Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold3196
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24917
ACGTcount: A:0.22, C:0.26, G:0.30, T:0.22
Found at i:2129 original size:42 final size:42
Alignment explanation
Indices: 2025--2316 Score: 319
Period size: 42 Copynumber: 6.9 Consensus size: 42
2015 GAGCCTCCAT
*
2025 CACCTTGGTGGC-TCGGATGTGTGGGAGCCTC-AGCCACCATCGG
1 CACCTTGGT-GCAT-GGATGTGCGGGAGCCTCGAG-CACCATCGG
* * *
2068 TAACCTTGATGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
1 -CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
* *
2111 CACCTTGGTGCATGGATGTGCGGGAGCATCG-GACACCACCGG
1 CACCTTGGTGCATGGATGTGCGGGAGCCTCGAG-CACCATCGG
* * ** * *
2153 CAAACTAGGCCCTTGGTTGTG-GGGAGCCTCGGAG-ACCATCGG
1 C-ACCTTGGTGCATGGATGTGCGGGAGCCTC-GAGCACCATCGG
*
2195 CACCTCGGTGCTAT-GATGTGCGGGAGCCTCGAGCACCATCGG
1 CACCTTGGTGC-ATGGATGTGCGGGAGCCTCGAGCACCATCGG
*
2237 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
1 CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
*
2279 CACCTTGGTGCATGGATGAGCGGGAGCCTTC-AGCACCA
1 CACCTTGGTGCATGGATGTGCGGGAGCC-TCGAGCACCA
2317 AAGCTAAAGT
Statistics
Matches: 211, Mismatches: 26, Indels: 24
0.81 0.10 0.09
Matches are distributed among these distances:
41 16 0.08
42 141 0.67
43 43 0.20
44 11 0.05
ACGTcount: A:0.17, C:0.28, G:0.34, T:0.20
Consensus pattern (42 bp):
CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
Found at i:2552 original size:24 final size:24
Alignment explanation
Indices: 2525--2603 Score: 106
Period size: 24 Copynumber: 3.3 Consensus size: 24
2515 CCGGTTAGGT
*
2525 TCCCGGTGGTGCTCCGGCGATCCG
1 TCCCGGTGGTGCTCCGGCGAACCG
*
2549 TCCCGGCGGTGCTCCGGCGAACCG
1 TCCCGGTGGTGCTCCGGCGAACCG
*
2573 TCCC-GTCGGTGCTCCGGTGAACCG
1 TCCCGGT-GGTGCTCCGGCGAACCG
*
2597 TTCCGGT
1 TCCCGGT
2604 AGCATAGGCC
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
23 1 0.02
24 45 0.94
25 2 0.04
ACGTcount: A:0.06, C:0.38, G:0.35, T:0.20
Consensus pattern (24 bp):
TCCCGGTGGTGCTCCGGCGAACCG
Found at i:2685 original size:42 final size:43
Alignment explanation
Indices: 2621--3757 Score: 801
Period size: 43 Copynumber: 27.2 Consensus size: 43
2611 GCCCTTGGTC
*
2621 GTGCGGGAGCCTCGGGCACCATCGGCAACCT-GGTGCTAGGAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * * * * **
2663 GTGCAGGAGCCCCGGACACCATCGGCAAACTAAGCCCTTGGTAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGG-AT
* * *
2707 -TGC-GGAGCCTCGGGCGCCATCGGC-ACCTCGGTGCTTCGAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
**
2747 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* *
2789 CGTGCGGTAGCCTCGGGCACCATCGGC-ACCTCGGTGCTAT-GAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCT-TGGAT
* ** **
2832 GTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* *
2874 CGTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * * * **
2917 GTGCGAGAACCTCGCGTACCATCGGCAACCTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * * * **
2959 CGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* ** **
3002 CGTGCGGGAGCCTCGGCCACCATCGGCAAAATAGGCCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * **
3045 CGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* *
3088 CGTGCGGGAGCCTCGGCCACCATCGGC-ACCTCGGTGCTAT-GAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCT-TGGAT
* * ** **
3131 GGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* *
3173 CGTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * * * * **
3216 GTCCGAGAACCTCGCGCACCATCGACAACCTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * * * **
3258 CGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
** **
3301 CGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * *
3344 CGTGCGGGAGCCTCGGCCACCATCGGC-TCCTAGGTGCTGGGAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * **
3387 GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * *
3429 CGTGCGGGAGCCTCGAGCACCATCGAC-ACCTTGGTGCTTGGAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * ***
3472 GTGCCGGAACCTCGGGCACCATCGGCAACCTAGACCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * * ** **
