Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62811768
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 736185 characters in sequence are not A, C, G, or T
File 96 of 211
Found at i:26656533 original size:19 final size:19
Alignment explanation
Indices: 26656492--26656535 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
26656482 TTTTGCACCT
*
26656492 AAAAAAATAAAAAATGAAT
1 AAAAAAATAAAAAATGAAC
*
26656511 AAAATAAAT-AAAAATGGAC
1 AAAA-AAATAAAAAATGAAC
26656530 AAAAAA
1 AAAAAA
26656536 GGATTTGGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
18 2 0.09
19 16 0.73
20 4 0.18
ACGTcount: A:0.77, C:0.02, G:0.07, T:0.14
Consensus pattern (19 bp):
AAAAAAATAAAAAATGAAC
Found at i:26656801 original size:14 final size:14
Alignment explanation
Indices: 26656768--26656816 Score: 62
Period size: 14 Copynumber: 3.4 Consensus size: 14
26656758 CTTCCTTGCA
*
26656768 GGTGTCAGAGGAGTT
1 GGTGGCAGA-GAGTT
*
26656783 GGTGGCAGAGAGCT
1 GGTGGCAGAGAGTT
*
26656797 GGTGGCAGAGGGTT
1 GGTGGCAGAGAGTT
26656811 GGTGGC
1 GGTGGC
26656817 TGAAGACCCT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 22 0.73
15 8 0.27
ACGTcount: A:0.16, C:0.10, G:0.53, T:0.20
Consensus pattern (14 bp):
GGTGGCAGAGAGTT
Found at i:26657580 original size:23 final size:22
Alignment explanation
Indices: 26657553--26657636 Score: 102
Period size: 21 Copynumber: 3.9 Consensus size: 22
26657543 TTTGCCAATT
*
26657553 AGGCACTTTATGTGTCTTATCTC
1 AGGCACTTTATGTGTCGTAT-TC
26657576 AGGCACTTTATGTGTCGTA-TC
1 AGGCACTTTATGTGTCGTATTC
* **
26657597 AGGCACCTCGTGTGTCGT-TTC
1 AGGCACTTTATGTGTCGTATTC
26657618 AGGCAC-TTATGTGTCGTAT
1 AGGCACTTTATGTGTCGTAT
26657637 ACTGATCAGG
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
20 9 0.17
21 26 0.49
23 18 0.34
ACGTcount: A:0.17, C:0.21, G:0.24, T:0.38
Consensus pattern (22 bp):
AGGCACTTTATGTGTCGTATTC
Found at i:26664083 original size:20 final size:20
Alignment explanation
Indices: 26664050--26664099 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
26664040 TTGTACAGGT
* * *
26664050 TTAATAAATTTATTTAAAAA
1 TTAATTAATATATTGAAAAA
26664070 TTAATTAATATATTGAAAAA
1 TTAATTAATATATTGAAAAA
26664090 TTAATGTAAT
1 TTAAT-TAAT
26664100 TATAAAATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 22 0.85
21 4 0.15
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.44
Consensus pattern (20 bp):
TTAATTAATATATTGAAAAA
Found at i:26664573 original size:15 final size:16
Alignment explanation
Indices: 26664540--26664574 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
26664530 TAAGCTTAAT
*
26664540 AATTTAATAATTATTA
1 AATTTAATAATTATAA
26664556 AATTTAAT-ATTATAA
1 AATTTAATAATTATAA
26664571 AATT
1 AATT
26664575 AAAAGTTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
AATTTAATAATTATAA
Found at i:26672028 original size:19 final size:19
Alignment explanation
Indices: 26672006--26672054 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
26671996 CAGCACAATA
*
26672006 TGCTGATGTGGATGCACTT
1 TGCTGATGTGGACGCACTT
* *
26672025 TGCTAATGTGGACGCGCTT
1 TGCTGATGTGGACGCACTT
*
26672044 TGTTGATGTGG
1 TGCTGATGTGG
26672055 CAAAATCGCT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.14, C:0.14, G:0.35, T:0.37
Consensus pattern (19 bp):
TGCTGATGTGGACGCACTT
Found at i:26673118 original size:53 final size:53
Alignment explanation
Indices: 26673037--26673138 Score: 177
Period size: 53 Copynumber: 1.9 Consensus size: 53
26673027 TATTGGAAAT
* *
26673037 ATTGTATCGAGAGATGTGTGGGGCGACACCACCAAATAAAGCCAAAATCCAAC
1 ATTGTACCGAGAGATGTGCGGGGCGACACCACCAAATAAAGCCAAAATCCAAC
*
26673090 ATTGTACCGAGAGATGTGCGGGGTGACACCACCAAATAAAGCCAAAATC
1 ATTGTACCGAGAGATGTGCGGGGCGACACCACCAAATAAAGCCAAAATC
26673139 GGAGGTTGCC
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
53 46 1.00
ACGTcount: A:0.37, C:0.23, G:0.24, T:0.17
Consensus pattern (53 bp):
ATTGTACCGAGAGATGTGCGGGGCGACACCACCAAATAAAGCCAAAATCCAAC
Found at i:26673825 original size:15 final size:14
Alignment explanation
Indices: 26673798--26673827 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
26673788 CGGGATCACT
26673798 ACTAATATAATCTA
1 ACTAATATAATCTA
26673812 ACTAATACTAATCTA
1 ACTAATA-TAATCTA
26673827 A
1 A
26673828 TACTAATAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (14 bp):
ACTAATATAATCTA
Found at i:26673829 original size:11 final size:11
Alignment explanation
Indices: 26673797--26673834 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
26673787 CCGGGATCAC
*
26673797 TACTAATATAA
1 TACTAATCTAA
26673808 T-CTAA-CTAA
1 TACTAATCTAA
26673817 TACTAATCTAA
1 TACTAATCTAA
26673828 TACTAAT
1 TACTAAT
26673835 AGAATAGAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
9 4 0.17
10 8 0.33
11 12 0.50
ACGTcount: A:0.47, C:0.16, G:0.00, T:0.37
Consensus pattern (11 bp):
TACTAATCTAA
Found at i:26674556 original size:18 final size:18
Alignment explanation
Indices: 26674529--26674564 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
26674519 TGCCAGGTGC
*
26674529 GTATCCTAACCCTTATAT
1 GTATCATAACCCTTATAT
26674547 GTATCATAACCCTTATAT
1 GTATCATAACCCTTATAT
26674565 ATTTCATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.25, G:0.06, T:0.39
Consensus pattern (18 bp):
GTATCATAACCCTTATAT
Found at i:26674571 original size:18 final size:18
Alignment explanation
Indices: 26674530--26674571 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
26674520 GCCAGGTGCG
* *
26674530 TATCCTAACCCTTATATG
1 TATCATAACCCTTATATA
26674548 TATCATAACCCTTATATA
1 TATCATAACCCTTATATA
*
26674566 TTTCAT
1 TATCAT
26674572 TTTCCCAGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.31, C:0.24, G:0.02, T:0.43
Consensus pattern (18 bp):
TATCATAACCCTTATATA
Found at i:26675047 original size:62 final size:60
Alignment explanation
Indices: 26674927--26675051 Score: 162
Period size: 62 Copynumber: 2.0 Consensus size: 60
26674917 TATATTTGTA
* * ***
26674927 CAAATTGTTTTTATATTCTTTCATTTAATAAAATAAAAGTTGTTTTGAATATTTTAATAG
1 CAAATTATTTTTATATTCTTTCATTTAATAAAATAAAAGTTCTTTTGAATAAGGTAATAG
*
26674987 CAAATTATTTTTATATT-TTGTCTTATTTAATAAAATAGAAGTTCTTTTGAATAAGGTAATAG
1 CAAATTATTTTTATATTCTT-TC--ATTTAATAAAATAAAAGTTCTTTTGAATAAGGTAATAG
26675049 CAA
1 CAA
26675052 TAATGCAACA
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
59 2 0.04
60 18 0.32
62 36 0.64
ACGTcount: A:0.38, C:0.06, G:0.10, T:0.47
Consensus pattern (60 bp):
CAAATTATTTTTATATTCTTTCATTTAATAAAATAAAAGTTCTTTTGAATAAGGTAATAG
Found at i:26678290 original size:126 final size:126
Alignment explanation
Indices: 26678065--26678585 Score: 706
Period size: 126 Copynumber: 4.1 Consensus size: 126
26678055 GGCCAAACAG
* * * * *
26678065 GAACTACTGTAGAAAAAGAACGTCTATGTGGGAGCCTTTTTCAGTAATTTTGCTGACAGTGCATA
1 GAACTACTGTAGAAAAAGAGCGTCTACGTGGGAGCTTTTTTCAGTAATTTTGCTGATAGTGCATC
* * ** * * * *
26678130 TTGCTTGAAGTATTTTTGACACTATTTTTTCAGAACTGCCTTCTCAAAATTATTTTTAT-AA
66 CTGCTTAAAGCGTTTTTGACATTATCTTTTCAGAACCGTCTTCTCAAAATTATTTTT-TCAA
*
26678191 GAACTACTGTAGAAAAAGAGCGT-TCACGTGGGAGCTTTTTTCAGTAATTTTGCTGATAATGCAT
1 GAACTACTGTAGAAAAAGAGCGTCT-ACGTGGGAGCTTTTTTCAGTAATTTTGCTGATAGTGCAT
* * * *
26678255 CCTGCTTGAAGCTTTTTTGACATTATTTTTTCAGAACCGTTTTCTCAAAATTATTTTTTCAA
65 CCTGCTTAAAGCGTTTTTGACATTATCTTTTCAGAACCGTCTTCTCAAAATTATTTTTTCAA
* * * *
26678317 GAACTACTGTAGAAAAAGAGCATCCACGTAGGAGCTTTTTTCATTAATTTTGCTGATAGTGCATC
1 GAACTACTGTAGAAAAAGAGCGTCTACGTGGGAGCTTTTTTCAGTAATTTTGCTGATAGTGCATC
* *
26678382 TTGCTTAAAGCGTTTTTGACATTATCTTTTCAGAACCGTCTTCTCAAAATTATTTTTTCAG
66 CTGCTTAAAGCGTTTTTGACATTATCTTTTCAGAACCGTCTTCTCAAAATTATTTTTTCAA
* * * *
26678443 GAACTACTATAGAAAAATAGCGTCTACGTGAGAGCTTTTTTCAGTAATTTTGCTGATGGTGCATC
1 GAACTACTGTAGAAAAAGAGCGTCTACGTGGGAGCTTTTTTCAGTAATTTTGCTGATAGTGCATC
* * *
26678508 CTACTTAAAGCGTTTTTGACATTATCTTTTCAGAACCGTCTTCTCAAAATTAATTTTTC-T
66 CTGCTTAAAGCGTTTTTGACATTATCTTTTCAGAACCGTCTTCTCAAAATTATTTTTTCAA
*
26678568 GAAACTACTATAGAAAAA
1 G-AACTACTGTAGAAAAA
26678586 AATCTTTCTT
Statistics
Matches: 355, Mismatches: 36, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
125 3 0.01
126 352 0.99
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.39
Consensus pattern (126 bp):
GAACTACTGTAGAAAAAGAGCGTCTACGTGGGAGCTTTTTTCAGTAATTTTGCTGATAGTGCATC
CTGCTTAAAGCGTTTTTGACATTATCTTTTCAGAACCGTCTTCTCAAAATTATTTTTTCAA
Found at i:26678727 original size:34 final size:34
Alignment explanation
Indices: 26678680--26678769 Score: 144
Period size: 34 Copynumber: 2.6 Consensus size: 34
26678670 TTTAAAAAAC
* * *
26678680 TAAACCCTGATTTAATTTATTTATTTAAAACCCT
1 TAAAACCTAATTTAATTAATTTATTTAAAACCCT
*
26678714 TAAAATCTAATTTAATTAATTTATTTAAAACCCT
1 TAAAACCTAATTTAATTAATTTATTTAAAACCCT
26678748 TAAAACCTAATTTAATTAATTT
1 TAAAACCTAATTTAATTAATTT
26678770 TTAGAAAAAT
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 51 1.00
ACGTcount: A:0.41, C:0.13, G:0.01, T:0.44
Consensus pattern (34 bp):
TAAAACCTAATTTAATTAATTTATTTAAAACCCT
Found at i:26688317 original size:51 final size:51
Alignment explanation
Indices: 26688197--26688435 Score: 261
Period size: 51 Copynumber: 4.7 Consensus size: 51
26688187 AAAGTGATGA
* * * ***
26688197 TCACATGTGCAGTACTATGTGAAGGCTACTACGTGTACCGGA-A-TGAAAGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGT-TTTGG
* * * * *
26688247 TCTCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATAGTTTTGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTTTTGG
* * *
26688298 TCACGTGTGTAGTACTATGTGCAGGCTACTACATGTATCGGATA-TTAATGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTT-TTGG
* * *
26688349 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGAACCGGAAAG-TTTGA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTTTTGG
* *
26688399 TCACGTGTGTAGTATTATGTGAAGGCTACTACGTGTA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTA
26688436 TTGAATGATA
Statistics
Matches: 159, Mismatches: 26, Indels: 8
0.82 0.13 0.04
Matches are distributed among these distances:
50 74 0.47
51 84 0.53
52 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.31
Consensus pattern (51 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTTTTGG
Found at i:26688436 original size:101 final size:101
Alignment explanation
Indices: 26688194--26688436 Score: 326
Period size: 101 Copynumber: 2.4 Consensus size: 101
26688184 GTGAAAGTGA
* * * *
26688194 TGATCACATGTGCAGTACTATGTGAAGGCTACTACGTGTACCGGAATGAAAGGTCTCATGTGTAG
