Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62811768
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 736185 characters in sequence are not A, C, G, or T
File 94 of 211
Found at i:25953489 original size:411 final size:404
Alignment explanation
Indices: 25952673--25953963 Score: 1845
Period size: 411 Copynumber: 3.2 Consensus size: 404
25952663 AAGCCTTTTG
* * *
25952673 TTATTAAGTTAGTTTTCAAACCCTGTAAAAGTAATACATTTTC-AGGTCAAGGAAAAATTTAATT
1 TTATTAAGTTAGTTTTCAATCCCTGTACAAGTAATACATTTTCAAGGTCAA-GAAAACTTTAATT
* * * * *
25952737 GTGTTATTACTTGTGGCAAAATTAGATGAGACAACACGTGTTGTTTACCCAAAACACAATCTCCA
65 GTGTCACTACTTGTGGCAAAATTAGATG-GTC-ACATGTGTTGTTTCCCCAAAACACAATCTCCA
* * * * *
25952802 CAAGGTCTGATCACAACACATTCAAGTTTTGAAAATCTTCTAATTGCATCATATTGATCAAGTCT
128 CAAGGTTTGGTCACAACACTTTCGAGTTTTGAAAGTCTTCTAATTGCATCATATTGATCAAGTCT
* * * *
25952867 TTGTAAGTTTCGATAGTTCACATCACCAATCTTTTGATGTAACACCTCCAGATCTTGCATAGTAG
193 TTGTAAGTTTTGATAATTCACATCACCAATCTTTTGATGTCACACCTCTAGATCTTGCATAGTAG
* * **
25952932 CTTTATTGCAAATAACTTCATTAAAAACTTTGTAACAAGTTTCAAATTTTTTTGCTCCTCTTATT
258 CTTTATTGCAAATAACTTCATTAAAAACTTTGTAGCAATTTTCAAAAATTTTTGCTCCTCTTATT
*
25952997 ATAAGAATTTTTTTCATTAATTACATCACAACTATTTTTGTTAAATCTCATATTAAGCCTTTGGT
323 ATAA-AATTTTTTTCATTAATTACATCACAACTATTTTTGTTAAATATCATATTAAGCCTTTGGT
25953062 CACATAGTTGACTTATGC
387 CACATAGTTGACTTATGC
* * *
25953080 TTATTAAGTTAGTTTTCAATCCCTGTACAAGTAGTACATTATCAAGGTTAAGAAAATCTTTAATT
1 TTATTAAGTTAGTTTTCAATCCCTGTACAAGTAATACATTTTCAAGGTCAAGAAAA-CTTTAATT
*
25953145 GTGTCACTACTTATGGCAAAATTAGATAGGTCACTATGTGTTGTTTCCCCAAAACACAATCTCCA
65 GTGTCACTACTTGTGGCAAAATTAGAT-GGTCAC-ATGTGTTGTTTCCCCAAAACACAATCTCCA
* * * *
25953210 CAAGGTTTGGTCACAACACTTTTGAGTTTTGAAAGTATTCTAATTACATCATATTGATAAAGTCT
128 CAAGGTTTGGTCACAACACTTTCGAGTTTTGAAAGTCTTCTAATTGCATCATATTGATCAAGTCT
*
25953275 TTGTAAGTTTTGATAATTCACATCACCAATCTTTTGATATTGTCACACCTTTAGATCTTGCATAG
193 TTGTAAGTTTTGATAATTCACATCACCAATCTTTTG--A-TGTCACACCTCTAGATCTTGCATAG
* *
25953340 TAGCTTTATTGCAAATAACTTCATTAAAAACTTTGTAGCAATTTTCAAAAAATTTTGCTCCTCCT
255 TAGCTTTATTGCAAATAACTTCATTAAAAACTTTGTAGCAATTTTCAAAAATTTTTGCTCCTCTT
* *
25953405 ATTATAACAATTCTTTTCATTAATTACATCCCAACTATTTTTGTTAAATATCATATTAAGCCTTT
320 ATTATAA-AATTTTTTTCATTAATTACATCACAACTATTTTTGTTAAATATCATATTAAGCCTTT
*
25953470 GGTCATATAGTTGACTTATGC
384 GGTCACATAGTTGACTTATGC
* * * * *
25953491 TTATTAACTTAGCTTTCAATCCAC-ATACAAGTAATATATTTTAAAGGTCAAGAAAACTTTTAAT
1 TTATTAAGTTAGTTTTCAATCC-CTGTACAAGTAATACATTTTCAAGGTCAAGAAAAC-TTTAAT
* *
25953555 TGTGTCACTACTTGTGGCAAAATTAGATGGGTCACCATGTGTTGTCTCCCCAAAACATAATCTCC
64 TGTGTCACTACTTGTGGCAAAATTAGAT-GGTCA-CATGTGTTGTTTCCCCAAAACACAATCTCC
* *
25953620 ACAACGTTTGGTCACAACACTTTCGAGTTTTGAAAGTCTTCTAATTGCATCATATTGATCAATTC
127 ACAAGGTTTGGTCACAACACTTTCGAGTTTTGAAAGTCTTCTAATTGCATCATATTGATCAAGTC
* *
25953685 TTTGTAAGTTTTGATAATTCACACCACCAATCTTTTGATGTCACACATCTAGATCTTGCATAGTA
192 TTTGTAAGTTTTGATAATTCACATCACCAATCTTTTGATGTCACACCTCTAGATCTTGCATAGTA
* * * * *
25953750 GCTTTATTGAAAATAACTTCATTCAAAACTTTGTAGCAATTATCAAAAGTTTTTGCTCTTCTTAT
257 GCTTTATTGCAAATAACTTCATTAAAAACTTTGTAGCAATTTTCAAAAATTTTTGCTCCTCTTAT
* * *
25953815 TCTAAATTTTTTTTTTCATTAATTACATCACAACTATTTTTGTTAAATCA-CATATTAAGTCTTT
322 TATAAA--ATTTTTTTCATTAATTACATCACAACTATTTTTGTTAAAT-ATCATATTAAGCCTTT
25953879 GGTCACAT-GCTTGACTTATGC
384 GGTCACATAG-TTGACTTATGC
**
25953900 TTATTACA-TTAGTTTTCAATCATTGTACAAGTAATACATTTTCAAGGTCAAGAAAACCTTTAAT
1 TTATTA-AGTTAGTTTTCAATCCCTGTACAAGTAATACATTTTCAAGGTCAAGAAAA-CTTTAAT
25953964 AAAGTATACA
Statistics
Matches: 790, Mismatches: 77, Indels: 32
0.88 0.09 0.04
Matches are distributed among these distances:
407 47 0.06
408 245 0.31
409 123 0.16
410 5 0.01
411 368 0.47
412 2 0.00
ACGTcount: A:0.32, C:0.17, G:0.12, T:0.39
Consensus pattern (404 bp):
TTATTAAGTTAGTTTTCAATCCCTGTACAAGTAATACATTTTCAAGGTCAAGAAAACTTTAATTG
TGTCACTACTTGTGGCAAAATTAGATGGTCACATGTGTTGTTTCCCCAAAACACAATCTCCACAA
GGTTTGGTCACAACACTTTCGAGTTTTGAAAGTCTTCTAATTGCATCATATTGATCAAGTCTTTG
TAAGTTTTGATAATTCACATCACCAATCTTTTGATGTCACACCTCTAGATCTTGCATAGTAGCTT
TATTGCAAATAACTTCATTAAAAACTTTGTAGCAATTTTCAAAAATTTTTGCTCCTCTTATTATA
AAATTTTTTTCATTAATTACATCACAACTATTTTTGTTAAATATCATATTAAGCCTTTGGTCACA
TAGTTGACTTATGC
Found at i:25957699 original size:20 final size:20
Alignment explanation
Indices: 25957670--25957712 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
25957660 AAAATAAAAA
* **
25957670 TATAATTATTCATTTAATAT
1 TATAACTATTCAAATAATAT
25957690 TATAACTATTCAAATAATAT
1 TATAACTATTCAAATAATAT
25957710 TAT
1 TAT
25957713 TTAAATAGTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.49
Consensus pattern (20 bp):
TATAACTATTCAAATAATAT
Found at i:25957707 original size:32 final size:32
Alignment explanation
Indices: 25957671--25957731 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
25957661 AAATAAAAAT
25957671 ATAATTATTCATTT-AATA-TTATAACTATTCAA
1 ATAA-TATT-ATTTAAATAGTTATAACTATTCAA
*
25957703 ATAATATTATTTAAATAGTTATAATTATT
1 ATAATATTATTTAAATAGTTATAACTATT
25957732 TTTCAAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
30 4 0.15
31 8 0.31
32 14 0.54
ACGTcount: A:0.44, C:0.05, G:0.02, T:0.49
Consensus pattern (32 bp):
ATAATATTATTTAAATAGTTATAACTATTCAA
Found at i:25967774 original size:5 final size:5
Alignment explanation
Indices: 25967764--25967789 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
25967754 TTTATTCATC
25967764 AGAAA AGAAA AGAAA AGAAA AGAAA A
1 AGAAA AGAAA AGAAA AGAAA AGAAA A
25967790 TGAATAATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (5 bp):
AGAAA
Found at i:25971059 original size:6 final size:6
Alignment explanation
Indices: 25971048--25971072 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
25971038 TGAAGTTCTT
25971048 GGGTTA GGGTTA GGGTTA GGGTTA G
1 GGGTTA GGGTTA GGGTTA GGGTTA G
25971073 TTTGAGGATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.52, T:0.32
Consensus pattern (6 bp):
GGGTTA
Found at i:25972498 original size:31 final size:32
Alignment explanation
Indices: 25972453--25972513 Score: 88
Period size: 31 Copynumber: 1.9 Consensus size: 32
25972443 TGAATTATTC
*
25972453 AAAAATTTTCATTTAAGTCAATAAACTATTTA
1 AAAAAATTTCATTTAAGTCAATAAACTATTTA
* *
25972485 AAAAAATTT-ATTTAAGTCACTAGACTATT
1 AAAAAATTTCATTTAAGTCAATAAACTATT
25972514 ATTATTTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 18 0.69
32 8 0.31
ACGTcount: A:0.46, C:0.10, G:0.05, T:0.39
Consensus pattern (32 bp):
AAAAAATTTCATTTAAGTCAATAAACTATTTA
Found at i:25983266 original size:12 final size:12
Alignment explanation
Indices: 25983217--25983259 Score: 68
Period size: 12 Copynumber: 3.6 Consensus size: 12
25983207 TCATTTTATC
*
25983217 ATCAAGTCTTGA
1 ATCAAGTCATGA
25983229 ATCAAGTCATGA
1 ATCAAGTCATGA
*
25983241 ATCAAGTCATTA
1 ATCAAGTCATGA
25983253 ATCAAGT
1 ATCAAGT
25983260 TTTTAATTAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 29 1.00
ACGTcount: A:0.40, C:0.16, G:0.14, T:0.30
Consensus pattern (12 bp):
ATCAAGTCATGA
Found at i:25984521 original size:15 final size:15
Alignment explanation
Indices: 25984503--25984537 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
25984493 TTTAGTTTTA
*
25984503 ATTTTTTTTCTTATT
1 ATTTTTTTTATTATT
*
25984518 ATTTTTTTTATTTTT
1 ATTTTTTTTATTATT
25984533 ATTTT
1 ATTTT
25984538 GTAGGGAGAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.14, C:0.03, G:0.00, T:0.83
Consensus pattern (15 bp):
ATTTTTTTTATTATT
Found at i:25985958 original size:12 final size:12
Alignment explanation
Indices: 25985909--25985951 Score: 68
Period size: 12 Copynumber: 3.6 Consensus size: 12
25985899 TCATTTTATC
*
25985909 ATCAAGTCTTGA
1 ATCAAGTCATGA
25985921 ATCAAGTCATGA
1 ATCAAGTCATGA
*
25985933 ATCAAGTCATTA
1 ATCAAGTCATGA
25985945 ATCAAGT
1 ATCAAGT
25985952 TTTTAATTAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 29 1.00
ACGTcount: A:0.40, C:0.16, G:0.14, T:0.30
Consensus pattern (12 bp):
ATCAAGTCATGA
Found at i:25988172 original size:20 final size:20
Alignment explanation
Indices: 25988149--25988231 Score: 57
Period size: 20 Copynumber: 4.3 Consensus size: 20
25988139 TAATAAGATC
25988149 TAATAAAATAATAAATAATT
1 TAATAAAATAATAAATAATT
* * **
25988169 TAATCATATTTTAATATAA-T
1 TAATAAAATAATAA-ATAATT
* **
25988189 T-ATTATTTAAT--ATAATT
1 TAATAAAATAATAAATAATT
*
25988206 TAATAAAATAATATATAATT
1 TAATAAAATAATAAATAATT
25988226 TAATAA
1 TAATAA
25988232 TATTTTTAAT
Statistics
Matches: 47, Mismatches: 11, Indels: 10
0.69 0.16 0.15
Matches are distributed among these distances:
16 4 0.09
17 2 0.04
18 7 0.15
19 6 0.13
20 24 0.51
21 4 0.09
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (20 bp):
TAATAAAATAATAAATAATT
Found at i:25988208 original size:10 final size:10
Alignment explanation
Indices: 25988163--25988247 Score: 63
Period size: 11 Copynumber: 8.6 Consensus size: 10
25988153 AAAATAATAA
25988163 ATAATTTAAT
1 ATAATTTAAT
*
25988173 CATATTTTAAT
1 -ATAATTTAAT
25988184 ATAA-TT-AT
1 ATAATTTAAT
25988192 -T-ATTTAAT
1 ATAATTTAAT
25988200 ATAATTTAAT
1 ATAATTTAAT
* *
25988210 A-AAATAATAT
1 ATAATTTA-AT
25988220 ATAATTTAAT
1 ATAATTTAAT
*
25988230 AATATTTTTAAT
1 -ATA-ATTTAAT
25988242 ATAATT
1 ATAATT
25988248 ATTTTTATAT
Statistics
Matches: 58, Mismatches: 8, Indels: 17
0.70 0.10 0.20
Matches are distributed among these distances:
6 1 0.02
7 3 0.05
8 4 0.07
9 7 0.12
10 18 0.31
11 19 0.33
12 6 0.10
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (10 bp):
ATAATTTAAT
Found at i:25988224 original size:57 final size:58
Alignment explanation
Indices: 25988136--25988254 Score: 181
Period size: 57 Copynumber: 2.1 Consensus size: 58
25988126 TGTTATTAAA
*
25988136 ATTTAATAAGATCTAATAAAATAATAAATAATTTAATCATA-TTTTAATATAATTATT
1 ATTTAATAAGATCTAATAAAATAATAAATAATTTAATAATATTTTTAATATAATTATT
* *
25988193 ATTTAATATA-ATTTAATAAAATAATATATAATTTAATAATATTTTTAATATAATTATT
1 ATTTAATA-AGATCTAATAAAATAATAAATAATTTAATAATATTTTTAATATAATTATT
25988251 -TTTA
1 ATTTA
25988255 TATTAAATTA
Statistics
Matches: 57, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
57 40 0.70
58 17 0.30
ACGTcount: A:0.50, C:0.02, G:0.01, T:0.48
Consensus pattern (58 bp):
ATTTAATAAGATCTAATAAAATAATAAATAATTTAATAATATTTTTAATATAATTATT
Found at i:25988265 original size:16 final size:15
Alignment explanation
Indices: 25988177--25988254 Score: 58
Period size: 15 Copynumber: 5.3 Consensus size: 15
25988167 TTTAATCATA
25988177 TTTTAATATAATTAT
1 TTTTAATATAATTAT
25988192 TATTTAATATAA-T-T
1 T-TTTAATATAATTAT
** *
25988206 TAATAAAATAATATAT
1 TTTTAATATAAT-TAT
*
25988222 AATTT-A-ATAA-TAT
1 -TTTTAATATAATTAT
25988235 TTTTAATATAATTAT
1 TTTTAATATAATTAT
25988250 TTTTA
1 TTTTA
25988255 TATTAAATTA
Statistics
Matches: 48, Mismatches: 7, Indels: 16
0.68 0.10 0.23
Matches are distributed among these distances:
12 3 0.06
13 11 0.23
14 6 0.12
15 15 0.31
16 12 0.25
17 1 0.02
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
TTTTAATATAATTAT
Found at i:25988267 original size:10 final size:10
Alignment explanation
Indices: 25988252--25988331 Score: 57
Period size: 10 Copynumber: 8.6 Consensus size: 10
25988242 ATAATTATTT
25988252 TTATATTAAA
1 TTATATTAAA
25988262 TTATATTAAA
1 TTATATTAAA
25988272 --ATATT---
1 TTATATTAAA
*
25988277 TTATTTTAAA
1 TTATATTAAA
25988287 TTATATT-AA
1 TTATATTAAA
* **
25988296 TT-TTTTAGTT
1 TTATATTA-AA
25988306 TTATATTAAA
1 TTATATTAAA
25988316 TTATATTAAA
1 TTATATTAAA
*
25988326 ATATAT
1 TTATAT
25988332 CTTTATATTT
Statistics
Matches: 53, Mismatches: 9, Indels: 16
0.68 0.12 0.21
Matches are distributed among these distances:
7 4 0.08
8 8 0.15
9 4 0.08
10 33 0.62
11 4 0.08
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.56
Consensus pattern (10 bp):
TTATATTAAA
Found at i:25991383 original size:22 final size:22
Alignment explanation
Indices: 25991358--25991402 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
25991348 AGCGTTTTGG
*
