Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62811768
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 736185 characters in sequence are not A, C, G, or T
File 98 of 211
Found at i:27128193 original size:133 final size:131
Alignment explanation
Indices: 27127835--27128281 Score: 659
Period size: 126 Copynumber: 3.5 Consensus size: 131
27127825 TAGGTTGAAA
* *
27127835 ATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGAT------TGAAGATCTTGTCTTCCCAT
1 ATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCAT
* *
27127894 ATTGGTGGCAAAGTTA-ATCAAAGAAAGCAGATCCTGTCTTCATGTATTGACGTGAAGTAGATCG
66 ATTGGTGGCGAAG-TAGATCAAAGAAAGCAGATCTTGTCTTCATGTATTG-CGTGAAGTAGATCG
27127958 AAG
129 AAG
* *
27127961 ATAGCATATCCTGTCTTCCTATATTGGTAGGGAGTGGATCGAAGA--C----CTTGTCTTCCCAT
1 ATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCAT
27128020 ATTGGTGGCGAAGTAGATCAAAGAAAGCAGATCTTGTCTTCATGTATTAGCGTGAAGTAGATCGA
66 ATTGGTGGCGAAGTAGATCAAAGAAAGCAGATCTTGTCTTCATGTATT-GCGTGAAGTAGATCGA
27128085 AG
130 AG
*
27128087 ATAGCAGATCCTGTCTTCCTATATTGGTAGTGAAGTGGATCGAAGATGCAGATCTTATCTTCCCA
1 ATAGCAGATCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCA
* * *
27128152 TACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAATAGATCG
65 TATTGGTGGCGAAGTAGATCAAAGAAAGCAGATCTTGTCTTCATGTATT-GCGTGAAGTAGATCG
27128217 AAG
129 AAG
27128220 ATAGCAGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTTC
1 ATAGCAGATCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGATGCAGATCTTGTCTTC
27128282 ATGTATTGGC
Statistics
Matches: 291, Mismatches: 15, Indels: 23
0.88 0.05 0.07
Matches are distributed among these distances:
125 2 0.01
126 138 0.47
127 15 0.05
129 1 0.00
133 135 0.46
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (131 bp):
ATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCAT
ATTGGTGGCGAAGTAGATCAAAGAAAGCAGATCTTGTCTTCATGTATTGCGTGAAGTAGATCGAA
G
Found at i:27128281 original size:177 final size:177
Alignment explanation
Indices: 27128033--27128460 Score: 520
Period size: 177 Copynumber: 2.4 Consensus size: 177
27128023 GGTGGCGAAG
* * * * * * * *
27128033 TAGATCAAAGAAAGCAGATCTTGTCTTCATGTATTAG-CGTGAAGTAGATCGAAGATAGCAGATC
1 TAGATCGAAGAAAGCAGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGATAGCAGATC
* * * * *
27128097 CTGTCTTCCTATATTGGTAGTGAAGTGGATCGAAG-ATGCAGATCTTATCTTCCCATACTGGTGG
66 TTGTCTTCCTATATTGG-AGTGAAATAGATCGAAGAAT-CAAATCTTATCTTCCCATACTGGTAG
* *
27128161 CGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAA
129 CGAAGTAGATCAAAGAAAGCAAATCTTGTCTTCATGTATTGGCGTGAAA
*
27128210 TAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGAT-GCAGATC
1 TAGATCGAAGAAAGCAGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGATAGCAGATC
* * * * * * *
27128274 TTGTCTTCATGTATTGGCGTGAAATAGATCGAAGAAATCAAATCTTGTCTTTCTATATTGGTAGC
66 TTGTCTTCCTATATTGGAGTGAAATAGATCGAAG-AATCAAATCTTATCTTCCCATACTGGTAGC
* * * *
27128339 GAAGTGGATTAAAGATAGCAAATCTTGTCTTCATGTATTGGCGTGAAG
130 GAAGTAGATCAAAGAAAGCAAATCTTGTCTTCATGTATTGGCGTGAAA
* * * *
27128387 TAGATCGAAGAAAACAAATCCTGTCTTCCTATATTGGTAGCGAAGTGGATTGAAGATAGCAAATC
1 TAGATCGAAGAAAGCAGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGATAGCAGATC
*
27128452 TTATCTTCC
66 TTGTCTTCC
27128461 CATACTAGTG
Statistics
Matches: 213, Mismatches: 34, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
176 14 0.07
177 168 0.79
178 31 0.15
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (177 bp):
TAGATCGAAGAAAGCAGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGATAGCAGATC
TTGTCTTCCTATATTGGAGTGAAATAGATCGAAGAATCAAATCTTATCTTCCCATACTGGTAGCG
AAGTAGATCAAAGAAAGCAAATCTTGTCTTCATGTATTGGCGTGAAA
Found at i:27128354 original size:133 final size:133
Alignment explanation
Indices: 27127835--27128459 Score: 683
Period size: 133 Copynumber: 4.8 Consensus size: 133
27127825 TAGGTTGAAA
* *
27127835 ATAGCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGAT------TGAAGATCTTGTCTTCCCA
1 ATAGCAGATCCTGTCTTCCTATATTGGTAGTGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCA
* * * *
27127893 TATTGGTGGCAAAGTTA-ATCAAAGAAAGCAGATCCTGTCTTCATGTATTGACGTGAAGTAGATC
66 TATTGGTGGCGAAG-TAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATC
27127957 GAAG
130 GAAG
* *
27127961 ATAGCATATCCTGTCTTCCTATATTGGTAG-GGAGTGGATCGAAGA--C----CTTGTCTTCCCA
1 ATAGCAGATCCTGTCTTCCTATATTGGTAGTGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCA
* *
27128019 TATTGGTGGCGAAGTAGATCAAAGAAAGCAGATCTTGTCTTCATGTATTAGCGTGAAGTAGATCG
66 TATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCG
27128084 AAG
131 AAG
*
27128087 ATAGCAGATCCTGTCTTCCTATATTGGTAGTGAAGTGGATCGAAGATGCAGATCTTATCTTCCCA
1 ATAGCAGATCCTGTCTTCCTATATTGGTAGTGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCA
* *
27128152 TACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAATAGATCG
66 TATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCG
27128217 AAG
131 AAG
* ***
27128220 ATAGCAGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTTCATG
1 ATAGCAGATCCTGTCTTCCTATATTGGTAGTGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCA
* * * * * * * * *
27128285 TATTGG-CGTGAAATAGATCGAAGAAATCAAATCTTGTCTTTC-TATATTGGTAGCGAAGTGGAT
66 TATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTC-TTCATGTATTGG-CGTGAAGTAGAT
**
27128348 TAAAG
129 CGAAG
* * * * * * ** * * *
27128353 ATAGCAAATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGAAAACAAATCCTGTCTTCCT
1 ATAGCAGATCCTGTCTTCCTATATTGGTAGTGAAGTGGATCGAAG-ATGCAGATCTTGTCTTCCC
* * * * * *
27128417 ATATTGGTAGCGAAGTGGATTGAAGATAGCAAATCTTATCTTC
65 ATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTC
27128460 CCATACTAGT
Statistics
Matches: 427, Mismatches: 54, Indels: 29
0.84 0.11 0.06
Matches are distributed among these distances:
125 2 0.00
126 138 0.32
127 14 0.03
129 1 0.00
132 48 0.11
133 200 0.47
134 24 0.06
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (133 bp):
ATAGCAGATCCTGTCTTCCTATATTGGTAGTGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCA
TATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCG
AAG
Found at i:27128521 original size:89 final size:87
Alignment explanation
Indices: 27128231--27128513 Score: 302
Period size: 89 Copynumber: 3.2 Consensus size: 87
27128221 TAGCAGATCC
** * * * * *
27128231 TGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGAT-GCAGATCTTGTCTTCATGTATTGGCGTG
1 TGTCTT-CTATATTGGTAGCGAAGTGGATTAAAGATAGCAAATCTTATCTTCATCTAGTGACG-G
*
27128295 AAATAGATCGAAG-AAATCAAATCT
64 AAGTAGATCGAAGAAAAT-AAATCT
* * * *
27128319 TGTCTTTCTATATTGGTAGCGAAGTGGATTAAAGATAGCAAATCTTGTCTTCATGTATTGGCGTG
1 TGTC-TTCTATATTGGTAGCGAAGTGGATTAAAGATAGCAAATCTTATCTTCATCTAGTGACG-G
* *
27128384 AAGTAGATCGAAGAAAACAAATCC
64 AAGTAGATCGAAGAAAATAAATCT
*
27128408 TGTCTTCCTATATTGGTAGCGAAGTGGATTGAAGATAGCAAATCTTATCTTCCCATACTAGTGAC
1 TGTCTT-CTATATTGGTAGCGAAGTGGATTAAAGATAGCAAATCTTATCTT--CAT-CTAGTGAC
*
27128473 -GAAGTAGATCGAAGAAAATAGATCT
62 GGAAGTAGATCGAAGAAAATAAATCT
*
27128498 TGTCTTCATGTATTGG
1 TGTCTTC-TATATTGG
27128514 CATGAAGTAG
Statistics
Matches: 172, Mismatches: 15, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
88 33 0.19
89 93 0.54
90 38 0.22
91 3 0.02
92 5 0.03
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.32
Consensus pattern (87 bp):
TGTCTTCTATATTGGTAGCGAAGTGGATTAAAGATAGCAAATCTTATCTTCATCTAGTGACGGAA
GTAGATCGAAGAAAATAAATCT
Found at i:27128734 original size:44 final size:44
Alignment explanation
Indices: 27128594--27128748 Score: 127
Period size: 44 Copynumber: 3.5 Consensus size: 44
27128584 TCATATCCAG
* * *
27128594 TCTTATC-CTCCTGAAGTTGCAGT-GAGGCGGACTGAAGATGACAAA
1 TCTTATCTC-CCTGAAGTTGCAGTGGA-GCGGA-TTAAAATCACAAA
* * * * **
27128639 TCTCATCTCCTTGAAGTTGCAGTGGAGCAGATTAGAGCCA-ATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATCACA-AA
* * *
27128683 TCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAATCACAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATCACAAA
* *
27128727 TCTTATCTCTCTAAAGTTGCAG
1 TCTTATCTCCCTGAAGTTGCAG
27128749 AGAGTAGATC
Statistics
Matches: 85, Mismatches: 21, Indels: 9
0.74 0.18 0.08
Matches are distributed among these distances:
43 1 0.01
44 57 0.67
45 24 0.28
46 3 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATCACAAA
Found at i:27130318 original size:40 final size:41
Alignment explanation
Indices: 27130264--27130340 Score: 102
Period size: 40 Copynumber: 1.9 Consensus size: 41
27130254 TTATTTTTAA
**
27130264 TATATTTTACATATATACATATTTATTTTTTAATATTCTAT
1 TATATTTTACATATATACATACATATTTTTTAATATTCTAT
* * *
27130305 TATA-TTTATATATATACGTACATATTTTTTTATATT
1 TATATTTTACATATATACATACATATTTTTTAATATT
27130341 TTCGAAAATG
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
40 27 0.87
41 4 0.13
ACGTcount: A:0.34, C:0.06, G:0.01, T:0.58
Consensus pattern (41 bp):
TATATTTTACATATATACATACATATTTTTTAATATTCTAT
Found at i:27134035 original size:43 final size:43
Alignment explanation
Indices: 27133988--27134258 Score: 264
Period size: 43 Copynumber: 6.4 Consensus size: 43
27133978 TTTTAGAAAT
* * * * *
27133988 AAACGCCGCTAAAGAACAAGACTTTTAGCGGCGCTATTCCAAA
1 AAACGCCGCTAAAGAACAAGACCTTTAGCGGCACTTTTCCCAC
* *
27134031 AAACGCCGCTAAAGACCATGACCTTTAGCGGCACTTTTCCCAC
1 AAACGCCGCTAAAGAACAAGACCTTTAGCGGCACTTTTCCCAC
* * ** *
27134074 AAACGCCACTAAAGACCAAGACCTTTAGTAGCAC--TT-CTAC
1 AAACGCCGCTAAAGAACAAGACCTTTAGCGGCACTTTTCCCAC
* * * * * *
27134114 AAATGGCACTAAAGACCAAGACATTTAGCGGCACTTCTCCCAC
1 AAACGCCGCTAAAGAACAAGACCTTTAGCGGCACTTTTCCCAC
*
27134157 AAACGCCGCTAAAG-ACTATGACCTTTAGCGGCGA-TTTTCCCAC
1 AAACGCCGCTAAAGAAC-AAGACCTTTAGCGGC-ACTTTTCCCAC
* * * * **
27134200 AAACGCCTCTAAAGAACATGACCTTTACCGGCGCTTTTATCAC
1 AAACGCCGCTAAAGAACAAGACCTTTAGCGGCACTTTTCCCAC
27134243 AAACGCCGCTAAAGAA
1 AAACGCCGCTAAAGAA
27134259 TTAACCTTTT
Statistics
Matches: 189, Mismatches: 32, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
40 32 0.17
41 2 0.01
42 2 0.01
43 150 0.79
44 3 0.02
ACGTcount: A:0.34, C:0.30, G:0.16, T:0.20
Consensus pattern (43 bp):
AAACGCCGCTAAAGAACAAGACCTTTAGCGGCACTTTTCCCAC
Found at i:27134223 original size:126 final size:126
Alignment explanation
Indices: 27133996--27134226 Score: 349
Period size: 126 Copynumber: 1.8 Consensus size: 126
27133986 ATAAACGCCG
* *
27133996 CTAAAGAACAAGACTTTTAGCGGCGCTATTCCAAAAAACGCCGCTAAAGACCATGACCTTTAGCG
1 CTAAAGAACAAGACATTTAGCGGCACTATTCCAAAAAACGCCGCTAAAGACCATGACCTTTAGCG
*
27134061 GCACTTTTCCCACAAACGCCACTAAAGACCAAGACCTTTAGTAGCACTTCTACAAATGGCA
66 GCACTTTTCCCACAAACGCCACTAAAGAACAAGACCTTTAGTAGCACTTCTACAAATGGCA
* * * *
27134122 CTAAAGACCAAGACATTTAGCGGCACT-TCTCCCACAAACGCCGCTAAAGACTATGACCTTTAGC
1 CTAAAGAACAAGACATTTAGCGGCACTAT-TCCAAAAAACGCCGCTAAAGACCATGACCTTTAGC
* *
27134186 GGCGA-TTTTCCCACAAACGCCTCTAAAGAACATGACCTTTA
65 GGC-ACTTTTCCCACAAACGCCACTAAAGAACAAGACCTTTA
27134227 CCGGCGCTTT
Statistics
Matches: 94, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
125 1 0.01
126 92 0.98
127 1 0.01
ACGTcount: A:0.34, C:0.29, G:0.16, T:0.21
Consensus pattern (126 bp):
CTAAAGAACAAGACATTTAGCGGCACTATTCCAAAAAACGCCGCTAAAGACCATGACCTTTAGCG