1 TGATCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGGAATGAAAGGTCACATGTGTAG
* * *
26688259 TACTATGTGCAGGCTACTATGCGTACCAGATAGTTT
66 TACTATGTGCAGGCTACTACGCGAACCAGAAAGTTT
* * * * * *
26688295 TGGTCACGTGTGTAGTACTATGTGCAGGCTACTACATGTATCGGATATTAATGGTCACGTGTGTA
1 TGATCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGGA-ATGAAAGGTCACATGTGTA
* *
26688360 GTACTATGTGCAGGCTACTACGTGAACCGGAAAG-TT
65 GTACTATGTGCAGGCTACTACGCGAACCAGAAAGTTT
*
26688396 TGATCACGTGTGTAGTATTATGTGAAGGCTACTACGTGTAT
1 TGATCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTAT
26688437 TGAATGATAA
Statistics
Matches: 122, Mismatches: 19, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
101 78 0.64
102 44 0.36
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (101 bp):
TGATCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGGAATGAAAGGTCACATGTGTAG
TACTATGTGCAGGCTACTACGCGAACCAGAAAGTTT
Found at i:26688465 original size:101 final size:100
Alignment explanation
Indices: 26688194--26688472 Score: 287
Period size: 101 Copynumber: 2.8 Consensus size: 100
26688184 GTGAAAGTGA
* * * * * *
26688194 TGATCACATGTGCAGTACTATGTGAAGGCTACTACGTGTACCGGAATGA-AAGGTCTCATGTGTA
1 TGATCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATC-GAATGATAATGT-TCACGTGTG
* * *
26688258 GTACTATGTGCAGGCTACTATGCGTACCAGATAGTTT
64 GTACTATGTGCAGGCTACTACGCGAACCAGAAAGTTT
* * * * *
26688295 TGGTCACGTGTGTAGTACTATGTGCAGGCTACTACATGTATCGGAT-ATTAATGGTCACGTGTGT
1 TGATCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAATGA-TAATGTTCACGTGTG-
* *
26688359 AGTACTATGTGCAGGCTACTACGTGAACCGGAAAG-TT
64 -GTACTATGTGCAGGCTACTACGCGAACCAGAAAGTTT
* *
26688396 TGATCACGTGTGTAGTATTATGTGAAGGCTACTACGTGTATTGAATGATAATAGTTACACAG-GT
1 TGATCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAATGATAAT-GTT-CAC-GTGT
*
26688460 GGTACTATATGCA
63 GGTACTATGTGCA
26688473 AACCACCGAA
Statistics
Matches: 146, Mismatches: 24, Indels: 16
0.78 0.13 0.09
Matches are distributed among these distances:
99 1 0.01
100 10 0.07
101 96 0.66
102 32 0.22
103 6 0.04
104 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (100 bp):
TGATCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAATGATAATGTTCACGTGTGGT
ACTATGTGCAGGCTACTACGCGAACCAGAAAGTTT
Found at i:26691004 original size:64 final size:64
Alignment explanation
Indices: 26690926--26691045 Score: 186
Period size: 64 Copynumber: 1.9 Consensus size: 64
26690916 ACGAGCATCC
* * * *
26690926 TGATCGGTATTGATCCTGCATGTGTTGCGGATATACCGCAGCTCTTTGTGAGCGTCTTGTTATA
1 TGATCGGTATTGATCCTGCATATATTGCGGACATACCGCAGCTCTTTATGAGCGTCTTGTTATA
* *
26690990 TGATCGGTATTGATCCTGCTTATATTGCGGACATACCGTAGCTCTTTATGAGCGTC
1 TGATCGGTATTGATCCTGCATATATTGCGGACATACCGCAGCTCTTTATGAGCGTC
26691046 CCAATATAGG
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
64 50 1.00
ACGTcount: A:0.18, C:0.20, G:0.25, T:0.37
Consensus pattern (64 bp):
TGATCGGTATTGATCCTGCATATATTGCGGACATACCGCAGCTCTTTATGAGCGTCTTGTTATA
Found at i:26691077 original size:25 final size:24
Alignment explanation
Indices: 26691030--26691082 Score: 61
Period size: 25 Copynumber: 2.2 Consensus size: 24
26691020 ACATACCGTA
26691030 GCTCTTTATGAGCGTCCCAATATAG
1 GCTCTTTATGAGCGTCCCAATAT-G
* * **
26691055 GCTCTTTGTGAGCTTCCTGATATG
1 GCTCTTTATGAGCGTCCCAATATG
26691079 GCTC
1 GCTC
26691083 ACTTGAACTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.17, C:0.25, G:0.23, T:0.36
Consensus pattern (24 bp):
GCTCTTTATGAGCGTCCCAATATG
Found at i:26696407 original size:21 final size:21
Alignment explanation
Indices: 26696364--26696435 Score: 76
Period size: 21 Copynumber: 3.5 Consensus size: 21
26696354 TAGATCGAGC
**
26696364 TTTATGGTTTAAGGATTATGG
1 TTTATGGTTTAAGGATTGGGG
*
26696385 TTTATGGTTTAAGGGTTGGGG
1 TTTATGGTTTAAGGATTGGGG
* *
26696406 TTTAGGGGTT-AGGATTAGGGG
1 TTTATGGTTTAAGGATT-GGGG
26696427 TTTA-GGTTT
1 TTTATGGTTT
26696436 TATGGTTTAT
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
20 9 0.21
21 34 0.79
ACGTcount: A:0.18, C:0.00, G:0.38, T:0.44
Consensus pattern (21 bp):
TTTATGGTTTAAGGATTGGGG
Found at i:26696459 original size:7 final size:7
Alignment explanation
Indices: 26696364--26696480 Score: 67
Period size: 7 Copynumber: 16.6 Consensus size: 7
26696354 TAGATCGAGC
*
26696364 TTTATGG
1 TTTAGGG
*
26696371 TTTAAGG
1 TTTAGGG
* *
26696378 ATTATGG
1 TTTAGGG
*
26696385 TTTATGG
1 TTTAGGG
26696392 TTTAAGGG
1 TTT-AGGG
*
26696400 -TTGGGG
1 TTTAGGG
26696406 TTTAGGG
1 TTTAGGG
*
26696413 GTTA-GG
1 TTTAGGG
*
26696419 ATTAGGGG
1 TTTA-GGG
*
26696427 TTTAGGT
1 TTTAGGG
*
26696434 TTTATGG
1 TTTAGGG
* *
26696441 TTTATGA
1 TTTAGGG
26696448 TTTAGGG
1 TTTAGGG
26696455 TTTAGGAG
1 TTTAGG-G
* *
26696463 ATAAGGG
1 TTTAGGG
26696470 TTTAGGG
1 TTTAGGG
26696477 TTTA
1 TTTA
26696481 ATTAGTGTTT
Statistics
Matches: 85, Mismatches: 20, Indels: 10
0.74 0.17 0.09
Matches are distributed among these distances:
6 8 0.09
7 64 0.75
8 13 0.15
ACGTcount: A:0.21, C:0.00, G:0.36, T:0.44
Consensus pattern (7 bp):
TTTAGGG
Found at i:26696630 original size:22 final size:22
Alignment explanation
Indices: 26696582--26696630 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
26696572 ATAATTTAGG
**
26696582 GTTTAAGGTTTAGGAGTTACTA
1 GTTTAAGGTTTAGGAGTTAAGA
*
26696604 TTTTAAGGTTTATGGA-TTAAGA
1 GTTTAAGGTTTA-GGAGTTAAGA
26696626 GTTTA
1 GTTTA
26696631 GAGATTATGG
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
22 19 0.86
23 3 0.14
ACGTcount: A:0.29, C:0.02, G:0.24, T:0.45
Consensus pattern (22 bp):
GTTTAAGGTTTAGGAGTTAAGA
Found at i:26696636 original size:15 final size:14
Alignment explanation
Indices: 26696606--26696647 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
26696596 AGTTACTATT
26696606 TTAAGGTTTATGGA
1 TTAAGGTTTATGGA
26696620 TTAAGAGTTTA-GAGA
1 TTAAG-GTTTATG-GA
*
26696635 TTATGGTTTATGG
1 TTAAGGTTTATGG
26696648 TTTATGGTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
14 12 0.50
15 12 0.50
ACGTcount: A:0.29, C:0.00, G:0.29, T:0.43
Consensus pattern (14 bp):
TTAAGGTTTATGGA
Found at i:26696684 original size:21 final size:21
Alignment explanation
Indices: 26696646--26696685 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
26696636 TATGGTTTAT
*
26696646 GGTTTATGGTGTAAGGGTTGG
1 GGTTTAAGGTGTAAGGGTTGG
* *
26696667 GGTTTAAGGTTTAGGGGTT
1 GGTTTAAGGTGTAAGGGTT
26696686 AAGAATTAAG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.15, C:0.00, G:0.45, T:0.40
Consensus pattern (21 bp):
GGTTTAAGGTGTAAGGGTTGG
Found at i:26697135 original size:19 final size:19
Alignment explanation
Indices: 26697108--26697156 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 19
26697098 AAATTATAAC
* *
26697108 AAATGAAAATGAAATGCAA
1 AAATAAAAATGAAATACAA
26697127 AAATAAAAATGAAATACAA
1 AAATAAAAATGAAATACAA
26697146 AAACTAAAAAT
1 AAA-TAAAAAT
26697157 TATAATGTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
19 20 0.74
20 7 0.26
ACGTcount: A:0.69, C:0.06, G:0.08, T:0.16
Consensus pattern (19 bp):
AAATAAAAATGAAATACAA
Found at i:26699792 original size:19 final size:19
Alignment explanation
Indices: 26699763--26699816 Score: 81
Period size: 19 Copynumber: 2.8 Consensus size: 19
26699753 AATTTTTGAG
*
26699763 GATATGCAATCTTAGATAT
1 GATATACAATCTTAGATAT
*
26699782 GATATATAATCTTAGATAT
1 GATATACAATCTTAGATAT
*
26699801 GATATGCAATCTTAGA
1 GATATACAATCTTAGA
26699817 ATATATGATT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.39, C:0.09, G:0.15, T:0.37
Consensus pattern (19 bp):
GATATACAATCTTAGATAT
Found at i:26700324 original size:25 final size:25
Alignment explanation
Indices: 26700295--26700348 Score: 83
Period size: 25 Copynumber: 2.2 Consensus size: 25
26700285 CTTTTACTTT
*
26700295 TATTTATTTGCGGATTTAC-CCTAGA
1 TATTTATTTACGGATTTACTCC-AGA
26700320 TATTTATTTACGGATTTACTCCAGA
1 TATTTATTTACGGATTTACTCCAGA
26700345 TATT
1 TATT
26700349 GTAATTGCAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 25 0.93
26 2 0.07
ACGTcount: A:0.26, C:0.15, G:0.13, T:0.46
Consensus pattern (25 bp):
TATTTATTTACGGATTTACTCCAGA
Found at i:26701284 original size:98 final size:98
Alignment explanation
Indices: 26701169--26701365 Score: 358
Period size: 98 Copynumber: 2.0 Consensus size: 98
26701159 TTTAAAATAA
* * *
26701169 TAAAGGAAATATTCCGAGTTTGGGATTTTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGAAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
26701234 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
*
26701267 TAAAGAAAATATTCCGAGTTTGGGATTCTAGAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGAAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
26701332 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
26701365 T
1 T
26701366 TTTATTGTAT
Statistics
Matches: 95, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 95 1.00
ACGTcount: A:0.28, C:0.10, G:0.24, T:0.37
Consensus pattern (98 bp):
TAAAGAAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
Found at i:26702856 original size:86 final size:86
Alignment explanation
Indices: 26702711--26702934 Score: 265
Period size: 86 Copynumber: 2.6 Consensus size: 86
26702701 ATTTGGTACT
* * ** *
26702711 TTTAGCGGCGTTTGTAATAAAAGTGCCGCTAAAGGTTATGTTCTTTAGCGGCGTTTGTGATAAAA
1 TTTAGTGGCGTTTGTGATAAAAGTGTAGCTAAAGGTTATGCTCTTTAGCGGCGTTTGTGATAAAA
* *
26702776 ACATTGCTAAATG-TTATGTTC
66 ACATCGCTAAA-GATCATGTTC
26702797 TTTAGTGGCGTTTGTGATAAAAGTGTAGCTAAAGGTTATGCTCTTTAGCGGCGTTTGTGATAAAA
1 TTTAGTGGCGTTTGTGATAAAAGTGTAGCTAAAGGTTATGCTCTTTAGCGGCGTTTGTGATAAAA
* *
26702862 GCGTCGCTAAAGATCATGTTC
66 ACATCGCTAAAGATCATGTTC
* * * * * *
26702883 TTTAATGGCATTTGTGGGT-ATAGTGTTA-CTAAAGGTCATGCTCTATAGCGGC
1 TTTAGTGGCGTTTGT-GATAAAAGTG-TAGCTAAAGGTTATGCTCTTTAGCGGC
26702935 ATTTTTGTCA
Statistics
Matches: 120, Mismatches: 15, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
85 1 0.01
86 115 0.96
87 4 0.03
ACGTcount: A:0.25, C:0.13, G:0.25, T:0.36
Consensus pattern (86 bp):
TTTAGTGGCGTTTGTGATAAAAGTGTAGCTAAAGGTTATGCTCTTTAGCGGCGTTTGTGATAAAA
ACATCGCTAAAGATCATGTTC
Found at i:26702898 original size:43 final size:43
Alignment explanation
Indices: 26702711--26702886 Score: 235
Period size: 43 Copynumber: 4.1 Consensus size: 43
26702701 ATTTGGTACT
* * *
26702711 TTTAGCGGCGTTTGTAATAAAAGTGCCGCTAAAGGTTATGTTC
1 TTTAGCGGCGTTTGTGATAAAAGCGTCGCTAAAGGTTATGTTC
* * * *
26702754 TTTAGCGGCGTTTGTGATAAAAACATTGCTAAATGTTATGTTC
1 TTTAGCGGCGTTTGTGATAAAAGCGTCGCTAAAGGTTATGTTC
* * * *
