* * * *
24051844 GGGTAAAGTGACTGGAATA-ACCCTATA
1 GGGTAAAATGACTGAAATACCCCCGA-A
* * *
24051871 GAGG-AGAATGATTGAAATACCTCC-ATA
1 G-GGTAAAATGACTGAAATACCCCCGA-A
*
24051898 GGATAAAATGACTGAAATACCCCC-ATA
1 GGGTAAAATGACTGAAATACCCCCGA-A
24051925 GGGTAA
1 GGGTAA
24051931 TGATGTTATA
Statistics
Matches: 285, Mismatches: 62, Indels: 20
0.78 0.17 0.05
Matches are distributed among these distances:
26 10 0.04
27 267 0.94
28 7 0.02
29 1 0.00
ACGTcount: A:0.40, C:0.20, G:0.21, T:0.19
Consensus pattern (27 bp):
GGGTAAAATGACTGAAATACCCCCGAA
Found at i:24052353 original size:28 final size:28
Alignment explanation
Indices: 24052302--24052491 Score: 294
Period size: 28 Copynumber: 6.9 Consensus size: 28
24052292 ACTGTACCGA
24052302 TACTGTATT-GGCTAAGGCCCACATTGT
1 TACTGTATTGGGCTAAGGCCCACATTGT
* *
24052329 TACTGTATTGGGCTAAGGCCTACATTAT
1 TACTGTATTGGGCTAAGGCCCACATTGT
24052357 TACTGTATTGGGCTAAGGCCCACATTGT
1 TACTGTATTGGGCTAAGGCCCACATTGT
*
24052385 TACTGTATTGGGCTAAGG-CCACATTTT
1 TACTGTATTGGGCTAAGGCCCACATTGT
*
24052412 TACTGTATTGGGCTAAGGGCCACATTGT
1 TACTGTATTGGGCTAAGGCCCACATTGT
*
24052440 TACTGTATTGGGCTAAGGCCCACATTAT
1 TACTGTATTGGGCTAAGGCCCACATTGT
***
24052468 TACAACATTGGGCTAAGGCCCACA
1 TACTGTATTGGGCTAAGGCCCACA
24052492 CTGAGTTTTC
Statistics
Matches: 150, Mismatches: 11, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
27 35 0.23
28 115 0.77
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (28 bp):
TACTGTATTGGGCTAAGGCCCACATTGT
Found at i:24052443 original size:83 final size:83
Alignment explanation
Indices: 24052302--24052487 Score: 286
Period size: 83 Copynumber: 2.2 Consensus size: 83
24052292 ACTGTACCGA
24052302 TACTGTATT-GGCTAAGGCCCACATTGTTACTGTATTGGGCTAAGGCCTACATTATTACTGTATT
1 TACTGTATTGGGCTAAGG-CCACATTGTTACTGTATTGGGCTAAGGCCTACATTATTACTGTATT
*
24052366 GGGCTAAGGCCCACATTGT
65 GGGCTAAGGCCCACATTAT
* *
24052385 TACTGTATTGGGCTAAGGCCACATTTTTACTGTATTGGGCTAAGGGCC-ACATTGTTACTGTATT
1 TACTGTATTGGGCTAAGGCCACATTGTTACTGTATTGGGCTAA-GGCCTACATTATTACTGTATT
24052449 GGGCTAAGGCCCACATTAT
65 GGGCTAAGGCCCACATTAT
***
24052468 TACAACATTGGGCTAAGGCC
1 TACTGTATTGGGCTAAGGCC
24052488 CACACTGAGT
Statistics
Matches: 95, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
83 83 0.87
84 12 0.13
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (83 bp):
TACTGTATTGGGCTAAGGCCACATTGTTACTGTATTGGGCTAAGGCCTACATTATTACTGTATTG
GGCTAAGGCCCACATTAT
Found at i:24053613 original size:19 final size:20
Alignment explanation
Indices: 24053571--24053613 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
24053561 TCATGCTTTT
* *
24053571 TATTCACATTTTCATATTCA
1 TATTCACATTCTCAAATTCA
24053591 -ATTCACATTCTCAAATT-A
1 TATTCACATTCTCAAATTCA
24053609 TATTC
1 TATTC
24053614 CACAATCACG
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
18 1 0.05
19 19 0.95
ACGTcount: A:0.33, C:0.21, G:0.00, T:0.47
Consensus pattern (20 bp):
TATTCACATTCTCAAATTCA
Found at i:24054342 original size:22 final size:22
Alignment explanation
Indices: 24054314--24054390 Score: 93
Period size: 22 Copynumber: 3.4 Consensus size: 22
24054304 AATATTAAAT
24054314 AGAGAGCACTAAAGTGCTATAC
1 AGAGAGCACTAAAGTGCTATAC
*
24054336 AGAGAGCAC-AAATGTGCTAAAC
1 AGAGAGCACTAAA-GTGCTATAC
*
24054358 AGAGAGCACTAATGTGCTGATAATC
1 AGAGAGCACTAAAGTGCT-AT-A-C
24054383 AGAGAGCA
1 AGAGAGCA
24054391 TGCTAGTAAT
Statistics
Matches: 47, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
21 3 0.06
22 31 0.66
23 3 0.06
24 1 0.02
25 9 0.19
ACGTcount: A:0.42, C:0.17, G:0.25, T:0.17
Consensus pattern (22 bp):
AGAGAGCACTAAAGTGCTATAC
Found at i:24054425 original size:25 final size:25
Alignment explanation
Indices: 24054391--24054485 Score: 127
Period size: 25 Copynumber: 3.8 Consensus size: 25
24054381 TCAGAGAGCA
* *
24054391 TGCTAGTAATCAAAGAGCACTGACG
1 TGCTAATAATCAGAGAGCACTGACG
* *
24054416 TGCTAATAATCAGAGAGCATTGACA
1 TGCTAATAATCAGAGAGCACTGACG
* *
24054441 TGCTAATAATCAGATAACACTGACG
1 TGCTAATAATCAGAGAGCACTGACG
*
24054466 TGCTAATAATCATAGAGCAC
1 TGCTAATAATCAGAGAGCAC
24054486 ACTAAACTCC
Statistics
Matches: 59, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 59 1.00
ACGTcount: A:0.39, C:0.19, G:0.19, T:0.23
Consensus pattern (25 bp):
TGCTAATAATCAGAGAGCACTGACG
Found at i:24054451 original size:50 final size:50
Alignment explanation
Indices: 24054389--24054484 Score: 147
Period size: 50 Copynumber: 1.9 Consensus size: 50
24054379 AATCAGAGAG
* *
24054389 CATGCTAGTAATCAAAGAGCACTGACGTGCTAATAATCAGAGAGCATTGA
1 CATGCTAATAATCAAAGAACACTGACGTGCTAATAATCAGAGAGCATTGA
* * *
24054439 CATGCTAATAATCAGATAACACTGACGTGCTAATAATCATAGAGCA
1 CATGCTAATAATCAAAGAACACTGACGTGCTAATAATCAGAGAGCA
24054485 CACTAAACTC
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
50 41 1.00
ACGTcount: A:0.40, C:0.19, G:0.19, T:0.23
Consensus pattern (50 bp):
CATGCTAATAATCAAAGAACACTGACGTGCTAATAATCAGAGAGCATTGA
Found at i:24058782 original size:79 final size:79
Alignment explanation
Indices: 24058651--24058811 Score: 313
Period size: 79 Copynumber: 2.0 Consensus size: 79
24058641 GTATCGAAAG
24058651 AGAGGATTACATGGGAATTTTTCCAAACCGAATTCTGAAAGAAATATATCAGCCATAGGTTCCTT
1 AGAGGATTACATGGGAATTTTTCCAAACCGAATTCTGAAAGAAATATATCAGCCATAGGTTCCTT
24058716 GATCAGAAACGTAA
66 GATCAGAAACGTAA
24058730 AGAGGATTACATGGGAATTTTTCCAAACCGAATTCTGAAAGAAATATATCAGCCATAGGTTCCTT
1 AGAGGATTACATGGGAATTTTTCCAAACCGAATTCTGAAAGAAATATATCAGCCATAGGTTCCTT
*
24058795 GATCAGAAATGTAA
66 GATCAGAAACGTAA
24058809 AGA
1 AGA
24058812 ATTCCTAGAA
Statistics
Matches: 81, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
79 81 1.00
ACGTcount: A:0.39, C:0.16, G:0.19, T:0.27
Consensus pattern (79 bp):
AGAGGATTACATGGGAATTTTTCCAAACCGAATTCTGAAAGAAATATATCAGCCATAGGTTCCTT
GATCAGAAACGTAA
Found at i:24064175 original size:24 final size:24
Alignment explanation
Indices: 24064143--24064193 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
24064133 CAACTTGCAA
* *
24064143 GAGTGTCCCATTATTAGCTCTCAT
1 GAGTATCCCAATATTAGCTCTCAT
* *
24064167 GAGTATCCCAATATTGGCTCTCTT
1 GAGTATCCCAATATTAGCTCTCAT
24064191 GAG
1 GAG
24064194 CTACCCGATA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.35