GCACTTTTCCCACAAACGCCACTAAAGAACAAGACCTTTAGTAGCACTTCTACAAATGGCA
Found at i:27134289 original size:42 final size:43
Alignment explanation
Indices: 27134157--27134310 Score: 154
Period size: 43 Copynumber: 3.6 Consensus size: 43
27134147 CTTCTCCCAC
* * * ** *
27134157 AAACGCCGCTAAAG-ACTATGACCTTTAGCGGCGATTTTCCCAC
1 AAACGCCGCTAAAGAAC-ATAACCTTTACCGGCGCTTTTAGCAA
* * * *
27134200 AAACGCCTCTAAAGAACATGACCTTTACCGGCGCTTTTATCAC
1 AAACGCCGCTAAAGAACATAACCTTTACCGGCGCTTTTAGCAA
* *
27134243 AAACGCCGCTAAAGAA-TTAACCTTTTCCGGCGCTTCTT-GCAA
1 AAACGCCGCTAAAGAACATAACCTTTACCGGCGCTT-TTAGCAA
27134285 AAACGCCGCTAAA-AACATAACCTTTA
1 AAACGCCGCTAAAGAACATAACCTTTA
27134311 AAATATATAT
Statistics
Matches: 95, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
41 2 0.02
42 39 0.41
43 52 0.55
44 2 0.02
ACGTcount: A:0.32, C:0.29, G:0.15, T:0.24
Consensus pattern (43 bp):
AAACGCCGCTAAAGAACATAACCTTTACCGGCGCTTTTAGCAA
Found at i:27140953 original size:41 final size:41
Alignment explanation
Indices: 27140688--27140970 Score: 395
Period size: 41 Copynumber: 6.9 Consensus size: 41
27140678 TATGATAAAT
* *
27140688 CTGAGCATTAGCAGCGCTTTTCAAAAAACGCCGCTAAAGCC
1 CTGAGCATTAGCGGCGCTTTTTAAAAAACGCCGCTAAAGCC
* *
27140729 CTGAGCATTAGCGGCGCTTTTTGAAAAATGCCGCTAAAGCC
1 CTGAGCATTAGCGGCGCTTTTTAAAAAACGCCGCTAAAGCC
* * *
27140770 CTGAGCATTAGCGGCGCTTATTGAAAAATGCCGCTAAAGCC
1 CTGAGCATTAGCGGCGCTTTTTAAAAAACGCCGCTAAAGCC
* * *
27140811 CTAAGCATTAGCGGCGCTTATTAAAAAACGCCGCTAAATCC
1 CTGAGCATTAGCGGCGCTTTTTAAAAAACGCCGCTAAAGCC
* *
27140852 CTGAGCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGCC
1 CTGAGCATTAGCGGCGCTTTTTAAAAAACGCCGCTAAAGCC
*
27140893 CTGAGCATTAGCGGCGCTTTTTAAAAAACGCCGCTAAAACC
1 CTGAGCATTAGCGGCGCTTTTTAAAAAACGCCGCTAAAGCC
* *** * *
27140934 CTGAACATTAGCAATGCTTTTTCAAAATCGCCGCTAA
1 CTGAGCATTAGCGGCGCTTTTTAAAAAACGCCGCTAA
27140971 TGCCTTAAAA
Statistics
Matches: 220, Mismatches: 22, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 220 1.00
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (41 bp):
CTGAGCATTAGCGGCGCTTTTTAAAAAACGCCGCTAAAGCC
Found at i:27141065 original size:38 final size:39
Alignment explanation
Indices: 27141030--27141144 Score: 155
Period size: 40 Copynumber: 3.0 Consensus size: 39
27141020 CGCTTTTTGG
*
27141030 AAAA-CGCCGCTAATGC-TCATTTTTAGCTGCGTTTTTA
1 AAAAGCGCCGCTAATGCTTGATTTTTAGCTGCGTTTTTA
* *
27141067 AAAAGCGCCGCTAATACTTGATCTTTAG-TGGCGTTTTTTA
1 AAAAGCGCCGCTAATGCTTGATTTTTAGCT-GCG-TTTTTA
*
27141107 AAAAGCGCCGCTAATGCTTGATTTTTAGCGGCGTTTTT
1 AAAAGCGCCGCTAATGCTTGATTTTTAGCTGCGTTTTT
27141145 TATCCAAGCG
Statistics
Matches: 67, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
37 4 0.06
38 12 0.18
39 16 0.24
40 35 0.52
ACGTcount: A:0.23, C:0.19, G:0.20, T:0.37
Consensus pattern (39 bp):
AAAAGCGCCGCTAATGCTTGATTTTTAGCTGCGTTTTTA
Found at i:27141113 original size:40 final size:40
Alignment explanation
Indices: 27141016--27141146 Score: 151
Period size: 40 Copynumber: 3.3 Consensus size: 40
27141006 TAGGTTTTTC
** * * *
27141016 GCGGCGCTTTTTGGAAAA-CGCCGCTAATGC-TCATTTTTA
1 GCGGCG-TTTTTTAAAAAGCGCCGCTAATACTTGATCTTTA
*
27141055 GCTGCG-TTTTTAAAAAGCGCCGCTAATACTTGATCTTTA
1 GCGGCGTTTTTTAAAAAGCGCCGCTAATACTTGATCTTTA
* * *
27141094 GTGGCGTTTTTTAAAAAGCGCCGCTAATGCTTGATTTTTA
1 GCGGCGTTTTTTAAAAAGCGCCGCTAATACTTGATCTTTA
27141134 GCGGCGTTTTTTA
1 GCGGCGTTTTTTA
27141147 TCCAAGCGCC
Statistics
Matches: 78, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
37 8 0.10
38 11 0.14
39 16 0.21
40 43 0.55
ACGTcount: A:0.21, C:0.19, G:0.22, T:0.37
Consensus pattern (40 bp):
GCGGCGTTTTTTAAAAAGCGCCGCTAATACTTGATCTTTA
Found at i:27143754 original size:30 final size:30
Alignment explanation
Indices: 27143699--27143757 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
27143689 TACATATAAC
*
27143699 CCTTTAATCATTCATATTTGCATATCATAT
1 CCTTTAATCATTCATATTAGCATATCATAT
27143729 CCTTTAATCAATCTCA-ATTAG-ATATCATA
1 CCTTTAATC-AT-TCATATTAGCATATCATA
27143758 CCCTATAACC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
30 17 0.65
31 6 0.23
32 3 0.12
ACGTcount: A:0.34, C:0.20, G:0.03, T:0.42
Consensus pattern (30 bp):
CCTTTAATCATTCATATTAGCATATCATAT
Found at i:27155899 original size:25 final size:25
Alignment explanation
Indices: 27155866--27155925 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 25
27155856 TCGATAAGCC
*
27155866 CATACGAGCTG-AGAATCGGTAACCT
1 CATATGAGCTGCA-AATCGGTAACCT
*
27155891 C-TCATGAGCTGCAAATCGGTAAGCT
1 CAT-ATGAGCTGCAAATCGGTAACCT
27155916 CATATGAGCT
1 CATATGAGCT
27155926 ATGGTGAATC
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
24 1 0.03
25 27 0.90
26 2 0.07
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.23
Consensus pattern (25 bp):
CATATGAGCTGCAAATCGGTAACCT
Found at i:27163280 original size:3 final size:3
Alignment explanation
Indices: 27163272--27163299 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
27163262 CAGCAACATT
27163272 AGA AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA A
27163300 AAGGGAGCCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:27166870 original size:95 final size:95
Alignment explanation
Indices: 27166707--27167498 Score: 911
Period size: 95 Copynumber: 8.4 Consensus size: 95
27166697 TTAGTTTATT
* * * * *
27166707 TATCATGAAAAACCTTCTCTAAGTTAGCTGATTTAATATCGATGCTCCAAACAGCTCGCTACTTT
1 TATCATGAACAATCTTCTCTAAGTTAGCTGATTTAATATCGCTGCTCCAAACGGCTCGCTAATTT
*
27166772 AAGATCGCAAGTTAAGTTCATTTGATTTAC
66 AAGATCGCAAGCTAAGTTCATTTGATTTAC
* * *
27166802 TATCATGAACAATCTCCTCTAAGTTAGCTTATTTAATATCGCTGCTCCAAACAGCTCGCTAATTT
1 TATCATGAACAATCTTCTCTAAGTTAGCTGATTTAATATCGCTGCTCCAAACGGCTCGCTAATTT
* *
27166867 AAGATCAC-AGCTTAAGTTTATTTGATTTAC
66 AAGATCGCAAGC-TAAGTTCATTTGATTTAC
* * * * *
27166897 TATTATAAACAATCATCTCTAAGTTAGCTGATTTAATATTGCTGCTCCAAACGGTTCGCTAATTT
1 TATCATGAACAATCTTCTCTAAGTTAGCTGATTTAATATCGCTGCTCCAAACGGCTCGCTAATTT
* * * *
27166962 AAGATCACAACCAAAGTTCATTTAATTTAC
66 AAGATCGCAAGCTAAGTTCATTTGATTTAC
* * * *
27166992 TATCATGAACAATCTTCTCTGAGTTAACTGATTTAATATCGTTGCTCCAAACGGCTCACTAATTT
1 TATCATGAACAATCTTCTCTAAGTTAGCTGATTTAATATCGCTGCTCCAAACGGCTCGCTAATTT
*
27167057 AAGAT--CATAGCTTGAGTTCATTTGATTTAC
66 AAGATCGCA-AGC-TAAGTTCATTTGATTTAC
* * * * * * *
27167087 TATCATGAACAATCTTCTTTGAGTTAACTGATTTAATATCACTACTCCAAACGGCTCACTCATTT
1 TATCATGAACAATCTTCTCTAAGTTAGCTGATTTAATATCGCTGCTCCAAACGGCTCGCTAATTT
27167152 AAGATCGC-AGCCTAAGTTCATTTGATTTAC
66 AAGATCGCAAG-CTAAGTTCATTTGATTTAC
* * * * * *
27167182 TATCATGAACAATCTTCTCTGAGTTAGTTTATTTAATATTGTTGCTCCAAACGGCTCGCTGATTT
1 TATCATGAACAATCTTCTCTAAGTTAGCTGATTTAATATCGCTGCTCCAAACGGCTCGCTAATTT
* *
27167247 AATATCAC-AGTCTAAGTTCATTTGATTTAC
66 AAGATCGCAAG-CTAAGTTCATTTGATTTAC
* *
27167277 TATCATG-ACTAATCTTCTCTGAGTTAGCTGATTTAATATCGCTGCTCCAAACGACT-GCTAATT
1 TATCATGAAC-AATCTTCTCTAAGTTAGCTGATTTAATATCGCTGCTCCAAACGGCTCGCTAATT
* *
27167340 TAAGATAGCAACCTAAGTTCATTTGATTTAC
65 TAAGATCGCAAGCTAAGTTCATTTGATTTAC
* * * * * * ** *
27167371 TATCATGAATAGTCTTCTCTAAGTTA-CTTGAATTGATATCTCTGCTTCAAACAACTCACTAATT
1 TATCATGAACAATCTTCTCTAAGTTAGC-TGATTTAATATCGCTGCTCCAAACGGCTCGCTAATT
* * *
27167435 TAATATTGCAA-CTAAGTTCATTTGATTTAT
65 TAAGATCGCAAGCTAAGTTCATTTGATTTAC
* * *
27167465 TATCATGAAAAATCTTAC-CTGAGTTAGTTGATTT
1 TATCATGAACAATCTT-CTCTAAGTTAGCTGATTT
27167499 CCAAACCACC
Statistics
Matches: 603, Mismatches: 80, Indels: 29
0.85 0.11 0.04
Matches are distributed among these distances:
93 3 0.00
94 125 0.21
95 471 0.78
96 3 0.00
97 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.12, T:0.38
Consensus pattern (95 bp):
TATCATGAACAATCTTCTCTAAGTTAGCTGATTTAATATCGCTGCTCCAAACGGCTCGCTAATTT
AAGATCGCAAGCTAAGTTCATTTGATTTAC
Found at i:27167218 original size:285 final size:285
Alignment explanation
Indices: 27166707--27167498 Score: 1015
Period size: 285 Copynumber: 2.8 Consensus size: 285
27166697 TTAGTTTATT
* * * * *
27166707 TATCATGAAAAACCTTCTCTAAGTTAGCTGATTTAATATCGATGCTCCAAACAGCTCGCTACTTT
1 TATCATGAACAATCTTCTCTGAGTTAGCTGATTTAATATCGATGCTCCAAACGGCTCGCTAATTT
* * *
27166772 AAGATCGCAAG-TTAAGTTCATTTGATTTACTATCATGAACAATCTCCTCTAAGTTAGCTTATTT
66 AAGAT-GCAAGCTTAAGTTCATTTGATTTACTATCATGAACAATCTTCTCTAAGTTAACTGATTT
* * * * * *
27166836 AATATCGCTGCTCCAAACAGCTCGCTAATTTAAGATCACAGCTTAAGTTTATTTGATTTACTATT
130 AATATCACTGCTCCAAACAGCTCACTAATTTAAGATCGCAGCCTAAGTTCATTTGATTTACTATC
* * * * *
27166901 ATAAACAATCATCTCTAAGTTAGCTGATTTAATATTGCTGCTCCAAACGGTTCGCTAATTTAAGA
195 ATGAACAATCTTCTCTGAGTTAGTTGATTTAATATTGCTGCTCCAAACGGCTCGCTAATTTAAGA
27166966 TCACAACCAAAGTTCATTTAATTTAC
260 TCACAACCAAAGTTCATTTAATTTAC
* * *
27166992 TATCATGAACAATCTTCTCTGAGTTAACTGATTTAATATCGTTGCTCCAAACGGCTCACTAATTT
1 TATCATGAACAATCTTCTCTGAGTTAGCTGATTTAATATCGATGCTCCAAACGGCTCGCTAATTT
* * *
27167057 AAGAT-CATAGCTTGAGTTCATTTGATTTACTATCATGAACAATCTTCTTTGAGTTAACTGATTT
66 AAGATGCA-AGCTTAAGTTCATTTGATTTACTATCATGAACAATCTTCTCTAAGTTAACTGATTT
* * *
27167121 AATATCACTACTCCAAACGGCTCACTCATTTAAGATCGCAGCCTAAGTTCATTTGATTTACTATC
130 AATATCACTGCTCCAAACAGCTCACTAATTTAAGATCGCAGCCTAAGTTCATTTGATTTACTATC
* * * *
27167186 ATGAACAATCTTCTCTGAGTTAGTTTATTTAATATTGTTGCTCCAAACGGCTCGCTGATTTAATA
195 ATGAACAATCTTCTCTGAGTTAGTTGATTTAATATTGCTGCTCCAAACGGCTCGCTAATTTAAGA
** * *
27167251 TCACAGTCTAAGTTCATTTGATTTAC
260 TCACAACCAAAGTTCATTTAATTTAC
* *
27167277 TATCATG-ACTAATCTTCTCTGAGTTAGCTGATTTAATATCGCTGCTCCAAACGACT-GCTAATT
1 TATCATGAAC-AATCTTCTCTGAGTTAGCTGATTTAATATCGATGCTCCAAACGGCTCGCTAATT
* * * *
27167340 TAAGATAGCAA-CCTAAGTTCATTTGATTTACTATCATGAATAGTCTTCTCTAAGTT-ACTTGAA
65 TAAGAT-GCAAGCTTAAGTTCATTTGATTTACTATCATGAACAATCTTCTCTAAGTTAAC-TGAT
* * * * * * * *
27167403 TTGATATCTCTGCTTCAAACAACTCACTAATTTAATATTGCA-ACTAAGTTCATTTGATTTATTA
128 TTAATATCACTGCTCCAAACAGCTCACTAATTTAAGATCGCAGCCTAAGTTCATTTGATTTACTA
*
27167467 TCATGAAAAATCTTAC-CTGAGTTAGTTGATTT
193 TCATGAACAATCTT-CTCTGAGTTAGTTGATTT
27167499 CCAAACCACC
Statistics
Matches: 440, Mismatches: 60, Indels: 16
0.85 0.12 0.03
Matches are distributed among these distances:
283 52 0.12
284 92 0.21
285 294 0.67
286 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.12, T:0.38
Consensus pattern (285 bp):
TATCATGAACAATCTTCTCTGAGTTAGCTGATTTAATATCGATGCTCCAAACGGCTCGCTAATTT
AAGATGCAAGCTTAAGTTCATTTGATTTACTATCATGAACAATCTTCTCTAAGTTAACTGATTTA
ATATCACTGCTCCAAACAGCTCACTAATTTAAGATCGCAGCCTAAGTTCATTTGATTTACTATCA
TGAACAATCTTCTCTGAGTTAGTTGATTTAATATTGCTGCTCCAAACGGCTCGCTAATTTAAGAT
CACAACCAAAGTTCATTTAATTTAC
Found at i:27169383 original size:6 final size:6
Alignment explanation
Indices: 27169367--27169397 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
27169357 TATGTTTCCA
*
27169367 AAAATG GAAATG AAAATG AAAATG AAAATG A
1 AAAATG AAAATG AAAATG AAAATG AAAATG A
27169398 TCCGTTTTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.19, T:0.16
Consensus pattern (6 bp):
AAAATG
Found at i:27169597 original size:26 final size:26
Alignment explanation
Indices: 27169544--27169615 Score: 92
Period size: 26 Copynumber: 2.8 Consensus size: 26
27169534 TATTTTCTTG
* *
27169544 AAATTTTA-CAAGGGGAAAATCGTTA
1 AAATTTTACCAAGGGTAAAATCGTAA
*