26702797 TTTAGTGGCGTTTGTGATAAAAGTGTAGCTAAAGGTTATGCTC
1 TTTAGCGGCGTTTGTGATAAAAGCGTCGCTAAAGGTTATGTTC
* *
26702840 TTTAGCGGCGTTTGTGATAAAAGCGTCGCTAAAGATCATGTTC
1 TTTAGCGGCGTTTGTGATAAAAGCGTCGCTAAAGGTTATGTTC
26702883 TTTA
1 TTTA
26702887 ATGGCATTTG
Statistics
Matches: 113, Mismatches: 20, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 113 1.00
ACGTcount: A:0.26, C:0.12, G:0.24, T:0.37
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGATAAAAGCGTCGCTAAAGGTTATGTTC
Found at i:26703196 original size:32 final size:32
Alignment explanation
Indices: 26703136--26703198 Score: 81
Period size: 32 Copynumber: 2.0 Consensus size: 32
26703126 ATTAATCAAT
* *
26703136 ATGAGTTATCAAATTAAATTAATTAATTTATC
1 ATGAGTTATCAAATTAAAGTAATCAATTTATC
** *
26703168 ATGAGTTATTGAATTCAAGTAATCAATTTAT
1 ATGAGTTATCAAATTAAAGTAATCAATTTAT
26703199 AAGTTTATGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.41, C:0.06, G:0.10, T:0.43
Consensus pattern (32 bp):
ATGAGTTATCAAATTAAAGTAATCAATTTATC
Found at i:26705510 original size:14 final size:13
Alignment explanation
Indices: 26705491--26705520 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
26705481 TCAATTTTGC
26705491 ATCTAGTTAAATTA
1 ATCTAGTTAAA-TA
26705505 ATCTAGTTAAATA
1 ATCTAGTTAAATA
26705518 ATC
1 ATC
26705521 ATCACTCAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.31
14 11 0.69
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.40
Consensus pattern (13 bp):
ATCTAGTTAAATA
Found at i:26710547 original size:29 final size:29
Alignment explanation
Indices: 26710513--26710585 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 29
26710503 TCATCGATGA
26710513 ATGAAAATGGATGGATTT-AACCATCGACT
1 ATGAAAATGGATGG-TTTCAACCATCGACT
* * *
26710542 ATGAAAATGGATAGTTTCAACTATCGATT
1 ATGAAAATGGATGGTTTCAACCATCGACT
*
26710571 ATGAAAAGGGATGGT
1 ATGAAAATGGATGGT
26710586 AACGGCCATC
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
28 3 0.08
29 35 0.92
ACGTcount: A:0.38, C:0.10, G:0.23, T:0.29
Consensus pattern (29 bp):
ATGAAAATGGATGGTTTCAACCATCGACT
Found at i:26710650 original size:29 final size:28
Alignment explanation
Indices: 26710618--26710707 Score: 108
Period size: 29 Copynumber: 3.1 Consensus size: 28
26710608 AGTTTTGACA
26710618 ATCAAATATAAAAATGGATGGTGACGACC
1 ATCAAATAT-AAAATGGATGGTGACGACC
* *
26710647 ATCAACTATGAAAAGGGATGGTGACGACC
1 ATCAAATAT-AAAATGGATGGTGACGACC
* * *
26710676 ATCGAATATGAAATGGGATGGTTACGACC
1 ATCAAATATAAAAT-GGATGGTGACGACC
26710705 ATC
1 ATC
26710708 CTTAGCACAC
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
28 3 0.06
29 49 0.94
ACGTcount: A:0.39, C:0.16, G:0.24, T:0.21
Consensus pattern (28 bp):
ATCAAATATAAAATGGATGGTGACGACC
Found at i:26713765 original size:87 final size:87
Alignment explanation
Indices: 26713602--26713828 Score: 314
Period size: 87 Copynumber: 2.6 Consensus size: 87
26713592 ACGGTGTATC
* ** * * *
26713602 GACGATCATCGATTAATGAAAAGGGATGGAT-TTGACCATTGACTATGAAAAGGGATAGTTTTGA
1 GACGACCATCGATTAATGAAAAGGGATGG-TGACGACCATCGA-TATGAAAAGAGATAGTTTCGA
* *
26713666 CTATCGATTATGAAAAGGGATGGT
64 CTATCAAATATGAAAAGGGATGGT
*
26713690 GACGACCATCAATT-ATGAAAAGGGATGGTGACGACCATCGTATATGAAAAGAGATAGTTTCGAC
1 GACGACCATCGATTAATGAAAAGGGATGGTGACGACCATCG-ATATGAAAAGAGATAGTTTCGAC
26713754 TATCAAATATGAAAAGGGATGGT
65 TATCAAATATGAAAAGGGATGGT
*
26713777 GACGACCATCGATTAATGAAAAGGGATGGTGACGGCCATCGAATATGAAAAG
1 GACGACCATCGATTAATGAAAAGGGATGGTGACGACCATCG-ATATGAAAAG
26713829 GGATGGTTAC
Statistics
Matches: 124, Mismatches: 12, Indels: 6
0.87 0.08 0.04
Matches are distributed among these distances:
86 1 0.01
87 75 0.60
88 48 0.39
ACGTcount: A:0.37, C:0.12, G:0.27, T:0.24
Consensus pattern (87 bp):
GACGACCATCGATTAATGAAAAGGGATGGTGACGACCATCGATATGAAAAGAGATAGTTTCGACT
ATCAAATATGAAAAGGGATGGT
Found at i:26713782 original size:29 final size:29
Alignment explanation
Indices: 26713602--26713846 Score: 242
Period size: 29 Copynumber: 8.4 Consensus size: 29
26713592 ACGGTGTATC
* *
26713602 GACGATCATCGATTAATGAAAAGGGATGGAT
1 GACGACCATCGAAT-ATGAAAAGGGATGG-T
** * * *
26713633 -TTGACCATTGACTATGAAAAGGGATAGT
1 GACGACCATCGAATATGAAAAGGGATGGT
*** * *
26713661 TTTGACTATCGATTATGAAAAGGGATGGT
1 GACGACCATCGAATATGAAAAGGGATGGT
26713690 GACGACCATC-AATTATGAAAAGGGATGGT
1 GACGACCATCGAA-TATGAAAAGGGATGGT
* * *
26713719 GACGACCATCGTATATGAAAAGAGATAGT
1 GACGACCATCGAATATGAAAAGGGATGGT
** * *
26713748 TTCGACTATCAAATATGAAAAGGGATGGT
1 GACGACCATCGAATATGAAAAGGGATGGT
*
26713777 GACGACCATCGATTAATGAAAAGGGATGGT
1 GACGACCATCGAAT-ATGAAAAGGGATGGT
*
26713807 GACGGCCATCGAATATGAAAAGGGATGGT
1 GACGACCATCGAATATGAAAAGGGATGGT
*
26713836 TACGACCATCG
1 GACGACCATCG
26713847 TTAGCACACT
Statistics
Matches: 176, Mismatches: 34, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
28 2 0.01
29 138 0.78
30 36 0.20
ACGTcount: A:0.36, C:0.13, G:0.27, T:0.24
Consensus pattern (29 bp):
GACGACCATCGAATATGAAAAGGGATGGT
Found at i:26714876 original size:13 final size:13
Alignment explanation
Indices: 26714858--26714888 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
26714848 GCACACAAGG
26714858 GTGTGGCTTGGCC
1 GTGTGGCTTGGCC
*
26714871 GTGTGGCTTGGCT
1 GTGTGGCTTGGCC
26714884 GTGTG
1 GTGTG
26714889 ACCTAAGTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.00, C:0.16, G:0.48, T:0.35
Consensus pattern (13 bp):
GTGTGGCTTGGCC
Found at i:26737799 original size:27 final size:27
Alignment explanation
Indices: 26737768--26737831 Score: 94
Period size: 26 Copynumber: 2.4 Consensus size: 27
26737758 TCAGAAAAAG
*
26737768 GCCTTTGTGGCGTAATATGAAA-GAAA
1 GCCTTTGTGGCGGAATATGAAAGGAAA
* *
26737794 GCCCTTGTGGCGGAATATGAAAGGAAT
1 GCCTTTGTGGCGGAATATGAAAGGAAA
26737821 GCCTTTGTGGC
1 GCCTTTGTGGC
26737832 AAAATTTGTA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
26 20 0.61
27 13 0.39
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.27
Consensus pattern (27 bp):
GCCTTTGTGGCGGAATATGAAAGGAAA
Found at i:26744643 original size:43 final size:42
Alignment explanation
Indices: 26744587--26744685 Score: 126
Period size: 43 Copynumber: 2.3 Consensus size: 42
26744577 ATGGCCTGAG
*
26744587 ACACGAGCGTGTGTCTCAGCCGTGTGACTTACACAGCCTAGCT
1 ACACG-GCGTGTGTCTCAGCCATGTGACTTACACAGCCTAGCT
* ** *
26744630 ACACGGCTGTGTGTCTCAGCCATGTGAGTTACATGGCTTAGCT
1 ACACGGC-GTGTGTCTCAGCCATGTGACTTACACAGCCTAGCT
26744673 ACACGGTCGTGTG
1 ACACGG-CGTGTG
26744686 ACCCTTACAG
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
42 2 0.04
43 46 0.94
44 1 0.02
ACGTcount: A:0.19, C:0.26, G:0.28, T:0.26
Consensus pattern (42 bp):
ACACGGCGTGTGTCTCAGCCATGTGACTTACACAGCCTAGCT
Found at i:26747909 original size:30 final size:29
Alignment explanation
Indices: 26747875--26747938 Score: 83
Period size: 30 Copynumber: 2.2 Consensus size: 29
26747865 AATTTTTGAT
**
26747875 AATTGGATTAAATCAAAATTTAATGTATAA
1 AATTGGACAAAATCAAAATTT-ATGTATAA
* *
26747905 AATTGTACAAAATCACAATTTATGTATAA
1 AATTGGACAAAATCAAAATTTATGTATAA
26747934 AATTG
1 AATTG
26747939 CACATTAGGT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
29 13 0.43
30 17 0.57
ACGTcount: A:0.48, C:0.06, G:0.09, T:0.36
Consensus pattern (29 bp):
AATTGGACAAAATCAAAATTTATGTATAA
Found at i:26747955 original size:30 final size:29
Alignment explanation
Indices: 26747884--26747942 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 29
26747874 TAATTGGATT
*
26747884 AAATCAAAATTTAATGTATAAAATTGTACA
1 AAATC-AAATTTAATGTATAAAATTGCACA
26747914 AAATCACAATTT-ATGTATAAAATTGCACA
1 AAATCA-AATTTAATGTATAAAATTGCACA
26747943 TTAGGTCAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 17 0.63
30 10 0.37
ACGTcount: A:0.51, C:0.10, G:0.07, T:0.32
Consensus pattern (29 bp):
AAATCAAATTTAATGTATAAAATTGCACA
Found at i:26752503 original size:36 final size:36
Alignment explanation
Indices: 26752463--26752531 Score: 120
Period size: 36 Copynumber: 1.9 Consensus size: 36
26752453 CAAAGGTTAC
*
26752463 AATTAAAAGTTGTATACAATTAGAACTCTAAGACAT
1 AATTAAAAGCTGTATACAATTAGAACTCTAAGACAT
*
26752499 AATTAGAAGCTGTATACAATTAGAACTCTAAGA
1 AATTAAAAGCTGTATACAATTAGAACTCTAAGA
26752532 TTAAATAATC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.46, C:0.12, G:0.13, T:0.29
Consensus pattern (36 bp):
AATTAAAAGCTGTATACAATTAGAACTCTAAGACAT
Found at i:26752504 original size:19 final size:17
Alignment explanation
Indices: 26752478--26752531 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
26752468 AAAGTTGTAT
26752478 ACAATTAGAACTCTAAG
1 ACAATTAGAACTCTAAG
* *
26752495 ACATAATTAGAAGCTGT-AT
1 AC--AATTAGAA-CTCTAAG
26752514 ACAATTAGAACTCTAAG
1 ACAATTAGAACTCTAAG
26752531 A
1 A
26752532 TTAAATAATC
Statistics
Matches: 29, Mismatches: 4, Indels: 8
0.71 0.10 0.20
Matches are distributed among these distances:
16 3 0.10
17 12 0.41
19 11 0.38
20 3 0.10
ACGTcount: A:0.46, C:0.15, G:0.13, T:0.26
Consensus pattern (17 bp):
ACAATTAGAACTCTAAG
Found at i:26752521 original size:17 final size:17
Alignment explanation
Indices: 26752460--26752523 Score: 58
Period size: 17 Copynumber: 3.6 Consensus size: 17
26752450 CATCAAAGGT
* *
26752460 TACAATTAAAAGTTGTA
1 TACAATTAGAAGCTGTA
*
26752477 TACAATTAGAA-CTCTAA
1 TACAATTAGAAGCTGT-A
*
26752494 GACATAATTAGAAGCTGTA
1 TAC--AATTAGAAGCTGTA
26752513 TACAATTAGAA
1 TACAATTAGAA
26752524 CTCTAAGATT
Statistics
Matches: 37, Mismatches: 6, Indels: 8
0.73 0.12 0.16
Matches are distributed among these distances:
16 2 0.05
17 21 0.57
19 11 0.30
20 3 0.08
ACGTcount: A:0.47, C:0.11, G:0.12, T:0.30
Consensus pattern (17 bp):
TACAATTAGAAGCTGTA
Found at i:26757601 original size:17 final size:17
Alignment explanation
Indices: 26757579--26757642 Score: 67
Period size: 17 Copynumber: 3.6 Consensus size: 17
26757569 CATCAAAGGC
*
26757579 TACAATTAAAAGCTGTA
1 TACAATTAGAAGCTGTA
*
26757596 TACAATTAGAA-CTCTAA
1 TACAATTAGAAGCTGT-A
*
26757613 GACATAATTAGAAGCTGTA
1 TAC--AATTAGAAGCTGTA
26757632 TACAATTAGAA
1 TACAATTAGAA
26757643 CTCTAAGATT
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
16 3 0.08
17 21 0.55
19 11 0.29
20 3 0.08
ACGTcount: A:0.47, C:0.12, G:0.12, T:0.28
Consensus pattern (17 bp):
TACAATTAGAAGCTGTA
Found at i:26757623 original size:19 final size:17
Alignment explanation
Indices: 26757597--26757650 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
26757587 AAAGCTGTAT
26757597 ACAATTAGAACTCTAAG
1 ACAATTAGAACTCTAAG
* *
26757614 ACATAATTAGAAGCTGT-AT
1 AC--AATTAGAA-CTCTAAG
26757633 ACAATTAGAACTCTAAG