25991358 ACAAGAATCAGGTTTATATACA
1 ACAAGAATCACGTTTATATACA
25991380 ACAAGAATCACGTTTATATACA
1 ACAAGAATCACGTTTATATACA
25991402 A
1 A
25991403 TATTAAGAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.47, C:0.16, G:0.11, T:0.27
Consensus pattern (22 bp):
ACAAGAATCACGTTTATATACA
Found at i:25994246 original size:124 final size:126
Alignment explanation
Indices: 25993951--25994287 Score: 421
Period size: 124 Copynumber: 2.7 Consensus size: 126
25993941 ATTTCTAATA
*
25993951 AAATAATATAAAATCGCTTCTAGCAGGATGATATTTGAGAAGAATTTATGAAATCGCGCCCTCGT
1 AAATAATATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTATGAAATCGCGCCCTCGT
* *
25994016 GGACGCACTTTTGCTACAGTAGGTCACAGAAGAAATAATTATTTTTTTGACGTTTTTGAGC
66 AGACGCACTTTTGCTACAGTAGGTCACAGAAGAAATAATTATTTTTTTGACGTTTCTGAGC
* * *
25994077 AAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTATGAAATTGCGGCCTCGT
1 AAATAATATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTATGAAATCGCGCCCTCGT
* **** ***
25994142 CAG-CGCGCTTTTGCTACAGTAGGTCTTTTAATCTATAA-T-TTTTTTTGACGTTTCTGAGC
66 -AGACGCACTTTTGCTACAGTAGGTCACAGAAGAAATAATTATTTTTTTGACGTTTCTGAGC
* * * * * * **
25994201 AAATAACATAAAATCGCTTATACCAGGATGCTATTTGGGAAGAATTTGTGAAATCACGCCCTAAT
1 AAATAATATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTATGAAATCGCGCCCTCGT
*
25994266 GGACGCGA-TTTTGCTACAGTAG
66 AGACGC-ACTTTTGCTACAGTAG
25994288 CATGTTTGGG
Statistics
Matches: 181, Mismatches: 27, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
123 1 0.01
124 90 0.50
125 1 0.01
126 88 0.49
127 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (126 bp):
AAATAATATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTATGAAATCGCGCCCTCGT
AGACGCACTTTTGCTACAGTAGGTCACAGAAGAAATAATTATTTTTTTGACGTTTCTGAGC
Found at i:25997524 original size:116 final size:116
Alignment explanation
Indices: 25997317--25997534 Score: 382
Period size: 116 Copynumber: 1.9 Consensus size: 116
25997307 TGATAAATTG
* * * *
25997317 TATTAAGTCAAAAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATACAGTTATTATTTGT
1 TATTAAGTCAAAAAATTGTATTAATGATTAGTAAAATTATCAAATTATATAAAATTATTATTTGC
*
25997382 TAGTACCAGTCAAAACATTTTTCCAAATCTAACATTATGTGAATGTAAAAT
66 TAGTACCAGTCAAAACATTTTCCCAAATCTAACATTATGTGAATGTAAAAT
*
25997433 TATTAAGTCAAAAAATTGTATTAATGATTAGTAAAATTATCAAATTATGTAAAATTATTATTTGC
1 TATTAAGTCAAAAAATTGTATTAATGATTAGTAAAATTATCAAATTATATAAAATTATTATTTGC
25997498 TAGTACCAGTCAAAACATTTTCCCAAATCTAACATTA
66 TAGTACCAGTCAAAACATTTTCCCAAATCTAACATTA
25997535 CGTTAAGGTT
Statistics
Matches: 96, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
116 96 1.00
ACGTcount: A:0.42, C:0.11, G:0.09, T:0.38
Consensus pattern (116 bp):
TATTAAGTCAAAAAATTGTATTAATGATTAGTAAAATTATCAAATTATATAAAATTATTATTTGC
TAGTACCAGTCAAAACATTTTCCCAAATCTAACATTATGTGAATGTAAAAT
Found at i:25997590 original size:28 final size:29
Alignment explanation
Indices: 25997531--25997597 Score: 109
Period size: 29 Copynumber: 2.3 Consensus size: 29
25997521 CAAATCTAAC
* *
25997531 ATTACGTTAAGGTTAGGGTTTTTAATTAA
1 ATTAGGTTAGGGTTAGGGTTTTTAATTAA
25997560 ATTAGGTTAGGGTTAGGGTTTTT-ATTAA
1 ATTAGGTTAGGGTTAGGGTTTTTAATTAA
25997588 ATTAGGTTAG
1 ATTAGGTTAG
25997598 AGTTTTTATT
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
28 15 0.42
29 21 0.58
ACGTcount: A:0.28, C:0.01, G:0.25, T:0.45
Consensus pattern (29 bp):
ATTAGGTTAGGGTTAGGGTTTTTAATTAA
Found at i:25997648 original size:29 final size:29
Alignment explanation
Indices: 25997615--25997677 Score: 92
Period size: 29 Copynumber: 2.2 Consensus size: 29
25997605 ATTTAAGGGT
25997615 TTAGGGCTTTTAATTAAATTA-AGTTAGAG
1 TTAGGGCTTTTAATTAAATTAGA-TTAGAG
* *
25997644 TTAGGGTTTTTAATTAAATTAGATTAGGG
1 TTAGGGCTTTTAATTAAATTAGATTAGAG
25997673 TTAGG
1 TTAGG
25997678 ATTTTTATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
29 30 0.97
30 1 0.03
ACGTcount: A:0.32, C:0.02, G:0.24, T:0.43
Consensus pattern (29 bp):
TTAGGGCTTTTAATTAAATTAGATTAGAG
Found at i:25997682 original size:29 final size:29
Alignment explanation
Indices: 25997622--25997689 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
25997612 GGTTTAGGGC
*
25997622 TTTTAATTAAATTAAGTTAGAGTTAGGGT
1 TTTTAATTAAATTAAGTTAGAGTTAGGAT
*
25997651 TTTTAATTAAATT-AGATTAGGGTTAGGAT
1 TTTTAATTAAATTAAG-TTAGAGTTAGGAT
*
25997680 TTTTATTTAA
1 TTTTAATTAA
25997690 GGGTTTAGGG
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
28 2 0.06
29 33 0.94
ACGTcount: A:0.34, C:0.00, G:0.18, T:0.49
Consensus pattern (29 bp):
TTTTAATTAAATTAAGTTAGAGTTAGGAT
Found at i:25997687 original size:79 final size:72
Alignment explanation
Indices: 25997543--25997720 Score: 257
Period size: 79 Copynumber: 2.4 Consensus size: 72
25997533 TACGTTAAGG
* * *
25997543 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTATTAAATTAGGTTAGAGTTTTTATT
1 TTAGGGCTTTTAATTAAATTAGGTTAGAGTTAGGGTTTTTATTAAATTAGATTAGAGTTTTTATT
25997608 TAAGGGT
66 TAAGGGT
*
25997615 TTAGGGCTTTTAATTAAATTAAGTTAGAGTTAGGGTTTTTAATTAAATTAGATTAGGGTTAGGAT
1 TTAGGGCTTTTAATTAAATTAGGTTAGAGTTAGGGTTTTT-ATTAAATTAGATTA--G--A-G-T
25997680 TTTTATTTAAGGGT
59 TTTTATTTAAGGGT
25997694 TTAGGGCTTTTAATTAAATTAGGTTAG
1 TTAGGGCTTTTAATTAAATTAGGTTAG
25997721 GGTTTTTAAT
Statistics
Matches: 94, Mismatches: 5, Indels: 7
0.89 0.05 0.07
Matches are distributed among these distances:
72 37 0.39
73 13 0.14
75 1 0.01
77 1 0.01
78 1 0.01
79 41 0.44
ACGTcount: A:0.29, C:0.01, G:0.24, T:0.47
Consensus pattern (72 bp):
TTAGGGCTTTTAATTAAATTAGGTTAGAGTTAGGGTTTTTATTAAATTAGATTAGAGTTTTTATT
TAAGGGT
Found at i:25997698 original size:50 final size:50
Alignment explanation
Indices: 25997644--25998184 Score: 745
Period size: 50 Copynumber: 10.9 Consensus size: 50
25997634 TAAGTTAGAG
*
25997644 TTAGGGTTTTTAATTAAATTAGATTAGGGTTAGGATTTTTATTTAAGGGT
1 TTAGGGTTTTTAATTAAATTAGATTAGGGTTAGGGTTTTTATTTAAGGGT
* *
25997694 TTAGGGCTTTTAATT--A--A-ATTA-GGTTAGGGTTTTTAATTAAGGGT
1 TTAGGGTTTTTAATTAAATTAGATTAGGGTTAGGGTTTTTATTTAAGGGT
* *
25997738 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTCATTTAAGGGT
1 TTAGGGTTTTTAATTAAATTAGATTAGGGTTAGGGTTTTTATTTAAGGGT
* **
25997788 TTAGAGTTTTTAATTAAATTATG-TTAATGTTAGGGTTTTTATTTAAGGGT
1 TTAGGGTTTTTAATTAAATTA-GATTAGGGTTAGGGTTTTTATTTAAGGGT
* *
25997838 TTAGGGTTTTTAATTGAATTAGACTAGGGTTAGGGTTTTTATTTAAGGGT
1 TTAGGGTTTTTAATTAAATTAGATTAGGGTTAGGGTTTTTATTTAAGGGT
* * * *
25997888 TTAGGGCTTTTAATTAAATCAGGTTAGGGTTAGGGTTTTTAATTAAGGGT
1 TTAGGGTTTTTAATTAAATTAGATTAGGGTTAGGGTTTTTATTTAAGGGT
* *
25997938 TTAGGGTTTTTAATTGAATTAGGTTAGGGTTAGGGTTTTTATTTAAGGGT
1 TTAGGGTTTTTAATTAAATTAGATTAGGGTTAGGGTTTTTATTTAAGGGT
* * *
25997988 TTAGGGCTTTTAATTAAATTAGGTTAGGGTTAGGGTATTTATTTAAGGGT
1 TTAGGGTTTTTAATTAAATTAGATTAGGGTTAGGGTTTTTATTTAAGGGT
*
25998038 TTAGGGTTTTTAATTGAATTAGATTAGGGTTAGGGTTTTTATTTAAGGGT
1 TTAGGGTTTTTAATTAAATTAGATTAGGGTTAGGGTTTTTATTTAAGGGT
* ** **
25998088 TTAGGGCTTTTAATTAAATTAGATTAGGGTTAGGGTTATTGGTAGAAGGGT
1 TTAGGGTTTTTAATTAAATTAGATTAGGGTTAGGGTT-TTTATTTAAGGGT
* * * * *
25998139 TTAGGGTTTTTAAATGAATTAGGTTAGGATTAGGGTTTTTAATTAA
1 TTAGGGTTTTTAATTAAATTAGATTAGGGTTAGGGTTTTTATTTAA
25998185 ATTAGGTTAG
Statistics
Matches: 433, Mismatches: 49, Indels: 18
0.87 0.10 0.04
Matches are distributed among these distances:
44 35 0.08
45 4 0.01
46 2 0.00
48 2 0.00
49 4 0.01
50 344 0.79
51 42 0.10
ACGTcount: A:0.26, C:0.01, G:0.27, T:0.46
Consensus pattern (50 bp):
TTAGGGTTTTTAATTAAATTAGATTAGGGTTAGGGTTTTTATTTAAGGGT
Found at i:25997704 original size:21 final size:21
Alignment explanation
Indices: 25997669--25997754 Score: 95
Period size: 21 Copynumber: 4.0 Consensus size: 21
25997659 AAATTAGATT
* *
25997669 AGGG-TTAGGATTTTTATTTA
1 AGGGTTTAGGGTTTTTAATTA
*
25997689 AGGGTTTAGGGCTTTTAATTAA
1 AGGGTTTAGGGTTTTTAATT-A
*
25997711 ATTAGG-TTAGGGTTTTTAATTA
1 A--GGGTTTAGGGTTTTTAATTA
25997733 AGGGTTTAGGGTTTTTAATTA
1 AGGGTTTAGGGTTTTTAATTA
25997754 A
1 A
25997755 ATTAGGTTAG
Statistics
Matches: 55, Mismatches: 6, Indels: 9
0.79 0.09 0.13
Matches are distributed among these distances:
20 6 0.11
21 29 0.53
22 4 0.07
23 14 0.25
24 2 0.04
ACGTcount: A:0.27, C:0.01, G:0.26, T:0.47
Consensus pattern (21 bp):
AGGGTTTAGGGTTTTTAATTA
Found at i:25997828 original size:123 final size:124
Alignment explanation
Indices: 25997547--25997833 Score: 325
Period size: 123 Copynumber: 2.3 Consensus size: 124
25997537 TTAAGGTTAG
* * *
25997547 GGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTT-ATTAAATTAGGTTAGAGTTTTTATTTAA
1 GGTTTTTAATTAAATTATGTTAAGGTTAGGGTTTTTAATTAAATTAGGTTAGAGTTTTTAATTAA
*
25997611 GGGTTTAGGGCTTTTAATTAAATTAAGTTAGAGTTAGGGTTTTTAATTAAATTAGATTA
66 GGGTTTAGGGCTTTTAATTAAATTAAGTTAGAGTTAGGGTTTTTAATTAAATGAGATTA
* *** * * *
25997670 GGGTTAGGATT--TTTAT-TTAAGGGTTTAGGGCTTTTAATTAAATTAGGTTAGGGTTTTTAATT
1 GGTTTTTAATTAAATTATGTTAA-GG-TTAGGGTTTTTAATTAAATTAGGTTAGAGTTTTTAATT
* * * * * * *
25997732 AAGGGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGG-TTTTCATTTAA-GGGTTTA
64 AAGGGTTTAGGGCTTTTAATTAAATTAAGTTAGAGTTAGGGTTTTTAATTAAATGAGATTA
* *
25997791 GAGTTTTTAATTAAATTATGTTAATGTTAGGGTTTTTATTTAA
1 G-GTTTTTAATTAAATTATGTTAAGGTTAGGGTTTTTAATTAA
25997834 GGGTTTAGGG
Statistics
Matches: 131, Mismatches: 26, Indels: 14
0.77 0.15 0.08
Matches are distributed among these distances:
120 3 0.02
121 10 0.08
122 25 0.19
123 84 0.64
124 5 0.04
125 4 0.03
ACGTcount: A:0.28, C:0.01, G:0.23, T:0.48
Consensus pattern (124 bp):
GGTTTTTAATTAAATTATGTTAAGGTTAGGGTTTTTAATTAAATTAGGTTAGAGTTTTTAATTAA
GGGTTTAGGGCTTTTAATTAAATTAAGTTAGAGTTAGGGTTTTTAATTAAATGAGATTA
Found at i:25997893 original size:21 final size:21
Alignment explanation
Indices: 25997863--25998049 Score: 61
Period size: 21 Copynumber: 7.8 Consensus size: 21
25997853 GAATTAGACT
25997863 AGGG-TTAGGGTTTTTATTTA
1 AGGGTTTAGGGTTTTTATTTA
*
25997883 AGGGTTTAGGGCTTTTAATTAAATCA
1 AGGGTTTAGGG-TTTTTATT---T-A
* * *
25997909 GGTTAGGGTTAGGGTTTTTAATTA
1 AG---GGTTTAGGGTTTTTATTTA
*
25997933 AGGGTTTAGGGTTTTTAATTGA
1 AGGGTTTAGGGTTTTT-ATTTA
*
25997955 ATTAGGTTAGGGTTAGGGTTTTTATTTA
1 A--GGGTT-----TAGGGTTTTTATTTA
*
25997983 AGGGTTTAGGGCTTTTAATTAAATTA
1 AGGGTTTAGGG--TTT--TT-ATTTA
* * *
25998009 GGTTAGGGTTAGGGTATTTATTTA
1 AG---GGTTTAGGGTTTTTATTTA
25998033 AGGGTTTAGGGTTTTTA
1 AGGGTTTAGGGTTTTTA
25998050 ATTGAATTAG
Statistics
Matches: 122, Mismatches: 20, Indels: 49
0.64 0.10 0.26
Matches are distributed among these distances:
20 4 0.03
21 37 0.30
22 11 0.09
23 3 0.02
24 11 0.09
25 6 0.05
26 11 0.09
27 2 0.02
28 11 0.09
29 26 0.21
ACGTcount: A:0.24, C:0.02, G:0.29, T:0.45
Consensus pattern (21 bp):
AGGGTTTAGGGTTTTTATTTA
Found at i:25998093 original size:21 final size:20
Alignment explanation
Indices: 25998063--25998104 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
25998053 GAATTAGATT
* *
25998063 AGGGTTAGGGTTTTTATTTA
1 AGGGTTAGGGCTTTTAATTA
25998083 AGGGTTTAGGGCTTTTAATTA
1 AGGG-TTAGGGCTTTTAATTA
25998104 A
1 A
25998105 ATTAGATTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.24, C:0.02, G:0.29, T:0.45
Consensus pattern (20 bp):
AGGGTTAGGGCTTTTAATTA
Found at i:25998190 original size:29 final size:29
Alignment explanation
Indices: 25998139--25998195 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
25998129 GTAGAAGGGT
*
25998139 TTAGGGTTTTTAAATGAATTAGGTTAGGA
1 TTAGGGTTTTTAAATAAATTAGGTTAGGA
*
25998168 TTAGGGTTTTTAATTAAATTAGGTTAGG
1 TTAGGGTTTTTAAATAAATTAGGTTAGG
25998196 GCTTTTATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.30, C:0.00, G:0.26, T:0.44
Consensus pattern (29 bp):
TTAGGGTTTTTAAATAAATTAGGTTAGGA
Found at i:25998201 original size:23 final size:24
Alignment explanation
Indices: 25998162--25998250 Score: 89
Period size: 23 Copynumber: 3.9 Consensus size: 24
25998152 ATGAATTAGG
*
25998162 TTAGGATTAGGGTTTTTAATTAAA
1 TTAGGATTAGGGCTTTTAATTAAA
*
25998186 TTAGG-TTAGGGCTTTT-ATTTAA
1 TTAGGATTAGGGCTTTTAATTAAA
* *
25998208 --GGGTTTAGGGCTTTTAATTAAA
1 TTAGGATTAGGGCTTTTAATTAAA
* *
25998230 TTAGG-CTAGGGTTTTTAATTA
