Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62811768
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 736185 characters in sequence are not A, C, G, or T
File 95 of 211
Found at i:26256587 original size:89 final size:87
Alignment explanation
Indices: 26256492--26256688 Score: 250
Period size: 90 Copynumber: 2.2 Consensus size: 87
26256482 TAATAAGAGC
* * * *
26256492 AAGGGCTTAATTGTTTTTTTGAAAAAATTTGAGTGTCTTTTTGATGCATTTTAAAAATTCAAGTA
1 AAGGGCTTAATTGTTTTTTTGAAAAAATTTAAGGGTCTTTTTAATACATTTTAAAAATTCAAGTA
26256557 CCCAATTGAGTGAAAAAAAAAA
66 CCCAATTGAGTGAAAAAAAAAA
* * * *
26256579 GAAGGGGCTTAATTGCTTTTCTTGAAGAAGTTTAAGGGTCTTTTTAATACATTTTAAAAGTTCAA
1 -AA-GGGCTTAATTG-TTTTTTTGAAAAAATTTAAGGGTCTTTTTAATACATTTTAAAAATTCAA
* * **
26256644 GTGCTCAATTGAGTGCGAAAAAAAA
63 GTACCCAATTGAGTGAAAAAAAAAA
*
26256669 AAGAGCTTAATTGTTTTTTT
1 AAGGGCTTAATTGTTTTTTT
26256689 TAAGTTTGAA
Statistics
Matches: 93, Mismatches: 14, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
87 6 0.06
88 12 0.13
89 13 0.14
90 62 0.67
ACGTcount: A:0.36, C:0.09, G:0.18, T:0.38
Consensus pattern (87 bp):
AAGGGCTTAATTGTTTTTTTGAAAAAATTTAAGGGTCTTTTTAATACATTTTAAAAATTCAAGTA
CCCAATTGAGTGAAAAAAAAAA
Found at i:26258010 original size:45 final size:46
Alignment explanation
Indices: 26257960--26258076 Score: 148
Period size: 46 Copynumber: 2.6 Consensus size: 46
26257950 GTTGTAATAA
*
26257960 ACATTTTGCTGCTATTTTTGTTGAGT-AAATGTCGCATATGTGTGC
1 ACATTTTGCTGCTATTTTTGTTGAGTAAAATGCCGCATATGTGTGC
* * *
26258005 ACATTTTGTTGTTGTTTTTGTTGAGTAAAATGCCGCATATGTGTGC
1 ACATTTTGCTGCTATTTTTGTTGAGTAAAATGCCGCATATGTGTGC
* * *
26258051 ACA-TCTGCTGCTGCTTTTTGATGAGT
1 ACATTTTGCTGCT-ATTTTTGTTGAGT
26258077 TTAATGATGC
Statistics
Matches: 61, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
45 29 0.48
46 32 0.52
ACGTcount: A:0.19, C:0.14, G:0.23, T:0.44
Consensus pattern (46 bp):
ACATTTTGCTGCTATTTTTGTTGAGTAAAATGCCGCATATGTGTGC
Found at i:26258089 original size:46 final size:46
Alignment explanation
Indices: 26257960--26258090 Score: 131
Period size: 46 Copynumber: 2.9 Consensus size: 46
26257950 GTTGTAATAA
* * * *
26257960 ACATTTTGCTGCTATTTTTGTTGAGT-AAATGTCGCATATGTGTGC
1 ACATTCTGCTGCTGTTTTTGATGAGTAAAATGACGCATATGTGTGC
* * * * *
26258005 ACATTTTGTTGTTGTTTTTGTTGAGTAAAATGCCGCATATGTGTGC
1 ACATTCTGCTGCTGTTTTTGATGAGTAAAATGACGCATATGTGTGC
** *
26258051 ACA-TCTGCTGCTGCTTTTTGATGAGTTTAATGATGCATAT
1 ACATTCTGCTGCTG-TTTTTGATGAGTAAAATGACGCATAT
26258091 ATGAGCCTAG
Statistics
Matches: 72, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
45 30 0.42
46 42 0.58
ACGTcount: A:0.21, C:0.13, G:0.22, T:0.44
Consensus pattern (46 bp):
ACATTCTGCTGCTGTTTTTGATGAGTAAAATGACGCATATGTGTGC
Found at i:26259390 original size:5 final size:5
Alignment explanation
Indices: 26259380--26259405 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
26259370 TCAAAACTTC
26259380 TGGGT TGGGT TGGGT TGGGT TGGGT T
1 TGGGT TGGGT TGGGT TGGGT TGGGT T
26259406 TTGGGGTGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.00, G:0.58, T:0.42
Consensus pattern (5 bp):
TGGGT
Found at i:26277093 original size:24 final size:23
Alignment explanation
Indices: 26277062--26277264 Score: 137
Period size: 24 Copynumber: 8.6 Consensus size: 23
26277052 TAATAGATGG
*
26277062 AATTAAAATAATAATATATGATA
1 AATTAAAATAATAATACATGATA
*
26277085 AATTAAAA-AAGCAATTGCACATGA-A
1 AATTAAAATAA-TAA-T--ACATGATA
*
26277110 AACTTAGAATAATAATACAT-ATAA
1 AA-TTAAAATAATAATACATGAT-A
*
26277134 AACTTAAAATAATAATACATGATG
1 AA-TTAAAATAATAATACATGATA
* *
26277158 AATTTAAATAACAAATACATGATA
1 AATTAAAATAA-TAATACATGATA
* * **
26277182 AATTTAAGTAATGGTA-ATGATA
1 AATTAAAATAATAATACATGATA
* * *
26277204 AATTTAAAATAATAATATATTACA
1 AA-TTAAAATAATAATACATGATA
**
26277228 AATTAAAATAAT-ATTTATGATA
1 AATTAAAATAATAATACATGATA
26277250 AATTTAAGAATAATA
1 AA-TTAA-AATAATA
26277265 TTAAGCTTAA
Statistics
Matches: 143, Mismatches: 22, Indels: 28
0.74 0.11 0.15
Matches are distributed among these distances:
22 20 0.14
23 48 0.34
24 55 0.38
25 6 0.04
26 12 0.08
27 2 0.01
ACGTcount: A:0.56, C:0.05, G:0.07, T:0.32
Consensus pattern (23 bp):
AATTAAAATAATAATACATGATA
Found at i:26279573 original size:20 final size:22
Alignment explanation
Indices: 26279537--26279576 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
26279527 ATTCAATACA
26279537 TACATACAAAGAAATAAAAAAT
1 TACATACAAAGAAATAAAAAAT
26279559 TACATA-AAA-AAATAAAAA
1 TACATACAAAGAAATAAAAA
26279577 TATACTTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 9 0.50
21 3 0.17
22 6 0.33
ACGTcount: A:0.72, C:0.07, G:0.03, T:0.17
Consensus pattern (22 bp):
TACATACAAAGAAATAAAAAAT
Found at i:26286519 original size:14 final size:14
Alignment explanation
Indices: 26286500--26286537 Score: 67
Period size: 14 Copynumber: 2.6 Consensus size: 14
26286490 TCCTAGACAT
26286500 GCACCTTCTCATTA
1 GCACCTTCTCATTA
26286514 GCACCTTCTCATTA
1 GCACCTTCTCATTA
26286528 GCACACTTCT
1 GCAC-CTTCT
26286538 AACAATAATC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 18 0.78
15 5 0.22
ACGTcount: A:0.21, C:0.37, G:0.08, T:0.34
Consensus pattern (14 bp):
GCACCTTCTCATTA
Found at i:26287669 original size:12 final size:12
Alignment explanation
Indices: 26287636--26287669 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
26287626 TTTATCAAAA
*
26287636 TAAATATTAAAT
1 TAAATATTATAT
26287648 TAAATATTATAT
1 TAAATATTATAT
*
26287660 TAAATCTTAT
1 TAAATATTAT
26287670 TAAAATAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (12 bp):
TAAATATTATAT
Found at i:26287737 original size:20 final size:20
Alignment explanation
Indices: 26287712--26287750 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
26287702 CATTAAATTT
26287712 AATTTAATATTAAAATAATC
1 AATTTAATATTAAAATAATC
*
26287732 AATTTAATATTAAATTAAT
1 AATTTAATATTAAAATAAT
26287751 AAAATACTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.44
Consensus pattern (20 bp):
AATTTAATATTAAAATAATC
Found at i:26299205 original size:12 final size:13
Alignment explanation
Indices: 26299190--26299219 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
26299180 TACGTAGGAC
26299190 TTTTTGTTTT-TT
1 TTTTTGTTTTGTT
26299202 TTTTTGTTTTGTT
1 TTTTTGTTTTGTT
26299215 TTTTT
1 TTTTT
26299220 AATTCATAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.59
13 7 0.41
ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90
Consensus pattern (13 bp):
TTTTTGTTTTGTT
Found at i:26310984 original size:21 final size:22
Alignment explanation
Indices: 26310945--26310986 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
26310935 CGGGGTTGAT
* *
26310945 AAATATTTTATAGAGGTATGTA
1 AAATATTTTATAAAAGTATGTA
26310967 AAATATTTTA-AAAAGTATGT
1 AAATATTTTATAAAAGTATGT
26310987 GTGAATTCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.45, C:0.00, G:0.14, T:0.40
Consensus pattern (22 bp):
AAATATTTTATAAAAGTATGTA
Found at i:26317214 original size:16 final size:16
Alignment explanation
Indices: 26317193--26317225 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
26317183 CACTGTATTG
26317193 GAATAGAGGCGTAATA
1 GAATAGAGGCGTAATA
26317209 GAATAGAGGCGTAATA
1 GAATAGAGGCGTAATA
26317225 G
1 G
26317226 CAAATCAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.42, C:0.06, G:0.33, T:0.18
Consensus pattern (16 bp):
GAATAGAGGCGTAATA
Found at i:26319856 original size:13 final size:13
Alignment explanation
Indices: 26319838--26319864 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
26319828 AGCTTTTAAG
26319838 CAATGGTAATATC
1 CAATGGTAATATC
26319851 CAATGGTAATATC
1 CAATGGTAATATC
26319864 C
1 C
26319865 TTGAACAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.30
Consensus pattern (13 bp):
CAATGGTAATATC
Found at i:26320718 original size:13 final size:13
Alignment explanation
Indices: 26320700--26320724 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26320690 GAATCGGTGG
26320700 AGACAGAAAGGTA
1 AGACAGAAAGGTA
26320713 AGACAGAAAGGT
1 AGACAGAAAGGT
26320725 GAGGAGAGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.08, G:0.32, T:0.08
Consensus pattern (13 bp):
AGACAGAAAGGTA
Found at i:26325209 original size:15 final size:15
Alignment explanation
Indices: 26325163--26325211 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 15
26325153 AAAATATATA
*
26325163 TTTATATTATTTTTAA
1 TTTATA-TATTTTTAT
26325179 TTTA-ATATTTAGTTAT
1 TTTATATATTT--TTAT
26325195 TTTATATATTTTTAT
1 TTTATATATTTTTAT
26325210 TT
1 TT
26325212 GTTAAAATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
14 5 0.17
15 7 0.24
16 11 0.38
17 6 0.21
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (15 bp):
TTTATATATTTTTAT
Found at i:26344194 original size:2 final size:2
Alignment explanation
Indices: 26344187--26344212 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
26344177 TATCATGATC
26344187 CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA
26344213 TAATTGATTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:26349774 original size:20 final size:20
Alignment explanation
Indices: 26349733--26349776 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 20
26349723 TACCCCAAAC
26349733 CCCCAAAACATTTTTACTTTT
1 CCCCAAAACA-TTTTACTTTT
26349754 CCCCAAAAC-TTTTACTCTTT
1 CCCCAAAACATTTTACT-TTT
26349774 CCC
1 CCC
26349777 ACTTTCTCCT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 7 0.32
20 6 0.27
21 9 0.41
ACGTcount: A:0.25, C:0.36, G:0.00, T:0.39
Consensus pattern (20 bp):
CCCCAAAACATTTTACTTTT
Found at i:26353969 original size:11 final size:10
Alignment explanation
Indices: 26353941--26354010 Score: 50
Period size: 11 Copynumber: 6.3 Consensus size: 10
26353931 AAGAAATAAT
*
26353941 AAAAGAAACA
1 AAAAGAAAGA
*
26353951 AGATAGAAACGA
1 A-AAAGAAA-GA
*
26353963 AACAGAAAGGA
1 AAAAGAAA-GA
26353974 AAAAGAAAGAA
1 AAAAGAAAG-A
26353985 AAAAGGAAAGAA
1 AAAA-GAAAG-A
26353997 AAAAGGAAAGA
1 AAAA-GAAAGA
26354008 AAA
1 AAA
26354011 GGAGAAAGGG
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
10 2 0.04
11 30 0.59
12 19 0.37
ACGTcount: A:0.73, C:0.04, G:0.21, T:0.01
Consensus pattern (10 bp):
AAAAGAAAGA
Found at i:26353993 original size:12 final size:12
Alignment explanation
Indices: 26353967--26354010 Score: 72
Period size: 12 Copynumber: 3.8 Consensus size: 12
26353957 AAACGAAACA
*
26353967 GAAAGGAAAAA-
1 GAAAGAAAAAAG
26353978 GAAAGAAAAAAG
1 GAAAGAAAAAAG
26353990 GAAAGAAAAAAG
1 GAAAGAAAAAAG
26354002 GAAAGAAAA
1 GAAAGAAAA
26354011 GGAGAAAGGG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
11 10 0.32
12 21 0.68
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (12 bp):
GAAAGAAAAAAG
Found at i:26354018 original size:24 final size:22
Alignment explanation
Indices: 26353924--26354010 Score: 70
Period size: 22 Copynumber: 3.9 Consensus size: 22
26353914 AAACAAAATA
*
26353924 AAAG-AAAAAGAAATAATAAAAG
1 AAAGAAAAAAGAAAGAA-AAAAG
* * * *
26353946 AAACAAGATAGAAACG-AAACAG
1 AAAGAAAAAAGAAA-GAAAAAAG
*
26353968 AAAGGAAAAAGAAAGAAAAAAGG
1 AAAGAAAAAAGAAAGAAAAAA-G
26353991 AAAGAAAAAAGGAAAGAAAA
1 AAAGAAAAAA-GAAAGAAAA
26354011 GGAGAAAGGG
Statistics
Matches: 49, Mismatches: 11, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
21 1 0.02
22 21 0.43
23 18 0.37
24 9 0.18
ACGTcount: A:0.74, C:0.03, G:0.20, T:0.03
Consensus pattern (22 bp):
AAAGAAAAAAGAAAGAAAAAAG
Found at i:26361631 original size:24 final size:24
Alignment explanation
Indices: 26361604--26361650 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
26361594 ATTGAAATGG
26361604 ATTG-ATTTAGTATGTGA-TGAATTT
1 ATTGAATTTA-TAT-TGATTGAATTT
26361628 ATTGAATTTATATTGATTGAATT
1 ATTGAATTTATATTGATTGAATT
26361651 GGTATATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 3 0.14
24 13 0.62
25 5 0.24
ACGTcount: A:0.32, C:0.00, G:0.17, T:0.51
Consensus pattern (24 bp):
ATTGAATTTATATTGATTGAATTT
Found at i:26361648 original size:15 final size:15
Alignment explanation
