Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67659327
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 461372 characters in sequence are not A, C, G, or T
File 103 of 216
Found at i:32287753 original size:21 final size:23
Alignment explanation
Indices: 32287708--32287754 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
32287698 TCACCTGCAA
* *
32287708 TAAACACATTAAAATGAGTTTAT
1 TAAACACATTAAAATCAGCTTAT
32287731 TAAACACATTAAAA-CA-CTTAT
1 TAAACACATTAAAATCAGCTTAT
32287752 TAA
1 TAA
32287755 TCATAACACA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 7 0.32
22 1 0.05
23 14 0.64
ACGTcount: A:0.51, C:0.13, G:0.04, T:0.32
Consensus pattern (23 bp):
TAAACACATTAAAATCAGCTTAT
Found at i:32289810 original size:19 final size:18
Alignment explanation
Indices: 32289774--32289813 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
32289764 TTTCCACTCG
*
32289774 TTTCTTTTTCAACTTCTC
1 TTTCTTTTTCAACATCTC
*
32289792 TTTCTTTTTCCACAATCTC
1 TTTCTTTTTCAAC-ATCTC
32289811 TTT
1 TTT
32289814 GTTTGTTGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.12, C:0.28, G:0.00, T:0.60
Consensus pattern (18 bp):
TTTCTTTTTCAACATCTC
Found at i:32290890 original size:14 final size:14
Alignment explanation
Indices: 32290871--32290924 Score: 85
Period size: 13 Copynumber: 4.0 Consensus size: 14
32290861 AAACTAGCTC
32290871 TTTTTTTTT-ACAA
1 TTTTTTTTTCACAA
32290884 TTTTTTTTTCACAA
1 TTTTTTTTTCACAA
*
32290898 -TTTTTTTTCAAAA
1 TTTTTTTTTCACAA
32290911 TTTTTTTTTCACAA
1 TTTTTTTTTCACAA
32290925 CTTGATATCC
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
13 21 0.57
14 16 0.43
ACGTcount: A:0.24, C:0.11, G:0.00, T:0.65
Consensus pattern (14 bp):
TTTTTTTTTCACAA
Found at i:32290902 original size:27 final size:27
Alignment explanation
Indices: 32290871--32290924 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
32290861 AAACTAGCTC
* *
32290871 TTTTTTTTTACAATTTTTTTTTCACAA
1 TTTTTTTTCAAAATTTTTTTTTCACAA
32290898 TTTTTTTTCAAAATTTTTTTTTCACAA
1 TTTTTTTTCAAAATTTTTTTTTCACAA
32290925 CTTGATATCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.24, C:0.11, G:0.00, T:0.65
Consensus pattern (27 bp):
TTTTTTTTCAAAATTTTTTTTTCACAA
Found at i:32290979 original size:11 final size:11
Alignment explanation
Indices: 32290963--32291003 Score: 64
Period size: 11 Copynumber: 3.6 Consensus size: 11
32290953 GGAAACTAGT
32290963 TTTTTTTTGAA
1 TTTTTTTTGAA
32290974 TTTTTTTTGAA
1 TTTTTTTTGAA
*
32290985 TTTTTTTTCGAG
1 TTTTTTTT-GAA
32290997 TTTTTTT
1 TTTTTTT
32291004 CGAGAAACTA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
11 19 0.68
12 9 0.32
ACGTcount: A:0.12, C:0.02, G:0.10, T:0.76
Consensus pattern (11 bp):
TTTTTTTTGAA
Found at i:32290979 original size:12 final size:12
Alignment explanation
Indices: 32290962--32291003 Score: 59
Period size: 12 Copynumber: 3.6 Consensus size: 12
32290952 TGGAAACTAG
32290962 TTTTTTTTTGAA
1 TTTTTTTTTGAA
32290974 -TTTTTTTTGAA
1 TTTTTTTTTGAA
* *
32290985 TTTTTTTTCGAG
1 TTTTTTTTTGAA
32290997 TTTTTTT
1 TTTTTTT
32291004 CGAGAAACTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
11 11 0.41
12 16 0.59
ACGTcount: A:0.12, C:0.02, G:0.10, T:0.76
Consensus pattern (12 bp):
TTTTTTTTTGAA
Found at i:32295083 original size:23 final size:22
Alignment explanation
Indices: 32295032--32295083 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
32295022 CCTCGTCTTT
*
32295032 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
32295054 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
32295077 TTCTTTT
1 TTCTTTT
32295084 TCAATTTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:32313500 original size:11 final size:10
Alignment explanation
Indices: 32313475--32313535 Score: 54
Period size: 10 Copynumber: 6.1 Consensus size: 10
32313465 ACCAATAAAA
32313475 TAAA-TGAGC
1 TAAATTGAGC
*
32313484 TGAATTGTAGC
1 TAAATTG-AGC
32313495 TAAATTGAGC
1 TAAATTGAGC
**
32313505 TCGATTGAGC
1 TAAATTGAGC
32313515 TGAAA-TGAGC
1 T-AAATTGAGC
*
32313525 TCAATTGAGC
1 TAAATTGAGC
32313535 T
1 T
32313536 GGTCGGAGTT
Statistics
Matches: 41, Mismatches: 7, Indels: 7
0.75 0.13 0.13
Matches are distributed among these distances:
9 5 0.12
10 26 0.63
11 10 0.24
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.30
Consensus pattern (10 bp):
TAAATTGAGC
Found at i:32313536 original size:20 final size:20
Alignment explanation
Indices: 32313476--32313536 Score: 79
Period size: 20 Copynumber: 3.0 Consensus size: 20
32313466 CCAATAAAAT
*
32313476 AAATGAGCTGAATTGTAGCT-
1 AAATGAGCTCAATTG-AGCTG
*
32313496 AAATTGAGCTCGATTGAGCTG
1 AAA-TGAGCTCAATTGAGCTG
32313517 AAATGAGCTCAATTGAGCTG
1 AAATGAGCTCAATTGAGCTG
32313537 GTCGGAGTTG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
20 23 0.64
21 13 0.36
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.28
Consensus pattern (20 bp):
AAATGAGCTCAATTGAGCTG
Found at i:32315205 original size:27 final size:27
Alignment explanation
Indices: 32315174--32315249 Score: 68
Period size: 27 Copynumber: 2.8 Consensus size: 27
32315164 TTACTTTCTC
32315174 CTTTTTCACTCTTCTCTTTTTCAA-ATT
1 CTTTTTCACT-TTCTCTTTTTCAATATT
* * *
32315201 CTTTTTTCGCTTTTTCTTTTTCAATTTT
1 C-TTTTTCACTTTCTCTTTTTCAATATT
32315229 CTTTTCTTCA-TTT-TCTTTTTC
1 C-TTT-TTCACTTTCTCTTTTTC
32315250 TCTCACTTTT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
27 21 0.50
28 18 0.43
29 3 0.07
ACGTcount: A:0.09, C:0.22, G:0.01, T:0.67
Consensus pattern (27 bp):
CTTTTTCACTTTCTCTTTTTCAATATT
Found at i:32315228 original size:13 final size:12
Alignment explanation
Indices: 32315212--32315331 Score: 70
Period size: 12 Copynumber: 10.0 Consensus size: 12
32315202 TTTTTTCGCT
32315212 TTTTCTTTTTCAA
1 TTTTCTTTTTC-A
32315225 TTTTCTTTTCTTCA
1 TTTTC-TTT-TTCA
32315239 TTTTCTTTTTC-
1 TTTTCTTTTTCA
**
32315250 TCTCACTTTTTCA
1 T-TTTCTTTTTCA
*
32315263 ATTTCTTTTTC-
1 TTTTCTTTTTCA
** *
32315274 TTTTGCAATTTCT
1 TTTT-CTTTTTCA
* *
32315287 TTTTCTTCTTCG
1 TTTTCTTTTTCA
*
32315299 TTTTCTTTTT-G
1 TTTTCTTTTTCA
32315310 TTTTC--TTTCA
1 TTTTCTTTTTCA
*
32315320 ATTTCTTTTTCA
1 TTTTCTTTTTCA
32315332 ATCTCTTTCT
Statistics
Matches: 83, Mismatches: 15, Indels: 19
0.71 0.13 0.16
Matches are distributed among these distances:
9 3 0.04
10 4 0.05
11 10 0.12
12 42 0.51
13 12 0.14
14 9 0.11
15 3 0.04
ACGTcount: A:0.09, C:0.19, G:0.03, T:0.69
Consensus pattern (12 bp):
TTTTCTTTTTCA
Found at i:32315228 original size:14 final size:14
Alignment explanation
