Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold578

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 33499
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31


Found at i:22862 original size:21 final size:21

Alignment explanation


    Indices: 22836--22876  Score: 64
    Period size: 21  Copynumber: 2.0  Consensus size: 21

      22826 ATCTGCTCAA

                      * *        
      22836 ACTCCACCTGTTTTGGAGTAC
          1 ACTCCACCTGCTGTGGAGTAC

                                
      22857 ACTCCACCTGCTGTGGAGTA
          1 ACTCCACCTGCTGTGGAGTA

      22877 TTGCTCGTCT


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29


Consensus pattern (21 bp):   
ACTCCACCTGCTGTGGAGTAC

Found at i:27750 original size:21 final size:21

Alignment explanation


    Indices: 27724--27764  Score: 64
    Period size: 21  Copynumber: 2.0  Consensus size: 21

      27714 ATCTGCTCAA

                      * *        
      27724 ACTCCACCTGTTTTGGAGTAC
          1 ACTCCACCTGCTGTGGAGTAC

                                
      27745 ACTCCACCTGCTGTGGAGTA
          1 ACTCCACCTGCTGTGGAGTA

      27765 TGCTCGTCTG


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29


Consensus pattern (21 bp):   
ACTCCACCTGCTGTGGAGTAC
Done.