27169569 AAATTTTACCAATGGTAAAATCGTAA
1 AAATTTTACCAAGGGTAAAATCGTAA
* *
27169595 AAATTTTGCTAAGGGTAAAAT
1 AAATTTTACCAAGGGTAAAAT
27169616 AGGGATGATA
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
25 8 0.20
26 32 0.80
ACGTcount: A:0.44, C:0.08, G:0.17, T:0.31
Consensus pattern (26 bp):
AAATTTTACCAAGGGTAAAATCGTAA
Found at i:27170783 original size:8 final size:8
Alignment explanation
Indices: 27170770--27170803 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
27170760 AAGGTATGAG
27170770 TATGTATA
1 TATGTATA
27170778 TATGTATA
1 TATGTATA
* *
27170786 TGTATATA
1 TATGTATA
27170794 TATGTATA
1 TATGTATA
27170802 TA
1 TA
27170804 ATGCTCGAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (8 bp):
TATGTATA
Found at i:27171205 original size:75 final size:75
Alignment explanation
Indices: 27171074--27171214 Score: 169
Period size: 75 Copynumber: 1.9 Consensus size: 75
27171064 GCTTACATAT
* * * * *
27171074 ATGTACATGTTCTTTTATTGAATTTAGGAAGGACATTTATATAATTTTATATAAGATTCAATTAT
1 ATGTACATGTTCTTGTAATGAATTTAAGAAGGAAATTTATATAATTGTATATAAGATTCAATTAT
27171139 GCAGGTATAC
66 GCAGGTATAC
* * * *
27171149 ATGTATATGTTCTTGTAATGAATTTAAGTATGAAATTTATAT-A-TGTATATGGAAGATTCGATT
1 ATGTACATGTTCTTGTAATGAATTTAAGAAGGAAATTTATATAATTGTATAT--AAGATTCAATT
27171212 ATG
64 ATG
27171215 TATATATATT
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
73 6 0.11
74 1 0.02
75 48 0.87
ACGTcount: A:0.35, C:0.06, G:0.16, T:0.43
Consensus pattern (75 bp):
ATGTACATGTTCTTGTAATGAATTTAAGAAGGAAATTTATATAATTGTATATAAGATTCAATTAT
GCAGGTATAC
Found at i:27171344 original size:41 final size:41
Alignment explanation
Indices: 27171296--27171375 Score: 124
Period size: 41 Copynumber: 2.0 Consensus size: 41
27171286 TGATCGAATG
* * *
27171296 TTTCAGACTTTACGTCTAGCAGGTTTGATGCCGGTGAAATA
1 TTTCAGACTTTACGTCTAGCAGGCTTAATGCCGATGAAATA
*
27171337 TTTCAGACTTTATGTCTAGCAGGCTTAATGCCGATGAAA
1 TTTCAGACTTTACGTCTAGCAGGCTTAATGCCGATGAAA
27171376 CAATTCAGTC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (41 bp):
TTTCAGACTTTACGTCTAGCAGGCTTAATGCCGATGAAATA
Found at i:27171600 original size:31 final size:31
Alignment explanation
Indices: 27171559--27171663 Score: 90
Period size: 31 Copynumber: 3.4 Consensus size: 31
27171549 GGCATATGTA
*
27171559 TATATGCATTCAGCTATTCATGTTTAAAGTG
1 TATATACATTCAGCTATTCATGTTTAAAGTG
* ** * *
27171590 TATATACATTC-GGTGATAAAAT-TTGTTATGTG
1 TATATACATTCAGCT-AT-TCATGTT-TAAAGTG
*
27171622 TATA-AGCATTCAACTATTCATGTTTAAAGTG
1 TATATA-CATTCAGCTATTCATGTTTAAAGTG
27171653 TATATACATTC
1 TATATACATTC
27171664 GATGATAATA
Statistics
Matches: 55, Mismatches: 12, Indels: 14
0.68 0.15 0.17
Matches are distributed among these distances:
30 2 0.04
31 31 0.56
32 21 0.38
33 1 0.02
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.42
Consensus pattern (31 bp):
TATATACATTCAGCTATTCATGTTTAAAGTG
Found at i:27171603 original size:69 final size:67
Alignment explanation
Indices: 27171519--27171738 Score: 250
Period size: 63 Copynumber: 3.2 Consensus size: 67
27171509 TTGAAGAACA
* *
27171519 TGTATATACAGTCGGTGATAATACTTGTTAGGCATATGTATATATGCATTCAGCTATTCATGTTT
1 TGTATATACATTCGGTGATAATATTTGTTA-GCATATGTATATA-GCATTCAGCTATTCATGTTT
27171584 AAAG
64 AAAG
* * *
27171588 TGTATATACATTCGGTGATAAAATTTGTT---ATGTGTATA-AGCATTCAACTATTCATGTTTAA
1 TGTATATACATTCGGTGATAATATTTGTTAGCATATGTATATAGCATTCAGCTATTCATGTTTAA
27171649 AG
66 AG
* * * *
27171651 TGTATATACATTCGATGATAATATTTGTTAAGCATATATGTATATACACATTCGGCTATTCAAGT
1 TGTATATACATTCGGTGATAATATTTGTT-AGC--ATATGTATATA-GCATTCAGCTATTCATG-
*
27171716 TTTAAAT
61 TTTAAAG
*
27171723 TGTATATGCATTCGGT
1 TGTATATACATTCGGT
27171739 TTTAAGTGTT
Statistics
Matches: 127, Mismatches: 15, Indels: 15
0.81 0.10 0.10
Matches are distributed among these distances:
63 50 0.39
64 1 0.01
65 8 0.06
69 34 0.27
70 1 0.01
71 13 0.10
72 20 0.16
ACGTcount: A:0.32, C:0.11, G:0.16, T:0.41
Consensus pattern (67 bp):
TGTATATACATTCGGTGATAATATTTGTTAGCATATGTATATAGCATTCAGCTATTCATGTTTAA
AG
Found at i:27174277 original size:27 final size:27
Alignment explanation
Indices: 27174247--27174298 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
27174237 CCTTGTAGGG
*
27174247 TTCGGCACAAAGACTTTTCTTTCATGA
1 TTCGCCACAAAGACTTTTCTTTCATGA
**
27174274 TTCGCCACAAAGGTTTTTCTTTCAT
1 TTCGCCACAAAGACTTTTCTTTCAT
27174299 AACGTGTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.23, C:0.23, G:0.13, T:0.40
Consensus pattern (27 bp):
TTCGCCACAAAGACTTTTCTTTCATGA
Found at i:27177672 original size:45 final size:45
Alignment explanation
Indices: 27177621--27177707 Score: 156
Period size: 45 Copynumber: 1.9 Consensus size: 45
27177611 TTAAACAAAA
* *
27177621 CTAACTTCATATATTTAAATATTCCACAAGTTTGTTTGATTAGTC
1 CTAACTTCATAAACTTAAATATTCCACAAGTTTGTTTGATTAGTC
27177666 CTAACTTCATAAACTTAAATATTCCACAAGTTTGTTTGATTA
1 CTAACTTCATAAACTTAAATATTCCACAAGTTTGTTTGATTA
27177708 CTCTTATGGT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.33, C:0.16, G:0.08, T:0.43
Consensus pattern (45 bp):
CTAACTTCATAAACTTAAATATTCCACAAGTTTGTTTGATTAGTC
Found at i:27184130 original size:13 final size:14
Alignment explanation
Indices: 27184105--27184133 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
27184095 ACGAATTAAC
27184105 TTTTCATAAAAATA
1 TTTTCATAAAAATA
27184119 TTTTCA-AAAAATA
1 TTTTCATAAAAATA
27184132 TT
1 TT
27184134 AATAAAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.45
Consensus pattern (14 bp):
TTTTCATAAAAATA
Found at i:27186225 original size:22 final size:21
Alignment explanation
Indices: 27186200--27186244 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
27186190 TCAAATTATC
* *
27186200 ATATAGACATTTATTTAATGTT
1 ATATACAC-TTTATTTAATATT
*
27186222 ATATACACTTTTTTTAATATT
1 ATATACACTTTATTTAATATT
27186243 AT
1 AT
27186245 GTTTTTATTG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.36, C:0.07, G:0.04, T:0.53
Consensus pattern (21 bp):
ATATACACTTTATTTAATATT
Found at i:27186683 original size:18 final size:17
Alignment explanation
Indices: 27186633--27186684 Score: 52
Period size: 18 Copynumber: 3.0 Consensus size: 17
27186623 ACCTATAAAA
*
27186633 AAAATTAATATGAAAAGT
1 AAAATTAATATGAATA-T
**
27186651 AAAACCAATAT-AATAT
1 AAAATTAATATGAATAT
27186667 ATAAATTAATATGAATAT
1 A-AAATTAATATGAATAT
27186685 TGAGAGATTA
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
16 2 0.07
17 11 0.41
18 14 0.52
ACGTcount: A:0.60, C:0.04, G:0.06, T:0.31
Consensus pattern (17 bp):
AAAATTAATATGAATAT
Found at i:27190857 original size:37 final size:37
Alignment explanation
Indices: 27190807--27190882 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
27190797 TAATGTTCCC
27190807 TTCATGTTATGGATTCCTCTAGTGAATCGAACTCTCT
1 TTCATGTTATGGATTCCTCTAGTGAATCGAACTCTCT
27190844 TTCATGTTATGGATTCCTCTAGTGAATCGAACTCTCT
1 TTCATGTTATGGATTCCTCTAGTGAATCGAACTCTCT
27190881 TT
1 TT
27190883 TACTTCCTAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.21, C:0.21, G:0.16, T:0.42
Consensus pattern (37 bp):
TTCATGTTATGGATTCCTCTAGTGAATCGAACTCTCT
Found at i:27196219 original size:21 final size:21
Alignment explanation
Indices: 27196193--27196235 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
27196183 AAGACCAATC
27196193 ATGAGATGATTGTAATTACAT
1 ATGAGATGATTGTAATTACAT
27196214 ATGAGATGATTGTAATTACAT
1 ATGAGATGATTGTAATTACAT
27196235 A
1 A
27196236 CTCGTTTTAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.40, C:0.05, G:0.19, T:0.37
Consensus pattern (21 bp):
ATGAGATGATTGTAATTACAT
Found at i:27199489 original size:25 final size:25
Alignment explanation
Indices: 27199452--27199505 Score: 90
Period size: 25 Copynumber: 2.2 Consensus size: 25
27199442 TTAAGGTTAT
* *
27199452 CGATTTATGGCTCGTGAGAGCATAC
1 CGATTTATAGCTCATGAGAGCATAC
27199477 CGATTTATAGCTCATGAGAGCATAC
1 CGATTTATAGCTCATGAGAGCATAC
27199502 CGAT
1 CGAT
27199506 CTTCAGCTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (25 bp):
CGATTTATAGCTCATGAGAGCATAC
Found at i:27199513 original size:25 final size:25
Alignment explanation
Indices: 27199452--27199515 Score: 76
Period size: 25 Copynumber: 2.6 Consensus size: 25
27199442 TTAAGGTTAT
** *
27199452 CGATTTATGGCTCGTGAGAGCATAC
1 CGATTTACAGCTCATGAGAGCATAC
*
27199477 CGATTTATAGCTCATGAGAGCATAC
1 CGATTTACAGCTCATGAGAGCATAC
27199502 CGATCTT-CAGCTCA
1 CGAT-TTACAGCTCA
27199516 AATGACCATA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
25 33 0.94
26 2 0.06
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (25 bp):
CGATTTACAGCTCATGAGAGCATAC
Found at i:27201148 original size:23 final size:24
Alignment explanation
Indices: 27201105--27201159 Score: 69
Period size: 23 Copynumber: 2.3 Consensus size: 24
27201095 ATTTATTTTA
* *
27201105 AAAATAAATATATATTAAAAT-AG
1 AAAATAAATATAAATTAAAATAAC
27201128 AAAATAAATATAAAATT-AAATAAC
1 AAAATAAATAT-AAATTAAAATAAC
27201152 AAAATAAA
1 AAAATAAA
27201160 AATTTACTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 15 0.54
24 13 0.46
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.25
Consensus pattern (24 bp):
AAAATAAATATAAATTAAAATAAC
Found at i:27203147 original size:29 final size:28
Alignment explanation
Indices: 27203088--27203156 Score: 77
Period size: 29 Copynumber: 2.4 Consensus size: 28
27203078 TAATAACAAT
* *
27203088 TTTAAATTAAAACAAAAAAGGAAATGAC
1 TTTAAATTAAAAAAAAAAAGGAAAAGAC
* *
27203116 TTTAATTTCAAAAAAAAAAAGGAAAAGGC
1 TTTAAATT-AAAAAAAAAAAGGAAAAGAC
27203145 TTTCAAA-TAAAA
1 TTT-AAATTAAAA
27203157 TAAGTAGTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
28 11 0.32
29 21 0.62
30 2 0.06
ACGTcount: A:0.59, C:0.07, G:0.10, T:0.23
Consensus pattern (28 bp):
TTTAAATTAAAAAAAAAAAGGAAAAGAC
Found at i:27204532 original size:14 final size:15
Alignment explanation
Indices: 27204510--27204586 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
27204500 CAATCAAACA
27204510 CCAGAAAAT-ATTTT
1 CCAGAAAATCATTTT
*
27204524 CCAGTAAATCATTTT
1 CCAGAAAATCATTTT
*
27204539 ACAGAAAAGTAAAACATTTT
1 CCAGAAAA-T----CATTTT
27204559 CCA-AAAATCATTTT
1 CCAGAAAATCATTTT
* *
27204573 ACGGAAAAT-ATTTT
1 CCAGAAAATCATTTT
27204587 ACTGGCAATC
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 20 0.40
15 16 0.32
16 1 0.02
18 1 0.02
19 4 0.08
20 8 0.16
ACGTcount: A:0.44, C:0.14, G:0.08, T:0.34
Consensus pattern (15 bp):
CCAGAAAATCATTTT
Found at i:27204570 original size:34 final size:35
Alignment explanation
Indices: 27204514--27204580 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
27204504 CAAACACCAG
* *
27204514 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGAAAATCATTTTACAGAAAAGT
*
27204549 AAAACATTTTCCA-AAAATCATTTTACGGAAAA
1 AAAACATTTTCCAGAAAATCATTTTACAGAAAA
27204581 TATTTTACTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.48, C:0.13, G:0.07, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGAAAATCATTTTACAGAAAAGT
Found at i:27205242 original size:12 final size:12
Alignment explanation
Indices: 27205227--27205251 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
27205217 ATAATTTATT
27205227 AAAAAATTATAA
1 AAAAAATTATAA
27205239 AAAAAATTATAA
1 AAAAAATTATAA
27205251 A
