genome.fa.s145.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3788
Parameters: 2 7 7 80 10 50 1000
Length:  111137

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1462--1868	47	8.8	47	92	5	661	32	7	30	29	1.86
1462--1868	93	4.4	92	91	6	644	32	7	30	29	1.86
1462--1868	139	2.9	140	92	5	650	32	7	30	29	1.86
1694--1772	25	3.3	25	61	10	65	32	5	29	32	1.79
1987--2064	36	2.1	37	90	2	122	24	19	32	24	1.98
3918--4016	43	2.3	43	100	0	198	23	15	34	27	1.94
4002--4074	28	2.5	30	87	10	100	27	16	31	24	1.96
4383--4696	40	7.9	40	86	3	361	25	21	27	24	2.00
8380--8667	47	6.1	47	92	0	432	32	9	30	28	1.88
8786--8864	37	2.1	37	88	4	115	25	18	30	25	1.98
17052--17131	38	2.1	38	95	0	142	20	25	26	28	1.99
17064--17156	38	2.4	38	89	0	132	20	20	25	33	1.97
17150--17263	46	2.6	46	86	8	148	22	25	27	24	2.00
19365--19504	48	2.9	48	85	1	181	22	30	20	26	1.99
29116--29162	22	2.1	22	100	0	94	36	4	12	46	1.62
30638--30662	11	2.3	11	100	0	50	72	0	0	28	0.86
34657--34807	43	3.5	43	80	6	137	28	22	19	29	1.98
42447--42518	20	3.7	19	83	10	92	36	12	19	31	1.89
42563--42633	26	2.8	26	87	4	110	26	23	21	28	1.99
50381--50462	42	2.0	42	82	4	103	19	36	26	17	1.94
57885--58112	54	4.2	54	78	1	215	26	15	17	39	1.90
57885--58112	27	8.4	27	79	3	190	26	15	17	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57890--58112	81	2.8	81	82	1	277	26	14	17	40	1.89
60741--60853	42	2.7	41	79	2	118	44	17	21	16	1.87
64228--64260	13	2.5	13	100	0	66	0	33	48	18	1.48
78391--78508	45	2.7	45	83	7	129	23	27	21	27	1.99
78847--79065	43	5.1	43	88	1	316	31	33	24	11	1.91
79037--79141	38	2.8	38	89	0	147	31	28	20	20	1.97
99028--99085	18	3.1	18	87	5	80	10	36	32	20	1.87
101435--101615	40	4.5	41	82	8	214	24	22	28	24	1.99
109588--109732	40	3.6	39	81	8	159	24	22	28	25	1.99

Tables:   1

The End!