Indices: 32315168--32315272 Score: 62
Period size: 14 Copynumber: 7.7 Consensus size: 14
32315158 GCTCGATTAC
*
32315168 TTTCTCCTTTTTCAC
1 TTTCT-CTTTTTCAA
32315183 TCTTCTCTTTTTCAA
1 T-TTCTCTTTTTCAA
* **
32315198 ATTCT-TTTTTCGC
1 TTTCTCTTTTTCAA
*
32315211 TTTTTCTTTTTCAA
1 TTTCTCTTTTTCAA
32315225 TTT-TCTTTTCTTC-A
1 TTTCTC-TTT-TTCAA
32315239 TTT-TCTTTTTC--
1 TTTCTCTTTTTCAA
* *
32315250 TCTCACTTTTTCAA
1 TTTCTCTTTTTCAA
32315264 TTTCT-TTTT
1 TTTCTCTTTT
32315273 CTTTTGCAAT
Statistics
Matches: 71, Mismatches: 12, Indels: 16
0.72 0.12 0.16
Matches are distributed among these distances:
11 2 0.03
12 10 0.14
13 18 0.25
14 25 0.35
15 12 0.17
16 4 0.06
ACGTcount: A:0.10, C:0.23, G:0.01, T:0.67
Consensus pattern (14 bp):
TTTCTCTTTTTCAA
Found at i:32315330 original size:6 final size:6
Alignment explanation
Indices: 32315210--32315317 Score: 65
Period size: 6 Copynumber: 17.7 Consensus size: 6
32315200 TCTTTTTTCG
* * * **
32315210 CTTTTT CTTTTT CAATTTT CTTTTCTT CATTTT CTTTTT CTCTCA CTTTTT
1 CTTTTT CTTTTT C-TTTTT C-TTT-TT CTTTTT CTTTTT CTTTTT CTTTTT
** * ** * *
32315261 CAATTT CTTTTT CTTTTG CAATTT CTTTTT CTTCTT CGTTTT CTTTTT
1 CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT
*
32315309 -GTTTT CTTT
1 CTTTTT CTTT
32315318 CAATTTCTTT
Statistics
Matches: 72, Mismatches: 27, Indels: 6
0.69 0.26 0.06
Matches are distributed among these distances:
5 4 0.06
6 56 0.78
7 9 0.12
8 3 0.04
ACGTcount: A:0.07, C:0.19, G:0.03, T:0.70
Consensus pattern (6 bp):
CTTTTT
Found at i:32316382 original size:18 final size:18
Alignment explanation
Indices: 32316361--32316422 Score: 70
Period size: 18 Copynumber: 3.4 Consensus size: 18
32316351 TTTAACTCGA
*
32316361 TTTTTTTGTCACTTCTTT
1 TTTTTTTCTCACTTCTTT
*** *
32316379 TTTTTTTCCTTTTTTTTTT
1 TTTTTTT-CTCACTTCTTT
32316398 TTTTTTTCTCACTTCTTT
1 TTTTTTTCTCACTTCTTT
32316416 TTTTTTT
1 TTTTTTT
32316423 TGAATTGATT
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
18 21 0.62
19 13 0.38
ACGTcount: A:0.03, C:0.15, G:0.02, T:0.81
Consensus pattern (18 bp):
TTTTTTTCTCACTTCTTT
Found at i:32316385 original size:19 final size:19
Alignment explanation
Indices: 32316361--32316423 Score: 74
Period size: 19 Copynumber: 3.4 Consensus size: 19
32316351 TTTAACTCGA
*
32316361 TTTTTTTGTCACTTCTTTT
1 TTTTTTTCTCACTTCTTTT
* ** *
32316380 TTTTTTCCT-TTTTTTTTT
1 TTTTTTTCTCACTTCTTTT
32316398 TTTTTTTCTCACTTCTTTT
1 TTTTTTTCTCACTTCTTTT
32316417 TTTTTTT
1 TTTTTTT
32316424 GAATTGATTT
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
18 14 0.41
19 20 0.59
ACGTcount: A:0.03, C:0.14, G:0.02, T:0.81
Consensus pattern (19 bp):
TTTTTTTCTCACTTCTTTT
Found at i:32316400 original size:15 final size:16
Alignment explanation
Indices: 32316361--32316399 Score: 55
Period size: 14 Copynumber: 2.6 Consensus size: 16
32316351 TTTAACTCGA
*
32316361 TTTTTTTGTCACTTCT
1 TTTTTTTTTCACTTCT
32316377 TTTTTTTTTC-CTT-T
1 TTTTTTTTTCACTTCT
32316391 TTTTTTTTT
1 TTTTTTTTT
32316400 TTTTTCTCAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 10 0.45
15 3 0.14
16 9 0.41
ACGTcount: A:0.03, C:0.13, G:0.03, T:0.82
Consensus pattern (16 bp):
TTTTTTTTTCACTTCT
Found at i:32316435 original size:37 final size:37
Alignment explanation
Indices: 32316361--32316439 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
32316351 TTTAACTCGA
* ** **
32316361 TTTTTTTGTCACTTCTTTTTTTTTTCCTTTTTTTTTT
1 TTTTTTTCTCACTTCTTTTTTTTTTCCAATTGATTTT
**
32316398 TTTTTTTCTCACTTCTTTTTTTTTTTGAATTGATTTT
1 TTTTTTTCTCACTTCTTTTTTTTTTCCAATTGATTTT
32316435 TTTTT
1 TTTTT
32316440 GAAACTTTTT
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.06, C:0.11, G:0.04, T:0.78
Consensus pattern (37 bp):
TTTTTTTCTCACTTCTTTTTTTTTTCCAATTGATTTT
Found at i:32317719 original size:11 final size:10
Alignment explanation
Indices: 32317694--32317754 Score: 54
Period size: 10 Copynumber: 6.1 Consensus size: 10
32317684 ACCAATAAAA
32317694 TAAA-TGAGC
1 TAAATTGAGC
*
32317703 TGAATTGTAGC
1 TAAATTG-AGC
32317714 TAAATTGAGC
1 TAAATTGAGC
**
32317724 TCGATTGAGC
1 TAAATTGAGC
32317734 TGAAA-TGAGC
1 T-AAATTGAGC
*
32317744 TCAATTGAGC
1 TAAATTGAGC
32317754 T
1 T
32317755 GGTCGGAGTT
Statistics
Matches: 41, Mismatches: 7, Indels: 7
0.75 0.13 0.13
Matches are distributed among these distances:
9 5 0.12
10 26 0.63
11 10 0.24
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.30
Consensus pattern (10 bp):
TAAATTGAGC
Found at i:32317755 original size:20 final size:20
Alignment explanation
Indices: 32317695--32317755 Score: 79
Period size: 20 Copynumber: 3.0 Consensus size: 20
32317685 CCAATAAAAT
*
32317695 AAATGAGCTGAATTGTAGCT-
1 AAATGAGCTCAATTG-AGCTG
*
32317715 AAATTGAGCTCGATTGAGCTG
1 AAA-TGAGCTCAATTGAGCTG
32317736 AAATGAGCTCAATTGAGCTG
1 AAATGAGCTCAATTGAGCTG
32317756 GTCGGAGTTG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
20 23 0.64
21 13 0.36
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.28
Consensus pattern (20 bp):
AAATGAGCTCAATTGAGCTG
Found at i:32330265 original size:26 final size:26
Alignment explanation
Indices: 32330228--32330281 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
32330218 TCAATGTCTT
32330228 TATGAACCGCTTCTTCCAAATCAGTG
1 TATGAACCGCTTCTTCCAAATCAGTG
*
32330254 TATGAACTGCTTCTTCCAAATCAGTG
1 TATGAACCGCTTCTTCCAAATCAGTG
32330280 TA
1 TA
32330282 AGTTTGTAGC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.28, C:0.24, G:0.15, T:0.33
Consensus pattern (26 bp):
TATGAACCGCTTCTTCCAAATCAGTG
Found at i:32335159 original size:17 final size:15
Alignment explanation
Indices: 32335122--32335160 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 15
32335112 TATCTCCCAC
32335122 TCATCTTCTTTTTCTT
1 TCAT-TTCTTTTTCTT
32335138 TCATTTCTTTTTCATGT
1 TCATTTCTTTTTC-T-T
32335155 TCATTT
1 TCATTT
32335161 TCTCGCTCGC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 9 0.43
16 5 0.24
17 7 0.33
ACGTcount: A:0.10, C:0.21, G:0.03, T:0.67
Consensus pattern (15 bp):
TCATTTCTTTTTCTT
Found at i:32336050 original size:30 final size:30
Alignment explanation
Indices: 32336014--32336081 Score: 93
Period size: 30 Copynumber: 2.3 Consensus size: 30
32336004 CAATCACTCT
* *
32336014 TTTTTTTTTCAATTTC-GATTTTTTTTCTTC
1 TTTTTTTTT-AATTCCAAATTTTTTTTCTTC
32336044 TTTTTTTTTAATTCCAAATTTTTTTTCTTC
1 TTTTTTTTTAATTCCAAATTTTTTTTCTTC
*
32336074 TTCTTTTT
1 TTTTTTTT
32336082 CCTTCAATAC
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
29 5 0.15
30 29 0.85
ACGTcount: A:0.12, C:0.13, G:0.01, T:0.74