Indices: 26361628--26361676 Score: 55
Period size: 15 Copynumber: 3.1 Consensus size: 15
26361618 TGATGAATTT
26361628 ATTGAATTTATATTG
1 ATTGAATTTATATTG
26361643 ATTGAATTGGTATATAT-
1 ATTGAATT--TATAT-TG
*
26361660 ATTGAATATATATTG
1 ATTGAATTTATATTG
26361675 AT
1 AT
26361677 GATTTGAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
14 1 0.03
15 15 0.52
17 12 0.41
18 1 0.03
ACGTcount: A:0.37, C:0.00, G:0.14, T:0.49
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:26361930 original size:40 final size:40
Alignment explanation
Indices: 26361809--26361948 Score: 151
Period size: 40 Copynumber: 3.5 Consensus size: 40
26361799 GACTTCGATT
* *
26361809 CGATGAGACACTGGGTGTCAAATTATTATTTCGGATATATT
1 CGATGAGACACTGGGTGTCAAATTATTACTTCGGAT-TATC
* * * * * *
26361850 CGATGAGGCACTAGGTG-CCAA-T-TTACTTTGGTTTAGC
1 CGATGAGACACTGGGTGTCAAATTATTACTTCGGATTATC
*
26361887 CGATGAGACACTGGGTGTCAAATTATTACTTCGAATTATC
1 CGATGAGACACTGGGTGTCAAATTATTACTTCGGATTATC
* *
26361927 CGATGAGGCACTGGGTGCCAAA
1 CGATGAGACACTGGGTGTCAAA
26361949 CTGGTGTGTT
Statistics
Matches: 79, Mismatches: 17, Indels: 7
0.77 0.17 0.07
Matches are distributed among these distances:
37 17 0.22
38 11 0.14
39 2 0.03
40 34 0.43
41 15 0.19
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (40 bp):
CGATGAGACACTGGGTGTCAAATTATTACTTCGGATTATC
Found at i:26365198 original size:49 final size:49
Alignment explanation
Indices: 26365126--26365225 Score: 200
Period size: 49 Copynumber: 2.0 Consensus size: 49
26365116 AACCTCAACC
26365126 CTTTATCGTTTTCATTGCTAAAAGTAAAAAAGAAAATATTCTATTCCAA
1 CTTTATCGTTTTCATTGCTAAAAGTAAAAAAGAAAATATTCTATTCCAA
26365175 CTTTATCGTTTTCATTGCTAAAAGTAAAAAAGAAAATATTCTATTCCAA
1 CTTTATCGTTTTCATTGCTAAAAGTAAAAAAGAAAATATTCTATTCCAA
26365224 CT
1 CT
26365226 AGAAAATATC
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.40, C:0.15, G:0.08, T:0.37
Consensus pattern (49 bp):
CTTTATCGTTTTCATTGCTAAAAGTAAAAAAGAAAATATTCTATTCCAA
Found at i:26372972 original size:37 final size:37
Alignment explanation
Indices: 26372922--26372996 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
26372912 TGTTAGTCCC
26372922 TGTACTTTGACAAAATTTGAGATTTAGTCATTATACT
1 TGTACTTTGACAAAATTTGAGATTTAGTCATTATACT
26372959 TGTACTTTGACAAAATTTGAGATTTAGTCATTATACT
1 TGTACTTTGACAAAATTTGAGATTTAGTCATTATACT
26372996 T
1 T
26372997 AAAAAGTTAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.32, C:0.11, G:0.13, T:0.44
Consensus pattern (37 bp):
TGTACTTTGACAAAATTTGAGATTTAGTCATTATACT
Found at i:26390500 original size:249 final size:250
Alignment explanation
Indices: 26390028--26390559 Score: 867
Period size: 249 Copynumber: 2.1 Consensus size: 250
26390018 AACAAATAAG
* * * *
26390028 TCGCGCCCACGTGTATGCA-CTTTTGCTACAGTAGGTCCTGAAAAAATAATTTCGAGTTGACGTT
1 TCGCGCCCTCGTGGACGCATCTTTTGCTACAGTAGGTCCTGAAAAAATAATTTCGACTTGACGTT
* * *
26390092 TTTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTGTTTGATAAGAATTTGTGAAATCGCA
66 TTTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTATGAAATCGCA
* *
26390157 CCCTCATCGAGGCGCTTTTGCTACAGTAGGTCCTAGAAGAAATAATTTTGACTTGACGTTTCTGA
131 CCCTCATCGACGCGCTTTTGCTACAGTAGGTCCTAGAAGAAATAATTTCGACTTGACGTTTCTGA
26390222 GCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAA
196 GCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAA
* *
26390277 TCGTGCCCTCGTGGACGC-TCTTTTGCTACAGTAGGTCCTGGAAGAAATAATTTCGACTTGACGT
1 TCGCGCCCTCGTGGACGCATCTTTTGCTACAGTAGGTCCT-GAAAAAATAATTTCGACTTGACGT
26390341 TTTTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTATGAAATC-C
65 TTTTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTATGAAATCGC
* ** * *
26390405 TGCCCTTGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAA-AAATAATTTCGACTTGACGTTTCT
130 -ACCCTCATCGACGCGCTTTTGCTACAGTAGGTCCTAGAAGAAATAATTTCGACTTGACGTTTCT
26390469 GAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAA
194 GAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAA
26390526 TCGCGCCCTCGTGGACGCAT-TTTTGCTACAGTAG
1 TCGCGCCCTCGTGGACGCATCTTTTGCTACAGTAG
26390560 CATGTTTGGG
Statistics
Matches: 262, Mismatches: 17, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
249 146 0.56
250 116 0.44
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.31
Consensus pattern (250 bp):
TCGCGCCCTCGTGGACGCATCTTTTGCTACAGTAGGTCCTGAAAAAATAATTTCGACTTGACGTT
TTTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTATGAAATCGCA
CCCTCATCGACGCGCTTTTGCTACAGTAGGTCCTAGAAGAAATAATTTCGACTTGACGTTTCTGA
GCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAA
Found at i:26390525 original size:124 final size:125
Alignment explanation
Indices: 26390028--26390559 Score: 836
Period size: 125 Copynumber: 4.3 Consensus size: 125
26390018 AACAAATAAG
* * * * * *
26390028 TCGCGCCCACGTGTATGCACTTTTGCTACAGTAGGTCCT-GAAAAAATAATTTCGAGTTGACGTT
1 TCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAGAAATAATTTCGACTTGACGTT
* * *
26390092 TTTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTGTTTGATAAGAATTTGTGAAA
66 TCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAA
* * * * * *
26390152 TCGCACCCTCATCGAGGCGCTTTTGCTACAGTAGGTCCTAGAAGAAATAATTTTGACTTGACGTT
1 TCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAGAAATAATTTCGACTTGACGTT
26390217 TCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAA
66 TCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAA
* *
26390277 TCGTGCCCTCGTGGACGCTCTTTTGCTACAGTAGGTCCTGGAAGAAATAATTTCGACTTGACGTT
1 TCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAGAAATAATTTCGACTTGACGTT
* *
26390342 TTTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTATGAAA
66 TCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAA
*
26390402 TC-CTGCCCTTGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAA-AAATAATTTCGACTTGACGT
1 TCGC-GCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAGAAATAATTTCGACTTGACGT
26390465 TTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAA
65 TTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAA
**
26390526 TCGCGCCCTCGTGGACGCATTTTTGCTACAGTAG
1 TCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAG
26390560 CATGTTTGGG
Statistics
Matches: 374, Mismatches: 31, Indels: 6
0.91 0.08 0.01
Matches are distributed among these distances:
124 140 0.37
125 234 0.63
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.31
Consensus pattern (125 bp):
TCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAGAAATAATTTCGACTTGACGTT
TCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAA
Found at i:26394839 original size:27 final size:27
Alignment explanation
Indices: 26394809--26394868 Score: 69
Period size: 22 Copynumber: 2.4 Consensus size: 27
26394799 AGTGTTTTTA
26394809 AGTTTAGGGTTAGGGTTTTAAGTTAAG
1 AGTTTAGGGTTAGGGTTTTAAGTTAAG
*
26394836 AGTTTA----T-GGTTTTTAAGTTAAG
1 AGTTTAGGGTTAGGGTTTTAAGTTAAG
26394858 -GTTTAGGGTTA
1 AGTTTAGGGTTA
26394869 TTAAGTTAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 11
0.69 0.03 0.28
Matches are distributed among these distances:
21 5 0.19
22 14 0.52
23 1 0.04
25 1 0.04
27 6 0.22
ACGTcount: A:0.25, C:0.00, G:0.30, T:0.45
Consensus pattern (27 bp):
AGTTTAGGGTTAGGGTTTTAAGTTAAG
Found at i:26396074 original size:21 final size:21
Alignment explanation
Indices: 26393725--26396086 Score: 2767
Period size: 21 Copynumber: 112.2 Consensus size: 21
26393715 ACCTTAAGGC
26393725 TTTTAAGTTAAGGGTTTAGGGT
1 TTTTAAGTTAAGGG-TTAGGGT
* *
26393747 TTTTAAGTTAAGGTTTTAGAGT
1 TTTTAAGTTAAGG-GTTAGGGT
* *
26393769 TTTTAAGTTAAGAGTTAGAGT
1 TTTTAAGTTAAGGGTTAGGGT
26393790 TTTTAAGTTAAGGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
26393811 TTTTAAGTTAAGGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
*
26393832 TTTTAAGTTAAGGGTTTATGGT
1 TTTTAAGTTAAGGG-TTAGGGT
* *
26393854 TTTTAAGTTAAGGTTTAAGGT
1 TTTTAAGTTAAGGGTTAGGGT
* * *
26393875 TATTAAGTTAAAGTTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* *
26393896 TTTTAATTTAAAGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
26393917 TTTTAAGTTAAGGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* *
26393938 TTTTAAATTAAGGTTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* * **
26393959 TATTAAGTTAAGGTTTAGCAT
1 TTTTAAGTTAAGGGTTAGGGT
*
26393980 TTTTAATTTAAGGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
26394001 TTTTAAGTTAAGGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* *
26394022 TTTTAAGTTATGGGTTTATGGT
1 TTTTAAGTTAAGGG-TTAGGGT
* * *
26394044 CTTTAAGTTAAAGTTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
*
26394065 TTTTAAGTTGAGGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* ***
26394086 TTTTAATTTAAAATTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* *
26394107 TATTAAGTTAAGGTTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
26394128 TTTTAAGTTAAGGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
***
26394149 TTTTAAGTTAACAATTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
*
26394170 TTTTAAGTTAAGGGTTTATGGT
1 TTTTAAGTTAAGGG-TTAGGGT
*
26394192 TTTTAAGTTAAGGTTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* *
26394213 TATTAAGTTAAGGTTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* *
26394234 TTTTAATTTAAGGGTTAAGGT
1 TTTTAAGTTAAGGGTTAGGGT
*
26394255 TTTTAAGTTAAGGGTTATGGT
1 TTTTAAGTTAAGGGTTAGGGT
*
26394276 TTTTAAGTTAAGGGTTAGGAT
1 TTTTAAGTTAAGGGTTAGGGT
* *
26394297 TATTAAGTTAAGGTTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
26394318 TTTTAAGTGT-AGGGTTAGGGT
1 TTTTAAGT-TAAGGGTTAGGGT
**
26394339 TTTTAAGTTAAGGGTTTATTGT
1 TTTTAAGTTAAGGG-TTAGGGT
* *
26394361 TTTTAAGTTAAGGTTTAGGGC
1 TTTTAAGTTAAGGGTTAGGGT
* *
26394382 TATTAAGTTAAGGTTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* *
26394403 TTTTAATTTAAAGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
*
26394424 TTTTAAGTTAATGGTTTATGGG-
1 TTTTAAGTTAA-GGGTTA-GGGT
*
26394446 TTTTAAGTTAAGGGTTAGGAT
1 TTTTAAGTTAAGGGTTAGGGT
* * *
26394467 TTTTAATTTAATGGTTTATGGT
1 TTTTAAGTTAA-GGGTTAGGGT
**
26394489 TTTTAAGTTAAGGGTTATAGT
1 TTTTAAGTTAAGGGTTAGGGT
* *
26394510 TTTTAATTTAAGGTTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* *
26394531 TTTTAATTTAAGGGTTAGAGT
1 TTTTAAGTTAAGGGTTAGGGT
*
26394552 TTTTAAGTTAAGGGTTAGGAT
1 TTTTAAGTTAAGGGTTAGGGT
* *
26394573 TTTTAAGTTAAGGTTTATGGT
1 TTTTAAGTTAAGGGTTAGGGT
* *
26394594 TTTTAAGTTAAGGTTTACGGT
1 TTTTAAGTTAAGGGTTAGGGT
* *
26394615 TATTAAGTTAAGGGTTAGGGG
1 TTTTAAGTTAAGGGTTAGGGT
26394636 TTTTAAGTTAAGGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* * *
26394657 TTTTAATTTAATGTTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* ** *
26394678 TTTTAAGTGAAGATTTAAGGT
1 TTTTAAGTTAAGGGTTAGGGT
26394699 TTTTAAGTTAAGGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
*
26394720 TTTTAAGTTAAGGTTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* *
26394741 TTTTAATTTAAGGTTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* *
26394762 TATTAAGTTAAGGTTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* *
26394783 TTTTAATTTAAGGGTTAGTGT
1 TTTTAAGTTAAGGGTTAGGGT
*
26394804 TTTTAAGTTTAGGGTTAGGG-
1 TTTTAAGTTAAGGGTTAGGGT
* *
26394824 TTTTAAGTTAAGAGTTTATGGT
1 TTTTAAGTTAAG-GGTTAGGGT
*
26394846 TTTTAAGTTAAGGTTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* **
26394867 TATTAAGTTAAGATTTAGGG-
1 TTTTAAGTTAAGGGTTAGGGT
*
26394887 TTTTAATTTAAGGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
26394908 TTTTAAGTTAAGGGTTAGGG-
1 TTTTAAGTTAAGGGTTAGGGT
*
26394928 TTTTAAGTTAAGGTTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* *
26394949 TATTAAGTTAAGGTTTAGGG-
1 TTTTAAGTTAAGGGTTAGGGT
* * *
26394969 TTTTAATTTAAGTGTCAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
26394990 TTTTAAGTTAAGGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* *
26395011 TTTTAAGTTAAGGGCGTATGGT
1 TTTTAAGTTAAGGG-TTAGGGT
***
26395033 TTTTAAGTTAAACTTTAGGG-
1 TTTTAAGTTAAGGGTTAGGGT