1 A
27205252 TTTTATAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (12 bp):
AAAAAATTATAA
Found at i:27214385 original size:22 final size:23
Alignment explanation
Indices: 27214360--27214415 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 23
27214350 TTAACCTTTA
27214360 TTTTATAAATTTTGTTCA-TAAT
1 TTTTATAAATTTTGTTCATTAAT
* * *
27214382 TTTTATAACTTTTTTTTATTAAT
1 TTTTATAAATTTTGTTCATTAAT
27214405 TTTTA-AAATTT
1 TTTTATAAATTT
27214416 AAAAGGGCTT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
22 20 0.69
23 9 0.31
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.64
Consensus pattern (23 bp):
TTTTATAAATTTTGTTCATTAAT
Found at i:27215110 original size:17 final size:18
Alignment explanation
Indices: 27215088--27215130 Score: 61
Period size: 19 Copynumber: 2.4 Consensus size: 18
27215078 ATAAAATTAC
27215088 ATAAAAAAATT-TAAAAT
1 ATAAAAAAATTATAAAAT
*
27215105 ATAAAAGAAATTATAAATT
1 ATAAAA-AAATTATAAAAT
27215124 ATAAAAA
1 ATAAAAA
27215131 TATATGTAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 6 0.26
18 6 0.26
19 11 0.48
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (18 bp):
ATAAAAAAATTATAAAAT
Found at i:27215122 original size:18 final size:18
Alignment explanation
Indices: 27215088--27215130 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
27215078 ATAAAATTAC
27215088 ATAAAAAAATTTAAAA-T
1 ATAAAAAAATTTAAAATT
27215105 ATAAAAGAAA-TTATAAATT
1 ATAAAA-AAATTTA-AAATT
27215124 ATAAAAA
1 ATAAAAA
27215131 TATATGTAGC
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
17 9 0.39
18 7 0.30
19 7 0.30
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (18 bp):
ATAAAAAAATTTAAAATT
Found at i:27221603 original size:5 final size:6
Alignment explanation
Indices: 27221577--27221611 Score: 52
Period size: 6 Copynumber: 5.5 Consensus size: 6
27221567 AAAATCTTCG
27221577 AATACAA AATGAAA AATAAA AATAAA AATAAA AAT
1 AATA-AA AAT-AAA AATAAA AATAAA AATAAA AAT
27221612 GGAAAACCCC
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
6 18 0.67
7 8 0.30
8 1 0.04
ACGTcount: A:0.77, C:0.03, G:0.03, T:0.17
Consensus pattern (6 bp):
AATAAA
Found at i:27221603 original size:12 final size:13
Alignment explanation
Indices: 27221577--27221617 Score: 57
Period size: 12 Copynumber: 3.1 Consensus size: 13
27221567 AAAATCTTCG
27221577 AATACAAAATGAAA
1 AATA-AAAATGAAA
27221591 AATAAAAAT-AAA
1 AATAAAAATGAAA
27221603 AATAAAAATGGAAA
1 AATAAAAAT-GAAA
27221617 A
1 A
27221618 CCCCCTCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 12 0.48
13 5 0.20
14 8 0.32
ACGTcount: A:0.76, C:0.02, G:0.07, T:0.15
Consensus pattern (13 bp):
AATAAAAATGAAA
Found at i:27226880 original size:12 final size:12
Alignment explanation
Indices: 27226857--27226929 Score: 58
Period size: 12 Copynumber: 6.0 Consensus size: 12
27226847 CAGATCCAAT
27226857 TCAAAA-AAAAA
1 TCAAAATAAAAA
27226868 TCAAAATAAAAA
1 TCAAAATAAAAA
*
27226880 TCAAAAGACAAAA
1 TCAAAATA-AAAA
** *
27226893 AAAAGAAGAAAAA
1 TCAA-AATAAAAA
** *
27226906 GAAAAATCAAAA
1 TCAAAATAAAAA
27226918 TCAAAATAAAAA
1 TCAAAATAAAAA
27226930 AATGAAATAA
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
11 6 0.12
12 27 0.54
13 13 0.26
14 4 0.08
ACGTcount: A:0.77, C:0.08, G:0.05, T:0.10
Consensus pattern (12 bp):
TCAAAATAAAAA
Found at i:27226918 original size:38 final size:36
Alignment explanation
Indices: 27226870--27226947 Score: 95
Period size: 36 Copynumber: 2.1 Consensus size: 36
27226860 AAAAAAAATC
27226870 AAAATAAAAATCAAAAGACAAAAAAAAGAAGA-AAAAGA
1 AAAATAAAAATC-AAA-ACAAAAAAAAGAA-ATAAAAGA
* * *
27226908 AAAATCAAAATCAAAATAAAAAAATGAAATAAAAGA
1 AAAATAAAAATCAAAACAAAAAAAAGAAATAAAAGA
27226944 AAAA
1 AAAA
27226948 AGAAAGAGAA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
35 1 0.03
36 21 0.58
37 3 0.08
38 11 0.31
ACGTcount: A:0.78, C:0.05, G:0.08, T:0.09
Consensus pattern (36 bp):
AAAATAAAAATCAAAACAAAAAAAAGAAATAAAAGA
Found at i:27226971 original size:15 final size:13
Alignment explanation
Indices: 27226941--27226965 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
27226931 ATGAAATAAA
27226941 AGAAAAAAGAAAG
1 AGAAAAAAGAAAG
27226954 AGAAAAAAGAAA
1 AGAAAAAAGAAA
27226966 AGGAGAGGTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (13 bp):
AGAAAAAAGAAAG
Found at i:27227335 original size:7 final size:7
Alignment explanation
Indices: 27227318--27227368 Score: 52
Period size: 7 Copynumber: 7.0 Consensus size: 7
27227308 ATTTCAAAAA
27227318 AAAAGATG
1 AAAA-ATG
27227326 AAAAATG
1 AAAAATG
27227333 -AAAATG
1 AAAAATG
27227339 AAAAATG
1 AAAAATG
27227346 AAAAAAATG
1 --AAAAATG
27227355 AAAAA-G
1 AAAAATG
27227361 TAAAAATG
1 -AAAAATG
27227369 GAGAGGCTAA
Statistics
Matches: 38, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
6 7 0.18
7 19 0.50
8 5 0.13
9 7 0.18
ACGTcount: A:0.71, C:0.00, G:0.16, T:0.14
Consensus pattern (7 bp):
AAAAATG
Found at i:27227339 original size:13 final size:13
Alignment explanation
Indices: 27227323--27227349 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
27227313 AAAAAAAAAG
27227323 ATGAAAAATGAAA
1 ATGAAAAATGAAA
27227336 ATGAAAAATGAAA
1 ATGAAAAATGAAA
27227349 A
1 A
27227350 AAATGAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.70, C:0.00, G:0.15, T:0.15
Consensus pattern (13 bp):
ATGAAAAATGAAA
Found at i:27227342 original size:22 final size:22
Alignment explanation
Indices: 27227326--27227368 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
27227316 AAAAAAGATG
27227326 AAAAATGAAAATGAAAAATGAA
1 AAAAATGAAAATGAAAAATGAA
*
27227348 AAAAATGAAAAAGTAAAAATG
1 AAAAATGAAAATG-AAAAATG
27227369 GAGAGGCTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.72, C:0.00, G:0.14, T:0.14
Consensus pattern (22 bp):
AAAAATGAAAATGAAAAATGAA
Found at i:27227366 original size:16 final size:16
Alignment explanation
Indices: 27227316--27227359 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
27227306 GAATTTCAAA
27227316 AAAAAAGATGAAAAATG
1 AAAAAA-ATGAAAAATG
27227333 ---AAAATGAAAAATG
1 AAAAAAATGAAAAATG
27227346 AAAAAAATGAAAAA
1 AAAAAAATGAAAAA
27227360 GTAAAAATGG
Statistics
Matches: 24, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
13 10 0.42
14 3 0.12
16 11 0.46
ACGTcount: A:0.75, C:0.00, G:0.14, T:0.11
Consensus pattern (16 bp):
AAAAAAATGAAAAATG
Found at i:27228665 original size:44 final size:44
Alignment explanation
Indices: 27228568--27228671 Score: 104
Period size: 44 Copynumber: 2.4 Consensus size: 44
27228558 AAAAATTTCA
**
27228568 GATCTTATCTCCCTGAGATTACAACGGAGCAGATTGAAGCTAGT
1 GATCTTATCTCCCTGAGATTACAACGGAGCAGATTGAAAATAGT
* * ** *
27228612 AATCCTATCTCCCTGAGATTACAGTGGAGCGGATT-AAAATAAAG-
1 GATCTTATCTCCCTGAGATTACAACGGAGCAGATTGAAAAT--AGT
*
27228656 GATCTTATCTCTCTGA
1 GATCTTATCTCCCTGA
27228672 AGTTATAGTA
Statistics
Matches: 48, Mismatches: 10, Indels: 4
0.77 0.16 0.06
Matches are distributed among these distances:
43 3 0.06
44 43 0.90
45 2 0.04
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (44 bp):
GATCTTATCTCCCTGAGATTACAACGGAGCAGATTGAAAATAGT
Found at i:27228832 original size:50 final size:50
Alignment explanation
Indices: 27228773--27229127 Score: 256
Period size: 50 Copynumber: 7.1 Consensus size: 50
27228763 GCAGTAGAGC
*
27228773 AGATTAAAGCCACATCGGAGAATCTCGCTTCCCCGACATTACAGTTAAAA
1 AGATTAAAGCCACATCGGAGAATCTCGCTTCCCCGACATTGCAGTTAAAA
* * * * * * * ** **
27228823 AGATTAAAGCCAC-GCGGCGAATC-CTACTTCTCTGGCAGTGCAGTGGAGC
1 AGATTAAAGCCACATCGGAGAATCTC-GCTTCCCCGACATTGCAGTTAAAA
* *
27228872 AGATTAAAGCCACATCAGTGAATCTCGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACATCGGAGAATCTCGCTTCCCCGACATTGCAGTTAAAA
* * * *** ** **
27228922 AGATTAAAGCCACAACGGCA-AATC-CTACTTCCCTTG-TGGTGCAGTGGAGC
1 AGATTAAAGCCACATCGG-AGAATCTC-GCTTCCC-CGACATTGCAGTTAAAA
*
27228972 AGATTAAAGCCACATCGGTGAATCTCGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACATCGGAGAATCTCGCTTCCCCGACATTGCAGTTAAAA
* * * ** * ** *** *
27229022 AGATTAAAGCTACAGC-AATGAATCTTAC-TCCCCAAGCGGTGCAGAGGAAT
1 AGATTAAAGCCACATCGGA-GAATCTCGCTTCCCCGA-CATTGCAGTTAAAA
* *
27229072 AGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACATCGGAGAATCTCGCTTCCCCGACATTGCAGTTAAAA
27229122 AGATTA
1 AGATTA
27229128 GAGCTATAAT
Statistics
Matches: 220, Mismatches: 72, Indels: 26
0.69 0.23 0.08
Matches are distributed among these distances:
48 1 0.00
49 43 0.20
50 167 0.76
51 9 0.04
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.23
Consensus pattern (50 bp):
AGATTAAAGCCACATCGGAGAATCTCGCTTCCCCGACATTGCAGTTAAAA
Found at i:27228993 original size:100 final size:100
Alignment explanation
Indices: 27228744--27229251 Score: 615
Period size: 100 Copynumber: 5.1 Consensus size: 100
27228734 AGAATTACAG
* * * *
27228744 ATCCTACTTCCTTGGCGGTGCAGTAGAGCAGATTAAAGCCACATCGGAGAATCTCGCTTCCCCGA
1 ATCCTACTTCCCTAGCGGTGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTCGCTTCCCCGA
* *
27228809 CATTACAGTTAAAAAGATTAAAGCCAC-GCGGCGA
66 CATTGCAGTTAAAAAGATTAAAGCCACAACGGCGA
* * * *
27228843 ATCCTACTTCTCTGGCAGTGCAGTGGAGCAGATTAAAGCCACATCAGTGAATCTCGCTTCCCCGA
1 ATCCTACTTCCCTAGCGGTGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTCGCTTCCCCGA
*
27228908 CATTGCAGTTAAAAAGATTAAAGCCACAACGGCAA
66 CATTGCAGTTAAAAAGATTAAAGCCACAACGGCGA
* *
27228943 ATCCTACTTCCCTTGTGGTGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTCGCTTCCCCGA
1 ATCCTACTTCCCTAGCGGTGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTCGCTTCCCCGA
* * ***
27229008 CATTGCAGTTAAAAAGATTAAAGCTACAGCAATGA
66 CATTGCAGTTAAAAAGATTAAAGCCACAACGGCGA
* * * * ** *
27229043 ATCTTACTCCCCAAGCGGTGCAGAGGAATAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGA
1 ATCCTACTTCCCTAGCGGTGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTCGCTTCCCCGA
* * * ***
27229108 CATTGCAGTTAAAAAGATTAGAGCTATAATAACGA
66 CATTGCAGTTAAAAAGATTAAAGCCACAACGGCGA
* * * * * * * * *
27229143 ATCTTACTTCCCAAACGGTGCAGTGGAACAGATTAAAGCCACAACAGTGGATCTTGCTTCCCTGA
1 ATCCTACTTCCCTAGCGGTGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTCGCTTCCCCGA
*
27229208 CATTGCAGTTAAAAAGATTGAAA-CCACAATGGCGA
66 CATTGCAGTTAAAAAGATT-AAAGCCACAACGGCGA
*
27229243 ATCTTACTT
1 ATCCTACTT
27229252 TCCAAAAGTT
Statistics
Matches: 360, Mismatches: 47, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
99 85 0.24
100 273 0.76
101 2 0.01
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.24
Consensus pattern (100 bp):
ATCCTACTTCCCTAGCGGTGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTCGCTTCCCCGA
CATTGCAGTTAAAAAGATTAAAGCCACAACGGCGA
Found at i:27229145 original size:50 final size:50
Alignment explanation
Indices: 27228773--27229236 Score: 200
Period size: 50 Copynumber: 9.3 Consensus size: 50
27228763 GCAGTAGAGC
* * * * *
27228773 AGATTAAAGCCACATCGGA-GAATCTCGCTTCCCCGACATTACAGTTAAAA
1 AGATTAAAGCCACAAC-AACGAATCTTGCTTCCCAGACATTGCAGTTAAAA
* ** * * * * * * ** **
27228823 AGATTAAAGCCAC-GCGGCGAATCCTACTTCTCTGGCAGTGCAGTGGAGC
1 AGATTAAAGCCACAACAACGAATCTTGCTTCCCAGACATTGCAGTTAAAA
* ** * *
27228872 AGATTAAAGCCACATCAGTGAATCTCGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACAACGAATCTTGCTTCCCAGACATTGCAGTTAAAA