Consensus pattern (30 bp):
TTTTTTTTTAATTCCAAATTTTTTTTCTTC
Found at i:32336145 original size:13 final size:12
Alignment explanation
Indices: 32336127--32336187 Score: 72
Period size: 13 Copynumber: 5.1 Consensus size: 12
32336117 GAATACAAAC
*
32336127 TTTTTTTTTGAA
1 TTTTTTTTTCAA
32336139 TTTTTTTTTCAAA
1 TTTTTTTTTC-AA
32336152 TTTTTTTTTCAA
1 TTTTTTTTTCAA
32336164 GTTTTTTTTT--A
1 -TTTTTTTTTCAA
*
32336175 TTTTTTTTACAA
1 TTTTTTTTTCAA
32336187 T
1 T
32336188 ACCGTAATAT
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
10 8 0.19
11 1 0.02
12 13 0.30
13 21 0.49
ACGTcount: A:0.18, C:0.05, G:0.03, T:0.74
Consensus pattern (12 bp):
TTTTTTTTTCAA
Found at i:32344622 original size:20 final size:20
Alignment explanation
Indices: 32344583--32344643 Score: 70
Period size: 20 Copynumber: 3.0 Consensus size: 20
32344573 CCAATAAAAT
*
32344583 AAATGAGCTGAATTGTAGCT-
1 AAATGAGCTCAATTG-AGCTG
* *
32344603 AAATTGATCTCGATTGAGCTG
1 AAA-TGAGCTCAATTGAGCTG
32344624 AAATGAGCTCAATTGAGCTG
1 AAATGAGCTCAATTGAGCTG
32344644 GTCGGAGTTG
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
20 22 0.65
21 12 0.35
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.30
Consensus pattern (20 bp):
AAATGAGCTCAATTGAGCTG
Found at i:32346324 original size:11 final size:12
Alignment explanation
Indices: 32346294--32346325 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
32346284 TTTCACTCTT
32346294 CTCTTTTTCAAA
1 CTCTTTTTCAAA
32346306 CTCTTTTTCAAA
1 CTCTTTTTCAAA
*
32346318 TTCTTTTT
1 CTCTTTTT
32346326 TCGCTTTTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.19, C:0.22, G:0.00, T:0.59
Consensus pattern (12 bp):
CTCTTTTTCAAA
Found at i:32346337 original size:27 final size:27
Alignment explanation
Indices: 32346307--32346368 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
32346297 TTTTTCAAAC
*
32346307 TCTTTTTCAAATTCTT-TTTTC-GCTTTT
1 TCTTTTTC-AATT-TTCTTTTCTGCATTT
*
32346334 TCTTTTTCAATTTTCTTTTCTTCATTT
1 TCTTTTTCAATTTTCTTTTCTGCATTT
32346361 TCTTTTTC
1 TCTTTTTC
32346369 TCTCACTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
25 2 0.06
26 9 0.29
27 20 0.65
ACGTcount: A:0.10, C:0.19, G:0.02, T:0.69
Consensus pattern (27 bp):
TCTTTTTCAATTTTCTTTTCTGCATTT
Found at i:32346347 original size:13 final size:12
Alignment explanation
Indices: 32346331--32346449 Score: 54
Period size: 12 Copynumber: 10.0 Consensus size: 12
32346321 TTTTTTCGCT
32346331 TTTTCTTTTTCAA
1 TTTTCTTTTTC-A
32346344 TTTTCTTTTCTTCA
1 TTTTC-TTT-TTCA
32346358 TTTTCTTTTTC-
1 TTTTCTTTTTCA
**
32346369 TCTCACTTTTTCGA
1 T-TTTCTTTTTC-A
32346383 -TTT-TTTTTC-
1 TTTTCTTTTTCA
** *
32346392 TTTTGCAATTTCT
1 TTTT-CTTTTTCA
* *
32346405 TTTTCTTCTTCG
1 TTTTCTTTTTCA
*
32346417 TTTTCTTTTT-G
1 TTTTCTTTTTCA
32346428 TTTTC--TTTCA
1 TTTTCTTTTTCA
*
32346438 ATTTCTTTTTCA
1 TTTTCTTTTTCA
32346450 ATCTCTTTCT
Statistics
Matches: 81, Mismatches: 13, Indels: 25
0.68 0.11 0.21
Matches are distributed among these distances:
9 3 0.04
10 7 0.09
11 13 0.16
12 34 0.42
13 12 0.15
14 9 0.11
15 3 0.04
ACGTcount: A:0.08, C:0.18, G:0.03, T:0.70
Consensus pattern (12 bp):
TTTTCTTTTTCA
Found at i:32346360 original size:14 final size:14
Alignment explanation
Indices: 32346309--32346367 Score: 52
Period size: 14 Copynumber: 4.3 Consensus size: 14
32346299 TTTCAAACTC
*
32346309 TTTTTCAA-ATTCT
1 TTTTTCAATTTTCT
**
32346322 TTTTTCGCTTTT-T
1 TTTTTCAATTTTCT
32346335 CTTTTTCAATTTTCT
1 -TTTTTCAATTTTCT
32346350 TTTCTTC-ATTTTCT
1 TTT-TTCAATTTTCT
32346364 TTTT
1 TTTT
32346368 CTCTCACTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
13 8 0.22
14 25 0.68
15 4 0.11
ACGTcount: A:0.10, C:0.17, G:0.02, T:0.71
Consensus pattern (14 bp):
TTTTTCAATTTTCT
Found at i:32346404 original size:41 final size:39
Alignment explanation
Indices: 32346335--32346448 Score: 117
Period size: 39 Copynumber: 2.9 Consensus size: 39
32346325 TTCGCTTTTT
*
32346335 CTTTTTCAATTTTCTTTTC-TTCATTTTCTTTTTC-TCTCA
1 CTTTTTC-ATTTTCTTTTCTTTCAATTTCTTTTTCTTCT-A
*
32346374 CTTTTTCGATTTT-TTTTCTTTTGCAATTTCTTTTTCTTCTT
1 CTTTTTC-ATTTTCTTTTC-TTT-CAATTTCTTTTTCTTCTA
* * *
32346415 CGTTTTCTTTTTGTTTTCTTTCAATTTCTTTTTC
1 CTTTTTCATTTTCTTTTCTTTCAATTTCTTTTTC
32346449 AATCTCTTTC
Statistics
Matches: 65, Mismatches: 5, Indels: 10
0.81 0.06 0.12
Matches are distributed among these distances:
38 5 0.08
39 25 0.38
40 9 0.14
41 23 0.35
42 3 0.05
ACGTcount: A:0.08, C:0.19, G:0.04, T:0.69
Consensus pattern (39 bp):
CTTTTTCATTTTCTTTTCTTTCAATTTCTTTTTCTTCTA
Found at i:32346440 original size:39 final size:39
Alignment explanation
Indices: 32346337--32346448 Score: 113
Period size: 41 Copynumber: 2.8 Consensus size: 39
32346327 CGCTTTTTCT
* * *
32346337 TTTTCAATTTTCTTTTC-TTCATTTTCTTTTTCTCTCACT
1 TTTTCGATTTT-TTTTCTTTCAATTTCTTTTTCTCTCACG
*
32346376 TTTTCGATTTTTTTTCTTTTGCAATTTCTTTTTCT-TCTTCG
1 TTTTCGATTTTTTTTC-TTT-CAATTTCTTTTTCTCTC-ACG
*
32346417 TTTTC-TTTTTGTTTTCTTTCAATTTCTTTTTC
1 TTTTCGATTTT-TTTTCTTTCAATTTCTTTTTC
32346449 AATCTCTTTC
Statistics
Matches: 63, Mismatches: 5, Indels: 10
0.81 0.06 0.13
Matches are distributed among these distances:
38 5 0.08
39 23 0.37
40 11 0.17
41 24 0.38
ACGTcount: A:0.08, C:0.19, G:0.04, T:0.70
Consensus pattern (39 bp):
TTTTCGATTTTTTTTCTTTCAATTTCTTTTTCTCTCACG
Found at i:32346448 original size:6 final size:6
Alignment explanation
Indices: 32346329--32346435 Score: 56
Period size: 6 Copynumber: 17.7 Consensus size: 6
32346319 TCTTTTTTCG
* * * **
32346329 CTTTTT CTTTTT CAATTTT CTTTTCTT CATTTT CTTTTT CTCTCA CTTTTT
1 CTTTTT CTTTTT C-TTTTT C-TTT-TT CTTTTT CTTTTT CTTTTT CTTTTT
** * ** * *
32346380 CGATTT -TTTTT CTTTTG CAATTT CTTTTT CTTCTT CGTTTT CTTTTT
1 CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT
*
32346427 -GTTTT CTTT
1 CTTTTT CTTT
32346436 CAATTTCTTT
Statistics
Matches: 70, Mismatches: 27, Indels: 8
0.67 0.26 0.08
Matches are distributed among these distances:
5 7 0.10
6 51 0.73
7 9 0.13
8 3 0.04
ACGTcount: A:0.07, C:0.19, G:0.04, T:0.71
Consensus pattern (6 bp):
CTTTTT
Found at i:32347571 original size:18 final size:17
Alignment explanation
Indices: 32347525--32347571 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 17
32347515 TTTTTTGCTC
32347525 ACTTCTTTTTTTTTTTGA
1 ACTT-TTTTTTTTTTTGA
32347543 A-TTTTGATTTTTTTTTGAA
1 ACTTTT--TTTTTTTTTG-A
32347562 ACTTTTTTTT
1 ACTTTTTTTT
32347572 ACAAACCTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
16 2 0.08
17 2 0.08
18 15 0.60
19 2 0.08