1 ACAATTAGAACTCTAAG
26757650 A
1 A
26757651 TTAAAAATCA
Statistics
Matches: 29, Mismatches: 4, Indels: 8
0.71 0.10 0.20
Matches are distributed among these distances:
16 3 0.10
17 12 0.41
19 11 0.38
20 3 0.10
ACGTcount: A:0.46, C:0.15, G:0.13, T:0.26
Consensus pattern (17 bp):
ACAATTAGAACTCTAAG
Found at i:26757629 original size:36 final size:36
Alignment explanation
Indices: 26757582--26757650 Score: 129
Period size: 36 Copynumber: 1.9 Consensus size: 36
26757572 CAAAGGCTAC
26757582 AATTAAAAGCTGTATACAATTAGAACTCTAAGACAT
1 AATTAAAAGCTGTATACAATTAGAACTCTAAGACAT
*
26757618 AATTAGAAGCTGTATACAATTAGAACTCTAAGA
1 AATTAAAAGCTGTATACAATTAGAACTCTAAGA
26757651 TTAAAAATCA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.46, C:0.13, G:0.13, T:0.28
Consensus pattern (36 bp):
AATTAAAAGCTGTATACAATTAGAACTCTAAGACAT
Found at i:26764119 original size:52 final size:53
Alignment explanation
Indices: 26764021--26764122 Score: 152
Period size: 52 Copynumber: 1.9 Consensus size: 53
26764011 TCCTTAAATT
*
26764021 TTCCCATATGATGTCATAACCCACCAATTACGGTCTGACACAATATGGTCTCC
1 TTCCCATATGATGCCATAACCCACCAATTACGGTCTGACACAATATGGTCTCC
* * * *
26764074 TTCCCATATGAT-CCATAACCCACCAGTTACTGTCTTACACGATATGGTC
1 TTCCCATATGATGCCATAACCCACCAATTACGGTCTGACACAATATGGTC
26764123 CTTCAGTGTT
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
52 32 0.73
53 12 0.27
ACGTcount: A:0.27, C:0.30, G:0.13, T:0.29
Consensus pattern (53 bp):
TTCCCATATGATGCCATAACCCACCAATTACGGTCTGACACAATATGGTCTCC
Found at i:26765354 original size:17 final size:16
Alignment explanation
Indices: 26765334--26765398 Score: 53
Period size: 17 Copynumber: 4.0 Consensus size: 16
26765324 TATGTATATA
26765334 TAATAAATATATAAAAT
1 TAATAAATAT-TAAAAT
* *
26765351 TAATAATTATTAAAAA
1 TAATAAATATTAAAAT
* *
26765367 T-ATAAAAATTAAATT
1 TAATAAATATTAAAAT
26765382 TAATGATAATA-TAAAAT
1 TAAT-A-AATATTAAAAT
26765399 ATGTAGTGAC
Statistics
Matches: 37, Mismatches: 8, Indels: 6
0.73 0.16 0.12
Matches are distributed among these distances:
15 11 0.30
16 8 0.22
17 15 0.41
18 3 0.08
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.37
Consensus pattern (16 bp):
TAATAAATATTAAAAT
Found at i:26765776 original size:19 final size:18
Alignment explanation
Indices: 26765749--26765784 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
26765739 TGGATTTAGA
26765749 TTTAGATATATATTATATG
1 TTTAGATATATA-TATATG
*
26765768 TTTATATATATATATAT
1 TTTAGATATATATATAT
26765785 AAAACTCTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.56
Consensus pattern (18 bp):
TTTAGATATATATATATG
Found at i:26766028 original size:20 final size:19
Alignment explanation
Indices: 26766000--26766092 Score: 68
Period size: 20 Copynumber: 4.8 Consensus size: 19
26765990 AATAATTAAA
26766000 TAATCAAATATTAATAAAAAT
1 TAAT-AAATATT-ATAAAAAT
*
26766021 TAATAAATATT-TAACAA-
1 TAATAAATATTATAAAAAT
* *
26766038 TATTAAA-ATTGATATAAACT
1 TAATAAATATT-ATA-AAAAT
26766058 T-ATAAATATTATAAAAAT
1 TAATAAATATTATAAAAAT
* *
26766076 ATAACAAATATAATAAA
1 -TAATAAATATTATAAA
26766093 TTCTATAAAA
Statistics
Matches: 57, Mismatches: 8, Indels: 15
0.71 0.10 0.19
Matches are distributed among these distances:
16 3 0.05
17 6 0.11
18 11 0.19
19 10 0.18
20 23 0.40
21 4 0.07
ACGTcount: A:0.60, C:0.04, G:0.01, T:0.34
Consensus pattern (19 bp):
TAATAAATATTATAAAAAT
Found at i:26766092 original size:37 final size:37
Alignment explanation
Indices: 26765999--26766116 Score: 91
Period size: 37 Copynumber: 3.1 Consensus size: 37
26765989 AAATAATTAA
*
26765999 ATAATCAAATATTAATAAAAATTAATAAATATT-TAACAAT
1 ATAA-CAAATA-TAAT-AAAATT-ATAAATATTATAAAAAT
* *
26766039 ATTA-AAAT-TGATATAAACTTATAAATATTATAAAAAT
1 ATAACAAATAT-A-ATAAAATTATAAATATTATAAAAAT
*
26766076 ATAACAAATATAATAAATTCTATAAA-ATTAATAAAATAT
1 ATAACAAATATAATAAAAT-TATAAATATT-ATAAAA-AT
26766115 AT
1 AT
26766117 TTAAATTTTT
Statistics
Matches: 65, Mismatches: 5, Indels: 17
0.75 0.06 0.20
Matches are distributed among these distances:
36 10 0.15
37 24 0.37
38 23 0.35
39 5 0.08
40 3 0.05
ACGTcount: A:0.59, C:0.04, G:0.01, T:0.36
Consensus pattern (37 bp):
ATAACAAATATAATAAAATTATAAATATTATAAAAAT
Found at i:26770366 original size:20 final size:20
Alignment explanation
Indices: 26770341--26770378 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
26770331 TTTGTAGGTT
*
26770341 GGATTTTTTAGAGTTGAGTC
1 GGATTTTTTAAAGTTGAGTC
26770361 GGATTTTTTAAAGTTGAG
1 GGATTTTTTAAAGTTGAG
26770379 AGAAAATTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.24, C:0.03, G:0.29, T:0.45
Consensus pattern (20 bp):
GGATTTTTTAAAGTTGAGTC
Found at i:26771006 original size:13 final size:15
Alignment explanation
Indices: 26770990--26771023 Score: 54
Period size: 13 Copynumber: 2.4 Consensus size: 15
26770980 ATTTACTTTC
26770990 TTTATTTTTA-C-TT
1 TTTATTTTTAGCATT
26771003 TTTATTTTTAGCATT
1 TTTATTTTTAGCATT
26771018 TTTATT
1 TTTATT
26771024 GTCATTTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 10 0.53
14 1 0.05
15 8 0.42
ACGTcount: A:0.18, C:0.06, G:0.03, T:0.74
Consensus pattern (15 bp):
TTTATTTTTAGCATT
Found at i:26788681 original size:20 final size:20
Alignment explanation
Indices: 26788644--26788681 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
26788634 TATCAATGAT
*
26788644 ATATTTAATGAAATATATAC
1 ATATTTAATGAAAAATATAC
26788664 ATATTTAA-GCAAAAATAT
1 ATATTTAATG-AAAAATAT
26788682 TCAAGTTGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 1 0.06
20 15 0.94
ACGTcount: A:0.53, C:0.05, G:0.05, T:0.37
Consensus pattern (20 bp):
ATATTTAATGAAAAATATAC
Found at i:26791426 original size:6 final size:6
Alignment explanation
Indices: 26791415--26791441 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
26791405 GTTAATAAAG
26791415 ACACAT ACACAT ACACAT ACACAT ACA
1 ACACAT ACACAT ACACAT ACACAT ACA
26791442 TGCACACACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.52, C:0.33, G:0.00, T:0.15
Consensus pattern (6 bp):
ACACAT
Found at i:26796223 original size:23 final size:23
Alignment explanation
Indices: 26796196--26796250 Score: 56
Period size: 26 Copynumber: 2.3 Consensus size: 23
26796186 GTTGTGGATG
*
26796196 CTTAGAAGTTGTTAGCTAGGACT
1 CTTAGAAGTTGCTAGCTAGGACT
*
26796219 CTTAGGAGAAGTTGCTAGGTAGGACT
1 CTT---AGAAGTTGCTAGCTAGGACT
*
26796245 CCTAGA
1 CTTAGA
26796251 GTAAAATAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
23 6 0.23
26 20 0.77
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (23 bp):
CTTAGAAGTTGCTAGCTAGGACT
Found at i:26803176 original size:14 final size:13
Alignment explanation
Indices: 26803157--26803187 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
26803147 CTTTAAAAAC
26803157 AAAAAAAAATTCT
1 AAAAAAAAATTCT
*
26803170 AAAAAAAAATTTT
1 AAAAAAAAATTCT
26803183 AAAAA
1 AAAAA
26803188 GTTTCATGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.23
Consensus pattern (13 bp):
AAAAAAAAATTCT
Found at i:26803458 original size:16 final size:16
Alignment explanation
Indices: 26803437--26803467 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26803427 TTCAAATAAA
26803437 TTATATATAAATTTAT
1 TTATATATAAATTTAT
*
26803453 TTATATTTAAATTTA
1 TTATATATAAATTTA
26803468 AAATATTAGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
TTATATATAAATTTAT
Found at i:26804246 original size:14 final size:14
Alignment explanation
Indices: 26804229--26804257 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
26804219 ATTATCTAAT
26804229 GGTCTTATGAGAAG
1 GGTCTTATGAGAAG
26804243 GGTCTTATGAGAAG
1 GGTCTTATGAGAAG
26804257 G
1 G
26804258 ATCGCTTGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.07, G:0.38, T:0.28
Consensus pattern (14 bp):
GGTCTTATGAGAAG
Found at i:26813784 original size:17 final size:17
Alignment explanation
Indices: 26813762--26813796 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
26813752 CTTTTTTTTA
26813762 TATTTTTAATAAA-ATTT
1 TATTTTTAA-AAAGATTT
26813779 TATTTTTAAAAAGATTT
1 TATTTTTAAAAAGATTT
26813796 T
1 T
26813797 TCATAATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 3 0.18
17 14 0.82
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (17 bp):
TATTTTTAAAAAGATTT
Found at i:26814414 original size:22 final size:21
Alignment explanation
Indices: 26814389--26814450 Score: 63
Period size: 22 Copynumber: 2.9 Consensus size: 21
26814379 GAAATATAAA
26814389 AATAAAATATTTTAAATATTTT
1 AATAAAATA-TTTAAATATTTT
* **
26814411 AATATAAAAATAAAAATATTTT
1 AATA-AAATATTTAAATATTTT
*
26814433 AAT-ATATATTTAAATATT
1 AATAAAATATTTAAATATT
26814451 ATTCTTTTGA
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
20 11 0.34
22 17 0.53
23 4 0.12
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
AATAAAATATTTAAATATTTT
Found at i:26814417 original size:30 final size:31
Alignment explanation
Indices: 26814326--26814445 Score: 108
Period size: 31 Copynumber: 3.9 Consensus size: 31
26814316 ATTGAATAAC
*
26814326 AAAAA-AAAATATTTTAATATAATTTAATAT
1 AAAAATAAAATATTTTAATATATTTTAATAT
* ** *
26814356 -CAAATATTAT-TTTTAA-AT-TTCATGAAATAT
1 AAAAATAAAATATTTTAATATATT--T-TAATAT
26814386 AAAAATAAAATATTTTAA-ATATTTTAATAT
1 AAAAATAAAATATTTTAATATATTTTAATAT
26814416 AAAAATAAAAATATTTTAATATATATTTAA
1 AAAAAT-AAAATATTTTAATATAT-TTTAA
26814446 ATATTATTCT
Statistics
Matches: 71, Mismatches: 9, Indels: 17
0.73 0.09 0.18
Matches are distributed among these distances:
27 1 0.01
28 2 0.03
29 10 0.14
30 19 0.27
31 20 0.28
32 12 0.17
33 7 0.10
ACGTcount: A:0.55, C:0.02, G:0.01, T:0.42
Consensus pattern (31 bp):
AAAAATAAAATATTTTAATATATTTTAATAT
Found at i:26814483 original size:20 final size:21
Alignment explanation
Indices: 26814444--26814488 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 21
26814434 ATATATATTT
*
26814444 AAATATTATTCTTTTGATATA
1 AAATATTATTCTTTTAATATA
*
26814465 AAATATTATTC-TTTAATATT
1 AAATATTATTCTTTTAATATA
26814485 AAAT
1 AAAT
26814489 TGATGTGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 11 0.50
21 11 0.50
ACGTcount: A:0.42, C:0.04, G:0.02, T:0.51
Consensus pattern (21 bp):
AAATATTATTCTTTTAATATA
Found at i:26814487 original size:21 final size:22
Alignment explanation
Indices: 26814438--26814487 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 22
26814428 ATTTTAATAT
* *
26814438 ATATTTAAATATTATTCTTTTG
1 ATATTAAAATATTATTCTTTTA
26814460 ATA-TAAAATATTATTC-TTTA
1 ATATTAAAATATTATTCTTTTA
26814480 ATATTAAA
1 ATATTAAA