***
26395053 TTTTAAGTTAAACTTTAGGG-
1 TTTTAAGTTAAGGGTTAGGGT
*
26395073 TTTTAAGTTAAGGGTTAAGGT
1 TTTTAAGTTAAGGGTTAGGGT
* *
26395094 TTTTAAGTTAAGGGTTTATGAT
1 TTTTAAGTTAAGGG-TTAGGGT
26395116 TTTTAAGTTAA-GGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* * **
26395136 TATGAAGTTAAGATTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
*
26395157 TTTTAATTTAAGGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
26395178 TTTTAAGTTAAGGGTT-GTGGT
1 TTTTAAGTTAAGGGTTAG-GGT
* * *
26395199 TTTTAATTTAACGTTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* *
26395220 TTTTAAGTTAA-GATATAGAGT
1 TTTTAAGTTAAGGGT-TAGGGT
*
26395241 TTTTAATTTAAGGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* *
26395262 TTTTAAGTTAAGAGTTTGGG-
1 TTTTAAGTTAAGGGTTAGGGT
* *
26395282 TTTTAAGTTAAGGGTTTGTGAT
1 TTTTAAGTTAAGGGTTAG-GGT
*
26395304 TTTTAAGTTAAGGTTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* *
26395325 TATTAAGTTAAGGGTTAAGGT
1 TTTTAAGTTAAGGGTTAGGGT
*
26395346 TTTTAATTTAAGGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* * *
26395367 TTTTAAGTTAAAAGTTTATGGT
1 TTTTAAGTT-AAGGGTTAGGGT
*
26395389 TTTTAAGTTAAGGTTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* * *
26395410 TTTTAGGTGAAGGTTTAGGG-
1 TTTTAAGTTAAGGGTTAGGGT
*
26395430 TTTTAATTTAAGGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
*
26395451 TTTTAAGTTAAGGGTTAGTGT
1 TTTTAAGTTAAGGGTTAGGGT
* *
26395472 TTTTAATTTAAGGTTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
*
26395493 TTTTAATTTAAGGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* *
26395514 TTTGAAGTTAAGGGTTAGGAT
1 TTTTAAGTTAAGGGTTAGGGT
* * *
26395535 TTTTAAGTTAATAGTTTATGGT
1 TTTTAAGTTAA-GGGTTAGGGT
* * * *
26395557 TTTTAAGTTATGGTTTACGAT
1 TTTTAAGTTAAGGGTTAGGGT
* *
26395578 TATTAAGTTAAGGTTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
*
26395599 TTTTAATTTAAGGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
26395620 TTTTAAGTTAAGGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
26395641 TTTTAAGTTAAGGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
*
26395662 TTTTAA-TTGAAGGTTTAGGGT
1 TTTTAAGTT-AAGGGTTAGGGT
* *
26395683 TATTAAGTTAAGGTTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
*
26395704 TTTTAATTTAAGGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
** *
26395725 TTTT-AGTGCAGGGTTAGGAT
1 TTTTAAGTTAAGGGTTAGGGT
*
26395745 TTTTAAGTTAAGGGTTTATGGT
1 TTTTAAGTTAAGGG-TTAGGGT
*
26395767 TTTTAAGTTAAGGTTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* * * *
26395788 TATTAAGTTAAGGTTTCGGAT
1 TTTTAAGTTAAGGGTTAGGGT
*
26395809 TTTTAATTTAAGGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
*
26395830 TTTTAAGTTAAGGTTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
*
26395851 TTTTAAGTTAAGGTTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* *
26395872 TATTAAGTTAAGGTTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* *
26395893 TTTTAATTTAAGGGTTAGAGT
1 TTTTAAGTTAAGGGTTAGGGT
*
26395914 TTTTAAGGTAAGGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* *
26395935 TTTTAAGTTACGGGTTTATGGT
1 TTTTAAGTTAAGGG-TTAGGGT
*
26395957 TTTTAAGTTAAGGTTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
*
26395978 TATTAAGTTAAGGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
*
26395999 TTTTAATTTAAGGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* *
26396020 TTTTAA-TTAAGTGTTAAGGT
1 TTTTAAGTTAAGGGTTAGGGT
26396040 TTTTAAGTTAAGGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
** *
26396061 TTTTTTGTTAAGGGTTGAAGGT
1 TTTTAAGTTAAGGGTT-AGGGT
26396083 TTTT
1 TTTT
26396087 GTCAATTAAA
Statistics
Matches: 2007, Mismatches: 297, Indels: 72
0.84 0.12 0.03
Matches are distributed among these distances:
20 186 0.09
21 1539 0.77
22 279 0.14
23 3 0.00
ACGTcount: A:0.26, C:0.01, G:0.28, T:0.46
Consensus pattern (21 bp):
TTTTAAGTTAAGGGTTAGGGT
Found at i:26397550 original size:20 final size:20
Alignment explanation
Indices: 26397513--26397550 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
26397503 TTTATTTTTA
*
26397513 AAAATCTACATAATAATTGT
1 AAAATCTACATAAAAATTGT
26397533 AAAATCTA-ATATAAAATT
1 AAAATCTACATA-AAAATT
26397551 TACCTCGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.34
Consensus pattern (20 bp):
AAAATCTACATAAAAATTGT
Found at i:26398458 original size:10 final size:10
Alignment explanation
Indices: 26398443--26398483 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
26398433 ATTTTTACGG
26398443 TTTAAAAAAA
1 TTTAAAAAAA
26398453 TTTAAAAAAAA
1 TTT-AAAAAAA
**
26398464 TTTAAAATTA
1 TTTAAAAAAA
26398474 TTTAAAAAAA
1 TTTAAAAAAA
26398484 GGGATTTAAG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
10 16 0.62
11 10 0.38
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (10 bp):
TTTAAAAAAA
Found at i:26398462 original size:11 final size:11
Alignment explanation
Indices: 26398446--26398483 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
26398436 TTTACGGTTT
26398446 AAAAAAATTTA
1 AAAAAAATTTA
26398457 AAAAAAATTT-
1 AAAAAAATTTA
**
26398467 AAAATTATTTA
1 AAAAAAATTTA
26398478 AAAAAA
1 AAAAAA
26398484 GGGATTTAAG
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
10 8 0.36
11 14 0.64
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (11 bp):
AAAAAAATTTA
Found at i:26398469 original size:21 final size:21
Alignment explanation
Indices: 26398443--26398483 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
26398433 ATTTTTACGG
26398443 TTTAAAAAAATTTAAAAAAAA
1 TTTAAAAAAATTTAAAAAAAA
**
26398464 TTTAAAATTATTTAAAAAAA
1 TTTAAAAAAATTTAAAAAAA
26398484 GGGATTTAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (21 bp):
TTTAAAAAAATTTAAAAAAAA
Found at i:26398563 original size:22 final size:22
Alignment explanation
Indices: 26398538--26398589 Score: 79
Period size: 22 Copynumber: 2.4 Consensus size: 22
26398528 TTAAATATGG
26398538 ATTTGAGAGAAAATTGGAAGG-A
1 ATTTGAGAGAAAATTGG-AGGAA
*
26398560 ATTTGAGAGGAAATTGGAGGAA
1 ATTTGAGAGAAAATTGGAGGAA
26398582 ATTTGAGA
1 ATTTGAGA
26398590 TAAGATTAGT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
21 3 0.11
22 25 0.89
ACGTcount: A:0.42, C:0.00, G:0.33, T:0.25
Consensus pattern (22 bp):
ATTTGAGAGAAAATTGGAGGAA
Found at i:26400532 original size:26 final size:26
Alignment explanation
Indices: 26400499--26400552 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
26400489 ACGCTACTTC
26400499 TAATAAACAAATTTTATTTTATATAA
1 TAATAAACAAATTTTATTTTATATAA
*
26400525 TAATAAACAAATTTTCTTTTATATAA
1 TAATAAACAAATTTTATTTTATATAA
26400551 TA
1 TA
26400553 TTAAGATTCG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.46
Consensus pattern (26 bp):
TAATAAACAAATTTTATTTTATATAA
Found at i:26400842 original size:20 final size:20
Alignment explanation
Indices: 26400819--26400861 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
26400809 TGTAAACTTG
* *
26400819 TAATAATTTATGTAATTGAA
1 TAATAATTTATATAATTAAA
*
26400839 TAATATTTTATATAATTAAA
1 TAATAATTTATATAATTAAA
26400859 TAA
1 TAA
26400862 GATATTGTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.47
Consensus pattern (20 bp):
TAATAATTTATATAATTAAA
Found at i:26409898 original size:14 final size:14
Alignment explanation
Indices: 26409862--26409895 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
26409852 TTTAAGTGAG
26409862 AAATTAATTTAGTT
1 AAATTAATTTAGTT
*
26409876 AATTTAATTTA-TT
1 AAATTAATTTAGTT
26409889 AAATTAA
1 AAATTAA
26409896 ATTAATAAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
13 8 0.44
14 10 0.56
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (14 bp):
AAATTAATTTAGTT
Found at i:26411905 original size:6 final size:6
Alignment explanation
Indices: 26411894--26411920 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
26411884 TTTCCAAAAC
26411894 TGGAAA TGGAAA TGGAAA TGGAAA TGG
1 TGGAAA TGGAAA TGGAAA TGGAAA TGG
26411921 TCCATTTGCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.44, C:0.00, G:0.37, T:0.19
Consensus pattern (6 bp):
TGGAAA
Found at i:26412137 original size:26 final size:27
Alignment explanation
Indices: 26412072--26412142 Score: 85
Period size: 27 Copynumber: 2.7 Consensus size: 27
26412062 TTTCTCGAAA
26412072 TTTTATCA-AGGGTAAAATCGTCAAAAT
1 TTTTAT-AGAGGGTAAAATCGTCAAAAT
* *
26412099 TTTTATTGAGGGTAAAATTGTCAAAA-
1 TTTTATAGAGGGTAAAATCGTCAAAAT
26412125 TTTTACTAG-GGGTAAAAT
1 TTTTA-TAGAGGGTAAAAT
26412143 AGGGATAAGA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
26 14 0.36
27 25 0.64
ACGTcount: A:0.38, C:0.07, G:0.18, T:0.37
Consensus pattern (27 bp):
TTTTATAGAGGGTAAAATCGTCAAAAT
Found at i:26412210 original size:14 final size:14
Alignment explanation
Indices: 26412191--26412219 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
26412181 TATTTTGGAA
26412191 ATTTTGGAAATTTT
1 ATTTTGGAAATTTT
26412205 ATTTTGGAAATTTT
1 ATTTTGGAAATTTT
26412219 A
1 A
26412220 AAAATTGAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (14 bp):
ATTTTGGAAATTTT
Found at i:26412224 original size:23 final size:23
Alignment explanation
Indices: 26412179--26412225 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
26412169 AATATTAAAG
**
26412179 TTTATTTTGGAAATTTTGGAAAT
1 TTTATTTTGGAAATTTTAAAAAT
26412202 TTTATTTTGGAAATTTTAAAAAT
1 TTTATTTTGGAAATTTTAAAAAT
26412225 T
1 T
26412226 GAGTCGGGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.53
Consensus pattern (23 bp):
TTTATTTTGGAAATTTTAAAAAT
Found at i:26421460 original size:45 final size:45
Alignment explanation
Indices: 26421411--26421622 Score: 244
Period size: 45 Copynumber: 4.7 Consensus size: 45
26421401 TACTAGAAAT
*
26421411 GAGTAAGATCATAGCTGAAAGACGTTATGGCATCACGATTCTATC
1 GAGTAAGACCATAGCTGAAAGACGTTATGGCATCACGATTCTATC
* * * *
26421456 GAGTAAGACCGTAGCTAAAAGACGTTATGGCATCACAATTCTATT
1 GAGTAAGACCATAGCTGAAAGACGTTATGGCATCACGATTCTATC
* * *
26421501 GAGCAAGACCATAGTTGAAAGACGTTATGGCATCATGATTCTATC
1 GAGTAAGACCATAGCTGAAAGACGTTATGGCATCACGATTCTATC
* * ** * * *
26421546 GAGTAAGACCATAGCTGAAGGATGCCATGGCATCACGAATCAAAC
1 GAGTAAGACCATAGCTGAAAGACGTTATGGCATCACGATTCTATC
* * * **
26421591 AAATAAGACCATAGTTGAAAGACACTATGGCA
1 GAGTAAGACCATAGCTGAAAGACGTTATGGCA
26421623 GCACAACGGA
Statistics
Matches: 138, Mismatches: 29, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 138 1.00
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.23
Consensus pattern (45 bp):
GAGTAAGACCATAGCTGAAAGACGTTATGGCATCACGATTCTATC
Found at i:26421649 original size:46 final size:45
Alignment explanation
Indices: 26421592--26421759 Score: 171
Period size: 46 Copynumber: 3.7 Consensus size: 45
26421582 GAATCAAACA
*
26421592 AATAAGACCATAGTTGAAAGACACTATGGCAGCACAACGGAAAATG
1 AATAAGACCATAGTTGAAAGACACTATGGCAACA-AACGGAAAATG
* * *
26421638 AATAAGACCATAGTTTAAAGAAACTATGGCAACATGGA-GGAAAATG
1 AATAAGACCATAGTTGAAAGACACTATGGCAACA--AACGGAAAATG
* * * * *
26421684 AATAAGACCATGGTTGAAAGACATTATGG-AATCAAGTC-GAGAATA
1 AATAAGACCATAGTTGAAAGACACTATGGCAA-CAA-ACGGAAAATG
* *
26421729 AATAAGACCATGGTTGAAAGACACCATGGCA
1 AATAAGACCATAGTTGAAAGACACTATGGCA
26421760 CCCTCCGATC
Statistics
Matches: 102, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
45 34 0.33
46 67 0.66
47 1 0.01
ACGTcount: A:0.45, C:0.14, G:0.22, T:0.18
Consensus pattern (45 bp):
AATAAGACCATAGTTGAAAGACACTATGGCAACAAACGGAAAATG
Found at i:26430267 original size:27 final size:27
Alignment explanation
Indices: 26429965--26430264 Score: 283
Period size: 27 Copynumber: 11.1 Consensus size: 27
26429955 AATGGGCCAC
*
26429965 AAATTACC-AAATACCC-CTATAGGGTA
1 AAATTACCAAAATACCCTCGA-AGGGTA
* *
26429991 AAATTA-TAGAAATGCCCTCGAAGGGTA
1 AAATTACCA-AAATACCCTCGAAGGGTA
* *
26430018 AAAATACCAAAATACCCTCAAAGGGTA
1 AAATTACCAAAATACCCTCGAAGGGTA
* *
26430045 AAATTACCGAAATAACCC-C-ATAGGGTG
1 AAATTACCAAAAT-ACCCTCGA-AGGGTA
* * * **
26430072 AAATTATCGAAATACCATTAAAGGGTA
1 AAATTACCAAAATACCCTCGAAGGGTA
*
26430099 AAATTACCGAAATACCCTCGAAGGGTA