Consensus pattern (24 bp):
GAGTATCCCAATATTAGCTCTCAT
Found at i:24067948 original size:17 final size:18
Alignment explanation
Indices: 24067923--24067957 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
24067913 AACTAGGGCA
24067923 AAGATAAACATGCTTACT
1 AAGATAAACATGCTTACT
24067941 AAGA-AAACATGCTTACT
1 AAGATAAACATGCTTACT
24067958 TAGCTCCAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.46, C:0.17, G:0.11, T:0.26
Consensus pattern (18 bp):
AAGATAAACATGCTTACT
Found at i:24075481 original size:16 final size:16
Alignment explanation
Indices: 24075439--24075503 Score: 85
Period size: 16 Copynumber: 4.1 Consensus size: 16
24075429 TTCGCTGTAT
*
24075439 TGGAATAGAGACGTAA
1 TGGAATAGAGGCGTAA
24075455 TGGAATAGAGGCGTAA
1 TGGAATAGAGGCGTAA
*
24075471 TGGAATAGAGGTGTAA
1 TGGAATAGAGGCGTAA
* * *
24075487 TAGATTAGAGGTGTAA
1 TGGAATAGAGGCGTAA
24075503 T
1 T
24075504 AGCAAATCAA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 45 1.00
ACGTcount: A:0.38, C:0.03, G:0.34, T:0.25
Consensus pattern (16 bp):
TGGAATAGAGGCGTAA
Found at i:24075541 original size:45 final size:44
Alignment explanation
Indices: 24075482--24075579 Score: 126
Period size: 45 Copynumber: 2.2 Consensus size: 44
24075472 GGAATAGAGG
*
24075482 TGTAATAGATTAGAGGTGTAATAGCAAATCAAT-TGTTTGGTTGAA
1 TGTAATAGAATAGAGGTGTAATAG--AATCAATGTGTTTGGTTGAA
* * * *
24075527 TGTAATGGAATAGAGGTGTAATAGTATTATTGTGTTTGGTTGAA
1 TGTAATAGAATAGAGGTGTAATAGAATCAATGTGTTTGGTTGAA
24075571 TGTAATAGA
1 TGTAATAGA
24075580 GGTGTAATAG
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
43 4 0.09
44 20 0.43
45 22 0.48
ACGTcount: A:0.34, C:0.02, G:0.27, T:0.38
Consensus pattern (44 bp):
TGTAATAGAATAGAGGTGTAATAGAATCAATGTGTTTGGTTGAA
Found at i:24075884 original size:14 final size:15
Alignment explanation
Indices: 24075835--24075886 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
24075825 ATAAAATATA
24075835 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
24075850 TATTAAATATATTAT
1 AATTAAATATATTAT
24075865 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
24075878 AATTTAATA
1 AATTAAATA
24075887 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:24075932 original size:120 final size:120
Alignment explanation
Indices: 24075720--24076060 Score: 643
Period size: 120 Copynumber: 2.9 Consensus size: 120
24075710 ATCATATTTA
24075720 AACATAATTATTATTAAATATATTATAATTAAAA-ATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
24075784 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
*
24075839 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
24075904 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAATTT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
24075959 AACATAATTATTATTAAATATATTATAATT-AAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
24076023 TATTCTTATATGAATTTACTCAAATCATAATATA-GATA
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATA
24076061 ATTTAACATA
Statistics
Matches: 218, Mismatches: 3, Indels: 3
0.97 0.01 0.01
Matches are distributed among these distances:
118 4 0.02
119 101 0.46
120 113 0.52
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.43
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
Found at i:24076004 original size:17 final size:15
Alignment explanation
Indices: 24075951--24075996 Score: 58
Period size: 15 Copynumber: 3.0 Consensus size: 15
24075941 TACTATAAAA
24075951 TATAATTTAACATA-AT
1 TATAA-TTAA-ATATAT
*
24075967 TATTATTAAATATAT
1 TATAATTAAATATAT
24075982 TATAATTAAATATAT
1 TATAATTAAATATAT
24075997 AATTTAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
14 3 0.11
15 20 0.74
16 4 0.15
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (15 bp):
TATAATTAAATATAT
Found at i:24085354 original size:14 final size:14
Alignment explanation
Indices: 24085335--24085362 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
24085325 CCTTGGGTAT
24085335 GATCCTCGGAGTAC
1 GATCCTCGGAGTAC
24085349 GATCCTCGGAGTAC
1 GATCCTCGGAGTAC
24085363 TCACCTACTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.21
Consensus pattern (14 bp):
GATCCTCGGAGTAC
Found at i:24087193 original size:77 final size:77
Alignment explanation
Indices: 24087081--24087235 Score: 258
Period size: 77 Copynumber: 2.0 Consensus size: 77
24087071 TTCTGCTCAC
*
24087081 CGCCTTATTTCTCCTTCTCTCATTTTCCTTATTTCTCCATGTAAGAAGTCACAACGTGATAAAGT
1 CGCCTTATTTCTCATTCTCTCATTTTCCTTATTTCTCCATGTAAGAAGTCACAACGTGATAAAGT
24087146 AACTACGGTCAG
66 AACTACGGTCAG
** *
24087158 CGCCTTATTTCTCATTCTCTCATCTTT-CTTATTTCTCCATGTTGGAATTCACAACGTGATAAAG
1 CGCCTTATTTCTCATTCTCTCAT-TTTCCTTATTTCTCCATGTAAGAAGTCACAACGTGATAAAG
24087222 TAACTACGGTCAG
65 TAACTACGGTCAG
24087235 C
1 C
24087236 TTACGAGTTT
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
77 70 0.96
78 3 0.04
ACGTcount: A:0.24, C:0.26, G:0.13, T:0.37
Consensus pattern (77 bp):
CGCCTTATTTCTCATTCTCTCATTTTCCTTATTTCTCCATGTAAGAAGTCACAACGTGATAAAGT
AACTACGGTCAG
Found at i:24091345 original size:19 final size:18
Alignment explanation
Indices: 24091317--24091359 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
24091307 CTCATTCACA
*
24091317 TCTCTTCTCTCACAACTTT
1 TCTCTCCTCTCAC-ACTTT
*
24091336 TCTCTCCTCTCTCACTTT
1 TCTCTCCTCTCACACTTT
*
24091354 TTTCTC
1 TCTCTC
24091360 TTATTTTCCC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 10 0.48
19 11 0.52
ACGTcount: A:0.09, C:0.40, G:0.00, T:0.51
Consensus pattern (18 bp):
TCTCTCCTCTCACACTTT
Found at i:24103066 original size:16 final size:16
Alignment explanation
Indices: 24103038--24103072 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
24103028 GCAAATTAGT
24103038 AATAAAACTAAAGTAA
1 AATAAAACTAAAGTAA
24103054 AATAATAAC-AAAGTAA
1 AATAA-AACTAAAGTAA
24103070 AAT
1 AAT
24103073 TTCATCTTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 15 0.83
17 3 0.17
ACGTcount: A:0.69, C:0.06, G:0.06, T:0.20
Consensus pattern (16 bp):
AATAAAACTAAAGTAA
Found at i:24111945 original size:33 final size:34
Alignment explanation
Indices: 24111908--24111979 Score: 119
Period size: 33 Copynumber: 2.1 Consensus size: 34
24111898 GAGTTTGTTT