** * * * * *** ** **
27228922 AGATTAAAGCCACAACGGCAAATCCTACTTCCCTTG-TGGTGCAGTGGAGC
1 AGATTAAAGCCACAACAACGAATCTTGCTTCCC-AGACATTGCAGTTAAAA
* *** * *
27228972 AGATTAAAGCCACATCGGTGAATCTCGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACAACGAATCTTGCTTCCCAGACATTGCAGTTAAAA
* * * * * ** *** *
27229022 AGATTAAAGCTACAGCAATGAATCTTACTCCCCA-AGCGGTGCAGAGGAAT
1 AGATTAAAGCCACAACAACGAATCTTGCTTCCCAGA-CATTGCAGTTAAAA
* *** *
27229072 AGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACAACGAATCTTGCTTCCCAGACATTGCAGTTAAAA
* * * * * * ** ** *
27229122 AGATTAGAGCTATAATAACGAATCTTACTTCCCAAACGGTGCAGTGGAAC
1 AGATTAAAGCCACAACAACGAATCTTGCTTCCCAGACATTGCAGTTAAAA
** * *
27229172 AGATTAAAGCCACAACAGTGGATCTTGCTTCCCTGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACAACGAATCTTGCTTCCCAGACATTGCAGTTAAAA
27229222 AGATTGAAA-CCACAA
1 AGATT-AAAGCCACAA
27229237 TGGCGAATCT
Statistics
Matches: 292, Mismatches: 115, Indels: 14
0.69 0.27 0.03
Matches are distributed among these distances:
48 1 0.00
49 35 0.12
50 251 0.86
51 5 0.02
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.23
Consensus pattern (50 bp):
AGATTAAAGCCACAACAACGAATCTTGCTTCCCAGACATTGCAGTTAAAA
Found at i:27232895 original size:21 final size:21
Alignment explanation
Indices: 27232854--27232895 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
27232844 TCCTATTATA
**
27232854 CCTCATTTTCTTTTTTATTTC
1 CCTCATTTTCTTCATTATTTC
27232875 CCTCATTTTCTTCCATT-TTTC
1 CCTCATTTTCTT-CATTATTTC
27232896 TTTTCTTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.10, C:0.29, G:0.00, T:0.62
Consensus pattern (21 bp):
CCTCATTTTCTTCATTATTTC
Found at i:27233114 original size:14 final size:14
Alignment explanation
Indices: 27233095--27233121 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
27233085 AGATAAAATC
27233095 TGATAGAAATATCA
1 TGATAGAAATATCA
27233109 TGATAGAAATATC
1 TGATAGAAATATC
27233122 TGAGTTCTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.07, G:0.15, T:0.30
Consensus pattern (14 bp):
TGATAGAAATATCA
Found at i:27236964 original size:29 final size:28
Alignment explanation
Indices: 27236910--27236964 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 28
27236900 TATTAATAAT
*
27236910 TTATAAAAATTAAATTTAATATATAAAA
1 TTATAAAAATTAAATTTAATAAATAAAA
27236938 TTATACAAAATTAAAATTT-ATAAATAA
1 TTATA-AAAATT-AAATTTAATAAATAA
27236965 TATTTGGTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
28 5 0.21
29 13 0.54
30 6 0.25
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (28 bp):
TTATAAAAATTAAATTTAATAAATAAAA
Found at i:27239804 original size:16 final size:16
Alignment explanation
Indices: 27239783--27239813 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
27239773 CTATGCATGC
*
27239783 AAAATATAAAAGACAA
1 AAAATACAAAAGACAA
27239799 AAAATACAAAAGACA
1 AAAATACAAAAGACA
27239814 TAATAGTGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.74, C:0.10, G:0.06, T:0.10
Consensus pattern (16 bp):
AAAATACAAAAGACAA
Found at i:27254692 original size:21 final size:21
Alignment explanation
Indices: 27254668--27254724 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
27254658 CCGTTCAGCT
*
27254668 CTTATGAGCTTCTGTTCAACC
1 CTTATGAGCTTCTGTTCAACA
* * * *
27254689 CTTATGGGTTTCTGTTTAGCA
1 CTTATGAGCTTCTGTTCAACA
*
27254710 CTTATGTGCTTCTGT
1 CTTATGAGCTTCTGT
27254725 GCAGCCTTTA
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.14, C:0.21, G:0.19, T:0.46
Consensus pattern (21 bp):
CTTATGAGCTTCTGTTCAACA
Found at i:27257194 original size:25 final size:25
Alignment explanation
Indices: 27257166--27257219 Score: 99
Period size: 25 Copynumber: 2.2 Consensus size: 25
27257156 ACATGAGCCA
*
27257166 TGAATCAGAATGCTCACACGAGTTG
1 TGAATCAAAATGCTCACACGAGTTG
27257191 TGAATCAAAATGCTCACACGAGTTG
1 TGAATCAAAATGCTCACACGAGTTG
27257216 TGAA
1 TGAA
27257220 AATGGGCCTG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (25 bp):
TGAATCAAAATGCTCACACGAGTTG
Found at i:27259746 original size:124 final size:124
Alignment explanation
Indices: 27259503--27259872 Score: 623
Period size: 125 Copynumber: 3.0 Consensus size: 124
27259493 TTTTAAGTCC
*** * * *
27259503 TGGAAGAAATAATTTCGCGTTGACGTTTGTGATCAAATAGTATAAAATCGCTTCTAGTAGGATGC
1 TGGAAGAAATAATTT-TTTTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGC
*
27259568 TATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCA
65 TATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGAAGCGCTTTTGCTACAGTAGGTCA
27259628 TGGAAGAAATAATTTTTTTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCT
1 TGGAAGAAATAATTTTTTTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCT
*
27259693 ATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGAAGCGCTTTTGCTGCAGTAGGTCA
66 ATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGAAGCGCTTTTGCTACAGTAGGTCA
*
27259752 TGGAAGAAATAATTTTTTTTTGACGTTTCTGAGTAAATAGTATAAAATCGCTTCTAGCAGGATGC
1 TGGAAGAAATAA-TTTTTTTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGC
* *
27259817 TATTTAAGAAGAATTTGTGAAATCGCGCCCTCGTGGATGCGCTTTTGCTACAGTAG
65 TATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGAAGCGCTTTTGCTACAGTAG
27259873 CATTTTTGGA
Statistics
Matches: 232, Mismatches: 12, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
124 113 0.49
125 119 0.51
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (124 bp):
TGGAAGAAATAATTTTTTTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCT
ATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGAAGCGCTTTTGCTACAGTAGGTCA
Found at i:27262694 original size:25 final size:25
Alignment explanation
Indices: 27262666--27262773 Score: 189
Period size: 25 Copynumber: 4.3 Consensus size: 25
27262656 TCAAAATAAC
* * *
27262666 TCAAAAAAATTTCTATTTTATTACT
1 TCAAATAAACTTCTATTTTATTACA
27262691 TCAAATAAACTTCTATTTTATTACA
1 TCAAATAAACTTCTATTTTATTACA
27262716 TCAAATAAACTTCTATTTTATTACA
1 TCAAATAAACTTCTATTTTATTACA
27262741 TCAAATAAACTTCTATTTTATTACA
1 TCAAATAAACTTCTATTTTATTACA
27262766 TCAAATAA
1 TCAAATAA
27262774 TATAAAAAAA
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 80 1.00
ACGTcount: A:0.42, C:0.15, G:0.00, T:0.44
Consensus pattern (25 bp):
TCAAATAAACTTCTATTTTATTACA
Found at i:27262805 original size:44 final size:44
Alignment explanation
Indices: 27262741--27262834 Score: 116
Period size: 44 Copynumber: 2.1 Consensus size: 44
27262731 TTTTATTACA
* * **
27262741 TCAAATAAACTTCTATTTTATTACATCAAATAATATAAAAAAAC
1 TCAAAAAAACTTCTAATTTATTACAAAAAATAATATAAAAAAAC
* * * *
27262785 TCAAAAAAATTTCTAATTTATTACAAAAAATAATATCAAAATAT
1 TCAAAAAAACTTCTAATTTATTACAAAAAATAATATAAAAAAAC
27262829 TCAAAA
1 TCAAAA
27262835 TATTTGTACA
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.33
Consensus pattern (44 bp):
TCAAAAAAACTTCTAATTTATTACAAAAAATAATATAAAAAAAC
Found at i:27265007 original size:11 final size:11
Alignment explanation
Indices: 27264991--27265033 Score: 59
Period size: 11 Copynumber: 3.9 Consensus size: 11
27264981 ATTTTTACAG
27264991 TTTAAAAAAAA
1 TTTAAAAAAAA
*
27265002 TTTAAAAAAAT
1 TTTAAAAAAAA
**
27265013 TTTAAAAATTA
1 TTTAAAAAAAA
27265024 TTTAAAAAAA
1 TTTAAAAAAA
27265034 GGGAGTTAAG
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (11 bp):
TTTAAAAAAAA
Found at i:27265018 original size:22 final size:22
Alignment explanation
Indices: 27264991--27265033 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
27264981 ATTTTTACAG
27264991 TTTAAAAAAAATTTAAAAAAAT
1 TTTAAAAAAAATTTAAAAAAAT
**
27265013 TTTAAAAATTATTTAAAAAAA
1 TTTAAAAAAAATTTAAAAAAA
27265034 GGGAGTTAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (22 bp):
TTTAAAAAAAATTTAAAAAAAT
Found at i:27267784 original size:11 final size:11
Alignment explanation
Indices: 27267768--27267802 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
27267758 CATCTCAGAA
27267768 AGAAATTTCAT
1 AGAAATTTCAT
27267779 AGAAATTTCAT
1 AGAAATTTCAT
* *
27267790 AAAAAATTCAT
1 AGAAATTTCAT
27267801 AG
1 AG
27267803 CACAATTCAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.51, C:0.09, G:0.09, T:0.31
Consensus pattern (11 bp):
AGAAATTTCAT
Found at i:27274882 original size:35 final size:35
Alignment explanation
Indices: 27274796--27274954 Score: 178
Period size: 35 Copynumber: 4.5 Consensus size: 35
27274786 TACTCTCTGT
* *
27274796 TTGGTGTGTTTCAGTTGGACTAGCTCTTATGAGTA
1 TTGGTGTGTTTCGGTTGGACTAGCTCTTATGAGCA
** *
27274831 TTGGT-TGTTTTAGTTGGACTAGCTCTTATCAGCA
1 TTGGTGTGTTTCGGTTGGACTAGCTCTTATGAGCA
*
27274865 TTGGTGTGTTTCGGTTGGACTAGCTCTTATGGGCA
1 TTGGTGTGTTTCGGTTGGACTAGCTCTTATGAGCA
* * * * *
27274900 TTGGTGTGATTT-GGATGGATTGGCTCATGTGAGCA
1 TTGGTGTG-TTTCGGTTGGACTAGCTCTTATGAGCA
*
27274935 TCTGGTGTGTTTTGGTTGGA
1 T-TGGTGTGTTTCGGTTGGA
27274955 TTGACGATGT
Statistics
Matches: 106, Mismatches: 14, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
34 31 0.29
35 59 0.56
36 16 0.15
ACGTcount: A:0.14, C:0.11, G:0.32, T:0.42
Consensus pattern (35 bp):
TTGGTGTGTTTCGGTTGGACTAGCTCTTATGAGCA
Found at i:27281127 original size:43 final size:43
Alignment explanation
Indices: 27280972--27281128 Score: 115
Period size: 43 Copynumber: 3.7 Consensus size: 43
27280962 TGTGATTATG
* * * *
27280972 TGTAAGACCACGTTTGGGATGTTGGTAACGAT-TTGTGATTTACA
1 TGTAAGACCACGTCTGGGATGTTGGCATCGGTATT-TGATTT-CA
* ** ** ** * *
27281016 TGTAAGACCATGTCTGGGACATCAGCATC-GTATACGAGTTCG
1 TGTAAGACCACGTCTGGGATGTTGGCATCGGTATTTGATTTCA
* *
27281058 TGTAAGACC-CTGTCGGGGACAG-TGGCATCGGTATTTGATTTCA
1 TGTAAGACCAC-GTCTGGGA-TGTTGGCATCGGTATTTGATTTCA
27281101 TGTAAGACCACGTCTGGGATGTTGGCAT
1 TGTAAGACCACGTCTGGGATGTTGGCAT
27281129 TGTATGAGTT
Statistics
Matches: 82, Mismatches: 25, Indels: 13
0.68 0.21 0.11
Matches are distributed among these distances:
42 23 0.28
43 36 0.44
44 23 0.28
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.31
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGATGTTGGCATCGGTATTTGATTTCA
Found at i:27288806 original size:43 final size:43
Alignment explanation
Indices: 27288650--27288807 Score: 135
Period size: 43 Copynumber: 3.7 Consensus size: 43
27288640 AAGTGATTAT
27288650 GTGTAAGACCACGTCTGGGACGTTGGCATCGAT-TTGTGATTTAC
1 GTGTAAGACCACGTCTGGGACGTTGGCATCGATATT-TGATTT-C
* * * * * ** *
27288694 GTGTAAGACCATGTCTTGGACATCGGTATCG-TATACGAGTTC
1 GTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTTC
* * *
27288736 GTGTAAGACC-CTATCGGGGATAG-TGGCATCGATATTTGATTTC
1 GTGTAAGACCAC-GTCTGGGA-CGTTGGCATCGATATTTGATTTC
* *
27288779 ATGTAAGACCACGTCTAGGACGTTGGCAT
1 GTGTAAGACCACGTCTGGGACGTTGGCAT
27288808 TGTATGAGCT
Statistics
Matches: 84, Mismatches: 24, Indels: 13
0.69 0.20 0.11
Matches are distributed among these distances:
42 23 0.27
43 33 0.39
44 28 0.33
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.30
Consensus pattern (43 bp):
GTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTTC
Found at i:27290783 original size:24 final size:24
Alignment explanation
Indices: 27290737--27290783 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
27290727 TGACCTAAAA
* *
27290737 TCAAACCATTTCATGCATAATTTC
1 TCAAACCACTTCAAGCATAATTTC