3514 CGTGCGAGAGGCTCGGGCACCATCGGTAAAATAGGCCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
*
3557 CGTGCGGG-GCCTCGGCCACCATCGGC--CC----T--TTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* *
3591 CGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGGCTCGGAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGT-GCTTGGAT
*** *
3635 GTGCGGGAGCCTC--G--CC-TCGG-TGGCTA-G-G--AGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * *
3667 GCG--GGAGCCTCGGACACCATCGGCAA-CTTGGTGCTTGGAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* *
3707 GTGCGGGAGCCTCGGGCACCCATCGGC-ACCTTGGTGCCTGGGAT
1 GTGCGGGAGCCTCGGGCA-CCATCGGCAACCTAGGTG-CTTGGAT
3751 GTGCGGG
1 GTGCGGG
3758 CTAAAGAAGA
Statistics
Matches: 883, Mismatches: 157, Indels: 108
0.77 0.14 0.09
Matches are distributed among these distances:
30 8 0.01
32 3 0.00
33 2 0.00
34 15 0.02
35 24 0.03
36 3 0.00
37 2 0.00
38 6 0.01
39 4 0.00
40 6 0.01
41 12 0.01
42 293 0.33
43 489 0.55
44 16 0.02
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (43 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
Found at i:2834 original size:85 final size:86
Alignment explanation
Indices: 2608--3618 Score: 1003
Period size: 85 Copynumber: 12.0 Consensus size: 86
2598 TCCGGTAGCA
** * *
2608 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCT-GGTGCTAGGAT-GTGCAGGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGA
* * *
2671 GCCCCGGACACCATCGGCAAAC
65 GCCTCGGGCACCATCGGCAACC
* ** * * ** *
2693 TAAGCCCTTGGTATTGC-GGAGCCTCGGGCGCCATCGGC-ACCTCGGTGCTTCGAT-GTGCGGGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTCGTGCGGGA
2755 GCCTCGGGCACCATCGGCAACC
65 GCCTCGGGCACCATCGGCAACC
* * ** *
2777 TAGGCCCTTGGTCGTGCGGTAGCCTCGGGCACCATCGGC-ACCTCGGTGCTATGAT-GTGCGGGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTCGTGCGGGA
* **
2840 GCCTCGGACACTGTCGGCAACC
65 GCCTCGGGCACCATCGGCAACC
* * ** *
2862 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGAGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGA
* * *
2925 ACCTCGCGTACCATCGGCAACC
65 GCCTCGGGCACCATCGGCAACC
* * * *
2947 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* **
3012 CCTCGGCCACCATCGGCAAAA
66 CCTCGGGCACCATCGGCAACC
* *
3033 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
*
3098 CCTCGGCCACCATCGGC-ACC
66 CCTCGGGCACCATCGGCAACC
* ** * * * **
3118 TCGGTGCTATGAT-GGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGGA
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
*
3182 GCCTCGAGCACCATCGGC-ACC
65 GCCTCGGGCACCATCGGCAACC
* ** * * * * * *
3203 TTGGTGCTTGGAT-GTCCGAGAACCTCGCGCACCATCGACAACCTAGGCCCTTGGTCGTGCGAGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* *
3267 GGCTCGGGCACCATCGGCAAAC
65 GCCTCGGGCACCATCGGCAACC
* **
3289 TAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* *
3354 CCTCGGCCACCATCGGC-TCC
66 CCTCGGGCACCATCGGCAACC
** * * *
3374 TAGGTGCTGGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* *
3438 GCCTCGAGCACCATCGAC-ACC
65 GCCTCGGGCACCATCGGCAACC
* ** * * * *
3459 TTGGTGCTTGGAT-GTGCCGGAACCTCGGGCACCATCGGCAACCTAGACCCTTGGTCGTGCGAGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* * **
3523 GGCTCGGGCACCATCGGTAAAA
65 GCCTCGGGCACCATCGGCAACC
*
3545 TAGGCCCTTGGTCGTGCGGG-GCCTCGGCCACCATCGGC--CCT------TTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
3601 CCTCGGGCACCATCGGCA
66 CCTCGGGCACCATCGGCA
3619 CCTTGGTGGC
Statistics
Matches: 788, Mismatches: 124, Indels: 36
0.83 0.13 0.04
Matches are distributed among these distances:
77 30 0.04
83 7 0.01
84 71 0.09
85 482 0.61
86 198 0.25
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (86 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
CCTCGGGCACCATCGGCAACC
Found at i:3141 original size:256 final size:253
Alignment explanation
Indices: 2621--3648 Score: 1056
Period size: 256 Copynumber: 4.1 Consensus size: 253
2611 GCCCTTGGTC
* ** * *
2621 GTGCGGGAGCCTCGGGCACCATCGGCAACCT-GGTGCTAGGAT-GTGC-AGGAGCCCCG-GACAC
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGA-GAGCCTCGAG-CAC
* * * * ** **
2682 CATCGGCAAACTAAGCCCTTGGTAT-TGCGGAGCCTCGGGCGCCATCGGC-ACCTCGGTGCTTCG