1 TTAGGATTAGGGCTTTTAATTA
25998251 TTATTACATC
Statistics
Matches: 54, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
20 2 0.04
21 11 0.20
22 10 0.19
23 24 0.44
24 7 0.13
ACGTcount: A:0.27, C:0.03, G:0.24, T:0.46
Consensus pattern (24 bp):
TTAGGATTAGGGCTTTTAATTAAA
Found at i:25998776 original size:18 final size:18
Alignment explanation
Indices: 25998742--25998776 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
25998732 CGGAAAAGGA
**
25998742 TACATATAAGGGTTAGGG
1 TACATATAAGGACTAGGG
25998760 TACATATAAGGACTAGG
1 TACATATAAGGACTAGG
25998777 AAACGCACCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.09, G:0.29, T:0.26
Consensus pattern (18 bp):
TACATATAAGGACTAGGG
Found at i:25999434 original size:7 final size:7
Alignment explanation
Indices: 25999424--25999448 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
25999414 TTATATACAT
25999424 AATACTA
1 AATACTA
25999431 AATACTA
1 AATACTA
25999438 AATACTA
1 AATACTA
25999445 AATA
1 AATA
25999449 TCAATCGAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:26000656 original size:51 final size:51
Alignment explanation
Indices: 26000596--26000706 Score: 172
Period size: 51 Copynumber: 2.2 Consensus size: 51
26000586 TTAAAAAATA
*
26000596 AAATTGAGAAGAAAATT-AAATTAAACAT-GAATTTGAGAGAATTTTTGAAGG
1 AAATTGAGAAG-AAATTGAAATTAAACATAG-ATTTGAGAGAATTTTGGAAGG
*
26000647 AAATTGAGAAGAAATTGAAATTAAATATAGATTTGAGAGAATTTTGGAAGG
1 AAATTGAGAAGAAATTGAAATTAAACATAGATTTGAGAGAATTTTGGAAGG
26000698 AAATTGAGA
1 AAATTGAGA
26000707 GAATTTTGGA
Statistics
Matches: 56, Mismatches: 2, Indels: 4
0.90 0.03 0.06
Matches are distributed among these distances:
50 5 0.09
51 50 0.89
52 1 0.02
ACGTcount: A:0.49, C:0.01, G:0.22, T:0.29
Consensus pattern (51 bp):
AAATTGAGAAGAAATTGAAATTAAACATAGATTTGAGAGAATTTTGGAAGG
Found at i:26000704 original size:22 final size:22
Alignment explanation
Indices: 26000679--26000729 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
26000669 AAATATAGAT
*
26000679 TTGAGAGAATTTTGGAAGGAAA
1 TTGAGAGAATTTTGGAAAGAAA
*
26000701 TTGAGAGAATTTTGGAAAGAAT
1 TTGAGAGAATTTTGGAAAGAAA
26000723 TTGAGAG
1 TTGAGAG
26000730 GGATTGAGAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.39, C:0.00, G:0.31, T:0.29
Consensus pattern (22 bp):
TTGAGAGAATTTTGGAAAGAAA
Found at i:26001404 original size:31 final size:30
Alignment explanation
Indices: 26001369--26001436 Score: 77
Period size: 31 Copynumber: 2.3 Consensus size: 30
26001359 AACCATTTGG
* *
26001369 AAAGATTTGA-CATTCATTTGAGCATTTTATA
1 AAAGATTTGACCATT-ATATGACCATTTTA-A
*
26001400 AAAGATTAGACCATTATATGACCATTTTAA
1 AAAGATTTGACCATTATATGACCATTTTAA
26001430 AAA-ATTT
1 AAAGATTT
26001437 AACTTTACAT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
29 3 0.09
30 4 0.12
31 21 0.66
32 4 0.12
ACGTcount: A:0.41, C:0.10, G:0.10, T:0.38
Consensus pattern (30 bp):
AAAGATTTGACCATTATATGACCATTTTAA
Found at i:26010859 original size:18 final size:18
Alignment explanation
Indices: 26010833--26010868 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
26010823 ACCGAAGAAA
*
26010833 CATCATCCTTATTGTCCT
1 CATCATCCTTATCGTCCT
*
26010851 CATCGTCCTTATCGTCCT
1 CATCATCCTTATCGTCCT
26010869 TTTTGCAACC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.14, C:0.36, G:0.08, T:0.42
Consensus pattern (18 bp):
CATCATCCTTATCGTCCT
Found at i:26013032 original size:19 final size:19
Alignment explanation
Indices: 26013004--26013043 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
26012994 ATATATTATA
*
26013004 TATATTCATGTATTAAAAT
1 TATATACATGTATTAAAAT
26013023 TATATACATGTATTAAAAT
1 TATATACATGTATTAAAAT
26013042 TA
1 TA
26013044 AATAATCTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.45, C:0.05, G:0.05, T:0.45
Consensus pattern (19 bp):
TATATACATGTATTAAAAT
Found at i:26013065 original size:39 final size:39
Alignment explanation
Indices: 26013022--26013138 Score: 138
Period size: 39 Copynumber: 3.1 Consensus size: 39
26013012 TGTATTAAAA
26013022 TTATATACATGTATTAAAATTAAATAATCTTATATATAT
1 TTATATACATGTATTAAAATTAAATAATCTTATATATAT
*
26013061 TTATATACA--TA-TAAATCTTATATATATAT-TTATATATAT
1 TTATATACATGTATTAAA-ATTA-A-ATA-ATCTTATATATAT
*
26013100 TTATATACATGTATTAAAATTAAATAA-C-TAAATATAT
1 TTATATACATGTATTAAAATTAAATAATCTTATATATAT
26013137 TT
1 TT
26013139 GAGGATTCAT
Statistics
Matches: 67, Mismatches: 3, Indels: 18
0.76 0.03 0.20
Matches are distributed among these distances:
36 4 0.06
37 15 0.22
38 2 0.03
39 34 0.51
40 3 0.04
41 5 0.07
42 4 0.06
ACGTcount: A:0.46, C:0.05, G:0.02, T:0.47
Consensus pattern (39 bp):
TTATATACATGTATTAAAATTAAATAATCTTATATATAT
Found at i:26013066 original size:10 final size:10
Alignment explanation
Indices: 26013051--26013106 Score: 62
Period size: 10 Copynumber: 5.7 Consensus size: 10
26013041 TTAAATAATC
26013051 TTATATATAT
1 TTATATATAT
*
26013061 TTATATACA-
1 TTATATATAT
* *
26013070 -TATAAATCT
1 TTATATATAT
26013079 TATATATATAT
1 T-TATATATAT
26013090 TTATATATAT
1 TTATATATAT
26013100 TTATATA
1 TTATATA
26013107 CATGTATTAA
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
8 5 0.14
10 24 0.65
11 8 0.22
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.54
Consensus pattern (10 bp):
TTATATATAT
Found at i:26017133 original size:24 final size:21
Alignment explanation
Indices: 26017077--26017134 Score: 64
Period size: 21 Copynumber: 2.6 Consensus size: 21
26017067 AAAATAATAA
*
26017077 AGTAGATTATATATTATTTTT
1 AGTAAATTATATATTATTTTT
26017098 A-TAATATTATATATTATGATTTT
1 AGTAA-ATTATATATTAT--TTTT
26017121 AGTAAATTCATATA
1 AGTAAATT-ATATA
26017135 AGAATAATTA
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
20 2 0.06
21 13 0.42
23 8 0.26
24 8 0.26
ACGTcount: A:0.40, C:0.02, G:0.07, T:0.52
Consensus pattern (21 bp):
AGTAAATTATATATTATTTTT
Found at i:26017443 original size:16 final size:16
Alignment explanation
Indices: 26017422--26017461 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
26017412 CAATTGAACT
26017422 ATTACAGTTCTATTCC
1 ATTACAGTTCTATTCC
** *
26017438 ATTACAACTCTATTCT
1 ATTACAGTTCTATTCC
26017454 ATTACAGT
1 ATTACAGT
26017462 GAACCAAACG
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.30, C:0.23, G:0.05, T:0.42
Consensus pattern (16 bp):
ATTACAGTTCTATTCC
Found at i:26018550 original size:25 final size:25
Alignment explanation
Indices: 26018518--26018580 Score: 108
Period size: 25 Copynumber: 2.5 Consensus size: 25
26018508 TTAAACTAAG
*
26018518 CAGAATACAGATTTAACATACAATC
1 CAGAATACAGATTGAACATACAATC
*
26018543 CAGAATACAAATTGAACATACAATC
1 CAGAATACAGATTGAACATACAATC
26018568 CAGAATACAGATT
1 CAGAATACAGATT
26018581 CCAAAATTCC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.49, C:0.19, G:0.10, T:0.22
Consensus pattern (25 bp):
CAGAATACAGATTGAACATACAATC
Found at i:26023183 original size:36 final size:36
Alignment explanation
Indices: 26023125--26023205 Score: 90
Period size: 36 Copynumber: 2.2 Consensus size: 36
26023115 TTGTGAACCA
* *
26023125 TGTTAACTTAGTGAATTATATTATTATGGAAAACTG
1 TGTTAATTTAGTGAATTATATTAATATGGAAAACTG
* * * **
26023161 TGTTAATTTGGTGATTTGTATTAATATGGCGAACTG
1 TGTTAATTTAGTGAATTATATTAATATGGAAAACTG
*
26023197 TATTAATTT
1 TGTTAATTT
26023206 TCCAAACTAT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.31, C:0.05, G:0.19, T:0.46
Consensus pattern (36 bp):
TGTTAATTTAGTGAATTATATTAATATGGAAAACTG
Found at i:26030182 original size:13 final size:14
Alignment explanation
Indices: 26030136--26030182 Score: 55
Period size: 13 Copynumber: 3.5 Consensus size: 14
26030126 GATTCATGCC
26030136 ATGAAATA-ATTAT
1 ATGAAATAGATTAT
*
26030149 ATG-AATCGATTAT
1 ATGAAATAGATTAT
26030162 ATGAAAATAGA-TAT
1 ATG-AAATAGATTAT
26030176 ATGAAAT
1 ATGAAAT
26030183 GGAACATTGG
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
12 3 0.10
13 15 0.52
14 6 0.21
15 5 0.17
ACGTcount: A:0.51, C:0.02, G:0.13, T:0.34
Consensus pattern (14 bp):
ATGAAATAGATTAT
Found at i:26033334 original size:4 final size:4
Alignment explanation
Indices: 26033319--26033376 Score: 53
Period size: 4 Copynumber: 14.0 Consensus size: 4
26033309 TAAACCCTTT
* * * * *
26033319 TTTA TCTTA TTTA TTTA TTTA TTTA TTTA CTTTT TTTG CTTA TTTA TATC
1 TTTA T-TTA TTTA TTTA TTTA TTTA TTTA -TTTA TTTA TTTA TTTA TTTA
26033369 TTTA TTTA
1 TTTA TTTA
26033377 AACTTTATTA
Statistics
Matches: 43, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
4 36 0.84
5 7 0.16
ACGTcount: A:0.21, C:0.07, G:0.02, T:0.71
Consensus pattern (4 bp):
TTTA
Found at i:26033343 original size:33 final size:33
Alignment explanation
Indices: 26033306--26033379 Score: 78
Period size: 33 Copynumber: 2.2 Consensus size: 33
26033296 TTTAAGCTAC
* *
26033306 ATTTAAACCCTTTTTTAT-CTTATTTATTTATTT
1 ATTTAAACACTTTTTT-TGCTTATTTATATATTT
*** *
26033339 ATTTATTTACTTTTTTTGCTTATTTATATCTTT
1 ATTTAAACACTTTTTTTGCTTATTTATATATTT
26033372 ATTTAAAC
1 ATTTAAAC
26033380 TTTATTATAC
Statistics
Matches: 31, Mismatches: 9, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
32 1 0.03
33 30 0.97
ACGTcount: A:0.24, C:0.11, G:0.01, T:0.64
Consensus pattern (33 bp):
ATTTAAACACTTTTTTTGCTTATTTATATATTT
Found at i:26034153 original size:112 final size:110
Alignment explanation
Indices: 26033851--26034179 Score: 523
Period size: 110 Copynumber: 3.0 Consensus size: 110
26033841 CATCAAAAAC
* *
26033851 AAAAATTTTCAAATAAGGCAATGTTTTGCGTTTGGGAAATTTGAGAAAACGTGCCCTAAGGTACT
1 AAAAATTTTCAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCT
*
26033916 GGGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATATCCTTTT
66 GGGTGTCGATTTTTCTCGTTCAACCAAATGGCTAAATATCCTTTT
* * * *
26033961 AAAAATTTTCAAAAAAGGCAATGTTTTGGGTTTGGAAAATTCGAGAGAACGTGCCCTAAGGTGCT
1 AAAAATTTTCAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCT
*
26034026 AGGTGTCGATTTTTCTCGTTCAACCAAATGGCTAAATATCCTTTT
66 GGGTGTCGATTTTTCTCGTTCAACCAAATGGCTAAATATCCTTTT
*
26034071 AAAAATTTTTCGAAATAAGGCAATGTTTTGCATTTGGGAAATTCGAGAAAACGTGCCCTAAGGTG
1 AAAAA-TTTTC-AAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTG
* * * *
26034136 CTGGGTGTCGATATTTCTCGTTTAACCAAATAGCCAAATATCCT
64 CTGGGTGTCGATTTTTCTCGTTCAACCAAATGGCTAAATATCCT
26034180 CTCGAATTTC
Statistics
Matches: 199, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
110 107 0.54
111 5 0.03
112 87 0.44
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (110 bp):
AAAAATTTTCAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCT
GGGTGTCGATTTTTCTCGTTCAACCAAATGGCTAAATATCCTTTT
Found at i:26038395 original size:14 final size:14
Alignment explanation
Indices: 26038373--26038417 Score: 60
Period size: 13 Copynumber: 3.4 Consensus size: 14
26038363 AAAAGAAAAG
26038373 AAAA-GAAAAATG-
1 AAAATGAAAAATGA
*
26038385 AGAATGAAAAATGA
1 AAAATGAAAAATGA
26038399 AAAATG-AAAATGA
1 AAAATGAAAAATGA
26038412 AAAATG
1 AAAATG
26038418 GAGAGGCTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
12 3 0.10
13 21 0.72
14 5 0.17
ACGTcount: A:0.69, C:0.00, G:0.18, T:0.13
Consensus pattern (14 bp):
AAAATGAAAAATGA
Found at i:26038399 original size:7 final size:7
Alignment explanation
Indices: 26038373--26038417 Score: 60
Period size: 7 Copynumber: 6.9 Consensus size: 7
26038363 AAAAGAAAAG
26038373 AAAA-GA
1 AAAATGA
26038379 AAAATG-
1 AAAATGA
*
26038385 AGAATGA
1 AAAATGA
26038392 AAAATGA
1 AAAATGA
26038399 AAAATG-
1 AAAATGA
26038405 AAAATGA
1 AAAATGA
26038412 AAAATG
1 AAAATG
26038418 GAGAGGCTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
6 15 0.44
7 19 0.56
ACGTcount: A:0.69, C:0.00, G:0.18, T:0.13
Consensus pattern (7 bp):
AAAATGA
Found at i:26038402 original size:20 final size:20
Alignment explanation
Indices: 26038361--26038417 Score: 75
Period size: 20 Copynumber: 3.0 Consensus size: 20
26038351 ACTCTGAGTC
*
26038361 AAAAAAGAAAA-G-AAAA-G
1 AAAAATGAAAATGAAAAATG
*
26038378 AAAAATGAGAATGAAAAATG
1 AAAAATGAAAATGAAAAATG
26038398 AAAAATGAAAATGAAAAATG
1 AAAAATGAAAATGAAAAATG