27290761 TCAAACCACTT-AAGCATACATTT
1 TCAAACCACTTCAAGCATA-ATTT
27290784 AATGGGTTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 6 0.30
24 14 0.70
ACGTcount: A:0.36, C:0.26, G:0.04, T:0.34
Consensus pattern (24 bp):
TCAAACCACTTCAAGCATAATTTC
Found at i:27291754 original size:16 final size:15
Alignment explanation
Indices: 27291730--27291759 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
27291720 CTTTAATTAC
27291730 TTTTAATTTTATATG
1 TTTTAATTTTATATG
27291745 TTTTATATTTTATAT
1 TTTTA-ATTTTATAT
27291760 TTTATTATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (15 bp):
TTTTAATTTTATATG
Found at i:27301283 original size:15 final size:17
Alignment explanation
Indices: 27301252--27301284 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
27301242 CTTTATATTT
27301252 AATACATAAATTTTATA
1 AATACATAAATTTTATA
27301269 AATA-ATAAA-TTTATA
1 AATACATAAATTTTATA
27301284 A
1 A
27301285 GTTTATTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 5 0.31
17 4 0.25
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (17 bp):
AATACATAAATTTTATA
Found at i:27311425 original size:4 final size:4
Alignment explanation
Indices: 27311416--27311444 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
27311406 TAATTCACGT
27311416 TAAA TAAA TAAA TAAA TAAA TAAA TAAA T
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA T
27311445 TATATTGCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (4 bp):
TAAA
Found at i:27317126 original size:19 final size:17
Alignment explanation
Indices: 27317087--27317124 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
27317077 TTTCTTTTTT
*
27317087 TAAA-AAAATATATGTA
1 TAAATAAAATATATATA
27317103 TAAATAAAATATATAATA
1 TAAATAAAATATAT-ATA
27317121 TAAA
1 TAAA
27317125 ATCAATAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 4 0.21
17 9 0.47
18 6 0.32
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.32
Consensus pattern (17 bp):
TAAATAAAATATATATA
Found at i:27317288 original size:18 final size:18
Alignment explanation
Indices: 27317265--27317301 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
27317255 AAAAAAGTAG
27317265 ATAAATATATAA-ACTAAT
1 ATAAATA-ATAATACTAAT
27317283 ATAAATAATAATACTAAT
1 ATAAATAATAATACTAAT
27317301 A
1 A
27317302 ATAATGATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.32
Consensus pattern (18 bp):
ATAAATAATAATACTAAT
Found at i:27318870 original size:44 final size:44
Alignment explanation
Indices: 27318795--27319300 Score: 223
Period size: 44 Copynumber: 11.6 Consensus size: 44
27318785 CTTGATGCGA
* *
27318795 TCTGCTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAAT
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTATT-CTTTAAT
* * *
27318840 TC-GCTCCACTACAACTTCAGGGAGATAAGAT-TATCGACTTCAA-
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTAT--TCTTTAAT
* * * * *
27318883 TCTGCTCCACTGCAACCTCAGGGAGATAAGATTTGCTTC-TTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCT-ATTCTTTAAT
* ** * * * * *
27318927 TCTGCCCCACTGTGACTTCAGGGGGATAA-AACT-TGTTTTCTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTAT-TCTT-TAAT
* * *
27318971 TCTGCTCCACTGCAACTTCAGGGAGATAAGACCTGATGC---GA-
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCT-ATTCTTTAAT
** * * **
27319012 TCCACTCTACTGCAACTTTAAAGAGATAAGATCTATTACTTTAA-
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTATT-CTTTAAT
* * * * *
27319056 TCCGCTCCACTACAACTTCAGGGAGATAGGAT-TATCGGCTTCAA-
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTAT--TCTTTAAT
* * * * **
27319100 TCTGCTCTACTGTAACTTCAGGGAGATAAGATTTGCTTCTTCGA-
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCT-ATTCTTTAAT
* *
27319144 TCTGC-CCTACTTCAACTTCAGTGG-GATAAGA-CT-TGT-TTTATCAG
1 TCTGCTCC-ACTGCAACTTCAG-GGAGATAAGATCTAT-TCTTTA--AT
* * * * *
27319188 TCTGCTCCATTGCAACTTTAGGGAGATAAGACCTGATGC---GA-
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCT-ATTCTTTAAT
** * *
27319229 TCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAA-
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTATT-CTTTAAT
* *
27319273 TCCGCTCCACTACAACTTCAGGGAGATA
1 TCTGCTCCACTGCAACTTCAGGGAGATA
27319301 GGATTATCGG
Statistics
Matches: 348, Mismatches: 77, Indels: 73
0.70 0.15 0.15
Matches are distributed among these distances:
40 4 0.01
41 60 0.17
42 4 0.01
43 18 0.05
44 245 0.70
45 13 0.04
46 2 0.01
47 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (44 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTATTCTTTAAT
Found at i:27319162 original size:173 final size:173
Alignment explanation
Indices: 27318861--27319175 Score: 381
Period size: 173 Copynumber: 1.8 Consensus size: 173
27318851 CAACTTCAGG
* * **
27318861 GAGATAAGATTATCGACTTCAATCTGCTCCACTGCAACCTCAGGGAGATAAGATTTGCTTCTTCA
1 GAGATAAGATTATCGACTTCAATCCGCTCCACTACAACCTCAGGGAGATAAGATTTGCGGCTTCA
* * *
27318926 GTCTGCCCCACTGTGACTTCAGGGGGATAAAACTTGTTTTCTCAGTCTGCTCCACTGCAACTTCA
66 ATCTGCCCCACTGTAACTTCAGGGAGATAAAACTTGTTTTCTCAGTCTGCTCCACTGCAACTTCA
27318991 G-GGAGATAAGACCTGATGCGATCCACTCTACTGCAACTTTAAA
131 GTGG-GATAAGACCTGATGCGATCCACTCTACTGCAACTTTAAA
* * * *
27319034 GAGATAAGATCTAT-TACTTTAATCCGCTCCACTACAACTTCAGGGAGATAGGATTAT-CGGCTT
1 GAGATAAGAT-TATCGACTTCAATCCGCTCCACTACAACCTCAGGGAGATAAGATT-TGCGGCTT
* * * * * *
27319097 CAATCTGCTCTACTGTAACTTCAGGGAGATAAGATTTG-CTTCTTC-GATCTGC-CCTACTTCAA
64 CAATCTGCCCCACTGTAACTTCAGGGAGATAAAACTTGTTTTC-TCAG-TCTGCTCC-ACTGCAA
27319159 CTTCAGTGGGATAAGAC
126 CTTCAGTGGGATAAGAC
27319176 TTGTTTTATC
Statistics
Matches: 119, Mismatches: 17, Indels: 12
0.80 0.11 0.08
Matches are distributed among these distances:
172 6 0.05
173 107 0.90
174 6 0.05
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (173 bp):
GAGATAAGATTATCGACTTCAATCCGCTCCACTACAACCTCAGGGAGATAAGATTTGCGGCTTCA
ATCTGCCCCACTGTAACTTCAGGGAGATAAAACTTGTTTTCTCAGTCTGCTCCACTGCAACTTCA
GTGGGATAAGACCTGATGCGATCCACTCTACTGCAACTTTAAA
Found at i:27319164 original size:217 final size:217
Alignment explanation
Indices: 27318781--27319322 Score: 890
Period size: 217 Copynumber: 2.5 Consensus size: 217
27318771 TCTAGTCGGC
* ** *
27318781 AAGACTTGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATTCGCTC
1 AAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATCCGCTC
* *
27318846 CACTACAACTTCAGGGAGATAAGATTATCGACTTCAATCTGCTCCACTGCAACCTCAGGGAGATA
66 CACTACAACTTCAGGGAGATAGGATTATCGGCTTCAATCTGCTCCACTGCAACCTCAGGGAGATA
* *
27318911 AGATTTGCTTCTTCAGTCTGCCCCACTGTGACTTCAGGGGGATAAAACTTGTTTTCTCAGTCTGC
131 AGATTTGCTTCTTCAGTCTGCCCCACTGTAACTTCAGGGGGATAAAACTTGTTTTATCAGTCTGC
27318976 TCCACTGCAACTTCAGGGAGAT
196 TCCACTGCAACTTCAGGGAGAT
* *
27318998 AAGACCTGATGCGATCCACTCTACTGCAACTTTAAAGAGATAAGATCTATTACTTTAATCCGCTC
1 AAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATCCGCTC
* * *
27319063 CACTACAACTTCAGGGAGATAGGATTATCGGCTTCAATCTGCTCTACTGTAACTTCAGGGAGATA
66 CACTACAACTTCAGGGAGATAGGATTATCGGCTTCAATCTGCTCCACTGCAACCTCAGGGAGATA
* * *
27319128 AGATTTGCTTCTTC-GATCTGCCCTACT-TCAACTTCAGTGGGATAAGACTTGTTTTATCAGTCT
131 AGATTTGCTTCTTCAG-TCTGCCCCACTGT-AACTTCAGGGGGATAAAACTTGTTTTATCAGTCT
* *
27319191 GCTCCATTGCAACTTTAGGGAGAT
194 GCTCCACTGCAACTTCAGGGAGAT
27319215 AAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATCCGCTC
1 AAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATCCGCTC
27319280 CACTACAACTTCAGGGAGATAGGATTATCGGCTTCAATCTGCT
66 CACTACAACTTCAGGGAGATAGGATTATCGGCTTCAATCTGCT
27319323 TCCTTACACT
Statistics
Matches: 303, Mismatches: 20, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
216 2 0.01
217 301 0.99
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (217 bp):
AAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATCCGCTC
CACTACAACTTCAGGGAGATAGGATTATCGGCTTCAATCTGCTCCACTGCAACCTCAGGGAGATA
AGATTTGCTTCTTCAGTCTGCCCCACTGTAACTTCAGGGGGATAAAACTTGTTTTATCAGTCTGC
TCCACTGCAACTTCAGGGAGAT
Found at i:27320840 original size:14 final size:14
Alignment explanation
Indices: 27320821--27320871 Score: 59
Period size: 15 Copynumber: 3.6 Consensus size: 14
27320811 CCTTAGCCTC
27320821 TTCATTTTTACTTT
1 TTCATTTTTACTTT
*
27320835 TTCATTTTTTCATTT
1 TTCATTTTTAC-TTT
*
27320850 TTCATTTTCA-TTT
1 TTCATTTTTACTTT
*
27320863 TTTATTTTT
1 TTCATTTTT
27320872 TTGACTCAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
13 10 0.32
14 10 0.32
15 11 0.35
ACGTcount: A:0.14, C:0.12, G:0.00, T:0.75
Consensus pattern (14 bp):
TTCATTTTTACTTT
Found at i:27320842 original size:7 final size:7
Alignment explanation
Indices: 27320821--27320871 Score: 61
Period size: 7 Copynumber: 7.3 Consensus size: 7
27320811 CCTTAGCCTC
27320821 TTCATTT
1 TTCATTT
27320828 TT-ACTTT
1 TTCA-TTT
27320835 TTCATTTT
1 TTCA-TTT
27320843 TTCATTT
1 TTCATTT
27320850 TTCA-TT
1 TTCATTT
27320856 TTCATTT
1 TTCATTT
*
27320863 TTTATTT
1 TTCATTT
27320870 TT
1 TT
27320872 TTGACTCAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
6 7 0.18
7 24 0.62
8 8 0.21
ACGTcount: A:0.14, C:0.12, G:0.00, T:0.75
Consensus pattern (7 bp):
TTCATTT
Found at i:27320857 original size:13 final size:13
Alignment explanation
Indices: 27320821--27320870 Score: 55
Period size: 13 Copynumber: 3.6 Consensus size: 13
27320811 CCTTAGCCTC
*
27320821 TTCATTTTTACTTT
1 TTCATTTTCA-TTT
27320835 TTCATTTTTTCATTT
1 TTCA--TTTTCATTT
27320850 TTCATTTTCATTT
1 TTCATTTTCATTT
*
27320863 TTTATTTT
1 TTCATTTT
27320871 TTTGACTCAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
13 16 0.50
14 4 0.12
15 7 0.22
16 5 0.16
ACGTcount: A:0.14, C:0.12, G:0.00, T:0.74
Consensus pattern (13 bp):
TTCATTTTCATTT
Found at i:27320865 original size:21 final size:22
Alignment explanation
Indices: 27320821--27320871 Score: 79
Period size: 21 Copynumber: 2.4 Consensus size: 22
27320811 CCTTAGCCTC
*
27320821 TTCATTTTTACTTTTTCATTTT
1 TTCATTTTTACATTTTCATTTT
27320843 TTCATTTTT-CATTTTCATTTT
1 TTCATTTTTACATTTTCATTTT
27320864 TT-ATTTTT
1 TTCATTTTT
27320872 TTGACTCAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
20 6 0.21
21 13 0.46
22 9 0.32
ACGTcount: A:0.14, C:0.12, G:0.00, T:0.75
Consensus pattern (22 bp):
TTCATTTTTACATTTTCATTTT
Found at i:27321807 original size:12 final size:12
Alignment explanation
Indices: 27321792--27321833 Score: 75
Period size: 12 Copynumber: 3.4 Consensus size: 12
27321782 TTTCTCTCAT
27321792 TTTTTATTTTGA
1 TTTTTATTTTGA
27321804 TTTTTGATTTTGA
1 TTTTT-ATTTTGA
27321817 TTTTTATTTTGA
1 TTTTTATTTTGA
27321829 TTTTT
1 TTTTT
27321834 TTTGAAAGGA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
12 17 0.59
13 12 0.41
ACGTcount: A:0.14, C:0.00, G:0.10, T:0.76
Consensus pattern (12 bp):
TTTTTATTTTGA
Found at i:27321808 original size:7 final size:7
Alignment explanation
Indices: 27321798--27321833 Score: 51
Period size: 7 Copynumber: 5.6 Consensus size: 7
27321788 TCATTTTTTA
27321798 TTTTGAT
1 TTTTGAT
27321805 TTTTGA-
1 TTTTGAT
27321811 TTTTGAT
1 TTTTGAT
27321818 TTTT-A-
1 TTTTGAT
27321823 TTTTGAT
1 TTTTGAT
27321830 TTTT
1 TTTT
27321834 TTTGAAAGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
5 4 0.15
6 8 0.31
7 14 0.54
ACGTcount: A:0.14, C:0.00, G:0.11, T:0.75