1 AAATTACCAAAATACCCTCGAAGGGTA
26430126 AAATTACCAAAATACCCTCGAAGGGTA
1 AAATTACCAAAATACCCTCGAAGGGTA
**
26430153 AAATTATTAAAATACCCAT--ATAGGGTA
1 AAATTACCAAAATACCC-TCGA-AGGGTA
*
26430180 AAATTACTAAAATACCCTCGAAGGGTA
1 AAATTACCAAAATACCCTCGAAGGGTA
** *
26430207 AAAAGACCAAAATACCCTCGAAAGAG-A
1 AAATTACCAAAATACCCTCG-AAGGGTA
* * *
26430234 AAATGACCGAAATACCCCCGAAGGGTA
1 AAATTACCAAAATACCCTCGAAGGGTA
26430261 AAAT
1 AAAT
26430265 GACTGTTATA
Statistics
Matches: 230, Mismatches: 30, Indels: 27
0.80 0.10 0.09
Matches are distributed among these distances:
26 16 0.07
27 200 0.87
28 14 0.06
ACGTcount: A:0.46, C:0.19, G:0.16, T:0.19
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGAAGGGTA
Found at i:26430504 original size:26 final size:26
Alignment explanation
Indices: 26430449--26430525 Score: 91
Period size: 26 Copynumber: 3.0 Consensus size: 26
26430439 ACATATACTG
* * * *
26430449 TTACTGGCAGCTTTACTGCGTTACTG
1 TTACTGGCAGCTTTGCTGTGTTATTA
26430475 TTACTGGCAGCTTTGCTGTGTTATTA
1 TTACTGGCAGCTTTGCTGTGTTATTA
* * *
26430501 TTACTAGTAGCTTTGCTGTGATATT
1 TTACTGGCAGCTTTGCTGTGTTATT
26430526 GGTGTGTTGG
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.17, C:0.17, G:0.22, T:0.44
Consensus pattern (26 bp):
TTACTGGCAGCTTTGCTGTGTTATTA
Found at i:26432542 original size:41 final size:40
Alignment explanation
Indices: 26432492--26432614 Score: 131
Period size: 41 Copynumber: 3.0 Consensus size: 40
26432482 GTAATCACAT
* *
26432492 ATCGATGCCACTGTCCCAGATAGGGTCTTACACGAAACAA
1 ATCGATGCCACTGTCCCAGACATGGTCTTACACGAAACAA
* *
26432532 ATACGATGCCAATGTCCTAGACATGGTCTTACACGTAACACAA
1 AT-CGATGCCACTGTCCCAGACATGGTCTTACACG-AA-ACAA
* * *
26432575 GTCGGTGCTAAC-GTCCCAGACATGGTCTTACACGATAACA
1 ATCGATGC-CACTGTCCCAGACATGGTCTTACACGA-AACA
26432615 TATATCGGAA
Statistics
Matches: 69, Mismatches: 9, Indels: 9
0.79 0.10 0.10
Matches are distributed among these distances:
40 2 0.03
41 32 0.46
42 29 0.42
43 6 0.09
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.22
Consensus pattern (40 bp):
ATCGATGCCACTGTCCCAGACATGGTCTTACACGAAACAA
Found at i:26432602 original size:42 final size:43
Alignment explanation
Indices: 26432457--26432614 Score: 137
Period size: 42 Copynumber: 3.7 Consensus size: 43
26432447 CGTACAATGT
** * ** *
26432457 CAACGTCCTGGACGTGGTCTTACGTGTAATCACATAT-CGATGC
1 CAACGTCCCAGACATGGTCTTACACGTAA-CACAAATACGATGC
* *
26432500 C-ACTGTCCCAGATAGGGTCTTACACG-AA-ACAAATACGATGC
1 CAAC-GTCCCAGACATGGTCTTACACGTAACACAAATACGATGC
* * * *
26432541 CAATGTCCTAGACATGGTCTTACACGTAACACAAGT-CGGTGC
1 CAACGTCCCAGACATGGTCTTACACGTAACACAAATACGATGC
*
26432583 TAACGTCCCAGACATGGTCTTACACGATAACA
1 CAACGTCCCAGACATGGTCTTACACG-TAACA
26432615 TATATCGGAA
Statistics
Matches: 92, Mismatches: 17, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
40 5 0.05
41 26 0.28
42 35 0.38
43 26 0.28
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (43 bp):
CAACGTCCCAGACATGGTCTTACACGTAACACAAATACGATGC
Found at i:26440321 original size:27 final size:27
Alignment explanation
Indices: 26440283--26440798 Score: 369
Period size: 27 Copynumber: 19.1 Consensus size: 27
26440273 AATGGGCCAC
*
26440283 AAATTACCGAAATACCCCGATAGGGTT
1 AAATTACCGAAATACCCCGATAGGGTA
*
26440310 AAATTACCGAAATGCCCTCGA-AGGGTA
1 AAATTACCGAAATACCC-CGATAGGGTA
* * *** *
26440337 AAATTATCAAAATACCTTTAAAGGGTA
1 AAATTACCGAAATACCCCGATAGGGTA
* * *
26440364 AAATTACCGAAATAAACCC-ATTGGGTT
1 AAATTACCGAAAT-ACCCCGATAGGGTA
* **
26440391 AAATTATCGAAATA-CCCTTTAAGGGTA
1 AAATTACCGAAATACCCCGAT-AGGGTA
*
26440418 AAATTACCGAAATACCCTC-AAAGGGTA
1 AAATTACCGAAATACCC-CGATAGGGTA
* * *
26440445 AAATTACTGAAATACCCC-ATTGTGTA
1 AAATTACCGAAATACCCCGATAGGGTA
26440471 AAATTACCGAAATACCCTCGA-AGGGTA
1 AAATTACCGAAATACCC-CGATAGGGTA
*
26440498 AAATTATCGAAATACCCTCGA-AGGGTA
1 AAATTACCGAAATACCC-CGATAGGGTA
*
26440525 AAATTATCGAAATACCCTC-ATAGGGTA
1 AAATTACCGAAATACCC-CGATAGGGTA
* * * *
26440552 AAAATATCAAAATACTCTCGA-AGGGTA
1 AAATTACCGAAATAC-CCCGATAGGGTA
** *
26440579 AAATTACTAAAATACCCCAATAGGGTA
1 AAATTACCGAAATACCCCGATAGGGTA
* *
26440606 AAATTATC-AAAGTACACTCGA-AGGGTA
1 AAATTACCGAAA-TAC-CCCGATAGGGTA
** * * *
26440633 AAATTACTAAAATACCCCTATCGGGTT
1 AAATTACCGAAATACCCCGATAGGGTA
** *
26440660 AAATTATTGAAATACCCTGGA-AGGGTA
1 AAATTACCGAAATACCC-CGATAGGGTA
* * *
26440687 AAATTACCAAAATACCCTTGA-GGGGTA
1 AAATTACCGAAATACCC-CGATAGGGTA
* *
26440714 AAATTATCGAAATACCCCTATAGGGTA
1 AAATTACCGAAATACCCCGATAGGGTA
* *
26440741 AAATTATCAAAATACCCTCG-TAGGGTA
1 AAATTACCGAAATACCC-CGATAGGGTA
** **
26440768 AAAAGACAAAAATACCCCCGA-AGGGTA
1 AAATTACCGAAATA-CCCCGATAGGGTA
26440795 AAAT
1 AAAT
26440799 GACTATTATA
Statistics
Matches: 395, Mismatches: 72, Indels: 44
0.77 0.14 0.09
Matches are distributed among these distances:
25 3 0.01
26 36 0.09
27 334 0.85
28 21 0.05
29 1 0.00
ACGTcount: A:0.42, C:0.18, G:0.16, T:0.23
Consensus pattern (27 bp):
AAATTACCGAAATACCCCGATAGGGTA
Found at i:26440368 original size:54 final size:54
Alignment explanation
Indices: 26440283--26440798 Score: 480
Period size: 54 Copynumber: 9.6 Consensus size: 54
26440273 AATGGGCCAC
* * *
26440283 AAATTACCGAAATACCC-CGATAGGGTTAAATTACCGAAATGCCCTCGAAGGGTA
1 AAATTATCGAAATACCCTCGA-AGGGTAAAATTACCGAAATACCCTCGAAGGGTA
* * ** * * *
26440337 AAATTATCAAAATACCTTTAAAGGGTAAAATTACCGAAATAAACC-C-ATTGGGTT
1 AAATTATCGAAATACCCTCGAAGGGTAAAATTACCGAAAT-ACCCTCGA-AGGGTA
** *
26440391 AAATTATCGAAATACCCTTTAAGGGTAAAATTACCGAAATACCCTCAAAGGGTA
1 AAATTATCGAAATACCCTCGAAGGGTAAAATTACCGAAATACCCTCGAAGGGTA
* *
26440445 AAATTA-CTGAAATACCC-C-ATTGTGTAAAATTACCGAAATACCCTCGAAGGGTA
1 AAATTATC-GAAATACCCTCGA-AGGGTAAAATTACCGAAATACCCTCGAAGGGTA
*
26440498 AAATTATCGAAATACCCTCGAAGGGTAAAATTATCGAAATACCCTC-ATAGGGTA
1 AAATTATCGAAATACCCTCGAAGGGTAAAATTACCGAAATACCCTCGA-AGGGTA
* * * ** *
26440552 AAAATATCAAAATACTCTCGAAGGGTAAAATTACTAAAATACCC-CAATAGGGTA
1 AAATTATCGAAATACCCTCGAAGGGTAAAATTACCGAAATACCCTCGA-AGGGTA
* ** * * *
26440606 AAATTATC-AAAGTACACTCGAAGGGTAAAATTACTAAAATACCC-CTATCGGGTT
1 AAATTATCGAAA-TACCCTCGAAGGGTAAAATTACCGAAATACCCTCGA-AGGGTA
* * * * *
26440660 AAATTATTGAAATACCCTGGAAGGGTAAAATTACCAAAATACCCTTGAGGGGTA
1 AAATTATCGAAATACCCTCGAAGGGTAAAATTACCGAAATACCCTCGAAGGGTA
* * * *
26440714 AAATTATCGAAATACCC-CTATAGGGTAAAATTATCAAAATACCCTCGTAGGGTA
1 AAATTATCGAAATACCCTCGA-AGGGTAAAATTACCGAAATACCCTCGAAGGGTA
** * *
26440768 AAAAGA-CAAAAATACCCCCGAAGGGTAAAAT
1 AAATTATC-GAAATACCCTCGAAGGGTAAAAT
26440799 GACTATTATA
Statistics
Matches: 391, Mismatches: 53, Indels: 36
0.81 0.11 0.08
Matches are distributed among these distances:
52 1 0.00
53 57 0.15
54 322 0.82
55 11 0.03
ACGTcount: A:0.42, C:0.18, G:0.16, T:0.23
Consensus pattern (54 bp):
AAATTATCGAAATACCCTCGAAGGGTAAAATTACCGAAATACCCTCGAAGGGTA
Found at i:26440418 original size:81 final size:80
Alignment explanation
Indices: 26440283--26440770 Score: 452
Period size: 81 Copynumber: 6.0 Consensus size: 80
26440273 AATGGGCCAC
* * * *
26440283 AAATTACCGAAATACCCCGATAGGGTTAAATTACCGAAATGCCCTCGAAGGGTAAAATTATCAAA
1 AAATTACCGAAATAACCC-ATAGGGTAAAATTATCGAAATACCCTCGAAGGGTAAAATTATCAAA
* *
26440348 ATACCTTTAAAGGGTA
65 ATACCCTCAAAGGGTA
* * ** * *
26440364 AAATTACCGAAATAAACCCATTGGGTTAAATTATCGAAATACCCTTTAAGGGTAAAATTACCGAA
1 AAATTACCGAAAT-AACCCATAGGGTAAAATTATCGAAATACCCTCGAAGGGTAAAATTATCAAA
26440429 ATACCCTCAAAGGGTA
65 ATACCCTCAAAGGGTA
* * * * * *
26440445 AAATTACTGAAATACCCCATTGTGTAAAATTACCGAAATACCCTCGAAGGGTAAAATTATCGAAA
1 AAATTACCGAAATAACCCATAGGGTAAAATTATCGAAATACCCTCGAAGGGTAAAATTATCAAAA
*
26440510 TACCCTCGAAGGGTA
66 TACCCTCAAAGGGTA
* * * * *
26440525 AAATTATCGAAATACCCTCATAGGGTAAAAATATCAAAATACTCTCGAAGGGTAAAATTA-CTAA
1 AAATTACCGAAATAACC-CATAGGGTAAAATTATCGAAATACCCTCGAAGGGTAAAATTATC-AA
26440589 AATACCC-CAATAGGGTA
64 AATACCCTCAA-AGGGTA
* * * * * *
26440606 AAATTATC-AAAGTACACTCGA-AGGGTAAAATTA-CTAAAATACCC-CTATCGGGTTAAATTAT
1 AAATTACCGAAA-TA-AC-CCATAGGGTAAAATTATC-GAAATACCCTCGA-AGGGTAAAATTAT
** **
26440667 TGAAATACCCTGGAAGGGTA
61 CAAAATACCCTCAAAGGGTA
* * *
26440687 AAATTACCAAAAT-ACCCTTGAGGGGTAAAATTATCGAAATACCC-CTATAGGGTAAAATTATCA
1 AAATTACCGAAATAACCCAT-A-GGGTAAAATTATCGAAATACCCTCGA-AGGGTAAAATTATCA
**
26440750 AAATACCCTCGTAGGGTA
63 AAATACCCTCAAAGGGTA
26440768 AAA
1 AAA
26440771 AGACAAAAAT
Statistics
Matches: 341, Mismatches: 50, Indels: 32
0.81 0.12 0.08
Matches are distributed among these distances:
78 1 0.00
79 2 0.01
80 84 0.25
81 242 0.71
82 11 0.03
83 1 0.00
ACGTcount: A:0.42, C:0.18, G:0.16, T:0.24
Consensus pattern (80 bp):
AAATTACCGAAATAACCCATAGGGTAAAATTATCGAAATACCCTCGAAGGGTAAAATTATCAAAA
TACCCTCAAAGGGTA
Found at i:26440991 original size:27 final size:26
Alignment explanation
Indices: 26440959--26441052 Score: 89
Period size: 26 Copynumber: 3.6 Consensus size: 26
26440949 AAGTATACTG
* *
26440959 TACTGGTGGCTTTGCCATATATACTAT
1 TACTGGTAGCTTTGCCACAT-TACTAT
* * * *
26440986 TACTGGCAGCTTTGCTACGTTACTGT
1 TACTGGTAGCTTTGCCACATTACTAT
** *
26441012 TACTGGTAGCTTTGCTGCATTATTAT
1 TACTGGTAGCTTTGCCACATTACTAT
*
26441038 TACTGGCAGCTTTGC
1 TACTGGTAGCTTTGC
26441053 TGCGATATTA
Statistics
Matches: 55, Mismatches: 12, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
26 40 0.73
27 15 0.27
ACGTcount: A:0.18, C:0.20, G:0.21, T:0.40
Consensus pattern (26 bp):
TACTGGTAGCTTTGCCACATTACTAT
Found at i:26441042 original size:52 final size:51
Alignment explanation
Indices: 26440954--26441053 Score: 141
Period size: 52 Copynumber: 1.9 Consensus size: 51
26440944 AGGGGAAGTA
*
26440954 TACTGTACTGGTGGCTTTGCCATATATACTATTACTGGCAGCTTTGCTACGT
1 TACTGTACTGGTAGCTTTGCCATATATA-TATTACTGGCAGCTTTGCTACGT
26441006 TACTGTTACTGGTAGCTTTGCTGCAT-TAT-TATTACTGGCAGCTTTGCT
1 TACTG-TACTGGTAGCTTTGC--CATATATATATTACTGGCAGCTTTGCT
26441054 GCGATATTAG
Statistics
Matches: 44, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
52 24 0.55
53 14 0.32
54 3 0.07
55 3 0.07
ACGTcount: A:0.18, C:0.20, G:0.21, T:0.41
Consensus pattern (51 bp):
TACTGTACTGGTAGCTTTGCCATATATATATTACTGGCAGCTTTGCTACGT
Found at i:26441054 original size:26 final size:26
Alignment explanation
Indices: 26440980--26441055 Score: 107
Period size: 26 Copynumber: 2.9 Consensus size: 26
26440970 TTGCCATATA
* *
26440980 TACTATTACTGGCAGCTTTGCTACGT
1 TACTATTACTGGCAGCTTTGCTGCAT
* *
26441006 TACTGTTACTGGTAGCTTTGCTGCAT
1 TACTATTACTGGCAGCTTTGCTGCAT
*
26441032 TATTATTACTGGCAGCTTTGCTGC
1 TACTATTACTGGCAGCTTTGCTGC
26441056 GATATTAGTG
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.17, C:0.21, G:0.21, T:0.41
Consensus pattern (26 bp):
TACTATTACTGGCAGCTTTGCTGCAT
Found at i:26441207 original size:28 final size:28
Alignment explanation
Indices: 26441167--26441227 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 28
26441157 ATTGTACTAA
* * *
26441167 TTACTGTATTGGGTTAAAGCCCACACTG
1 TTACTATAATGGGATAAAGCCCACACTG
*
26441195 TTACTATAATGGGATAAGGCCCACACTG
1 TTACTATAATGGGATAAAGCCCACACTG
26441223 -TACTA
1 TTACTA
26441228 ATACTGTATA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
27 5 0.17
28 24 0.83
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.30
Consensus pattern (28 bp):
TTACTATAATGGGATAAAGCCCACACTG
Found at i:26444047 original size:45 final size:45
Alignment explanation
Indices: 26443945--26444071 Score: 141
Period size: 45 Copynumber: 2.8 Consensus size: 45
26443935 TTTCTTGAAG
* * * * * *
26443945 GAAATGATTAAGACCATAG-TAGAAAGACACTACGACACTATATCG
1 GAAATGAATAAGACCATAGCT-GAAAGACACTATGGCACCATACCA
*
26443990 GAAATAAATAAGACCATAGCTGAAAGACACTATGGCACCATACCA
1 GAAATGAATAAGACCATAGCTGAAAGACACTATGGCACCATACCA
* *
26444035 TAAATGAGTAAGACCATAGCTGAAAGACGA-TATGGCA
1 GAAATGAATAAGACCATAGCTGAAAGAC-ACTATGGCA
26444072 TCATGATTCT
Statistics
Matches: 70, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
45 68 0.97
46 2 0.03
ACGTcount: A:0.45, C:0.18, G:0.19, T:0.18
Consensus pattern (45 bp):
GAAATGAATAAGACCATAGCTGAAAGACACTATGGCACCATACCA
Found at i:26444160 original size:46 final size:46