26038418 GAGAGGCTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
17 9 0.26
18 1 0.03
19 4 0.12
20 20 0.59
ACGTcount: A:0.72, C:0.00, G:0.18, T:0.11
Consensus pattern (20 bp):
AAAAATGAAAATGAAAAATG
Found at i:26039822 original size:86 final size:85
Alignment explanation
Indices: 26039673--26040115 Score: 629
Period size: 86 Copynumber: 5.3 Consensus size: 85
26039663 AGTGGAGCTG
* * *
26039673 GATCTTGCCTTCCTGCATTAACAACGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCAGTTGCA
1 GATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCA
26039738 GTGGAGCTGGTTGAAGAAGCA
66 GTGGAGCTGGTT-AAGAAGCA
* **
26039759 GATCTTGCCTTCCTGTGTTAACAGCGAAGCAGATAAAAAACAAAGCCTTGCCTCCATCGGTTGCA
1 GATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCA
26039824 GTGGAGC----T-----G--
66 GTGGAGCTGGTTAAGAAGCA
* *
26039833 GATCTTACCTTCCTGTGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCA
1 GATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCA
26039898 GTGGAGCTGGTTAAAGAAGCA
66 GTGGAGCTGGTT-AAGAAGCA
* * *
26039919 GATCTTGCCTTCCTGCATTAATAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCAGTTGCA
1 GATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCA
*
26039984 GTAGAGCTGGTTAAAGAAGCA
66 GTGGAGCTGGTT-AAGAAGCA
*
26040005 GATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCACCGGTTGCA
1 GATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCA
* *
26040070 GTGGAGCTGGTTATCGAAACA
66 GTGGAGCTGGTTA-AGAAGCA
*
26040091 GATCTTGCCTTCCTACGTTAACAGC
1 GATCTTGCCTTCCTGCGTTAACAGC
26040116 AGACCAAACT
Statistics
Matches: 321, Mismatches: 23, Indels: 26
0.87 0.06 0.07
Matches are distributed among these distances:
74 69 0.21
76 1 0.00
78 1 0.00
82 1 0.00
84 1 0.00
85 1 0.00
86 247 0.77
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.23
Consensus pattern (85 bp):
GATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCA
GTGGAGCTGGTTAAGAAGCA
Found at i:26039898 original size:160 final size:159
Alignment explanation
Indices: 26039629--26040115 Score: 677
Period size: 160 Copynumber: 3.0 Consensus size: 159
26039619 AGATTAGTGA
* * *
26039629 AGATAAAAAACAAAGCCTTGCCTCCATTGATTGCAGTGGAGCTGGATCTTGCCTTCCTGCATTAA
1 AGATAAAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGATCTTGCCTTCCTGCGTTAA
* *
26039694 CAACGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCAGTTGCAGTGGAGCTGGTTGAAGAAGCA
66 CAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTT-AAGAAGCA
*
26039759 GATCTTGCCTTCCTGTGTTAACAGCGAAGC
130 GATCTTGCCTTCCTGCGTTAACAGCGAAGC
* *
26039789 AGATAAAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGATCTTACCTTCCTGTGTTAA
1 AGATAAAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGATCTTGCCTTCCTGCGTTAA
26039854 CAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGAAGCA
66 CAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTT-AAGAAGCA
* *
26039919 GATCTTGCCTTCCTGCATTAATAGCGAAGC
130 GATCTTGCCTTCCTGCGTTAACAGCGAAGC
** * *
26039949 AGATCGAAAACAAAGCCTTGCCTCCATCAGTTGCAGTAGAGCTGGTTAAAGAAGCAGATCTTGCC
1 AGATAAAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGC----T------G--GATCTTGCC
*
26040014 TTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCACCGGTTGCAGTGGAGCTG
54 TTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTG
* * *
26040079 GTTATCGAAACAGATCTTGCCTTCCTACGTTAACAGC
119 GTTA-AGAAGCAGATCTTGCCTTCCTGCGTTAACAGC
26040116 AGACCAAACT
Statistics
Matches: 291, Mismatches: 23, Indels: 14
0.89 0.07 0.04
Matches are distributed among these distances:
160 187 0.64
164 1 0.00
170 1 0.00
171 1 0.00
172 101 0.35
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.23
Consensus pattern (159 bp):
AGATAAAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGATCTTGCCTTCCTGCGTTAA
CAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAGAAGCAG
ATCTTGCCTTCCTGCGTTAACAGCGAAGC
Found at i:26040055 original size:43 final size:43
Alignment explanation
Indices: 26039840--26040057 Score: 112
Period size: 43 Copynumber: 5.1 Consensus size: 43
26039830 CTGGATCTTA
*
26039840 CCTTCCTGTGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTG
1 CCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTG
* * * * * ** * *
26039883 CC-TCCAT-CGGTT-GCAGTGGAGCTGGTTAAAGAAGCAGA-TCTTG
1 CCTTCC-TGC-GTTAACAGCGAAGCAGATCGAA-AA-CAAAGCCTTG
* *
26039926 CCTTCCTGCATTAATAGCGAAGCAGATCGAAAACAAAGCCTTG
1 CCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTG
* * * * ** * *
26039969 CC-TCCAT-CAGTT-GCAG-TAGAGCTGGTTAAAGAAGCAGA-TCTTG
1 CCTTCC-TGC-GTTAACAGCGA-AGCAGATCGAA-AA-CAAAGCCTTG
26040012 CCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTG
1 CCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTG
26040055 CCT
1 CCT
26040058 CCACCGGTTG
Statistics
Matches: 118, Mismatches: 39, Indels: 36
0.61 0.20 0.19
Matches are distributed among these distances:
41 1 0.01
42 33 0.28
43 49 0.42
44 34 0.29
45 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.22
Consensus pattern (43 bp):
CCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTG
Found at i:26040175 original size:44 final size:44
Alignment explanation
Indices: 26040127--26040406 Score: 206
Period size: 43 Copynumber: 6.5 Consensus size: 44
26040117 GACCAAACTG
* *
26040127 AAGACCA-CATATCTTATCTCCCTAAACAGTAGTGGAGCAGATCA
1 AAGACCACCA-ATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCA
** * * * * * **
26040171 AAGACGGCGAATCTTATCTTCCTAAGCAGTAGTGAAGCTGATTT
1 AAGACCACCAATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCA
* * *
26040215 AAG-CTACCAGTCCTATCTCCCTAAGCAGTAGTGGAGCAGGTCA
1 AAGACCACCAATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCA
**** *
26040258 AAGA-TGGTAGATCCTATCTCCCTAAGCAGTAGTGGAGCAAATC-
1 AAGACCACCA-ATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCA
* * *
26040301 --G--CATCAAGTCTTATCTCCCTAAGCAGTTGTGGAGCAGA-CA
1 AAGACCACCAA-TCCTATCTCCCTAAGCAGTAGTGGAGCAGATCA
* *
26040341 GAAGA-AACCAATCCTATCTCCCTAAGCAGTAGTGGAGTAGAT-A
1 -AAGACCACCAATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCA
*
26040384 GAAGA-AACCAATCCTATCTCCCT
1 -AAGACCACCAATCCTATCTCCCT
26040407 GAAGTTATAG
Statistics
Matches: 188, Mismatches: 38, Indels: 21
0.76 0.15 0.09
Matches are distributed among these distances:
39 2 0.01
40 28 0.15
41 1 0.01
43 86 0.46
44 70 0.37
45 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.24
Consensus pattern (44 bp):
AAGACCACCAATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCA
Found at i:26040375 original size:83 final size:84
Alignment explanation
Indices: 26040223--26040377 Score: 224
Period size: 84 Copynumber: 1.9 Consensus size: 84
26040213 TTAAGCTACC
* ****
26040223 AGTCCTATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGGTAGATCCTATCTCCCTAAGCAGT
1 AGTCCTATCTCCCTAAGCAGTAGTGGAGCAGGACAAAGAAACCAGATCCTATCTCCCTAAGCAGT
26040288 AGTGGAGCAAATCGCATCA
66 AGTGGAGCAAATCGCATCA
* *
26040307 AGTCTTATCTCCCTAAGCAGTTGTGGAGCA-GACAGAAGAAACCA-ATCCTATCTCCCTAAGCAG
1 AGTCCTATCTCCCTAAGCAGTAGTGGAGCAGGACA-AAGAAACCAGATCCTATCTCCCTAAGCAG
26040370 TAGTGGAG
65 TAGTGGAG
26040378 TAGATAGAAG
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
83 30 0.48
84 33 0.52
ACGTcount: A:0.30, C:0.24, G:0.23, T:0.23
Consensus pattern (84 bp):
AGTCCTATCTCCCTAAGCAGTAGTGGAGCAGGACAAAGAAACCAGATCCTATCTCCCTAAGCAGT
AGTGGAGCAAATCGCATCA
Found at i:26041264 original size:20 final size:21
Alignment explanation
Indices: 26041225--26041265 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
26041215 AAGGTGATTT
* *
26041225 TTTTTTGTTATTTTAGATTCG
1 TTTTTTCTTATTTTACATTCG
26041246 TTTTTTCTTATTTT-CATTCG
1 TTTTTTCTTATTTTACATTCG
26041266 GTTCATTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.12, C:0.10, G:0.10, T:0.68
Consensus pattern (21 bp):
TTTTTTCTTATTTTACATTCG
Found at i:26042044 original size:30 final size:30
Alignment explanation
Indices: 26042010--26042067 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
26042000 ATTTAAACCC
*
26042010 TTTTTTTAT-CTTATTTATTTATTTATTTAG
1 TTTTTTT-TGCTTATTTATATATTTATTTAG
*
26042040 TTTTTTTTGCTTATTTATATCTTTATTT
1 TTTTTTTTGCTTATTTATATATTTATTT
26042068 TAAACTTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 1 0.04
30 24 0.96
ACGTcount: A:0.17, C:0.05, G:0.03, T:0.74
Consensus pattern (30 bp):
TTTTTTTTGCTTATTTATATATTTATTTAG
Found at i:26042840 original size:112 final size:110
Alignment explanation
Indices: 26042540--26042866 Score: 528
Period size: 110 Copynumber: 3.0 Consensus size: 110
26042530 TCAAAAACAG
* *
26042540 AAATTTTCAAATAAGGCAATGTTTTGCGTTTGGGAAATTTGAGAAAACGTGCCCTAAGGTACTGG
1 AAATTTTCAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGG
*
26042605 GTGTCGATTTTTCTCATTCAACCAAATGGCTAAATATCCTTTTAA
66 GTGTCGATTTTTCTCGTTCAACCAAATGGCTAAATATCCTTTTAA
* * *
26042650 AAATTTTCAAAAAAGGCAATGTTTTGCGTTTGGAAAATTCGAGAGAACGTGCCCTAAGGTGCTGG
1 AAATTTTCAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGG
*
26042715 GTGTCGATTTTTCTCGTTCAACCAAATGGCTAACTATCCTTTTAA
66 GTGTCGATTTTTCTCGTTCAACCAAATGGCTAAATATCCTTTTAA
*
26042760 AAATTTTTCGAAATAAGGCAATGTTTTGCATTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCT
1 AAA-TTTTC-AAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCT
* * * *
26042825 GGGTGTCGATATTTCTCGTTTAACCAAATAGCCAAATATCCT
64 GGGTGTCGATTTTTCTCGTTCAACCAAATGGCTAAATATCCT
26042867 CTCGAATTTC
Statistics
Matches: 199, Mismatches: 16, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
110 106 0.53
111 5 0.03
112 88 0.44
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (110 bp):
AAATTTTCAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGG
GTGTCGATTTTTCTCGTTCAACCAAATGGCTAAATATCCTTTTAA
Found at i:26057046 original size:24 final size:24
Alignment explanation
Indices: 26057019--26057070 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
26057009 TTAGTAAGTC
*
26057019 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* * *
26057043 AAATATATTATACTAATAATTACT
1 AAATAAACTATACTAATAAATACT
26057067 AAAT
1 AAAT
26057071 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.54, C:0.10, G:0.02, T:0.35
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:26059014 original size:24 final size:24
Alignment explanation
Indices: 26058987--26059038 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
26058977 TTAGTAAGTC
*
26058987 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* * *
26059011 AAATATATTATACTAATAATTACT
1 AAATAAACTATACTAATAAATACT
26059035 AAAT
1 AAAT
26059039 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.54, C:0.10, G:0.02, T:0.35
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:26059255 original size:47 final size:47
Alignment explanation
Indices: 26059194--26059573 Score: 634
Period size: 47 Copynumber: 8.0 Consensus size: 47
26059184 AATGATAGTG
26059194 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
*
26059241 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
26059288 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATA
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATA
*
26059337 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
*
26059384 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
26059431 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
*
26059478 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACA
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
* * * * * * * *
26059525 GGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATA
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
26059572 AG
1 AG
26059574 TCCCGAAGGG
Statistics
Matches: 316, Mismatches: 15, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
47 270 0.85
49 46 0.15
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
Found at i:26059452 original size:143 final size:141
Alignment explanation
Indices: 26059194--26059573 Score: 643
Period size: 143 Copynumber: 2.7 Consensus size: 141
26059184 AATGATAGTG