20 4 0.16
ACGTcount: A:0.15, C:0.06, G:0.06, T:0.72
Consensus pattern (17 bp):
ACTTTTTTTTTTTTTGA
Found at i:32348848 original size:11 final size:10
Alignment explanation
Indices: 32348823--32348883 Score: 54
Period size: 10 Copynumber: 6.1 Consensus size: 10
32348813 ACCAATAAAA
32348823 TAAA-TGAGC
1 TAAATTGAGC
*
32348832 TGAATTGTAGC
1 TAAATTG-AGC
32348843 TAAATTGAGC
1 TAAATTGAGC
**
32348853 TCGATTGAGC
1 TAAATTGAGC
32348863 TGAAA-TGAGC
1 T-AAATTGAGC
*
32348873 TCAATTGAGC
1 TAAATTGAGC
32348883 T
1 T
32348884 GGTCGGAGTT
Statistics
Matches: 41, Mismatches: 7, Indels: 7
0.75 0.13 0.13
Matches are distributed among these distances:
9 5 0.12
10 26 0.63
11 10 0.24
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.30
Consensus pattern (10 bp):
TAAATTGAGC
Found at i:32348884 original size:20 final size:20
Alignment explanation
Indices: 32348824--32348884 Score: 79
Period size: 20 Copynumber: 3.0 Consensus size: 20
32348814 CCAATAAAAT
*
32348824 AAATGAGCTGAATTGTAGCT-
1 AAATGAGCTCAATTG-AGCTG
*
32348844 AAATTGAGCTCGATTGAGCTG
1 AAA-TGAGCTCAATTGAGCTG
32348865 AAATGAGCTCAATTGAGCTG
1 AAATGAGCTCAATTGAGCTG
32348885 GTCGGAGTTG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
20 23 0.64
21 13 0.36
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.28
Consensus pattern (20 bp):
AAATGAGCTCAATTGAGCTG
Found at i:32349789 original size:20 final size:20
Alignment explanation
Indices: 32349766--32349819 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
32349756 AGTTTTTCCC
*
32349766 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTCACATG
* ***
32349786 AGCTTAATTTAGCTCGTTTG
1 AGCTCAATTTAGCTCACATG
32349806 AGCTCAATTTAGCT
1 AGCTCAATTTAGCT
32349820 TACTTTAGCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (20 bp):
AGCTCAATTTAGCTCACATG
Found at i:32349801 original size:30 final size:30
Alignment explanation
Indices: 32349766--32349839 Score: 98
Period size: 30 Copynumber: 2.5 Consensus size: 30
32349756 AGTTTTTCCC
32349766 AGCTCGATTT-AGCTCACA-TGAGCTTAATTT
1 AGCTCG-TTTGAGCTCA-ATTGAGCTTAATTT
* *
32349796 AGCTCGTTTGAGCTCAATTTAGCTTACTTT
1 AGCTCGTTTGAGCTCAATTGAGCTTAATTT
32349826 AGCTCGTTTGAGCT
1 AGCTCGTTTGAGCT
32349840 TGGCTTAAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
29 4 0.10
30 36 0.90
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (30 bp):
AGCTCGTTTGAGCTCAATTGAGCTTAATTT
Found at i:32349829 original size:20 final size:20
Alignment explanation
Indices: 32349766--32349830 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
32349756 AGTTTTTCCC
* * * *
32349766 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTTACTTT
*
32349786 AGCTTAATTTAGC-T-CGTTT
1 AGCTCAATTTAGCTTAC-TTT
32349805 GAGCTCAATTTAGCTTACTTT
1 -AGCTCAATTTAGCTTACTTT
32349826 AGCTC
1 AGCTC
32349831 GTTTGAGCTT
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 28 0.80
21 4 0.11
22 1 0.03
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (20 bp):
AGCTCAATTTAGCTTACTTT
Found at i:32358800 original size:20 final size:20
Alignment explanation
Indices: 32358775--32358818 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
32358765 TCGTTTCCAG
*
32358775 CTCACTCGAGCTCAAGTCAA
1 CTCACTCAAGCTCAAGTCAA
*
32358795 CTCACTCAAGCTCAATTCAA
1 CTCACTCAAGCTCAAGTCAA
32358815 CTCA
1 CTCA
32358819 ATCTTAACCC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.32, C:0.36, G:0.09, T:0.23
Consensus pattern (20 bp):
CTCACTCAAGCTCAAGTCAA
Found at i:32360376 original size:12 final size:13
Alignment explanation
Indices: 32360324--32360377 Score: 53
Period size: 14 Copynumber: 4.3 Consensus size: 13
32360314 CAAAAAAAGA
32360324 AAAAAAAGAAGTG
1 AAAAAAAGAAGTG
*
32360337 AAAAAAATCG-AGTT
1 AAAAAAA--GAAGTG
32360351 AAAAAAAGAA--G
1 AAAAAAAGAAGTG
32360362 AAAAAAA-AAGTG
1 AAAAAAAGAAGTG
32360374 AAAA
1 AAAA
32360378 GTCTTGCGAG
Statistics
Matches: 34, Mismatches: 2, Indels: 11
0.72 0.04 0.23
Matches are distributed among these distances:
10 2 0.06
11 7 0.21
12 6 0.18
13 8 0.24
14 10 0.29
15 1 0.03
ACGTcount: A:0.72, C:0.02, G:0.17, T:0.09
Consensus pattern (13 bp):
AAAAAAAGAAGTG
Found at i:32361838 original size:19 final size:18
Alignment explanation
Indices: 32361802--32361841 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
32361792 TTTCCACTCG
*
32361802 TTTCTTTTTCAACTTCTC
1 TTTCTTTTTCAACATCTC
*
32361820 TTTCTTTTTCCACAATCTC
1 TTTCTTTTTCAAC-ATCTC
32361839 TTT
1 TTT
32361842 GTTTGTTGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.12, C:0.28, G:0.00, T:0.60
Consensus pattern (18 bp):
TTTCTTTTTCAACATCTC
Found at i:32362909 original size:14 final size:13
Alignment explanation
Indices: 32362878--32362908 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
32362868 ACTAGCTTTC
32362878 TTTTTCACGACTT
1 TTTTTCACGACTT
*
32362891 TTTTTCACGAATT
1 TTTTTCACGACTT
32362904 TTTTT
1 TTTTT
32362909 TTCAATTTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.16, C:0.16, G:0.06, T:0.61
Consensus pattern (13 bp):
TTTTTCACGACTT
Found at i:32362968 original size:10 final size:10
Alignment explanation
Indices: 32362966--32363003 Score: 58
Period size: 10 Copynumber: 3.7 Consensus size: 10
32362956 TTTTGAATTT
32362966 TTTTTTTGAA
1 TTTTTTTGAA
*
32362976 TTTTTTTGATT
1 TTTTTTTGA-A
32362987 TTTTTTTGAA
1 TTTTTTTGAA
32362997 TTTTTTT
1 TTTTTTT
32363004 CGAAGATGCT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
10 16 0.64
11 9 0.36
ACGTcount: A:0.13, C:0.00, G:0.08, T:0.79
Consensus pattern (10 bp):
TTTTTTTGAA
Found at i:32362968 original size:11 final size:11
Alignment explanation
Indices: 32362952--32363003 Score: 70
Period size: 11 Copynumber: 4.6 Consensus size: 11
32362942 GGAAACTAAT
32362952 TTTTTTTTGAA
1 TTTTTTTTGAA
32362963 TTTTTTTTTTGAA
1 --TTTTTTTTGAA
*
32362976 -TTTTTTTGAT
1 TTTTTTTTGAA
32362986 TTTTTTTTGAA
1 TTTTTTTTGAA
32362997 TTTTTTT
1 TTTTTTT
32363004 CGAAGATGCT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
10 9 0.25
11 16 0.44
13 11 0.31
ACGTcount: A:0.13, C:0.00, G:0.08, T:0.79
Consensus pattern (11 bp):
TTTTTTTTGAA
Found at i:32362969 original size:13 final size:12
Alignment explanation
Indices: 32362949--32363003 Score: 80
Period size: 13 Copynumber: 4.8 Consensus size: 12
32362939 AATGGAAACT
32362949 AATTTTTTTTTG
1 AATTTTTTTTTG
32362961 AATTTTTTTTTTG
1 AA-TTTTTTTTTG
32362974 AA--TTTTTTTG
1 AATTTTTTTTTG
32362984 -ATTTTTTTTTG
1 AATTTTTTTTTG
32362995 AATTTTTTT
1 AATTTTTTT
32363004 CGAAGATGCT