Alignment explanation
Indices: 26443998--26444204 Score: 181
Period size: 45 Copynumber: 4.6 Consensus size: 46
26443988 CGGAAATAAA
* * * **
26443998 TAAGACCATAGCTGAAAGACACTATGGCACCATACCA-TAAAT-GAG
1 TAAGACCATAGCTGAAAGACACTATGGCATCACA-AATTCTATCGAG
**
26444043 TAAGACCATAGCTGAAAGACGA-TATGGCATCA-TGATTCTATCGAG
1 TAAGACCATAGCTGAAAGAC-ACTATGGCATCACAAATTCTATCGAG
* * *** * *
26444088 TAAAACTATAGCTGAAAGATGTTATGGAATCACAAATTCTATTGAG
1 TAAGACCATAGCTGAAAGACACTATGGCATCACAAATTCTATCGAG
* * * * *
26444134 TAAGACCATAACTGAAAGACACTATGGCATCACGAA-TCAAACGAA
1 TAAGACCATAGCTGAAAGACACTATGGCATCACAAATTCTATCGAG
*
26444179 TAAGACCATAGTTGAAAGACACTATG
1 TAAGACCATAGCTGAAAGACACTATG
26444205 ATAATACGAC
Statistics
Matches: 130, Mismatches: 27, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
43 1 0.01
44 3 0.02
45 87 0.67
46 39 0.30
ACGTcount: A:0.42, C:0.18, G:0.18, T:0.22
Consensus pattern (46 bp):
TAAGACCATAGCTGAAAGACACTATGGCATCACAAATTCTATCGAG
Found at i:26444267 original size:46 final size:45
Alignment explanation
Indices: 26444134--26444299 Score: 170
Period size: 46 Copynumber: 3.6 Consensus size: 45
26444124 TTCTATTGAG
* * ** *
26444134 TAAGACCATAACTGAAAGACACTATGGCATCACGAATCAAACGAA
1 TAAGACCATAATTGAAAGACACTATGGCAACACGAAGAAAATGAA
* ** *
26444179 TAAGACCATAGTTGAAAGACACTATGATAATACGACAGAAAATGAA
1 TAAGACCATAATTGAAAGACACTATGGCAACACGA-AGAAAATGAA
* * *
26444225 TAAAACCATAATTGAAAGACACTATGGCAACATGATGAAAAATGAA
1 TAAGACCATAATTGAAAGACACTATGGCAACACGAAG-AAAATGAA
** * *
26444271 TAAGACCATGGTTGAAAAAAACTATGGCA
1 TAAGACCATAATTGAAAGACACTATGGCA
26444300 TCAAGTCCCG
Statistics
Matches: 98, Mismatches: 21, Indels: 3
0.80 0.17 0.02
Matches are distributed among these distances:
45 30 0.31
46 68 0.69
ACGTcount: A:0.49, C:0.16, G:0.17, T:0.19
Consensus pattern (45 bp):
TAAGACCATAATTGAAAGACACTATGGCAACACGAAGAAAATGAA
Found at i:26457600 original size:15 final size:14
Alignment explanation
Indices: 26457573--26457632 Score: 50
Period size: 15 Copynumber: 4.1 Consensus size: 14
26457563 CACGATCAAC
*
26457573 AAAAATTAAAAGAA
1 AAAAATGAAAAGAA
26457587 AAAAATGAAGAAGAA
1 AAAAATGAA-AAGAA
* *
26457602 AAAGAAGGAAAGGAA
1 AAA-AATGAAAAGAA
26457617 CAAAGAA-GAAAAGAA
1 -AAA-AATGAAAAGAA
26457632 A
1 A
26457633 CTAAAGAAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
14 9 0.23
15 19 0.49
16 11 0.28
ACGTcount: A:0.73, C:0.02, G:0.20, T:0.05
Consensus pattern (14 bp):
AAAAATGAAAAGAA
Found at i:26457621 original size:16 final size:17
Alignment explanation
Indices: 26457602--26457644 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
26457592 TGAAGAAGAA
* *
26457602 AAAGAAGGAAAGGAAC-
1 AAAGAAGAAAAGAAACT
26457618 AAAGAAGAAAAGAAACT
1 AAAGAAGAAAAGAAACT
26457635 AAAGAA-AAAA
1 AAAGAAGAAAA
26457645 ATTATAAAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 18 0.75
17 6 0.25
ACGTcount: A:0.72, C:0.05, G:0.21, T:0.02
Consensus pattern (17 bp):
AAAGAAGAAAAGAAACT
Found at i:26463663 original size:42 final size:42
Alignment explanation
Indices: 26463586--26463689 Score: 120
Period size: 42 Copynumber: 2.5 Consensus size: 42
26463576 ATGCCACATG
* *
26463586 GCCTGGACACACGCCCATGTCCTTGTCCATATGACTCACACA
1 GCCTGGACACATGCCCATGTCCTTGACCATATGACTCACACA
* * **
26463628 GCCTGGACACATGCCCATGTCCTT-ACCTGTGTGACTCACATG
1 GCCTGGACACATGCCCATGTCCTTGACC-ATATGACTCACACA
* *
26463670 GCATGGGCACATGCCCATGT
1 GCCTGGACACATGCCCATGT
26463690 GTTCTGCCTA
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
41 2 0.04
42 51 0.96
ACGTcount: A:0.21, C:0.35, G:0.21, T:0.23
Consensus pattern (42 bp):
GCCTGGACACATGCCCATGTCCTTGACCATATGACTCACACA
Found at i:26468888 original size:44 final size:44
Alignment explanation
Indices: 26468838--26468934 Score: 178
Period size: 44 Copynumber: 2.2 Consensus size: 44
26468828 TGTATACAAG
26468838 CTATCTTATTAAGAAGAATTTCTCTAAACATTCATTTATTAAAA
1 CTATCTTATTAAGAAGAATTTCTCTAAACATTCATTTATTAAAA
26468882 CTATCTTATTAAGAAGAATTTCTCTAAACATTCATTTATTAAAA
1 CTATCTTATTAAGAAGAATTTCTCTAAACATTCATTTATTAAAA
26468926 C-ATACTTAT
1 CTAT-CTTAT
26468935 GAAAAAAATG
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
43 2 0.04
44 50 0.96
ACGTcount: A:0.40, C:0.14, G:0.04, T:0.41
Consensus pattern (44 bp):
CTATCTTATTAAGAAGAATTTCTCTAAACATTCATTTATTAAAA
Found at i:26469527 original size:53 final size:53
Alignment explanation
Indices: 26469447--26469557 Score: 195
Period size: 53 Copynumber: 2.1 Consensus size: 53
26469437 TATTTTGAAT
* *
26469447 TGAATCATCTCTAATTTTTGCATATTTCTAATAAGTTTGTTGCTAATTGTGCA
1 TGAATCATCTCTAATTTTTGCATATTTCCAATAAGTTCGTTGCTAATTGTGCA
*
26469500 TGAATCATCTCTAATTTTTGCATATTTCCAGTAAGTTCGTTGCTAATTGTGCA
1 TGAATCATCTCTAATTTTTGCATATTTCCAATAAGTTCGTTGCTAATTGTGCA
26469553 TGAAT
1 TGAAT
26469558 TTTCACATAT
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
53 55 1.00
ACGTcount: A:0.26, C:0.14, G:0.14, T:0.45
Consensus pattern (53 bp):
TGAATCATCTCTAATTTTTGCATATTTCCAATAAGTTCGTTGCTAATTGTGCA
Found at i:26480457 original size:16 final size:17
Alignment explanation
Indices: 26480426--26480458 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
26480416 TATAAAAATT
26480426 AAATTAAAAACAAATAA
1 AAATTAAAAACAAATAA
26480443 AAATTAAAAA-AAATAA
1 AAATTAAAAACAAATAA
26480459 TGGCTAAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (17 bp):
AAATTAAAAACAAATAA
Found at i:26481574 original size:14 final size:12
Alignment explanation
Indices: 26481545--26481576 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
26481535 GTCACATGGT
26481545 TGTGTGGCAGCC
1 TGTGTGGCAGCC
*
26481557 TGTGTGGCAGTC
1 TGTGTGGCAGCC
26481569 TGTGTGGC
1 TGTGTGGC
26481577 TCACACGGCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.06, C:0.19, G:0.44, T:0.31
Consensus pattern (12 bp):
TGTGTGGCAGCC
Found at i:26486598 original size:3 final size:3
Alignment explanation
Indices: 26486590--26486629 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
26486580 GAAGGGAATA
26486590 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
26486630 TGATGATGAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.68, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:26486634 original size:3 final size:3
Alignment explanation
Indices: 26486628--26486653 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
26486618 AGAAGAAGAA
26486628 GAT GAT GAT GAT GAT GAT GAT GAT GA
1 GAT GAT GAT GAT GAT GAT GAT GAT GA
26486654 CCCTGCAGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.35, T:0.31
Consensus pattern (3 bp):
GAT
Found at i:26490802 original size:14 final size:13
Alignment explanation
Indices: 26490766--26490819 Score: 54
Period size: 13 Copynumber: 4.1 Consensus size: 13
26490756 TAAGATGAAT
*
26490766 TAAAATAAATAAA
1 TAAAAGAAATAAA
26490779 TAAAAGAAATAAA
1 TAAAAGAAATAAA
*
26490792 TAATGAGAAATAAA
1 TAA-AAGAAATAAA
* * *
26490806 CAAATGAACTAAA
1 TAAAAGAAATAAA
26490819 T
1 T
26490820 CGATAAACCT
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
13 22 0.67
14 11 0.33
ACGTcount: A:0.69, C:0.04, G:0.07, T:0.20
Consensus pattern (13 bp):
TAAAAGAAATAAA
Found at i:26493533 original size:19 final size:18
Alignment explanation
Indices: 26493494--26493538 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
26493484 TTTAAAATTT
26493494 TTAAATTTTAATTAAATAA
1 TTAAATTTTAA-TAAATAA
26493513 TTAAATTTTAA-AAATGGAA
1 TTAAATTTTAATAAAT--AA
26493532 TTAAATT
1 TTAAATT
26493539 AATTAGTCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 4 0.17
19 20 0.83
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.44
Consensus pattern (18 bp):
TTAAATTTTAATAAATAA
Found at i:26497465 original size:27 final size:26
Alignment explanation
Indices: 26497435--26497843 Score: 413
Period size: 27 Copynumber: 15.2 Consensus size: 26
26497425 TTACACTATT
* *
26497435 ATGACCAAAATACTTCCATAGGGTAAA
1 ATGACCGAAATAC-CCCATAGGGTAAA
* * *
26497462 ATGACCAAAATACCCCCATAAGGTAGA
1 ATGACCGAAATA-CCCCATAGGGTAAA
*
26497489 ATGATCGAAATACCTCCATAGGGTAAA
1 ATGACCGAAATACC-CCATAGGGTAAA
* * *
26497516 ATGACCAAAACACCCCCATATGGTAAA
1 ATGACCGAAATA-CCCCATAGGGTAAA
*
26497543 ATGATCGAAATACCCTCATAGGGTAAA
1 ATGACCGAAATACCC-CATAGGGTAAA
* *
26497570 ATGACCAAAATACCCCCATAGGATAAA
1 ATGACCGAAATA-CCCCATAGGGTAAA
*
26497597 ATGACCGGAATACCCCTATAGGGTAAA
1 ATGACCGAAATACCCC-ATAGGGTAAA
* *
26497624 ATGATCGAAATACCCTCATAGGGTAGA
1 ATGACCGAAATACCC-CATAGGGTAAA
* *
26497651 ATAACCGAAATACCCCCATAGGCTAAA
1 ATGACCGAAATA-CCCCATAGGGTAAA
* *
26497678 ATAACCAAAATACCCCTATAGGGTAAA
1 ATGACCGAAATACCCC-ATAGGGTAAA
* *
26497705 ATGACCAAAATACCCTCATAGGATAAA
1 ATGACCGAAATACCC-CATAGGGTAAA
* *
26497732 ATGACTGGAATACCCCTATAGGGTAAA
1 ATGACCGAAATACCCC-ATAGGGTAAA
* *
26497759 ATGACCGGAATACCCTCATAGGGTAGA
1 ATGACCGAAATACCC-CATAGGGTAAA
* * * * *
26497786 ATAACTGAAATACTCCGTAGGCTAAA
1 ATGACCGAAATACCCCATAGGGTAAA
*
26497812 ATGATCGAAATACCCCCATAGGGTAAA
1 ATGACCGAAATA-CCCCATAGGGTAAA
26497839 ATGAC
1 ATGAC
26497844 TATTATACCT
Statistics
Matches: 317, Mismatches: 52, Indels: 26
0.80 0.13 0.07
Matches are distributed among these distances:
26 31 0.10
27 274 0.86
28 12 0.04
ACGTcount: A:0.42, C:0.22, G:0.17, T:0.19
Consensus pattern (26 bp):
ATGACCGAAATACCCCATAGGGTAAA
Found at i:26497573 original size:81 final size:81
Alignment explanation
Indices: 26497435--26497843 Score: 478
Period size: 81 Copynumber: 5.1 Consensus size: 81
26497425 TTACACTATT
** * * * * *
26497435 ATGACCAAAATACTTCCATAGGGTAAAATGACCAAAATACCCCCATAAGGTAGAATGATCGAAAT
1 ATGACCAAAATACCCCCATAGGGTAAAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAAT
*
26497500 ACCTCCATAGGGTAAA
66 ACCCCCATAGGGTAAA
* * * *
26497516 ATGACCAAAACACCCCCATATGGTAAAATGATCGAAATACCCTCATAGGGTAAAATGACCAAAAT
1 ATGACCAAAATACCCCCATAGGGTAAAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAAT
*
26497581 ACCCCCATAGGATAAA
66 ACCCCCATAGGGTAAA
** * * * *
26497597 ATGACCGGAATACCCCTATAGGGTAAAATGATCGAAATACCCTCATAGGGTAGAATAACCGAAAT
1 ATGACCAAAATACCCCCATAGGGTAAAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAAT
*
26497662 ACCCCCATAGGCTAAA
66 ACCCCCATAGGGTAAA
* * * * * *
26497678 ATAACCAAAATACCCCTATAGGGTAAAATGACCAAAATACCCTCATAGGATAAAATGACTGGAAT
1 ATGACCAAAATACCCCCATAGGGTAAAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAAT
*
26497743 ACCCCTATAGGGTAAA
66 ACCCCCATAGGGTAAA
** * * * * * * * *
26497759 ATGACCGGAATACCCTCATAGGGTAGAATAACTGAAATACTC-CGTAGGCTAAAATGATCGAAAT
1 ATGACCAAAATACCCCCATAGGGTAAAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAAT
26497823 ACCCCCATAGGGTAAA
66 ACCCCCATAGGGTAAA
26497839 ATGAC
1 ATGAC
26497844 TATTATACCT
Statistics
Matches: 278, Mismatches: 50, Indels: 1
0.84 0.15 0.00
Matches are distributed among these distances:
80 37 0.13
81 241 0.87
ACGTcount: A:0.42, C:0.22, G:0.17, T:0.19
Consensus pattern (81 bp):
ATGACCAAAATACCCCCATAGGGTAAAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAAT
ACCCCCATAGGGTAAA
Found at i:26504165 original size:15 final size:15
Alignment explanation
Indices: 26504145--26504175 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
26504135 TTTCTTCAGA
26504145 TTTATTTAACTATTT
1 TTTATTTAACTATTT
*
26504160 TTTATTTAATTATTT
1 TTTATTTAACTATTT
26504175 T
1 T
26504176 CAGCTTTTAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (15 bp):
TTTATTTAACTATTT
Found at i:26524000 original size:24 final size:24
Alignment explanation
Indices: 26523955--26524001 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
26523945 AAATTTCAAT
* *
26523955 TTTATTTAATTATTTAATTTTTAA
1 TTTATTGAATTATTAAATTTTTAA
26523979 TTTATTGAATTA-TAAATATTTTA
1 TTTATTGAATTATTAAAT-TTTTA
26524002 TACTAATTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (24 bp):
TTTATTGAATTATTAAATTTTTAA
Found at i:26525689 original size:50 final size:50
Alignment explanation
Indices: 26525626--26525757 Score: 156
Period size: 50 Copynumber: 2.6 Consensus size: 50
26525616 TTATTAGATA
* * *