26059194 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGT
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGT
26059259 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
66 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--
26059324 TATATATGTGATA
129 TATATATGTGATA
*
26059337 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGT
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGT
26059402 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
66 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
26059467 TATATGTGATA
131 TATATGTGATA
* * * * * * *
26059478 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGT
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGT
* * *
26059543 GATGGATGTGAAAGTGCATAAATGTGATAAG
66 GATGAATGTGAAAGTGTATATATGTGATAAG
26059574 TCCCGAAGGG
Statistics
Matches: 225, Mismatches: 12, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
141 98 0.44
143 127 0.56
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (141 bp):
AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGT
GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
TATATGTGATA
Found at i:26059748 original size:37 final size:37
Alignment explanation
Indices: 26059692--26059770 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
26059682 CCGAGCTCTA
* *
26059692 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
26059729 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
26059766 AAGAC
1 AAGAC
26059771 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:26069805 original size:12 final size:13
Alignment explanation
Indices: 26069776--26069820 Score: 58
Period size: 12 Copynumber: 3.6 Consensus size: 13
26069766 TCTAAATGAA
26069776 TTCATTTCTCATT
1 TTCATTTCTCATT
*
26069789 ATCATTT-TCATT
1 TTCATTTCTCATT
26069801 TTCATTTCT-ATT
1 TTCATTTCTCATT
*
26069813 TTTATTTC
1 TTCATTTC
26069821 AATTTTGAGA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
12 21 0.75
13 7 0.25
ACGTcount: A:0.18, C:0.18, G:0.00, T:0.64
Consensus pattern (13 bp):
TTCATTTCTCATT
Found at i:26069813 original size:18 final size:19
Alignment explanation
Indices: 26069776--26069820 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 19
26069766 TCTAAATGAA
26069776 TTCATTTCTCATTATCATT
1 TTCATTTCTCATTATCATT
26069795 TTCATTT-TCATT-TCTATT
1 TTCATTTCTCATTATC-ATT
*
26069813 TTTATTTC
1 TTCATTTC
26069821 AATTTTGAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
17 2 0.09
18 14 0.61
19 7 0.30
ACGTcount: A:0.18, C:0.18, G:0.00, T:0.64
Consensus pattern (19 bp):
TTCATTTCTCATTATCATT
Found at i:26077010 original size:29 final size:29
Alignment explanation
Indices: 26076968--26077031 Score: 119
Period size: 29 Copynumber: 2.2 Consensus size: 29
26076958 TGATAAAGGT
*
26076968 CAAGATATCATATGCAGGCTGCTCCATCC
1 CAAGCTATCATATGCAGGCTGCTCCATCC
26076997 CAAGCTATCATATGCAGGCTGCTCCATCC
1 CAAGCTATCATATGCAGGCTGCTCCATCC
26077026 CAAGCT
1 CAAGCT
26077032 GAACTCCTCT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.27, C:0.33, G:0.17, T:0.23
Consensus pattern (29 bp):
CAAGCTATCATATGCAGGCTGCTCCATCC
Found at i:26080813 original size:23 final size:23
Alignment explanation
Indices: 26080779--26080876 Score: 108
Period size: 23 Copynumber: 4.3 Consensus size: 23
26080769 AAACACATAA
26080779 TATTCTATAAAGCCTTTGTGGCG
1 TATTCTATAAAGCCTTTGTGGCG
* * *
26080802 TATTCTACAAAGACTTTGTGGCA
1 TATTCTATAAAGCCTTTGTGGCG
* *
26080825 TATTCTATAAAGCCTTTCTAGCG
1 TATTCTATAAAGCCTTTGTGGCG
* * *
26080848 TATTCTGTGATG-CTTGTGTGGCG
1 TATTCTATAAAGCCTT-TGTGGCG
26080871 TATTCT
1 TATTCT
26080877 GTGATGCCCT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
22 3 0.05
23 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.20, T:0.41
Consensus pattern (23 bp):
TATTCTATAAAGCCTTTGTGGCG
Found at i:26092852 original size:128 final size:128
Alignment explanation
Indices: 26091556--26092835 Score: 2152
Period size: 128 Copynumber: 10.0 Consensus size: 128
26091546 TCGGTCAAAT
** *
26091556 CACAAGTCCTATAACCCTGGA-CAGCAGTGGAATAGGTTAGAAATTGCAGATTTTGTCTCCCTAA
1 CACAAGTCCTATGTCCCT-GACCAGCAGTGGAATAGGTTGGAAATTGCAGATTTTGTCTCCCTAA
* *
26091620 GCAGTAGCGGAGCAGATCGAAGATGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGC
65 GCAGTAGCGGAGCAGATCGAAGACGGTGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGC
* * *
26091684 CACAAGTCCTATGTCCCTAACCAGCAGTGGAATAGGTTGGAAATTGCAAATCTTGTCTCCCTAAG
1 CACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTGGAAATTGCAGATTTTGTCTCCCTAAG
* * *
26091749 CAGTAGGGGAGCAGATCAAAGACGATGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGC
66 CAGTAGCGGAGCAGATCGAAGACGGTGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGC
* *
26091812 CACAAGTCCTATGTCCCTGACC-GACAGTGGAATAGGTTAGAAATTGCAGATCTTGTCTCCCTAA
1 CACAAGTCCTATGTCCCTGACCAG-CAGTGGAATAGGTTGGAAATTGCAGATTTTGTCTCCCTAA
*
26091876 GCAGTAGCGGAGCAGATCGAAGACGGCG-ATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGC
65 GCAGTAGCGGAGCAGATCGAAGACGGTGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGC
*
26091939 CACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTGGAAATTGTAGATTTTGTCTCCCTAAG
1 CACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTGGAAATTGCAGATTTTGTCTCCCTAAG
* *
26092004 CAGTAGCGGAGCAGATCGAAGACGGTGAATCTTATCTTCAAGTGTAAGGAAGAATATTTAAGC
66 CAGTAGCGGAGCAGATCGAAGACGGTGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGC
* *
26092067 CACAAGTCTTATGTCCCTGACCAGCAGTGGAATAGGTTGGAAATTGCAGATCTTGTCTCCCTAAG
1 CACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTGGAAATTGCAGATTTTGTCTCCCTAAG
* *
26092132 CAGTAGCGGAGCACATCAAAGACGGTGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGC
66 CAGTAGCGGAGCAGATCGAAGACGGTGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGC
*
26092195 CACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTGGAAATTACAGATTTTGTCTCCCTAAG
1 CACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTGGAAATTGCAGATTTTGTCTCCCTAAG
* * *
26092260 CAGTAGCGGAGCAGATCGAAGACGGTGAATCTTATTTTTAAGTGTAAGGAAGCAAATTTAAGC
66 CAGTAGCGGAGCAGATCGAAGACGGTGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGC
26092323 CACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTGGAAATTGCAGATTTTGTCTCCCTAAG
1 CACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTGGAAATTGCAGATTTTGTCTCCCTAAG
* * * * *
26092388 CAGTAGCAGAGCAGATCGGAGATGGTGAATCTTATCTTCAAGTGTAAAGAAGCAGATTTAAGA
66 CAGTAGCGGAGCAGATCGAAGACGGTGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGC
*
26092451 CACAAGTCCTATGTCCTTGACCAGCAGTGGAATAGGTTGGAAATTGCAGATTTTGTCTCCCTAAG
1 CACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTGGAAATTGCAGATTTTGTCTCCCTAAG
* *
26092516 CAGTAGCGAAGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGC
66 CAGTAGCGGAGCAGATCGAAGACGGTGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGC
* *
26092579 CACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTGGAAATTACAGATTTTGTCTCCTTAAG
1 CACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTGGAAATTGCAGATTTTGTCTCCCTAAG
* * *
26092644 CAATAGCGGAGCAGATCGAAGACGGTGAATCTTATTTTCAAGTGTAAGGAAGCAAATTTAAGC
66 CAGTAGCGGAGCAGATCGAAGACGGTGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGC
* *
26092707 CACAAGTCCTATGTCCCTAACCAGCAGTGGAATAGGTTGGAAATTGCAGATTTTGTCTCCCAAAG
1 CACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTGGAAATTGCAGATTTTGTCTCCCTAAG
*
26092772 CAGTAGCGGAGCAGATCGAAGACGGTGAATCTTATCTTCAAGTGTAAGGAAGCAGATTGAAGC
66 CAGTAGCGGAGCAGATCGAAGACGGTGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGC
26092835 C
1 C
26092836 GATGATCCTA
Statistics
Matches: 1076, Mismatches: 72, Indels: 8
0.93 0.06 0.01
Matches are distributed among these distances:
127 123 0.11
128 953 0.89
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (128 bp):
CACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTGGAAATTGCAGATTTTGTCTCCCTAAG
CAGTAGCGGAGCAGATCGAAGACGGTGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGC
Found at i:26093228 original size:217 final size:216
Alignment explanation
Indices: 26092822--26093356 Score: 890
Period size: 217 Copynumber: 2.5 Consensus size: 216
26092812 AGTGTAAGGA
* * * *
26092822 AGCAGATTGAAGCCGATGATCCTATCTCCCTGAAGTTGTAGTGGAACACATTAAAGTAATAGATC
1 AGCAGATTGAAGTCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGTAATAGATC
* * *
26092887 TTATCTCTCTGAAGTTGCAGTAGAGTGATCGTATCAGGTCTTACCTCCCTGAAGTCACAGTGGAG
66 TTATCTCTCTGAAGTTGCAGTAGAGAGATCGCATCAGGTCTTACCTCCCTAAAGTCACAGTGGAG
* * *
26092952 CAGACTAAGAAAACAAGTCTTATCCCTCTGAGGTCACAGTGGGGCAGGCGGAAGAAGAAAATCTT
131 CAGACTAAGAAAACAAGTCTTATCCCCCTGAAGTCACAGTGGGGCAGACGGAAGAAGAAAATCTT
26093017 ATCTCCCTGAGGTTGCAGTGG
196 ATCTCCCTGAGGTTGCAGTGG
*
26093038 AGCAGATTGAAGTCGATAATCCTATCTCCCTGAAGTTTTAGTGGAGCAGATTAAAGTAATAGATC
1 AGCAGATTGAAGTCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGTAATAGATC
* * *
26093103 TAATCTCTCTGAAGTTGCAGTAGAGAGGATCGCATTAGGTCTTACCTTCCTAAAGTCACAGTGGA
66 TTATCTCTCTGAAGTTGCAGTAGAGA-GATCGCATCAGGTCTTACCTCCCTAAAGTCACAGTGGA
26093168 GCAGACTAAGAAAACAAGTCTTATCCCCCTGAAGTCACAGTGGGGCAGACGGAAGAAGAAAATCT
130 GCAGACTAAGAAAACAAGTCTTATCCCCCTGAAGTCACAGTGGGGCAGACGGAAGAAGAAAATCT
*
26093233 TATCTCCCTGAGGTTGTAGTGG
195 TATCTCCCTGAGGTTGCAGTGG
*
26093255 AGCAGATTGAAGTCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATC
1 AGCAGATTGAAGTCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGTAATAGATC
* *
26093320 TTATCTCTCTGGAGTTACAGTAGAGCAGATCGCATCA
66 TTATCTCTCTGAAGTTGCAGTAGAG-AGATCGCATCA
26093357 AGTATTATCG
Statistics
Matches: 296, Mismatches: 21, Indels: 3
0.93 0.07 0.01
Matches are distributed among these distances:
216 84 0.28
217 211 0.71
218 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.26
Consensus pattern (216 bp):
AGCAGATTGAAGTCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGTAATAGATC
TTATCTCTCTGAAGTTGCAGTAGAGAGATCGCATCAGGTCTTACCTCCCTAAAGTCACAGTGGAG
CAGACTAAGAAAACAAGTCTTATCCCCCTGAAGTCACAGTGGGGCAGACGGAAGAAGAAAATCTT
ATCTCCCTGAGGTTGCAGTGG
Found at i:26093293 original size:44 final size:44
Alignment explanation
Indices: 26092822--26093349 Score: 206
Period size: 44 Copynumber: 12.2 Consensus size: 44
26092812 AGTGTAAGGA
* * * *
26092822 AGCAGATTGAAGCCGATGATCCTATCTCCCTGAAGTTGTAGTGG
1 AGCAGATTGAAGTCGATAATCTTATCTCCCTGAAGTTGCAGTGG
* * * * * *
26092866 AACACATTAAAGT-AATAGATCTTATCTCTCTGAAGTTGCAGTAG
1 AGCAGATTGAAGTCGATA-ATCTTATCTCCCTGAAGTTGCAGTGG
* * * ** * **
26092910 AG-TGATCGTA-TC-A-GGTCTTACCTCCCTGAAGTCACAGTGG
1 AGCAGATTGAAGTCGATAATCTTATCTCCCTGAAGTTGCAGTGG
* *** * * **
26092950 AGCAGACT-AAGAAAACAAGTCTTATC-CCTCTGAGGTCACAGTGG
1 AGCAGATTGAAGTCGATAA-TCTTATCTCC-CTGAAGTTGCAGTGG
* *** ** * *
26092994 GGCAGGCGGAAGAAGAAAATCTTATCTCCCTGAGGTTGCAGTGG
1 AGCAGATTGAAGTCGATAATCTTATCTCCCTGAAGTTGCAGTGG
* **
26093038 AGCAGATTGAAGTCGATAATCCTATCTCCCTGAAGTTTTAGTGG
1 AGCAGATTGAAGTCGATAATCTTATCTCCCTGAAGTTGCAGTGG
* * * *
26093082 AGCAGATTAAAGT-AATAGATCTAATCTCTCTGAAGTTGCAGT--
1 AGCAGATTGAAGTCGATA-ATCTTATCTCCCTGAAGTTGCAGTGG
* * * * * **
26093124 AG-AGA--GGA-TCGCATTAGGTCTTACCTTCCTAAAGTCACAGTGG
1 AGCAGATTGAAGTCG-A-TA-ATCTTATCTCCCTGAAGTTGCAGTGG
* *** * * **
26093167 AGCAGACT-AAGAAAACAAGTCTTATCCCCCTGAAGTCACAGTGG
1 AGCAGATTGAAGTCGATAA-TCTTATCTCCCTGAAGTTGCAGTGG
* ** ** * * *
26093211 GGCAGACGGAAGAAGAAAATCTTATCTCCCTGAGGTTGTAGTGG
1 AGCAGATTGAAGTCGATAATCTTATCTCCCTGAAGTTGCAGTGG
* *
26093255 AGCAGATTGAAGTCGATAATCCTATCTCCCTGAAGTTGTAGTGG
1 AGCAGATTGAAGTCGATAATCTTATCTCCCTGAAGTTGCAGTGG
* * * * * * *
26093299 AGCGGATTAAAGT-AATAGATCTTATCTCTCTGGAGTTACAGTAG
1 AGCAGATTGAAGTCGATA-ATCTTATCTCCCTGAAGTTGCAGTGG
26093343 AGCAGAT
1 AGCAGAT
26093350 CGCATCAAGT
Statistics
Matches: 355, Mismatches: 106, Indels: 46
0.70 0.21 0.09
Matches are distributed among these distances:
38 1 0.00
39 1 0.00
40 24 0.07
41 24 0.07
42 5 0.01
43 15 0.04
44 265 0.75
45 20 0.06
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.26
Consensus pattern (44 bp):