26814488 TTGATGTGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 6 0.24
21 16 0.64
22 3 0.12
ACGTcount: A:0.42, C:0.04, G:0.02, T:0.52
Consensus pattern (22 bp):
ATATTAAAATATTATTCTTTTA
Found at i:26816059 original size:44 final size:44
Alignment explanation
Indices: 26816005--26816093 Score: 117
Period size: 44 Copynumber: 2.0 Consensus size: 44
26815995 TGAAATAAAG
**
26816005 TAGAAATTGTGATAATTATGCATTTTAAATAAATTT-TAATTTAA
1 TAGAAATTGTGATAATTAAACATTTTAAA-AAATTTATAATTTAA
* * *
26816049 TAGAAGTTGTGATAATTAAATATTTTAAAATATTTATAATTTAA
1 TAGAAATTGTGATAATTAAACATTTTAAAAAATTTATAATTTAA
26816093 T
1 T
26816094 TTATAATTAT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
43 5 0.13
44 34 0.87
ACGTcount: A:0.44, C:0.01, G:0.09, T:0.46
Consensus pattern (44 bp):
TAGAAATTGTGATAATTAAACATTTTAAAAAATTTATAATTTAA
Found at i:26816208 original size:18 final size:19
Alignment explanation
Indices: 26816182--26816221 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
26816172 GGTAAAAGCT
* *
26816182 ATTATAATTA-TAATTTAA
1 ATTACAATTACTAATTAAA
26816200 ATTACAATTACTAATTAAA
1 ATTACAATTACTAATTAAA
26816219 ATT
1 ATT
26816222 GGTGTAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 9 0.47
19 10 0.53
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (19 bp):
ATTACAATTACTAATTAAA
Found at i:26831038 original size:41 final size:41
Alignment explanation
Indices: 26830993--26831215 Score: 401
Period size: 41 Copynumber: 5.4 Consensus size: 41
26830983 ACATATTCAT
* * *
26830993 CGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGTTCAC
1 CGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGATCAC
26831034 CGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGATCAC
1 CGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGATCAC
*
26831075 CGACACTTAGCCTGCTAGGTTTATAACCTGATTCAGATCAC
1 CGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGATCAC
26831116 CGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGATCAC
1 CGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGATCAC
*
26831157 CGACACTTAGCCTGCTAGGTTTATAACCTGATTCAGATCAC
1 CGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGATCAC
26831198 CGGCACTTAGCCTGCTAG
1 CGGCACTTAGCCTGCTAG
26831216 ACTTAAAGTC
Statistics
Matches: 175, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 175 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.29
Consensus pattern (41 bp):
CGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGATCAC
Found at i:26831269 original size:123 final size:123
Alignment explanation
Indices: 26831003--26831269 Score: 297
Period size: 123 Copynumber: 2.2 Consensus size: 123
26830993 CGGCACTTAG
* * * * *
26831003 CCTGCTAGGCTTATAGCCTGATTCAGTTCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTC
1 CCTGATAGGCCTAGAGCCTGATTCAGATCACCGACACTTAGCCTGCTAGGTTTATAACCTGATTC
** * * * *
26831068 AGATCACCGACACTTAGCCTGCTAGGTTTATAACCTGATTCAGATCACCGGCACTTAG
66 AGATCACCGACACTTAGCCTGCTAGACTTATAACCTGATTCAGATCACCGACAATAAA
* ** * *
26831126 CCTGCTAGGTTTATAACCTGATTCAGATCACCGACACTTAGCCTGCTAGGTTTATAACCTGATTC
1 CCTGATAGGCCTAGAGCCTGATTCAGATCACCGACACTTAGCCTGCTAGGTTTATAACCTGATTC
* * ** *
26831191 AGATCACCGGCACTTAGCCTGCTAGACTTA-AAGTCTGAATT-ATTTCACTGACAATAAA
66 AGATCACCGACACTTAGCCTGCTAGACTTATAA-CCTG-ATTCAGATCACCGACAATAAA
26831249 CCTGATAGGCCCT-GAGCCTGA
1 CCTGATAGG-CCTAGAGCCTGA
26831270 AAATCTCAAT
Statistics
Matches: 121, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
122 2 0.02
123 115 0.95
124 4 0.03
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.29
Consensus pattern (123 bp):
CCTGATAGGCCTAGAGCCTGATTCAGATCACCGACACTTAGCCTGCTAGGTTTATAACCTGATTC
AGATCACCGACACTTAGCCTGCTAGACTTATAACCTGATTCAGATCACCGACAATAAA
Found at i:26831932 original size:25 final size:25
Alignment explanation
Indices: 26831903--26831965 Score: 117
Period size: 25 Copynumber: 2.5 Consensus size: 25
26831893 ACAAGAATTT
26831903 ATACATATATATATTTTCGAACATG
1 ATACATATATATATTTTCGAACATG
*
26831928 ATACATAGATATATTTTCGAACATG
1 ATACATATATATATTTTCGAACATG
26831953 ATACATATATATA
1 ATACATATATATA
26831966 CATATCATTC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.43, C:0.11, G:0.08, T:0.38
Consensus pattern (25 bp):
ATACATATATATATTTTCGAACATG
Found at i:26834495 original size:15 final size:15
Alignment explanation
Indices: 26834475--26834506 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
26834465 CATTTCACTG
*
26834475 TTATGTCTTTTTTAT
1 TTATGTCTTTTATAT
26834490 TTATGTCTTTTATAT
1 TTATGTCTTTTATAT
26834505 TT
1 TT
26834507 TGCATGCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.06, G:0.06, T:0.72
Consensus pattern (15 bp):
TTATGTCTTTTATAT
Found at i:26836150 original size:37 final size:36
Alignment explanation
Indices: 26836097--26836256 Score: 127
Period size: 37 Copynumber: 4.4 Consensus size: 36
26836087 ATTGGAAAAA
*
26836097 TAATA-TTATTTTAATAGTTTAATATTAAATTATATT
1 TAATATTTATCTTAATAGTTTAATATTAAATTA-ATT
* *
26836133 TAATATTTATCTTAATAGTATT-TTATTAATTTAATAT
1 TAATATTTATCTTAATAGT-TTAATATTAAATTAAT-T
*
26836170 TAA-AGTGATTATCTTAATA-TTTAAT-TTAATTTAATT
1 TAATA-T--TTATCTTAATAGTTTAATATTAAATTAATT
* *
26836206 TAATGTTTAT-TTATCTAAGATTTAATATTAAATGTAATT
1 TAATATTTATCTTA-AT-AG-TTTAATATTAAAT-TAATT
26836245 TAA-ATTTATCTT
1 TAATATTTATCTT
26836257 GATAAATATT
Statistics
Matches: 101, Mismatches: 8, Indels: 27
0.74 0.06 0.20
Matches are distributed among these distances:
33 3 0.03
34 5 0.05
35 1 0.01
36 13 0.13
37 44 0.44
38 14 0.14
39 21 0.21
ACGTcount: A:0.39, C:0.03, G:0.04, T:0.54
Consensus pattern (36 bp):
TAATATTTATCTTAATAGTTTAATATTAAATTAATT
Found at i:26836155 original size:48 final size:51
Alignment explanation
Indices: 26836097--26836192 Score: 135
Period size: 48 Copynumber: 1.9 Consensus size: 51
26836087 ATTGGAAAAA
* * *
26836097 TAATATTATTTTAATAGTTTAATATTAAA-TTA-TAT-TTAATATTTATCT
1 TAATAGTATTTTAATAATTTAATATTAAAGTGATTATCTTAATATTTATCT
*
26836145 TAATAGTATTTTATTAATTTAATATTAAAGTGATTATCTTAATATTTA
1 TAATAGTATTTTAATAATTTAATATTAAAGTGATTATCTTAATATTTA
26836193 ATTTAATTTA
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
48 26 0.63
49 2 0.05
50 3 0.07
51 10 0.24
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.54
Consensus pattern (51 bp):
TAATAGTATTTTAATAATTTAATATTAAAGTGATTATCTTAATATTTATCT
Found at i:26836172 original size:11 final size:11
Alignment explanation
Indices: 26836097--26836236 Score: 57
Period size: 11 Copynumber: 12.8 Consensus size: 11
26836087 ATTGGAAAAA
*
26836097 TAATATTATTT
1 TAATATTAATT
26836108 TAATAGTTTAATAT
1 TAATA--TTAAT-T
26836122 TAA-ATTATATT
1 TAATATTA-ATT
*
26836133 TAATATTTATCT
1 TAATATTAAT-T
*
26836145 TAATAGT-ATT
1 TAATATTAATT
26836155 T--TATTAATT
1 TAATATTAATT
26836164 TAATATTAA--
1 TAATATTAATT
*
26836173 -AGTGATT-ATCT
1 TAAT-ATTAAT-T
26836184 TAATATTTAATT
1 TAATA-TTAATT
26836196 TAAT-TTAATT
1 TAATATTAATT
* *
26836206 TAATGTTTATT
1 TAATATTAATT
* *
26836217 T-ATCTAAGATT
1 TAATATTA-ATT
26836228 TAATATTAA
1 TAATATTAA
26836237 ATGTAATTTA
Statistics
Matches: 98, Mismatches: 12, Indels: 38
0.66 0.08 0.26
Matches are distributed among these distances:
8 6 0.06
9 7 0.07
10 15 0.15
11 34 0.35
12 25 0.26
13 7 0.07
14 4 0.04
ACGTcount: A:0.39, C:0.02, G:0.04, T:0.54
Consensus pattern (11 bp):
TAATATTAATT
Found at i:26842204 original size:8 final size:8
Alignment explanation
Indices: 26842184--26842214 Score: 53
Period size: 8 Copynumber: 3.8 Consensus size: 8
26842174 TTAGCATAGT
26842184 TTTTCATTA
1 TTTTCA-TA
26842193 TTTTCATA
1 TTTTCATA
26842201 TTTTCATA
1 TTTTCATA
26842209 TTTTCA
1 TTTTCA
26842215 AATAATAAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 16 0.73
9 6 0.27
ACGTcount: A:0.23, C:0.13, G:0.00, T:0.65
Consensus pattern (8 bp):
TTTTCATA
Found at i:26845216 original size:25 final size:25
Alignment explanation
Indices: 26845078--26845218 Score: 85
Period size: 24 Copynumber: 5.8 Consensus size: 25
26845068 AATCTATCTG
* *
26845078 GAGCTTCCCATTAT-TGGCTC-TTT
1 GAGCTTCCCGTTATATGGCTCATAT
* * *
26845101 GGAGCTACCTGTTAT-TAGCTCATAT
1 -GAGCTTCCCGTTATATGGCTCATAT
* * *
26845126 GAGCTTCCTG-AATATGGCTCTTAT
1 GAGCTTCCCGTTATATGGCTCATAT
* ** **
26845150 GAGCTTCCCGATATAAAGCTCGGAT
1 GAGCTTCCCGTTATATGGCTCATAT
* * * *
26845175 AAGC-TCCTGTTACATGGCTCACAT
1 GAGCTTCCCGTTATATGGCTCATAT
26845199 GAGCTTCCCGTTATATGGCT
1 GAGCTTCCCGTTATATGGCT
26845219 TGAGAGAGTG
Statistics
Matches: 87, Mismatches: 26, Indels: 7
0.73 0.22 0.06
Matches are distributed among these distances:
23 2 0.02
24 58 0.67
25 27 0.31
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.34
Consensus pattern (25 bp):
GAGCTTCCCGTTATATGGCTCATAT
Found at i:26846750 original size:50 final size:50
Alignment explanation
Indices: 26846622--26846918 Score: 346
Period size: 50 Copynumber: 5.8 Consensus size: 50
26846612 GATAATAACA
* ** * *
26846622 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTTCATGTAC--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAT-CGG
* * * * **
26846671 TGCCGATGACATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* ** *
26846721 TGCCTATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* * *
26846771 TGCCAATGCCATGTCCCAGACATGGTATCACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
26846821 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATGATCTCAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--TC--GG
*
26846876 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
26846919 TTACCCAAAT
Statistics
Matches: 213, Mismatches: 27, Indels: 9
0.86 0.11 0.04
Matches are distributed among these distances:
48 1 0.00
49 38 0.18
50 129 0.61
53 2 0.01
55 2 0.01
56 41 0.19
ACGTcount: A:0.22, C:0.28, G:0.23, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
Found at i:26849307 original size:15 final size:16
Alignment explanation
Indices: 26849278--26849316 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
26849268 CAAAAAGTTA
*
26849278 GAAATGAATACTATAT
1 GAAATGAATAATATAT
26849294 GAAAT-AATAATATAT
1 GAAATGAATAATATAT
26849309 -AAATGAAT
1 GAAATGAAT
26849317 TTTCAGGTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 4 0.19
15 12 0.57
16 5 0.24
ACGTcount: A:0.56, C:0.03, G:0.10, T:0.31
Consensus pattern (16 bp):
GAAATGAATAATATAT
Found at i:26850982 original size:16 final size:17
Alignment explanation
Indices: 26850942--26850982 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
