Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62811768
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 736185 characters in sequence are not A, C, G, or T
File 90 of 211
Found at i:24520699 original size:12 final size:12
Alignment explanation
Indices: 24520682--24520707 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
24520672 AAAAAATCCA
24520682 AAAGAATAAAAG
1 AAAGAATAAAAG
24520694 AAAGAATAAAAG
1 AAAGAATAAAAG
24520706 AA
1 AA
24520708 TATTGGCTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.15, T:0.08
Consensus pattern (12 bp):
AAAGAATAAAAG
Found at i:24524864 original size:104 final size:104
Alignment explanation
Indices: 24524684--24525010 Score: 545
Period size: 105 Copynumber: 3.2 Consensus size: 104
24524674 TGTATATAAA
** * * * *
24524684 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
24524748 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
24524788 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
24524853 TGAAATGTGAAAGAGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAG-GGGGTTGCTATGTGCTGATTCCCCCG
24524893 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
24524958 TGAAATGTGAAA-GGGGTTGCTATGTGCTGATTCCCCC-
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
24524995 AGGGG-TGCTGAGTGCT
1 AGGGGTTGCTAAGTGCT
24525011 CCAGTTCATG
Statistics
Matches: 214, Mismatches: 7, Indels: 7
0.94 0.03 0.03
Matches are distributed among these distances:
101 10 0.05
102 5 0.02
103 25 0.12
104 70 0.33
105 104 0.49
ACGTcount: A:0.18, C:0.20, G:0.31, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:24524903 original size:27 final size:27
Alignment explanation
Indices: 24524865--24524917 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
24524855 AAATGTGAAA
*
24524865 GAGGGGTTGCTATGTGCTGATTCCCCC
1 GAGGGGTTGCTAAGTGCTGATTCCCCC
24524892 GAGGGGTTGCTAAGTGCTGATTCCCC
1 GAGGGGTTGCTAAGTGCTGATTCCCC
24524918 GGTTCATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.13, C:0.25, G:0.34, T:0.28
Consensus pattern (27 bp):
GAGGGGTTGCTAAGTGCTGATTCCCCC
Found at i:24525072 original size:24 final size:25
Alignment explanation
Indices: 24525044--24525091 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
24525034 TGAAATGAAA
* *
24525044 GGGGTTG-TATGTGCTGATTCCCCC
1 GGGGTTGCTAAGTGATGATTCCCCC
24525068 GGGGTTGCTAAGTGATGATTCCCC
1 GGGGTTGCTAAGTGATGATTCCCC
24525092 GATTCAGTGG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.12, C:0.23, G:0.33, T:0.31
Consensus pattern (25 bp):
GGGGTTGCTAAGTGATGATTCCCCC
Found at i:24532408 original size:102 final size:104
Alignment explanation
Indices: 24532244--24532608 Score: 591
Period size: 102 Copynumber: 3.6 Consensus size: 104
24532234 TGTATATAAA
** * * *
24532244 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
24532308 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
24532347 AGGGGTTGCTAAGTGCTGATT-CCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
24532411 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
24532450 A-GGGTTGCTAAGTGCTGATTCCCCG-TTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
24532513 TGAAA--TGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* * *
24532550 AGGGGTTGCTAAGTGATGATTCCCCGATTCAGTGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
24532609 ATAACGGTTA
Statistics
Matches: 248, Mismatches: 9, Indels: 11
0.93 0.03 0.04
Matches are distributed among these distances:
100 33 0.13
101 23 0.09
102 162 0.65
103 30 0.12
ACGTcount: A:0.19, C:0.20, G:0.30, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:24534799 original size:13 final size:14
Alignment explanation
Indices: 24534771--24534799 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
24534761 ATTCTAATTC
24534771 AACTTTATTCAGAA
1 AACTTTATTCAGAA
24534785 AACTTTATT-AGAA
1 AACTTTATTCAGAA
24534798 AA
1 AA
24534800 TACATTTCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.48, C:0.10, G:0.07, T:0.34
Consensus pattern (14 bp):
AACTTTATTCAGAA
Found at i:24535350 original size:241 final size:241
Alignment explanation
Indices: 24534927--24535410 Score: 914
Period size: 241 Copynumber: 2.0 Consensus size: 241
24534917 ACAATCAACG
24534927 TATTAGCCTGTATTGCCAAAGTTTGCAGGTAATCTGCTATCTCTCGAATCTGAACCACAGCTTTT
1 TATTAGCCTGTATTGCCAAAGTTTGCAGGTAATCTGCTATCTCTCGAATCTGAACCACAGCTTTT
24534992 CCCATAATATGATCCCTGTTTCTAACTTGATTTTGAAAGTAATGAAGTTGCTCAGTCTGACGACT
66 CCCATAATATGATCCCTGTTTCTAACTTGATTTTGAAAGTAATGAAGTTGCTCAGTCTGACGACT
24535057 CTAATTTGCTTCCAGGTTCTCTATTCGGACCTCACAATTTCGCAATGTTGTTTCTAACTCTTCTA
131 CTAATTTGCTTCCAGGTTCTCTATTCGGACCTCACAATTTCGCAATGTTGTTTCTAACTCTTCTA
*
24535122 TTCTGCTTTTCATCTCTTCAATCTTGCTTAAACTTGCATTCAACTC
196 TTCTGCTCTTCATCTCTTCAATCTTGCTTAAACTTGCATTCAACTC
*
24535168 TATTAGCCTGTATTGCCAAAGTTTGCTGGTAATCTGCTATCTCTCGAATCTGAACCACAGCTTTT
1 TATTAGCCTGTATTGCCAAAGTTTGCAGGTAATCTGCTATCTCTCGAATCTGAACCACAGCTTTT
24535233 CCCATAATATGATCCCTGTTTCTAACTTGATTTTGAAAGTAATGAAGTTGCTCAGTCTGACGACT
66 CCCATAATATGATCCCTGTTTCTAACTTGATTTTGAAAGTAATGAAGTTGCTCAGTCTGACGACT
* *
24535298 CTAATTTGCTTCCAGGTTCTCTATTCGGACCTTACAATTTCGGAATGTTGTTTCTAACTCTTCTA
131 CTAATTTGCTTCCAGGTTCTCTATTCGGACCTCACAATTTCGCAATGTTGTTTCTAACTCTTCTA
* *
24535363 TTCTGCTCTTCATCTTTTCAATCTTGCTTAAACTTGCTTTCAACTC
196 TTCTGCTCTTCATCTCTTCAATCTTGCTTAAACTTGCATTCAACTC
24535409 TA
1 TA
24535411 ACACAGAATT
Statistics
Matches: 237, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
241 237 1.00
ACGTcount: A:0.23, C:0.24, G:0.14, T:0.40
Consensus pattern (241 bp):
TATTAGCCTGTATTGCCAAAGTTTGCAGGTAATCTGCTATCTCTCGAATCTGAACCACAGCTTTT
CCCATAATATGATCCCTGTTTCTAACTTGATTTTGAAAGTAATGAAGTTGCTCAGTCTGACGACT
CTAATTTGCTTCCAGGTTCTCTATTCGGACCTCACAATTTCGCAATGTTGTTTCTAACTCTTCTA
TTCTGCTCTTCATCTCTTCAATCTTGCTTAAACTTGCATTCAACTC
Found at i:24538790 original size:8 final size:8
Alignment explanation
Indices: 24538745--24538799 Score: 51
Period size: 9 Copynumber: 6.5 Consensus size: 8
24538735 ACAATTTGGC
24538745 ATAAAAT-
1 ATAAAATA
24538752 ATATAAATAA
1 ATA-AAAT-A
24538762 ATAAAATA
1 ATAAAATA
24538770 ATGAAAACT-
1 AT-AAAA-TA
24538779 ATAAAATA
1 ATAAAATA
24538787 ATAATAATA
1 ATAA-AATA
24538796 ATAA
1 ATAA
24538800 TAGTAACGAA
Statistics
Matches: 41, Mismatches: 0, Indels: 12
0.77 0.00 0.23
Matches are distributed among these distances:
7 4 0.10
8 15 0.37
9 18 0.44
10 4 0.10
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (8 bp):
ATAAAATA
Found at i:24539749 original size:8 final size:9
Alignment explanation
Indices: 24539729--24539766 Score: 53
Period size: 9 Copynumber: 4.3 Consensus size: 9
24539719 TCGTTTTCTT
24539729 TAAAATAAA
1 TAAAATAAA
24539738 TAAAAT-AA
1 TAAAATAAA
24539746 TAAAAATAAA
1 T-AAAATAAA
24539756 T-AAATAAA
1 TAAAATAAA
24539764 TAA
1 TAA
24539767 GCCAAAATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
8 11 0.42
9 12 0.46
10 3 0.12
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (9 bp):
TAAAATAAA
Found at i:24539773 original size:22 final size:22
Alignment explanation
Indices: 24539731--24539777 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
24539721 GTTTTCTTTA
*
24539731 AAATAAATAAAATAATAAAAAT
1 AAATAAATAAAATAACAAAAAT
*
24539753 AAATAAAT-AAATAAGCCAAAAT
1 AAATAAATAAAATAA-CAAAAAT
24539775 AAA
1 AAA
24539778 AAAAACTACC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 6 0.27
22 16 0.73
ACGTcount: A:0.74, C:0.04, G:0.02, T:0.19
Consensus pattern (22 bp):
AAATAAATAAAATAACAAAAAT
Found at i:24540152 original size:24 final size:23
Alignment explanation
Indices: 24540124--24540169 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
24540114 AATTCTGGGC
* *
24540124 TTTGGTTTTTTATATTTTTTTGTA
1 TTTGGTTTATTAT-TTTCTTTGTA
24540148 TTTGGTTTATTATTTTCTTTGT
1 TTTGGTTTATTATTTTCTTTGT
24540170 GTATGCGGGC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 8 0.40
24 12 0.60
ACGTcount: A:0.11, C:0.02, G:0.13, T:0.74
Consensus pattern (23 bp):
TTTGGTTTATTATTTTCTTTGTA
Found at i:24541391 original size:15 final size:15
Alignment explanation
Indices: 24541351--24541394 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 15
24541341 TTATCTTAAA
24541351 ATATGAATATGTGTGT
1 ATATG-ATATGTGTGT
* *
24541367 ATTGTGATATGTGTTT
1 A-TATGATATGTGTGT
24541383 ATATGATATGTG
1 ATATGATATGTG
24541395 ACTATTATGG
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
15 10 0.42
16 11 0.46
17 3 0.12
ACGTcount: A:0.27, C:0.00, G:0.25, T:0.48
Consensus pattern (15 bp):
ATATGATATGTGTGT
Found at i:24562265 original size:19 final size:20
Alignment explanation
Indices: 24562243--24562280 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
24562233 CAACTTTTGA
24562243 ACAAAAAATGGAA-CAAACT
1 ACAAAAAATGGAAGCAAACT
*
24562262 ACAAAAGATGGAAGCAAAC
1 ACAAAAAATGGAAGCAAAC
24562281 AAAAGCATAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.61, C:0.16, G:0.16, T:0.08
Consensus pattern (20 bp):
ACAAAAAATGGAAGCAAACT
Found at i:24568362 original size:24 final size:24
Alignment explanation
Indices: 24568330--24568386 Score: 87
Period size: 24 Copynumber: 2.4 Consensus size: 24
24568320 ATGGTGAAGT
*
24568330 CACTCAATAACGTTGTGGCCAAGC
1 CACTCAATAACATTGTGGCCAAGC
* *
24568354 CACTCAATAGCATTGTGGTCAAGC
1 CACTCAATAACATTGTGGCCAAGC
24568378 CACTCAATA
1 CACTCAATA
24568387 TCACAGACAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.32, C:0.28, G:0.18, T:0.23
Consensus pattern (24 bp):
CACTCAATAACATTGTGGCCAAGC
Found at i:24568425 original size:87 final size:87
Alignment explanation
Indices: 24568279--24568449 Score: 270
Period size: 87 Copynumber: 2.0 Consensus size: 87
24568269 ACACTCCACG
* * * *
24568279 TTGTGGCCAAGCCACTCAATATCGCAGACAAGATGCACATTATGGTGAAGTCACTCAATAACGTT
1 TTGTGGCCAAGCCACTCAATATCACAGACAAGATGCACACTATGGTCAAGCCACTCAATAACGTT
*
24568344 GTGGCCAAGCCACTCAATAGCA
66 GTGACCAAGCCACTCAATAGCA
* * *
24568366 TTGTGGTCAAGCCACTCAATATCACAGACAAGCTGCACGCTATGGTCAAGCCACTCAATAACGTT
1 TTGTGGCCAAGCCACTCAATATCACAGACAAGATGCACACTATGGTCAAGCCACTCAATAACGTT
24568431 GTGACCAAGCCACTCAATA
66 GTGACCAAGCCACTCAATA
24568450 TTGCAGTAAA
Statistics
Matches: 76, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
87 76 1.00
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.22
Consensus pattern (87 bp):
TTGTGGCCAAGCCACTCAATATCACAGACAAGATGCACACTATGGTCAAGCCACTCAATAACGTT
GTGACCAAGCCACTCAATAGCA
Found at i:24569495 original size:11 final size:11
Alignment explanation
Indices: 24569481--24569517 Score: 65
Period size: 11 Copynumber: 3.4 Consensus size: 11
24569471 TGGTCTGGCA
24569481 GTGGTGAAGTG
1 GTGGTGAAGTG
*
24569492 GTGGTGCAGTG
1 GTGGTGAAGTG
24569503 GTGGTGAAGTG
1 GTGGTGAAGTG
24569514 GTGG
1 GTGG
24569518 AGAATGATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.14, C:0.03, G:0.57, T:0.27
Consensus pattern (11 bp):
GTGGTGAAGTG
Found at i:24577905 original size:13 final size:13
Alignment explanation
Indices: 24577887--24577913 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
24577877 TTTTTCAGAG
24577887 TACGAAAGGTATA
1 TACGAAAGGTATA
24577900 TACGAAAGGTATA
1 TACGAAAGGTATA
24577913 T
1 T
24577914 TTTTCAAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.07, G:0.22, T:0.26
Consensus pattern (13 bp):
TACGAAAGGTATA