24111908 ATTAAATTTAGTTCAACTCAAATAAGTGTTAG-A
1 ATTAAATTTAGTTCAACTCAAATAAGTGTTAGTA
* *
24111941 ATTAATTTTAGTTCAACTTAAATAAGTGTTAGTA
1 ATTAAATTTAGTTCAACTCAAATAAGTGTTAGTA
24111975 ATTAA
1 ATTAA
24111980 TTTGTTTAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
33 30 0.83
34 6 0.17
ACGTcount: A:0.42, C:0.07, G:0.11, T:0.40
Consensus pattern (34 bp):
ATTAAATTTAGTTCAACTCAAATAAGTGTTAGTA
Found at i:24115442 original size:21 final size:23
Alignment explanation
Indices: 24115407--24115448 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
24115397 TAAATGTACG
24115407 TTCATTGAACATTAC-CTTTTTA
1 TTCATTGAACATTACTCTTTTTA
*
24115429 TTCATTG-TCATTACTCTTTT
1 TTCATTGAACATTACTCTTTT
24115449 CATTTTCATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.21, C:0.19, G:0.05, T:0.55
Consensus pattern (23 bp):
TTCATTGAACATTACTCTTTTTA
Found at i:24115699 original size:35 final size:34
Alignment explanation
Indices: 24115638--24115796 Score: 210
Period size: 34 Copynumber: 4.6 Consensus size: 34
24115628 TACATCGATA
* * *
24115638 ATCCAACCGAAACAGACTAGATGCTCATAAGAGCT
1 ATCCATCCGAAACACACCA-ATGCTCATAAGAGCT
* *
24115673 AATCCATCTGGAACACACCAATGCTCATAAGAGCT
1 -ATCCATCCGAAACACACCAATGCTCATAAGAGCT
*
24115708 AATCCATCCGAAACACATCAATGCTCATAAGAGCT
1 -ATCCATCCGAAACACACCAATGCTCATAAGAGCT
* *
24115743 ATCCATCCAAAACACACCAATGCTCATAAAAGCT
1 ATCCATCCGAAACACACCAATGCTCATAAGAGCT
*
24115777 ATCCATCCAAAACACACCAA
1 ATCCATCCGAAACACACCAA
24115797 AACAAAGAGT
Statistics
Matches: 112, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
34 51 0.46
35 47 0.42
36 14 0.12
ACGTcount: A:0.42, C:0.30, G:0.11, T:0.18
Consensus pattern (34 bp):
ATCCATCCGAAACACACCAATGCTCATAAGAGCT
Found at i:24115761 original size:69 final size:71
Alignment explanation
Indices: 24115636--24115793 Score: 216
Period size: 69 Copynumber: 2.3 Consensus size: 71
24115626 AGTACATCGA
* * ***
24115636 TAATCCAACCGAAACAGACTAGATGCTCATAAGAGCTAATCCATCTGGAACACACCAATGCTCAT
1 TAATCCATCCGAAACACACTAGATGCTCATAAGAGCTAATCCATCCAAAACACACCAATGCTCAT
*
24115701 AAGAGC
66 AAAAGC
24115707 TAATCCATCCGAAACACA-TCA-ATGCTCATAAGAGCT-ATCCATCCAAAACACACCAATGCTCA
1 TAATCCATCCGAAACACACT-AGATGCTCATAAGAGCTAATCCATCCAAAACACACCAATGCTCA
24115769 TAAAAGC
65 TAAAAGC
*
24115776 T-ATCCATCCAAAACACAC
1 TAATCCATCCGAAACACAC
24115794 CAAAACAAAG
Statistics
Matches: 78, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
68 15 0.19
69 30 0.38
70 16 0.21
71 17 0.22
ACGTcount: A:0.41, C:0.30, G:0.11, T:0.18
Consensus pattern (71 bp):
TAATCCATCCGAAACACACTAGATGCTCATAAGAGCTAATCCATCCAAAACACACCAATGCTCAT
AAAAGC
Found at i:24119107 original size:19 final size:19
Alignment explanation
Indices: 24119083--24119126 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
24119073 GACCCCTGCA
* *
24119083 TCTCAAATTTTCATG-TTTT
1 TCTCAAAATTTC-TGATTTG
24119102 TCTCAAAATTTCTGATTTG
1 TCTCAAAATTTCTGATTTG
24119121 TCTCAA
1 TCTCAA
24119127 TTTGATCCCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 2 0.09
19 20 0.91
ACGTcount: A:0.25, C:0.18, G:0.07, T:0.50
Consensus pattern (19 bp):
TCTCAAAATTTCTGATTTG
Found at i:24120427 original size:33 final size:34
Alignment explanation
Indices: 24120369--24120447 Score: 97
Period size: 33 Copynumber: 2.3 Consensus size: 34
24120359 GACAATCAAT
* *
24120369 ATACAACAAGCAGTGACAGTCTGGGCCTGAGCCCT
1 ATACAATAA-CAGTGACAGTCTGGGCCTGAGCCCA
* * *
24120404 ATTCAATAACAGT-ACAGTGTGGGCCTTAGCCCA
1 ATACAATAACAGTGACAGTCTGGGCCTGAGCCCA
24120437 ATACAATAACA
1 ATACAATAACA
24120448 ATATGGGCCT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
33 27 0.71
34 4 0.11
35 7 0.18
ACGTcount: A:0.34, C:0.25, G:0.20, T:0.20
Consensus pattern (34 bp):
ATACAATAACAGTGACAGTCTGGGCCTGAGCCCA
Found at i:24120438 original size:28 final size:28
Alignment explanation
Indices: 24120407--24120497 Score: 130
Period size: 28 Copynumber: 3.2 Consensus size: 28
24120397 GAGCCCTATT
*
24120407 CAATAACAGT-ACAGTGTGGGCCTTAGCC
1 CAAT-ACAGTAACAATGTGGGCCTTAGCC
* *
24120435 CAATACAATAACAATATGGGCCTTAGCC
1 CAATACAGTAACAATGTGGGCCTTAGCC
*
24120463 CAATACAGTAATAATGTGGGCCTTAGCC
1 CAATACAGTAACAATGTGGGCCTTAGCC
24120491 CAATACA
1 CAATACA
24120498 ATATCGGTAC
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 4 0.07
28 52 0.93
ACGTcount: A:0.35, C:0.24, G:0.19, T:0.22
Consensus pattern (28 bp):
CAATACAGTAACAATGTGGGCCTTAGCC
Found at i:24120500 original size:33 final size:33
Alignment explanation
Indices: 24120390--24120500 Score: 82
Period size: 33 Copynumber: 3.7 Consensus size: 33
24120380 AGTGACAGTC
* * * * *
24120390 TGGGCCTGAGCCCTATTCAATAACAGT-ACAGTG
1 TGGGCCTTAGCCCAATACAAT-ACAGTAATAATG
*
24120423 TGGGCCTTAGCCCAATACAATA-A-CAAT-A--
1 TGGGCCTTAGCCCAATACAATACAGTAATAATG
24120451 TGGGCCTTAG-CC----CAATACAGTAATAATG
1 TGGGCCTTAGCCCAATACAATACAGTAATAATG
24120479 TGGGCCTTAGCCCAATACAATA
1 TGGGCCTTAGCCCAATACAATA
24120501 TCGGTACAGT
Statistics
Matches: 60, Mismatches: 7, Indels: 22
0.67 0.08 0.25
Matches are distributed among these distances:
23 5 0.08
24 1 0.02
25 3 0.05
26 1 0.02
27 2 0.03
28 20 0.33
29 2 0.03
31 2 0.03
32 1 0.02
33 23 0.38
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.23
Consensus pattern (33 bp):
TGGGCCTTAGCCCAATACAATACAGTAATAATG
Found at i:24120637 original size:26 final size:26
Alignment explanation
Indices: 24120608--24120710 Score: 125
Period size: 26 Copynumber: 4.0 Consensus size: 26
24120598 AACACACCAA
* *
24120608 TATCGCCGCAAAGCTGCCAGTAATAG
1 TATCGCAGCAAAGCTGCCAGTAACAG
* * * **
24120634 TATCACAACGAAGCTATCAGTAACAG
1 TATCGCAGCAAAGCTGCCAGTAACAG
24120660 TATCGCAGCAAAGCTGCCAGTAACAG
1 TATCGCAGCAAAGCTGCCAGTAACAG
* *
24120686 TATCGCAGCAAAGCTACCAATAACA
1 TATCGCAGCAAAGCTGCCAGTAACA
24120711 ATATACTTCC
Statistics
Matches: 63, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 63 1.00
ACGTcount: A:0.38, C:0.26, G:0.18, T:0.17
Consensus pattern (26 bp):
TATCGCAGCAAAGCTGCCAGTAACAG
Found at i:24120700 original size:52 final size:52
Alignment explanation
Indices: 24120608--24120710 Score: 143
Period size: 52 Copynumber: 2.0 Consensus size: 52
24120598 AACACACCAA
* * * * *
24120608 TATCGCCGCAAAGCTGCCAGTAATAGTATCACAACGAAGCTATCAGTAACAG