Consensus pattern (7 bp):
TTTTGAT
Found at i:27321808 original size:13 final size:13
Alignment explanation
Indices: 27321790--27321834 Score: 74
Period size: 13 Copynumber: 3.5 Consensus size: 13
27321780 CTTTTCTCTC
27321790 ATTTTTTATTTTG
1 ATTTTTTATTTTG
*
27321803 ATTTTTGATTTTG
1 ATTTTTTATTTTG
27321816 A-TTTTTATTTTG
1 ATTTTTTATTTTG
27321828 ATTTTTT
1 ATTTTTT
27321835 TTGAAAGGAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
12 11 0.38
13 18 0.62
ACGTcount: A:0.16, C:0.00, G:0.09, T:0.76
Consensus pattern (13 bp):
ATTTTTTATTTTG
Found at i:27326688 original size:18 final size:16
Alignment explanation
Indices: 27326654--27326692 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 16
27326644 TTTCTTTTTT
*
27326654 TAAAAAAATGTATGTA
1 TAAAAAAATATATGTA
27326670 TAAATAAAATATATAGTA
1 TAAA-AAAATATAT-GTA
27326688 TAAAA
1 TAAAA
27326693 TCAATAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 4 0.20
17 9 0.45
18 7 0.35
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (16 bp):
TAAAAAAATATATGTA
Found at i:27326853 original size:18 final size:18
Alignment explanation
Indices: 27326830--27326866 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
27326820 AAAAATGTAG
27326830 ATAAATATATAA-ACTAAT
1 ATAAATA-ATAATACTAAT
27326848 ATAAATAATAATACTAAT
1 ATAAATAATAATACTAAT
27326866 A
1 A
27326867 ATAATGATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.32
Consensus pattern (18 bp):
ATAAATAATAATACTAAT
Found at i:27328546 original size:27 final size:27
Alignment explanation
Indices: 27328430--27328553 Score: 135
Period size: 27 Copynumber: 4.7 Consensus size: 27
27328420 AACCCTGATC
* *
27328430 TACAGCTTGTGCGAGCAACCTAAATAT
1 TACAGCTTGTGTGAGCAATCTAAATAT
* *
27328457 CACAAC-T-TGTGAGCAATCTAAATAT
1 TACAGCTTGTGTGAGCAATCTAAATAT
* * *
27328482 TACAGCTTGTCTGAGAAATCTAAACAT
1 TACAGCTTGTGTGAGCAATCTAAATAT
* *
27328509 TATAGCTTGTGTGAGCAATCTACATAT
1 TACAGCTTGTGTGAGCAATCTAAATAT
* *
27328536 TACAACTTGTGTAAGCAA
1 TACAGCTTGTGTGAGCAA
27328554 ACCTAAATGA
Statistics
Matches: 78, Mismatches: 17, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
25 20 0.26
26 2 0.03
27 56 0.72
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30
Consensus pattern (27 bp):
TACAGCTTGTGTGAGCAATCTAAATAT
Found at i:27329516 original size:25 final size:25
Alignment explanation
Indices: 27329488--27329536 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
27329478 TAACAAATCA
* **
27329488 AGCAGAATAGAATTAAACAGAGCAG
1 AGCAGAACAGAACAAAACAGAGCAG
27329513 AGCAGAACAGAACAAAACAGAGCA
1 AGCAGAACAGAACAAAACAGAGCA
27329537 TATTAGAACA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.55, C:0.16, G:0.22, T:0.06
Consensus pattern (25 bp):
AGCAGAACAGAACAAAACAGAGCAG
Found at i:27329544 original size:25 final size:25
Alignment explanation
Indices: 27329502--27329551 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
27329492 GAATAGAATT
*
27329502 AAACAGAGCAGAGCAGAACAGAACA
1 AAACAGAGCAGAGCAGAACAAAACA
* **
27329527 AAACAGAGCATATTAGAACAAAACA
1 AAACAGAGCAGAGCAGAACAAAACA
27329552 GAGTAAAATA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.58, C:0.18, G:0.18, T:0.06
Consensus pattern (25 bp):
AAACAGAGCAGAGCAGAACAAAACA
Found at i:27329563 original size:20 final size:20
Alignment explanation
Indices: 27329521--27329576 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
27329511 AGAGCAGAAC
* * *
27329521 AGAACAAAACAGAGCATATT
1 AGAACAAAACAGAGTAAAAT
27329541 AGAACAAAACAGAGTAAAAT
1 AGAACAAAACAGAGTAAAAT
* *
27329561 AGAACAGAACATAGTA
1 AGAACAAAACAGAGTA
27329577 GAAGATGTAC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.59, C:0.12, G:0.16, T:0.12
Consensus pattern (20 bp):
AGAACAAAACAGAGTAAAAT
Found at i:27330470 original size:42 final size:42
Alignment explanation
Indices: 27330424--27330520 Score: 110
Period size: 42 Copynumber: 2.3 Consensus size: 42
27330414 TGTAGAACTA
* *
27330424 GCCCGTGTGACTCCATACGATCT-AGCACACACCCGTGT-ACTT
1 GCCCGTGTG-CTCCACACGACCTGA-CACACACCCGTGTCACTT
*
27330466 GCCCGTGTG-TCCCACACGGCCTGACACACACCCGTGTCACTT
1 GCCCGTGTGCT-CCACACGACCTGACACACACCCGTGTCACTT
*
27330508 GCCTGTGTGCTCC
1 GCCCGTGTGCTCC
27330521 TAATTCGTAA
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
40 1 0.02
41 21 0.45
42 24 0.51
43 1 0.02
ACGTcount: A:0.16, C:0.39, G:0.22, T:0.23
Consensus pattern (42 bp):
GCCCGTGTGCTCCACACGACCTGACACACACCCGTGTCACTT
Found at i:27338948 original size:17 final size:16
Alignment explanation
Indices: 27338907--27338956 Score: 82
Period size: 16 Copynumber: 3.1 Consensus size: 16
27338897 GGTTCGCTGC
*
27338907 ATTGGATTAGAGATGT
1 ATTGGATTAGAGGTGT
27338923 ATTGGATTAGAGGTGT
1 ATTGGATTAGAGGTGT
27338939 ATTGGGATTAGAGGTGT
1 ATT-GGATTAGAGGTGT
27338956 A
1 A
27338957 ATAGCTAATC
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
16 18 0.56
17 14 0.44
ACGTcount: A:0.28, C:0.00, G:0.36, T:0.36
Consensus pattern (16 bp):
ATTGGATTAGAGGTGT
Found at i:27339212 original size:16 final size:16
Alignment explanation
Indices: 27339172--27339213 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
27339162 TTAATCATAT
27339172 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATTA
*
27339188 TT-AAATATATTTTTA
1 TTAAAATATATTATTA
27339203 TTAAAATATAT
1 TTAAAATATAT
27339214 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (16 bp):
TTAAAATATATTATTA
Found at i:27339333 original size:18 final size:17
Alignment explanation
Indices: 27339312--27339346 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
27339302 TTATTATTAA
*
27339312 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
27339330 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
27339347 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:27342865 original size:8 final size:7
Alignment explanation
Indices: 27342835--27342879 Score: 63
Period size: 7 Copynumber: 6.1 Consensus size: 7
27342825 CGTAGAAGAG
27342835 GGGAAAT
1 GGGAAAT
27342842 GGGAAAT
1 GGGAAAT
27342849 GGGAAAT
1 GGGAAAT
27342856 GGGAAAAT
1 GGG-AAAT
*
27342864 GGGTTAAT
1 GGG-AAAT
27342872 GGGAAAT
1 GGGAAAT
27342879 G
1 G
27342880 TATTTTAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
7 21 0.62
8 13 0.38
ACGTcount: A:0.40, C:0.00, G:0.42, T:0.18
Consensus pattern (7 bp):
GGGAAAT
Found at i:27343612 original size:32 final size:33
Alignment explanation
Indices: 27343549--27343615 Score: 118
Period size: 33 Copynumber: 2.1 Consensus size: 33
27343539 AACACGTTTA
*
27343549 TTTAGGTTACTCTTCTACTCTGCCTGTAATAGT
1 TTTAGGTTACTCTTCTACACTGCCTGTAATAGT
27343582 TTTAGGTTACTCTTCTACACT-CCTGTAATAGT
1 TTTAGGTTACTCTTCTACACTGCCTGTAATAGT
27343614 TT
1 TT
27343616 CAGCTGAGCT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 13 0.39
33 20 0.61
ACGTcount: A:0.19, C:0.21, G:0.13, T:0.46
Consensus pattern (33 bp):
TTTAGGTTACTCTTCTACACTGCCTGTAATAGT
Found at i:27349512 original size:18 final size:21
Alignment explanation
Indices: 27349491--27349534 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
27349481 TATATTTGTC
27349491 ATTA-AATAAATA-T-TTATT
1 ATTATAATAAATATTGTTATT
*
27349509 ATTATAATAATTATTGTTATT
1 ATTATAATAAATATTGTTATT
27349530 ATTAT
1 ATTAT
27349535 TTAATTGATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 4 0.18
19 7 0.32
20 1 0.05
21 10 0.45
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (21 bp):
ATTATAATAAATATTGTTATT
Found at i:27374507 original size:16 final size:16
Alignment explanation
Indices: 27374486--27374517 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
27374476 AGAGTTAAGC
27374486 CATTATAATCAAATCT
1 CATTATAATCAAATCT
27374502 CATTATAATCAAATCT
1 CATTATAATCAAATCT
27374518 AAAGTAGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.19, G:0.00, T:0.38
Consensus pattern (16 bp):
CATTATAATCAAATCT
Found at i:27374608 original size:52 final size:52
Alignment explanation
Indices: 27374449--27374611 Score: 145
Period size: 52 Copynumber: 3.1 Consensus size: 52
27374439 ATCTAAGCTA
27374449 AAAGAATGCAATCAATCTAACATAAACAGAGTTAAGCCATTATAATCAAATCT
1 AAAG-ATGCAATCAATCTAACATAAACAGAGTTAAGCCATTATAATCAAATCT
* ** * * * * * **
27374502 CATTAT--AATCAAATCTAA-AGTAGAA-ATATATTTAGCAATCATGTTCATAAATCT
1 AAAGATGCAATC-AATCTAACA-TA-AACAGA-GTTAAGCCATTATAATC--AAATCT
27374556 AAAGATGCAATCAATCTAACATAAACAGAGTTAAGCCATTATAATCAAATCT
1 AAAGATGCAATCAATCTAACATAAACAGAGTTAAGCCATTATAATCAAATCT
27374608 AAAG
1 AAAG
27374612 TAGAAATATA
Statistics
Matches: 80, Mismatches: 20, Indels: 21
0.66 0.17 0.17
Matches are distributed among these distances:
50 5 0.06
51 11 0.14
52 25 0.31
53 1 0.01
54 22 0.28
55 11 0.14
56 5 0.06
ACGTcount: A:0.48, C:0.15, G:0.09, T:0.28
Consensus pattern (52 bp):
AAAGATGCAATCAATCTAACATAAACAGAGTTAAGCCATTATAATCAAATCT
Found at i:27376685 original size:50 final size:50
Alignment explanation
Indices: 27376618--27376815 Score: 207
Period size: 50 Copynumber: 3.8 Consensus size: 50
27376608 TTTCTTGTAC
* * **
27376618 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATTGG
* *** * *
27376668 TGCCCATGCCATGTCCCAGACATGGTCTTATGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATTGG
* * * *
27376718 TGCCAACGCCATTTCCCAGACATGGTATTACATGGGACCTCTCATAACCTCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--T---TGG
*
27376774 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
27376816 TTACCCAAAT
Statistics
Matches: 118, Mismatches: 24, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
50 78 0.66
53 1 0.01
56 39 0.33
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATTGG
Found at i:27376749 original size:100 final size:103
Alignment explanation
Indices: 27376618--27376803 Score: 252
Period size: 100 Copynumber: 1.8 Consensus size: 103
27376608 TTTCTTGTAC
* * * ** * *
27376618 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCAT-A-T-TGGTGCCCATGCCAT
1 TGCCAACGCCATATCCCAGACATGGTATTACATGGGACCTCTCATAACTATGATGCCAATGCCAT
27376680 GTCCCAGACATGGTCTTATGGGGGACCTCTCATCTCGG
66 GTCCCAGACATGGTCTTATGGGGGACCTCTCATCTCGG
*
27376718 TGCCAACGCCATTTCCCAGACATGGTATTACATGGGACCTCTCATAACCTCAATGATGCCAATGC
1 TGCCAACGCCATATCCCAGACATGGTATTACATGGGACCTCTCATAA-CT--ATGATGCCAATGC
27376783 CATGTCCCAGACATGGTCTTA
63 CATGTCCCAGACATGGTCTTA
27376804 CATGGGATCT
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
100 39 0.54
101 1 0.01
103 1 0.01
106 31 0.43
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.27
Consensus pattern (103 bp):
TGCCAACGCCATATCCCAGACATGGTATTACATGGGACCTCTCATAACTATGATGCCAATGCCAT
GTCCCAGACATGGTCTTATGGGGGACCTCTCATCTCGG
Found at i:27377761 original size:86 final size:87
Alignment explanation
Indices: 27377657--27377842 Score: 252
Period size: 87 Copynumber: 2.1 Consensus size: 87
27377647 CTAAGTATTT
* * *
27377657 GCGGCGC-TTTCACCACAAACGCCG-TTAAAGACCAGGACCTTTAGCGGCGCTTTTCCCACAAAC
1 GCGGCGCTTTTC-CCACAAACGCCGCTAAAAGACCAGGACCTCTAGCGGCGCTTTTCCAAC-AAC
*
27377720 GCCGCT-AAAGACCAAGACCTTTA
64 GCCGCTAAAAGACCAAGACCTCTA
* * * *
27377743 GCGGCGCTTTTCCCACAAATGCCGCTAAAAGATCATGACCTCTAGCGGCTCTTTTCCAACAACGC
1 GCGGCGCTTTTCCCACAAACGCCGCTAAAAGACCAGGACCTCTAGCGGCGCTTTTCCAACAACGC