Found at i:24583141 original size:137 final size:135
Alignment explanation
Indices: 24582893--24583196 Score: 430
Period size: 137 Copynumber: 2.2 Consensus size: 135
24582883 TTACACTGTT
* * * ** * *
24582893 ATGACCAAAATACCTCCATAGGATAAAATGACCAAAATACCCCCATAGGGTAGAATGACTGAAAT
1 ATGACCGAAATACCCCCATAGGATAAAATGACAAAAATAAACCCATAGGGTAAAATGACTAAAAT
* * * * * *
24582958 ACCTCCATAAGGTAGAATGATCGAAATACCCCTATAGGGTAGAATGACCGAAATACCCTCATAGG
66 ACCCCCATAAGGTAAAATGACCGAAATACCCCTATAGGGTAAAATGACCGAAATACCCCCATAAG
24583023 GTAAA
131 GTAAA
*
24583028 ATGACCGAAATACCCCCATAGAATAAAATGATCAAAATATAAACCCATAGGGTAAAATGACTAAA
1 ATGACCGAAATACCCCCATAGGATAAAATGA-CAAAA-ATAAACCCATAGGGTAAAATGACTAAA
*
24583093 ATACCCCCAT-AGGATAAAATGACCGAAATACCCCTATAGGGTAAAATGATCGAAATACCCCCAT
64 ATACCCCCATAAGG-TAAAATGACCGAAATACCCCTATAGGGTAAAATGACCGAAATACCCCCAT
*
24583157 AAGGTAGA
128 AAGGTAAA
24583165 ATGACCGAAATACCCCCATAGGATAAAATGAC
1 ATGACCGAAATACCCCCATAGGATAAAATGAC
24583197 TGTTATACCC
Statistics
Matches: 149, Mismatches: 17, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
135 28 0.19
136 8 0.05
137 113 0.76
ACGTcount: A:0.44, C:0.22, G:0.16, T:0.18
Consensus pattern (135 bp):
ATGACCGAAATACCCCCATAGGATAAAATGACAAAAATAAACCCATAGGGTAAAATGACTAAAAT
ACCCCCATAAGGTAAAATGACCGAAATACCCCTATAGGGTAAAATGACCGAAATACCCCCATAAG
GTAAA
Found at i:24583207 original size:27 final size:27
Alignment explanation
Indices: 24582893--24583196 Score: 347
Period size: 27 Copynumber: 11.2 Consensus size: 27
24582883 TTACACTGTT
* * *
24582893 ATGACCAAAATACCTCCATAGGATAAA
1 ATGACCGAAATACCCCCATAGGGTAAA
* *
24582920 ATGACCAAAATACCCCCATAGGGTAGA
1 ATGACCGAAATACCCCCATAGGGTAAA
* * * *
24582947 ATGACTGAAATACCTCCATAAGGTAGA
1 ATGACCGAAATACCCCCATAGGGTAAA
* * *
24582974 ATGATCGAAATACCCCTATAGGGTAGA
1 ATGACCGAAATACCCCCATAGGGTAAA
*
24583001 ATGACCGAAATACCCTCATAGGGTAAA
1 ATGACCGAAATACCCCCATAGGGTAAA
**
24583028 ATGACCGAAATACCCCCATAGAATAAA
1 ATGACCGAAATACCCCCATAGGGTAAA
** **
24583055 ATGATCAAAATATAAACCCATAGGGTAAA
1 ATGA-CCGAA-ATACCCCCATAGGGTAAA
** *
24583084 ATGACTAAAATACCCCCATAGGATAAA
1 ATGACCGAAATACCCCCATAGGGTAAA
*
24583111 ATGACCGAAATACCCCTATAGGGTAAA
1 ATGACCGAAATACCCCCATAGGGTAAA
* * *
24583138 ATGATCGAAATACCCCCATAAGGTAGA
1 ATGACCGAAATACCCCCATAGGGTAAA
*
24583165 ATGACCGAAATACCCCCATAGGATAAA
1 ATGACCGAAATACCCCCATAGGGTAAA
24583192 ATGAC
1 ATGAC
24583197 TGTTATACCC
Statistics
Matches: 234, Mismatches: 41, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
27 209 0.89
28 7 0.03
29 18 0.08
ACGTcount: A:0.44, C:0.22, G:0.16, T:0.18
Consensus pattern (27 bp):
ATGACCGAAATACCCCCATAGGGTAAA
Found at i:24598395 original size:23 final size:24
Alignment explanation
Indices: 24598369--24598438 Score: 74
Period size: 23 Copynumber: 3.0 Consensus size: 24
24598359 TCTATCGATT
*
24598369 TGAAACGGTAAGCTCCGT-AGAGC
1 TGAAACGGTAAGCTCCATAAGAGC
* *
24598392 TGAAACAGTAAGCT-CATAAGAGT
1 TGAAACGGTAAGCTCCATAAGAGC
* *
24598415 TGAAATGGTAAGCT-CATACGAGC
1 TGAAACGGTAAGCTCCATAAGAGC
24598438 T
1 T
24598439 ATGGTGAGTC
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
22 2 0.05
23 37 0.95
ACGTcount: A:0.36, C:0.17, G:0.26, T:0.21
Consensus pattern (24 bp):
TGAAACGGTAAGCTCCATAAGAGC
Found at i:24603317 original size:26 final size:25
Alignment explanation
Indices: 24603286--24603371 Score: 91
Period size: 26 Copynumber: 3.3 Consensus size: 25
24603276 CGCATTTCAA
24603286 ATAGTCCTAACAGACTTCCACAAAAG
1 ATAGTCCTAAC-GACTTCCACAAAAG
* *
24603312 ATAGTCTTGACGGACTTCCACAAAAG
1 ATAGTCCTAAC-GACTTCCACAAAAG
* * * *
24603338 ATAGCCCTAGCGAACTTTCACATAAG
1 ATAGTCCTAACG-ACTTCCACAAAAG
24603364 ATAGTCCT
1 ATAGTCCT
24603372 GATGGACTTC
Statistics
Matches: 49, Mismatches: 10, Indels: 2
0.80 0.16 0.03
Matches are distributed among these distances:
25 1 0.02
26 48 0.98
ACGTcount: A:0.36, C:0.26, G:0.15, T:0.23
Consensus pattern (25 bp):
ATAGTCCTAACGACTTCCACAAAAG
Found at i:24603380 original size:26 final size:25
Alignment explanation
Indices: 24603298--24603382 Score: 91
Period size: 26 Copynumber: 3.3 Consensus size: 25
24603288 AGTCCTAACA
*
24603298 GACTTCCACAAAAGATAGTCTTGACG
1 GACTTCCACAAAAGATAGTCCTGA-G
*
24603324 GACTTCCACAAAAGATAGCCCT-AG
1 GACTTCCACAAAAGATAGTCCTGAG
* *
24603348 CGAACTTTCACATAAGATAGTCCTGATG
1 -G-ACTTCCACAAAAGATAGTCCTGA-G
24603376 GACTTCC
1 GACTTCC
24603383 CACATTTCAA
Statistics
Matches: 49, Mismatches: 6, Indels: 8
0.78 0.10 0.13
Matches are distributed among these distances:
24 1 0.02
25 2 0.04
26 43 0.88
27 2 0.04
28 1 0.02
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.24
Consensus pattern (25 bp):
GACTTCCACAAAAGATAGTCCTGAG
Found at i:24603413 original size:107 final size:108
Alignment explanation
Indices: 24603202--24603400 Score: 262
Period size: 107 Copynumber: 1.9 Consensus size: 108
24603192 TCCCCATACT
* * ** *
24603202 AGATAGTCTTCATGGTCTTCCACAAAAGATAGTTCTGGTAGACTTTCCACATAAGATAGTCTTGA
1 AGATAGTCTTCACGGACTTCCACAAAAGATAGCCCTGGTAGACTTTCCACATAAGATAGTCCTGA
* *
24603267 TTAACCTTCCGCATTTCAAATAGTCCTAACAGACTTCCACAAA
66 TGAACCTTCCACATTTCAAATAGTCCTAACAGACTTCCACAAA
*
24603310 AGATAGTCTTGACGGACTTCCACAAAAGATAGCCCTAGCG-A-ACTTT-CACATAAGATAGTCCT
1 AGATAGTCTTCACGGACTTCCACAAAAGATAGCCCT-G-GTAGACTTTCCACATAAGATAGTCCT
*
24603372 GATGGA-CTTCCCACATTTCAAATAGTCCT
64 GATGAACCTT-CCACATTTCAAATAGTCCT
24603401 TACGGGCTTC
Statistics
Matches: 79, Mismatches: 9, Indels: 7
0.83 0.09 0.07
Matches are distributed among these distances:
106 3 0.04
107 37 0.47
108 36 0.46
109 2 0.03
110 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (108 bp):
AGATAGTCTTCACGGACTTCCACAAAAGATAGCCCTGGTAGACTTTCCACATAAGATAGTCCTGA
TGAACCTTCCACATTTCAAATAGTCCTAACAGACTTCCACAAA
Found at i:24606896 original size:23 final size:25
Alignment explanation
Indices: 24606868--24606931 Score: 96
Period size: 23 Copynumber: 2.6 Consensus size: 25
24606858 TTTGCCCTCA
24606868 TCTCTGCCCTCTGCCAGTTCTTTG-
1 TCTCTGCCCTCTGCCAGTTCTTTGT
*
24606892 T-TCTGCCCTCTGCCGGTTCTTTGT
1 TCTCTGCCCTCTGCCAGTTCTTTGT
24606916 TCCTCTGCCCTCTGCC
1 T-CTCTGCCCTCTGCC
24606932 GGTGAGTTTA
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
23 21 0.58
24 2 0.06
26 13 0.36
ACGTcount: A:0.02, C:0.41, G:0.17, T:0.41
Consensus pattern (25 bp):
TCTCTGCCCTCTGCCAGTTCTTTGT
Found at i:24606903 original size:30 final size:30
Alignment explanation
Indices: 24606823--24606905 Score: 87
Period size: 30 Copynumber: 2.7 Consensus size: 30
24606813 ACGAACGTCC
**
24606823 TTCTTTGCTCTCTGCTCTCTGCCCTCTGCTGG
1 TTCTTTG-T-TCTGCTCTCTGCCCTCTGCCAG
**
24606855 TTCTTTGCCCT-CATCTCTGCCCTCTGCCAG
1 TTCTTTGTTCTGC-TCTCTGCCCTCTGCCAG
*
24606885 TTCTTTGTTCTGCCCTCTGCC
1 TTCTTTGTTCTGCTCTCTGCC
24606906 GGTTCTTTGT
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
29 1 0.02
30 33 0.79
31 1 0.02
32 7 0.17
ACGTcount: A:0.02, C:0.40, G:0.16, T:0.42
Consensus pattern (30 bp):
TTCTTTGTTCTGCTCTCTGCCCTCTGCCAG
Found at i:24614363 original size:30 final size:30
Alignment explanation
Indices: 24614329--24614388 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
24614319 ATAATCGTTT
*
24614329 TATCATAAATTTCAAGTCACAATCATCTAA
1 TATCATAAATGTCAAGTCACAATCATCTAA
*
24614359 TATCATAAATGTCAAGTCACGATCATCTAA
1 TATCATAAATGTCAAGTCACAATCATCTAA
24614389 ACTTTAATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.32
Consensus pattern (30 bp):
TATCATAAATGTCAAGTCACAATCATCTAA
Found at i:24619686 original size:18 final size:18
Alignment explanation
Indices: 24619665--24619708 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
24619655 CATTCTTCTC
** *
24619665 CCCTTTCCCCTTCTCCTT
1 CCCTTTCCCCAACCCCTT
24619683 CCCTTTCCCCAACCCCTT
1 CCCTTTCCCCAACCCCTT
24619701 CCCTTTCC
1 CCCTTTCC
24619709 TGTTTCGAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.05, C:0.59, G:0.00, T:0.36
Consensus pattern (18 bp):
CCCTTTCCCCAACCCCTT
Found at i:24622542 original size:98 final size:98
Alignment explanation
Indices: 24622368--24622564 Score: 376
Period size: 98 Copynumber: 2.0 Consensus size: 98
24622358 GTGCAATAAA
*
24622368 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
*
24622433 CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
66 CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
24622466 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
24622531 CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
66 CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
24622564 A
1 A
24622565 TGATTTTTAA
Statistics
Matches: 97, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
98 97 1.00
ACGTcount: A:0.37, C:0.24, G:0.10, T:0.28
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
Found at i:24625044 original size:14 final size:14
Alignment explanation
Indices: 24625021--24625060 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
24625011 ACAAAAAAGT
*
24625021 AAAACATTTTCCAG
1 AAAACATTTTACAG
* *
24625035 AAATCATTTTACGG
1 AAAACATTTTACAG
24625049 AAAACATTTTAC
1 AAAACATTTTAC
24625061 TGGCAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:24625307 original size:251 final size:252
Alignment explanation
Indices: 24624827--24625336 Score: 923
Period size: 251 Copynumber: 2.0 Consensus size: 252
24624817 TTTGATTTAT
24624827 TTAATTATAAATAAATCATTGCAATATATGTAAAAACAATTTAAAATATAAAAATTTATTAATAT
1 TTAATTATAAATAAATCATTGCAATATATGTAAAAACAATTTAAAATATAAAAATTTATTAATAT
* *
24624892 ATTAATATATGTAAAAACAACTTTTCCGAAAAATATTTTCAGAAAATCTGCCAAATAGCAGAAAA
66 ATTAATATATGTAAAAACAAATTTTCCGAAAAATATTTTCAGAAAATCTGCCAAACAGCAGAAAA
24624957 TATTTTACACAGATTCAATCAAACACCAGAAAATATTTACAAGTAAATCATTTTACAAAAAAGTA
131 TATTTTACACAGATTCAATCAAACACCAGAAAATATTTACAAGTAAATCATTTTACAAAAAAGTA
24625022 AAACATTTTCCAGAAATCATTTTACGGAAAACATTTTACTGGCAATCAAACAGACCC
196 AAACATTTTCCAGAAATCATTTTACGGAAAACATTTTACTGGCAATCAAACAGACCC
24625079 TTAATTATAAATAAATCATTGCAATATATGTAAAAACAATTTAAAATATAAAAATTTATTAATAT
1 TTAATTATAAATAAATCATTGCAATATATGTAAAAACAATTTAAAATATAAAAATTTATTAATAT
* * * *
24625144 ATTAATATATGTAAAAACAAATTTTCCGGAAAATATTTTCCGAAAAT-TGCGAAACAGTAGAAAA
66 ATTAATATATGTAAAAACAAATTTTCCGAAAAATATTTTCAGAAAATCTGCCAAACAGCAGAAAA
* *
24625208 TATTTTACACAGATTTAATCAAACACCAGATAATATTTACAAGTAAATCATTTTACAAAAAAGTA
131 TATTTTACACAGATTCAATCAAACACCAGAAAATATTTACAAGTAAATCATTTTACAAAAAAGTA
*
24625273 AAATATTTTCCAGAAATCATTTTACGGAAAACATTTTACTGGCAATCAAACAGACCC
196 AAACATTTTCCAGAAATCATTTTACGGAAAACATTTTACTGGCAATCAAACAGACCC
*
24625330 TGAATTA
1 TTAATTA
24625337 GTTTCTCACT
Statistics
Matches: 248, Mismatches: 10, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
251 139 0.56
252 109 0.44
ACGTcount: A:0.48, C:0.13, G:0.08, T:0.31
Consensus pattern (252 bp):
TTAATTATAAATAAATCATTGCAATATATGTAAAAACAATTTAAAATATAAAAATTTATTAATAT
ATTAATATATGTAAAAACAAATTTTCCGAAAAATATTTTCAGAAAATCTGCCAAACAGCAGAAAA
TATTTTACACAGATTCAATCAAACACCAGAAAATATTTACAAGTAAATCATTTTACAAAAAAGTA
AAACATTTTCCAGAAATCATTTTACGGAAAACATTTTACTGGCAATCAAACAGACCC
Found at i:24627156 original size:16 final size:16
Alignment explanation
Indices: 24627135--24627165 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
24627125 GGTCAATTTT
24627135 TTCCTTTTATTCTTGC
1 TTCCTTTTATTCTTGC
24627151 TTCCTTTTATTCTTG
1 TTCCTTTTATTCTTG