AGCAGATTGAAGTCGATAATCTTATCTCCCTGAAGTTGCAGTGG
Found at i:26102232 original size:61 final size:61
Alignment explanation
Indices: 26102125--26102286 Score: 164
Period size: 61 Copynumber: 2.7 Consensus size: 61
26102115 AACAGAGGTT
* * * *** ** * *
26102125 GCCACAAAGGCTTACCTTTCTAGAGTTCCGCCACAAAGGTTTTCCTTTACATCTAGTACTC
1 GCCACAAAGGCTTTCCTATCCAGAGTTTTACCACAAAGGTAGTCCTTTACATCCAATACTC
* * *
26102186 GTCATAAATGCTTTCCTATCCA-ATGTTTTACCACAAAGGTAGTCCTTTACATCCAATACTC
1 GCCACAAAGGCTTTCCTATCCAGA-GTTTTACCACAAAGGTAGTCCTTTACATCCAATACTC
* * *
26102247 GCCACAAAGGCTTTCCTGTCTAGAGTTTTTCCACAAAGGT
1 GCCACAAAGGCTTTCCTATCCAGAGTTTTACCACAAAGGT
26102287 GTCTTTTTTC
Statistics
Matches: 80, Mismatches: 19, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
60 1 0.01
61 78 0.98
62 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.14, T:0.32
Consensus pattern (61 bp):
GCCACAAAGGCTTTCCTATCCAGAGTTTTACCACAAAGGTAGTCCTTTACATCCAATACTC
Found at i:26102487 original size:53 final size:52
Alignment explanation
Indices: 26102430--26102616 Score: 198
Period size: 53 Copynumber: 3.5 Consensus size: 52
26102420 TATAACTCGC
** *
26102430 CAGTTACGATCTTACATGATATGGTCTTCTTCCTATATGATGCCATAACCCA
1 CAGTTACGATCTTACACAATATGGTCTTCTTCCCATATGATGCCATAACCCA
* * * * *
26102482 TCAGTTACGGTCTTATACAATTTGGTGTTCTTCCCATATGATGTCATAACCCA
1 -CAGTTACGATCTTACACAATATGGTCTTCTTCCCATATGATGCCATAACCCA
* * *
26102535 CCTGTTA-TAGTTTTACACAATATGGTCTTCTTCCCATATGATGCCATAACCCA
1 -CAGTTACGA-TCTTACACAATATGGTCTTCTTCCCATATGATGCCATAACCCA
* *
26102588 CTAGTTATGGTCTTACA-AGATATGGTCTT
1 C-AGTTACGATCTTACACA-ATATGGTCTT
26102617 ATAATGTTAT
Statistics
Matches: 109, Mismatches: 21, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
52 2 0.02
53 107 0.98
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.37
Consensus pattern (52 bp):
CAGTTACGATCTTACACAATATGGTCTTCTTCCCATATGATGCCATAACCCA
Found at i:26106875 original size:1 final size:1
Alignment explanation
Indices: 26106871--26106895 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
26106861 ATGAAAAAGC
26106871 AAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAA
26106896 CAGCATATTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:26108322 original size:13 final size:13
Alignment explanation
Indices: 26108306--26108333 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
26108296 TTAACCCTGC
26108306 ATTTTATAATTTA
1 ATTTTATAATTTA
26108319 ATTTTATAATTTA
1 ATTTTATAATTTA
26108332 AT
1 AT
26108334 CTAACTCAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (13 bp):
ATTTTATAATTTA
Found at i:26108416 original size:17 final size:17
Alignment explanation
Indices: 26108394--26108433 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
26108384 TTTAGTTAGA
26108394 TAAATTAATTTCTCAAT
1 TAAATTAATTTCTCAAT
*
26108411 TAAATTATTTTCTCAAT
1 TAAATTAATTTCTCAAT
*
26108428 CAAATT
1 TAAATT
26108434 TTAATTTCGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.40, C:0.12, G:0.00, T:0.47
Consensus pattern (17 bp):
TAAATTAATTTCTCAAT
Found at i:26122327 original size:30 final size:31
Alignment explanation
Indices: 26122293--26122358 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 31
26122283 CTCACACGGT
* *
26122293 CGTGTAACATTCAAAAAAAGGG-CACATGGC
1 CGTGTAACATTCAAAAAAAGGGACACACGAC
* *
26122323 CGTGTAACATTCGAACAAAGGGACACACGAC
1 CGTGTAACATTCAAAAAAAGGGACACACGAC
26122354 CGTGT
1 CGTGT
26122359 CCCAACCCGC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
30 20 0.65
31 11 0.35
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.17
Consensus pattern (31 bp):
CGTGTAACATTCAAAAAAAGGGACACACGAC
Found at i:26126102 original size:136 final size:136
Alignment explanation
Indices: 26125858--26126128 Score: 434
Period size: 136 Copynumber: 2.0 Consensus size: 136
26125848 AGCCACATGT
* *
26125858 CTACCCCTGTTTTACGATACATCCATGCCATATTGGCGCACACAGTGACGAGACAAAAAGAAAGA
1 CTACCCCTGCTTTACGATACATCCATGCCATATTGGCACACACAGTGACGAGACAAAAAGAAAGA
*
26125923 ACAGGGGTCATGAGTACTTTGGACGCATATTTTTTATGAAGTATGGAAGAGCACCACCCAATTGA
66 ACAGGGGTCATGAGTACTTTGGACGCATATTTTTTATGAAGTATAGAAGAGCACCACCCAATTGA
26125988 TGTTGC
131 TGTTGC
* * * * *
26125994 CTACCCCTGCTTTACGATACATCTATGCCATATTGGCATACACAGTGACGAGTCGAAAAGAAAGC
1 CTACCCCTGCTTTACGATACATCCATGCCATATTGGCACACACAGTGACGAGACAAAAAGAAAGA
* * * *
26126059 ACGGGGGTCATGAGTACTTTGGACGCATATTTTTTATGAAGTATAGAGGAGCGCCACCCGATTGA
66 ACAGGGGTCATGAGTACTTTGGACGCATATTTTTTATGAAGTATAGAAGAGCACCACCCAATTGA
26126124 TGTTG
131 TGTTG
26126129 AGTATTTTGT
Statistics
Matches: 123, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
136 123 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (136 bp):
CTACCCCTGCTTTACGATACATCCATGCCATATTGGCACACACAGTGACGAGACAAAAAGAAAGA
ACAGGGGTCATGAGTACTTTGGACGCATATTTTTTATGAAGTATAGAAGAGCACCACCCAATTGA
TGTTGC
Found at i:26130092 original size:21 final size:21
Alignment explanation
Indices: 26130021--26130093 Score: 56
Period size: 21 Copynumber: 3.2 Consensus size: 21
26130011 TGATGGCAAG
26130021 AAAAATAAAGGTTTACATCACC
1 AAAAAT-AAGGTTTACATCACC
* ***
26130043 TAAACAATAACGAAGTTTAAATTGGC
1 -AAA-AATAA-G--GTTTACATCACC
26130069 AAAAATAAGGTTTACATCACC
1 AAAAATAAGGTTTACATCACC
26130090 AAAA
1 AAAA
26130094 CTAGAGGTGT
Statistics
Matches: 38, Mismatches: 8, Indels: 10
0.68 0.14 0.18
Matches are distributed among these distances:
21 12 0.32
23 6 0.16
24 9 0.24
25 3 0.08
26 8 0.21
ACGTcount: A:0.51, C:0.15, G:0.11, T:0.23
Consensus pattern (21 bp):
AAAAATAAGGTTTACATCACC
Found at i:26130289 original size:20 final size:20
Alignment explanation
Indices: 26130260--26130298 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
26130250 AATAAACACC
*
26130260 AAAAATTATTTTAAAAATAA
1 AAAAAGTATTTTAAAAATAA
26130280 AAAAAGTATTTTAAAAATA
1 AAAAAGTATTTTAAAAATA
26130299 TTTTAAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (20 bp):
AAAAAGTATTTTAAAAATAA
Found at i:26130782 original size:4 final size:4
Alignment explanation
Indices: 26130773--26130835 Score: 126
Period size: 4 Copynumber: 15.8 Consensus size: 4
26130763 CACGAACTAT
26130773 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
26130821 ATAG ATAG ATAG ATA
1 ATAG ATAG ATAG ATA
26130836 TTGATAACGT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 59 1.00
ACGTcount: A:0.51, C:0.00, G:0.24, T:0.25
Consensus pattern (4 bp):
ATAG
Found at i:26132990 original size:105 final size:101
Alignment explanation
Indices: 26132868--26133061 Score: 273
Period size: 105 Copynumber: 1.9 Consensus size: 101
26132858 TTTGTAGTGT
* * *
26132868 CATAACTTAGTTATGGTCTTATCATCAGAATGCCATAGCCCAACTATGATCTTACACATGT-ATC
1 CATAACTCAGTTATGGTCTTATCATCAAAATGCCATAGCCCAACTATGATCTT--ACATGTAAAC
26132932 TATACTGCCATGGTCCAACCATGGTCTTACGTTCAAGGTGC
64 -AT--TGCCATGGTCCAACCATGGTCTTACGTTCAAGGTGC
* * * *
26132973 CATAACTCAGTTATGGTCTTTTCATTAAAATGCCATAGCCCAACTATGGTCTTACATTTAAACAT
1 CATAACTCAGTTATGGTCTTATCATCAAAATGCCATAGCCCAACTATGATCTTACATGTAAACAT
26133038 TGCCATGGTCCAACCATGGTCTTA
66 TGCCATGGTCCAACCATGGTCTTA
26133062 TCCGTCAATT
Statistics
Matches: 81, Mismatches: 7, Indels: 6
0.86 0.07 0.06
Matches are distributed among these distances:
101 24 0.30
103 7 0.09
104 2 0.02
105 48 0.59
ACGTcount: A:0.28, C:0.24, G:0.15, T:0.32
Consensus pattern (101 bp):
CATAACTCAGTTATGGTCTTATCATCAAAATGCCATAGCCCAACTATGATCTTACATGTAAACAT
TGCCATGGTCCAACCATGGTCTTACGTTCAAGGTGC
Found at i:26133021 original size:33 final size:36
Alignment explanation
Indices: 26132984--26133060 Score: 90
Period size: 35 Copynumber: 2.2 Consensus size: 36
26132974 ATAACTCAGT
*
26132984 TATGGTCTTTTCA-TTAAA-A-TGCCATAGCCCAAC
1 TATGGTCTTTACATTTAAACATTGCCATAGCCCAAC
* *
26133017 TATGGTC-TTACATTTAAACATTGCCATGGTCCAAC
1 TATGGTCTTTACATTTAAACATTGCCATAGCCCAAC
*
26133052 CATGGTCTT
1 TATGGTCTT
26133061 ATCCGTCAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
32 4 0.11
33 12 0.33
34 1 0.03
35 18 0.50
36 1 0.03
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.35
Consensus pattern (36 bp):
TATGGTCTTTACATTTAAACATTGCCATAGCCCAAC
Found at i:26135950 original size:34 final size:36
Alignment explanation
Indices: 26135867--26135967 Score: 102
Period size: 34 Copynumber: 2.9 Consensus size: 36
26135857 AAATCATTTG
*
26135867 TGTGCCCAACACTAGTCAAACTAGTCAACAAATTAT
1 TGTGCCCAACACTAGTCAAACTACTCAACAAATTAT
* * *
26135903 TGCGCCCAGCACTAGTCAAA-TAACT-AAC-GA-TAGT
1 TGTGCCCAACACTAGTCAAACT-ACTCAACAAATTA-T
* *
26135937 TGTGCCCAACACTAGTCAAACGAGTCAACAA
1 TGTGCCCAACACTAGTCAAACTACTCAACAA
26135968 TTTTTTGCAC
Statistics
Matches: 51, Mismatches: 9, Indels: 10
0.73 0.13 0.14
Matches are distributed among these distances:
33 2 0.04
34 22 0.43
35 7 0.14
36 20 0.39
ACGTcount: A:0.38, C:0.27, G:0.15, T:0.21
Consensus pattern (36 bp):
TGTGCCCAACACTAGTCAAACTACTCAACAAATTAT
Found at i:26135953 original size:70 final size:70
Alignment explanation
Indices: 26135867--26136022 Score: 197
Period size: 70 Copynumber: 2.2 Consensus size: 70
26135857 AAATCATTTG
* *
26135867 TGTGCCCAACACTAGTCAAACTAGTCAACAAATTATTGCGCCCAGCACTAGTCAAATAACTAAC-
1 TGTGCCCAACACTAGTCAAACGAGTCAACAAATTATTGCACCCAGCACTAGTCAAATAACTAACA
*
26135931 GATAGT
66 G-TAAT
* * * ** * *
26135937 TGTGCCCAACACTAGTCAAACGAGTCAACAATTTTTTGCACCTAGTGCTAGTCAGATAACTGACA
1 TGTGCCCAACACTAGTCAAACGAGTCAACAAATTATTGCACCCAGCACTAGTCAAATAACTAACA
26136002 GTAAT
66 GTAAT
*
26136007 TGTGCCCAGCACTAGT
1 TGTGCCCAACACTAGT
26136023 TAGATAAACT
Statistics
Matches: 74, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
70 73 0.99
71 1 0.01
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (70 bp):
TGTGCCCAACACTAGTCAAACGAGTCAACAAATTATTGCACCCAGCACTAGTCAAATAACTAACA
GTAAT
Found at i:26138421 original size:25 final size:24
Alignment explanation
Indices: 26138393--26138474 Score: 85
Period size: 25 Copynumber: 3.3 Consensus size: 24
26138383 CATGTAAACA
26138393 GGAAGCTCTTCCGAGCCATATAACG
1 GGAAGCTCTT-CGAGCCATATAACG
* *
26138418 GGAAGTTCATTTGAGCCATATAACG
1 GGAAGCTC-TTCGAGCCATATAACG
* * *
26138443 GGAAGCTCATGCGAGCCA-ATATCA
1 GGAAGCTC-TTCGAGCCATATAACG
26138467 GGAAGCTC
1 GGAAGCTC
26138475 CGGAGAGCCA
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
24 12 0.24
25 35 0.71
26 2 0.04
ACGTcount: A:0.30, C:0.23, G:0.26, T:0.21
Consensus pattern (24 bp):
GGAAGCTCTTCGAGCCATATAACG
Found at i:26138505 original size:25 final size:23
Alignment explanation
Indices: 26138444--26138657 Score: 106
Period size: 25 Copynumber: 8.7 Consensus size: 23
26138434 CATATAACGG
* *
26138444 GAAGCTCATGCGAGCCAATATCA
1 GAAGCTCATGAGAGCCATTATCA
** *
26138467 GGAAGCTCCGGAGAGCCATTAATTA
1 -GAAGCTCATGAGAGCCATT-ATCA
*
26138492 GTAAGCTCATGAGATCCAGTTATCGA
1 G-AAGCTCATGAGAGCCA-TTATC-A
* * *
26138518 GAAGCTCATGAGAGCCAAATAACGG
1 GAAGCTCATGAGAGCC-ATTATC-A
*
26138543 GAAGCTCAAGAGAGCCATATATC-
1 GAAGCTCATGAGAGCCAT-TATCA
* * * *
26138566 GATATGCTCATAAGAGCTAAATAACGA
1 GA-A-GCTCATGAGAGC-CATTATC-A
* *
26138593 GAAGCTCGTGAGAGCCTAGTATCA
1 GAAGCTCATGAGAGCC-ATTATCA
*
26138617 GGAAGCTCATGAGAGTCAATTATCA
1 -GAAGCTCATGAGAG-CCATTATCA
* *
26138642 GGATGCTCATAAGAGC
1 -GAAGCTCATGAGAGC
26138658 TAAAAAATGG
Statistics
Matches: 145, Mismatches: 31, Indels: 28
0.71 0.15 0.14
Matches are distributed among these distances:
23 2 0.01
24 20 0.14
25 113 0.78
26 8 0.06
27 2 0.01
ACGTcount: A:0.36, C:0.20, G:0.25, T:0.20
Consensus pattern (23 bp):
GAAGCTCATGAGAGCCATTATCA
Found at i:26138548 original size:50 final size:49
Alignment explanation
Indices: 26138430--26138631 Score: 171
Period size: 50 Copynumber: 4.1 Consensus size: 49
26138420 AAGTTCATTT
* * * **
26138430 GAGCCATATAACGGGAAGCTCATGCGAGCCAATATCAGGAAGCTCCGGA
1 GAGCCAAATAACGGGAAGCTCATGAGAGCCATTATCAGGAAGCTCATGA
* * *
26138479 GAGCCATTAATTA--GTAAGCTCATGAGATCCAGTTATC-GAGAAGCTCATGA
1 GAGCCA--AATAACGGGAAGCTCATGAGAGCCA-TTATCAG-GAAGCTCATGA
* *
26138529 GAGCCAAATAACGGGAAGCTCAAGAGAGCCATATATC--GATATGCTCATAA
