genome.fa.s1485.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2920
Parameters: 2 7 7 80 10 50 1000
Length:  26939

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1049--1092	19	2.3	19	88	4	61	86	4	9	0	0.70
1049--1082	18	1.9	18	94	5	61	88	5	5	0	0.64
2343--2389	25	2.0	25	83	8	62	27	14	4	53	1.60
2737--2896	76	2.0	80	88	9	238	23	26	16	32	1.96
2650--2907	46	6.0	45	86	8	274	21	24	15	37	1.93
2783--2896	38	3.0	38	100	0	228	23	26	18	31	1.97
5094--5158	31	2.1	30	83	8	78	55	3	1	40	1.25
7754--7800	25	2.0	25	83	8	62	27	14	4	53	1.60
8061--8280	46	5.0	46	83	9	260	21	24	15	38	1.92
8194--8269	38	2.0	38	100	0	152	23	26	18	31	1.97
11934--13082	85	13.6	85	93	1	1943	28	23	27	20	1.99
13120--13397	133	2.1	135	83	4	357	31	19	20	28	1.97
14165--14214	26	1.9	26	87	0	73	26	28	16	30	1.96
14672--14905	126	1.9	126	91	0	387	38	17	17	27	1.92
15491--15654	3	54.7	3	69	11	79	63	3	3	30	1.25
15491--15654	23	6.8	24	65	17	72	63	3	3	30	1.25
15508--15546	14	2.7	15	88	4	62	76	0	0	23	0.78
15494--15541	20	2.4	21	86	6	64	70	0	0	29	0.87
15491--15639	17	8.8	17	65	21	64	63	2	3	30	1.25
15890--15979	45	2.0	45	95	0	162	41	13	8	36	1.76
16060--16129	29	2.4	30	87	2	97	21	0	45	32	1.52
16083--16140	13	4.2	13	77	16	62	17	0	44	37	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16442--16483	13	3.1	14	80	13	52	61	4	0	33	1.17
18252--18306	27	2.1	27	86	3	76	45	1	5	47	1.36

Tables:   1

The End!