26850932 TTTTTGGACT
26850942 ATTATTTTATTTTATTTG
1 ATTA-TTTATTTTATTTG
*
26850960 GTT-TTTATTTT-TTTG
1 ATTATTTATTTTATTTG
26850975 ATTATTTA
1 ATTATTTA
26850983 ATCTGCATGG
Statistics
Matches: 20, Mismatches: 2, Indels: 4
0.77 0.08 0.15
Matches are distributed among these distances:
15 6 0.30
16 12 0.60
18 2 0.10
ACGTcount: A:0.20, C:0.00, G:0.07, T:0.73
Consensus pattern (17 bp):
ATTATTTATTTTATTTG
Found at i:26852781 original size:3 final size:3
Alignment explanation
Indices: 26852769--26852806 Score: 58
Period size: 3 Copynumber: 12.7 Consensus size: 3
26852759 GTATTTTTTT
* *
26852769 TTA TTG TTA TTA TTA TTG TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
26852807 TGCACTATTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:26852786 original size:12 final size:12
Alignment explanation
Indices: 26852769--26852806 Score: 67
Period size: 12 Copynumber: 3.2 Consensus size: 12
26852759 GTATTTTTTT
26852769 TTATTGTTATTA
1 TTATTGTTATTA
26852781 TTATTGTTATTA
1 TTATTGTTATTA
*
26852793 TTATTATTATTA
1 TTATTGTTATTA
26852805 TT
1 TT
26852807 TGCACTATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.68
Consensus pattern (12 bp):
TTATTGTTATTA
Found at i:26854266 original size:18 final size:18
Alignment explanation
Indices: 26854243--26854287 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
26854233 CTAGTTCCTG
*
26854243 GTTTGATCAGTTCTTCTA
1 GTTTGATCAGTTCCTCTA
*
26854261 GTTTGATCAGTTCCTCTG
1 GTTTGATCAGTTCCTCTA
*
26854279 GTTCGATCA
1 GTTTGATCA
26854288 AATAAATTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.16, C:0.20, G:0.20, T:0.44
Consensus pattern (18 bp):
GTTTGATCAGTTCCTCTA
Found at i:26856139 original size:35 final size:34
Alignment explanation
Indices: 26856097--26856252 Score: 167
Period size: 32 Copynumber: 4.6 Consensus size: 34
26856087 TTGTCTTTTC
* *
26856097 TTGCAGGGAATATTTCCTATTCACGCATTATTCTA
1 TTGCAGGGAATCTTTCCTGTTCACGCATTATT-TA
* *
26856132 TTGCAGGGAATCTTTCCTGTTCA--CATCATTTC
1 TTGCAGGGAATCTTTCCTGTTCACGCATTATTTA
* *
26856164 TTGCAGGGAATCTCTCCTGTTCACGCATTATTTTG
1 TTGCAGGGAATCTTTCCTGTTCACGCATTA-TTTA
* * *
26856199 TTGCAGGGAATCTCTCCTGTTCA--CATCATTTC
1 TTGCAGGGAATCTTTCCTGTTCACGCATTATTTA
* *
26856231 TTGCAGGGAATCTCTCATGTTC
1 TTGCAGGGAATCTTTCCTGTTC
26856253 TTGTATTATT
Statistics
Matches: 108, Mismatches: 10, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
32 47 0.44
33 10 0.09
34 4 0.04
35 47 0.44
ACGTcount: A:0.20, C:0.24, G:0.17, T:0.39
Consensus pattern (34 bp):
TTGCAGGGAATCTTTCCTGTTCACGCATTATTTA
Found at i:26856173 original size:32 final size:33
Alignment explanation
Indices: 26856093--26856252 Score: 189
Period size: 35 Copynumber: 4.8 Consensus size: 33
26856083 TCACTTGTCT
* * * *
26856093 TTTCTTGCAGGGAATATTTCCTATTCACGCATTA
1 TTTCTTGCAGGGAATCTCTCCTGTTCAC-CATCA
* *
26856127 TTCTATTGCAGGGAATCTTTCCTGTTCA-CATCA
1 TT-TCTTGCAGGGAATCTCTCCTGTTCACCATCA
*
26856160 TTTCTTGCAGGGAATCTCTCCTGTTCACGCATTA
1 TTTCTTGCAGGGAATCTCTCCTGTTCAC-CATCA
*
26856194 TTTTGTTGCAGGGAATCTCTCCTGTTCA-CATCA
1 -TTTCTTGCAGGGAATCTCTCCTGTTCACCATCA
*
26856227 TTTCTTGCAGGGAATCTCTCATGTTC
1 TTTCTTGCAGGGAATCTCTCCTGTTC
26856253 TTGTATTATT
Statistics
Matches: 111, Mismatches: 11, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
32 47 0.42
33 10 0.09
34 6 0.05
35 48 0.43
ACGTcount: A:0.19, C:0.24, G:0.17, T:0.40
Consensus pattern (33 bp):
TTTCTTGCAGGGAATCTCTCCTGTTCACCATCA
Found at i:26856252 original size:67 final size:67
Alignment explanation
Indices: 26856093--26856252 Score: 257
Period size: 67 Copynumber: 2.4 Consensus size: 67
26856083 TCACTTGTCT
* * * *
26856093 TTTCTTGCAGGGAATATTTCCTATTCACGCATTATTCTATTGCAGGGAATCTTTCCTGTTCACAT
1 TTTCTTGCAGGGAATCTCTCCTGTTCACGCATTATTCTATTGCAGGGAATCTCTCCTGTTCACAT
26856158 CA
66 CA
* *
26856160 TTTCTTGCAGGGAATCTCTCCTGTTCACGCATTATTTTGTTGCAGGGAATCTCTCCTGTTCACAT
1 TTTCTTGCAGGGAATCTCTCCTGTTCACGCATTATTCTATTGCAGGGAATCTCTCCTGTTCACAT
26856225 CA
66 CA
*
26856227 TTTCTTGCAGGGAATCTCTCATGTTC
1 TTTCTTGCAGGGAATCTCTCCTGTTC
26856253 TTGTATTATT
Statistics
Matches: 86, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
67 86 1.00
ACGTcount: A:0.19, C:0.24, G:0.17, T:0.40
Consensus pattern (67 bp):
TTTCTTGCAGGGAATCTCTCCTGTTCACGCATTATTCTATTGCAGGGAATCTCTCCTGTTCACAT
CA
Found at i:26859100 original size:20 final size:22
Alignment explanation
Indices: 26859063--26859106 Score: 58
Period size: 20 Copynumber: 2.1 Consensus size: 22
26859053 GAGCAAATTG
26859063 TTGATTCTATTTCTTTTTG-AT
1 TTGATTCTATTTCTTTTTGTAT
26859084 TTGA-TCTA-TTCTTTTTTGTAT
1 TTGATTCTATTTC-TTTTTGTAT
26859105 TT
1 TT
26859107 CTCTTTTTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
19 3 0.14
20 10 0.48
21 8 0.38
ACGTcount: A:0.14, C:0.09, G:0.09, T:0.68
Consensus pattern (22 bp):
TTGATTCTATTTCTTTTTGTAT
Found at i:26862099 original size:11 final size:11
Alignment explanation
Indices: 26862083--26862108 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
26862073 CTATTCCTTG
26862083 TAAATTGGTCC
1 TAAATTGGTCC
26862094 TAAATTGGTCC
1 TAAATTGGTCC
26862105 TAAA
1 TAAA
26862109 ATCTACTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (11 bp):
TAAATTGGTCC
Found at i:26863373 original size:16 final size:14
Alignment explanation
Indices: 26863342--26863399 Score: 98
Period size: 14 Copynumber: 4.0 Consensus size: 14
26863332 CAGGAAGTCC
26863342 CGAGACATTTTTTA
1 CGAGACATTTTTTA
26863356 CGAGACATTTTATTTA
1 CGAGACA-TTT-TTTA
26863372 CGAGACATTTTTTA
1 CGAGACATTTTTTA
26863386 CGAGACATTTTTTA
1 CGAGACATTTTTTA
26863400 GTATAGTAAT
Statistics
Matches: 42, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
14 25 0.60
15 6 0.14
16 11 0.26
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.43
Consensus pattern (14 bp):
CGAGACATTTTTTA
Found at i:26866403 original size:25 final size:27
Alignment explanation
Indices: 26866357--26866415 Score: 77
Period size: 25 Copynumber: 2.3 Consensus size: 27
26866347 CACATAAACG
* *
26866357 GGAAGCTCTCTTTCGAGTCATATAATA
1 GGAAGCTCTCTGTCGAGCCATATAATA
*
26866384 GGAAGCTCT-TGT-GAGCCATATAATG
1 GGAAGCTCTCTGTCGAGCCATATAATA
26866409 GGAAGCT
1 GGAAGCT
26866416 TATCCGGACT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 18 0.62
26 2 0.07
27 9 0.31
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (27 bp):
GGAAGCTCTCTGTCGAGCCATATAATA
Found at i:26866483 original size:24 final size:23
Alignment explanation
Indices: 26866428--26866514 Score: 77
Period size: 24 Copynumber: 3.6 Consensus size: 23
26866418 TCCGGACTGT
26866428 ATAACAGGAAGCTCATAAGAGCC
1 ATAACAGGAAGCTCATAAGAGCC
* **
26866451 ATAGTCAGGAAGCTCATGCGAGCC
1 ATA-ACAGGAAGCTCATAAGAGCC
*
26866475 AATAACAGGTAGCTTCA-AAGAGCC
1 -ATAACAGGAAGC-TCATAAGAGCC
*
26866499 ATTAATCGGGAAGCTC
1 A-TAA-CAGGAAGCTC
26866515 CAGATAGCCA
Statistics
Matches: 50, Mismatches: 9, Indels: 9
0.74 0.13 0.13
Matches are distributed among these distances:
23 4 0.08
24 34 0.68
25 12 0.24
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (23 bp):
ATAACAGGAAGCTCATAAGAGCC
Found at i:26866583 original size:25 final size:26
Alignment explanation
Indices: 26866549--26866614 Score: 73
Period size: 26 Copynumber: 2.6 Consensus size: 26
26866539 TAAGCGATCC
* *
26866549 ATATCGGGAAGCTC-CGGAGAGCCAT
1 ATATCAGGAAGCTCACGAAGAGCCAT
*
26866574 -TAATCAGGAAGCTCATGAAGAGCCAT
1 AT-ATCAGGAAGCTCACGAAGAGCCAT
*
26866600 ATATCAGGACGCTCA
1 ATATCAGGAAGCTCA
26866615 TAAGAGCTGC
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
24 1 0.03
25 11 0.32
26 21 0.62
27 1 0.03
ACGTcount: A:0.33, C:0.23, G:0.26, T:0.18
Consensus pattern (26 bp):
ATATCAGGAAGCTCACGAAGAGCCAT
Found at i:26866599 original size:26 final size:25
Alignment explanation
Indices: 26866566--26866621 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 25
26866556 GAAGCTCCGG
26866566 AGAGCCAT-TAATCAGGAAGCTCATGA
1 AGAGCCATAT-ATCAGGAAGCTCAT-A
*
26866592 AGAGCCATATATCAGGACGCTCATA
1 AGAGCCATATATCAGGAAGCTCATA
26866617 AGAGC
1 AGAGC
26866622 TGCGGTGTGT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
25 6 0.21
26 21 0.75
27 1 0.04
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.18
Consensus pattern (25 bp):
AGAGCCATATATCAGGAAGCTCATA
Found at i:26867090 original size:5 final size:5
Alignment explanation
Indices: 26867061--26867099 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
26867051 TAAATTTAAC
* *
26867061 TCAAT TTAAT ACAAT TCATAT TCAAT TCAAT TCAAT TCA
1 TCAAT TCAAT TCAAT TCA-AT TCAAT TCAAT TCAAT TCA
26867100 CATATTAGGA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
5 24 0.83
6 5 0.17
ACGTcount: A:0.41, C:0.18, G:0.00, T:0.41
Consensus pattern (5 bp):
TCAAT
Found at i:26871150 original size:20 final size:21
Alignment explanation
Indices: 26871125--26871163 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
26871115 TTAGGTTGAA
*
26871125 TAAATT-ATATAAGTTTGTTT
1 TAAATTAATATAAATTTGTTT
26871145 TAAATTAATATAAATTTGT
1 TAAATTAATATAAATTTGT
26871164 ACTGCATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.51
Consensus pattern (21 bp):
TAAATTAATATAAATTTGTTT
Found at i:26872249 original size:16 final size:16
Alignment explanation
Indices: 26872228--26872267 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
26872218 TTTGGTTCGC
26872228 TGTAATAGAATAGAGG
1 TGTAATAGAATAGAGG
*
26872244 TGTAATGGAATAGAGG
1 TGTAATAGAATAGAGG
*
26872260 CGTAATAG
1 TGTAATAG
26872268 GTAATCCTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.40, C:0.03, G:0.33, T:0.25
Consensus pattern (16 bp):
TGTAATAGAATAGAGG
Found at i:26872463 original size:21 final size:21
Alignment explanation
Indices: 26872437--26872480 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
26872427 TATTAAATTT
*
26872437 TAATAAGATTATTAATA-TAAA
1 TAATAA-ATAATTAATATTAAA
*
26872458 TAATAAATAATTATTATTAAA
1 TAATAAATAATTAATATTAAA
26872479 TA
1 TA
26872481 TAATTTAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (21 bp):
TAATAAATAATTAATATTAAA
Found at i:26872508 original size:28 final size:28
Alignment explanation
Indices: 26872448--26872513 Score: 73
Period size: 28 Copynumber: 2.4 Consensus size: 28
26872438 AATAAGATTA
* *
26872448 TTAATATAA-ATAATAAATAATTATTAT
1 TTAATATAATTTAATAAATAATTATAAT
*
26872475 TAAATATAATTTAATAAA-AATATATAAT
1 TTAATATAATTTAATAAATAAT-TATAAT
*
26872503 TTAATAAAATT
1 TTAATATAATT
26872514 CTTAGTATTA