24627166 GTCAAAAGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.06, C:0.23, G:0.06, T:0.65
Consensus pattern (16 bp):
TTCCTTTTATTCTTGC
Found at i:24630648 original size:23 final size:23
Alignment explanation
Indices: 24630622--24630666 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
24630612 GGTAAACGTG
24630622 TAGAATAACGATTATGGGTCAAA
1 TAGAATAACGATTATGGGTCAAA
24630645 TAGAATAACGATTATGGGTCAA
1 TAGAATAACGATTATGGGTCAA
24630667 TTATTATATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.42, C:0.09, G:0.22, T:0.27
Consensus pattern (23 bp):
TAGAATAACGATTATGGGTCAAA
Found at i:24645997 original size:40 final size:39
Alignment explanation
Indices: 24645952--24646050 Score: 119
Period size: 40 Copynumber: 2.5 Consensus size: 39
24645942 GTTTGGAACA
* * *
24645952 AAAGCGCCACAAAAAATCGAGCATT-AGCGGCGATTTATCC
1 AAAGCGCCGCTAAAAATAGAGC-TTCAGCGGCGA-TTATCC
**
24645992 AAAGCGCCGCTAAAGGTAGAGCTTCAGCGGCGATTATCC
1 AAAGCGCCGCTAAAAATAGAGCTTCAGCGGCGATTATCC
24646031 AGAAGCGCCGCTAAAAATAG
1 A-AAGCGCCGCTAAAAATAG
24646051 GAATTAATGG
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
39 9 0.18
40 41 0.82
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.16
Consensus pattern (39 bp):
AAAGCGCCGCTAAAAATAGAGCTTCAGCGGCGATTATCC
Found at i:24646192 original size:41 final size:41
Alignment explanation
Indices: 24646125--24646344 Score: 318
Period size: 41 Copynumber: 5.4 Consensus size: 41
24646115 TTTTTTAAAC
* *
24646125 CTTTAGCGGCGTTTTTGTGTAAGCGCCGCTAATTCTCGGAT
1 CTTTAGCGGCGTTTTTGTGTAGGCGCCGCTAATGCTCGGAT
**
24646166 CTTTAGCGGCGTTTTCATGTAGGCGCCGCTAATGCTCGGAT
1 CTTTAGCGGCGTTTTTGTGTAGGCGCCGCTAATGCTCGGAT
* *
24646207 CTTTAGCGGCATTTTTGTCTAGGCGCCGCTAATGCTC-GAGT
1 CTTTAGCGGCGTTTTTGTGTAGGCGCCGCTAATGCTCGGA-T
*
24646248 CTTTAGCGGCGTTTTCGTGTAGGCGCCGCTAATGCTCGGAT
1 CTTTAGCGGCGTTTTTGTGTAGGCGCCGCTAATGCTCGGAT
* * **
24646289 CTTTAGCGGCATTTTTGTCTATACGCCGCTAATGCTC-GAT
1 CTTTAGCGGCGTTTTTGTGTAGGCGCCGCTAATGCTCGGAT
24646329 CTTTAGCGGCGTTTTT
1 CTTTAGCGGCGTTTTT
24646345 AACTGAGCGC
Statistics
Matches: 160, Mismatches: 17, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
40 20 0.12
41 138 0.86
42 2 0.01
ACGTcount: A:0.14, C:0.24, G:0.27, T:0.35
Consensus pattern (41 bp):
CTTTAGCGGCGTTTTTGTGTAGGCGCCGCTAATGCTCGGAT
Found at i:24646262 original size:82 final size:82
Alignment explanation
Indices: 24646125--24646343 Score: 354
Period size: 82 Copynumber: 2.7 Consensus size: 82
24646115 TTTTTTAAAC
* * *
24646125 CTTTAGCGGCGTTTTTGTGTAAGCGCCGCTAATTCTCG-GATCTTTAGCGGCGTTTTCATGTAGG
1 CTTTAGCGGCATTTTTGTCTAAGCGCCGCTAATGCTCGAG-TCTTTAGCGGCGTTTTCATGTAGG
24646189 CGCCGCTAATGCTCGGAT
65 CGCCGCTAATGCTCGGAT
* *
24646207 CTTTAGCGGCATTTTTGTCTAGGCGCCGCTAATGCTCGAGTCTTTAGCGGCGTTTTCGTGTAGGC
1 CTTTAGCGGCATTTTTGTCTAAGCGCCGCTAATGCTCGAGTCTTTAGCGGCGTTTTCATGTAGGC
24646272 GCCGCTAATGCTCGGAT
66 GCCGCTAATGCTCGGAT
24646289 CTTTAGCGGCATTTTTGTCTATA-CGCCGCTAATGCTCGA-TCTTTAGCGGCGTTTT
1 CTTTAGCGGCATTTTTGTCTA-AGCGCCGCTAATGCTCGAGTCTTTAGCGGCGTTTT
24646344 TAACTGAGCG
Statistics
Matches: 129, Mismatches: 6, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
81 16 0.12
82 112 0.87
83 1 0.01
ACGTcount: A:0.14, C:0.24, G:0.27, T:0.35
Consensus pattern (82 bp):
CTTTAGCGGCATTTTTGTCTAAGCGCCGCTAATGCTCGAGTCTTTAGCGGCGTTTTCATGTAGGC
GCCGCTAATGCTCGGAT
Found at i:24649736 original size:25 final size:25
Alignment explanation
Indices: 24649708--24649759 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
24649698 TTGTTTGAAA
24649708 TCGAAATTCATTTTGAATTGCGCTT
1 TCGAAATTCATTTTGAATTGCGCTT
24649733 TCGAAATTCATTTTGAATTGCGCTT
1 TCGAAATTCATTTTGAATTGCGCTT
24649758 TC
1 TC
24649760 TTGATGCACC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.23, C:0.17, G:0.15, T:0.44
Consensus pattern (25 bp):
TCGAAATTCATTTTGAATTGCGCTT
Found at i:24651278 original size:9 final size:9
Alignment explanation
Indices: 24651252--24651297 Score: 55
Period size: 9 Copynumber: 5.6 Consensus size: 9
24651242 ATTAATATTA
24651252 TACATAACT
1 TACATAACT
*
24651261 GAC--AACT
1 TACATAACT
24651268 TACATAACT
1 TACATAACT
24651277 TAC--AACT
1 TACATAACT
24651284 TACATAACT
1 TACATAACT
24651293 TACAT
1 TACAT
24651298 TTTTTTAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
7 13 0.42
9 18 0.58
ACGTcount: A:0.43, C:0.24, G:0.02, T:0.30
Consensus pattern (9 bp):
TACATAACT
Found at i:24651293 original size:16 final size:16
Alignment explanation
Indices: 24651252--24651296 Score: 81
Period size: 16 Copynumber: 2.8 Consensus size: 16
24651242 ATTAATATTA
*
24651252 TACATAACTGACAACT
1 TACATAACTTACAACT
24651268 TACATAACTTACAACT
1 TACATAACTTACAACT
24651284 TACATAACTTACA
1 TACATAACTTACA
24651297 TTTTTTTAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.44, C:0.24, G:0.02, T:0.29
Consensus pattern (16 bp):
TACATAACTTACAACT
Found at i:24651374 original size:65 final size:65
Alignment explanation
Indices: 24651305--24651771 Score: 457
Period size: 65 Copynumber: 7.4 Consensus size: 65
24651295 CATTTTTTTA
* * *
24651305 ATTATTCATAAATTACATAACATACATTAATATTATACATAAATTACATAACTTAGTTAATTAAT
1 ATTATACATAACTTACATAACTTACATTAATATTATACATAAATTACATAACTTAGTTAATTAAT
* * * *
24651370 ATTATACATAAATTACATAACTTA-ATTTTATGTTCTTATACATAACTTACATTAA--TA-TT-A
1 ATTATACATAACTTACATAACTTACA--TTA--ATATTATACATAAATTACA-TAACTTAGTTAA
24651430 -TACAT
61 TTA-AT
* *
24651435 A-AATTACATAACTTA-ATTAA-TTA-ATTAATATTATACATAAATTACATAACTTAATTAATT-
1 ATTA-TACATAACTTACA-TAACTTACATTAATATTATACATAAATTACATAACTTAGTTAATTA
24651495 A-
64 AT
*
24651496 A-TATACATAACTTACATAACTTACATTAATATGATACATAAATTACATAACTTAGTTAATTAAT
1 ATTATACATAACTTACATAACTTACATTAATATTATACATAAATTACATAACTTAGTTAATTAAT
** *
24651560 ATTATACATATGTTACATAACTTACATTAATATGATACATAAATTACATAACTTAGTTAATTAAT
1 ATTATACATAACTTACATAACTTACATTAATATTATACATAAATTACATAACTTAGTTAATTAAT
* * * ** *
24651625 ATTATACGTAACTTAC--AACTTACA-T-A-ACT-TACATAACTTACAT---TTTTTTAATTATT
1 ATTATACATAACTTACATAACTTACATTAATATTATACATAAATTACATAACTTAGTTAATTAAT
*
24651681 CATAAATTACATAACTTA-ATTAA-TTA-ATTAATATTATACATAAATTACATAACTTAGTTAAT
1 -AT-TA-TACATAACTTACA-TAACTTACATTAATATTATACATAAATTACATAACTTAGTTAAT
24651743 TAAT
62 TAAT
24651747 ATTATACATAACTTAC--AACTTACAT
1 ATTATACATAACTTACATAACTTACAT
24651772 AACTTACAAT
Statistics
Matches: 335, Mismatches: 32, Indels: 72
0.76 0.07 0.16
Matches are distributed among these distances:
56 10 0.03
57 2 0.01
58 1 0.00
59 27 0.08
60 35 0.10
61 14 0.04
62 47 0.14
63 36 0.11
64 12 0.04
65 115 0.34
66 15 0.04
67 2 0.01
68 16 0.05
69 3 0.01
ACGTcount: A:0.45, C:0.12, G:0.02, T:0.41
Consensus pattern (65 bp):
ATTATACATAACTTACATAACTTACATTAATATTATACATAAATTACATAACTTAGTTAATTAAT
Found at i:24651433 original size:22 final size:22
Alignment explanation
Indices: 24651405--24651608 Score: 88
Period size: 22 Copynumber: 9.8 Consensus size: 22
24651395 TTTTATGTTC
*
24651405 TTATACATAACTTACATTAATA
1 TTATACATAAATTACATTAATA
24651427 TTATACATAAATTACA-T-A-A
1 TTATACATAAATTACATTAATA
* *
24651446 CT-TA-ATTAATTA-ATTAATA
1 TTATACATAAATTACATTAATA
24651465 TTATACATAAATTACA-T-A-A
1 TTATACATAAATTACATTAATA
* *
24651484 CT-TA-ATTAATTA-ATATACATAA
1 TTATACATAAATTACAT-TA-AT-A
* *
24651506 CT-TACATAACTTACATTAATA
1 TTATACATAAATTACATTAATA
*
24651527 TGATACATAAATTACA-TAACTTA
1 TTATACATAAATTACATTAA--TA
*
24651550 GTTA-A-TTAATATT--A-TACATA
1 -TTATACATAA-ATTACATTA-ATA
*
24651570 TGT-TACATAACTTACATTAATA
1 T-TATACATAAATTACATTAATA
*
24651592 TGATACATAAATTACAT
1 TTATACATAAATTACAT
24651609 AACTTAGTTA
Statistics
Matches: 137, Mismatches: 18, Indels: 54
0.66 0.09 0.26
Matches are distributed among these distances:
16 2 0.01
17 15 0.11
18 6 0.04
19 7 0.05
20 11 0.08
21 19 0.14
22 57 0.42
23 16 0.12
24 4 0.03
ACGTcount: A:0.47, C:0.11, G:0.02, T:0.40
Consensus pattern (22 bp):
TTATACATAAATTACATTAATA
Found at i:24651444 original size:9 final size:9
Alignment explanation
Indices: 24651430--24651610 Score: 58
Period size: 9 Copynumber: 19.8 Consensus size: 9
24651420 ATTAATATTA
24651430 TACATAAAT
1 TACATAAAT
*
24651439 TACATAACT
1 TACATAAAT
*
24651448 TA-ATTAAT
1 TACATAAAT
24651456 TA-ATTAATATT
1 TACA-TAA-A-T
24651467 ATACATAAAT
1 -TACATAAAT
*
24651477 TACATAACT
1 TACATAAAT
*
24651486 TA-ATTAAT
1 TACATAAAT
24651494 TA-AT--A-
1 TACATAAAT
*
24651499 TACATAACT
1 TACATAAAT
*
24651508 TACATAACT
1 TACATAAAT
24651517 TACATTAATAT
1 TACA-TAA-AT
24651528 GATACATAAAT
1 --TACATAAAT
*
24651539 TACATAACT
1 TACATAAAT
* *
24651548 TA-GTTAAT
1 TACATAAAT
*
24651556 TA-AT-ATT
1 TACATAAAT
**
24651563 ATACATATGT
1 -TACATAAAT
*
24651573 TACATAACT
1 TACATAAAT
24651582 TACATTAATAT
1 TACA-TAA-AT
24651593 GATACATAAAT
1 --TACATAAAT
24651604 TACATAA
1 TACATAA
24651611 CTTAGTTAAT
Statistics
Matches: 132, Mismatches: 20, Indels: 40
0.69 0.10 0.21
Matches are distributed among these distances:
5 2 0.02
6 3 0.02
7 2 0.02
8 23 0.17
9 65 0.49
10 9 0.07
11 8 0.06
12 11 0.08
13 9 0.07
ACGTcount: A:0.48, C:0.11, G:0.02, T:0.39
Consensus pattern (9 bp):
TACATAAAT
Found at i:24651456 original size:17 final size:17
Alignment explanation
Indices: 24651436--24651495 Score: 50
Period size: 17 Copynumber: 3.3 Consensus size: 17
24651426 ATTATACATA
24651436 AATTACATAACTTAATT
1 AATTACATAACTTAATT
* *
24651453 AATTA-ATTAATATTATACATA
1 AATTACA-T-A-ACT-TA-ATT
24651474 AATTACATAACTTAATT
1 AATTACATAACTTAATT
24651491 AATTA
1 AATTA
24651496 ATATACATAA
Statistics
Matches: 33, Mismatches: 4, Indels: 12
0.67 0.08 0.24
Matches are distributed among these distances:
16 1 0.03
17 13 0.39
18 3 0.09
19 4 0.12
20 3 0.09
21 8 0.24
22 1 0.03
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (17 bp):
AATTACATAACTTAATT
Found at i:24651467 original size:38 final size:38
Alignment explanation
Indices: 24651420--24651497 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
24651410 CATAACTTAC
24651420 ATTAATATTATACATAAATTACATAACTTAATTAATTA
1 ATTAATATTATACATAAATTACATAACTTAATTAATTA
24651458 ATTAATATTATACATAAATTACATAACTTAATTAATTA
1 ATTAATATTATACATAAATTACATAACTTAATTAATTA
24651496 AT
1 AT
24651498 ATACATAACT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (38 bp):
ATTAATATTATACATAAATTACATAACTTAATTAATTA
Found at i:24651655 original size:9 final size:9
Alignment explanation
Indices: 24651468--24651950 Score: 106
Period size: 9 Copynumber: 55.3 Consensus size: 9
24651458 ATTAATATTA
*
24651468 TACATAAAT
1 TACATAACT
24651477 TACATAACT
1 TACATAACT
24651486 TA-ATTAA-T
1 TACA-TAACT
24651494 TA-AT-A--
1 TACATAACT
24651499 TACATAACT
1 TACATAACT
24651508 TACATAACT
1 TACATAACT
*
24651517 TACATTAATAT
1 TACA-TAA-CT
*
24651528 GATACATAAAT
1 --TACATAACT
24651539 TACATAACT
1 TACATAACT
**
24651548 TAGTTAA-T
1 TACATAACT
*
24651556 TA-AT-ATT
1 TACATAACT
**
24651563 ATACATATGT
1 -TACATAACT
24651573 TACATAACT
1 TACATAACT
*
24651582 TACATTAATAT
1 TACA-TAA-CT
*
24651593 GATACATAAAT
1 --TACATAACT
24651604 TACATAACT
1 TACATAACT
**
24651613 TAGTTAA-T
1 TACATAACT
*
24651621 TA-AT-ATT
1 TACATAACT
*
24651628 ATACGTAACT
1 -TACATAACT
24651638 TAC--AACT
1 TACATAACT
24651645 TACATAACT
1 TACATAACT
24651654 TACATAACT
1 TACATAACT
***
24651663 TACATTTTTT
1 TACA-TAACT
*
24651673 TA-ATTA-T
1 TACATAACT
*
24651680 T-CATAAAT
1 TACATAACT
24651688 TACATAACT
1 TACATAACT