Statistics
Matches: 39, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
9 1 0.03
10 8 0.21
11 8 0.21
12 10 0.26
13 12 0.31
ACGTcount: A:0.16, C:0.00, G:0.07, T:0.76
Consensus pattern (12 bp):
AATTTTTTTTTG
Found at i:32362988 original size:21 final size:23
Alignment explanation
Indices: 32362953--32363003 Score: 88
Period size: 21 Copynumber: 2.3 Consensus size: 23
32362943 GAAACTAATT
32362953 TTTTTTTGAATTTTTTTTTTGAA
1 TTTTTTTGAATTTTTTTTTTGAA
32362976 TTTTTTTG-A-TTTTTTTTTGAA
1 TTTTTTTGAATTTTTTTTTTGAA
32362997 TTTTTTT
1 TTTTTTT
32363004 CGAAGATGCT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
21 19 0.68
22 1 0.04
23 8 0.29
ACGTcount: A:0.14, C:0.00, G:0.08, T:0.78
Consensus pattern (23 bp):
TTTTTTTGAATTTTTTTTTTGAA
Found at i:32371466 original size:20 final size:20
Alignment explanation
Indices: 32371420--32371466 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
32371410 AGCTCGTTTC
*
32371420 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* * *
32371440 CAACTCATTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
32371460 CAGCTCA
1 CAGCTCA
32371467 ATCTTAACCC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.30, C:0.34, G:0.13, T:0.23
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:32372935 original size:14 final size:14
Alignment explanation
Indices: 32372907--32372967 Score: 58
Period size: 14 Copynumber: 4.6 Consensus size: 14
32372897 TCAAAATCGA
32372907 AAAAAAAAGT--G-
1 AAAAAAAAGTGAGC
*
32372918 AAAAAAAATTGAGC
1 AAAAAAAAGTGAGC
**
32372932 AAAAAAAAGAAAG-
1 AAAAAAAAGTGAGC
32372945 AAAAAAAAGGTGAGC
1 AAAAAAAA-GTGAGC
32372960 AAAAAAAA
1 AAAAAAAA
32372968 ATCAAGTTAA
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
11 9 0.23
13 9 0.23
14 13 0.33
15 8 0.21
ACGTcount: A:0.74, C:0.03, G:0.16, T:0.07
Consensus pattern (14 bp):
AAAAAAAAGTGAGC
Found at i:32372937 original size:28 final size:29
Alignment explanation
Indices: 32372906--32372984 Score: 92
Period size: 28 Copynumber: 2.7 Consensus size: 29
32372896 ATCAAAATCG
*
32372906 AAAAAAAAAGTGAAAAAAAA-TTGAGCAA
1 AAAAAAAAAGTGAAAAAAAAGGTGAGCAA
32372934 AAAAAAGAAA--GAAAAAAAAGGTGAGCAA
1 AAAAAA-AAAGTGAAAAAAAAGGTGAGCAA
*
32372962 AAAAAAATCAAGTTAAAAAAAAG
1 AAAAAAA--AAGTGAAAAAAAAG
32372985 TGAAAAGTCT
Statistics
Matches: 43, Mismatches: 2, Indels: 9
0.80 0.04 0.17
Matches are distributed among these distances:
27 10 0.23
28 19 0.44
29 5 0.12
31 9 0.21
ACGTcount: A:0.72, C:0.04, G:0.15, T:0.09
Consensus pattern (29 bp):
AAAAAAAAAGTGAAAAAAAAGGTGAGCAA
Found at i:32375460 original size:10 final size:10
Alignment explanation
Indices: 32375444--32375501 Score: 64
Period size: 10 Copynumber: 5.7 Consensus size: 10
32375434 CAACTCCGAC
32375444 CAGCTCAATT
1 CAGCTCAATT
* *
32375454 GAGCTCATTT
1 CAGCTCAATT
32375464 CAGCTCAA-T
1 CAGCTCAATT
32375473 CGAGCTCAATT
1 C-AGCTCAATT
*
32375484 TAGCTGCAATT
1 CAGCT-CAATT
32375495 CAGCTCA
1 CAGCTCA
32375502 TTTATTTTAT
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
9 2 0.05
10 27 0.69
11 10 0.26
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.29
Consensus pattern (10 bp):
CAGCTCAATT
Found at i:32375467 original size:20 final size:20
Alignment explanation
Indices: 32375444--32375504 Score: 79
Period size: 20 Copynumber: 3.0 Consensus size: 20
32375434 CAACTCCGAC
32375444 CAGCTCAATTGAGCTCATTT
1 CAGCTCAATTGAGCTCATTT
*
32375464 CAGCTCAATCGAGCTCAATTT
1 CAGCTCAATTGAGCTC-ATTT
*
32375485 -AGCTGCAATTCAGCTCATTT
1 CAGCT-CAATTGAGCTCATTT
32375505 ATTTTATTGG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
20 23 0.64
21 13 0.36
ACGTcount: A:0.26, C:0.26, G:0.15, T:0.33
Consensus pattern (20 bp):
CAGCTCAATTGAGCTCATTT
Found at i:32377332 original size:20 final size:20
Alignment explanation
Indices: 32377286--32377332 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
32377276 AGCTCGTTTC
*
32377286 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* * *
32377306 CAACTCATTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
32377326 CAGCTCA
1 CAGCTCA
32377333 ATCTTAACCC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.30, C:0.34, G:0.13, T:0.23
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:32383697 original size:16 final size:15
Alignment explanation
Indices: 32383675--32383728 Score: 65
Period size: 16 Copynumber: 3.5 Consensus size: 15
32383665 GAATATTTAC
32383675 ATAAAAATTAAACTAA
1 ATAAAAATTAAA-TAA
*
32383691 GTAAAAA-TAAATAA
1 ATAAAAATTAAATAA
*
32383705 ATAAATAAATAAATAA
1 ATAAA-AATTAAATAA
32383721 ATAAAAAT
1 ATAAAAAT
32383729 AAAAATAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
14 7 0.21
15 8 0.24
16 18 0.55
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.24
Consensus pattern (15 bp):
ATAAAAATTAAATAA
Found at i:32383704 original size:4 final size:4
Alignment explanation
Indices: 32383695--32383725 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
32383685 AACTAAGTAA
32383695 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
32383726 AATAAAAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:32383734 original size:16 final size:16
Alignment explanation
Indices: 32383675--32383737 Score: 60
Period size: 16 Copynumber: 4.1 Consensus size: 16
32383665 GAATATTTAC
* *
32383675 ATAAAAATTAAACTAA
1 ATAAAAATAAAAATAA
*
32383691 GTAAAAAT--AAATAA
1 ATAAAAATAAAAATAA
*
32383705 ATAAATAA-ATAAATAA
1 ATAAA-AATAAAAATAA
32383721 ATAAAAATAAAAATAA
1 ATAAAAATAAAAATAA
32383737 A
1 A
32383738 ACTTTACAAC
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
14 9 0.23
15 4 0.10
16 26 0.67
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.22
Consensus pattern (16 bp):
ATAAAAATAAAAATAA
Found at i:32383738 original size:12 final size:12
Alignment explanation
Indices: 32383693--32383737 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
32383683 TAAACTAAGT
32383693 AAAAATAAATAA
1 AAAAATAAATAA
*
32383705 ATAAATAAATAA
1 AAAAATAAATAA
*
32383717 ATAAATAAA-AA
1 AAAAATAAATAA
32383728 TAAAAATAAA
1 -AAAAATAAA
32383738 ACTTTACAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
11 2 0.07
12 28 0.93
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (12 bp):
AAAAATAAATAA
Found at i:32386485 original size:21 final size:21
Alignment explanation
Indices: 32386440--32386502 Score: 83
Period size: 21 Copynumber: 3.0 Consensus size: 21
32386430 TTTGAACCAT
* *
32386440 TACCAATTCGTACCAAATACCA
1 TACCATTTCGTACC-AATTCCA
32386462 TACCATTTCGTACCAATTCCA