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
27 11 0.34
28 21 0.66
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (28 bp):
TTAATATAATTTAATAAATAATTATAAT
Found at i:26872558 original size:61 final size:60
Alignment explanation
Indices: 26872493--26872693 Score: 185
Period size: 61 Copynumber: 3.3 Consensus size: 60
26872483 ATTTAATAAA
26872493 AATATATAATTTAATAAAATTCTTAGTATTAAATATTCTTATATGAATTTACTAAAATCAT
1 AATATATAATTT-ATAAAATTCTTAGTATTAAATATTCTTATATGAATTTACTAAAATCAT
* * * * * * * ** * *
26872554 AATATATAATACTATAAAA-T-ATAAT-TTAAAATAATTATTAT-TAAATATAATTTAATAAA
1 AATATATAAT-TTATAAAATTCTTAGTATT-AAAT-ATTCTTATATGAATTTACTAAAATCAT
* **
26872613 AATATATAATTTGTTAAAATTCTTAGTATTAAGCATTCTTATATGAATTTACTAAAATCAT
1 AATATATAATTT-ATAAAATTCTTAGTATTAAATATTCTTATATGAATTTACTAAAATCAT
*
26872674 AATATATAATACTATAAAAT
1 AATATATAAT-TTATAAAAT
26872694 ATAATTTAAA
Statistics
Matches: 104, Mismatches: 27, Indels: 18
0.70 0.18 0.12
Matches are distributed among these distances:
58 3 0.03
59 33 0.32
60 16 0.15
61 48 0.46
62 4 0.04
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.42
Consensus pattern (60 bp):
AATATATAATTTATAAAATTCTTAGTATTAAATATTCTTATATGAATTTACTAAAATCAT
Found at i:26872593 original size:120 final size:120
Alignment explanation
Indices: 26872462--26872727 Score: 487
Period size: 120 Copynumber: 2.2 Consensus size: 120
26872452 TATAAATAAT
*
26872462 AAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAGTATTAAAT
1 AAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAGTATTAAAC
26872527 ATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTA
66 ATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTA
** *
26872582 AAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTGTTAAAATTCTTAGTATTAAGC
1 AAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAGTATTAAAC
26872647 ATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTA
66 ATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTA
*
26872702 AAATAATTATTATTAAACATAATTTA
1 AAATAATTATTATTAAATATAATTTA
26872728 TAATCTACTT
Statistics
Matches: 141, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
120 141 1.00
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.42
Consensus pattern (120 bp):
AAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAGTATTAAAC
ATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTA
Found at i:26872679 original size:59 final size:59
Alignment explanation
Indices: 26872496--26872679 Score: 155
Period size: 59 Copynumber: 3.1 Consensus size: 59
26872486 TAATAAAAAT
*
26872496 ATATAATTTAATAAAATTCTTAGTATTAAATATTCTTATATGAATTTACTAAAATCATA
1 ATATAATTTATTAAAATTCTTAGTATTAAATATTCTTATATGAATTTACTAAAATCATA
* * * * * * *
26872555 ATAT-ATAATACTATAAAATATAATTTA-AAATAATTATTATTAAATAT-AATTTAATAAAA--A
1 ATATAAT-TTA-T-TAAAAT-T--CTTAGTATTAAATATTCTT--ATATGAATTTACTAAAATCA
26872615 T-
58 TA
* **
26872616 ATATAATTTGTTAAAATTCTTAGTATTAAGCATTCTTATATGAATTTACTAAAATCATA
1 ATATAATTTATTAAAATTCTTAGTATTAAATATTCTTATATGAATTTACTAAAATCATA
26872675 ATATA
1 ATATA
26872680 TAATACTATA
Statistics
Matches: 94, Mismatches: 17, Indels: 28
0.68 0.12 0.20
Matches are distributed among these distances:
55 4 0.04
56 14 0.15
57 9 0.10
58 5 0.05
59 17 0.18
60 1 0.01
61 11 0.12
62 5 0.05
63 10 0.11
64 14 0.15
65 4 0.04
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.43
Consensus pattern (59 bp):
ATATAATTTATTAAAATTCTTAGTATTAAATATTCTTATATGAATTTACTAAAATCATA
Found at i:26874981 original size:51 final size:50
Alignment explanation
Indices: 26874904--26875008 Score: 165
Period size: 51 Copynumber: 2.1 Consensus size: 50
26874894 ATGCTGGTTT
** *
26874904 TGATACCCTATCTTGATAGGTGCAACAAATGGACACTTAAATATAAACAAA
1 TGATACCCTATCTTGATACATACAACAAATGGACACTT-AATATAAACAAA
*
26874955 TGATACCCTATCTTGATACATACAACACATGGACACTTAATATAAACAAA
1 TGATACCCTATCTTGATACATACAACAAATGGACACTTAATATAAACAAA
26875005 TGAT
1 TGAT
26875009 TTATAGCTAC
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
50 16 0.32
51 34 0.68
ACGTcount: A:0.43, C:0.19, G:0.11, T:0.27
Consensus pattern (50 bp):
TGATACCCTATCTTGATACATACAACAAATGGACACTTAATATAAACAAA
Found at i:26875659 original size:227 final size:227
Alignment explanation
Indices: 26875264--26875717 Score: 881
Period size: 227 Copynumber: 2.0 Consensus size: 227
26875254 GATAGACGAT
* *
26875264 TGGATCCTTTGCTGTCTGTTCTGAAAAGAGATACTCTAAAGTTACCCCCTATAACTCAGTGTGAA
1 TGGATCCTTTGCTGTCTGTTCTGAAAAGAGATACTCTAAAGTTACCCCCCAAAACTCAGTGTGAA
*
26875329 GATGATTGAGTAGCCGTACACTAACAGCTATAGGAGGCTACTATGGGTGGTGGGGGCCAATCCCA
66 GATGATTGAGTAGCCGTACACTAACAGCTATAGGAGGCTACTATGGGTGGTGGGAGCCAATCCCA
26875394 AGGGGAAGAAGGGCTGAGACATTATAACTAATGAAACAAAGAAAAACATGGATGATGGAGGATCT
131 AGGGGAAGAAGGGCTGAGACATTATAACTAATGAAACAAAGAAAAACATGGATGATGGAGGATCT
26875459 AACCACCTTCGGCCCTATTTGTCAAGAATCGA
196 AACCACCTTCGGCCCTATTTGTCAAGAATCGA
26875491 TGGATCCTTTGCTGTCTGTTCTGAAAAGAGATACTCTAAAGTTACCCCCCAAAACTCAGTGTGAA
1 TGGATCCTTTGCTGTCTGTTCTGAAAAGAGATACTCTAAAGTTACCCCCCAAAACTCAGTGTGAA
26875556 GATGATTGAGTAGCCGTACACTAACAGCTATAGGAGGCTACTATGGGTGGTGGGAGCCAATCCCA
66 GATGATTGAGTAGCCGTACACTAACAGCTATAGGAGGCTACTATGGGTGGTGGGAGCCAATCCCA
26875621 AGGGGAAGAAGGGCTGAGACATTATAACTAATGAAACAAAGAAAAACATGGATGATGGAGGATCT
131 AGGGGAAGAAGGGCTGAGACATTATAACTAATGAAACAAAGAAAAACATGGATGATGGAGGATCT
26875686 AACCACCTTCGGCCCTATTTGTCAAGAATCGA
196 AACCACCTTCGGCCCTATTTGTCAAGAATCGA
26875718 CAATGCTGGA
Statistics
Matches: 224, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
227 224 1.00
ACGTcount: A:0.33, C:0.19, G:0.25, T:0.23
Consensus pattern (227 bp):
TGGATCCTTTGCTGTCTGTTCTGAAAAGAGATACTCTAAAGTTACCCCCCAAAACTCAGTGTGAA
GATGATTGAGTAGCCGTACACTAACAGCTATAGGAGGCTACTATGGGTGGTGGGAGCCAATCCCA
AGGGGAAGAAGGGCTGAGACATTATAACTAATGAAACAAAGAAAAACATGGATGATGGAGGATCT
AACCACCTTCGGCCCTATTTGTCAAGAATCGA
Found at i:26883314 original size:26 final size:26
Alignment explanation
Indices: 26883264--26883314 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
26883254 TTGGACGATT
*
26883264 GAACGATTGAAATTTTAAGGGAAAGG
1 GAACGATTGAAATTTTAAGGAAAAGG
26883290 GAACGATTGAAATTTT-AGAGAAAAG
1 GAACGATTGAAATTTTAAG-GAAAAG
26883315 CGATCAGGAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.45, C:0.04, G:0.27, T:0.24
Consensus pattern (26 bp):
GAACGATTGAAATTTTAAGGAAAAGG
Found at i:26884427 original size:25 final size:25
Alignment explanation
Indices: 26884399--26884446 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
26884389 AAATACTTTA
*
26884399 ATTTA-AATAATATATATGTATATGT
1 ATTTACAA-AATATATATATATATGT
*
26884424 ATTTACAAAATATGTATATATAT
1 ATTTACAAAATATATATATATAT
26884447 AAGTATAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 18 0.90
26 2 0.10
ACGTcount: A:0.46, C:0.02, G:0.06, T:0.46
Consensus pattern (25 bp):
ATTTACAAAATATATATATATATGT
Found at i:26884824 original size:3 final size:3
Alignment explanation
Indices: 26884816--26884897 Score: 71
Period size: 3 Copynumber: 27.7 Consensus size: 3
26884806 TTAATATAGA
* ** *
26884816 AAT AAT AAT AAT AAT AAT AAT -AT AAT AAT AAT AAT AAG AGC AAT AGT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* *
26884863 AAA AAT AATT AAT -TT AAT AAT AA- AAT AATT AAT AA
1 AAT AAT AA-T AAT AAT AAT AAT AAT AAT AA-T AAT AA
26884898 CAAATAGAGG
Statistics
Matches: 63, Mismatches: 11, Indels: 10
0.75 0.13 0.12
Matches are distributed among these distances:
2 5 0.08
3 52 0.83
4 6 0.10
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:26885805 original size:18 final size:18
Alignment explanation
Indices: 26885782--26885821 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
26885772 GCTGCTGAAT
26885782 GTGGGCGGTTGCTGCGAC
1 GTGGGCGGTTGCTGCGAC
*
26885800 GTGGGCGGTTGCTGTGAC
1 GTGGGCGGTTGCTGCGAC
26885818 GTGG
1 GTGG
26885822 AGTACGCGGC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.05, C:0.17, G:0.53, T:0.25
Consensus pattern (18 bp):
GTGGGCGGTTGCTGCGAC
Found at i:26886513 original size:128 final size:128
Alignment explanation
Indices: 26886239--26886659 Score: 507
Period size: 128 Copynumber: 3.3 Consensus size: 128
26886229 CTTTAGTCTA
* * ** * * ** *
26886239 CTCCACTGCAACTTCAGGGAGATAAGACTT-GTAGCTTCAACTTATTCTGCTGCAACTTTA--AA
1 CTCCACTGCAACTTCAGGGAGATAGGA-TTATTTTCTTCAATTTACTCCACTGCAACTTTAGGGA
* * * * *
26886301 GATAAGTCT-GATGCGATCTGCTCTACTGCAAC-TCATAG-AGATAAGATCCGTTTTTAATCCG
65 GATAAGACTGGATACAATCTGCTCTTCTGCAACTTCATAGAAGATAAGATCCGATTTTAATCCG
* *
26886362 CTCCACTGCATCTTCAGGGAGATAGGATTATTTTTTTCAATTTACTCCACTGCAACTTTAGGGAG
1 CTCCACTGCAACTTCAGGGAGATAGGATTATTTTCTTCAATTTACTCCACTGCAACTTTAGGGAG
* * * * * *
26886427 ATAAGATTGGATACAATCTGCTCTTCTGTAACTTCATAGAAGCTAAGATCTGATGTTAATCTG
66 ATAAGACTGGATACAATCTGCTCTTCTGCAACTTCATAGAAGATAAGATCCGATTTTAATCCG
* * *
26886490 CTCTACTGCAACTTCAGGAAGATAGGATTATTTTCTTCAATCTACTCCACTGCAACTTTAGGGAG
1 CTCCACTGCAACTTCAGGGAGATAGGATTATTTTCTTCAATTTACTCCACTGCAACTTTAGGGAG
* * *
26886555 ATAAGACTGGATGCGATCTACTCTTCTGCAACTT--TAGAGAGATAAGATCCGATTTTAATCCG
66 ATAAGACTGGATACAATCTGCTCTTCTGCAACTTCATAGA-AGATAAGATCCGATTTTAATCCG
*
26886617 CTCCACTGCAATTTCAGGGAGATAGGATTATTTTCTTCAATTT
1 CTCCACTGCAACTTCAGGGAGATAGGATTATTTTCTTCAATTT
26886660 GTTTAACTGC
Statistics
Matches: 251, Mismatches: 40, Indels: 10
0.83 0.13 0.03
Matches are distributed among these distances:
122 2 0.01
123 47 0.19
125 8 0.03
126 23 0.09
127 64 0.25
128 107 0.43
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (128 bp):
CTCCACTGCAACTTCAGGGAGATAGGATTATTTTCTTCAATTTACTCCACTGCAACTTTAGGGAG
ATAAGACTGGATACAATCTGCTCTTCTGCAACTTCATAGAAGATAAGATCCGATTTTAATCCG
Found at i:26886542 original size:44 final size:43
Alignment explanation
Indices: 26886362--26886557 Score: 119
Period size: 44 Copynumber: 4.6 Consensus size: 43
26886352 TTTTAATCCG
* * *
26886362 CTCCACTGCATCTTCAGGGAGATAGGATTATTTTTTTCAATTTA
1 CTCCACTGCAACTTCAGGGAGATAGGA-TATTTTATTCAATCTA
* * ** * *
26886406 CTCCACTGCAACTTTAGGGAGATA--AGATTGGATACAATCTG
1 CTCCACTGCAACTTCAGGGAGATAGGATATTTTATTCAATCTA
** * * * * * * ** * *
26886447 CTCTTCTGTAACTTCATAGAAGCTAAGATCTGATGTT-AATCTG
1 CTCCACTGCAACTTCA-GGGAGATAGGATATTTTATTCAATCTA
* * *
26886490 CTCTACTGCAACTTCAGGAAGATAGGATTATTTTCTTCAATCTA
1 CTCCACTGCAACTTCAGGGAGATAGGA-TATTTTATTCAATCTA
*
26886534 CTCCACTGCAACTTTAGGGAGATA
1 CTCCACTGCAACTTCAGGGAGATA
26886558 AGACTGGATG
Statistics
Matches: 111, Mismatches: 36, Indels: 10
0.71 0.23 0.06