26525626 TCCCACGTAAGACCATGTCTGGGACATTGCGTTGGCACCGAGATGAGAGG
1 TCCCACGTAAGACCATGTCTGGGACATGGCATAGGCACCGAGATGAGAGG
* * **
26525676 TCCCCCGTAAGACCATGTCTGGGACATGGCATAGGCACCGATATGAGAAC
1 TCCCACGTAAGACCATGTCTGGGACATGGCATAGGCACCGAGATGAGAGG
* ** * *
26525726 TCTCATATAAGACCATATCTGGGATATGGCAT
1 TCCCACGTAAGACCATGTCTGGGACATGGCAT
26525758 TTTCAATATA
Statistics
Matches: 69, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
50 69 1.00
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (50 bp):
TCCCACGTAAGACCATGTCTGGGACATGGCATAGGCACCGAGATGAGAGG
Found at i:26530036 original size:21 final size:21
Alignment explanation
Indices: 26530007--26530048 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
26529997 TATTAATTCA
26530007 TAATATAA-TTAATTTTAATTT
1 TAATATAATTTAA-TTTAATTT
*
26530028 TAATCTAATTTAATTTAATTT
1 TAATATAATTTAATTTAATTT
26530049 AATTTGGGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.57
Consensus pattern (21 bp):
TAATATAATTTAATTTAATTT
Found at i:26530041 original size:5 final size:5
Alignment explanation
Indices: 26530015--26530053 Score: 51
Period size: 5 Copynumber: 7.4 Consensus size: 5
26530005 CATAATATAA
*
26530015 TTAATT TTAATT TTAAT CTAAT TTAAT TTAAT TTAAT TT
1 TTAA-T TTAA-T TTAAT TTAAT TTAAT TTAAT TTAAT TT
26530054 GGGTTAAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
5 21 0.68
6 10 0.32
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (5 bp):
TTAAT
Found at i:26531943 original size:31 final size:32
Alignment explanation
Indices: 26531894--26531956 Score: 119
Period size: 31 Copynumber: 2.0 Consensus size: 32
26531884 TAAGGATGAA
26531894 ATTTTGTTAAGGGGGGAGAGTTGTAATACCTC
1 ATTTTGTTAAGGGGGGAGAGTTGTAATACCTC
26531926 ATTTTGTTAA-GGGGGAGAGTTGTAATACCTC
1 ATTTTGTTAAGGGGGGAGAGTTGTAATACCTC
26531957 GGTTTCGGTG
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 21 0.68
32 10 0.32
ACGTcount: A:0.25, C:0.10, G:0.30, T:0.35
Consensus pattern (32 bp):
ATTTTGTTAAGGGGGGAGAGTTGTAATACCTC
Found at i:26533223 original size:27 final size:27
Alignment explanation
Indices: 26533193--26533363 Score: 148
Period size: 27 Copynumber: 6.3 Consensus size: 27
26533183 TGTCAGGAAT
26533193 GGAACGCCTTTGTGGTG-AATTATGAAA
1 GGAACGCCTTTGTGGTGCAA-TATGAAA
* *
26533220 GGAACACCTTTGTGGTGTAATATGAAA
1 GGAACGCCTTTGTGGTGCAATATGAAA
* * *
26533247 GGAAAGCCTTTATGGCGCAATATGAAA
1 GGAACGCCTTTGTGGTGCAATATGAAA
* * * * *
26533274 GAAATGTCGTTGTGGTG-AATTATAAAA
1 GGAACGCCTTTGTGGTGCAA-TATGAAA
* * *
26533301 GGAACGTCTTTATGGTGCAATATAAAA
1 GGAACGCCTTTGTGGTGCAATATGAAA
* * * *
26533328 GGAAAGCCTTTTTAGCGCAATATGAAA
1 GGAACGCCTTTGTGGTGCAATATGAAA
*
26533355 AGAACGCCT
1 GGAACGCCT
26533364 CTATGGAGAA
Statistics
Matches: 116, Mismatches: 25, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
26 2 0.02
27 110 0.95
28 4 0.03
ACGTcount: A:0.35, C:0.12, G:0.25, T:0.27
Consensus pattern (27 bp):
GGAACGCCTTTGTGGTGCAATATGAAA
Found at i:26533337 original size:81 final size:81
Alignment explanation
Indices: 26533202--26533354 Score: 234
Period size: 81 Copynumber: 1.9 Consensus size: 81
26533192 TGGAACGCCT
* * * * *
26533202 TTGTGGTGAATTATGAAAGGAACACCTTTGTGGTGTAATATGAAAGGAAAGCCTTTATGGCGCAA
1 TTGTGGTGAATTATAAAAGGAACACCTTTATGGTGCAATATAAAAGGAAAGCCTTTATAGCGCAA
26533267 TATGAAAGAAATGTCG
66 TATGAAAGAAATGTCG
** *
26533283 TTGTGGTGAATTATAAAAGGAACGTCTTTATGGTGCAATATAAAAGGAAAGCCTTTTTAGCGCAA
1 TTGTGGTGAATTATAAAAGGAACACCTTTATGGTGCAATATAAAAGGAAAGCCTTTATAGCGCAA
26533348 TATGAAA
66 TATGAAA
26533355 AGAACGCCTC
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 64 1.00
ACGTcount: A:0.36, C:0.10, G:0.25, T:0.29
Consensus pattern (81 bp):
TTGTGGTGAATTATAAAAGGAACACCTTTATGGTGCAATATAAAAGGAAAGCCTTTATAGCGCAA
TATGAAAGAAATGTCG
Found at i:26535249 original size:18 final size:18
Alignment explanation
Indices: 26535200--26535250 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
26535190 CTCCTCATAT
*
26535200 TCTTCATATTCATCTTTA
1 TCTTCATCTTCATCTTTA
* * * *
26535218 CCTTGAGCTCCATCTTTA
1 TCTTCATCTTCATCTTTA
26535236 TCTTCATCTTCATCT
1 TCTTCATCTTCATCT
26535251 CATTCCTCCG
Statistics
Matches: 24, Mismatches: 9, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.18, C:0.29, G:0.04, T:0.49
Consensus pattern (18 bp):
TCTTCATCTTCATCTTTA
Found at i:26542289 original size:23 final size:23
Alignment explanation
Indices: 26542253--26542298 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
26542243 TTTAATTAAA
* *
26542253 TTATTAAAAGGTTTGATTATAAG
1 TTATTAAAAGGTTTCATGATAAG
26542276 TTATTACAAA-GTTTCATGATAAG
1 TTATTA-AAAGGTTTCATGATAAG
26542299 GTTGACAGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 17 0.85
24 3 0.15
ACGTcount: A:0.39, C:0.04, G:0.15, T:0.41
Consensus pattern (23 bp):
TTATTAAAAGGTTTCATGATAAG
Found at i:26545744 original size:17 final size:17
Alignment explanation
Indices: 26545722--26545760 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
26545712 AAGTTAGATA
*
26545722 AAATAATTAAAATAAAT
1 AAATAACTAAAATAAAT
*
26545739 AAATAACTAAGATAAAT
1 AAATAACTAAAATAAAT
26545756 AAATA
1 AAATA
26545761 GAACAATAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.26
Consensus pattern (17 bp):
AAATAACTAAAATAAAT
Found at i:26546679 original size:27 final size:27
Alignment explanation
Indices: 26546649--26546703 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
26546639 CATCGATACT
26546649 CATAGAAAGGTGTATCGAGACTTCGTA
1 CATAGAAAGGTGTATCGAGACTTCGTA
*
26546676 CATAGGAAGGTGTATCGAGACTTCGTA
1 CATAGAAAGGTGTATCGAGACTTCGTA
26546703 C
1 C
26546704 TGTAGGTTTG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.25
Consensus pattern (27 bp):
CATAGAAAGGTGTATCGAGACTTCGTA
Found at i:26548674 original size:34 final size:33
Alignment explanation
Indices: 26548636--26548712 Score: 91
Period size: 33 Copynumber: 2.3 Consensus size: 33
26548626 ATAGTATTCT
* *
26548636 ATTTTTTGTACATAATTAACTATTTTAATTTTGA
1 ATTTTTT-TACATAATTAAATATTTTAATTTTAA
** *
26548670 ATTTTTTTAGTTAATTAAATATTTTTATTTTAA
1 ATTTTTTTACATAATTAAATATTTTAATTTTAA
*
26548703 ATATTTTTAC
1 ATTTTTTTAC
26548713 TTACCTTGTT
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
33 29 0.81
34 7 0.19
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.60
Consensus pattern (33 bp):
ATTTTTTTACATAATTAAATATTTTAATTTTAA
Found at i:26548704 original size:15 final size:15
Alignment explanation
Indices: 26548651--26548711 Score: 59
Period size: 15 Copynumber: 3.9 Consensus size: 15
26548641 TTGTACATAA
* *
26548651 TTAACTATTTTAATT
1 TTAAATATTTTTATT
* *
26548666 TTGAATTTTTTTAGTT
1 TTAAATATTTTTA-TT
26548682 AATTAAATATTTTTATT
1 --TTAAATATTTTTATT
26548699 TTAAATATTTTTA
1 TTAAATATTTTTA
26548712 CTTACCTTGT
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
15 22 0.59
16 2 0.05
17 2 0.05
18 11 0.30
ACGTcount: A:0.33, C:0.02, G:0.03, T:0.62
Consensus pattern (15 bp):
TTAAATATTTTTATT
Found at i:26548710 original size:33 final size:33
Alignment explanation
Indices: 26548648--26548711 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
26548638 TTTTTGTACA
* * *
26548648 TAATTAACTATTTTAATTTTGAATTTTTTTAGT
1 TAATTAAATATTTTAATTTTAAATATTTTTAGT
*
26548681 TAATTAAATATTTTTATTTTAAATATTTTTA
1 TAATTAAATATTTTAATTTTAAATATTTTTA
26548712 CTTACCTTGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.34, C:0.02, G:0.03, T:0.61
Consensus pattern (33 bp):
TAATTAAATATTTTAATTTTAAATATTTTTAGT
Found at i:26550069 original size:27 final size:27
Alignment explanation
Indices: 26550014--26550085 Score: 67
Period size: 27 Copynumber: 2.7 Consensus size: 27
26550004 GGCGATCTTA
* *
26550014 GTTCACC-AACCTATTGGCAAAATCCT
1 GTTCACCAAACCTACTGGCAAAACCCT
*
26550040 GTTCACCAAACCTACTGGC-TAACCCTT
1 GTTCACCAAACCTACTGGCAAAACCC-T
* * *
26550067 GTTCGCCAATCATACTGGC
1 GTTCACCAAACCTACTGGC
26550086 GATCTCAACT
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
26 11 0.29
27 27 0.71
ACGTcount: A:0.26, C:0.33, G:0.14, T:0.26
Consensus pattern (27 bp):
GTTCACCAAACCTACTGGCAAAACCCT
Found at i:26555925 original size:26 final size:26
Alignment explanation
Indices: 26555883--26555934 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26555873 GTTAATCCTA
26555883 TTTGATATGGCAATGTTTGTGCTTTTG
1 TTTGATATGGCAATGTTT-TGCTTTTG
* *
26555910 TTTGATA-GGCATTGTTTTGGTTTTG
1 TTTGATATGGCAATGTTTTGCTTTTG
26555935 GTAATTCTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 7 0.30
26 9 0.39
27 7 0.30
ACGTcount: A:0.13, C:0.06, G:0.27, T:0.54
Consensus pattern (26 bp):
TTTGATATGGCAATGTTTTGCTTTTG
Found at i:26558648 original size:43 final size:43
Alignment explanation
Indices: 26558556--26558648 Score: 116
Period size: 43 Copynumber: 2.2 Consensus size: 43
26558546 ATCTGAGATA
* *
26558556 TGGCATCAATATAAGAATTCGTGTAAGACCATGTCTGGGACAT
1 TGGCATCAATATAAGAATTCGTATAAGACCATGGCTGGGACAT
* ** *
26558599 TAGCATCAATATGTGATTTCGTATAAGACCATGGCTGGG-CAAT
1 TGGCATCAATATAAGAATTCGTATAAGACCATGGCTGGGAC-AT
26558642 TGGCATC
1 TGGCATC
26558649 GATACGAGAT
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
42 1 0.02
43 41 0.98
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (43 bp):
TGGCATCAATATAAGAATTCGTATAAGACCATGGCTGGGACAT
Found at i:26558669 original size:43 final size:43
Alignment explanation
Indices: 26558577--26558673 Score: 106
Period size: 43 Copynumber: 2.3 Consensus size: 43
26558567 TAAGAATTCG
* * * * *
26558577 TGTAAGACCATGTCTGGGACATTAGCATCAATATGTGATTTCG
1 TGTAAGACCATGGCTGGGACATTAGCATCAATACGAGATTACA
* * *
26558620 TATAAGACCATGGCTGGG-CAATTGGCATCGATACGAGATTACA
1 TGTAAGACCATGGCTGGGAC-ATTAGCATCAATACGAGATTACA
26558663 TGTAAGACCAT
1 TGTAAGACCAT
26558674 ATTTGAGATA
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
42 1 0.02
43 43 0.98
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.28
Consensus pattern (43 bp):
TGTAAGACCATGGCTGGGACATTAGCATCAATACGAGATTACA
Found at i:26561859 original size:32 final size:33
Alignment explanation
Indices: 26561818--26561887 Score: 97
Period size: 32 Copynumber: 2.2 Consensus size: 33
26561808 CGAGATTACG
* *
26561818 TGTAAGACCATATCTGAGATA-TGGCATCTATA
1 TGTAAGACCATATCTGAGACATTGGCATCGATA
* *
26561850 TGTAAGACCATGTCTGGGACATTGGCATCGATA
1 TGTAAGACCATATCTGAGACATTGGCATCGATA
26561883 TGTAA
1 TGTAA
26561888 TTTCGTATAA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
32 18 0.55
33 15 0.45
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (33 bp):
TGTAAGACCATATCTGAGACATTGGCATCGATA
Found at i:26561942 original size:43 final size:43
Alignment explanation
Indices: 26561849--26561946 Score: 119
Period size: 43 Copynumber: 2.3 Consensus size: 43
26561839 TGGCATCTAT
* * *
26561849 ATGTAAGACCATGTCTGGGACATTGGCATCGATATGTAATTTC
1 ATGTAAGACCATGGCTGGGACATTGGCATCGATACGTAATTAC
* *
26561892 GTATAAGACCATGGCTGGG-CTATTGGCATCGATACG-AGATTAC
1 ATGTAAGACCATGGCTGGGAC-ATTGGCATCGATACGTA-ATTAC
26561935 ATGTAAGACCAT
1 ATGTAAGACCAT
26561947 ATTTGGGATA
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
42 2 0.04
43 44 0.96
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (43 bp):
ATGTAAGACCATGGCTGGGACATTGGCATCGATACGTAATTAC
Found at i:26564598 original size:16 final size:16
Alignment explanation
Indices: 26564579--26564618 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
26564569 GGGTTTAGGC
26564579 TTTTAAGGGTATTTAA
1 TTTTAAGGGTATTTAA
*
26564595 TTTTAATGGTATTTAA
1 TTTTAAGGGTATTTAA
*
26564611 ATTTAAGG
1 TTTTAAGG
26564619 TTTAAATTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (16 bp):
TTTTAAGGGTATTTAA
Found at i:26565142 original size:21 final size:21
Alignment explanation
Indices: 26565118--26565159 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
26565108 AATTTTGTTG
*
26565118 TATTTTCTTTTAATT-TTTAAA
1 TATTTT-TTGTAATTATTTAAA
26565139 TATTTTTTGTAATTATTTAAA
1 TATTTTTTGTAATTATTTAAA
26565160 AAATCACATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.64
Consensus pattern (21 bp):
TATTTTTTGTAATTATTTAAA