63 CATCGGC-ACCTAGGCCCTTGG-ATGTGCGGAACCTCGGGCACCATCGGCAACCTAAGCCCTT-G
* * ** *
2745 AT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGTAGCCTCGGGCAC
125 GTCGTGCGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
* * ** * * ** **
2809 CATCGGCACCTCGGTGCTATGAT-GTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGG
190 CATCGGCAACTAGGCCCT-TGGTCGTGCGGGAGCCTCGGCCACCATCGGC-ACCTAGGTGC-TGG
2873 -T
252 AT
* ** * * *
2874 CGTGCGGGAGCCTC-GAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGAGAACCTCGCGTAC
1 -GTGCGGGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGAGCAC
** *
2936 CATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTG
63 CATCGGC-ACCTAGGCCCTTGGAT-GTGCG-GAACCTCGGGCACCATCGGCAACCTAAGCCCTTG
* * *
3000 GTCGTGCGGGAGCCTCGGCCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGACAC
125 GTCGTGCGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
* *
3065 CATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTCGGTGCTATGA
190 CATCGGC-AACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGTGCT-GGA
3130 T
253 T
* ** *
3131 GGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCAT
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCAT
* ** * * * *
3196 CGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCACCATCGACAACCTAGGCCCTTGGTCGT
66 CGGCACCTAGGCCCTTGGATGTGCG-GAACCTCGGGCACCATCGGCAACCTAAGCCCTTGGTCGT
* * *
3261 GCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG
130 GCGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG
* *
3326 GCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCTCCTAGGTGCTGGGAT
195 GC-AACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGTGCT-GGAT
* *
3387 GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCAT
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCAT
* * **
3452 CGACACCTTGGTGCTTGGATGTGCCGGAACCTCGGGCACCATCGGCAACCT-AGACCCTTGGTCG
66 CGGCACCTAGGCCCTTGGATGTG-CGGAACCTCGGGCACCATCGGCAACCTAAG-CCCTTGGTCG
* * *
3516 TGCGAGAGGCTCGGGCACCATCGGTAAAATAGGCCCTTGGTCGTGCGGG-GCCTCGGCCACCATC
129 TGCGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
* * *
3580 GG---C----CCTTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTCGGAT
194 GGCAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGT-GCT-GGAT
3635 GTGCGGGAGCCTCG
1 GTGCGGGAGCCTCG
3649 CCTCGGTGGC
Statistics
Matches: 672, Mismatches: 82, Indels: 46
0.84 0.10 0.06
Matches are distributed among these distances:
247 39 0.06
248 21 0.03
252 1 0.00
253 5 0.01
254 69 0.10
255 40 0.06
256 428 0.64
257 69 0.10
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (253 bp):
GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCAT
CGGCACCTAGGCCCTTGGATGTGCGGAACCTCGGGCACCATCGGCAACCTAAGCCCTTGGTCGTG
CGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
CAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGTGCTGGAT
Found at i:3438 original size:299 final size:299
Alignment explanation
Indices: 2679--3618 Score: 1209
Period size: 299 Copynumber: 3.2 Consensus size: 299
2669 GAGCCCCGGA
** * ** * **
2679 CACCATCGGCAAACTAAGCCCTTGGTATTGC-GGAGCCTCGGGCGCCATCGGC-ACCTCGGTGCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
* * * *
2742 TCGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGTAGCCTCGGG
66 T-GGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGA
2806 CACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTT
130 CACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTT
*
2871 GGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGTAC
195 GGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGCAC
2936 CATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
260 CATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
*
2976 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAAAATAGGCCCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
* *
3041 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCC
66 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGAC
*
3106 ACCATCGGCACCTCGGTGCTATGATGGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
131 ACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