24651697 TA-ATTAA-T
1 TACA-TAACT
*
24651705 TA-ATTAATATT
1 TACA-T-A-ACT
*
24651716 ATACATAAAT
1 -TACATAACT
24651726 TACATAACT
1 TACATAACT
**
24651735 TAGTTAA-T
1 TACATAACT
*
24651743 TA-AT-ATT
1 TACATAACT
24651750 ATACATAACT
1 -TACATAACT
24651760 TAC--AACT
1 TACATAACT
24651767 TACATAACT
1 TACATAACT
**
24651776 TACA-ATTTT
1 TACATA-ACT
*
24651785 TA-ATTA-T
1 TACATAACT
* *
24651792 T-CGTAAAT
1 TACATAACT
24651800 TACATAACT
1 TACATAACT
* *
24651809 TACTTAATT
1 TACATAACT
*
24651818 TTCATAA--
1 TACATAACT
*
24651825 TAAATAACT
1 TACATAACT
24651834 TACATAACT
1 TACATAACT
24651843 TAC--AACT
1 TACATAACT
24651850 TACATAACT
1 TACATAACT
* * *
24651859 TATACAACA
1 TACATAACT
24651868 TACATAACT
1 TACATAACT
* *
24651877 TACATAGCA
1 TACATAACT
*
24651886 TA-ATTTGACT
1 TACA--TAACT
*
24651896 AATACACAACT
1 --TACATAACT
*
24651907 TACATAATT
1 TACATAACT
*
24651916 TTCATAA--
1 TACATAACT
*
24651923 TAAATAACT
1 TACATAACT
24651932 TACATAA--
1 TACATAACT
24651939 TACATAACT
1 TACATAACT
24651948 TAC
1 TAC
24651951 GTAGTTTAGT
Statistics
Matches: 354, Mismatches: 63, Indels: 114
0.67 0.12 0.21
Matches are distributed among these distances:
5 2 0.01
6 6 0.02
7 55 0.16
8 36 0.10
9 203 0.57
10 20 0.06
11 11 0.03
12 11 0.03
13 10 0.03
ACGTcount: A:0.45, C:0.14, G:0.02, T:0.39
Consensus pattern (9 bp):
TACATAACT
Found at i:24651691 original size:34 final size:35
Alignment explanation
Indices: 24651647--24651846 Score: 124
Period size: 34 Copynumber: 5.6 Consensus size: 35
24651637 TTACAACTTA
*
24651647 CATAACTTACATAACTTACATT-TTTTTAATTATT
1 CATAAATTACATAACTTACATTATTTTTAATTATT
* *
24651681 CATAAATTACATAACTTA-ATTAATTAATTAATATTATA
1 CATAAATTACATAACTTACATT-ATT--TTTA-ATTATT
* * *
24651719 CATAAATTACATAACTTAGTTAATTAATATTATACATAACTT
1 CATAAATTACATAACTTA---CATT-AT-TTTTA-ATTA-TT
* *
24651761 -ACAACTTACATAACTTACA--ATTTTTAATTATT
1 CATAAATTACATAACTTACATTATTTTTAATTATT
* * * * *
24651793 CGTAAATTACATAACTTAC-TTAATTTTCATAATA
1 CATAAATTACATAACTTACATTATTTTTAATTATT
* *
24651827 AATAACTTACATAACTTACA
1 CATAAATTACATAACTTACA
24651847 ACTTACATAA
Statistics
Matches: 128, Mismatches: 23, Indels: 29
0.71 0.13 0.16
Matches are distributed among these distances:
32 2 0.02
33 21 0.16
34 46 0.36
35 4 0.03
37 3 0.02
38 24 0.19
41 20 0.16
42 7 0.05
43 1 0.01
ACGTcount: A:0.43, C:0.14, G:0.01, T:0.42
Consensus pattern (35 bp):
CATAAATTACATAACTTACATTATTTTTAATTATT
Found at i:24651772 original size:16 final size:16
Alignment explanation
Indices: 24651751--24651880 Score: 79
Period size: 16 Copynumber: 7.8 Consensus size: 16
24651741 ATTAATATTA
24651751 TACATAACTTACAACT
1 TACATAACTTACAACT
24651767 TACATAACTTACAA-T
1 TACATAACTTACAACT
** *
24651782 T-TTTAA-TTATTCGTAAAT
1 TACATAACTTA--C--AACT
*
24651800 TACATAACTTACTTAATT
1 TACATAACTTAC--AACT
* * *
24651818 TTCATAA-TAAATAACT
1 TACATAACT-TACAACT
24651834 TACATAACTTACAACT
1 TACATAACTTACAACT
*
24651850 TACATAACTTATACAACA
1 TACATAAC-T-TACAACT
24651868 TACATAACTTACA
1 TACATAACTTACA
24651881 TAGCATAATT
Statistics
Matches: 89, Mismatches: 14, Indels: 22
0.71 0.11 0.18
Matches are distributed among these distances:
13 3 0.03
14 3 0.03
15 3 0.03
16 40 0.45
17 6 0.07
18 28 0.31
19 3 0.03
20 3 0.03
ACGTcount: A:0.44, C:0.18, G:0.01, T:0.37
Consensus pattern (16 bp):
TACATAACTTACAACT
Found at i:24651929 original size:16 final size:16
Alignment explanation
Indices: 24651918--24651950 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
24651908 ACATAATTTT
24651918 CATAATAAATAACTTA
1 CATAATAAATAACTTA
*
24651934 CATAATACATAACTTA
1 CATAATAAATAACTTA
24651950 C
1 C
24651951 GTAGTTTAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.52, C:0.18, G:0.00, T:0.30
Consensus pattern (16 bp):
CATAATAAATAACTTA
Found at i:24653076 original size:66 final size:65
Alignment explanation
Indices: 24652968--24653139 Score: 202
Period size: 66 Copynumber: 2.6 Consensus size: 65
24652958 TGAGCAAATT
* * * *
24652968 ACACAACTTAAAGCGGAGGCAACATCGAGAGAAGCTGAGGTTCAA-AAAAGATATGAAGAACTCC
1 ACACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAACAAAAG-TATGAAGAACTCC
24653032 A
65 A
* * *
24653033 GCTACAACTGAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAACGAAAGTATGAAGAACTCC
1 AC-ACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAACAAAAGTATGAAGAACTCC
24653098 A
65 A
* * ** *
24653099 ACAGCAGCTTAAAGCAGATGCGGCAGTAAGAGAAGCAGAGG
1 ACA-CAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGG
24653140 CGGCAGCGAG
Statistics
Matches: 90, Mismatches: 14, Indels: 5
0.83 0.13 0.05
Matches are distributed among these distances:
65 2 0.02
66 84 0.93
67 4 0.04
ACGTcount: A:0.41, C:0.19, G:0.27, T:0.13
Consensus pattern (65 bp):
ACACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAACAAAAGTATGAAGAACTCCA
Found at i:24653134 original size:21 final size:21
Alignment explanation
Indices: 24653110--24653182 Score: 65
Period size: 21 Copynumber: 3.5 Consensus size: 21
24653100 CAGCAGCTTA
* *
24653110 AAGCAGATGCGGCAGTAAGAG
1 AAGCAGAGGCGGCAGCAAGAG
*
24653131 AAGCAGAGGCGGCAGCGAGAG
1 AAGCAGAGGCGGCAGCAAGAG
* * * ** *
24653152 AAGTACAGGCTGCAGTGAGGG
1 AAGCAGAGGCGGCAGCAAGAG
24653173 AAGCAGAGGC
1 AAGCAGAGGC
24653183 TAAAGCGAGG
Statistics
Matches: 42, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 42 1.00
ACGTcount: A:0.34, C:0.16, G:0.42, T:0.07
Consensus pattern (21 bp):
AAGCAGAGGCGGCAGCAAGAG
Found at i:24653183 original size:21 final size:21
Alignment explanation
Indices: 24653130--24653222 Score: 114
Period size: 21 Copynumber: 4.4 Consensus size: 21
24653120 GGCAGTAAGA
* *
24653130 GAAGCAGAGGCGGCAGCGAGA
1 GAAGCAGAGGCTGCAGCGAGG
* * *
24653151 GAAGTACAGGCTGCAGTGAGG
1 GAAGCAGAGGCTGCAGCGAGG
**
24653172 GAAGCAGAGGCTAAAGCGAGG
1 GAAGCAGAGGCTGCAGCGAGG
*
24653193 GAAGCAGAGGCTGCAACGAGG
1 GAAGCAGAGGCTGCAGCGAGG
24653214 GAAGCAGAG
1 GAAGCAGAG
24653223 CAGCGTCAAA
Statistics
Matches: 59, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 59 1.00
ACGTcount: A:0.34, C:0.16, G:0.44, T:0.05
Consensus pattern (21 bp):
GAAGCAGAGGCTGCAGCGAGG
Found at i:24653669 original size:43 final size:43
Alignment explanation
Indices: 24653529--24653797 Score: 231
Period size: 43 Copynumber: 6.2 Consensus size: 43
24653519 ATCTGCCAAA
* * *
24653529 TTTAGTGGCGTTTTTGGTCAAAGCGCCGCTAAAGATAATGGTC
1 TTTAGCGGCGTTTGTGGTCAAAGCGCCGCTAAAGATCATGGTC
** * *
24653572 TTTAGCGGCGTTTGTGGAAAAAAGCGCCACTAAAGATCATAGTC
1 TTTAGCGGCGTTTGTGG-TCAAAGCGCCGCTAAAGATCATGGTC
* * * *
24653616 TTTAGTGGCGTTTGTGGTCAAAGAGCCGCTATAGATCAGGGTC
1 TTTAGCGGCGTTTGTGGTCAAAGCGCCGCTAAAGATCATGGTC
* ** * * **
24653659 TATT-GCGGCGTTTGAGGGGAAAGCGCCGCTAAAGACCCTGACC
1 T-TTAGCGGCGTTTGTGGTCAAAGCGCCGCTAAAGATCATGGTC
* * * * *
24653702 TTTAGTGGCGTTTTTGG-GAGAAGCGCCGCTAAAGATAAGGGTC
1 TTTAGCGGCGTTTGTGGTCA-AAGCGCCGCTAAAGATCATGGTC
* * *
24653745 TTTAGCGGCGTTTGT-G-CAAGATGCGCCGCTGAAGATTAGGGTC
1 TTTAGCGGCGTTTGTGGTCAA-A-GCGCCGCTAAAGATCATGGTC
24653788 TTTAGCGGCG
1 TTTAGCGGCG
24653798 CATTCATTAG
Statistics
Matches: 180, Mismatches: 40, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
41 1 0.01
42 7 0.04
43 133 0.74
44 39 0.22
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.27
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGTCAAAGCGCCGCTAAAGATCATGGTC
Found at i:24653730 original size:86 final size:87
Alignment explanation
Indices: 24653529--24653758 Score: 288
Period size: 86 Copynumber: 2.7 Consensus size: 87
24653519 ATCTGCCAAA
* *
24653529 TTTAGTGGCGTTTTTGGTCAAAGCGCCGCTAAAGATAATGGTCTTTAGCGGCGTTTGTGGAAAAA
1 TTTAGTGGCGTTTTTGGTCAAAGCGCCGCTAAAGATAAGGGTCTTTAGCGGCGTTTGAGGAAAAA
* *
24653594 AGCGCCACTAAAGATCATAGTC
66 AGCGCCACTAAAGACCATAGCC
* * * * **
24653616 TTTAGTGGCGTTTGTGGTCAAAGAGCCGCTATAGATCAGGGTCTATT-GCGGCGTTTGAGG-GGA
1 TTTAGTGGCGTTTTTGGTCAAAGCGCCGCTAAAGATAAGGGTCT-TTAGCGGCGTTTGAGGAAAA
* *
24653679 AAGCGCCGCTAAAGACCCT-GACC
65 AAGCGCCACTAAAGACCATAG-CC
*
24653702 TTTAGTGGCGTTTTTGG-GAGAAGCGCCGCTAAAGATAAGGGTCTTTAGCGGCGTTTG
1 TTTAGTGGCGTTTTTGGTCA-AAGCGCCGCTAAAGATAAGGGTCTTTAGCGGCGTTTG
24653759 TGCAAGATGC
Statistics
Matches: 122, Mismatches: 17, Indels: 9
0.82 0.11 0.06
Matches are distributed among these distances:
85 4 0.03
86 65 0.53
87 51 0.42
88 2 0.02
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.28
Consensus pattern (87 bp):
TTTAGTGGCGTTTTTGGTCAAAGCGCCGCTAAAGATAAGGGTCTTTAGCGGCGTTTGAGGAAAAA
AGCGCCACTAAAGACCATAGCC
Found at i:24653773 original size:129 final size:130
Alignment explanation
Indices: 24653548--24653797 Score: 285
Period size: 129 Copynumber: 1.9 Consensus size: 130
24653538 GTTTTTGGTC
* ** * *
24653548 AAAGCGCCGCTAAAGATAATGGTCTTTAGCGGCGTTTGTGGAAAAAAGCGCCACTAAAGATCATA
1 AAAGCGCCGCTAAAGACAATGACCTTTAGCGGCGTTTGTGGAAAAAAGCGCCACTAAAGATAAGA
*
24653613 GTCTTTAGTGGCGTTTGTGGTCAAAGAGCCGCT-ATAGATCAGGGTCTATT-GCGGCGTTTGAGG
66 GTCTTTAGCGGCGTTTGTGGTCAAAGAGCCGCTGA-AGATCAGGGTCT-TTAGCGGCGTTTGAGG
24653676 GG
129 GG
** * * * * * *
24653678 AAAGCGCCGCTAAAGACCCTGACCTTTAGTGGCGTTTTTGG-GAGAAGCGCCGCTAAAGATAAGG
1 AAAGCGCCGCTAAAGACAATGACCTTTAGCGGCGTTTGTGGAAAAAAGCGCCACTAAAGATAAGA
* *
24653742 GTCTTTAGCGGCGTTTGT-G-CAAGATGCGCCGCTGAAGATTAGGGTCTTTAGCGGCG
66 GTCTTTAGCGGCGTTTGTGGTCAA-A-GAGCCGCTGAAGATCAGGGTCTTTAGCGGCG
24653798 CATTCATTAG
Statistics
Matches: 100, Mismatches: 16, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
127 3 0.03
128 4 0.04
129 58 0.58
130 35 0.35
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (130 bp):
AAAGCGCCGCTAAAGACAATGACCTTTAGCGGCGTTTGTGGAAAAAAGCGCCACTAAAGATAAGA
GTCTTTAGCGGCGTTTGTGGTCAAAGAGCCGCTGAAGATCAGGGTCTTTAGCGGCGTTTGAGGGG
Found at i:24653791 original size:86 final size:84
Alignment explanation
Indices: 24653529--24653797 Score: 272
Period size: 86 Copynumber: 3.1 Consensus size: 84
24653519 ATCTGCCAAA
*
24653529 TTTAGTGGCGTTTTTGGTCAAAGCGCCGCTAAAGATAATGGTCTTTAGCGGCGTTTGTGGAAAAA
1 TTTAGTGGCGTTTTTGGTCAAAGCGCCGCTAAAGATAAGGGTCTTTAGCGGCGTTTGT-G--AAA
* *
24653594 AGCGCCACTAAAGATCATAGTC
63 AGCGCCGCTAAAGATCATGGTC
* * * * * *
24653616 TTTAGTGGCGTTTGTGGTCAAAGAGCCGCTATAGATCAGGGTCTATT-GCGGCGTTTGAGGGGAA
1 TTTAGTGGCGTTTTTGGTCAAAGCGCCGCTAAAGATAAGGGTCT-TTAGCGGCGTTT--GTGAAA
* * **
24653680 AGCGCCGCTAAAGACCCTGACC
63 AGCGCCGCTAAAGATCATGGTC
*
24653702 TTTAGTGGCGTTTTTGG-GAGAAGCGCCGCTAAAGATAAGGGTCTTTAGCGGCGTTTGTGCAAGA
1 TTTAGTGGCGTTTTTGGTCA-AAGCGCCGCTAAAGATAAGGGTCTTTAGCGGCGTTTGTG-AA-A
* * * *
24653766 TGCGCCGCTGAAGATTAGGGTC
63 AGCGCCGCTAAAGATCATGGTC
*
24653788 TTTAGCGGCG
1 TTTAGTGGCG
24653798 CATTCATTAG
Statistics
Matches: 146, Mismatches: 29, Indels: 15
0.77 0.15 0.08
Matches are distributed among these distances:
84 2 0.01
85 4 0.03
86 88 0.60
87 48 0.33
88 3 0.02
89 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.27
Consensus pattern (84 bp):
TTTAGTGGCGTTTTTGGTCAAAGCGCCGCTAAAGATAAGGGTCTTTAGCGGCGTTTGTGAAAAGC
GCCGCTAAAGATCATGGTC
Found at i:24658229 original size:19 final size:18
Alignment explanation
Indices: 24658200--24658273 Score: 59
Period size: 17 Copynumber: 4.3 Consensus size: 18
24658190 CGATAATTTA
24658200 TTAAA-AATTGAATTAAG
1 TTAAATAATTGAATTAAG
* * *
24658217 TTAGATCAATTGATTTACG
1 TTAAAT-AATTGAATTAAG
24658236 --AAATAATTGAATTAAG
1 TTAAATAATTGAATTAAG
* *
24658252 TTAAA-ATTTGATTTAA-