Found at i:26567220 original size:54 final size:54
Alignment explanation
Indices: 26567149--26567258 Score: 157
Period size: 54 Copynumber: 2.0 Consensus size: 54
26567139 AATTGAGTTA
* * * *
26567149 AATAATTAAGCTTTATTAAAATATGAAATAGAATAAAAGGATAAAACACACTTG
1 AATAATTAAACTCTATTAAAATATAAAATAGAATAAAAGAATAAAACACACTTG
** *
26567203 AATAATTAAACTCTATTAAAATATAAAATAGAATAGGAGAATAAAACGCACTTG
1 AATAATTAAACTCTATTAAAATATAAAATAGAATAAAAGAATAAAACACACTTG
26567257 AA
1 AA
26567259 CATGATTGAA
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 49 1.00
ACGTcount: A:0.55, C:0.08, G:0.11, T:0.26
Consensus pattern (54 bp):
AATAATTAAACTCTATTAAAATATAAAATAGAATAAAAGAATAAAACACACTTG
Found at i:26574054 original size:21 final size:21
Alignment explanation
Indices: 26574029--26574072 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
26574019 AATATTTTAC
26574029 TAAATATTTA-CACAGTGTTAT
1 TAAATATTTATCA-AGTGTTAT
*
26574050 TAAATATTTATGAAGTGTTAT
1 TAAATATTTATCAAGTGTTAT
26574071 TA
1 TA
26574073 CGGTTGTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 20 0.95
22 1 0.05
ACGTcount: A:0.39, C:0.05, G:0.11, T:0.45
Consensus pattern (21 bp):
TAAATATTTATCAAGTGTTAT
Found at i:26579730 original size:20 final size:20
Alignment explanation
Indices: 26579700--26579737 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
26579690 TTGAAAGAAA
26579700 AACTCAAAGAGAA-TTGATT
1 AACTCAAAGAGAAGTTGATT
26579719 AACTCAAAAGAGAAGTTGA
1 AACTC-AAAGAGAAGTTGA
26579738 ATAATACTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 5 0.29
20 8 0.47
21 4 0.24
ACGTcount: A:0.50, C:0.11, G:0.18, T:0.21
Consensus pattern (20 bp):
AACTCAAAGAGAAGTTGATT
Found at i:26583112 original size:18 final size:19
Alignment explanation
Indices: 26583084--26583119 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
26583074 TTGATGGAAA
26583084 GGATGTTGAATTATACTTT
1 GGATGTTGAATTATACTTT
*
26583103 GGAT-TTGAATTTTACTT
1 GGATGTTGAATTATACTT
26583120 GCCAACCCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.25, C:0.06, G:0.19, T:0.50
Consensus pattern (19 bp):
GGATGTTGAATTATACTTT
Found at i:26591750 original size:30 final size:30
Alignment explanation
Indices: 26591704--26591761 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
26591694 TCCGAGCTTT
*
26591704 GGGGAAAAAGTGTAATTATGTAAAAGTTTA
1 GGGGAAAAAGTGTAATTATGCAAAAGTTTA
* * *
26591734 GGGGTAAAATTGTAATTTTGCAAAAGTT
1 GGGGAAAAAGTGTAATTATGCAAAAGTT
26591762 AGAGTCGAGG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.40, C:0.02, G:0.26, T:0.33
Consensus pattern (30 bp):
GGGGAAAAAGTGTAATTATGCAAAAGTTTA
Found at i:26592187 original size:56 final size:50
Alignment explanation
Indices: 26592104--26592345 Score: 204
Period size: 50 Copynumber: 4.7 Consensus size: 50
26592094 GGTGATGAGA
* * * *
26592104 TCCCATGTAAGACTATGTTTGGAACATGGCATTGGCATCATTGAGATTATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGAGA-TA--AGAGG
* *
26592160 TCTCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATAAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATAAGAGG
* * * * **
26592210 TCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATAAGAGG
* * * * * *
26592260 TCCCATGTAAGACCATATCTGGGATATGACATTGGCAGTACAAGA-AACA--
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA--CCGAGATAAGAGG
*
26592309 TCCCATGTAATACCATGTCTGGGACATGG-ATTTGGCA
1 TCCCATGTAAGACCATGTCTGGGACATGGCA-TTGGCA
26592346 TGTTATTATC
Statistics
Matches: 155, Mismatches: 28, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
48 1 0.01
49 31 0.20
50 79 0.51
51 2 0.01
52 5 0.03
53 4 0.03
55 1 0.01
56 32 0.21
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATAAGAGG
Found at i:26593958 original size:12 final size:12
Alignment explanation
Indices: 26593943--26593968 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
26593933 CTAATTGTCT
26593943 ATACTTAGGTAC
1 ATACTTAGGTAC
26593955 ATACTTAGGTAC
1 ATACTTAGGTAC
26593967 AT
1 AT
26593969 TTAATTGCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (12 bp):
ATACTTAGGTAC
Found at i:26597035 original size:16 final size:17
Alignment explanation
Indices: 26597007--26597039 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
26596997 AAGAACAGGA
26597007 ATAAGTTAGAAAATTAG
1 ATAAGTTAGAAAATTAG
26597024 ATAAGTTA-AAAATTAG
1 ATAAGTTAGAAAATTAG
26597040 CAATCGTATC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.55, C:0.00, G:0.15, T:0.30
Consensus pattern (17 bp):
ATAAGTTAGAAAATTAG
Found at i:26619297 original size:4 final size:4
Alignment explanation
Indices: 26619283--26619312 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
26619273 ATTATACAGC
*
26619283 AATA TATA AATA AATA AATA AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AATA AA
26619313 AGAAATCTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (4 bp):
AATA
Found at i:26621334 original size:8 final size:9
Alignment explanation
Indices: 26621313--26621342 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
26621303 AAAATTTATT
26621313 TAAAAATTA
1 TAAAAATTA
26621322 TAAAAATTA
1 TAAAAATTA
26621331 -AAAAATTA
1 TAAAAATTA
26621339 TAAA
1 TAAA
26621343 GTATACCTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.40
9 12 0.60
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (9 bp):
TAAAAATTA
Found at i:26624779 original size:3 final size:3
Alignment explanation
Indices: 26624767--26624795 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
26624757 GAACTACTTC
26624767 CTT C-T CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
26624796 TGTTTTTTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 23 0.92
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
CTT
Found at i:26645099 original size:56 final size:51
Alignment explanation
Indices: 26645019--26645257 Score: 218
Period size: 50 Copynumber: 4.7 Consensus size: 51
26645009 GATGAGATCT
* * *
26645019 CATGTAAGACCATGTTTGGAACATGGCATTGGCATCATTGAGATTATGAGAGG-CCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCA-C-CT-AG---ATGAGAGGTCCC
26645075 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCTAGATGAGAGGTCCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCTAGATGAGAGGTCCC
* * * * **
26645126 C-CGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAACT-CC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCTAGATGAGAGGTCCC
* * * * * * * **
26645175 CATGTAAGACCATATCTGGGATATAGCATTGGCA-GTACAGGAAACAT-CC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCTAGATGAGAGGTCCC
*
26645224 CATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCA
26645258 TGTTATTATC
Statistics
Matches: 156, Mismatches: 25, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
49 41 0.26
50 75 0.48
51 4 0.03
53 2 0.01
54 1 0.01
55 1 0.01
56 32 0.21
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (51 bp):
CATGTAAGACCATGTCTGGGACATGGCATTGGCACCTAGATGAGAGGTCCC
Found at i:26646143 original size:16 final size:16
Alignment explanation
Indices: 26646124--26646175 Score: 58
Period size: 15 Copynumber: 3.4 Consensus size: 16
26646114 TTATATTATA
26646124 AAAATATTATTAAATT
1 AAAATATTATTAAATT
26646140 AAAATATTA-TAAATT
1 AAAATATTATTAAATT
26646155 ---ATATTAATTAAAATT
1 AAAATATT-ATT-AAATT
26646170 AAAATA
1 AAAATA
26646176 ATATATTATA
Statistics
Matches: 30, Mismatches: 0, Indels: 10
0.75 0.00 0.25
Matches are distributed among these distances:
12 5 0.17
13 1 0.03
14 1 0.03
15 11 0.37
16 9 0.30
18 3 0.10
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (16 bp):
AAAATATTATTAAATT
Found at i:26646159 original size:25 final size:26
Alignment explanation
Indices: 26646116--26646168 Score: 74
Period size: 24 Copynumber: 2.1 Consensus size: 26
26646106 TTCTTGATTT
26646116 ATATTATAAAAATATTATTAAATTAAA
1 ATATTATAAAAATATTATT-AATTAAA
*
26646143 ATATTAT-AAATTA-TATTAATTAAA
1 ATATTATAAAAATATTATTAATTAAA
26646167 AT
1 AT
26646169 TAAAATAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
24 9 0.36
25 4 0.16
26 5 0.20
27 7 0.28
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (26 bp):
ATATTATAAAAATATTATTAATTAAA
Found at i:26646171 original size:30 final size:27
Alignment explanation
Indices: 26646116--26646180 Score: 85
Period size: 30 Copynumber: 2.3 Consensus size: 27
26646106 TTCTTGATTT
26646116 ATATTATAAAAATATTATTAAATTAAA
1 ATATTATAAAAATATTATTAAATTAAA
*
26646143 ATATTATAAATTATATTAATTAAAATTAAA
1 ATATTATAAA-AATATT-ATT-AAATTAAA
*
26646173 ATAATATA
1 ATATTATA
26646181 TTATAGGAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
27 10 0.30
28 5 0.15
29 3 0.09
30 15 0.45
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (27 bp):
ATATTATAAAAATATTATTAAATTAAA
Found at i:26646865 original size:108 final size:106
Alignment explanation
Indices: 26646687--26646886 Score: 328
Period size: 108 Copynumber: 1.9 Consensus size: 106
26646677 TGGATTGAGA
*
26646687 TTTAAGAGGATATTTGGCTATTTGGTCAAACGAGAAATCGAAACCCAGCACATTAGGGCACGTTT
1 TTTAAAAGGATATTTGGCTATTTGGTCAAACGAGAAATCGAAACCCAGCACATTAGGGCACGTTT
*
26646752 CCTCGAATTTCCAAACGCAAAATATTGTCTTACTTCGAAAT
66 CCTCGAATTTCCAAACGCAAAACATTGTCTTACTTCGAAAT
* * *
26646793 TTTAAAAGGATATTTGGCTATTTGGTCGAACGAGAAAAATCGACACCCAGCACATTAGGGCGCGT
1 TTTAAAAGGATATTTGGCTATTTGGTCAAACGAG--AAATCGAAACCCAGCACATTAGGGCACGT
*
26646858 TTTCTCGAATTTCCAAACGCAAAACATTG
64 TTCCTCGAATTTCCAAACGCAAAACATTG
26646887 CCTTTATTAT
Statistics
Matches: 86, Mismatches: 6, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
106 32 0.37
108 54 0.63
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (106 bp):
TTTAAAAGGATATTTGGCTATTTGGTCAAACGAGAAATCGAAACCCAGCACATTAGGGCACGTTT
CCTCGAATTTCCAAACGCAAAACATTGTCTTACTTCGAAAT
Found at i:26648391 original size:10 final size:10
Alignment explanation
Indices: 26648373--26648411 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
26648363 GCACAAAACA
26648373 AAATAAAAAAT
1 AAAT-AAAAAT
*
26648384 GAAT-AAAAT
1 AAATAAAAAT
26648393 AAATAAAAAT
1 AAATAAAAAT
26648403 AAATAAAAA
1 AAATAAAAA
26648412 AGGATTTGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
9 8 0.32
10 14 0.56
11 3 0.12
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (10 bp):
AAATAAAAAT
Found at i:26648402 original size:19 final size:20
Alignment explanation
Indices: 26648373--26648410 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
26648363 GCACAAAACA
*
26648373 AAATAAAAAATGAATAAAAT
1 AAATAAAAAATAAATAAAAT
26648393 AAAT-AAAAATAAATAAAA
1 AAATAAAAAATAAATAAAA
26648411 AAGGATTTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (20 bp):
AAATAAAAAATAAATAAAAT
Found at i:26649252 original size:44 final size:43
Alignment explanation
Indices: 26649100--26649391 Score: 193
Period size: 44 Copynumber: 6.8 Consensus size: 43
26649090 GAATTCATCA
* * * * *
26649100 TTTTAATCCGCTCCACTACAACTTCAGGGAGACAGGAT-TAGC
1 TTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATCTTGG
* *
26649142 TTCTTCTATCCGCTCCACTGCAACTTCAGGGAGATAAG-GC-TGG
1 TT-TT-AATCCGCTCCACTGCAACTTCAGGGAGATAAGATCTTGG
* *** * * *
26649185 ATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGG
1 TTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATCT-TGG
*
26649229 TTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGA--TTGG
1 TTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATCTTGG
** * * * *
26649270 ATTCTTTTGTCTGCTCCACTGTAACTTTAGGGAGAT-AGAAC-TGG
1 --T-TTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATCTTGG
* *** * * *
26649314 ATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGG
1 TTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATCT-TGG
* * *
26649358 TTTTAATCCGCTCTATTGTAACTTCAGGGAGATA
1 TTTTAATCCGCTCCACTGCAACTTCAGGGAGATA
26649392 GGATTGGTTT
Statistics
Matches: 189, Mismatches: 47, Indels: 26
0.72 0.18 0.10
Matches are distributed among these distances:
41 55 0.29
42 8 0.04
43 7 0.04
44 119 0.63
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (43 bp):
TTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATCTTGG
Found at i:26649303 original size:129 final size:129
Alignment explanation
Indices: 26649100--26649411 Score: 482
Period size: 129 Copynumber: 2.4 Consensus size: 129
26649090 GAATTCATCA
* * * * * * *
26649100 TTTTAATCCGCTCCACTACAACTTCAGGGAGACAGGATTAGCTTCTTCTATCCGCTCCACTGCAA
1 TTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGATTCTTTTGTCTGCTCCACTGCAA
*
26649165 CTTCAGGGAGATA-AGGCTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGG
66 CTTCAGGGAGATAGA-ACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGG
*
26649229 TTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGATTCTTTTGTCTGCTCCACTGTAA
1 TTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGATTCTTTTGTCTGCTCCACTGCAA
*
26649294 CTTTAGGGAGATAGAACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGG
66 CTTCAGGGAGATAGAACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGG
* * * *
26649358 TTTTAATCCGCTCTATTGTAACTTCAGGGAGATAGGATTGGTTTCTTTTGTCTG
1 TTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGATTCTTTTGTCTG
26649412 TTTAACTGCA
Statistics
Matches: 168, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
129 167 0.99
130 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (129 bp):
TTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGATTCTTTTGTCTGCTCCACTGCAA
CTTCAGGGAGATAGAACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGG
Found at i:26649630 original size:100 final size:100
Alignment explanation
Indices: 26649412--26650519 Score: 1442
Period size: 100 Copynumber: 11.1 Consensus size: 100
26649402 CTTTTGTCTG
* * * ** * * *
26649412 TTTAACTGCAATGTCGGGGAAGTAAGATTTGCCGTCATAGCTTCAATCTATTCCATTACACCGCC
1 TTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGCC
* *
26649477 TGGGAA-TAAGATTCTCTGTTGTGGCTTCAATC-T
66 TGGGAAGTAAGATTCACCGTTGTGGCTTCAATCTT
26649510 TTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGCC
1 TTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGCC
* *
26649575 TGGGAAAGTAAGA-TCTGCCGTTGTGGATTCAATC-T
66 TGGG-AAGTAAGATTC-ACCGTTGTGGCTTCAATCTT
* ** * *
26649610 TTTAATTGCAATATCGGGGAAAG-AAGATTCGTTGTTGTAGCTTCAATCTATTCCACAGCACCGC
1 TTTAATTGCAATGTCGGGG-AAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGC
** * * *
26649674 CTGGGAGAGTAAGACCCGCCGTTGTGGTTTCAAT-AT
65 CTGGGA-AGTAAGATTCACCGTTGTGGCTTCAATCTT
** *
26649710 TTTAATTGCAATGTCGGGGAAAG-AAGATTCGTTGTTGTAGCTTCAATCTATTCCACTGCACCGC
1 TTTAATTGCAATGTCGGGG-AAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGC
* *
26649774 ATGGGAAGTAAGATTCACCGTTGTGGCCTCAATCTT
65 CTGGGAAGTAAGATTCACCGTTGTGGCTTCAATCTT
* * *
26649810 TTTAATTGCAATGTCGTGGAAGCAAGATTCGCCGTTGTAGCTTCAATTTGTTCCGCTGCACCGCC
1 TTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGCC
*
26649875 AGGGAAGTAAGATTCACCGTTGTGGGC-TCAATCTT
66 TGGGAAGTAAGATTCACCGTTGT-GGCTTCAATCTT
* * * *
26649910 TTTAATTGCAATGTCGAGGAAGCAAGATTCACCGTTGTAGCTTCAATTTGTTCCGCTGCACCGCC
1 TTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGCC
* * *
26649975 AGGGAAGTAAGATTCGCCGTTGTGGCCTCAATCTT
66 TGGGAAGTAAGATTCACCGTTGTGGCTTCAATCTT
* * * *
26650010 TTTAATTGCAATGTCGGGGAAGCAAGATTCGCCATTGTAGCTTCAATTTGTTCCGCTGCATCGCC
1 TTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGCC
* * *
26650075 TGAGAAGTAAGATTCACCATTGTAGCTTCAATCTT
66 TGGGAAGTAAGATTCACCGTTGTGGCTTCAATCTT
* * *
26650110 TTTAATTGTAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTATTCCACTGCATCGCC
1 TTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGCC
** * *
26650175 TGTAAAGTAAGATTCGCCGTTGTAGCTTCAATCTT
66 TGGGAAGTAAGATTCACCGTTGTGGCTTCAATCTT
* * * * *
26650210 TTTAATTGCAATGTTGGAGAAGCAAGATTCACTGTTGTAGCTTCAATCTGTTCCACTGCACCACC
1 TTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGCC
* * *
26650275 TGGAAAGTAAGATTCGCCGTTGTAGCTTCAATCTT
66 TGGGAAGTAAGATTCACCGTTGTGGCTTCAATCTT
* **
26650310 TTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTTAATCTGTTCTGCTGCACCGCC
1 TTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGCC
* *
26650375 TGGGAAGTAAGATTCACCGTTGTGGCCTCAACCTT
66 TGGGAAGTAAGATTCACCGTTGTGGCTTCAATCTT
* * ** *
26650410 TTTAATTGCAATATCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTATTCCGTTACACCGCC
1 TTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGCC
* * *
26650475 TGAGAAGTAAGATTCACCGTTGTGGCCTCAGTC-T
66 TGGGAAGTAAGATTCACCGTTGTGGCTTCAATCTT
26650509 TTTAATTGCAA
1 TTTAATTGCAA
26650520 ACTATGGTTT
Statistics
Matches: 911, Mismatches: 88, Indels: 21
0.89 0.09 0.02
Matches are distributed among these distances:
98 61 0.07
99 45 0.05
100 798 0.88
101 7 0.01
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (100 bp):
TTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGCC
TGGGAAGTAAGATTCACCGTTGTGGCTTCAATCTT
Found at i:26650395 original size:50 final size:49
Alignment explanation
Indices: 26649428--26650519 Score: 615
Period size: 50 Copynumber: 21.9 Consensus size: 49
26649418 TGCAATGTCG
* ** * * *
26649428 GGGAAGTAAGATTTGCCGTCATAGCTTCAATCTATTCCATTACACCGCCT
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCT-TTCTATTGCAACGCCT
* * * * * *
26649478 GGGAA-TAAGATTCTCTGTTGTGGCTTCAATCTTT-TAATTGCAATGTCG
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTCT-ATTGCAACGCCT
* * * *
26649526 GGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCT
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCT-TTCTATTGCAACGCCT
* * *** *
26649576 GGGAAAGTAAGA-TCTGCCGTTGTGGATTCAATCTTT-TAATTGCAATATCG
1 GGG-AAGTAAGATTC-GCCGTTGTAGCTTCAATCTTTCT-ATTGCAACGCCT
** * ** *
26649626 GGGAAAG-AAGATTCGTTGTTGTAGCTTCAATCTATTCCACAGCACCGCCT
1 GGG-AAGTAAGATTCGCCGTTGTAGCTTCAATCT-TTCTATTGCAACGCCT
** * * * * * *
26649676 GGGAGAGTAAGACCCGCCGTTGTGGTTTCAATATTT-TAATTGCAATGTCG
1 GGGA-AGTAAGATTCGCCGTTGTAGCTTCAATCTTTCT-ATTGCAACGCCT
** * * * *
26649726 GGGAAAG-AAGATTCGTTGTTGTAGCTTCAATCTATTCCACTGCACCGCAT
1 GGG-AAGTAAGATTCGCCGTTGTAGCTTCAATCT-TTCTATTGCAACGCCT
* * * * * *
26649776 GGGAAGTAAGATTCACCGTTGTGGCCTCAATCTTTTTAATTGCAATGTC-
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTCT-ATTGCAACGCCT
* * *** * *
26649825 GTGGAAGCAAGATTCGCCGTTGTAGCTTCAATTTGTTCCGCTGCACCGCCA
1 G-GGAAGTAAGATTCGCCGTTGTAGCTTCAATCT-TTCTATTGCAACGCCT
* * * * *
26649876 GGGAAGTAAGATTCACCGTTGTGGGC-TCAATCTTTTTAATTGCAATGTC-
1 GGGAAGTAAGATTCGCCGTTGT-AGCTTCAATCTTTCT-ATTGCAACGCCT
* * * *** * *
26649925 GAGGAAGCAAGATTCACCGTTGTAGCTTCAATTTGTTCCGCTGCACCGCCA
1 G-GGAAGTAAGATTCGCCGTTGTAGCTTCAATCT-TTCTATTGCAACGCCT
* * * * * *
26649976 GGGAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTTAATTGCAATGTCG
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTCT-ATTGCAACGCCT
* * * *** *
26650026 GGGAAGCAAGATTCGCCATTGTAGCTTCAATTTGTTCCGCTGCATCGCCT
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCT-TTCTATTGCAACGCCT
* * * * * * * *
26650076 GAGAAGTAAGATTCACCATTGTAGCTTCAATCTTTTTAATTGTAATGTCG
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTCT-ATTGCAACGCCT
* * * *
26650126 GGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTATTCCACTGCATCGCCT
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCT-TTCTATTGCAACGCCT
** * * *
26650176 GTAAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTTAATTGCAATG-TT
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTCT-ATTGCAACGCCT
* * * * * * *
26650225 GGAGAAGCAAGATTCACTGTTGTAGCTTCAATCTGTTCCACTGCACCACCT
1 GG-GAAGTAAGATTCGCCGTTGTAGCTTCAATCT-TTCTATTGCAACGCCT
* * * * *
26650276 GGAAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTTAATTGCAATGTCG
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTCT-ATTGCAACGCCT
* * ** *
26650326 GGGAAGCAAGATTCGCCGTTGTAGCTTTAATCTGTTCTGCTGCACCGCCT
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCT-TTCTATTGCAACGCCT
* * * * * *** *
26650376 GGGAAGTAAGATTCACCGTTGTGGCCTCAACCTTTTTAATTGCAATATCG
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTCT-ATTGCAACGCCT
* ** * *
26650426 GGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTATTCCGTTACACCGCCT
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCT-TTCTATTGCAACGCCT
* * * * *
26650476 GAGAAGTAAGATTCACCGTTGTGGCCTCAGTCTTT-TAATTGCAA
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTCT-ATTGCAA
26650520 ACTATGGTTT
Statistics
Matches: 753, Mismatches: 249, Indels: 81
0.70 0.23 0.07
Matches are distributed among these distances:
48 14 0.02
49 113 0.15
50 560 0.74
51 66 0.09
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.32
Consensus pattern (49 bp):
GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTCTATTGCAACGCCT
Found at i:26650877 original size:24 final size:25
Alignment explanation
Indices: 26650817--26650878 Score: 76
Period size: 24 Copynumber: 2.6 Consensus size: 25
26650807 TCGGATTGCC
26650817 CCCACTGTAATTTTCAAAGTTCAAT
1 CCCACTGTAATTTTCAAAGTTCAAT
* *
26650842 -CCATTGTGATTTTCAAA--TCTAAT
1 CCCACTGTAATTTTCAAAGTTC-AAT
26650865 CCCACTGTAATTTT
1 CCCACTGTAATTTT
26650879 GGGACTCAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
22 2 0.06
23 3 0.10
24 26 0.84
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (25 bp):
CCCACTGTAATTTTCAAAGTTCAAT
Found at i:26654960 original size:108 final size:105
Alignment explanation
Indices: 26654788--26654986 Score: 292
Period size: 108 Copynumber: 1.9 Consensus size: 105
26654778 TGGATTGAGA
*
26654788 TTTAAGAGAATATTTGGCTATTTGGTCAAGCGAGAAATCGAAACCCAGCACATTAGGGCACGTTT
1 TTTAAAAGAATATTTGGCTATTTGGTCAAGCGAGAAATCGAAACCCAGCACATTAGGGCACGTTT
* *
26654853 CCTCGAATTTCCAAATGCAAAATATTGTCTTACTTTGAAAT
66 CCTCGAA-TTCCAAACGCAAAACATTGTCTTACTTTGAAAT
* * *
26654894 TTTAAAAGGATATTTGGCTATTTGGTCGAA-CGAGAAAAATCGACACCCAGCACATTAGGGCGCG
1 TTTAAAAGAATATTTGGCTATTTGGTC-AAGCGAG--AAATCGAAACCCAGCACATTAGGGCACG
*
26654958 TTTTCTCGAATTCCAAACGCAAAACATTG
63 TTTCCTCGAATTCCAAACGCAAAACATTG
26654987 CCTTTATTAT
Statistics
Matches: 83, Mismatches: 7, Indels: 5
0.87 0.07 0.05
Matches are distributed among these distances:
106 29 0.35
107 19 0.23
108 35 0.42
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (105 bp):
TTTAAAAGAATATTTGGCTATTTGGTCAAGCGAGAAATCGAAACCCAGCACATTAGGGCACGTTT
CCTCGAATTCCAAACGCAAAACATTGTCTTACTTTGAAAT
Found at i:26655683 original size:14 final size:14
Alignment explanation
Indices: 26655661--26655746 Score: 52
Period size: 14 Copynumber: 6.2 Consensus size: 14
26655651 ATATACACGT
*
26655661 ATATGTATATAAAA
1 ATATATATATAAAA
*
26655675 ATGTATATA-AAAA
1 ATATATATATAAAA
* *
26655688 TTATA-AAATATAAA
1 ATATATATATA-AAA
*
26655702 ATATA-AAATATAAA
1 ATATATATATA-AAA
**
26655716 ATATATATATAAGT
1 ATATATATATAAAA
* *
26655730 ATGTATATATATAA
1 ATATATATATAAAA
26655744 ATA
1 ATA
26655747 ACTCAATTAC
Statistics
Matches: 55, Mismatches: 14, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
12 2 0.04
13 8 0.15
14 41 0.75
15 4 0.07
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (14 bp):
ATATATATATAAAA
Found at i:26655692 original size:11 final size:12
Alignment explanation
Indices: 26655663--26655692 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
26655653 ATACACGTAT
26655663 ATGTATATAAAA
1 ATGTATATAAAA
26655675 ATGTATATAAAA
1 ATGTATATAAAA
26655687 AT-TATA
1 ATGTATA
26655693 AAATATAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 4 0.22
12 14 0.78
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.37
Consensus pattern (12 bp):
ATGTATATAAAA
Found at i:26655701 original size:7 final size:7
Alignment explanation
Indices: 26655679--26655720 Score: 66
Period size: 7 Copynumber: 5.7 Consensus size: 7
26655669 ATAAAAATGT
26655679 ATATAAAA
1 ATAT-AAA
26655687 ATTATAAA
1 A-TATAAA
26655695 ATATAAA
1 ATATAAA
26655702 ATATAAA
1 ATATAAA
26655709 ATATAAA
1 ATATAAA
26655716 ATATA
1 ATATA
26655721 TATATAAGTA
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
7 25 0.76
8 5 0.15
9 3 0.09
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (7 bp):
ATATAAA
Done.