*
3171 GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCACC
196 GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGCACC
*
3236 ATCGACAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
261 ATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
3275 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
* * ** *
3340 TGGTCGTGCGGGAGCCTCGGCCACCATCGGC-TCCTAGGTGCTGGGAT-GTGCGGGAGCCTCGGA
66 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGA
* * ** * ** * * **
3403 CACCATCGGCAAACTAGGCCCT-TGGTCGTGCGGGAGCCTC-GAGCACCATCGAC-ACCTTGGTG
130 CACCATCGGC-ACCTCGGTGCTATGAT-GTGCGGGAGCCTCGGA-CACTGTCGGCAACCTAGGCC
* * * * *** **
3465 CTTGGAT-GTGCCGGAACCTCGGGCACCATCGGCAACCTAGACCCTTGG-TCGTGCGAGAGGCTC
192 CTTGG-TCGTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGAGAACCTC
* * ** *
3528 GGGCACCATCGGTAAAATAGGCCCTTGGTCGTGCG-G-GGCCTCGGC
254 GCGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGG-CTCGGG
*
3573 CACCATCGG----C----CCTTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
3619 CCTTGGTGGC
Statistics
Matches: 577, Mismatches: 55, Indels: 29
0.87 0.08 0.04
Matches are distributed among these distances:
290 35 0.06
294 1 0.00
297 31 0.05
298 110 0.19
299 400 0.69
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (299 bp):
CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGAC
ACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGCACC
ATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
Found at i:3625 original size:35 final size:33
Alignment explanation
Indices: 3547--3625 Score: 122
Period size: 35 Copynumber: 2.3 Consensus size: 33
3537 CGGTAAAATA
3547 GGCCCTTGGTCGTGCGGGGCCTCGGCCACCATC
1 GGCCCTTGGTCGTGCGGGGCCTCGGCCACCATC
*
3580 GGCCCTTTGGTCGTGCGGGAGCCTCGGGCACCATC
1 GGCCC-TTGGTCGTGCGGG-GCCTCGGCCACCATC
3615 GGCACCTTGGT
1 GGC-CCTTGGT
3626 GGCTCGGATG
Statistics
Matches: 42, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
33 5 0.12
34 13 0.31
35 22 0.52
36 2 0.05
ACGTcount: A:0.08, C:0.35, G:0.37, T:0.20
Consensus pattern (33 bp):
GGCCCTTGGTCGTGCGGGGCCTCGGCCACCATC
Found at i:11392 original size:48 final size:48
Alignment explanation
Indices: 11313--11406 Score: 138
Period size: 48 Copynumber: 2.0 Consensus size: 48
11303 AGGGAATTCT
* *
11313 GTTGAATCCTTTATTGTTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
1 GTTGAATCCATTATTGGTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
11361 GTTGAATCCATTATTGGTG-GAAGTT-AGGCTGACTTAGGCGTTTTTA
1 GTTGAATCCATTATTGGTGCG-AGTTGA-GCTGACTTAGGCGTTTTTA
11407 AGCCAAGAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
47 2 0.05
48 40 0.95
ACGTcount: A:0.19, C:0.13, G:0.28, T:0.40
Consensus pattern (48 bp):
GTTGAATCCATTATTGGTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
Found at i:13908 original size:48 final size:48
Alignment explanation
Indices: 13829--13922 Score: 138
Period size: 48 Copynumber: 2.0 Consensus size: 48
13819 AGGGAATTCT
* *
13829 GTTGAATCCTTTATTGTTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
1 GTTGAATCCATTATTGGTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
13877 GTTGAATCCATTATTGGTG-GAAGTT-AGGCTGACTTAGGCGTTTTTA
1 GTTGAATCCATTATTGGTGCG-AGTTGA-GCTGACTTAGGCGTTTTTA
13923 AGCCAAGAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
47 2 0.05
48 40 0.95
ACGTcount: A:0.19, C:0.13, G:0.28, T:0.40
Consensus pattern (48 bp):
GTTGAATCCATTATTGGTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
Found at i:14899 original size:42 final size:42
Alignment explanation
Indices: 14789--15080 Score: 292
Period size: 42 Copynumber: 6.9 Consensus size: 42
14779 GAGCCTCCAT
*
14789 CACCTTGGTGGC-TCGGATGTGTGGGAGCCTC-AGCCACCATCGG
1 CACCTTGGT-GCAT-GGATGTGCGGGAGCCTCGAG-CACCATCGG
* * * * *
14832 TAACCTTGATGCTTGGACGTACGGGAGCCTCGAGCACCATCGG
1 -CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
* *
14875 CACCTTGGTGCATGGATGTGCGGGAGCATCG-GACACCACCGG
1 CACCTTGGTGCATGGATGTGCGGGAGCCTCGAG-CACCATCGG
* * ** * *
14917 CAAACTAGGCCCTTGGTTGTG-GGGAGCCTCGGAG-ACCATCGG
1 C-ACCTTGGTGCATGGATGTGCGGGAGCCTC-GAGCACCATCGG
*