1 TATCGCAGCAAAGCTGCCAGTAACAGTATCACAACAAAGCTACCAATAACAG
* *
24120660 TATCGCAGCAAAGCTGCCAGTAACAGTATCGCAGCAAAGCTACCAATAACA
1 TATCGCAGCAAAGCTGCCAGTAACAGTATCACAACAAAGCTACCAATAACA
24120711 ATATACTTCC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
52 44 1.00
ACGTcount: A:0.38, C:0.26, G:0.18, T:0.17
Consensus pattern (52 bp):
TATCGCAGCAAAGCTGCCAGTAACAGTATCACAACAAAGCTACCAATAACAG
Found at i:24120897 original size:27 final size:27
Alignment explanation
Indices: 24120879--24121389 Score: 593
Period size: 27 Copynumber: 19.0 Consensus size: 27
24120869 GGTATAATAG
* * *
24120879 TCATTTTACTCTATGGGGGCATTTCGA
1 TCATTTTACCCTATGGGGGTAATTCGA
* * * * *
24120906 TCATTCTACCATATGGGGGTACTTTGG
1 TCATTTTACCCTATGGGGGTAATTCGA
24120933 TCATTTTACCCTATGGGGGTAATTCGA
1 TCATTTTACCCTATGGGGGTAATTCGA
* * *
24120960 TCATTTTACCCTATAGAGGTATTTCGA
1 TCATTTTACCCTATGGGGGTAATTCGA
* * *
24120987 TCATTCTACCCTAT-AGGGTATTTCGA
1 TCATTTTACCCTATGGGGGTAATTCGA
* *
24121013 TCATTTTACCTTATAGGGGTAATTCGA
1 TCATTTTACCCTATGGGGGTAATTCGA
* * *
24121040 TCATTCTACCTTATGGGGGTATTTC-A
1 TCATTTTACCCTATGGGGGTAATTCGA
* *
24121066 GTCACTCTACCCTATGGGGGTAATTC-A
1 -TCATTTTACCCTATGGGGGTAATTCGA
* * *
24121093 GTTATTTTACCCTATGGGGATAATTCGG
1 -TCATTTTACCCTATGGGGGTAATTCGA
* *
24121121 TCATTTTACCCTGTGAGGGTAATTC-A
1 TCATTTTACCCTATGGGGGTAATTCGA
*
24121147 GTTATTTTACCCTATGGGGGTAATTCGA
1 -TCATTTTACCCTATGGGGGTAATTCGA
*
24121175 TTATTTTACCCTATGGGGGTAATTCGA
1 TCATTTTACCCTATGGGGGTAATTCGA
* *
24121202 TCATTTTACCCTATGAGGGTATTTCGA
1 TCATTTTACCCTATGGGGGTAATTCGA
* * *
24121229 TCATTTTACCCTATGAGAGTAATTCGG
1 TCATTTTACCCTATGGGGGTAATTCGA
* *
24121256 TCATTTTACCCTATGAGGGTATTTCGA
1 TCATTTTACCCTATGGGGGTAATTCGA
24121283 TCATTTTACCCTATGGGGGTAATTCGA
1 TCATTTTACCCTATGGGGGTAATTCGA
* *
24121310 TAATTTTACCCTATAGGGGTAATTC-A
1 TCATTTTACCCTATGGGGGTAATTCGA
24121336 GTCATTTTACCCTATGGGGGTAATTC-A
1 -TCATTTTACCCTATGGGGGTAATTCGA
*
24121363 GTCATTTTATCCTATGGGGGTAATTCG
1 -TCATTTTACCCTATGGGGGTAATTCG
24121390 GTTATAAGAG
Statistics
Matches: 420, Mismatches: 57, Indels: 13
0.86 0.12 0.03
Matches are distributed among these distances:
26 24 0.06
27 395 0.94
28 1 0.00
ACGTcount: A:0.23, C:0.18, G:0.21, T:0.39
Consensus pattern (27 bp):
TCATTTTACCCTATGGGGGTAATTCGA
Found at i:24122424 original size:32 final size:32
Alignment explanation
Indices: 24122374--24122528 Score: 139
Period size: 32 Copynumber: 4.8 Consensus size: 32
24122364 AGCCATAAAT
***
24122374 ACAGTAATATGGTTGGCACAAAGCCATCAGTA
1 ACAGTAATATGACCGGCACAAAGCCATCAGTA
* * * *
24122406 GCAGTGATATGATCGGCACATAGCCATCAGTA
1 ACAGTAATATGACCGGCACAAAGCCATCAGTA
** * *
24122438 ATGGTAATATGACCGACACAAAGCCATCAGTT
1 ACAGTAATATGACCGGCACAAAGCCATCAGTA
* * ** * * *
24122470 GCAGTGATATGATTGACACACAGTCATCAGTA
1 ACAGTAATATGACCGGCACAAAGCCATCAGTA
*
24122502 ACGGTAATATGACCGGCACAAAGCCAT
1 ACAGTAATATGACCGGCACAAAGCCAT
24122529 TAGCAGCATC
Statistics
Matches: 93, Mismatches: 30, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
32 93 1.00
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.21
Consensus pattern (32 bp):
ACAGTAATATGACCGGCACAAAGCCATCAGTA
Found at i:24122464 original size:64 final size:64
Alignment explanation
Indices: 24122390--24122528 Score: 215
Period size: 64 Copynumber: 2.2 Consensus size: 64
24122380 ATATGGTTGG
* * *
24122390 CACAAAGCCATCAGTAGCAGTGATATGATCGGCACATAGCCATCAGTAATGGTAATATGACCGA
1 CACAAAGCCATCAGTAGCAGTGATATGATCGACACACAGCCATCAGTAACGGTAATATGACCGA
* * * *
24122454 CACAAAGCCATCAGTTGCAGTGATATGATTGACACACAGTCATCAGTAACGGTAATATGACCGG
1 CACAAAGCCATCAGTAGCAGTGATATGATCGACACACAGCCATCAGTAACGGTAATATGACCGA
24122518 CACAAAGCCAT
1 CACAAAGCCAT
24122529 TAGCAGCATC
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 68 1.00
ACGTcount: A:0.36, C:0.23, G:0.21, T:0.20
Consensus pattern (64 bp):
CACAAAGCCATCAGTAGCAGTGATATGATCGACACACAGCCATCAGTAACGGTAATATGACCGA
Found at i:24122563 original size:26 final size:26
Alignment explanation
Indices: 24122532--24122583 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
24122522 AAGCCATTAG
** *
24122532 CAGCATCGTAGCAAAGCTACGAGTAA
1 CAGCATCACAGCAAAGCTACCAGTAA
24122558 CAGCATCACAGCAAAGCTACCAGTAA
1 CAGCATCACAGCAAAGCTACCAGTAA
24122584 ACAGAATATG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.40, C:0.27, G:0.19, T:0.13
Consensus pattern (26 bp):
CAGCATCACAGCAAAGCTACCAGTAA
Found at i:24122763 original size:24 final size:24
Alignment explanation
Indices: 24122733--24122791 Score: 73
Period size: 24 Copynumber: 2.5 Consensus size: 24
24122723 ATAGATAAAA
*
24122733 CAATCATTTAAATTACAGACAAAT
1 CAATCATTTAAATCACAGACAAAT
* ** *
24122757 CAGTCATTTTCATCACAGACCAAT
1 CAATCATTTAAATCACAGACAAAT
24122781 CAATCATTTAA
1 CAATCATTTAA
24122792 CCTCGAGGGA
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.42, C:0.22, G:0.05, T:0.31
Consensus pattern (24 bp):
CAATCATTTAAATCACAGACAAAT
Found at i:24122852 original size:27 final size:26
Alignment explanation
Indices: 24122822--24122879 Score: 62
Period size: 27 Copynumber: 2.2 Consensus size: 26
24122812 TTTACCCTCT
*
24122822 AGGGGCATTACAGTCATTTTACCTTA
1 AGGGGCATTACAGTCATTTTACCGTA
* ***
24122848 CAGGGGTATTTTGGTCATTTTACCGTA
1 -AGGGGCATTACAGTCATTTTACCGTA
24122875 AGGGG
1 AGGGG
24122880 GTATCTCGGT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 5 0.19
27 21 0.81
ACGTcount: A:0.22, C:0.16, G:0.28, T:0.34
Consensus pattern (26 bp):
AGGGGCATTACAGTCATTTTACCGTA
Found at i:24122890 original size:27 final size:27
Alignment explanation
Indices: 24122834--24122890 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
24122824 GGGCATTACA
* * *
24122834 GTCATTTTACCTTACAGGGGTATTTTG
1 GTCATTTTACCGTACAGGGGTATCTCG
24122861 GTCATTTTACCGTA-AGGGGGTATCTCG
1 GTCATTTTACCGTACA-GGGGTATCTCG
24122888 GTC
1 GTC
24122891 CCTTTACCCC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 1 0.04
27 25 0.96
ACGTcount: A:0.18, C:0.18, G:0.26, T:0.39
Consensus pattern (27 bp):
GTCATTTTACCGTACAGGGGTATCTCG
Found at i:24122961 original size:81 final size:81
Alignment explanation
Indices: 24122851--24123033 Score: 192
Period size: 81 Copynumber: 2.3 Consensus size: 81