1 TTAAATAATTGAATTAAG
24658268 TTAAAT
1 TTAAAT
24658274 CGATTTTGTA
Statistics
Matches: 44, Mismatches: 8, Indels: 10
0.71 0.13 0.16
Matches are distributed among these distances:
16 15 0.34
17 16 0.36
18 3 0.07
19 10 0.23
ACGTcount: A:0.46, C:0.03, G:0.11, T:0.41
Consensus pattern (18 bp):
TTAAATAATTGAATTAAG
Found at i:24659234 original size:20 final size:20
Alignment explanation
Indices: 24659209--24659246 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
24659199 TTTTATAAAA
*
24659209 AAAAATCATAAAATAATTTT
1 AAAAATCATAAAAAAATTTT
*
24659229 AAAAATTATAAAAAAATT
1 AAAAATCATAAAAAAATT
24659247 AAATATTAGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.32
Consensus pattern (20 bp):
AAAAATCATAAAAAAATTTT
Found at i:24659285 original size:19 final size:17
Alignment explanation
Indices: 24659247--24659331 Score: 57
Period size: 19 Copynumber: 4.6 Consensus size: 17
24659237 TAAAAAAATT
24659247 AAATATTAGAAATTATTA
1 AAATATTA-AAATTATTA
24659265 AAATGATTAAAATTATATA
1 AAAT-ATTAAAATTAT-TA
*
24659284 AACTTATTAAAAAATTA-TA
1 AA-ATATT--AAAATTATTA
* *
24659303 AAACTAATAAAACTTATTT
1 AAA-TATTAAAA-TTATTA
24659322 AAA-ATTAAAA
1 AAATATTAAAA
24659332 ACAATTTTAA
Statistics
Matches: 54, Mismatches: 5, Indels: 17
0.71 0.07 0.22
Matches are distributed among these distances:
17 10 0.19
18 14 0.26
19 22 0.41
20 1 0.02
21 7 0.13
ACGTcount: A:0.59, C:0.04, G:0.02, T:0.35
Consensus pattern (17 bp):
AAATATTAAAATTATTA
Found at i:24659837 original size:8 final size:9
Alignment explanation
Indices: 24659816--24659842 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
24659806 TTCTAATAAT
24659816 TTTTTTATA
1 TTTTTTATA
24659825 TTTTTTATA
1 TTTTTTATA
24659834 TTTTTTATA
1 TTTTTTATA
24659843 GAATTTTGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (9 bp):
TTTTTTATA
Found at i:24659989 original size:19 final size:19
Alignment explanation
Indices: 24659961--24660003 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
24659951 CTTTAAAGTA
24659961 TTTT-TAATATTTAATAAT
1 TTTTATAATATTTAATAAT
*
24659979 TTTTATAATATTTAATCAT
1 TTTTATAATATTTAATAAT
24659998 TTTTAT
1 TTTTAT
24660004 GGAAAAATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (19 bp):
TTTTATAATATTTAATAAT
Found at i:24662234 original size:7 final size:7
Alignment explanation
Indices: 24662209--24662252 Score: 70
Period size: 7 Copynumber: 6.3 Consensus size: 7
24662199 TCCATCCTAT
24662209 ATTTTCA
1 ATTTTCA
* *
24662216 ATCTTAA
1 ATTTTCA
24662223 ATTTTCA
1 ATTTTCA
24662230 ATTTTCA
1 ATTTTCA
24662237 ATTTTCA
1 ATTTTCA
24662244 ATTTTCA
1 ATTTTCA
24662251 AT
1 AT
24662253 CCTCAATCCT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
7 33 1.00
ACGTcount: A:0.32, C:0.14, G:0.00, T:0.55
Consensus pattern (7 bp):
ATTTTCA
Found at i:24667787 original size:20 final size:19
Alignment explanation
Indices: 24667764--24667828 Score: 53
Period size: 19 Copynumber: 3.3 Consensus size: 19
24667754 TTCCTACACC
24667764 ATTTGTTCATCTCCGTTTCA
1 ATTT-TTCATCTCCGTTTCA
*
24667784 ATTTTTTCCT-TCCGGATTT-A
1 A-TTTTTCATCTCC-G-TTTCA
* *
24667804 ATTTTTTATCTCCATTTCA
1 ATTTTTCATCTCCGTTTCA
24667823 ATTTTT
1 ATTTTT
24667829 TCTATACCGT
Statistics
Matches: 36, Mismatches: 4, Indels: 11
0.71 0.08 0.22
Matches are distributed among these distances:
18 3 0.08
19 16 0.44
20 11 0.31
21 6 0.17
ACGTcount: A:0.17, C:0.20, G:0.06, T:0.57
Consensus pattern (19 bp):
ATTTTTCATCTCCGTTTCA
Found at i:24667825 original size:19 final size:19
Alignment explanation
Indices: 24667772--24667829 Score: 57
Period size: 19 Copynumber: 3.0 Consensus size: 19
24667762 CCATTTGTTC
*
24667772 ATCTCCGTTTCAATTTTTT
1 ATCTCCATTTCAATTTTTT
*
24667791 -CCTTCCGGATTT-AATTTTTT
1 ATC-TCC--ATTTCAATTTTTT
24667811 ATCTCCATTTCAATTTTTT
1 ATCTCCATTTCAATTTTTT
24667830 CTATACCGTC
Statistics
Matches: 31, Mismatches: 3, Indels: 10
0.70 0.07 0.23
Matches are distributed among these distances:
18 5 0.16
19 11 0.35
20 11 0.35
21 4 0.13
ACGTcount: A:0.17, C:0.21, G:0.05, T:0.57
Consensus pattern (19 bp):
ATCTCCATTTCAATTTTTT
Found at i:24670312 original size:84 final size:86
Alignment explanation
Indices: 24670165--24670334 Score: 211
Period size: 84 Copynumber: 2.0 Consensus size: 86
24670155 TCTCCAAGTG
* * * * *
24670165 TTTGAGCTTAGTTCTAAAACATTAATGTAAAGGTTTTACTTGAGCGGATCAAACAAAATTATTCT
1 TTTGAGCTTAGTTCTAAAACATCAATGGAAAGGTCTTACTTGAGCGGACCAAAAAAAATTATTCT
*
24670230 CAGACAGT-AAAACAAAAGCA
66 AAGACAGTAAAAACAAAAGCA
* * *
24670250 TTTGA-CTTAGTTCTATAACATCAATGGACAGGTCTTATTTTG-GCGGACCAAAAAAAATTATTC
1 TTTGAGCTTAGTTCTAAAACATCAATGGAAAGGTCTTA-CTTGAGCGGACCAAAAAAAATTATTC
* *
24670313 TAAGACGGTAAAAACAGAAGCA
65 TAAGACAGTAAAAACAAAAGCA
24670335 AATAAGGTTT
Statistics
Matches: 72, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
84 53 0.74
85 19 0.26
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.29
Consensus pattern (86 bp):
TTTGAGCTTAGTTCTAAAACATCAATGGAAAGGTCTTACTTGAGCGGACCAAAAAAAATTATTCT
AAGACAGTAAAAACAAAAGCA
Found at i:24670708 original size:3 final size:3
Alignment explanation
Indices: 24670680--24670732 Score: 54
Period size: 3 Copynumber: 17.7 Consensus size: 3
24670670 AAAGGGGGAG
* * * *
24670680 GAA GAA CAA GAA GAT GAA GAA CAA GAA GAA GATA -TA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA-A GAA GAA GAA GAA
24670725 GAA GAA GA
1 GAA GAA GA
24670733 GGCAAGAGTG
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
2 1 0.03
3 38 0.95
4 1 0.03
ACGTcount: A:0.62, C:0.04, G:0.28, T:0.06
Consensus pattern (3 bp):
GAA
Found at i:24670710 original size:18 final size:18
Alignment explanation
Indices: 24670687--24670729 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
24670677 GAGGAAGAAC
24670687 AAGAAGATGA-AGAACAAG
1 AAGAAGAT-ATAGAACAAG
*
24670705 AAGAAGATATAGAAGAAG
1 AAGAAGATATAGAACAAG
24670723 AAGAAGA
1 AAGAAGA
24670730 AGAGGCAAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 1 0.04
18 22 0.96
ACGTcount: A:0.63, C:0.02, G:0.28, T:0.07
Consensus pattern (18 bp):
AAGAAGATATAGAACAAG
Found at i:24671767 original size:18 final size:18
Alignment explanation
Indices: 24671723--24671768 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 18
24671713 ATTTAATTGG
*
24671723 GACCAAATTAAAATTTAA
1 GACCAAATTAAAATTGAA
24671741 GTACCAAATTAAACATTGAA
1 G-ACCAAATTAAA-ATTGAA
24671761 G-CCAAATT
1 GACCAAATT
24671769 TAAGTGCTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
18 8 0.32
19 11 0.44
20 6 0.24
ACGTcount: A:0.50, C:0.15, G:0.09, T:0.26
Consensus pattern (18 bp):
GACCAAATTAAAATTGAA
Found at i:24671833 original size:22 final size:23
Alignment explanation
Indices: 24671788--24671834 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 23
24671778 AATTGGAATA
*
24671788 AAAAATACTCAAGTATCAAATTG
1 AAAAATACTCAAGTACCAAATTG
* *
24671811 AAAAA-ACTCAAGTCCCAATTTG
1 AAAAATACTCAAGTACCAAATTG
24671833 AA
1 AA
24671835 TATTGAAGCC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 16 0.76
23 5 0.24
ACGTcount: A:0.51, C:0.17, G:0.09, T:0.23
Consensus pattern (23 bp):
AAAAATACTCAAGTACCAAATTG
Found at i:24674085 original size:42 final size:42
Alignment explanation
Indices: 24674038--24674137 Score: 139
Period size: 42 Copynumber: 2.4 Consensus size: 42
24674028 AATGGGCCTA
*
24674038 CTCACATGAGTTGTGGGTC-AGAATGTAAACTACACGATGCTG
1 CTCACACGAGTTGTGGGTCGA-AATGTAAACTACACGATGCTG
* * *
24674080 CTCACACGAGTTATGGGTCGAAATGTAAACTATACGGTGCTG
1 CTCACACGAGTTGTGGGTCGAAATGTAAACTACACGATGCTG
*
24674122 CTCACACGAGCTGTGG
1 CTCACACGAGTTGTGG
24674138 AGAATCCACA
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
42 50 0.98
43 1 0.02
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (42 bp):
CTCACACGAGTTGTGGGTCGAAATGTAAACTACACGATGCTG
Found at i:24691007 original size:68 final size:68
Alignment explanation
Indices: 24690890--24691025 Score: 227
Period size: 68 Copynumber: 2.0 Consensus size: 68
24690880 GAGAAGATAA
* *
24690890 AGTTAAAATGGAATATTCAGAACATATAGAGACAATAAGCCCAAGAAACATTTAGGATTTTATCC
1 AGTTAAAATGGAATATTCAAAACATATAAAGACAATAAGCCCAAGAAACATTTAGGATTTTATCC
24690955 TAT
66 TAT
* **
24690958 AGTTAAAATGGAATATTCAAAACATATAAAGACAATAAGCCTATTAAACATTTAGGATTTTATCC
1 AGTTAAAATGGAATATTCAAAACATATAAAGACAATAAGCCCAAGAAACATTTAGGATTTTATCC
24691023 TAT
66 TAT
24691026 GTCTCTTGGT
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
68 63 1.00
ACGTcount: A:0.45, C:0.12, G:0.12, T:0.30
Consensus pattern (68 bp):
AGTTAAAATGGAATATTCAAAACATATAAAGACAATAAGCCCAAGAAACATTTAGGATTTTATCC
TAT
Found at i:24693734 original size:3 final size:3
Alignment explanation
Indices: 24693726--24693758 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
24693716 CAAACGAAAG
24693726 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
24693759 TGCTGAGAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:24698121 original size:16 final size:16
Alignment explanation
Indices: 24698100--24698131 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
24698090 ATTTTGTTGC
*
24698100 TAATTTTACTTTTTCA
1 TAATTTCACTTTTTCA
24698116 TAATTTCACTTTTTCA
1 TAATTTCACTTTTTCA
24698132 CTTTCAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTCACTTTTTCA
Found at i:24698322 original size:46 final size:43
Alignment explanation
Indices: 24698269--24698353 Score: 107
Period size: 46 Copynumber: 1.9 Consensus size: 43
24698259 CACAGTGGAT
*
24698269 TCAGCACACAGCAAACACCCTTTGTAATCAATGATATCCGGTGGGA
1 TCAGCACACAGCAAACA-CC-TTATAATCAATGATA-CCGGTGGGA
* * *
24698315 TCAGCACATAGCAACCACCTTATAATTAATGATACCGGT
1 TCAGCACACAGCAAACACCTTATAATCAATGATACCGGT
24698354 TCACATAATA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
43 5 0.14
44 13 0.37
45 2 0.06
46 15 0.43
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.24
Consensus pattern (43 bp):
TCAGCACACAGCAAACACCTTATAATCAATGATACCGGTGGGA
Found at i:24698420 original size:51 final size:51
Alignment explanation
Indices: 24698362--24698549 Score: 222
Period size: 51 Copynumber: 3.7 Consensus size: 51
24698352 GTTCACATAA
*
24698362 TAGCCTGCACATAGTACTACACATGTGACCATCACTATCCGATACACGTAG
1 TAGCCTGCACATAGTACTACACACGTGACCATCACTATCCGATACACGTAG
* * ** *
24698413 TAGCCTGCACATAGTACTACACACGTGATCGA--AGCTATCCGGTATGCATAG
1 TAGCCTGCACATAGTACTACACACGTGA-CCATCA-CTATCCGATACACGTAG
* * * **
24698464 TAGCCTGCACATAGTATTACACATGCGACCTATCA-T-TTTGATACACGTAG
1 TAGCCTGCACATAGTACTACACACGTGACC-ATCACTATCCGATACACGTAG
24698514 TAGCCTGCACATAGTACTACACACGTGACCATCACT
1 TAGCCTGCACATAGTACTACACACGTGACCATCACT
24698550 TTCACTTTCA
Statistics
Matches: 112, Mismatches: 19, Indels: 13
0.78 0.13 0.09
Matches are distributed among these distances:
49 4 0.04
50 38 0.34
51 67 0.60
52 2 0.02
53 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (51 bp):
TAGCCTGCACATAGTACTACACACGTGACCATCACTATCCGATACACGTAG
Found at i:24698523 original size:101 final size:102
Alignment explanation
Indices: 24698357--24698541 Score: 302
Period size: 101 Copynumber: 1.8 Consensus size: 102
24698347 TACCGGTTCA
*
24698357 CATAATAGCCTGCACATAGTACTACACATGTGACCATCACTATCCGATACACGTAGTAGCCTGCA
1 CATAATAGCCTGCACATAGTACTACACATGCGACCATCACTATCCGATACACGTAGTAGCCTGCA
24698422 CATAGTACTACACACGTGATCGAAGCTATCCGGTATG
66 CATAGTACTACACACGTGATCGAAGCTATCCGGTATG