Matches are distributed among these distances:
41 21 0.19
42 14 0.13
43 25 0.23
44 51 0.46
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (43 bp):
CTCCACTGCAACTTCAGGGAGATAGGATATTTTATTCAATCTA
Found at i:26886785 original size:100 final size:98
Alignment explanation
Indices: 26886651--26887016 Score: 495
Period size: 100 Copynumber: 3.7 Consensus size: 98
26886641 GGATTATTTT
*
26886651 CTTCAAT-TTGTTTAACTGCAATGTCGGAGAAACAAGATTTGCCATCGTGACTTCAATCTGTTCC
1 CTTCAATCTT-TTTAACTGCAATGTCGG-GAAACAAGATTCGCCATCGTGACTTCAATCTGTTCC
* *
26886715 ACTGCACTGCCAGGAAGGTAAGATTCGCCGTTGTGG
64 ACTACACCGCCAGGAA-GTAAGATTCGCCGTTGTGG
* * * * *
26886751 CTTCAATATATTTAACTACAATGTCAGGGAAACAAGATTCGCCATCGTGACTTCAATCTATTCCC
1 CTTCAATCTTTTTAACTGCAATGTC-GGGAAACAAGATTCGCCATCGTGACTTCAATCTGTTCCA
*
26886816 CTACACCGCCAGGGAAGTAAGATTCACCGTTGTGG
65 CTACACCGCCA-GGAAGTAAGATTCGCCGTTGTGG
* *
26886851 CTTCAATCTTTTTAATTGCAATGTCGGGAAACAAGATACGCCATCGT-AGCTTCAATCTGTTCCA
1 CTTCAATCTTTTTAACTGCAATGTCGGGAAACAAGATTCGCCATCGTGA-CTTCAATCTGTTCCA
*
26886915 CTACACCACCAAGGAAGTAAGATTCGCCGTTGTGG
65 CTACACCGCC-AGGAAGTAAGATTCGCCGTTGTGG
* * *
26886950 CTTCAATCTTTTTAATTGCAATGTCGGGGAAACAAGA-TCTGCCGTCGTGGCTTCAATCTGTTCC
1 CTTCAATCTTTTTAACTGCAATGTC-GGGAAACAAGATTC-GCCATCGTGACTTCAATCTGTTCC
26887014 ACT
64 ACT
26887017 GTAATGCCAA
Statistics
Matches: 238, Mismatches: 20, Indels: 16
0.87 0.07 0.06
Matches are distributed among these distances:
98 1 0.00
99 91 0.38
100 139 0.58
101 7 0.03
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.30
Consensus pattern (98 bp):
CTTCAATCTTTTTAACTGCAATGTCGGGAAACAAGATTCGCCATCGTGACTTCAATCTGTTCCAC
TACACCGCCAGGAAGTAAGATTCGCCGTTGTGG
Found at i:26886987 original size:50 final size:50
Alignment explanation
Indices: 26886651--26887008 Score: 220
Period size: 50 Copynumber: 7.2 Consensus size: 50
26886641 GGATTATTTT
* * * * * *
26886651 CTTCAATTTGTTTAACTGCAATGTC-GGAGAAACAAGATTTGCCATCGTGA
1 CTTCAATCTATTTAACTACAATGTCAGG-GAAACAAGATTCGCCGTCGTGG
* ** * * * ** *
26886701 CTTCAATCTGTTCCACTGCACTGCCA-GGAAGGTAAGATTCGCCGTTGTGG
1 CTTCAATCTATTTAACTACAATGTCAGGGAA-ACAAGATTCGCCGTCGTGG
* * *
26886751 CTTCAATATATTTAACTACAATGTCAGGGAAACAAGATTCGCCATCGTGA
1 CTTCAATCTATTTAACTACAATGTCAGGGAAACAAGATTCGCCGTCGTGG
*** ** * ** * *
26886801 CTTCAATCTATTCCCCTACACCGCCAGGGAAGTAAGATTCACCGTTGTGG
1 CTTCAATCTATTTAACTACAATGTCAGGGAAACAAGATTCGCCGTCGTGG
* * * * * *
26886851 CTTCAATCTTTTTAATTGCAATGTC-GGGAAACAAGATACGCCATCGTAG
1 CTTCAATCTATTTAACTACAATGTCAGGGAAACAAGATTCGCCGTCGTGG
* ** **** * ** *
26886900 CTTCAATCTGTTCCACTACACCACCAAGGAAGTAAGATTCGCCGTTGTGG
1 CTTCAATCTATTTAACTACAATGTCAGGGAAACAAGATTCGCCGTCGTGG
* * * *
26886950 CTTCAATCTTTTTAATTGCAATGTCGGGGAAACAAGA-TCTGCCGTCGTGG
1 CTTCAATCTATTTAACTACAATGTCAGGGAAACAAGATTC-GCCGTCGTGG
26887000 CTTCAATCT
1 CTTCAATCT
26887009 GTTCCACTGT
Statistics
Matches: 221, Mismatches: 82, Indels: 10
0.71 0.26 0.03
Matches are distributed among these distances:
49 38 0.17
50 179 0.81
51 4 0.02
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.29
Consensus pattern (50 bp):
CTTCAATCTATTTAACTACAATGTCAGGGAAACAAGATTCGCCGTCGTGG
Found at i:26888293 original size:42 final size:42
Alignment explanation
Indices: 26888225--26888345 Score: 145
Period size: 42 Copynumber: 2.9 Consensus size: 42
26888215 GGTATAGCAA
* * * **
26888225 GATCA-CTGCATGCCTCATTCTAATCAATATTTGAGCTGCTCT
1 GATCACCT-CATGCCCCATTTTGATCAATATTTGAGCCACTCT
*
26888267 GATCACCTCATGCCCCATTTTGATCAATATTTGAGCCATTCT
1 GATCACCTCATGCCCCATTTTGATCAATATTTGAGCCACTCT
* * *
26888309 GATCACCTCATACCCCGTTTTGATCAATATTTAAGCC
1 GATCACCTCATGCCCCATTTTGATCAATATTTGAGCC
26888346 GCCCTTTTTG
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
42 67 0.97
43 2 0.03
ACGTcount: A:0.25, C:0.28, G:0.12, T:0.35
Consensus pattern (42 bp):
GATCACCTCATGCCCCATTTTGATCAATATTTGAGCCACTCT
Found at i:26888503 original size:47 final size:47
Alignment explanation
Indices: 26888451--26888542 Score: 114
Period size: 47 Copynumber: 2.0 Consensus size: 47
26888441 TTCTTTTCCT
*
26888451 TTTTTCATCA-TTCTTATTTTTCAATTTTTATTTTTATTTTATTTTGA
1 TTTTTCATCATTTCTTATTTTTCAATTTTT-TTTTCATTTTATTTTGA
* * * **
26888498 TTTTTCCTGATTTTTTATTTTTTGATTTTTTTTTCATTTTATTTT
1 TTTTTCATCATTTCTTATTTTTCAATTTTTTTTTCATTTTATTTT
26888543 TTCAAATTTT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
47 22 0.58
48 16 0.42
ACGTcount: A:0.15, C:0.08, G:0.03, T:0.74
Consensus pattern (47 bp):
TTTTTCATCATTTCTTATTTTTCAATTTTTTTTTCATTTTATTTTGA
Found at i:26888542 original size:13 final size:13
Alignment explanation
Indices: 26888510--26888546 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
26888500 TTTCCTGATT
*
26888510 TTTTATTTTTTGA
1 TTTTATTTTTTCA
26888523 -TTT-TTTTTTCA
1 TTTTATTTTTTCA
26888534 TTTTATTTTTTCA
1 TTTTATTTTTTCA
26888547 AATTTTTCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
11 7 0.33
12 6 0.29
13 8 0.38
ACGTcount: A:0.14, C:0.05, G:0.03, T:0.78
Consensus pattern (13 bp):
TTTTATTTTTTCA
Found at i:26888545 original size:42 final size:41
Alignment explanation
Indices: 26888466--26888543 Score: 106
Period size: 41 Copynumber: 1.9 Consensus size: 41
26888456 CATCATTCTT
26888466 ATTTTTCAATTTTTATTTTTATTTTATTTTGATTTTTCCTG
1 ATTTTTCAATTTTTATTTTTATTTTATTTTGATTTTTCCTG
* *
26888507 ATTTTTTATTTTTTGATTTTT-TTTTCATTTT-ATTTTT
1 ATTTTTCAATTTTT-ATTTTTATTTT-ATTTTGATTTTT
26888544 TCAAATTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
41 22 0.67
42 11 0.33
ACGTcount: A:0.15, C:0.05, G:0.04, T:0.76
Consensus pattern (41 bp):
ATTTTTCAATTTTTATTTTTATTTTATTTTGATTTTTCCTG
Found at i:26888552 original size:41 final size:41
Alignment explanation
Indices: 26888466--26888554 Score: 101
Period size: 41 Copynumber: 2.2 Consensus size: 41
26888456 CATCATTCTT
**
26888466 ATTTTTCAATTTTTATTTTTATTTTATTTTGATTTTTCCTG
1 ATTTTTCAATTTTTATTTTTATTTTATTTTGATTTTTCCAA
* * *
26888507 ATTTTTTATTTTTTGATTTTT-TTTTCATTTT-ATTTTTTCAA
1 ATTTTTCAATTTTT-ATTTTTATTTT-ATTTTGATTTTTCCAA
26888548 ATTTTTC
1 ATTTTTC
26888555 TTTGATTGAA
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
41 29 0.73
42 11 0.28
ACGTcount: A:0.17, C:0.07, G:0.03, T:0.73
Consensus pattern (41 bp):
ATTTTTCAATTTTTATTTTTATTTTATTTTGATTTTTCCAA
Found at i:26907325 original size:135 final size:136
Alignment explanation
Indices: 26907154--26907403 Score: 358
Period size: 135 Copynumber: 1.8 Consensus size: 136
26907144 TGATATAAAT
** * * *
26907154 AAATCTAAAAAATTCATGTTAGTATTTTAATCAAAATAAAATATTTAAACTAATTAATGATATTG
1 AAATCTAAAAAATTCATGTTAACATTTTAATCAAAATAAAATATTTAAACTAATTAACGACATTA
26907219 T-AATAAAGAATAAAATTCAAATTGAATATAAGATAAGGACTAAAATTACTGTATAAACCTAAGA
66 TAAATAAAGAATAAAATTCAAATTGAATATAAGATAAGGACTAAAATTACTGTATAAACCTAAGA
26907283 AGATGC
131 AGATGC
* * *
26907289 AAATTTAAAAAATTTATGTTAACATTTTAATCAAAATAAAATATTTAGACTAATTAACGACATTA
1 AAATCTAAAAAATTCATGTTAACATTTTAATCAAAATAAAATATTTAAACTAATTAACGACATTA
* * *
26907354 TAAAAAAATTAAGAATAAATTTTAAATTGAATATAAGATAAGGACTAAAA
66 T----AAATAAAGAATAAAATTCAAATTGAATATAAGATAAGGACTAAAA
26907404 CTGAATTTTA
Statistics
Matches: 99, Mismatches: 11, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
135 58 0.59
140 41 0.41
ACGTcount: A:0.53, C:0.06, G:0.08, T:0.32
Consensus pattern (136 bp):
AAATCTAAAAAATTCATGTTAACATTTTAATCAAAATAAAATATTTAAACTAATTAACGACATTA
TAAATAAAGAATAAAATTCAAATTGAATATAAGATAAGGACTAAAATTACTGTATAAACCTAAGA
AGATGC
Found at i:26908055 original size:34 final size:34
Alignment explanation
Indices: 26908007--26908076 Score: 106
Period size: 34 Copynumber: 2.1 Consensus size: 34
26907997 TTCAAGCGCA
*
26908007 TTAGGGTTTTGTTTATTTAAA-TTAGGATTTAGGG
1 TTAGGGTTTTGTTTATTTAAAGTAAGG-TTTAGGG
*
26908041 TTAGTGTTTTGTTTATTTAAAGTAAGGTTTAGGG
1 TTAGGGTTTTGTTTATTTAAAGTAAGGTTTAGGG
26908075 TT
1 TT
26908077 TTTTGAGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
34 29 0.88
35 4 0.12
ACGTcount: A:0.23, C:0.00, G:0.26, T:0.51
Consensus pattern (34 bp):
TTAGGGTTTTGTTTATTTAAAGTAAGGTTTAGGG
Found at i:26908659 original size:40 final size:41
Alignment explanation
Indices: 26908608--26908712 Score: 126
Period size: 40 Copynumber: 2.6 Consensus size: 41
26908598 AAGCACCACA
* *
26908608 AAAAATCGAGCATTAGCGGCGATTTAGCCA-AAGCGCCGCT
1 AAAAATAGAGCATTAGCGGCGATTTACCCAGAAGCGCCGCT
** *
26908648 AAAGGTAGAGCATCAGCGGCGATTT-CCCAGAAGCGCCGCT
1 AAAAATAGAGCATTAGCGGCGATTTACCCAGAAGCGCCGCT
* *
26908688 AAAAATAG-GAATTAGCGGCGTTTTA
1 AAAAATAGAGCATTAGCGGCGATTTA
26908713 TATAAAGCGC
Statistics
Matches: 53, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.30
40 37 0.70
ACGTcount: A:0.32, C:0.22, G:0.27, T:0.19
Consensus pattern (41 bp):
AAAAATAGAGCATTAGCGGCGATTTACCCAGAAGCGCCGCT
Found at i:26908826 original size:41 final size:41
Alignment explanation
Indices: 26908769--26908908 Score: 210
Period size: 41 Copynumber: 3.4 Consensus size: 41
26908759 ATTTTTTAAA
*
26908769 CCTTTAGCGGCGTTTTTATCTAAGCGTCGCTAATTCTCTGG
1 CCTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATTCTCTGG
* *
26908810 CCTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTC-GAA
1 CCTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATTCTCTG-G
* * *
26908851 TCTTTAGCGGCGTTTTTATCTGAGCGCCACTAATTCTCTGG
1 CCTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATTCTCTGG
26908892 CCTTTAGCGGCGTTTTT
1 CCTTTAGCGGCGTTTTT
26908909 GCCGAAGCGC
Statistics
Matches: 88, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
40 1 0.01
41 86 0.98
42 1 0.01
ACGTcount: A:0.15, C:0.25, G:0.22, T:0.38
Consensus pattern (41 bp):
CCTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATTCTCTGG
Found at i:26908917 original size:82 final size:82
Alignment explanation
Indices: 26908770--26908925 Score: 249
Period size: 82 Copynumber: 1.9 Consensus size: 82
26908760 TTTTTTAAAC
* * * *
26908770 CTTTAGCGGCGTTTTTATCTAAGCGTCGCTAATTCTCTGGCCTTTAGCGGCGTTTTTATCTAAGC
1 CTTTAGCGGCGTTTTTATCTAAGCGCCACTAATTCTCTGGCCTTTAGCGGCGTTTTTACCGAAGC
26908835 GCCGCTAATGCTCGAAT
66 GCCGCTAATGCTCGAAT
* *
26908852 CTTTAGCGGCGTTTTTATCTGAGCGCCACTAATTCTCTGGCCTTTAGCGGCGTTTTTGCCGAAGC
1 CTTTAGCGGCGTTTTTATCTAAGCGCCACTAATTCTCTGGCCTTTAGCGGCGTTTTTACCGAAGC
*
26908917 GCTGCTAAT
66 GCCGCTAAT
26908926 AGTAACAAAA
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
82 67 1.00
ACGTcount: A:0.16, C:0.25, G:0.23, T:0.36
Consensus pattern (82 bp):
CTTTAGCGGCGTTTTTATCTAAGCGCCACTAATTCTCTGGCCTTTAGCGGCGTTTTTACCGAAGC
GCCGCTAATGCTCGAAT
Done.