24122841 TACCTTACAG
* * * *
24122851 GGGTATTTTGGTCATTTTACCGTAAGGGGGT-ATCTCGGTCCCTTTACCCCAT-GA-GAGTATTT
1 GGGTATTTCGGTCATTTTACCCTAAGGGGGTAAT-TCGATCACTTTA-CCCATCGAGGA-TATTT
* *
24122913 TGGTCATTGTATCCTTCGA
63 TGGTAATTGTATCCATCGA
* ** *
24122932 GGGTATTTCAGTCATTTTACCCTGTGGGGGTAATTCGATCATTTTACCCATCGAGGATATTTTGG
1 GGGTATTTCGGTCATTTTACCCTAAGGGGGTAATTCGATCACTTTACCCATCGAGGATATTTTGG
* **
24122997 TAATTTTATTGATCGA
66 TAATTGTATCCATCGA
*
24123013 GGGTATTTCGGTAATTTTACC
1 GGGTATTTCGGTCATTTTACC
24123034 TACCAAGGGT
Statistics
Matches: 84, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
80 5 0.06
81 75 0.89
82 4 0.05
ACGTcount: A:0.20, C:0.17, G:0.23, T:0.40
Consensus pattern (81 bp):
GGGTATTTCGGTCATTTTACCCTAAGGGGGTAATTCGATCACTTTACCCATCGAGGATATTTTGG
TAATTGTATCCATCGA
Found at i:24123002 original size:27 final size:27
Alignment explanation
Indices: 24122893--24123114 Score: 146
Period size: 27 Copynumber: 8.3 Consensus size: 27
24122883 TCTCGGTCCC
* *
24122893 TTTACCCCAT-GAGAGTATTTTGGTCAT
1 TTTA-CCCATCGAGGGTATTTTGGTAAT
* * * ** *
24122920 TGTATCCTTCGAGGGTATTTCAGTCAT
1 TTTACCCATCGAGGGTATTTTGGTAAT
* * * * * *
24122947 TTTACCC-TGTGGGGGTAATTCGATCAT
1 TTTACCCAT-CGAGGGTATTTTGGTAAT
*
24122974 TTTACCCATCGAGGATATTTTGGTAAT
1 TTTACCCATCGAGGGTATTTTGGTAAT
*** *
24123001 TTTATTGATCGAGGGTATTTCGGTAAT
1 TTTACCCATCGAGGGTATTTTGGTAAT
* * * *
24123028 TTTACCTACCAAGGGTATTTTAGTAAT
1 TTTACCCATCGAGGGTATTTTGGTAAT
* *
24123055 TTTACCCAT--AGGGTATTTTTGTAGT
1 TTTACCCATCGAGGGTATTTTGGTAAT
** *
24123080 TTTACCCATTTAGGGTATTTCGGTAAT
1 TTTACCCATCGAGGGTATTTTGGTAAT
24123107 TTTACCCA
1 TTTACCCA
24123115 CGAATTGCAC
Statistics
Matches: 151, Mismatches: 39, Indels: 10
0.75 0.19 0.05
Matches are distributed among these distances:
25 23 0.15
26 4 0.03
27 123 0.81
28 1 0.01
ACGTcount: A:0.23, C:0.16, G:0.20, T:0.42
Consensus pattern (27 bp):
TTTACCCATCGAGGGTATTTTGGTAAT
Found at i:24127023 original size:256 final size:260
Alignment explanation
Indices: 24126563--24127072 Score: 843
Period size: 256 Copynumber: 2.0 Consensus size: 260
24126553 TTGAACAAAT
*
24126563 GAAGAAAAATTTTTTGTATTTAAGACAAGGAAGAATGTTTGTGATGAAGTACAAGCATGACATGA
1 GAAGAAAAATTTTTTGTATTTAAGACAAGAAAGAATGTTTGTGATGAAGTACAA-CATGACATGA
* *
24126628 ATTTGTCAGACTTAGCCGTTATGCTAAAACCATGTTTCAAATAAAGAAAGAAATGTGTAATAAAT
65 ATTTATCAAACTTAGCCGTTATGCTAAAACCATGTTTCAAATAAAGAAAGAAATGTGTAATAAAT
24126693 TTGAATAGAGGTTAAAAGATAAGATTCATGCTTTAATAGCAGCTTTTGAATGCAACAGTTTAGTA
130 TTGAATAGAGGTTAAAAGATAAGATTCATGCTTTAATAGCAGCTTTTGAATGCAACAGTTTAGTA
24126758 GCCATGACAGCCAAAGCTCA-TAAGATGGAAACTATTATTAGAGAAAAAAGTAGAAATTTAGAGA
195 GCCATGACAGCCAAAGCTCAGT-AGATGGAAACTATTATTAGAGAAAAAAGTAGAAATTTAGAGA
24126822 CA
259 CA
24126824 GAAGAAAGAA-TTTTTGTATTTAAGACAAGAAAGAATGTTTGTGATGAAGTAC-A-A-G-CATGA
1 GAAGAAA-AATTTTTTGTATTTAAGACAAGAAAGAATGTTTGTGATGAAGTACAACATGACATGA
* *
24126884 ATTTATCAAACTTAGCCGTTATGCTAAAACCATGTTTCTAATAAAGAAGGAAATGTGTAATAAAT
65 ATTTATCAAACTTAGCCGTTATGCTAAAACCATGTTTCAAATAAAGAAAGAAATGTGTAATAAAT
* * *
24126949 TTGAATAGGGGTTAAAAGATGAGATTCATGCTTTAATAGCAGCTTTTGAATGCAAGAGTTTAGTA
130 TTGAATAGAGGTTAAAAGATAAGATTCATGCTTTAATAGCAGCTTTTGAATGCAACAGTTTAGTA
* * * *
24127014 GCCATGACAGCTAAAGCTCAGTAGATGGAAACTATTATTAGATACAGAAGTAGAAATTT
195 GCCATGACAGCCAAAGCTCAGTAGATGGAAACTATTATTAGAGAAAAAAGTAGAAATTT
24127073 TGAAAGAAAA
Statistics
Matches: 235, Mismatches: 12, Indels: 9
0.92 0.05 0.04
Matches are distributed among these distances:
256 181 0.77
257 2 0.01
258 1 0.00
260 1 0.00
261 48 0.20
262 2 0.01
ACGTcount: A:0.41, C:0.10, G:0.20, T:0.29
Consensus pattern (260 bp):
GAAGAAAAATTTTTTGTATTTAAGACAAGAAAGAATGTTTGTGATGAAGTACAACATGACATGAA
TTTATCAAACTTAGCCGTTATGCTAAAACCATGTTTCAAATAAAGAAAGAAATGTGTAATAAATT
TGAATAGAGGTTAAAAGATAAGATTCATGCTTTAATAGCAGCTTTTGAATGCAACAGTTTAGTAG
CCATGACAGCCAAAGCTCAGTAGATGGAAACTATTATTAGAGAAAAAAGTAGAAATTTAGAGACA
Found at i:24131367 original size:92 final size:93
Alignment explanation
Indices: 24131204--24131382 Score: 315
Period size: 92 Copynumber: 1.9 Consensus size: 93
24131194 CGCAGGAGCA
* * *
24131204 ATTCGAGTGCATAGAAATTGAATCCACATTTTTGTTACAGGAAACATTATTTCTTGATTAGATGA
1 ATTCAAGTGCACAGAAATTGAATCCACATTTTTGTTACAGGAAACATTATTGCTTGATTAGATGA
*
24131269 AGTTGGGATATCAGTACCTGGGGCGAAC
66 AGTTGGGATATCAATACCTGGGGCGAAC
24131297 ATTCAAGTGCACAGAAATTGAATCCACATTTTT-TTACAGGAAACATTATTGCTTGATTAGATGA
1 ATTCAAGTGCACAGAAATTGAATCCACATTTTTGTTACAGGAAACATTATTGCTTGATTAGATGA
24131361 AGTTGGGATATCAATACCTGGG
66 AGTTGGGATATCAATACCTGGG
24131383 CGACACTTCC
Statistics
Matches: 82, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 51 0.62
93 31 0.38
ACGTcount: A:0.32, C:0.14, G:0.21, T:0.32
Consensus pattern (93 bp):
ATTCAAGTGCACAGAAATTGAATCCACATTTTTGTTACAGGAAACATTATTGCTTGATTAGATGA
AGTTGGGATATCAATACCTGGGGCGAAC
Found at i:24134532 original size:13 final size:13
Alignment explanation
Indices: 24134516--24134552 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
24134506 ATACATAATA
24134516 GTTATATGAAATG
1 GTTATATGAAATG
* *
24134529 GTTATGTGAATTG
1 GTTATATGAAATG
24134542 GTTATATGAAA
1 GTTATATGAAA
24134553 ATATATGTAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.24, T:0.41
Consensus pattern (13 bp):
GTTATATGAAATG
Found at i:24135503 original size:24 final size:24
Alignment explanation
Indices: 24135446--24135490 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
24135436 AAGTCATTTC
*
24135446 GGCTA-CACACGGCCTGGGACAGA
1 GGCTATCACACAGCCTGGGACAGA
24135469 GGCTATCACACAGCCTGGGACA
1 GGCTATCACACAGCCTGGGACA
24135491 CGGTCTGTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 5 0.25
24 15 0.75
ACGTcount: A:0.27, C:0.31, G:0.31, T:0.11
Consensus pattern (24 bp):
GGCTATCACACAGCCTGGGACAGA
Found at i:24135831 original size:11 final size:12
Alignment explanation
Indices: 24135800--24135834 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
24135790 CATTGATTTA
*
24135800 TGATATTTAAAT
1 TGATTTTTAAAT
24135812 TGATTTTTAAAT
1 TGATTTTTAAAT
24135824 TG-TTTTTAAAT
1 TGATTTTTAAAT
24135835 ATTATTGAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 9 0.41
12 13 0.59
ACGTcount: A:0.34, C:0.00, G:0.09, T:0.57