14959 CACCTCGGTGCTAT-GATGTGCGGGAGCCTCGAGCACCATCGG
1 CACCTTGGTGC-ATGGATGTGCGGGAGCCTCGAGCACCATCGG
* *
15001 CACCTTGGTACTTGGATGTGCGGGAGCCTCGAGCACCATCGG
1 CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
*
15043 CACCTTGGTGCATGGATGAGCGGGAGCCTTC-AGCACCA
1 CACCTTGGTGCATGGATGTGCGGGAGCC-TCGAGCACCA
15081 AAGCTAAAGT
Statistics
Matches: 205, Mismatches: 32, Indels: 24
0.79 0.12 0.09
Matches are distributed among these distances:
41 16 0.08
42 137 0.67
43 41 0.20
44 11 0.05
ACGTcount: A:0.18, C:0.29, G:0.34, T:0.20
Consensus pattern (42 bp):
CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
Found at i:15315 original size:24 final size:24
Alignment explanation
Indices: 15288--15366 Score: 106
Period size: 24 Copynumber: 3.3 Consensus size: 24
15278 CCGGTTAGGT
*
15288 TCCCGGTGGTGCTCCGGCGATCCG
1 TCCCGGTGGTGCTCCGGCGAACCG
*
15312 TCCCGGCGGTGCTCCGGCGAACCG
1 TCCCGGTGGTGCTCCGGCGAACCG
*
15336 TCCC-GTCGGTGCTCCGGTGAACCG
1 TCCCGGT-GGTGCTCCGGCGAACCG
*
15360 TTCCGGT
1 TCCCGGT
15367 AGCATAGGCC
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
23 1 0.02
24 45 0.94
25 2 0.04
ACGTcount: A:0.06, C:0.38, G:0.35, T:0.20
Consensus pattern (24 bp):
TCCCGGTGGTGCTCCGGCGAACCG
Found at i:15597 original size:85 final size:86
Alignment explanation
Indices: 15371--16517 Score: 1100
Period size: 85 Copynumber: 13.5 Consensus size: 86
15361 TCCGGTAGCA
** * *
15371 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCT-GGTGCTAGGAT-GTGCAGGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGA
* * *
15434 GCCCCGGACACCATCGGCAAAC
65 GCCTCGGGCACCATCGGCAACC
* ** * * ** *
15456 TAAGCCCTTGGTATTGC-GGAGCCTCGGGCGCCATCGGC-ACCTCGGTGCTTCGAT-GTGCGGGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTCGTGCGGGA
15518 GCCTCGGGCACCATCGGCAACC
65 GCCTCGGGCACCATCGGCAACC
* * ** *
15540 TAGGCCCTTGGTCGTGCGGTAGCCTCGGGCACCATCGGC-ACCTCGGTGCTATGAT-GTGCGGGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTCGTGCGGGA
* **
15603 GCCTCGGACACTGTCGGCAACC
65 GCCTCGGGCACCATCGGCAACC
* * ** *
15625 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGAGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGA
* * *
15688 ACCTCGCGTACCATCGGCAACC
65 GCCTCGGGCACCATCGGCAACC
* * * *
15710 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* **
15775 CCTCGGCCACCATCGGCAAAA
66 CCTCGGGCACCATCGGCAACC
* *
15796 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
*
15861 CCTCGGCCACCATCGGC-ACC
66 CCTCGGGCACCATCGGCAACC
* ** * * * **
15881 TCGGTGCTATGAT-GGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGGA
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
*
15945 GCCTCGAGCACCATCGGC-ACC
65 GCCTCGGGCACCATCGGCAACC
* ** * * * * * *
15966 TTGGTGCTTGGAT-GTCCGAGAACCTCGCGCACCATCGACAACCTAGGCCCTTGGTCGTGCGAGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* *
16030 GGCTCGGGCACCATCGGCAAAC
65 GCCTCGGGCACCATCGGCAACC
* **
16052 TAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* *
16117 CCTCGGCCACCATCGGC-TCC
66 CCTCGGGCACCATCGGCAACC
** * * *
16137 TAGGTGCTGGGAT-GTGCGGGAGCCTCGGACA-CATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* *
16200 GCCTCGAGCACCATCGAC-ACC
65 GCCTCGGGCACCATCGGCAACC
* ** * * * *
16221 TTGGTGCTTGGAT-GTGCCGGAACCTCGGGCACCATCGGCAACCTAGACCCTTGGTCGTGCGAGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* **
16285 GGCTCGGGCACCATCGGCAAAA
65 GCCTCGGGCACCATCGGCAACC
* * *
16307 TAGGCCCTTGGTCGTGCGGGGGCCTCGGCCACCATCGGC-ACCTGGGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
16371 CCTCGGGCACCATCGGC-ACC
66 CCTCGGGCACCATCGGCAACC
* ** * * * ** * **
16391 TTGGTGGCTCGGAT-GTGCGGGAGCCTCGGGCAGCATCGGC-ACCTCGGTGGCTAGGAGGTGCGG
1 TAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGGTCGTGCGG
*
16454 GAGCCTCGGACACCATCGGCAA-C
63 GAGCCTCGGGCACCATCGGCAACC
* **
16477 TTGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCCATCGGCA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA-CCATCGGCA
16518 CCTTGGTGCC
Statistics
Matches: 897, Mismatches: 144, Indels: 40
0.83 0.13 0.04
Matches are distributed among these distances:
83 4 0.00
84 149 0.17
85 487 0.54
86 256 0.29