1 TACCATTTCGTACCAATTCCA
32386483 TACCATTTCG-AGCCAATTCC
1 TACCATTTCGTA-CCAATTCC
32386503 CAAATACCAA
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
20 1 0.03
21 24 0.63
22 13 0.34
ACGTcount: A:0.32, C:0.33, G:0.06, T:0.29
Consensus pattern (21 bp):
TACCATTTCGTACCAATTCCA
Found at i:32386841 original size:12 final size:12
Alignment explanation
Indices: 32386826--32386866 Score: 64
Period size: 12 Copynumber: 3.3 Consensus size: 12
32386816 AAAAAAAGTC
*
32386826 AAAATCGAAAAA
1 AAAATTGAAAAA
32386838 AAAATTGAAAAAA
1 AAAATTG-AAAAA
32386851 AAAATTGAAAAA
1 AAAATTGAAAAA
32386863 AAAA
1 AAAA
32386867 AATTGCATAC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
12 15 0.56
13 12 0.44
ACGTcount: A:0.78, C:0.02, G:0.07, T:0.12
Consensus pattern (12 bp):
AAAATTGAAAAA
Found at i:32386871 original size:14 final size:13
Alignment explanation
Indices: 32386833--32386867 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
32386823 GTCAAAATCG
32386833 AAAAAAAAATTGA
1 AAAAAAAAATTGA
32386846 AAAAAAAAATTGA
1 AAAAAAAAATTGA
32386859 AAAAAAAAA
1 AAAAAAAAA
32386868 ATTGCATACG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.83, C:0.00, G:0.06, T:0.11
Consensus pattern (13 bp):
AAAAAAAAATTGA
Found at i:32389115 original size:17 final size:17
Alignment explanation
Indices: 32389070--32389123 Score: 63
Period size: 17 Copynumber: 3.2 Consensus size: 17
32389060 AGAAAAGAGC
* *
32389070 GAAAATACAAAAGAAAA
1 GAAAATTCAAAAAAAAA
* *
32389087 GAAAAATGAAAAAAAAA
1 GAAAATTCAAAAAAAAA
*
32389104 GAAAATTCAAAAAAAGA
1 GAAAATTCAAAAAAAAA
32389121 GAA
1 GAA
32389124 TGAAAAGAGA
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.76, C:0.04, G:0.13, T:0.07
Consensus pattern (17 bp):
GAAAATTCAAAAAAAAA
Found at i:32393358 original size:21 final size:21
Alignment explanation
Indices: 32393313--32393375 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 21
32393303 TTTGAACCAT
* *
32393313 TACCAATTCGTACCAAATACCA
1 TACCATTTCGTACC-AATTCCA
*
32393335 TACCATTTCGTTCCAATTCCA
1 TACCATTTCGTACCAATTCCA
32393356 TACCATTTCG-AGCCAATTCC
1 TACCATTTCGTA-CCAATTCC
32393376 CAAATACCAA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
21 24 0.67
22 12 0.33
ACGTcount: A:0.30, C:0.33, G:0.06, T:0.30
Consensus pattern (21 bp):
TACCATTTCGTACCAATTCCA
Found at i:32396337 original size:18 final size:19
Alignment explanation
Indices: 32396292--32396340 Score: 57
Period size: 18 Copynumber: 2.6 Consensus size: 19
32396282 GAATATTTAC
*
32396292 ATAAAAATTAAACTAAGTAA
1 ATAAAAA-TAAACTAAATAA
32396312 A-AATAAATAAA-TAAATAA
1 ATAA-AAATAAACTAAATAA
32396330 ATAAAAATAAA
1 ATAAAAATAAA
32396341 AATAAAACTT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
18 14 0.54
19 8 0.31
20 4 0.15
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.22
Consensus pattern (19 bp):
ATAAAAATAAACTAAATAA
Found at i:32404403 original size:24 final size:24
Alignment explanation
Indices: 32404371--32404421 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
32404361 CAAAAACAAG
*
32404371 AACTGATACGAGTCATAAAGGCCC
1 AACTGATACGAGTCACAAAGGCCC
32404395 AACTGATACGAGTCACAAAGGCCC
1 AACTGATACGAGTCACAAAGGCCC
32404419 AAC
1 AAC
32404422 CCAAACTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.39, C:0.27, G:0.20, T:0.14
Consensus pattern (24 bp):
AACTGATACGAGTCACAAAGGCCC
Found at i:32413533 original size:296 final size:296
Alignment explanation
Indices: 32412989--32413595 Score: 1151
Period size: 296 Copynumber: 2.0 Consensus size: 296
32412979 ATGTCACCCC
*
32412989 CAAACTGATGGCCAAACTGAAGTAGTTAATCAGATCTTACGAACCTTGTTACGATCTGTTGTGGG
1 CAAA-TGAT-GCCAAACTAAAGTAGTTAATCAGATCTTACGAACCTTGTTACGATCTGTTGTGGG
32413054 AAAGAACATTAGAAATTGGGAAGAATGCCTACCATTTGTTAAATTTGCATATAATAGATCTATTC
64 AAAGAACATTAGAAATTGGGAAGAATGCCTACCATTTGTTAAATTTGCATATAATAGATCTATTC
* *
32413119 ATTCTACAACTGGTTATTCTTCATTTGAACTTGTTTATGGTTTTAGCCCACTAACAGTACTTGAT
129 ATTCTACAACTGGTTATTCTCCATTTGAACTTGTTTATGGTTTTAACCCACTAACAGTACTTGAT
32413184 CTTGCGCCATTACCACTTGAACACATTGTTAATTTAGATGGCGAATAGAAAGCTGAGTTGGTGAA
194 CTTGCGCCATTACCACTTGAACACATTGTTAATTTAGATGGCGAATAGAAAGCTGAGTTGGTGAA
32413249 ATCCTTACATAAGAAGGCTAAGCAACGAATAGCCAAAA
259 ATCCTTACATAAGAAGGCTAAGCAACGAATAGCCAAAA
32413287 CAAATGATGCCAAACTAAAGTAGTTAATCAGATCTTACGAACCTTGTTACGATCTGTTGTGGGAA
1 CAAATGATGCCAAACTAAAGTAGTTAATCAGATCTTACGAACCTTGTTACGATCTGTTGTGGGAA
32413352 AGAACATTAGAAATTGGGAAGAATGCCTACCATTTGTTAAATTTGCATATAATAGATCTATTCAT
66 AGAACATTAGAAATTGGGAAGAATGCCTACCATTTGTTAAATTTGCATATAATAGATCTATTCAT
32413417 TCTACAACTGGTTATTCTCCATTTGAACTTGTTTATGGTTTTAACCCACTAACAGTACTTGATCT
131 TCTACAACTGGTTATTCTCCATTTGAACTTGTTTATGGTTTTAACCCACTAACAGTACTTGATCT
32413482 TGCGCCATTACCACTTGAACACATTGTTAATTTAGATGGCGAATAGAAAGCTGAGTTGGTGAAAT
196 TGCGCCATTACCACTTGAACACATTGTTAATTTAGATGGCGAATAGAAAGCTGAGTTGGTGAAAT
* *
32413547 CCTTACATGAGAAGGCTAGGCAACGAATAGCCAAAA
261 CCTTACATAAGAAGGCTAAGCAACGAATAGCCAAAA
32413583 CAAATGATGCCAA
1 CAAATGATGCCAA
32413596 CACCAACAAA
Statistics
Matches: 304, Mismatches: 5, Indels: 2
0.98 0.02 0.01
Matches are distributed among these distances:
296 296 0.97
297 4 0.01
298 4 0.01
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Consensus pattern (296 bp):
CAAATGATGCCAAACTAAAGTAGTTAATCAGATCTTACGAACCTTGTTACGATCTGTTGTGGGAA
AGAACATTAGAAATTGGGAAGAATGCCTACCATTTGTTAAATTTGCATATAATAGATCTATTCAT
TCTACAACTGGTTATTCTCCATTTGAACTTGTTTATGGTTTTAACCCACTAACAGTACTTGATCT
TGCGCCATTACCACTTGAACACATTGTTAATTTAGATGGCGAATAGAAAGCTGAGTTGGTGAAAT
CCTTACATAAGAAGGCTAAGCAACGAATAGCCAAAA
Found at i:32420443 original size:19 final size:18
Alignment explanation
Indices: 32420407--32420446 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
32420397 TTTCCACTCG
*
32420407 TTTCTTTTTCAACTTCTC
1 TTTCTTTTTCAACATCTC
*
32420425 TTTCTTTTTCCACAATCTC
1 TTTCTTTTTCAAC-ATCTC
32420444 TTT
1 TTT
32420447 GTTTGTTGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.12, C:0.28, G:0.00, T:0.60
Consensus pattern (18 bp):
TTTCTTTTTCAACATCTC
Found at i:32421522 original size:14 final size:14
Alignment explanation
Indices: 32421503--32421529 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
32421493 ACTAGCTCTC
32421503 TTTTTTTTCACAAT
1 TTTTTTTTCACAAT
32421517 TTTTTTTTCACAA
1 TTTTTTTTCACAA
32421530 CTTGATATCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.15, G:0.00, T:0.63
Consensus pattern (14 bp):
TTTTTTTTCACAAT
Found at i:32421586 original size:12 final size:12
Alignment explanation