Consensus pattern (12 bp):
TGATTTTTAAAT
Found at i:24139494 original size:21 final size:21
Alignment explanation
Indices: 24139465--24139505 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
24139455 AATACCTAGT
*
24139465 AAAAGGTATTGATACTTTTTA
1 AAAACGTATTGATACTTTTTA
24139486 AAAACGTATTGATACTTTTT
1 AAAACGTATTGATACTTTTT
24139506 GTAATTGATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.37, C:0.07, G:0.12, T:0.44
Consensus pattern (21 bp):
AAAACGTATTGATACTTTTTA
Found at i:24147789 original size:27 final size:27
Alignment explanation
Indices: 24147536--24147787 Score: 276
Period size: 27 Copynumber: 9.3 Consensus size: 27
24147526 GTAATGGGTC
24147536 TAAAATGACCGAAATACCCTC-AGAGGG
1 TAAAATGACCGAAATACCCTCGA-AGGG
* *
24147563 TAAAATAACCAAAATACCCTCGAAGGG
1 TAAAATGACCGAAATACCCTCGAAGGG
* *
24147590 TAAAGTGACCAAAATACCCTCGAAGGG
1 TAAAATGACCGAAATACCCTCGAAGGG
* * * * *
24147617 TCAAATAACTGAAATACCCCCGAAAGG
1 TAAAATGACCGAAATACCCTCGAAGGG
* *
24147644 TAAAATGACCAAAATACCCTCTAAGGG
1 TAAAATGACCGAAATACCCTCGAAGGG
* *
24147671 TAAAATGATCGAAATACCCTCGCAA-CG
1 TAAAATGACCGAAATACCCTCG-AAGGG
* ** * *
24147698 TAGAATGACTAAAAAACTCTCGAAGGG
1 TAAAATGACCGAAATACCCTCGAAGGG
*
24147725 TAAAATGACCGAAATACCCTCGTAGGG
1 TAAAATGACCGAAATACCCTCGAAGGG
*
24147752 TAAAATGACTGAAATATCCCT-GAAGGG
1 TAAAATGACCGAAATA-CCCTCGAAGGG
24147779 TAAAATGAC
1 TAAAATGAC
24147788 TGTTATACCC
Statistics
Matches: 184, Mismatches: 37, Indels: 8
0.80 0.16 0.03
Matches are distributed among these distances:
26 2 0.01
27 175 0.95
28 7 0.04
ACGTcount: A:0.43, C:0.21, G:0.19, T:0.17
Consensus pattern (27 bp):
TAAAATGACCGAAATACCCTCGAAGGG
Found at i:24148004 original size:26 final size:26
Alignment explanation
Indices: 24147970--24148037 Score: 75
Period size: 26 Copynumber: 2.6 Consensus size: 26
24147960 CATATACTGC
* *
24147970 TACTAGCAGCTTTGCTGTG-TTACTAT
1 TACTGGCAGCTTTGCTG-GATCACTAT
* *
24147996 TAGTGGCAGCTTTGTTGGATCACTAT
1 TACTGGCAGCTTTGCTGGATCACTAT
*
24148022 TACTGGTAGCTTTGCT
1 TACTGGCAGCTTTGCT
24148038 ACGATATTGG
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
25 1 0.03
26 33 0.97
ACGTcount: A:0.18, C:0.18, G:0.24, T:0.41
Consensus pattern (26 bp):
TACTGGCAGCTTTGCTGGATCACTAT
Found at i:24148190 original size:28 final size:28
Alignment explanation
Indices: 24148150--24148204 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
24148140 CATTGTACTG
24148150 TTACTGTATTGGGCTAAGGCCCACACTA
1 TTACTGTATTGGGCTAAGGCCCACACTA
*
24148178 TTACTGTATTGGGCTTAGGCCCACACT
1 TTACTGTATTGGGCTAAGGCCCACACT
24148205 GTTGTATACT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.31
Consensus pattern (28 bp):
TTACTGTATTGGGCTAAGGCCCACACTA
Found at i:24156412 original size:27 final size:27
Alignment explanation
Indices: 24156372--24156595 Score: 197
Period size: 27 Copynumber: 8.3 Consensus size: 27
24156362 GTAATGGGCC
*
24156372 TAAAATGA-TCGAAATACCCTTGAAGGG
1 TAAAATGACT-GAAATACCCTCGAAGGG
24156399 TAAAATGACTGAAATACCC-CTGAAGGG
1 TAAAATGACTGAAATACCCTC-GAAGGG
* * *
24156426 TAAAGTGA-TCGGAATACCCTCAAAGGG
1 TAAAATGACT-GAAATACCCTCGAAGGG
* * * *
24156453 TAAAATAACTGAAATACCCCCAAAGGT
1 TAAAATGACTGAAATACCCTCGAAGGG
*
24156480 TAAAATGACTGAAATACCCTCGCAGGG
1 TAAAATGACTGAAATACCCTCGAAGGG
* * *
24156507 TAGAATGAC-CAAGAAACCCTCGAAGGG
1 TAAAATGACTGAA-ATACCCTCGAAGGG
* * * *
24156534 TAAAATGACCGAAATACCCTAGCATGG
1 TAAAATGACTGAAATACCCTCGAAGGG
* * *
24156561 TAAAATGACCGAAATA-CATCTTAAGGG
1 TAAAATGACTGAAATACCCTC-GAAGGG
24156588 TAAAATGA
1 TAAAATGA
24156596 ATGTTATACC
Statistics
Matches: 160, Mismatches: 29, Indels: 16
0.78 0.14 0.08
Matches are distributed among these distances:
26 5 0.03
27 150 0.94
28 5 0.03
ACGTcount: A:0.42, C:0.19, G:0.21, T:0.19
Consensus pattern (27 bp):
TAAAATGACTGAAATACCCTCGAAGGG
Found at i:24156496 original size:54 final size:54
Alignment explanation
Indices: 24156372--24156595 Score: 218
Period size: 54 Copynumber: 4.1 Consensus size: 54
24156362 GTAATGGGCC
* *
24156372 TAAAATGATCGAAATACCCTTGAAGGGTAAAATGACTGAAATACCCCTGAAGGG
1 TAAAATGATCGAAATACCCTCGAAGGGTAAAATGACTGAAATACCCCCGAAGGG
* * * * * *
24156426 TAAAGTGATCGGAATACCCTCAAAGGGTAAAATAACTGAAATACCCCCAAAGGT
1 TAAAATGATCGAAATACCCTCGAAGGGTAAAATGACTGAAATACCCCCGAAGGG
* * * * *
24156480 TAAAATGA-CTGAAATACCCTCGCAGGGTAGAATGAC-CAAGAAACCCTCGAAGGG
1 TAAAATGATC-GAAATACCCTCGAAGGGTAAAATGACTGAA-ATACCCCCGAAGGG
* * * * * ** **
24156534 TAAAATGACCGAAATACCCTAGCATGGTAAAATGACCGAAATACATCTTAAGGG
1 TAAAATGATCGAAATACCCTCGAAGGGTAAAATGACTGAAATACCCCCGAAGGG
24156588 TAAAATGA
1 TAAAATGA
24156596 ATGTTATACC
Statistics
Matches: 137, Mismatches: 29, Indels: 8
0.79 0.17 0.05
Matches are distributed among these distances:
53 3 0.02
54 131 0.96
55 3 0.02
ACGTcount: A:0.42, C:0.19, G:0.21, T:0.19
Consensus pattern (54 bp):
TAAAATGATCGAAATACCCTCGAAGGGTAAAATGACTGAAATACCCCCGAAGGG
Found at i:24156595 original size:81 final size:79
Alignment explanation
Indices: 24156372--24156595 Score: 220
Period size: 81 Copynumber: 2.8 Consensus size: 79
24156362 GTAATGGGCC
* * *
24156372 TAAAATGATCGAAATACCCTTG-AAGGGTAAAATGACTGAAATACCCCTGAAGGGTAAAGTGATC
1 TAAAATGACCGAAATACCC-TGCAA-GGTAAAATGACTGAAATA-CCCTGAAGGGTAAAATGACC
*
24156436 GGAATACCCTCAAAGGG
63 AGAATACCCTCAAAGGG
* * * * *
24156453 TAAAATAACTGAAATACCC-CCAAAGGTTAAAATGACTGAAATACCCTCGCAGGGTAGAATGACC
1 TAAAATGACCGAAATACCCTGC-AAGG-TAAAATGACTGAAATACCCT-GAAGGGTAAAATGACC
*
24156517 AAGAA-ACCCTCGAAGGG
63 -AGAATACCCTCAAAGGG
* * * *
24156534 TAAAATGACCGAAATACCCTAGCATGGTAAAATGACCGAAATACATCTTAAGGGTAAAATGA
1 TAAAATGACCGAAATACCCT-GCAAGGTAAAATGACTGAAATAC-CCTGAAGGGTAAAATGA
24156596 ATGTTATACC
Statistics
Matches: 116, Mismatches: 19, Indels: 16
0.77 0.13 0.11
Matches are distributed among these distances:
80 6 0.05
81 101 0.87
82 8 0.07
83 1 0.01
ACGTcount: A:0.42, C:0.19, G:0.21, T:0.19
Consensus pattern (79 bp):
TAAAATGACCGAAATACCCTGCAAGGTAAAATGACTGAAATACCCTGAAGGGTAAAATGACCAGA
ATACCCTCAAAGGG
Found at i:24156910 original size:28 final size:28
Alignment explanation
Indices: 24156844--24156916 Score: 92
Period size: 28 Copynumber: 2.6 Consensus size: 28
24156834 GTACTATTAC
*