87 1 0.00
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (86 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
CCTCGGGCACCATCGGCAACC
Found at i:16048 original size:299 final size:299
Alignment explanation
Indices: 15442--16504 Score: 1278
Period size: 299 Copynumber: 3.6 Consensus size: 299
15432 GAGCCCCGGA
** * ** * **
15442 CACCATCGGCAAACTAAGCCCTTGGTATTGC-GGAGCCTCGGGCGCCATCGGC-ACCTCGGTGCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
* * * *
15505 TCGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGTAGCCTCGGG
66 T-GGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGA
15569 CACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTT
130 CACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTT
*
15634 GGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGTAC
195 GGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGCAC
15699 CATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
260 CATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
*
15739 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAAAATAGGCCCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
* *
15804 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCC
66 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGAC
*
15869 ACCATCGGCACCTCGGTGCTATGATGGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
131 ACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
*
15934 GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCACC
196 GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGCACC
*
15999 ATCGACAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
261 ATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
16038 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
* * ** *
16103 TGGTCGTGCGGGAGCCTCGGCCACCATCGGC-TCCTAGGTGCTGGGAT-GTGCGGGAGCCTCGGA
66 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGA
* * ** * ** * * **
16166 CA-CATCGGCAAACTAGGCCCT-TGGTCGTGCGGGAGCCTC-GAGCACCATCGAC-ACCTTGGTG
130 CACCATCGGC-ACCTCGGTGCTATGAT-GTGCGGGAGCCTCGGA-CACTGTCGGCAACCTAGGCC
* * * * *** **
16227 CTTGGAT-GTGCCGGAACCTCGGGCACCATCGGCAACCTAGACCCTTGG-TCGTGCGAGAGGCTC
192 CTTGG-TCGTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGAGAACCTC
* ** * *
16290 GGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCG-GGGGCCTCGGC
254 GCGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGG-CTCGGG
* ** ** * **
16336 CACCATCGGC-ACCTGGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGGC
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGG-CCC
* * * * ** * **
16399 TCGGAT-GTGCGGGAGCCTCGGGCAGCATCGGC-ACCTCGGTGGCTAGGAGGTGCGGGAGCCTCG
65 TTGG-TCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGG-CCCTTGGTCGTGCGGGAGCCTCG
* *
16462 GACACCATCGGCAACTTGGTGCT-TGGATGTGCGGGAGCCTCGG
128 GACACCATCGGCACCTCGGTGCTAT-GATGTGCGGGAGCCTCGG
16505 GCACCCATCG
Statistics
Matches: 674, Mismatches: 74, Indels: 34
0.86 0.09 0.04
Matches are distributed among these distances:
296 4 0.01
297 151 0.22
298 186 0.28
299 333 0.49
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (299 bp):
CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGAC
ACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGCACC
ATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
Found at i:16409 original size:128 final size:126
Alignment explanation
Indices: 15371--16540 Score: 1023
Period size: 128 Copynumber: 9.2 Consensus size: 126
15361 TCCGGTAGCA
* ** * *
15371 TAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCT-GGTGCTAGGAT-GTGCAG
1 TAGGTCCCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGCGG
* * * * *
15432 GAGCCCCGGACACCATCGGCAAACTAAGCCCTTGGTATTGC-GGAGCCTCGGGCGCCATCGGCAC
64 GAGCCTCGG-CACCATCGGC-ACCTAGGCCCTTGGT-GTGCGGGAGCCTCGGGCACCATCGGCAC
15496 C
126 C
* * * * *
15497 TCGGT-GCTTCGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGTA
1 TAGGTCCCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
* ** * * **
15561 GCCTCGGGCACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACC
66 GCCTC-GGCACCATCGGCACCTAGGCCCT-TGGTGTGCGGGAGCCTCGGGCACCATCGGC-ACC