Indices: 32421569--32421609 Score: 50
Period size: 11 Copynumber: 3.6 Consensus size: 12
32421559 GAAACTAGTT
32421569 TTTTTTTTC-AA
1 TTTTTTTTCGAA
*
32421580 ATTTTTTT-GAA
1 TTTTTTTTCGAA
*
32421591 TTTTTTTTCGAG
1 TTTTTTTTCGAA
32421603 TTTTTTT
1 TTTTTTT
32421610 CGAGAAACTA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
11 16 0.64
12 9 0.36
ACGTcount: A:0.15, C:0.05, G:0.07, T:0.73
Consensus pattern (12 bp):
TTTTTTTTCGAA
Found at i:32425910 original size:21 final size:23
Alignment explanation
Indices: 32425865--32425911 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
32425855 TCACCTGCAA
* *
32425865 TAAACACATTAAAATGAGTTTAT
1 TAAACACATTAAAATCAGCTTAT
32425888 TAAACACATTAAAA-CA-CTTAT
1 TAAACACATTAAAATCAGCTTAT
32425909 TAA
1 TAA
32425912 TCATAACACA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 7 0.32
22 1 0.05
23 14 0.64
ACGTcount: A:0.51, C:0.13, G:0.04, T:0.32
Consensus pattern (23 bp):
TAAACACATTAAAATCAGCTTAT
Found at i:32431317 original size:10 final size:11
Alignment explanation
Indices: 32431301--32431333 Score: 50
Period size: 10 Copynumber: 3.0 Consensus size: 11
32431291 GGAAACCAAT
32431301 TTTTTTTTGAA
1 TTTTTTTTGAA
32431312 TTTTTTTTTG-A
1 -TTTTTTTTGAA
32431323 TTTTTTTTGAA
1 TTTTTTTTGAA
32431334 GAAACTACTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 9 0.45
11 2 0.10
12 9 0.45
ACGTcount: A:0.15, C:0.00, G:0.09, T:0.76
Consensus pattern (11 bp):
TTTTTTTTGAA
Found at i:32431317 original size:11 final size:12
Alignment explanation
Indices: 32431298--32431330 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
32431288 AAAGGAAACC
32431298 AATTTTTTTTTG
1 AATTTTTTTTTG
32431310 AATTTTTTTTTG
1 AATTTTTTTTTG
32431322 -ATTTTTTTT
1 AATTTTTTTT
32431331 GAAGAAACTA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 9 0.43
12 12 0.57
ACGTcount: A:0.15, C:0.00, G:0.06, T:0.79
Consensus pattern (12 bp):
AATTTTTTTTTG
Found at i:32432364 original size:21 final size:23
Alignment explanation
Indices: 32432319--32432365 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
32432309 TCACCTGCAA
* *
32432319 TAAACACATTAAAATGAGTTTAT
1 TAAACACATTAAAATCAGCTTAT
32432342 TAAACACATTAAAA-CA-CTTAT
1 TAAACACATTAAAATCAGCTTAT
32432363 TAA
1 TAA
32432366 TCATAACACA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 7 0.32
22 1 0.05
23 14 0.64
ACGTcount: A:0.51, C:0.13, G:0.04, T:0.32
Consensus pattern (23 bp):
TAAACACATTAAAATCAGCTTAT
Found at i:32433809 original size:11 final size:12
Alignment explanation
Indices: 32433756--32433812 Score: 62
Period size: 12 Copynumber: 4.5 Consensus size: 12
32433746 TTGGAGTAAC
32433756 AAAAAAAA-TCA
1 AAAAAAAATTCA
32433767 AAAAAAAATTCGA
1 AAAAAAAATTC-A
*
32433780 AAAAAAATTGATTGA
1 AAAAAAA---ATTCA
32433795 AAAAAAAATTCA
1 AAAAAAAATTCA
32433807 AAAAAA
1 AAAAAA
32433813 GTGAAAAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
11 8 0.21
12 12 0.31
13 8 0.21
15 8 0.21
16 3 0.08
ACGTcount: A:0.74, C:0.05, G:0.05, T:0.16
Consensus pattern (12 bp):
AAAAAAAATTCA
Found at i:32448804 original size:40 final size:40
Alignment explanation
Indices: 32448721--32448983 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
32448711 TTGAATGCTG
* * * * * *
32448721 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
32448761 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
32448801 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
32448841 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
32448881 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
32448921 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
32448960 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
32448984 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:32449003 original size:79 final size:80
Alignment explanation
Indices: 32448760--32449018 Score: 238
Period size: 80 Copynumber: 3.3 Consensus size: 80
32448750 AAGTGAATAT
* * * * * * *
32448760 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAG
** * *
32448824 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
32448840 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
** ** *
32448905 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * * *
32448920 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
* *
32448984 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
32448999 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
32449019 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
CGAACGAGGAGCTAA
Found at i:32456759 original size:40 final size:40
Alignment explanation
Indices: 32456676--32456938 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
32456666 TTGAATGCTG
* * * * * *
32456676 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
32456716 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
32456756 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
32456796 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
32456836 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
32456876 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
32456915 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
32456939 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:32456958 original size:79 final size:80
Alignment explanation
Indices: 32456715--32456973 Score: 238
Period size: 80 Copynumber: 3.3 Consensus size: 80
32456705 AAGTGAATAT
* * * * * * *
32456715 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAG
** * *
32456779 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
32456795 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
** ** *
32456860 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * * *
32456875 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
* *
32456939 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
32456954 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
32456974 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
CGAACGAGGAGCTAA
Found at i:32461125 original size:13 final size:12
Alignment explanation
Indices: 32461106--32461139 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
32461096 ACACCTTGAT
*
32461106 TTTTTTTTTGAA
1 TTTTTTTTCGAA
32461118 TTTGTTTTTCGAA
1 TTT-TTTTTCGAA
32461131 TTTTTTTTC
1 TTTTTTTTC
32461140 ACAATAACTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.12, C:0.06, G:0.09, T:0.74
Consensus pattern (12 bp):
TTTTTTTTCGAA
Found at i:32486554 original size:14 final size:16