* * **
24698459 CATAGTAGCCTGCACATAGTATTACACATGCGACCTATCA-T-TTTGATACACGTAGTAGCCTGC
1 CATAATAGCCTGCACATAGTACTACACATGCGACC-ATCACTATCCGATACACGTAGTAGCCTGC
24698522 ACATAGTACTACACACGTGA
65 ACATAGTACTACACACGTGA
24698542 CCATCACTTT
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
101 40 0.52
102 33 0.43
103 4 0.05
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.25
Consensus pattern (102 bp):
CATAATAGCCTGCACATAGTACTACACATGCGACCATCACTATCCGATACACGTAGTAGCCTGCA
CATAGTACTACACACGTGATCGAAGCTATCCGGTATG
Found at i:24698564 original size:101 final size:102
Alignment explanation
Indices: 24698353--24698579 Score: 268
Period size: 101 Copynumber: 2.2 Consensus size: 102
24698343 ATGATACCGG
* *
24698353 TTCACATAATAGCCTGCACATAGTACTACACATGTGACCATCACTATCCGATACACGTAGTAGCC
1 TTCACATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTATCCGATACACGTAGTAGCC
*
24698418 TGCACATAGTACTACACACGTGATCGAAGCTATCCGGT
66 TGCACATAGTACTACACACGTGATCCAAGCTATCC-GT
* * * **
24698456 AT-GCATAGTAGCCTGCACATAGTATTACACATGCGACCTATCA-T-TTTGATACACGTAGTAGC
1 TTCACATAGTAGCCTGCACATAGTACTACACATGCGACC-ATCACTATCCGATACACGTAGTAGC
*
24698518 CTGCACATAGTACTACACACGTGA-CCATCA-CTTTCAC-T
65 CTGCACATAGTACTACACACGTGATCCA--AGCTATC-CGT
* *
24698556 TTCACATAGTGGCCTACACATAGT
1 TTCACATAGTAGCCTGCACATAGT
24698580 CTATGCCACA
Statistics
Matches: 106, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
100 4 0.04
101 62 0.58
102 35 0.33
103 5 0.05
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.26
Consensus pattern (102 bp):
TTCACATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTATCCGATACACGTAGTAGCC
TGCACATAGTACTACACACGTGATCCAAGCTATCCGT
Found at i:24701403 original size:42 final size:42
Alignment explanation
Indices: 24701323--24701404 Score: 112
Period size: 42 Copynumber: 2.0 Consensus size: 42
24701313 CGTTTTCTCT
* **
24701323 ATGCCATAGTCCAACTATGGTCTTACACATATTTACATATTG
1 ATGCCATAGCCCAACTATGGTCTTACACATATGCACATATTG
*
24701365 ATGCCATAGCCCAGCTATGGTCTTACACAGTA-GCACATAT
1 ATGCCATAGCCCAACTATGGTCTTACACA-TATGCACATAT
24701405 CACACCGATG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
42 33 0.94
43 2 0.06
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.30
Consensus pattern (42 bp):
ATGCCATAGCCCAACTATGGTCTTACACATATGCACATATTG
Found at i:24701434 original size:47 final size:48
Alignment explanation
Indices: 24701364--24701456 Score: 116
Period size: 47 Copynumber: 2.0 Consensus size: 48
24701354 TTTACATATT
* * *
24701364 GATGCCATAGCCCAGCTATGGTCTTACACAG-TAGCACATATCACACC
1 GATGCCATAGCCCAGATACGGTCTTACACAGAAAGCACATATCACACC
* * * *
24701411 GATGCCATATCTCAGATACGGTCTTATACAGAAATCACATATCACA
1 GATGCCATAGCCCAGATACGGTCTTACACAGAAAGCACATATCACA
24701457 TGTTGCCATG
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
47 26 0.68
48 12 0.32
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.24
Consensus pattern (48 bp):
GATGCCATAGCCCAGATACGGTCTTACACAGAAAGCACATATCACACC
Found at i:24704205 original size:16 final size:16
Alignment explanation
Indices: 24704184--24704215 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
24704174 GTTTTGTTGC
*
24704184 TAATTTTACTTTTTCA
1 TAATTTCACTTTTTCA
24704200 TAATTTCACTTTTTCA
1 TAATTTCACTTTTTCA
24704216 CTTTCAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTCACTTTTTCA
Found at i:24704504 original size:51 final size:51
Alignment explanation
Indices: 24704446--24704631 Score: 222
Period size: 51 Copynumber: 3.7 Consensus size: 51
24704436 GTTCACATAA
*
24704446 TAGCCTGCACATAGTACTACACATGTGACCATCACTATCCGGTACACGTAG
1 TAGCCTGCACATAGTACTACACATGTGACCATCACTATTCGGTACACGTAG
* * ** *
24704497 TAGCCTGCACATAGTACTACACACGTGATCGA--AGCTATTCGGTATGCATAG
1 TAGCCTGCACATAGTACTACACATGTGA-CCATCA-CTATTCGGTACACGTAG
* * *
24704548 TAGCCTGCACATAGTATTACACATGCGACCTATCA-T-TTTGGTACACGTAG
1 TAGCCTGCACATAGTACTACACATGTGACC-ATCACTATTCGGTACACGTAG
24704598 TAGCCTGCACATAGTACTACAC--GTGACCATCACT
1 TAGCCTGCACATAGTACTACACATGTGACCATCACT
24704632 TTCACTTTCA
Statistics
Matches: 113, Mismatches: 16, Indels: 15
0.78 0.11 0.10
Matches are distributed among these distances:
47 4 0.04
48 6 0.05
50 33 0.29
51 67 0.59
52 2 0.02
53 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (51 bp):
TAGCCTGCACATAGTACTACACATGTGACCATCACTATTCGGTACACGTAG
Found at i:24709021 original size:89 final size:89
Alignment explanation
Indices: 24708849--24709023 Score: 323
Period size: 89 Copynumber: 2.0 Consensus size: 89
24708839 CAATTTGATA
* *
24708849 TTTTATTATGTTTTTTGGATTATTGGGGTAAAAAGGTCAAGAAAGATGTATGGTACAATATTTTT
1 TTTTATTATATTTTTTGGATTATTGGGGTAAAAAGGTCAAGAAAGATGTATGGTACAACATTTTT
24708914 ACCTAAATAATATAAAAAATAATG
66 ACCTAAATAATATAAAAAATAATG
24708938 TTTTATTATATTTTTTGGATTATTGGGGTAAAAAGGTCAAGAAACGATGTATGGTACAACATTTT
1 TTTTATTATATTTTTTGGATTATTGGGGTAAAAAGGTCAAGAAA-GATGTATGGTACAACATTTT
24709003 TACCTAAATAATATAAAAAAT
65 TACCTAAATAATATAAAAAAT
24709024 TAATTAAATA
Statistics
Matches: 83, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
89 43 0.52
90 40 0.48
ACGTcount: A:0.39, C:0.06, G:0.16, T:0.39
Consensus pattern (89 bp):
TTTTATTATATTTTTTGGATTATTGGGGTAAAAAGGTCAAGAAAGATGTATGGTACAACATTTTT
ACCTAAATAATATAAAAAATAATG
Found at i:24711666 original size:30 final size:31
Alignment explanation
Indices: 24711610--24711669 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
24711600 GGATGTGGGA
*
24711610 TGGGAAGGGAATAAAAGTTTTAGGGGAAAAG
1 TGGGAAGGGAATAAAAATTTTAGGGGAAAAG
* *
24711641 TGGGAA-GGAGTAAAAATTTTGGGGGAAAA
1 TGGGAAGGGAATAAAAATTTTAGGGGAAAA
24711670 TAAAAGGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 20 0.77
31 6 0.23
ACGTcount: A:0.42, C:0.00, G:0.38, T:0.20
Consensus pattern (31 bp):
TGGGAAGGGAATAAAAATTTTAGGGGAAAAG
Found at i:24715014 original size:18 final size:18
Alignment explanation
Indices: 24714991--24715026 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
24714981 TCGTCAAAAA
24714991 CTACTTTACAAAATAGTC
1 CTACTTTACAAAATAGTC
24715009 CTACTTTACAAAATAGTC
1 CTACTTTACAAAATAGTC
24715027 TTAACTAACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.22, G:0.06, T:0.33
Consensus pattern (18 bp):
CTACTTTACAAAATAGTC
Found at i:24725723 original size:26 final size:26
Alignment explanation
Indices: 24725694--24725747 Score: 67
Period size: 25 Copynumber: 2.1 Consensus size: 26
24725684 TAATTAGTAT
*
24725694 AAAATATT-AATAATTCAAT-AAATTG
1 AAAA-ATTAAATAATTAAATAAAATTG
*
24725719 AAAAATTAAATACTTAAATAAAATTG
1 AAAAATTAAATAATTAAATAAAATTG
24725745 AAA
1 AAA
24725748 TTTAGGAGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 3 0.12
25 13 0.52
26 9 0.36
ACGTcount: A:0.61, C:0.04, G:0.04, T:0.31
Consensus pattern (26 bp):
AAAAATTAAATAATTAAATAAAATTG
Found at i:24726512 original size:16 final size:15
Alignment explanation
Indices: 24726487--24726520 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
24726477 AAACTTGATA
*
24726487 ATAATTAATATATATT
1 ATAATAAATATA-ATT
24726503 ATAATAAATATAATT
1 ATAATAAATATAATT
24726518 ATA
1 ATA
24726521 TACTAGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
ATAATAAATATAATT
Found at i:24733496 original size:15 final size:15
Alignment explanation
Indices: 24733473--24733528 Score: 58
Period size: 16 Copynumber: 3.6 Consensus size: 15
24733463 TTATTTTAAA
24733473 AAATATATAAAATAT
1 AAATATATAAAATAT
* *
24733488 AAATTTATAAAATAAA
1 AAATATATAAAAT-AT
* *
24733504 AAATATATACAATTAA
1 AAATATATA-AAATAT
24733520 AAATATATA
1 AAATATATA
24733529 TAAAAAAGGC
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
15 12 0.34
16 20 0.57
17 3 0.09
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (15 bp):
AAATATATAAAATAT
Found at i:24733512 original size:16 final size:16
Alignment explanation
Indices: 24733469--24733533 Score: 78
Period size: 15 Copynumber: 4.0 Consensus size: 16
24733459 ATTATTATTT
24733469 TAAAAAATATATAAAA
1 TAAAAAATATATAAAA
* *
24733485 T-ATAAATTTATAAAA
1 TAAAAAATATATAAAA
*
24733500 TAAAAAATATATACAAT
1 TAAAAAATATATA-AAA
24733517 TAAAAATATATATAAAA
1 TAAAAA-ATATATAAAA
24733534 AAGGCTATAA
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
15 13 0.32
16 10 0.25
17 10 0.25
18 7 0.17
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.31
Consensus pattern (16 bp):
TAAAAAATATATAAAA
Found at i:24737519 original size:11 final size:11
Alignment explanation
Indices: 24737503--24737532 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
24737493 ATTAGATCTC
*
24737503 TACTTCTTTTA
1 TACTTCTTCTA
24737514 TACTTCTTCTA
1 TACTTCTTCTA
24737525 TACTTCTT
1 TACTTCTT
24737533 ATGCCTATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.17, C:0.23, G:0.00, T:0.60
Consensus pattern (11 bp):
TACTTCTTCTA
Found at i:24737687 original size:17 final size:18
Alignment explanation
Indices: 24737657--24737756 Score: 61
Period size: 19 Copynumber: 5.7 Consensus size: 18
24737647 ATTTTATAAC
24737657 AATA-ATAT-AAAATTTA
1 AATATATATAAAAATTTA
* *
24737673 AATTTAT-TAAAAATTAAA
1 AATATATATAAAAATT-TA
*
24737691 AATATATATAAATATTTA
1 AATATATATAAAAATTTA
**
24737709 AA-ATAACTATAAATTTTTA
1 AATAT-A-TATAAAAATTTA
*
24737728 AAT-T-TATAAAAATATA
1 AATATATATAAAAATTTA
24737744 CAA-ATATATAAAA
1 -AATATATATAAAA
24737757 GAACCAAAAA
Statistics
Matches: 65, Mismatches: 9, Indels: 18
0.71 0.10 0.20
Matches are distributed among these distances:
16 13 0.20
17 13 0.20
18 18 0.28
19 21 0.32
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (18 bp):
AATATATATAAAAATTTA
Found at i:24737711 original size:19 final size:19
Alignment explanation
Indices: 24737657--24737742 Score: 67
Period size: 19 Copynumber: 4.8 Consensus size: 19
24737647 ATTTTATAAC
24737657 AATA-ATATAAA-ATTT-A
1 AATATATATAAATATTTAA
* * *
24737673 AATTTAT-TAAAAATTAAA
1 AATATATATAAATATTTAA
24737691 AATATATATAAATATTTAA
1 AATATATATAAATATTTAA
*
24737710 AATA-ACTATAAAT-TTTTA
1 AATATA-TATAAATATTTAA
* *
24737728 AATTTATAAAAATAT
1 AATATATATAAATAT
24737743 ACAAATATAT
Statistics
Matches: 55, Mismatches: 8, Indels: 11
0.74 0.11 0.15
Matches are distributed among these distances:
16 7 0.13
17 5 0.09
18 21 0.38
19 22 0.40
ACGTcount: A:0.58, C:0.01, G:0.00, T:0.41
Consensus pattern (19 bp):
AATATATATAAATATTTAA
Found at i:24737723 original size:36 final size:34
Alignment explanation
Indices: 24737657--24737723 Score: 80
Period size: 36 Copynumber: 1.9 Consensus size: 34
24737647 ATTTTATAAC
* * *
24737657 AATAATATAAAATTTAAATTTATTAAAAATTAAA
1 AATAATATAAAATTTAAAATAACTAAAAATTAAA
*
24737691 AATATATATAAATATTTAAAATAACTATAAATT
1 AATA-ATATAAA-ATTTAAAATAACTAAAAATT
24737724 TTTAAATTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
34 4 0.15
35 7 0.26
36 16 0.59
ACGTcount: A:0.60, C:0.01, G:0.00, T:0.39
Consensus pattern (34 bp):
AATAATATAAAATTTAAAATAACTAAAAATTAAA
Found at i:24738773 original size:18 final size:18
Alignment explanation
Indices: 24738734--24738786 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
24738724 TCTAAAAATT
* *
24738734 AAATTTAAAATTATTA-AT
1 AAATTTAAAAATA-TACAA
24738752 AAATTTAAAAATATACAA
1 AAATTTAAAAATATACAA
*
24738770 AAATGATAAAAATATAC
1 AAAT-TTAAAAATATAC
24738787 TCCCCCTCTT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
17 2 0.07
18 17 0.57
19 11 0.37