24156844 TGTATTGGGCTAAGGCCCGCACTGTTAT
1 TGTATTGGGCTAAGGCCCACACTGTTAT
* * *
24156872 TATATTTGGCTAAGGCCCACACTGTTGT
1 TGTATTGGGCTAAGGCCCACACTGTTAT
* *
24156900 TGTATAGGGCTCAGGCC
1 TGTATTGGGCTAAGGCC
24156917 TAGACTACTA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.19, C:0.22, G:0.27, T:0.32
Consensus pattern (28 bp):
TGTATTGGGCTAAGGCCCACACTGTTAT
Found at i:24165338 original size:40 final size:39
Alignment explanation
Indices: 24165260--24165503 Score: 301
Period size: 40 Copynumber: 6.1 Consensus size: 39
24165250 TACTATTTGG
* * *
24165260 TTCAGGGTTACC-AAGGTACAAACAGGGCACGCATGTGCA
1 TTCAGGGGTACCGAA-GTACAAACAGGGCACGTAAGTGCA
* *
24165299 TTAAGGGGTACCGAAGTACAAACACGGGCATGTAAGTGCA
1 TTCAGGGGTACCGAAGTACAAACA-GGGCACGTAAGTGCA
* * * *
24165339 TTCAGGGGTATCGAAGTATAAACAGGGGCACATATGTGCA
1 TTCAGGGGTACCGAAGTACAAACA-GGGCACGTAAGTGCA
* * *
24165379 TTCAAGGGTACCAAAGTACAAACAGGGGCACGTATGTGCA
1 TTCAGGGGTACCGAAGTACAAACA-GGGCACGTAAGTGCA
*
24165419 TTCAGGGGTACCAAAGTACAAACAGAGGCACGTAAGTGCA
1 TTCAGGGGTACCGAAGTACAAACAG-GGCACGTAAGTGCA
*
24165459 TTCAGGGGTGCCGAAGTACAAACAGGGACACGTAAGTGCA
1 TTCAGGGGTACCGAAGTACAAACAGGG-CACGTAAGTGCA
24165499 TTCAG
1 TTCAG
24165504 CAATAATTAT
Statistics
Matches: 180, Mismatches: 21, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 22 0.12
40 158 0.88
ACGTcount: A:0.34, C:0.19, G:0.29, T:0.18
Consensus pattern (39 bp):
TTCAGGGGTACCGAAGTACAAACAGGGCACGTAAGTGCA
Found at i:24165417 original size:120 final size:120
Alignment explanation
Indices: 24165263--24165502 Score: 349
Period size: 120 Copynumber: 2.0 Consensus size: 120
24165253 TATTTGGTTC
* *
24165263 AGGGTTACCAAGGTACAAACAGGGCACGCATGTGCATTAAGGGGTACCGAAGTACAAACACG-GG
1 AGGGTTACCAAAGTACAAACAGGGCACGCATGTGCATTAAGGGGTACCAAAGTACAAACA-GAGG
* * * * *
24165327 CATGTAAGTGCATTCAGGGGTATCGAAGTATAAACAGGGGCACATATGTGCATTCA
65 CACGTAAGTGCATTCAGGGGTACCGAAGTACAAACAGGGACACATAAGTGCATTCA
* *
24165383 AGGG-TACCAAAGTACAAACAGGGGCACGTATGTGCATTCAGGGGTACCAAAGTACAAACAGAGG
1 AGGGTTACCAAAGTACAAACA-GGGCACGCATGTGCATTAAGGGGTACCAAAGTACAAACAGAGG
* *
24165447 CACGTAAGTGCATTCAGGGGTGCCGAAGTACAAACAGGGACACGTAAGTGCATTCA
65 CACGTAAGTGCATTCAGGGGTACCGAAGTACAAACAGGGACACATAAGTGCATTCA
24165503 GCAATAATTA
Statistics
Matches: 107, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
119 16 0.15
120 91 0.85
ACGTcount: A:0.34, C:0.19, G:0.29, T:0.17
Consensus pattern (120 bp):
AGGGTTACCAAAGTACAAACAGGGCACGCATGTGCATTAAGGGGTACCAAAGTACAAACAGAGGC
ACGTAAGTGCATTCAGGGGTACCGAAGTACAAACAGGGACACATAAGTGCATTCA
Found at i:24171575 original size:26 final size:26
Alignment explanation
Indices: 24171539--24171599 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
24171529 CTGTAAGTGT
* *
24171539 TCTGACACTGATACATGCTATGATAA
1 TCTGAAACTGATAAATGCTATGATAA
* *
24171565 TCTGAAACTGATAAATGTTATGATAT
1 TCTGAAACTGATAAATGCTATGATAA
24171591 TCTGAAACT
1 TCTGAAACT
24171600 ATTGTAGGTA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34
Consensus pattern (26 bp):
TCTGAAACTGATAAATGCTATGATAA
Found at i:24179962 original size:31 final size:31
Alignment explanation
Indices: 24179927--24180020 Score: 125
Period size: 31 Copynumber: 3.0 Consensus size: 31
24179917 ATGCACAAAG
* *
24179927 ACTTATCATAGAGAGCTCACATAGGGAGCTT
1 ACTTATCACAGAGAGCTCGCATAGGGAGCTT
* * * *
24179958 ACTTATCACAAAGAGATCGTATATGGAGCTT
1 ACTTATCACAGAGAGCTCGCATAGGGAGCTT
*
24179989 ACTTATCACAGAGAGCTTGCATAGGGAGCTT
1 ACTTATCACAGAGAGCTCGCATAGGGAGCTT
24180020 A
1 A
24180021 TTTGAAAATA
Statistics
Matches: 52, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 52 1.00
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (31 bp):
ACTTATCACAGAGAGCTCGCATAGGGAGCTT
Found at i:24182602 original size:17 final size:17
Alignment explanation
Indices: 24182567--24182599 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
24182557 TTAAGATAAG
*
24182567 TATTAAATTTAATTTAA
1 TATTAAATTTAATTAAA
24182584 TATTAAATTT-ATTAAA
1 TATTAAATTTAATTAAA
24182600 ATAATATTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (17 bp):
TATTAAATTTAATTAAA
Found at i:24186595 original size:41 final size:40
Alignment explanation
Indices: 24186550--24186658 Score: 130
Period size: 40 Copynumber: 2.7 Consensus size: 40
24186540 GGTGCTAATA
* *
24186550 GAAAAATGCCACAATAA-TTAGAGCAATAGCGGTGTTTATGG
1 GAAAAATGCCACAA-AAGGTA-AGCAATAGCGGCGTTTATGG
**
24186591 GAAAAATGCTGCAAAAGGTAAGCAATAGCGGCGTTTATGG
1 GAAAAATGCCACAAAAGGTAAGCAATAGCGGCGTTTATGG
* * *
24186631 GGAAAACGCCGCAAAAGGTAAGCAATAG
1 GAAAAATGCCACAAAAGGTAAGCAATAG
24186659 TGGTCGTAAA
Statistics
Matches: 60, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
40 46 0.77
41 14 0.23
ACGTcount: A:0.40, C:0.14, G:0.28, T:0.18
Consensus pattern (40 bp):
GAAAAATGCCACAAAAGGTAAGCAATAGCGGCGTTTATGG
Found at i:24186619 original size:40 final size:40
Alignment explanation
Indices: 24186571--24186658 Score: 140
Period size: 40 Copynumber: 2.2 Consensus size: 40
24186561 CAATAATTAG
* * *
24186571 AGCAATAGCGGTGTTTATGGGAAAAATGCTGCAAAAGGTA
1 AGCAATAGCGGCGTTTATGGGAAAAACGCCGCAAAAGGTA
*
24186611 AGCAATAGCGGCGTTTATGGGGAAAACGCCGCAAAAGGTA
1 AGCAATAGCGGCGTTTATGGGAAAAACGCCGCAAAAGGTA
24186651 AGCAATAG
1 AGCAATAG
24186659 TGGTCGTAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.38, C:0.14, G:0.31, T:0.18
Consensus pattern (40 bp):
AGCAATAGCGGCGTTTATGGGAAAAACGCCGCAAAAGGTA
Found at i:24186805 original size:48 final size:48
Alignment explanation
Indices: 24186750--24186847 Score: 144
Period size: 48 Copynumber: 2.0 Consensus size: 48
24186740 TTCTCAATCA
**
24186750 TTTCTTTGCTTGAAAC-CTTAAAATCCTGTCCCTTTTCTTTCCTAGACT
1 TTTCTTTGCTTGAAACTC-TAAAATCCCATCCCTTTTCTTTCCTAGACT
* *
24186798 TTTCTTTGCTTGAAACTCTAAAATCCCATCCCTTTTCTTTCTTAGTCT
1 TTTCTTTGCTTGAAACTCTAAAATCCCATCCCTTTTCTTTCCTAGACT
24186846 TT
1 TT
24186848 AAATTACTTG
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
48 44 0.98
49 1 0.02
ACGTcount: A:0.18, C:0.27, G:0.07, T:0.48
Consensus pattern (48 bp):
TTTCTTTGCTTGAAACTCTAAAATCCCATCCCTTTTCTTTCCTAGACT
Found at i:24186858 original size:48 final size:48
Alignment explanation
Indices: 24186758--24186860 Score: 118