* * * ** *
15625 TAGG-CCCTTGG-TCGTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGA
1 TAGGTCCCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGCGG
* * * *
15686 GAACCTCGCGTACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAA
64 GAGCCTCG-GCACCATCGGC-ACCTAGGCCCTTGGT-GTGCGGGAGCCTCGGGCACCATCGGC-A
*
15751 AC
125 CC
* * *
15753 TAAG-CCCTTGG-TCGTGCGGGAGCCTCGGCCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGG
1 TAGGTCCCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGG
* *
15816 AGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACC
65 AGCCTCGG-CACCATCGGC-ACCTAGGCCCTTGGT-GTGCGGGAGCCTCGGGCACCATCGGCACC
* * * * ** *
15881 TCGGT-GCTAT-GATGGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGG
1 TAGGTCCCT-TGGATGTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGG
* ** * * * * *
15944 AGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCACCATCGACAACC
65 AGCCTCG-GCACCATCGGCACCTAGGCCCTTGG-TGTGCGGGAGCCTCGGGCACCATCGGC-ACC
* * *
16009 TAGG-CCCTTGG-TCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGG
1 TAGGTCCCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGG
** * *
16072 AGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCTCC
65 AGCCTC-GGCACCATCGGC-ACCTAGGCCCTTGGT-GTGCGGGAGCCTCGGGCACCATCGGCACC
* * *
16137 TAGGT-GCTGGGATGTGCGGGAGCCTCGGACA-CATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
1 TAGGTCCCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
* * ** * *
16200 GCCTCGAGCACCATCGACACCTTGGTGCTTGGATGTGCCGGAACCTCGGGCACCATCGGCAACC
66 GCCTCG-GCACCATCGGCACCTAGGCCCTTGG-TGTGCGGGAGCCTCGGGCACCATCGGC-ACC
* * * *
16264 TA-GACCCTTGG-TCGTGCGAGAGGCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGG
1 TAGGTCCCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGG
* *
16327 GGCCTCGGCCACCATCGGCACCTGGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACC
65 AGCCTCGG-CACCATCGGCACCTAGGCCCTTGGT-GTGCGGGAGCCTCGGGCACCATCGGCACC
* ** * * * * ** * **
16391 TTGGTGGCTCGGATGTGCGGGAGCCTCGGGCAGCATCGGC-ACCTCGGTGGCTAGGAGGTGCGGG
1 TAGGTCCCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAAACTAGG-CCCTTGGTCGTGCGGG
* * **
16455 AGCCTCGGACACCATCGGCAACTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCCATCGGCACC
65 AGCCTCGG-CACCATCGGCACCTAGGCCCTTGG-TGTGCGGGAGCCTCGGGCA-CCATCGGCACC
* * *
16520 TTGGTGCCTGGGATGTGCGGG
1 TAGGTCCCTTGGATGTGCGGG
16541 CTAAAGAAGA
Statistics
Matches: 848, Mismatches: 152, Indels: 85
0.78 0.14 0.08
Matches are distributed among these distances:
126 84 0.10
127 194 0.23
128 435 0.51
129 135 0.16
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (126 bp):
TAGGTCCCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
GCCTCGGCACCATCGGCACCTAGGCCCTTGGTGTGCGGGAGCCTCGGGCACCATCGGCACC
Found at i:16526 original size:43 final size:43
Alignment explanation
Indices: 15371--16517 Score: 1100
Period size: 43 Copynumber: 26.9 Consensus size: 43
15361 TCCGGTAGCA
15371 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
** * * * * *
15414 T-GGTGCTAGGAT-GTGCAGGAGCCCCGGACACCATCGGCAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** *
15456 TAAGCCCTTGGTATTGC-GGAGCCTCGGGCGCCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** *
15497 TCGGTGCTTCGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACC
1 TAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
15540 TAGGCCCTTGGTCGTGCGGTAGCCTCGGGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * **
15582 TCGGTGCTATGAT-GTGCGGGAGCCTCGGACACTGTCGGCAACC
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
15625 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * *
15667 TTGGTGCTTGGAT-GTGCGAGAACCTCGCGTACCATCGGCAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * *
15710 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * **
15753 TAAGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
15796 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
15839 TAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * **
15881 TCGGTGCTATGAT-GGGCGGGAGCCTCGGACACTGTCGGCAACC
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