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.32
Consensus pattern (18 bp):
AAATTTAAAAATATACAA
Found at i:24739139 original size:27 final size:27
Alignment explanation
Indices: 24739099--24739153 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
24739089 GACGAACTTC
* *
24739099 TTCACCGCTTAGATCTCTCAAATGGGT
1 TTCACCACTCAGATCTCTCAAATGGGT
24739126 TTCACCACTCAGATCTCTCAAATGGGT
1 TTCACCACTCAGATCTCTCAAATGGGT
24739153 T
1 T
24739154 AGCTATTACA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.24, C:0.27, G:0.16, T:0.33
Consensus pattern (27 bp):
TTCACCACTCAGATCTCTCAAATGGGT
Found at i:24750325 original size:55 final size:55
Alignment explanation
Indices: 24750241--24750350 Score: 202
Period size: 55 Copynumber: 2.0 Consensus size: 55
24750231 AAATAGGCTC
* *
24750241 TGTCAACACATGTTATAGATACTTTTTCATTTTGCATAATTTTCTCCTTAGATCT
1 TGTCAACACATGTTATAGACACTTTTTCATTTTGCATAATTTTCTCATTAGATCT
24750296 TGTCAACACATGTTATAGACACTTTTTCATTTTGCATAATTTTCTCATTAGATCT
1 TGTCAACACATGTTATAGACACTTTTTCATTTTGCATAATTTTCTCATTAGATCT
24750351 AGGCTTTAGA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 53 1.00
ACGTcount: A:0.26, C:0.18, G:0.09, T:0.46
Consensus pattern (55 bp):
TGTCAACACATGTTATAGACACTTTTTCATTTTGCATAATTTTCTCATTAGATCT
Found at i:24754225 original size:27 final size:27
Alignment explanation
Indices: 24754187--24754253 Score: 89
Period size: 27 Copynumber: 2.5 Consensus size: 27
24754177 GCATTTTGTG
*
24754187 AGCCTTTGTGGCAAACTCTGAAAAAAT
1 AGCCTTTGTGGCAAACTCTGAAAAAAC
* **
24754214 AGCCTTTGTGGCGAACTCTGAATGAAC
1 AGCCTTTGTGGCAAACTCTGAAAAAAC
*
24754241 AACCTTTGTGGCA
1 AGCCTTTGTGGCA
24754254 TACCCTAATT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (27 bp):
AGCCTTTGTGGCAAACTCTGAAAAAAC
Found at i:24762887 original size:19 final size:19
Alignment explanation
Indices: 24762842--24762890 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
24762832 TTGTTGTATT
24762842 GTTGATGTTGTTTATTTGG
1 GTTGATGTTGTTTATTTGG
** *
24762861 ACTCATGTTGTTTATTTGG
1 GTTGATGTTGTTTATTTGG
24762880 GTTGATGTTGT
1 GTTGATGTTGT
24762891 GTTGCTTTTA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.12, C:0.04, G:0.29, T:0.55
Consensus pattern (19 bp):
GTTGATGTTGTTTATTTGG
Found at i:24771979 original size:31 final size:31
Alignment explanation
Indices: 24771912--24771980 Score: 75
Period size: 31 Copynumber: 2.2 Consensus size: 31
24771902 GACAAAAAAA
* ** * *
24771912 AAGTTCAAGCCCCACTGTGTTAACAGTTGCC
1 AAGTTCAAGCCCCAATGTGGAAACAATTACC
* *
24771943 TAGTTCATGCCCCAATGTGGAAACAATTACC
1 AAGTTCAAGCCCCAATGTGGAAACAATTACC
24771974 AAGTTCA
1 AAGTTCA
24771981 GGTCCTAAAT
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (31 bp):
AAGTTCAAGCCCCAATGTGGAAACAATTACC
Found at i:24772964 original size:25 final size:25
Alignment explanation
Indices: 24772931--24772982 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
24772921 ACCTACACTA
*
24772931 ATCAGAGTTTAAGTGGGAAACTAAT
1 ATCAAAGTTTAAGTGGGAAACTAAT
*
24772956 ATCAAAGTTTAAGTGTGAAACTAAT
1 ATCAAAGTTTAAGTGGGAAACTAAT
24772981 AT
1 AT
24772983 TAAAATAACA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.42, C:0.08, G:0.19, T:0.31
Consensus pattern (25 bp):
ATCAAAGTTTAAGTGGGAAACTAAT
Found at i:24773019 original size:69 final size:69
Alignment explanation
Indices: 24772908--24773036 Score: 195
Period size: 69 Copynumber: 1.9 Consensus size: 69
24772898 ATAGGTAAAA
* * * ** * *
24772908 TAATATTAAAATAACCTACACTAATCAGAGTTTAAGTGGGAAACTAATATCAAAGTTTAAGTGTG
1 TAATATTAAAATAACATACACTAATAAAAGTTTAAGCAGGAAACTAAAAACAAAGTTTAAGTGTG
24772973 AAAC
66 AAAC
24772977 TAATATTAAAATAACATACACTAATAAAAGTTTAAGCAGGAAACTAAAAACAAAGTTTAA
1 TAATATTAAAATAACATACACTAATAAAAGTTTAAGCAGGAAACTAAAAACAAAGTTTAA
24773037 CTGGGAGAAG
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
69 53 1.00
ACGTcount: A:0.50, C:0.11, G:0.12, T:0.27
Consensus pattern (69 bp):
TAATATTAAAATAACATACACTAATAAAAGTTTAAGCAGGAAACTAAAAACAAAGTTTAAGTGTG
AAAC
Found at i:24775538 original size:31 final size:29
Alignment explanation
Indices: 24775476--24775546 Score: 88
Period size: 29 Copynumber: 2.4 Consensus size: 29
24775466 AAATTTAAAC
* *
24775476 TTCATATATAAAATTACATAAAATCAAAA
1 TTCATGTATAAAATTACATAAAACCAAAA
* *
24775505 TTCTTGTATAAAATTACATATTAGACCAAAA
1 TTCATGTATAAAATTACATA--AAACCAAAA
24775536 TTCATGTATAA
1 TTCATGTATAA
24775547 TTTTAAGATT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
29 18 0.51
31 17 0.49
ACGTcount: A:0.49, C:0.11, G:0.04, T:0.35
Consensus pattern (29 bp):
TTCATGTATAAAATTACATAAAACCAAAA
Found at i:24778607 original size:21 final size:21
Alignment explanation
Indices: 24778583--24778626 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
24778573 AGAATGCACG
24778583 TATATATATG-TATAATAATAA
1 TATATA-ATGTTATAATAATAA
24778604 TATATAATGTTATAATAATAA
1 TATATAATGTTATAATAATAA
24778625 TA
1 TA
24778627 GCAATATTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 3 0.14
21 19 0.86
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (21 bp):
TATATAATGTTATAATAATAA
Found at i:24780580 original size:89 final size:89
Alignment explanation
Indices: 24780451--24781338 Score: 581
Period size: 89 Copynumber: 10.1 Consensus size: 89
24780441 TGTCTATGTA
* ** * *
24780451 GGAAGGCAAGATCTTCTATATTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTATTTTCT
1 GGAAGACAAGATCTGGTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCT
* *
24780516 TTGATCTACTTCGCCACCAGTACG
66 TCGATCTACTTCGCCACCAGTATG
24780540 GGAAGACAAGATCTGGTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTTT
1 GGAAGACAAGATCTGGTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTG--TTTT
* * *
24780605 CAATCGATTCCAC-T-GCCGACC-GGA-G
64 C-TTCGA-TCTACTTCGCC-ACCAGTATG
* ** ** * * * * * * * ** * ***
24780630 AGGTAGA-ATTA-CTGG---CTTCAATATACTCCACTGCAACTTCAGGGAGGTAAAATCTGCCAT
1 -GGAAGACAAGATCTGGTATCTTTGATCTACTTCAC-GCCAGTACATGAAGACAAGATCTGTTTT
* * * * *
24780690 CTTCGATCTGCTCCACTA-CTGCT-TAG
64 CTTCGATCTACTTCGCCACCAG-TAT-G
* * * * * * *
24780716 GG-AGGCAAAATCT-GTAATCTTTAATCTACTTTGC-CGTCGGT--ATG--G-GAAGA--TG-TA
1 GGAAGACAAGATCTGGT-ATCTTTGATCTAC-TT-CACGCCAGTACATGAAGACAAGATCTGTTT
* * * * *
24780770 TATTCGATCCACTTCGCTACCAATATA
63 TCTTCGATCTACTTCGCCACCAGTATG
* * ** *
24780797 GGAAGACAGGACCTACTATCTTTGATCTACTTCACGCCAGTACATGAAGACACGATCTGTTTTCT
1 GGAAGACAAGATCTGGTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCT
* * *
24780862 TCGACCTACTCCACCACCAGTATG
66 TCGATCTACTTCGCCACCAGTATG
* * * *
24780886 GGGAGACAAGATCT-GTTTCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCT
1 GGAAGACAAGATCTGGTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCT
* * *
24780950 TTGATCTACTCCACCACCAGTATG
66 TCGATCTACTTCGCCACCAGTATG
* * * * * *
24780974 GGGAGACAAGATCTGTTGA-CTTTAATCTACTTCACG-CTGATACATGAAGGCAAGATCTGCTTT
1 GGAAGACAAGATCTGGT-ATCTTTGATCTACTTCACGCCAG-TACATGAAGACAAGATCTGTTTT
* * *
24781037 CTTTGATCTACTCCACCACCAGTATG
64 CTTCGATCTACTTCGCCACCAGTATG
* * ** * **
24781063 GGGAGACAAGATCTGTTGA-CTTTGATCTACTTCACG-TTGATACATGAAGACAATATCTACTTT
1 GGAAGACAAGATCTGGT-ATCTTTGATCTACTTCACGCCAG-TACATGAAGACAAGATCTGTTTT
*
24781126 CTTTCGATCTGCTTCGCCACCAGTATG
64 C-TTCGATCTACTTCGCCACCAGTATG
* * * * * *
24781153 GGAAGGCGAGATCT-GTATATTCGATCTACTTCACGCTAGTACATGAAGACAAGATCTGTATTCC
1 GGAAGACAAGATCTGGTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGT-TTTC
*
24781217 TTCGATCTGCTTCGCCACCAGTATG
65 TTCGATCTACTTCGCCACCAGTATG
* * * *
24781242 GGAAGGCGAGATCTGTTATCTTTGATCTACTTCACGCCAGTACATAAAGACAAGATCTGCTTTTT
1 GGAAGACAAGATCTGGTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTG--TTTT
* *
24781307 CCTTCAATCTGCTTCGCCACCAGTATG
64 -CTTCGATCTACTTCGCCACCAGTATG
24781334 GGAAG
1 GGAAG
24781339 GCGAAATCTG
Statistics
Matches: 636, Mismatches: 118, Indels: 87
0.76 0.14 0.10
Matches are distributed among these distances:
80 1 0.00
81 25 0.04
82 23 0.04
83 8 0.01
84 11 0.02
85 10 0.02
86 18 0.03
87 18 0.03
88 85 0.13
89 296 0.47
90 81 0.13
91 18 0.03
92 38 0.06
93 4 0.01
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (89 bp):
GGAAGACAAGATCTGGTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCT
TCGATCTACTTCGCCACCAGTATG
Found at i:24780598 original size:44 final size:44
Alignment explanation
Indices: 24780452--24780600 Score: 190
Period size: 44 Copynumber: 3.4 Consensus size: 44
24780442 GTCTATGTAG
* * *
24780452 GAAGGCAAGATCTTCTATATTTGATCTACTTCACGCCAGTACAT
1 GAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAGTACAT
** * * * **
24780496 GAAGACAAGATCTATTTTCTTTGATCTACTTCGCCACCAGTACGG
1 GAAGACAAGATCTGCTATCTTTGATCTACTTC-ACGCCAGTACAT
*
24780541 GAAGACAAGATCTGGTATCTTTGATCTACTTCACGCCAGTACAT
1 GAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAGTACAT
24780585 GAAGACAAGATCTGCT
1 GAAGACAAGATCTGCT
24780601 TTTTCAATCG
Statistics
Matches: 87, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
44 50 0.57
45 37 0.43
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.30
Consensus pattern (44 bp):
GAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAGTACAT
Found at i:24780848 original size:44 final size:44
Alignment explanation
Indices: 24780815--24781304 Score: 321
Period size: 44 Copynumber: 11.0 Consensus size: 44
24780805 GGACCTACTA
* *
24780815 TCTTTGATCTACTTCACGCCAGTACATGAAGACACGATCTGTTT
1 TCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTT
* * * * *** *
24780859 TCTTCGACCTACTCCACCACCAGTATGGGGAGACAAGATCTG-TT
1 TCTTTGATCTACTTCA-CGCCAGTACATGAAGACAAGATCTGCTT
*
24780903 TCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
1 TCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTT
* * *** *
24780947 TCTTTGATCTACTCCACCACCAGTATGGGGAGACAAGATCTG-TT
1 TCTTTGATCTACTTCA-CGCCAGTACATGAAGACAAGATCTGCTT
* * * *
24780991 GACTTTAATCTACTTCACG-CTGATACATGAAGGCAAGATCTGCTT
1 -TCTTTGATCTACTTCACGCCAG-TACATGAAGACAAGATCTGCTT
* * *** *
24781036 TCTTTGATCTACTCCACCACCAGTATGGGGAGACAAGATCTG-TT
1 TCTTTGATCTACTTCA-CGCCAGTACATGAAGACAAGATCTGCTT
* ** * *
24781080 GACTTTGATCTACTTCACG-TTGATACATGAAGACAATATCTACTT
1 -TCTTTGATCTACTTCACGCCAG-TACATGAAGACAAGATCTGCTT
* * * *** * * *
24781125 TCTTTCGATCTGCTTCGCCACCAGTATGGGAAGGCGAGATCTG-TA
1 TCTTT-GATCTACTTC-ACGCCAGTACATGAAGACAAGATCTGCTT
* * *
24781170 TATTCGATCTACTTCACGCTAGTACATGAAGACAAGATCTG-TAT
1 TCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCT-T
* * * * *** * *
24781214 TCCTTCGATCTGCTTCGCCACCAGTATGGGAAGGCGAGATCTG-TT
1 T-CTTTGATCTACTTC-ACGCCAGTACATGAAGACAAGATCTGCTT
*
24781259 ATCTTTGATCTACTTCACGCCAGTACATAAAGACAAGATCTGCTT
1 -TCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTT
24781304 T
1 T
24781305 TTCCTTCAAT
Statistics
Matches: 325, Mismatches: 102, Indels: 38
0.70 0.22 0.08
Matches are distributed among these distances:
43 41 0.13
44 124 0.38
45 124 0.38
46 35 0.11
47 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (44 bp):
TCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTT
Found at i:24780893 original size:45 final size:45
Alignment explanation
Indices: 24780844--24781093 Score: 238
Period size: 45 Copynumber: 5.6 Consensus size: 45
24780834 CAGTACATGA
* * *
24780844 AGACACGATCTGTTTTCTTCGACCTACTCCACCACCAGTATGGGG
1 AGACAAGATCTGTTTTCTTTGATCTACTCCACCACCAGTATGGGG