1 GAGCCAAATAACGGGAAGCTCATGAGAGCCAT-TATCAGGA-A-GCTCATGA
* * * *
26138579 GAGCTAAATAACGAGAAGCTCGTGAGAGCCTAGTATCAGGAAGCTCATGA
1 GAGCCAAATAACGGGAAGCTCATGAGAGCC-ATTATCAGGAAGCTCATGA
26138629 GAG
1 GAG
26138632 TCAATTATCA
Statistics
Matches: 122, Mismatches: 19, Indels: 23
0.74 0.12 0.14
Matches are distributed among these distances:
48 6 0.05
49 24 0.20
50 85 0.70
51 5 0.04
52 2 0.02
ACGTcount: A:0.36, C:0.20, G:0.26, T:0.19
Consensus pattern (49 bp):
GAGCCAAATAACGGGAAGCTCATGAGAGCCATTATCAGGAAGCTCATGA
Found at i:26138575 original size:75 final size:74
Alignment explanation
Indices: 26138430--26138657 Score: 192
Period size: 75 Copynumber: 3.1 Consensus size: 74
26138420 AAGTTCATTT
* * * ** *
26138430 GAGCCATATAACGGGAAGCTCATGCGAGCCAATATCAGGAAGCTCCGGAGAGCCATTAATTAGTA
1 GAGCCAAATAACGAGAAGCTCATGAGAGCCAATATCAGGAAGCTCAAGAGAGCCATTAATGAGTA
*
26138495 AGCTCATGA
66 AGCTCATAA
* ** * * *
26138504 GATCCAGTTATCGAGAAGCTCATGAGAGCCAAATAACGGGAAGCTCAAGAGAGCCA-TATATCGA
1 GAGCCAAATAACGAGAAGCTCATGAGAGCC-AATATCAGGAAGCTCAAGAGAGCCATTA-AT-GA
*
26138568 -TATGCTCATAA
63 GTAAGCTCATAA
* * * * * *
26138579 GAGCTAAATAACGAGAAGCTCGTGAGAGCCTAGTATCAGGAAGCTCATGAGAGTCAATT-ATCAG
1 GAGCCAAATAACGAGAAGCTCATGAGAGCC-AATATCAGGAAGCTCAAGAGAG-CCATTAATGAG
* *
26138643 GATGCTCATAA
64 TAAGCTCATAA
26138654 GAGC
1 GAGC
26138658 TAAAAAATGG
Statistics
Matches: 121, Mismatches: 27, Indels: 11
0.76 0.17 0.07
Matches are distributed among these distances:
74 27 0.22
75 90 0.74
76 3 0.02
77 1 0.01
ACGTcount: A:0.36, C:0.20, G:0.25, T:0.20
Consensus pattern (74 bp):
GAGCCAAATAACGAGAAGCTCATGAGAGCCAATATCAGGAAGCTCAAGAGAGCCATTAATGAGTA
AGCTCATAA
Found at i:26139818 original size:21 final size:21
Alignment explanation
Indices: 26139792--26139833 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
26139782 ATCAAAATTT
26139792 TCATACGATATTTTTATCATA
1 TCATACGATATTTTTATCATA
26139813 TCATACGATATTTTTATCATA
1 TCATACGATATTTTTATCATA
26139834 CTTTAGACTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.14, G:0.05, T:0.48
Consensus pattern (21 bp):
TCATACGATATTTTTATCATA
Found at i:26141857 original size:128 final size:127
Alignment explanation
Indices: 26141467--26141929 Score: 437
Period size: 131 Copynumber: 3.6 Consensus size: 127
26141457 AATCAACGAC
* * * * * * *
26141467 ATTTTAAAGTTGTTGTTAATATTTTAATGTTTAACAATAACTCATTTTGTCATTTACAAA-CTTA
1 ATTTTAAGGTTGTTGCTAATATTTTAACGTTTAAC-A-ACCT-ATTTTTTC-GTTACAAATTTTA
* * * *
26141531 TTAAGAATTTACAATGACAAATCGTGTTATTGCAACTAATAAGTAGAAAATTAAAATAGCTAACG
62 TTAAGAATTTACAATGACAAATCGTGTCATTGCAACTAATAAGCAGAAAATTAAATTA-CTAACA
*
26141596 AC
126 AT
*** *
26141598 ATTTTAAGGTTGTTGCTAATATTTTTAACGTTTAACAATAAATTATTTATTGTTACAAATTTTAT
1 ATTTTAAGGTTGTTGCTAATA-TTTTAACGTTTAACAACCTATT-TTT-TCGTTACAAATTTTAT
* * * * * *
26141663 T-AGTAATTCACAACT-ACAAATCATTTCATTGCTATTAATAAGCAGAAAATTAAATTACTTATC
63 TAAG-AATTTACAA-TGACAAATCGTGTCATTGCAACTAATAAGCAGAAAATTAAATTAC-TAAC
26141726 AAT
125 AAT
* * * * *
26141729 ATTTTAAGGTTGTTGCTAAGATTTTAATGTTTAACAACCTGTTTTTTCGTTACAACTTTTTTTAA
1 ATTTTAAGGTTGTTGCTAATATTTTAACGTTTAACAACCTATTTTTTCGTTACAAATTTTATTAA
* * * * *
26141794 GAATTTGCAATGACAAATTGTGTCATTGCAACGAATAAGCATAAAATTAAATTTCATAACAAT
66 GAATTTACAATGACAAATCGTGTCATTGCAACTAATAAGCAGAAAATTAAATTAC-TAACAAT
* * * * * *
26141857 ATTTTAAGGTTTTTTCTAATATTTTAACATTTACAACAACCTATTTTGTCTTTATAAATTTTATT
1 ATTTTAAGGTTGTTGCTAATATTTTAACGTTT--AACAACCTATTTTTTCGTTACAAATTTTATT
26141922 AAGAATTT
64 AAGAATTT
26141930 TAGTCGTATC
Statistics
Matches: 268, Mismatches: 53, Indels: 23
0.78 0.15 0.07
Matches are distributed among these distances:
127 1 0.00
128 89 0.33
129 8 0.03
130 63 0.24
131 93 0.35
132 14 0.05
ACGTcount: A:0.37, C:0.11, G:0.10, T:0.42
Consensus pattern (127 bp):
ATTTTAAGGTTGTTGCTAATATTTTAACGTTTAACAACCTATTTTTTCGTTACAAATTTTATTAA
GAATTTACAATGACAAATCGTGTCATTGCAACTAATAAGCAGAAAATTAAATTACTAACAAT
Found at i:26143138 original size:5 final size:5
Alignment explanation
Indices: 26143128--26143192 Score: 53
Period size: 5 Copynumber: 13.0 Consensus size: 5
26143118 CCTCTGCTTA
* * * * *
26143128 GTTCT GTTCT GTTAT GCTCT GCTT-T GTTTT GTTAT GTTCT GCTT-T GCTCT
1 GTTCT GTTCT GTTCT GTTCT G-TTCT GTTCT GTTCT GTTCT G-TTCT GTTCT
26143178 GTTCT GTTCT GTTCT
1 GTTCT GTTCT GTTCT
26143193 ACTTTGCTTT
Statistics
Matches: 48, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
4 3 0.06
5 42 0.88
6 3 0.06
ACGTcount: A:0.03, C:0.18, G:0.20, T:0.58
Consensus pattern (5 bp):
GTTCT
Found at i:26143147 original size:25 final size:24
Alignment explanation
Indices: 26143119--26143238 Score: 107
Period size: 25 Copynumber: 4.8 Consensus size: 24
26143109 AACACACATC
*
26143119 CTCTGCTTAGTTCTGTTCTGTTATG
1 CTCTGCTT-GTTCTGTTCTGTTCTG
* *
26143144 CTCTGCTTTGTTTTGTTATGTTCTG
1 CTCTGC-TTGTTCTGTTCTGTTCTG
* *
26143169 CTTTGCTCTGTTCTGTTCTGTTCTA
1 CTCTGCT-TGTTCTGTTCTGTTCTG
* *
26143194 CTTTGCTTTGTTTTGTGT-TGTTCTG
1 CTCTGC-TTGTTCTGT-TCTGTTCTG
*
26143219 CTCTGCTCTGTCCTGTTCTG
1 CTCTGCT-TGTTCTGTTCTG
26143239 GTTGGGTTGT
Statistics
Matches: 77, Mismatches: 12, Indels: 12
0.76 0.12 0.12
Matches are distributed among these distances:
24 3 0.04
25 70 0.91
26 4 0.05
ACGTcount: A:0.03, C:0.21, G:0.20, T:0.56
Consensus pattern (24 bp):
CTCTGCTTGTTCTGTTCTGTTCTG
Found at i:26143185 original size:20 final size:20
Alignment explanation
Indices: 26143135--26143188 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 20
26143125 TTAGTTCTGT
* *
26143135 TCTGTTATGCTCTGCTTTGT
1 TCTGTTATGTTCTGCTTTGC
*
26143155 TTTGTTATGTTCTGCTTTGC
1 TCTGTTATGTTCTGCTTTGC
*
26143175 TCTGTTCTGTTCTG
1 TCTGTTATGTTCTG
26143189 TTCTACTTTG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.04, C:0.19, G:0.20, T:0.57
Consensus pattern (20 bp):
TCTGTTATGTTCTGCTTTGC
Found at i:26143203 original size:50 final size:50
Alignment explanation
Indices: 26143119--26143238 Score: 163
Period size: 50 Copynumber: 2.4 Consensus size: 50
26143109 AACACACATC
*
26143119 CTCTGCT-TAGTTCTGTTCTGTTATGCTCTGCTTTGTTTTGT-TATGTTCTG
1 CTCTGCTCT-GTTCTGTTCTGTTATACTCTGCTTTGTTTTGTGT-TGTTCTG
* * *
26143169 CTTTGCTCTGTTCTGTTCTGTTCTACTTTGCTTTGTTTTGTGTTGTTCTG
1 CTCTGCTCTGTTCTGTTCTGTTATACTCTGCTTTGTTTTGTGTTGTTCTG
*
26143219 CTCTGCTCTGTCCTGTTCTG
1 CTCTGCTCTGTTCTGTTCTG
26143239 GTTGGGTTGT
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
50 60 0.97
51 2 0.03
ACGTcount: A:0.03, C:0.21, G:0.20, T:0.56
Consensus pattern (50 bp):
CTCTGCTCTGTTCTGTTCTGTTATACTCTGCTTTGTTTTGTGTTGTTCTG
Found at i:26144229 original size:70 final size:69
Alignment explanation
Indices: 26144091--26144238 Score: 154
Period size: 70 Copynumber: 2.1 Consensus size: 69
26144081 GGACCAGTCT
** ** * * *
26144091 TTTTTCTTAACTAATGTTTAGTGTATATTACAACAAAAGGGATTAATCCTTTTAATATAAGGATC
1 TTTTTCTTAACTAATGTTTAGTGTATATTACAACAAAACCGAACAATCATTGTAATATAAGGAGC
26144156 AATCC
66 AAT-C
* ** * *
26144161 TTTTTCTTAACTAATGTTTAGTGTATTTTTTAATCAAAACCGAACAAT-ATTGTAATATATGTAG
1 TTTTTCTTAACTAATGTTTAGTGTATATTACAA-CAAAACCGAACAATCATTGTAATATAAGGAG
26144225 CAATC
65 CAATC
26144230 TATTTTCTT
1 T-TTTTCTT
26144239 TGCATAATCA
Statistics
Matches: 64, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
69 2 0.03
70 52 0.81
71 10 0.16
ACGTcount: A:0.34, C:0.12, G:0.10, T:0.44
Consensus pattern (69 bp):
TTTTTCTTAACTAATGTTTAGTGTATATTACAACAAAACCGAACAATCATTGTAATATAAGGAGC
AATC
Found at i:26145135 original size:130 final size:128
Alignment explanation
Indices: 26144773--26145154 Score: 425
Period size: 124 Copynumber: 3.0 Consensus size: 128
26144763 ATATCAAATC
* *
26144773 AACGACATTTTAAGGTTGTTGCTAATATTTTAATGTTTAACAATAACTTATTTTAT-TGTTACAA
1 AACGATATTTTAAGGTTGTTGCTAATATTTTAATGTTT-ACAACAACTTATTTT-TCT-TTACAA
* * ** * * * *
26144837 ATTTGATTAATAATTCACAACTACAAATCGTGTCATTACTATTAATAAGCAGAAAATTAAATTAC
63 ATTTTATTAAGAATTTGCAA-TACAAATCGTGTCATTGCAATGAATAAGCATAAAATTAAATTAC
*
26144902 GT
127 AT
**** * * *
26144904 CTTAATATTTTAAGGTTGTTGTTAATATTTTAATGTTT--AAC-A--TGTTTTTCCTTACAAATT
1 AACGATATTTTAAGGTTGTTGCTAATATTTTAATGTTTACAACAACTTATTTTTCTTTACAAATT
* *
26144964 TTATTGAGAATTTGCAATAACAAATTGTGTCATTGCAATGAATAAGCATAAAATTAAATTACAT
66 TTATTAAGAATTTGCAAT-ACAAATCGTGTCATTGCAATGAATAAGCATAAAATTAAATTACAT
**
26145028 AACGATATTTTAAGGTTGTTGCTAATATTTTAACATTTACAACAACTTATTTTGTCTTTACAAAT
1 AACGATATTTTAAGGTTGTTGCTAATATTTTAATGTTTACAACAACTTATTTT-TCTTTACAAAT
* * **
26145093 TTTATTAAGAATTTGCAATGACAAATCATATTGTTGCAATGAATAAGCATAAAATTAAATTA
65 TTTATTAAGAATTTGCAAT-ACAAATCGTGTCATTGCAATGAATAAGCATAAAATTAAATTA
26145155 TGTATTGTTG
Statistics
Matches: 207, Mismatches: 36, Indels: 17
0.80 0.14 0.07
Matches are distributed among these distances:
123 1 0.00
124 92 0.44
125 5 0.02
126 3 0.01
127 2 0.01
128 2 0.01
129 5 0.02
130 65 0.31
131 32 0.15
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.41
Consensus pattern (128 bp):
AACGATATTTTAAGGTTGTTGCTAATATTTTAATGTTTACAACAACTTATTTTTCTTTACAAATT
TTATTAAGAATTTGCAATACAAATCGTGTCATTGCAATGAATAAGCATAAAATTAAATTACAT
Found at i:26145175 original size:116 final size:117
Alignment explanation
Indices: 26145043--26145275 Score: 326
Period size: 117 Copynumber: 2.0 Consensus size: 117
26145033 TATTTTAAGG
* *
26145043 TTGTTGCTAATATTTTAACATTT-ACAACAACTTATTTTG-TCTTTACAAATTTTATTAAGAATT
1 TTGTTGCTAATATTTTAACATTTAACAACAACTT-GTTTGATCGTTACAAATTTTATTAAGAATT
* *
26145106 TGCAATGACAAATCATATTGTTGCAATGAATAAGCATAAAATTAAATTATGTA
65 TGCAATGAAAAATCATATTGTTGCAATGAATAAGCATAAAAGTAAATTATGTA
* **
26145159 TTGTTGCTAATATTTTAACATTTAACAACAGCTTGTTTGATCGTTACGCATTTTATTAAGAATTT
1 TTGTTGCTAATATTTTAACATTTAACAACAACTTGTTTGATCGTTACAAATTTTATTAAGAATTT
* * * * * *
26145224 GTAATTAAAAATCGTGTTGTTGCAATGAATAAGTATACAAGTAAATTATGTA
66 GCAATGAAAAATCATATTGTTGCAATGAATAAGCATAAAAGTAAATTATGTA
26145276 ACGACATTTT
Statistics
Matches: 102, Mismatches: 13, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
116 27 0.26
117 75 0.74
ACGTcount: A:0.37, C:0.10, G:0.12, T:0.41
Consensus pattern (117 bp):
TTGTTGCTAATATTTTAACATTTAACAACAACTTGTTTGATCGTTACAAATTTTATTAAGAATTT
GCAATGAAAAATCATATTGTTGCAATGAATAAGCATAAAAGTAAATTATGTA
Found at i:26149554 original size:16 final size:16
Alignment explanation
Indices: 26149533--26149574 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
26149523 AATAATTTGA
* *
26149533 TAATTTTACTAACAAT
1 TAATTTTAATAAAAAT
26149549 TAATTTTAATAAAAAT
1 TAATTTTAATAAAAAT
*
26149565 TAGTTTTAAT
1 TAATTTTAAT
26149575 TTTAATTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.45, C:0.05, G:0.02, T:0.48
Consensus pattern (16 bp):
TAATTTTAATAAAAAT
Found at i:26149566 original size:59 final size:67
Alignment explanation
Indices: 26149442--26149566 Score: 167
Period size: 66 Copynumber: 2.0 Consensus size: 67
26149432 TTTTGTTACA
*
26149442 ACAATTAATACAATTAATAATTTGATAAATTTACTAATCAAATGTTAGATTTTATTACAACAATT
1 ACAATTAATACAATTAATAATTTGATAAATTTACTAATCAAA-GTTAGATTTTAATACAACAATT
26149507 AAT
65 AAT
*
26149510 ACAATT-A-ACAATTAATAATTTGATAATTTTACTAA-C-AA-TTA-ATTTTAATA-AA-AATTA
1 ACAATTAATACAATTAATAATTTGATAAATTTACTAATCAAAGTTAGATTTTAATACAACAATTA
26149567 GTTTTAATTT
Statistics
Matches: 55, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
59 5 0.09
60 2 0.04
61 8 0.15
62 3 0.05
64 2 0.04
65 1 0.02
66 27 0.49
67 1 0.02
68 6 0.11
ACGTcount: A:0.49, C:0.08, G:0.03, T:0.40
Consensus pattern (67 bp):
ACAATTAATACAATTAATAATTTGATAAATTTACTAATCAAAGTTAGATTTTAATACAACAATTA
AT
Found at i:26152255 original size:6 final size:7
Alignment explanation
Indices: 26152235--26152260 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
26152225 TAAAGTTGTG
26152235 AAGAAAA
1 AAGAAAA
26152242 AAGAAAA
1 AAGAAAA
26152249 AAGAAAA
1 AAGAAAA
26152256 AAGAA
1 AAGAA
26152261 TGACAATGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (7 bp):
AAGAAAA
Found at i:26164039 original size:20 final size:20
Alignment explanation
Indices: 26164014--26164060 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
26164004 CGTACCTAAG