*
27377808 CGCTAAAAGACCATGACCTCTA
66 CGCTAAAAGACCAAGACCTCTA
27377830 GCGGCGCTTTTCC
1 GCGGCGCTTTTCC
27377843 ATATATTGCT
Statistics
Matches: 88, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
86 27 0.31
87 61 0.69
ACGTcount: A:0.26, C:0.34, G:0.19, T:0.21
Consensus pattern (87 bp):
GCGGCGCTTTTCCCACAAACGCCGCTAAAAGACCAGGACCTCTAGCGGCGCTTTTCCAACAACGC
CGCTAAAAGACCAAGACCTCTA
Found at i:27377843 original size:43 final size:44
Alignment explanation
Indices: 27377657--27377842 Score: 254
Period size: 43 Copynumber: 4.3 Consensus size: 44
27377647 CTAAGTATTT
* * *
27377657 GCGGCGC-TTTCACCACAAACGCCG-TTAAAGACCAGGACCTTTA
1 GCGGCGCTTTTC-CCACAAACGCCGCTAAAAGACCATGACCTCTA
* *
27377700 GCGGCGCTTTTCCCACAAACGCCGCT-AAAGACCAAGACCTTTA
1 GCGGCGCTTTTCCCACAAACGCCGCTAAAAGACCATGACCTCTA
* *
27377743 GCGGCGCTTTTCCCACAAATGCCGCTAAAAGATCATGACCTCTA
1 GCGGCGCTTTTCCCACAAACGCCGCTAAAAGACCATGACCTCTA
* *
27377787 GCGGCTCTTTTCCAAC-AACGCCGCTAAAAGACCATGACCTCTA
1 GCGGCGCTTTTCCCACAAACGCCGCTAAAAGACCATGACCTCTA
27377830 GCGGCGCTTTTCC
1 GCGGCGCTTTTCC
27377843 ATATATTGCT
Statistics
Matches: 130, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
43 97 0.75
44 33 0.25
ACGTcount: A:0.26, C:0.34, G:0.19, T:0.21
Consensus pattern (44 bp):
GCGGCGCTTTTCCCACAAACGCCGCTAAAAGACCATGACCTCTA
Found at i:27381493 original size:70 final size:70
Alignment explanation
Indices: 27381376--27381516 Score: 264
Period size: 70 Copynumber: 2.0 Consensus size: 70
27381366 TTTATAAAAT
*
27381376 AAAACCTATTTTTGCAAATCCAACCATCCAATATACAATTAAGTCATTAATAACAGCAATTAAAC
1 AAAACCTATTTTTGCAAATCCAACCATCCAATATACAATTAAGTCATTAATAACAACAATTAAAC
27381441 CTTTA
66 CTTTA
*
27381446 AAAACCTATTTTTGCAAATCCAACCATCCAATATACAATTAATTCATTAATAACAACAATTAAAC
1 AAAACCTATTTTTGCAAATCCAACCATCCAATATACAATTAAGTCATTAATAACAACAATTAAAC
27381511 CTTTA
66 CTTTA
27381516 A
1 A
27381517 TTTAACACAT
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
70 69 1.00
ACGTcount: A:0.45, C:0.21, G:0.03, T:0.30
Consensus pattern (70 bp):
AAAACCTATTTTTGCAAATCCAACCATCCAATATACAATTAAGTCATTAATAACAACAATTAAAC
CTTTA
Found at i:27382358 original size:2 final size:2
Alignment explanation
Indices: 27382351--27382405 Score: 110
Period size: 2 Copynumber: 27.5 Consensus size: 2
27382341 GAAAACAAGC
27382351 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
27382393 GA GA GA GA GA GA G
1 GA GA GA GA GA GA G
27382406 CTCTCAATTC
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 53 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
GA
Found at i:27395490 original size:30 final size:29
Alignment explanation
Indices: 27395430--27395490 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 29
27395420 GCTTTTTGAA
* *
27395430 AATATTTACAAAAGAGGCATCTAATGTTT
1 AATATTTACAAAAGAGGCACCAAATGTTT
*
27395459 AATATTTACAAAA-AGAGCAACCAAATTTTT
1 AATATTTACAAAAGAG-GC-ACCAAATGTTT
27395489 AA
1 AA
27395491 AAATAATTCA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 2 0.07
29 15 0.56
30 10 0.37
ACGTcount: A:0.48, C:0.11, G:0.10, T:0.31
Consensus pattern (29 bp):
AATATTTACAAAAGAGGCACCAAATGTTT
Found at i:27402202 original size:3 final size:3
Alignment explanation
Indices: 27402194--27402220 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
27402184 TATGCTCCAA
27402194 AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG
27402221 TAAAAAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:27407450 original size:28 final size:28
Alignment explanation
Indices: 27407410--27407523 Score: 126
Period size: 28 Copynumber: 4.1 Consensus size: 28
27407400 AATAGTATAG
* *
27407410 TGTGGGCCCTAGCTCAATACAGTAA-CAA
1 TGTGGGCCTTAGCTCAATATAG-AATCAA
* * *
27407438 TGTGGGCCTTAGCCCAATATAGAATTAG
1 TGTGGGCCTTAGCTCAATATAGAATCAA
*
27407466 TGTGGGCCTTAG-TCCAATATAGAATCAG
1 TGTGGGCCTTAGCT-CAATATAGAATCAA
27407494 TGTGGGCCTTAGCTCAATATAGTAA-CAA
1 TGTGGGCCTTAGCTCAATATAG-AATCAA
27407522 TG
1 TG
27407524 CAGTGCAATA
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 69 0.93
29 3 0.04
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (28 bp):
TGTGGGCCTTAGCTCAATATAGAATCAA
Found at i:27407498 original size:56 final size:56
Alignment explanation
Indices: 27407407--27407515 Score: 150
Period size: 56 Copynumber: 1.9 Consensus size: 56
27407397 AGTAATAGTA
27407407 TAGTGTGGGCCCTAGCTCAATACAGTAACAATGTGGGCCTTAGCCCAATATAGAAT
1 TAGTGTGGGCCCTAGCTCAATACAGTAACAATGTGGGCCTTAGCCCAATATAGAAT
* * * *
27407463 TAGTGTGGGCCTTAG-TCCAATATAG-AATCAGTGTGGGCCTTAGCTCAATATAG
1 TAGTGTGGGCCCTAGCT-CAATACAGTAA-CAATGTGGGCCTTAGCCCAATATAG
27407516 TAACAATGCA
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
55 3 0.06
56 44 0.94
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (56 bp):
TAGTGTGGGCCCTAGCTCAATACAGTAACAATGTGGGCCTTAGCCCAATATAGAAT
Found at i:27407654 original size:26 final size:26
Alignment explanation
Indices: 27407625--27407679 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
27407615 AACACACCAA
* * *
27407625 TATCGCAGCAAAGCTGCCAGTAATAG
1 TATCACAGCAAAACTGCCAGTAACAG
27407651 TATCACAGCAAAACTGCCAGTAACAG
1 TATCACAGCAAAACTGCCAGTAACAG
27407677 TAT
1 TAT
27407680 ATGTGGCAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.38, C:0.24, G:0.18, T:0.20
Consensus pattern (26 bp):
TATCACAGCAAAACTGCCAGTAACAG
Found at i:27407933 original size:27 final size:27
Alignment explanation
Indices: 27407911--27408105 Score: 229
Period size: 27 Copynumber: 7.3 Consensus size: 27
27407901 AGGGGTATAA
27407911 CAGTCATTTTACCCTATGAGGGTATTT
1 CAGTCATTTTACCCTATGAGGGTATTT
* * * *
27407938 CGGTCATTCTACCCAATGGGGGTATTT
1 CAGTCATTTTACCCTATGAGGGTATTT
* *
27407965 CGGTCATTTTACCCTATGGGGGTATTT
1 CAGTCATTTTACCCTATGAGGGTATTT
* *
27407992 CAATCATTTAACCCTATGAGGGTATTT
1 CAGTCATTTTACCCTATGAGGGTATTT
*
27408019 CAGTCAATTTACCCTAT-AGGGGTATTT
1 CAGTCATTTTACCCTATGA-GGGTATTT
27408046 CAGTCATTTTACCCTAT---GGTATTT
1 CAGTCATTTTACCCTATGAGGGTATTT
* *
27408070 CGGTCAATTTACCCTAT-AGGGGTATTT
1 CAGTCATTTTACCCTATGA-GGGTATTT
*
27408097 CGGTCATTT
1 CAGTCATTT
27408106 ATTGACCTCT
Statistics
Matches: 147, Mismatches: 17, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
24 22 0.15
26 1 0.01
27 124 0.84
ACGTcount: A:0.22, C:0.19, G:0.20, T:0.39
Consensus pattern (27 bp):
CAGTCATTTTACCCTATGAGGGTATTT
Found at i:27414836 original size:26 final size:28
Alignment explanation
Indices: 27414807--27414868 Score: 76
Period size: 27 Copynumber: 2.3 Consensus size: 28
27414797 TCTTATCCTT
27414807 ATTTTAACCCCAG-TAAA-ATTTTGACG
1 ATTTTAACCCCAGATAAATATTTTGACG
* * *
27414833 ATTTT-ACCCCCGATAAATTTTTTGATG
1 ATTTTAACCCCAGATAAATATTTTGACG
27414860 ATTTTAACC
1 ATTTTAACC
27414869 TTTATAAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 6 0.20
26 9 0.30
27 12 0.40
28 3 0.10
ACGTcount: A:0.31, C:0.19, G:0.10, T:0.40
Consensus pattern (28 bp):
ATTTTAACCCCAGATAAATATTTTGACG
Found at i:27424220 original size:9 final size:9
Alignment explanation
Indices: 27424206--27424230 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
27424196 CTGATGTACT
27424206 GTTAGTCCA
1 GTTAGTCCA
27424215 GTTAGTCCA
1 GTTAGTCCA
27424224 GTTAGTC
1 GTTAGTC
27424231 ACATATATGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.20, C:0.20, G:0.24, T:0.36
Consensus pattern (9 bp):
GTTAGTCCA
Found at i:27428436 original size:27 final size:26
Alignment explanation
Indices: 27428398--27428489 Score: 105
Period size: 27 Copynumber: 3.4 Consensus size: 26
27428388 AATATGCTAG
* *
27428398 AAAAAAGAAGCTTCTGTGTCTATGTAT
1 AAAAAGGAAGCTT-TGTGTCTATCTAT
27428425 AAAAAGGAAGCTTTTGTGGT-TATCTAT
1 AAAAAGGAAGC-TTTGT-GTCTATCTAT
*
27428452 AAAAAGGAAGTCTTTGTGACTATCTAT
1 AAAAAGGAAG-CTTTGTGTCTATCTAT
*
27428479 GAAAAGGAAGC
1 AAAAAGGAAGC
27428490 CTTCGTGGAG
Statistics
Matches: 57, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
26 2 0.04
27 50 0.88
28 5 0.09
ACGTcount: A:0.38, C:0.10, G:0.22, T:0.30
Consensus pattern (26 bp):
AAAAAGGAAGCTTTGTGTCTATCTAT
Found at i:27435032 original size:27 final size:26
Alignment explanation
Indices: 27435002--27435108 Score: 74
Period size: 27 Copynumber: 4.0 Consensus size: 26
27434992 AATGCATTTG
27435002 TGGCGAATCATGAAGGGATAGCCTCTT
1 TGGCGAATCATGAA-GGATAGCCTCTT
* * * * *
27435029 TGGCGAACCTTGCAATGATAGCCTATG
1 TGGCGAATCATG-AAGGATAGCCTCTT
* * *
27435056 TGGCATAAT-ATGAAAGAAATGCCT-TT
1 TGGC-GAATCATGAAGGATA-GCCTCTT
27435082 GTGGCGAATCATGAAGGGATAGCCTCT
1 -TGGCGAATCATGAA-GGATAGCCTCT
27435109 ATGGTGAACC
Statistics
Matches: 59, Mismatches: 14, Indels: 13
0.69 0.16 0.15
Matches are distributed among these distances:
26 9 0.15
27 42 0.71
28 8 0.14
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (26 bp):
TGGCGAATCATGAAGGATAGCCTCTT
Found at i:27435153 original size:81 final size:80
Alignment explanation
Indices: 27434986--27435163 Score: 225
Period size: 81 Copynumber: 2.2 Consensus size: 80
27434976 AACATGTTAG
* * * * *
27434986 GAAAGGAATGCATTTGTGGCGAATCATGAAGGGATAGCCTCTTTGGCGAACCTTGCAATGATAGC
1 GAAA-GAATGCCTTTGTGGCGAATCATGAAGGGATAGCCTCTATGGCGAACCCTGCAACGATAAC
27435051 CTATGTGGCATAATAT
65 CTATGTGGCATAATAT
*
27435067 GAAAGAAATGCCTTTGTGGCGAATCATGAAGGGATAGCCTCTATGGTGAACCCTGCAACGA-AAC
1 GAAAG-AATGCCTTTGTGGCGAATCATGAAGGGATAGCCTCTATGGCGAACCCTGCAACGATAAC
* *
27435131 CTTTGTGGCGA-AATGT
65 CTATGTGGC-ATAATAT
*
27435147 GAAAAGAATGTCTTTGT
1 G-AAAGAATGCCTTTGT
27435164 CACAAACTTC
Statistics
Matches: 85, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
80 26 0.31
81 59 0.69
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.26
Consensus pattern (80 bp):
GAAAGAATGCCTTTGTGGCGAATCATGAAGGGATAGCCTCTATGGCGAACCCTGCAACGATAACC
TATGTGGCATAATAT
Found at i:27436423 original size:18 final size:18
Alignment explanation
Indices: 27436400--27436441 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
27436390 TATTACATGT
27436400 TTAGTACCTCATACTAAA
1 TTAGTACCTCATACTAAA
27436418 TTAGTACCTCATACTAAA
1 TTAGTACCTCATACTAAA
27436436 TTAGTA
1 TTAGTA
27436442 GAATTAGTAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.38, C:0.19, G:0.07, T:0.36
Consensus pattern (18 bp):
TTAGTACCTCATACTAAA
Found at i:27437361 original size:19 final size:20
Alignment explanation
Indices: 27437330--27437367 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
27437320 TAAATTTCAA
27437330 AATTTTTATAAA-TATTTTG
1 AATTTTTATAAATTATTTTG
27437349 AATTTTTGA-AAATTATTTT
1 AATTTTT-ATAAATTATTTT
27437368 TTAAAAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (20 bp):
AATTTTTATAAATTATTTTG
Found at i:27441804 original size:26 final size:25
Alignment explanation
Indices: 27441764--27441819 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 25
27441754 ATAATTTGTA
* * *
27441764 ATAAATTATATAAATAAATAATAAT
1 ATAAAATATAAAAATAAATAAAAAT
*
27441789 AGTAAAATATAAAAATACATAAAAAT
1 A-TAAAATATAAAAATAAATAAAAAT
27441815 ATAAA
1 ATAAA
27441820 TAAATGAACT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
25 5 0.19
26 21 0.81
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.29
Consensus pattern (25 bp):
ATAAAATATAAAAATAAATAAAAAT
Done.