* * * *** *
24780889 AGACAAGATCTG-TTTCTTTGATCTACTTCA-CGCCAATACATGA
1 AGACAAGATCTGTTTTCTTTGATCTACTCCACCACCAGTATGGGG
*
24780932 AGACAAGATCTGCTTTCTTTGATCTACTCCACCACCAGTATGGGG
1 AGACAAGATCTGTTTTCTTTGATCTACTCCACCACCAGTATGGGG
** * * * * *** *
24780977 AGACAAGATCTGTTGACTTTAATCTACTTCA-C-GCTGATACATGA
1 AGACAAGATCTGTTTTCTTTGATCTACTCCACCACCAG-TATGGGG
* *
24781021 AGGCAAGATCTGCTTTCTTTGATCTACTCCACCACCAGTATGGGG
1 AGACAAGATCTGTTTTCTTTGATCTACTCCACCACCAGTATGGGG
**
24781066 AGACAAGATCTGTTGACTTTGATCTACT
1 AGACAAGATCTGTTTTCTTTGATCTACT
24781094 TCACGTTGAT
Statistics
Matches: 156, Mismatches: 44, Indels: 10
0.74 0.21 0.05
Matches are distributed among these distances:
43 21 0.13
44 61 0.39
45 72 0.46
46 2 0.01
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.30
Consensus pattern (45 bp):
AGACAAGATCTGTTTTCTTTGATCTACTCCACCACCAGTATGGGG
Found at i:24782771 original size:47 final size:46
Alignment explanation
Indices: 24782702--24782790 Score: 126
Period size: 47 Copynumber: 1.9 Consensus size: 46
24782692 TATTTTTTTA
* *
24782702 TTTTTTTACTCAAGGCTCCCTTTGTAGGGTTTCACCCTGGTCTCCT
1 TTTTTTTACTCAAAGCTCCCTTTGTAGGCTTTCACCCTGGTCTCCT
*
24782748 TTTTTTTGACTCAAAGCGT-CCTTTGTAGGCTTTCACCTTGGTC
1 TTTTTTT-ACTCAAAGC-TCCCTTTGTAGGCTTTCACCCTGGTC
24782791 CCACCTTTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
46 7 0.18
47 30 0.79
48 1 0.03
ACGTcount: A:0.12, C:0.26, G:0.18, T:0.44
Consensus pattern (46 bp):
TTTTTTTACTCAAAGCTCCCTTTGTAGGCTTTCACCCTGGTCTCCT
Found at i:24782800 original size:47 final size:47
Alignment explanation
Indices: 24782702--24782801 Score: 114
Period size: 47 Copynumber: 2.1 Consensus size: 47
24782692 TATTTTTTTA
* * * **
24782702 TTTTTTTACTCAAGGCTCCCTTTGTAGGGTTTCACCCTGGTCTCCTT
1 TTTTTTGACTCAAAGCTCCCTTTGTAGGCTTTCACCCTGGTCTCCCC
*
24782749 TTTTTTGACTCAAAGCGT-CCTTTGTAGGCTTTCACCTTGGTC-CCACC
1 TTTTTTGACTCAAAGC-TCCCTTTGTAGGCTTTCACCCTGGTCTCC-CC
24782796 TTTTTT
1 TTTTTT
24782802 AAGCAGAGTA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
46 2 0.04
47 42 0.93
48 1 0.02
ACGTcount: A:0.12, C:0.27, G:0.16, T:0.45
Consensus pattern (47 bp):
TTTTTTGACTCAAAGCTCCCTTTGTAGGCTTTCACCCTGGTCTCCCC
Found at i:24783593 original size:18 final size:18
Alignment explanation
Indices: 24783569--24783607 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
24783559 TGGTTTGGCA
*
24783569 GAAAAAATC-TAAAAAAT
1 GAAAAAAACGTAAAAAAT
*
24783586 GAAAAAAACGTAAAGAAT
1 GAAAAAAACGTAAAAAAT
24783604 GAAA
1 GAAA
24783608 GAACATTTGC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 8 0.42
18 11 0.58
ACGTcount: A:0.69, C:0.05, G:0.13, T:0.13
Consensus pattern (18 bp):
GAAAAAAACGTAAAAAAT
Found at i:24785515 original size:19 final size:20
Alignment explanation
Indices: 24785491--24785530 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
24785481 AAAGGTTTTT
* *
24785491 AATGCATATG-ATGCAATGA
1 AATGCAAATGCATGAAATGA
24785510 AATGCAAATGCATGAAATGA
1 AATGCAAATGCATGAAATGA
24785530 A
1 A
24785531 TGCGAAAAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.47, C:0.10, G:0.20, T:0.23
Consensus pattern (20 bp):
AATGCAAATGCATGAAATGA
Found at i:24787943 original size:21 final size:21
Alignment explanation
Indices: 24787919--24787962 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
24787909 AGAATGCACG
24787919 TATATATATG-TATAATAATAA
1 TATATA-ATGTTATAATAATAA
24787940 TATATAATGTTATAATAATAA
1 TATATAATGTTATAATAATAA
24787961 TA
1 TA
24787963 GCAATATTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 3 0.14
21 19 0.86
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (21 bp):
TATATAATGTTATAATAATAA
Found at i:24790810 original size:14 final size:14
Alignment explanation
Indices: 24790787--24790817 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
24790777 TTTTTAGTAA
*
24790787 AATAGGTAAAATAT
1 AATAGATAAAATAT
24790801 AATAGATAAAATAT
1 AATAGATAAAATAT
24790815 AAT
1 AAT
24790818 TTAATTCTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.10, T:0.29
Consensus pattern (14 bp):
AATAGATAAAATAT
Found at i:24796789 original size:80 final size:81
Alignment explanation
Indices: 24796654--24796809 Score: 296
Period size: 80 Copynumber: 1.9 Consensus size: 81
24796644 AGGAAAAATC
24796654 AAATTGAAGTGGAGTGAGAGGGGTGAGGATGGGTGCATCCAATATTCATGAGGTGGTAGTGGTTT
1 AAATTGAAGTGGAGT-AGAGGGGTGAGGATGGGTGCATCCAATATTCATGAGGTGGTAGTGGTTT
24796719 TCAAGATTATAAAATTT
65 TCAAGATTATAAAATTT
24796736 AAATTGAAGTGGAGT-GAGGGGTGAGGATGGGTGCATCCAATATTCATGAGGTGGTAGTGGTTTT
1 AAATTGAAGTGGAGTAGAGGGGTGAGGATGGGTGCATCCAATATTCATGAGGTGGTAGTGGTTTT
24796800 CAAGATTATA
66 CAAGATTATA
24796810 CATTCATAGT
Statistics
Matches: 74, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
80 59 0.80
82 15 0.20
ACGTcount: A:0.29, C:0.06, G:0.34, T:0.30
Consensus pattern (81 bp):
AAATTGAAGTGGAGTAGAGGGGTGAGGATGGGTGCATCCAATATTCATGAGGTGGTAGTGGTTTT
CAAGATTATAAAATTT
Found at i:24796965 original size:30 final size:30
Alignment explanation
Indices: 24796930--24796999 Score: 140
Period size: 30 Copynumber: 2.3 Consensus size: 30
24796920 AAATAATTAA
24796930 GAAAATGGGTCAAAAATAATAATCATTTAC
1 GAAAATGGGTCAAAAATAATAATCATTTAC
24796960 GAAAATGGGTCAAAAATAATAATCATTTAC
1 GAAAATGGGTCAAAAATAATAATCATTTAC
24796990 GAAAATGGGT
1 GAAAATGGGT
24797000 TGTTTTGAAC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.49, C:0.09, G:0.17, T:0.26
Consensus pattern (30 bp):
GAAAATGGGTCAAAAATAATAATCATTTAC
Found at i:24799575 original size:22 final size:22
Alignment explanation
Indices: 24799549--24799592 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
24799539 AGAATGCCTG
*
24799549 ATATTGATGTAGTCCTGAACAT
1 ATATTGATGCAGTCCTGAACAT
24799571 ATATTGATGCAGTCCTGAACAT
1 ATATTGATGCAGTCCTGAACAT
24799593 TGTACAGGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (22 bp):
ATATTGATGCAGTCCTGAACAT
Found at i:24804507 original size:20 final size:20
Alignment explanation
Indices: 24804482--24804543 Score: 106
Period size: 20 Copynumber: 3.1 Consensus size: 20
24804472 CATAGTAAAC
*
24804482 CAAAATAACCATAACCTATA
1 CAAAATAACCATAGCCTATA
*
24804502 CAAAATAACCATGGCCTATA
1 CAAAATAACCATAGCCTATA
24804522 CAAAATAACCATAGCCTATA
1 CAAAATAACCATAGCCTATA
24804542 CA
1 CA
24804544 TGCCATATAA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.50, C:0.26, G:0.05, T:0.19
Consensus pattern (20 bp):
CAAAATAACCATAGCCTATA
Found at i:24805394 original size:43 final size:43
Alignment explanation
Indices: 24805251--24805460 Score: 196
Period size: 43 Copynumber: 4.9 Consensus size: 43
24805241 AGTCTTGTAT
* * * * *
24805251 ATCACAT-ACAATGCC-ATATCCCGGATATGGTCTTACATGTT
1 ATCACATAACGATGCCAATATCCCAGACATGGTCTTACACGTA
* * **
24805292 ATCACATATCGATGCCAATAGCCCA-ACAATTTTCTTACACG-A
1 ATCACATAACGATGCCAATATCCCAGAC-ATGGTCTTACACGTA
* ** * * *
24805334 ATCATATATTGATGCCAATATCCCAAATATGGTCTTACACGAA
1 ATCACATAACGATGCCAATATCCCAGACATGGTCTTACACGTA
* *
24805377 ATCACATAACGATGCCAATGTCCCAGACATGGTCTGACACGTA
1 ATCACATAACGATGCCAATATCCCAGACATGGTCTTACACGTA
*
24805420 ATCACATATATCGATGCC-ATATCCCAGACATGGTTTTACAC
1 ATCACATA-A-CGATGCCAATATCCCAGACATGGTCTTACAC
24805461 AAAGTCTCAT
Statistics
Matches: 136, Mismatches: 26, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
41 7 0.05
42 40 0.29
43 61 0.45
44 21 0.15
45 7 0.05
ACGTcount: A:0.33, C:0.26, G:0.13, T:0.28
Consensus pattern (43 bp):
ATCACATAACGATGCCAATATCCCAGACATGGTCTTACACGTA
Found at i:24805417 original size:85 final size:86
Alignment explanation
Indices: 24805261--24805499 Score: 229
Period size: 85 Copynumber: 2.8 Consensus size: 86
24805251 ATCACATACA
* * ** * **
24805261 ATGCCATATCCCGGATATGGTCTTACATGTTATCACATATCGATGCCAATAGCCCAACAATTTTC
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCACATAACGATGCCAATAGCCCAACAATGGTC
* *
24805326 TTACACG-AAT-CATATATTG
66 TGACACGTAATACATATATCG
*
24805345 ATGCCAATATCCCAAATATGGTCTTACACGAAATCACATAACGATGCCAAT-GTCCCAGAC-ATG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAATCACATAACGATGCCAATAG-CCCA-ACAATG
24805408 GTCTGACACGTAATCACATATATCG
63 GTCTGACACGTAAT-ACATATATCG
* * * * * *
24805433 ATGCCATATCCCAGACATGGTTTTACAC-AAAGTCTCATTTATCGAAGCC-ATAGCCCAACTATG
1 ATGCCATATCCCAGATATGGTCTTACACGAAA-TCACA--TAACGATGCCAATAGCCCAACAATG
24805496 GTCT
63 GTCT
24805500 TATACAAAAT
Statistics
Matches: 128, Mismatches: 16, Indels: 18
0.79 0.10 0.11
Matches are distributed among these distances:
84 6 0.05
85 53 0.41
86 8 0.06
87 26 0.20
88 26 0.20
89 9 0.07
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.28
Consensus pattern (86 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCACATAACGATGCCAATAGCCCAACAATGGTC
TGACACGTAATACATATATCG
Found at i:24805476 original size:44 final size:45
Alignment explanation
Indices: 24805261--24805511 Score: 195
Period size: 43 Copynumber: 5.8 Consensus size: 45
24805251 ATCACATACA
* * * **
24805261 ATGCC-ATATCCCGGATATGGTCTTACATGTTATCAC--ATATCG
1 ATGCCAATATCCCAGACATGGTCTTACACGAAATCACATATATCG
* ** *
24805303 ATGCCAATAGCCCA-ACAATTTTCTTACACG-AAT--CATATATTG
1 ATGCCAATATCCCAGAC-ATGGTCTTACACGAAATCACATATATCG
* *
24805345 ATGCCAATATCCCAAATATGGTCTTACACGAAATCACATA-A-CG
1 ATGCCAATATCCCAGACATGGTCTTACACGAAATCACATATATCG
* * *
24805388 ATGCCAATGTCCCAGACATGGTCTGACACGTAATCACATATATCG
1 ATGCCAATATCCCAGACATGGTCTTACACGAAATCACATATATCG
* * *
24805433 ATGCC-ATATCCCAGACATGGTTTTACAC-AAAGTCTCATTTATCG
1 ATGCCAATATCCCAGACATGGTCTTACACGAAA-TCACATATATCG
* * * *
24805477 AAGCC-ATAGCCCA-ACTATGGTCTTATACAAAATCA
1 ATGCCAATATCCCAGAC-ATGGTCTTACACGAAATCA
24805512 TGTAAAGCCA
Statistics
Matches: 167, Mismatches: 29, Indels: 24
0.76 0.13 0.11
Matches are distributed among these distances:
40 1 0.01
42 37 0.22
43 60 0.36
44 55 0.33
45 14 0.08
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.28
Consensus pattern (45 bp):
ATGCCAATATCCCAGACATGGTCTTACACGAAATCACATATATCG
Found at i:24808901 original size:15 final size:16
Alignment explanation
Indices: 24808881--24808910 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
24808871 ATGTGTTTTC
24808881 ATCCAACAG-TAAAAA
1 ATCCAACAGTTAAAAA
24808896 ATCCAACAGTTAAAA
1 ATCCAACAGTTAAAA
24808911 TTTTTCAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.57, C:0.20, G:0.07, T:0.17
Consensus pattern (16 bp):
ATCCAACAGTTAAAAA
Found at i:24810382 original size:6 final size:6
Alignment explanation
Indices: 24810371--24810416 Score: 56
Period size: 6 Copynumber: 7.7 Consensus size: 6
24810361 ACGAAGGAAT
* * * *
24810371 AAGATG AAGATG AAGGTG AAGGTG AAGGTG AAGATG AAGGTG AAGA
1 AAGATG AAGATG AAGATG AAGATG AAGATG AAGATG AAGATG AAGA
24810417 AGATGGGGAG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 36 1.00
ACGTcount: A:0.43, C:0.00, G:0.41, T:0.15
Consensus pattern (6 bp):
AAGATG
Found at i:24810396 original size:12 final size:12
Alignment explanation
Indices: 24810375--24810416 Score: 75
Period size: 12 Copynumber: 3.5 Consensus size: 12
24810365 AGGAATAAGA
24810375 TGAAGATGAAGG
1 TGAAGATGAAGG
*
24810387 TGAAGGTGAAGG
1 TGAAGATGAAGG
24810399 TGAAGATGAAGG
1 TGAAGATGAAGG
24810411 TGAAGA
1 TGAAGA
24810417 AGATGGGGAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.40, C:0.00, G:0.43, T:0.17
Consensus pattern (12 bp):
TGAAGATGAAGG
Done.