Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3685
Parameters: 2 7 7 80 10 50 1000
Length:  104426

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4387--4429
15
3.2
15
69
30
51
65
0
6
27
1.18
4380--4429
25
2.0
25
100
0
100
64
0
8
28
1.22
5184--5212
12
2.4
12
100
0
58
48
0
17
34
1.47
10074--10148
31
2.4
32
84
10
93
44
4
1
50
1.29
10148--10404
7
35.9
7
68
24
121
64
2
2
29
1.19
10176--10333
6
24.0
6
69
16
64
67
2
1
27
1.14
10204--10294
19
4.6
19
75
10
74
70
2
3
24
1.14
10181--10249
11
6.6
11
76
15
67
69
4
2
23
1.20
10183--10363
55
3.4
54
79
11
176
66
2
2
29
1.16
10267--10362
20
4.8
19
76
19
74
63
0
1
35
1.01
10228--10404
80
2.2
83
78
13
197
64
1
2
31
1.15
10282--10350
26
2.7
26
90
2
104
63
0
0
36
0.94
10225--10355
48
2.6
48
75
19
117
65
1
1
31
1.11
10231--10408
15
13.1
14
80
14
117
64
1
3
31
1.17
10230--10451
8
28.2
8
68
25
79
62
1
3
32
1.21
10225--10380
48
3.2
50
77
15
116
64
1
1
32
1.12
10211--10412
15
13.8
14
74
20
75
65
0
3
29
1.15
10428--10511
26
3.6
23
69
13
64
53
3
1
41
1.26
16160--16190
15
2.1
15
100
0
62
19
12
0
67
1.22
16865--16898
16
2.1
17
94
5
61
64
0
11
23
1.26
17799--17860
16
4.0
15
74
13
54
20
9
11
58
1.61
17817--17867
16
3.2
16
97
0
93
21
11
13
52
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19185--19218
14
2.4
14
90
5
50
67
0
17
14
1.23
20489--20628
8
16.9
8
69
14
70
60
0
4
35
1.16
20495--20579
34
2.5
33
76
17
86
62
0
2
35
1.08
20525--20610
25
3.4
24
72
13
73
59
0
4
36
1.18
21008--21035
13
2.2
13
100
0
56
46
0
7
46
1.30
21189--21238
19
2.5
21
84
9
70
36
2
0
62
1.07
21214--21256
9
4.8
9
85
0
50
34
2
0
62
1.08
21308--21346
17
2.3
17
86
8
53
23
2
5
69
1.21
21407--21466
31
1.9
31
96
0
111
41
1
8
48
1.43
21513--21544
15
2.0
17
88
11
50
31
3
9
56
1.47
22166--22208
18
2.4
18
88
0
59
69
6
13
9
1.35
26932--26962
15
2.1
15
100
0
62
12
19
19
48
1.81
30387--30470
20
4.4
19
73
23
70
33
5
1
59
1.29
30392--30441
16
2.8
17
85
11
57
36
8
0
56
1.29
35045--35078
17
2.0
17
94
0
59
38
2
11
47
1.55
42310--42343
13
2.6
13
86
13
52
44
0
0
55
0.99
44052--44108
24
2.4
23
78
16
64
42
0
0
57
0.98
44082--44120
15
2.6
15
84
11
53
43
0
0
56
0.99
44300--44338
21
1.9
21
94
5
71
30
25
10
33
1.89
46858--46882
12
2.1
12
100
0
50
44
0
8
48
1.32
58618--58657
13
2.8
15
85
14
66
35
0
0
65
0.93
61413--61441
14
2.1
14
100
0
58
27
13
6
51
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65599--65667
21
3.3
21
87
2
95
11
24
8
55
1.64
68027--68120
18
5.4
18
92
3
131
28
9
25
36
1.87
76377--76404
14
2.0
14
100
0
56
14
14
0
71
1.15
76401--76474
6
13.2
6
78
18
72
33
1
17
47
1.56
76402--76478
11
7.5
11
79
15
94
33
1
18
46
1.57
76396--76474
30
2.6
30
83
13
99
32
2
16
48
1.60
76416--76477
5
12.0
5
76
17
56
33
1
17
46
1.58
76402--76478
20
3.8
21
83
16
108
33
1
18
46
1.57
80877--81019
36
3.9
37
85
9
175
48
5
16
29
1.68
80877--81020
37
3.9
37
87
5
184
48
5
16
29
1.69
80877--81021
75
1.9
75
86
4
204
48
5
17
28
1.69
81525--81571
24
2.0
22
84
8
58
40
2
4
53
1.32
85380--85429
15
3.5
15
82
15
61
28
24
6
42
1.78
85473--85503
15
2.1
15
100
0
62
54
0
38
6
1.26
93467--94430
208
4.7
207
85
7
1231
28
17
22
30
1.97
93510--94430
411
2.2
408
85
7
1210
29
17
22
30
1.97
95805--95953
39
3.9
39
86
6
189
47
5
17
29
1.70
98815--98858
22
1.9
22
90
9
70
38
9
6
45
1.63
100040--100070
15
2.1
15
100
0
62
25
6
12
54
1.62

Tables:   1

The End!