Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1382
Parameters: 2 7 7 80 10 50 1000
Length:  46140

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1998--2206
39
5.6
38
85
10
247
22
24
28
24
2.00
9947--10168
40
5.6
40
91
2
349
22
23
26
27
2.00
12218--12325
49
2.2
49
78
6
119
25
29
15
28
1.96
14224--14294
24
3.0
24
82
0
88
53
22
15
8
1.69
14517--14628
29
4.0
27
70
14
82
26
14
33
25
1.94
16344--16512
92
1.8
92
85
3
241
31
18
26
23
1.97
16392--16564
47
3.7
48
75
16
150
29
17
29
23
1.97
16341--16561
93
2.4
90
79
11
223
29
18
28
23
1.98
23899--24055
46
3.4
44
75
15
122
31
19
26
22
1.98
23939--24120
47
3.9
48
73
15
148
29
18
29
22
1.97
27713--28018
47
6.7
43
73
14
199
21
30
19
28
1.98
27659--28021
94
3.9
91
78
11
391
22
29
19
29
1.98
27659--28021
140
2.6
136
76
10
378
22
29
19
29
1.98
34462--34680
47
4.7
46
76
9
210
21
28
20
29
1.98
34319--34680
94
3.9
94
76
11
325
22
29
19
29
1.98
34320--34680
141
2.6
140
78
8
342
22
29
19
28
1.98
34321--34680
47
7.7
48
70
13
198
22
28
19
28
1.98
39435--39532
27
3.5
28
88
5
128
32
28
13
25
1.93

Tables:   1

The End!