26164014 CCGTGTGAAAGGT-TACACAC
1 CCGTGTG-AAGGTCTACACAC
**
26164034 CCGTGTGGTGGTCTACACAC
1 CCGTGTGAAGGTCTACACAC
26164054 CCGTGTG
1 CCGTGTG
26164061 CAAGCTGCAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 3 0.12
20 21 0.88
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (20 bp):
CCGTGTGAAGGTCTACACAC
Found at i:26167688 original size:23 final size:24
Alignment explanation
Indices: 26167646--26167706 Score: 60
Period size: 23 Copynumber: 2.7 Consensus size: 24
26167636 CGTTCTTTAT
26167646 TAAATTAGTTATCTATAGCAA-CA
1 TAAATTAGTTATCTATAGCAAGCA
26167669 TAAATTA-TT-TCATATAAGCAAGCA
1 TAAATTAGTTATC-TAT-AGCAAGCA
*
26167693 T--ATTAATTATCTAT
1 TAAATTAGTTATCTAT
26167707 CATTTATTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
21 2 0.06
22 9 0.27
23 17 0.52
24 5 0.15
ACGTcount: A:0.43, C:0.11, G:0.07, T:0.39
Consensus pattern (24 bp):
TAAATTAGTTATCTATAGCAAGCA
Found at i:26174967 original size:34 final size:34
Alignment explanation
Indices: 26174924--26174991 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
26174914 TACTAACGTC
26174924 AAAATTTCTTCTATTCATAGTGGTTTTAGGGTGA
1 AAAATTTCTTCTATTCATAGTGGTTTTAGGGTGA
26174958 AAAATTTCTTCTATTCATAGTGGTTTTAGGGTGA
1 AAAATTTCTTCTATTCATAGTGGTTTTAGGGTGA
26174992 GTTTGGATGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.26, C:0.09, G:0.21, T:0.44
Consensus pattern (34 bp):
AAAATTTCTTCTATTCATAGTGGTTTTAGGGTGA
Found at i:26177043 original size:3 final size:3
Alignment explanation
Indices: 26177035--26177062 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
26177025 GATTAAAATC
26177035 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
26177063 CATTTCTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:26184042 original size:29 final size:28
Alignment explanation
Indices: 26184010--26184104 Score: 73
Period size: 29 Copynumber: 3.2 Consensus size: 28
26184000 CAACTCACTT
26184010 TTTTATTTAATAAACAAGCCCTCAACCTA
1 TTTT-TTTAATAAACAAGCCCTCAACCTA
* * * * * *
26184039 TTTTTGTAGTTAAATAAGCTCTTAATCTA
1 TTTTTTTA-ATAAACAAGCCCTCAACCTA
*
26184068 TGATTTTTACTCATAAACAAGCCCTCAACCTA
1 T--TTTTT--TAATAAACAAGCCCTCAACCTA
26184100 TTTTT
1 TTTTT
26184105 ATGTGAATTT
Statistics
Matches: 48, Mismatches: 13, Indels: 9
0.69 0.19 0.13
Matches are distributed among these distances:
28 3 0.06
29 20 0.42
30 4 0.08
31 4 0.08
32 16 0.33
33 1 0.02
ACGTcount: A:0.33, C:0.20, G:0.06, T:0.41
Consensus pattern (28 bp):
TTTTTTTAATAAACAAGCCCTCAACCTA
Found at i:26185317 original size:16 final size:16
Alignment explanation
Indices: 26185274--26185318 Score: 54
Period size: 16 Copynumber: 2.7 Consensus size: 16
26185264 ACTTTAGGTA
26185274 AAATATATTTACTTTAAT
1 AAAT-TATTTA-TTTAAT
* *
26185292 AAGTTTTTTATTTAAT
1 AAATTATTTATTTAAT
26185308 AAATTATTTAT
1 AAATTATTTAT
26185319 GAGTAAAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
16 15 0.65
17 5 0.22
18 3 0.13
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (16 bp):
AAATTATTTATTTAAT
Found at i:26191544 original size:13 final size:13
Alignment explanation
Indices: 26191526--26191553 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
26191516 ATTTAAAGTG
26191526 AATATGGCTTTTT
1 AATATGGCTTTTT
26191539 AATATGGCTTTTT
1 AATATGGCTTTTT
26191552 AA
1 AA
26191554 GAATTATGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.07, G:0.14, T:0.50
Consensus pattern (13 bp):
AATATGGCTTTTT
Found at i:26192728 original size:20 final size:20
Alignment explanation
Indices: 26192692--26192730 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
26192682 ATGAATATTG
*
26192692 TGTGGTGTGAATGGTGGTCT
1 TGTGGTGTGAATAGTGGTCT
*
26192712 TGTGGTGTGATTAGTGGTC
1 TGTGGTGTGAATAGTGGTC
26192731 GGTAAGGTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.10, C:0.05, G:0.44, T:0.41
Consensus pattern (20 bp):
TGTGGTGTGAATAGTGGTCT
Found at i:26200713 original size:30 final size:31
Alignment explanation
Indices: 26200658--26200725 Score: 84
Period size: 30 Copynumber: 2.2 Consensus size: 31
26200648 ACCCTTAAAA
* * * **
26200658 TATTTACACTATTTATCCTTCAAATTTTTTG
1 TATTTACACTATTAACCCCTCAAATTTTGAG
26200689 TATTTACACT-TTAACCCCTCAAATTTTGAG
1 TATTTACACTATTAACCCCTCAAATTTTGAG
26200719 TATTTAC
1 TATTTAC
26200726 TATTGGGCAA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 22 0.69
31 10 0.31
ACGTcount: A:0.28, C:0.19, G:0.04, T:0.49
Consensus pattern (31 bp):
TATTTACACTATTAACCCCTCAAATTTTGAG
Found at i:26200908 original size:23 final size:23
Alignment explanation
Indices: 26200879--26200922 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
26200869 CTTTCTTACT
**
26200879 GTAGTAATTTTTTGGATATTAAA
1 GTAGTAATTTTCGGGATATTAAA
26200902 GTAGTAATTTTCGGGATATTA
1 GTAGTAATTTTCGGGATATTA
26200923 CAATAATATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.32, C:0.02, G:0.20, T:0.45
Consensus pattern (23 bp):
GTAGTAATTTTCGGGATATTAAA
Found at i:26221671 original size:18 final size:18
Alignment explanation
Indices: 26221648--26221686 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
26221638 TCTGAGGAGC
26221648 AAGGAAACGAAGAAGAGG
1 AAGGAAACGAAGAAGAGG
** *
26221666 AAGGAAGTGATGAAGAGG
1 AAGGAAACGAAGAAGAGG
26221684 AAG
1 AAG
26221687 TTGAGGAGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.51, C:0.03, G:0.41, T:0.05
Consensus pattern (18 bp):
AAGGAAACGAAGAAGAGG
Found at i:26225876 original size:5 final size:6
Alignment explanation
Indices: 26225861--26225890 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
26225851 AGGGTCATCT
26225861 TTTTTA TTTTTA TTTTTA TTTTTA TGTTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA T-TTTT
26225891 TTTGCTTAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 19 0.83
7 4 0.17
ACGTcount: A:0.13, C:0.00, G:0.03, T:0.83
Consensus pattern (6 bp):
TTTTTA
Found at i:26229345 original size:50 final size:50
Alignment explanation
Indices: 26229221--26229461 Score: 213
Period size: 50 Copynumber: 4.7 Consensus size: 50
26229211 GATAATAACA
* * *
26229221 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTTTC-TGTAC--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-GTTCTCATAT-CGG
* * *
26229270 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCAAATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGG
* * ** *
26229320 TGCCCATGCCATGTCCCAAACATGGTCTTAC-TGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAT-GGGAGTTCTCATATCGG
* ** *
26229370 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAACCTCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCAT-A--TC---GG
* *
26229426 TG-CAATGCCATGTTCCAGACATGGCCTTACATGGGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
26229462 TCTCTTTACC
Statistics
Matches: 159, Mismatches: 22, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
48 6 0.04
49 36 0.23
50 80 0.50
51 1 0.01
53 2 0.01
55 31 0.19
56 3 0.02
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGG
Found at i:26243055 original size:20 final size:18
Alignment explanation
Indices: 26243038--26243092 Score: 67
Period size: 17 Copynumber: 3.0 Consensus size: 18
26243028 ATTTGAAATT
26243038 TTTTTTAAATATTGGAAAA
1 TTTTTTAAATATTGG-AAA
* *
26243057 TATGTTTAAATCTTGGAAA
1 T-TTTTTAAATATTGGAAA
26243076 -TTTTTAAATATTGGAAA
1 TTTTTTAAATATTGGAAA
26243093 ATATGTTTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
17 15 0.48
19 4 0.13
20 12 0.39
ACGTcount: A:0.40, C:0.02, G:0.13, T:0.45
Consensus pattern (18 bp):
TTTTTTAAATATTGGAAA
Found at i:26243103 original size:20 final size:20
Alignment explanation
Indices: 26243041--26243104 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
26243031 TGAAATTTTT
26243041 TTTAAATATTGGAAAATATG
1 TTTAAATATTGGAAAATATG
*
26243061 TTTAAATCTTGG-AAAT-T-
1 TTTAAATATTGGAAAATATG
26243078 TTTAAATATTGGAAAATATG
1 TTTAAATATTGGAAAATATG
26243098 TTTAAAT
1 TTTAAAT
26243105 CTTTGATAAC
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
17 11 0.28
18 5 0.13
19 5 0.13
20 18 0.46
ACGTcount: A:0.42, C:0.02, G:0.12, T:0.44
Consensus pattern (20 bp):
TTTAAATATTGGAAAATATG
Found at i:26243215 original size:20 final size:20
Alignment explanation
Indices: 26243192--26243229 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
26243182 ATTAAATGAT
26243192 TATTTTATA-ACTTATATTAA
1 TATTTTATATA-TTATATTAA
26243212 TATTTTATATATTATATT
1 TATTTTATATATTATATT
26243230 TTTTTAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 16 0.94
21 1 0.06
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.61
Consensus pattern (20 bp):
TATTTTATATATTATATTAA
Found at i:26249516 original size:18 final size:17
Alignment explanation
Indices: 26249493--26249540 Score: 51
Period size: 20 Copynumber: 2.6 Consensus size: 17
26249483 TAGAAAAATT
26249493 AATATTTTCTTATGGTAA
1 AATATTTTCTTAT-GTAA
*
26249511 AATATTTTTTCTTATTTAA
1 AATA--TTTTCTTATGTAA
*
26249530 AAAATTTTCTT
1 AATATTTTCTT
26249541 CAAATTATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
17 7 0.27
18 4 0.15
19 6 0.23
20 9 0.35
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.56
Consensus pattern (17 bp):
AATATTTTCTTATGTAA
Found at i:26249530 original size:19 final size:20
Alignment explanation
Indices: 26249497--26249537 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
26249487 AAAATTAATA
*
26249497 TTTTCTTATGGTAAAATATT
1 TTTTCTTATGGTAAAAAATT
*
26249517 TTTTCTTAT-TTAAAAAATT
1 TTTTCTTATGGTAAAAAATT
26249536 TT
1 TT
26249538 CTTCAAATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.59
Consensus pattern (20 bp):
TTTTCTTATGGTAAAAAATT
Found at i:26255726 original size:23 final size:23
Alignment explanation
Indices: 26255699--26255744 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
26255689 TTATTAAAAC
26255699 TAATTATTGTTTAAAAAATTAAG
1 TAATTATTGTTTAAAAAATTAAG
26255722 TAATTATTGTTTAAAAAATTAAG
1 TAATTATTGTTTAAAAAATTAAG
26255745 GTTTAAATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.43
Consensus pattern (23 bp):
TAATTATTGTTTAAAAAATTAAG
Found at i:26256090 original size:20 final size:19
Alignment explanation
Indices: 26256058--26256100 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
26256048 AAATTAGAAA
* **
26256058 AAAAATTGTAAAATTTTAT
1 AAAAATCGTAAAAAATTAT
26256077 AAAAATCGTAAAAAAATTAT
1 AAAAATCGT-AAAAAATTAT
26256097 AAAA
1 AAAA
26256101 TATATAGAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 8 0.40
20 12 0.60
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.30
Consensus pattern (19 bp):
AAAAATCGTAAAAAATTAT
Found at i:26256106 original size:29 final size:29
Alignment explanation
Indices: 26256039--26256153 Score: 85
Period size: 29 Copynumber: 4.0 Consensus size: 29
26256029 AAAAAAGTTC
* * *
26256039 AAATAT-TAAAAATTAGAAAAAAAATTGTA
1 AAATATATAAAAA-TCGTAAAAAAATTATA
*
26256068 AAATTTTATAAAAATCGTAAAAAAATTATA
1 AAA-TATATAAAAATCGTAAAAAAATTATA
* * *
26256098 AAATATATAGAAAT-AT-AAAAAATTTTA
1 AAATATATAAAAATCGTAAAAAAATTATA
* * *
26256125 AAAT-TTTATGAAATCGTAAGAAAATTATA
1 AAATATATA-AAAATCGTAAAAAAATTATA
26256154 CAAAATGTTA
Statistics
Matches: 69, Mismatches: 12, Indels: 10
0.76 0.13 0.11
Matches are distributed among these distances:
26 3 0.04
27 19 0.28
28 2 0.03
29 21 0.30
30 18 0.26
31 6 0.09
ACGTcount: A:0.60, C:0.02, G:0.06, T:0.32
Consensus pattern (29 bp):
AAATATATAAAAATCGTAAAAAAATTATA
Found at i:26256430 original size:18 final size:17
Alignment explanation
Indices: 26256409--26256469 Score: 52
Period size: 16 Copynumber: 3.5 Consensus size: 17
26256399 TAATGTTTAA
26256409 TAAATTTTATATTTTTAT
1 TAAATTTTATATTTTT-T
* *
26256427 TAAACTTTAATAATTTTTC
1 TAAA-TTTTAT-ATTTTTT
*
26256446 TAAAATTTAT-TTTTTT
1 TAAATTTTATATTTTTT
*
26256462 TATATTTT
1 TAAATTTT
26256470 TTTTCTAATT
Statistics
Matches: 34, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
16 11 0.32
18 8 0.24
19 9 0.26
20 6 0.18
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (17 bp):
TAAATTTTATATTTTTT
Done.