Period size: 48 Copynumber: 2.1 Consensus size: 48
24186748 CATTTCTTTG
** *** *
24186758 CTTGAAACCTTAAAATCCTGTCCCTTTTCTTTCCTAGACTTTTCTTTG
1 CTTGAAACCTTAAAATCCCATCCCTTTTCTTTCCTAGACTTTAAATTA
* *
24186806 CTTGAAA-CTCTAAAATCCCATCCCTTTTCTTTCTTAGTCTTTAAATTA
1 CTTGAAACCT-TAAAATCCCATCCCTTTTCTTTCCTAGACTTTAAATTA
24186854 CTTGAAA
1 CTTGAAA
24186861 AAAATATACA
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
47 2 0.04
48 44 0.96
ACGTcount: A:0.24, C:0.25, G:0.07, T:0.44
Consensus pattern (48 bp):
CTTGAAACCTTAAAATCCCATCCCTTTTCTTTCCTAGACTTTAAATTA
Found at i:24190329 original size:72 final size:71
Alignment explanation
Indices: 24190118--24190337 Score: 244
Period size: 71 Copynumber: 3.1 Consensus size: 71
24190108 TTTAATTATC
* ** *
24190118 AAGTAAAATCGTTTATTTAATTATGTGTTTTTAAAAAAGGTTAATTTAGTTCAATTTATTAAGTT
1 AAGTAAAAACGTTTATTTAATTA-GAATTTTT-AAAAAGGTTAATTTAGTTCAATTTATTGAGTT
24190183 TTGATATT
64 TTGATATT
** * * * * * ** **
24190191 AAGCGAAACCGTTTATTTAGTTATACATTTTT-AGAAGCTTAATTTAGTTTGATTTATTGAAATT
1 AAGTAAAAACGTTTATTTAATTAGA-ATTTTTAAAAAGGTTAATTTAGTTCAATTTATTGAGTTT
24190255 TGATATT
65 TGATATT
* *
24190262 AAGTAAAAACGTTTGTTCAATTAGGAATTTTTAAAAAGGTTAATTTAGTTCAATTTATTGAGTTT
1 AAGTAAAAACGTTTATTTAATTA-GAATTTTTAAAAAGGTTAATTTAGTTCAATTTATTGAGTTT
24190327 TGATATT
65 TGATATT
24190334 AAGT
1 AAGT
24190338 GGAACCATTT
Statistics
Matches: 117, Mismatches: 27, Indels: 7
0.77 0.18 0.05
Matches are distributed among these distances:
71 55 0.47
72 38 0.32
73 24 0.21
ACGTcount: A:0.35, C:0.05, G:0.14, T:0.46
Consensus pattern (71 bp):
AAGTAAAAACGTTTATTTAATTAGAATTTTTAAAAAGGTTAATTTAGTTCAATTTATTGAGTTTT
GATATT
Found at i:24190383 original size:99 final size:99
Alignment explanation
Indices: 24190262--24190450 Score: 263
Period size: 99 Copynumber: 1.9 Consensus size: 99
24190252 ATTTGATATT
* * *
24190262 AAGTAAAAACGTTTGTTCAATTAGGAATTTTT-AAAAAGGTTAATTTAGTTCAATTTATTGAGTT
1 AAGTAAAAACGCTTGTTAAATTAGGAATTTTTGAAAAA-GTTAATTTAGTTCAATTTATTGAATT
* *
24190326 TTGATATTAAGTGGAACCATTTATTCTGTTATACA
65 TTGATATGAAGTAGAACCATTTATTCTGTTATACA
* * **
24190361 AAGTAAAACCGCTTGTTAAATTATGCGTTTTTGAAAAAGTTAATTTAGTTCAATTTATTGAATTT
1 AAGTAAAAACGCTTGTTAAATTAGGAATTTTTGAAAAAGTTAATTTAGTTCAATTTATTGAATTT
**
24190426 TGATATGAAGTAGAACTGTTTATTC
66 TGATATGAAGTAGAACCATTTATTC
24190451 AATTATGTGT
Statistics
Matches: 78, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
99 73 0.94
100 5 0.06
ACGTcount: A:0.35, C:0.07, G:0.15, T:0.42
Consensus pattern (99 bp):
AAGTAAAAACGCTTGTTAAATTAGGAATTTTTGAAAAAGTTAATTTAGTTCAATTTATTGAATTT
TGATATGAAGTAGAACCATTTATTCTGTTATACA
Found at i:24190464 original size:72 final size:71
Alignment explanation
Indices: 24190379--24190594 Score: 204
Period size: 72 Copynumber: 3.0 Consensus size: 71
24190369 CCGCTTGTTA
* *
24190379 AATTATGCGTTTTTGAAAAAGTTAATTTAGTTCAATTTATTGAATTTTGATATGAAGTAGAACTG
1 AATTATGTGTTTTTGAAAAAGTTAATTTAGTTCAATTTATTGAATTTTGATATTAAGTA-AACTG
24190444 TTTATTC
65 TTTATTC
* * * * * * *
24190451 AATTATGTGTTTTT-AAAAAGGCTATTTTAGCTCAATTCATTGATTTTTGGTATTAAGTAAAACC
1 AATTATGTGTTTTTGAAAAA-GTTAATTTAGTTCAATTTATTGAATTTTGATATTAAGT-AAACT
24190515 GTTTATTC
64 GTTTATTC
* * * * ** * *
24190523 AAGTTATATG-TTTTG-AGAAGATTAAATTAATTTGATTTATTGAGTTTTGATATTAAGTAAAAT
1 AA-TTATGTGTTTTTGAAAAAG-TTAATTTAGTTCAATTTATTGAATTTTGATATTAAGTAAACT
24190586 CGTTTATTC
64 -GTTTATTC
24190595 GGTAATATTA
Statistics
Matches: 115, Mismatches: 23, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
71 9 0.08
72 99 0.86
73 7 0.06
ACGTcount: A:0.33, C:0.06, G:0.15, T:0.46
Consensus pattern (71 bp):
AATTATGTGTTTTTGAAAAAGTTAATTTAGTTCAATTTATTGAATTTTGATATTAAGTAAACTGT
TTATTC
Found at i:24190887 original size:19 final size:18
Alignment explanation
Indices: 24190865--24190908 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 18
24190855 TTTATTATTT
24190865 ATTTTATTTTTGATTCTAA
1 ATTTTATTTTT-ATTCTAA
*
24190884 ATTTTTATTTTTATTTTAA
1 A-TTTTATTTTTATTCTAA
*
24190903 AATTTA
1 ATTTTA
24190909 AGATAACTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
18 4 0.18
19 8 0.36
20 10 0.45
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (18 bp):
ATTTTATTTTTATTCTAA
Found at i:24194501 original size:50 final size:50
Alignment explanation
Indices: 24194423--24194665 Score: 342
Period size: 50 Copynumber: 4.8 Consensus size: 50
24194413 ATTTGGGTAA
24194423 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
* * *
24194473 AGAGGTCCCATGTAAGACCATGTATGGGACATGGTGTTGGCACCAAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
* *
24194523 AGAGGTCCCATGTTAGACCATGTCTGGGACATGGCGTTGGAACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
** * * *
24194573 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
** * * *
24194623 AGAACATCCCATGTAACACCATGTCTAGGACATGGCTTTGGCA
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA
24194666 TGTTATTATC
Statistics
Matches: 169, Mismatches: 23, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
50 137 0.81
51 32 0.19
ACGTcount: A:0.26, C:0.22, G:0.31, T:0.21
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
Found at i:24202071 original size:50 final size:50
Alignment explanation
Indices: 24201996--24202288 Score: 406
Period size: 50 Copynumber: 5.8 Consensus size: 50
24201986 ATTTGGGTAA
24201996 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
*
24202046 AGAGGTCCCATGTAAGATCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
* * * *
24202096 AGAGGTCACATGTAAGACCATGTCTAGGACATGGCATTGGCACCAAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
* *
24202146 AGAGGTCACATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
** * * * *
24202196 AGAGGTCCCCCGTAAGACCATGTTTGGGACATGGCATGGGCACCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
** * * * *
24202246 AGAACATCCTATGTAACACCATGTCTAGGACATGGCTTTGGCA
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA
24202289 TGTTATTATC
Statistics
Matches: 214, Mismatches: 28, Indels: 1
0.88 0.12 0.00
Matches are distributed among these distances:
50 184 0.86
51 30 0.14
ACGTcount: A:0.27, C:0.22, G:0.30, T:0.21
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
Done.