15924 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * * *
15966 TTGGTGCTTGGAT-GTCCGAGAACCTCGCGCACCATCGACAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * *
16009 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* **
16052 TAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
16095 TAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC-TCC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
** * * *
16137 TAGGTGCTGGGAT-GTGCGGGAGCCTCGGACA-CATCGGCAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
16179 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGAC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * *
16221 TTGGTGCTTGGAT-GTGCCGGAACCTCGGGCACCATCGGCAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * * **
16264 TAGACCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
16307 TAGGCCCTTGGTCGTGCGGGGGCCTCGGCCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
16349 TGGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * *
16391 TTGGTGGCTCGGAT-GTGCGGGAGCCTCGGGCAGCATCGGC-ACC
1 TAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * ** *
16434 TCGGTGGCTAGGAGGTGCGGGAGCCTCGGACACCATCGGCAA-C
1 TAGG-CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* **
16477 TTGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCCATCGGCA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA-CCATCGGCA
16518 CCTTGGTGCC
Statistics
Matches: 905, Mismatches: 167, Indels: 64
0.80 0.15 0.06
Matches are distributed among these distances:
41 18 0.02
42 356 0.39
43 529 0.58
44 2 0.00
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (43 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
Found at i:24509 original size:42 final size:42
Alignment explanation
Indices: 24462--24730 Score: 183
Period size: 42 Copynumber: 6.4 Consensus size: 42
24452 TCGGATGTGT
*
24462 GGGAGCCTC-AGCCACCATCGGTAACCTTGATGCTTGGACGT-C
1 GGGAGCCTCGAG-CACCATCGG-AACCTTGATGCATGGACGTGC
* * *
24504 GGGAGCCTCGAGCACCATCGGCACCTTGGTGCATGGATGTGC
1 GGGAGCCTCGAGCACCATCGGAACCTTGATGCATGGACGTGC
* * * * *** * **
24546 GGGAGCATCG-GACACCACCGGCAAACTAGGCCCTTGGTTGTG-
1 GGGAGCCTCGAG-CACCATCGG-AACCTTGATGCATGGACGTGC
* * * *
24588 GGGAGCCTCGGAG-ACCATCGGCACCTCGGTGCTAT-GATGTGC
1 GGGAGCCTC-GAGCACCATCGGAACCTTGATGC-ATGGACGTGC
* * * * *
24630 GGGAGCCTCGAGCACCATCGGCACCTTGGTACTTGGATGTGC
1 GGGAGCCTCGAGCACCATCGGAACCTTGATGCATGGACGTGC
* * * *
24672 GGGAGCCTCGAGCACCATCGGCACCTTGGTGCATGGATGAGC
1 GGGAGCCTCGAGCACCATCGGAACCTTGATGCATGGACGTGC
24714 GGGAGCCTTC-AGCACCA
1 GGGAGCC-TCGAGCACCA
24731 AGCTAAAGTT
Statistics
Matches: 188, Mismatches: 28, Indels: 22
0.79 0.12 0.09
Matches are distributed among these distances:
41 31 0.16
42 138 0.73
43 18 0.10
44 1 0.01
ACGTcount: A:0.19, C:0.29, G:0.33, T:0.19
Consensus pattern (42 bp):
GGGAGCCTCGAGCACCATCGGAACCTTGATGCATGGACGTGC
Found at i:24550 original size:84 final size:82
Alignment explanation
Indices: 24440--24730 Score: 318
Period size: 84 Copynumber: 3.5 Consensus size: 82
24430 GAGCCTCCAT
* * * *
24440 CACCTTGGTGGC-TCGGATGTGTGGGAGCCTCAGCCACCATCGGTAACCTTGATGCTTGGACGTC
1 CACCTTGGT-GCAT-GGATGTGCGGGAGCCTCAG-CACCATCGG-AACCTTGGTACTTGGATGTC
24504 GGGAGCCTCGAGCACCATCGG
62 GGGAGCCTCGAGCACCATCGG
* * * * * ** * *
24525 CACCTTGGTGCATGGATGTGCGGGAGCATCGGACACCACCGGCAAACTAGGCCCTTGGTTGTGGG
1 CACCTTGGTGCATGGATGTGCGGGAGCCTCAG-CACCATCGG-AACCTTGGTACTTGGATGTCGG
24590 GAGCCTCGGAG-ACCATCGG
64 GAGCCTC-GAGCACCATCGG
* *
24609 CACCTCGGTGCTAT-GATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTACTTGGATGTGCG
1 CACCTTGGTGC-ATGGATGTGCGGGAGCCTC-AGCACCATCGGAACCTTGGTACTTGGATGT-CG
24673 GGAGCCTCGAGCACCATCGG
63 GGAGCCTCGAGCACCATCGG
*
24693 CACCTTGGTGCATGGATGAGCGGGAGCCTTCAGCACCA
1 CACCTTGGTGCATGGATGTGCGGGAGCC-TCAGCACCA
24731 AGCTAAAGTT
Statistics
Matches: 171, Mismatches: 27, Indels: 17
0.80 0.13 0.08
Matches are distributed among these distances:
83 18 0.11
84 135 0.79
85 18 0.11
ACGTcount: A:0.18, C:0.29, G:0.34, T:0.20
Consensus pattern (82 bp):
CACCTTGGTGCATGGATGTGCGGGAGCCTCAGCACCATCGGAACCTTGGTACTTGGATGTCGGGA
GCCTCGAGCACCATCGG
Done.