Alignment explanation
Indices: 32486535--32486567 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
32486525 CTGTTTTCGA
32486535 TTTCTTT-CTT-TACT
1 TTTCTTTGCTTATACT
32486549 TTTCTTTGCTTATACT
1 TTTCTTTGCTTATACT
32486565 TTT
1 TTT
32486568 GCCAATTTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.41
15 3 0.18
16 7 0.41
ACGTcount: A:0.09, C:0.18, G:0.03, T:0.70
Consensus pattern (16 bp):
TTTCTTTGCTTATACT
Found at i:32493657 original size:12 final size:13
Alignment explanation
Indices: 32493635--32493663 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
32493625 AAGTTTTATT
32493635 TTTATTTTATTTA
1 TTTATTTTATTTA
32493648 TTTA-TTTATTTA
1 TTTATTTTATTTA
32493660 TTTA
1 TTTA
32493664 CTTAGTTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTATTTTATTTA
Found at i:32506739 original size:20 final size:20
Alignment explanation
Indices: 32506714--32506760 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
32506704 AAGCTGACTT
*
32506714 TAGCTCAATTTCAACTCCCA
1 TAGCTCAATTTCAACTCCAA
*
32506734 TAGCTC-ATTTCAGCTCCAA
1 TAGCTCAATTTCAACTCCAA
32506753 TCAGCTCA
1 T-AGCTCA
32506761 CTTGAGCTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 12 0.52
20 11 0.48
ACGTcount: A:0.28, C:0.34, G:0.09, T:0.30
Consensus pattern (20 bp):
TAGCTCAATTTCAACTCCAA
Found at i:32524979 original size:27 final size:27
Alignment explanation
Indices: 32524949--32525021 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
32524939 TCTCTCTCGC
*
32524949 TTTCCTTTTCGCCTTTTTCA-TTTTCAT
1 TTTCCTTTTCTCCTTTTTCACTTTT-AT
* * *
32524976 TTTCATTTTTTTCTTTTTCACTTTTAT
1 TTTCCTTTTCTCCTTTTTCACTTTTAT
* *
32525003 TTTTCTCTTCTCCTTTTTC
1 TTTCCTTTTCTCCTTTTTC
32525022 TAACAACAGA
Statistics
Matches: 36, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
27 32 0.89
28 4 0.11
ACGTcount: A:0.07, C:0.23, G:0.01, T:0.68
Consensus pattern (27 bp):
TTTCCTTTTCTCCTTTTTCACTTTTAT
Found at i:32524986 original size:21 final size:21
Alignment explanation
Indices: 32524962--32525006 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
32524952 CCTTTTCGCC
32524962 TTTTTCATTTTCA-TTTTCATT
1 TTTTTCATTTTCACTTTT-ATT
*
32524983 TTTTTCTTTTTCACTTTTATT
1 TTTTTCATTTTCACTTTTATT
32525004 TTT
1 TTT
32525007 CTCTTCTCCT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 18 0.82
22 4 0.18
ACGTcount: A:0.11, C:0.13, G:0.00, T:0.76
Consensus pattern (21 bp):
TTTTTCATTTTCACTTTTATT
Found at i:32525011 original size:21 final size:21
Alignment explanation
Indices: 32524969--32525011 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
32524959 GCCTTTTTCA
*
32524969 TTTTCATTTTCATTTTTTTCT
1 TTTTCATTTTCATTTTTCTCT
32524990 TTTTCACTTTT-ATTTTTCTCT
1 TTTTCA-TTTTCATTTTTCTCT
32525011 T
1 T
32525012 CTCCTTTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.09, C:0.16, G:0.00, T:0.74
Consensus pattern (21 bp):
TTTTCATTTTCATTTTTCTCT
Found at i:32525821 original size:12 final size:12
Alignment explanation
Indices: 32525804--32525828 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
32525794 AAAAGCTGAT
32525804 TTCAATGTGTAA
1 TTCAATGTGTAA
32525816 TTCAATGTGTAA
1 TTCAATGTGTAA
32525828 T
1 T
32525829 GTGTATAAGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (12 bp):
TTCAATGTGTAA
Found at i:32528356 original size:20 final size:21
Alignment explanation
Indices: 32528323--32528386 Score: 62
Period size: 20 Copynumber: 3.2 Consensus size: 21
32528313 CAGCTCCTTT
* *
32528323 AGCTCGTTTCAGCTCCAA-TC
1 AGCTCATTTGAGCTCCAATTC
32528343 AGCTCATTTGAGCT-CAATTC
1 AGCTCATTTGAGCTCCAATTC
* * *
32528363 AGCTCCTTCGAGCT-CAATTT
1 AGCTCATTTGAGCTCCAATTC
32528383 AGCT
1 AGCT
32528387 TTCTTTCAGC
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
19 3 0.08
20 35 0.92
ACGTcount: A:0.22, C:0.30, G:0.16, T:0.33
Consensus pattern (21 bp):
AGCTCATTTGAGCTCCAATTC
Found at i:32528364 original size:30 final size:29
Alignment explanation
Indices: 32528313--32528386 Score: 78
Period size: 30 Copynumber: 2.5 Consensus size: 29
32528303 AGTTCAATTC
* **
32528313 CAGCTCCTTTAGCTCGTTTCAGCTCCAAT
1 CAGCTCATTTAGCTCAATTCAGCTCCAAT
*
32528342 CAGCTCATTTGAGCTCAATTCAGCTCC-TT
1 CAGCTCATTT-AGCTCAATTCAGCTCCAAT
32528371 CGAGCTCAATTTAGCT
1 C-AGCTC-ATTTAGCT
32528387 TTCTTTCAGC
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
29 11 0.29
30 23 0.61
31 4 0.11
ACGTcount: A:0.20, C:0.31, G:0.15, T:0.34
Consensus pattern (29 bp):
CAGCTCATTTAGCTCAATTCAGCTCCAAT
Found at i:32543592 original size:12 final size:12
Alignment explanation
Indices: 32543577--32543616 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
32543567 CATGTTCATG
32543577 TTCATTTTCTTT
1 TTCATTTTCTTT
*
32543589 TTCAATTTCTTT
1 TTCATTTTCTTT
32543601 TT-ATTTTTCTTT
1 TTCA-TTTTCTTT
32543613 TTCA
1 TTCA
32543617 CATGCTGTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
11 1 0.04
12 22 0.92
13 1 0.04
ACGTcount: A:0.12, C:0.15, G:0.00, T:0.72
Consensus pattern (12 bp):
TTCATTTTCTTT
Found at i:32544101 original size:15 final size:15
Alignment explanation
Indices: 32544081--32544116 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
32544071 CAAATATTGG
32544081 AATTCTGATTCAGAA
1 AATTCTGATTCAGAA
32544096 AATTCTGATTCAGAA
1 AATTCTGATTCAGAA
32544111 AATTCT
1 AATTCT
32544117 TCTCGAGACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.39, C:0.14, G:0.11, T:0.36
Consensus pattern (15 bp):
AATTCTGATTCAGAA
Found at i:32578678 original size:42 final size:42
Alignment explanation
Indices: 32578619--32578701 Score: 157
Period size: 42 Copynumber: 2.0 Consensus size: 42
32578609 AAATTCAAAG
32578619 GGATAAGAACAAGAGTTCAAATGTTTGAATTTCAAACGTTTT
1 GGATAAGAACAAGAGTTCAAATGTTTGAATTTCAAACGTTTT
*
32578661 GGATAAGAACAAGAGTTCAAATGTTTGAATTTCAAATGTTT
1 GGATAAGAACAAGAGTTCAAATGTTTGAATTTCAAACGTTT
32578702 CACACATATT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.39, C:0.08, G:0.19, T:0.34
Consensus pattern (42 bp):
GGATAAGAACAAGAGTTCAAATGTTTGAATTTCAAACGTTTT
Found at i:32583500 original size:37 final size:37
Alignment explanation
Indices: 32583444--32583522 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
32583434 CCGAGCTCTA
* * *
32583444 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
32583481 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
32583518 AAGAC
1 AAGAC
32583523 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:32589113 original size:47 final size:47
Alignment explanation
Indices: 32589021--32589886 Score: 1533
Period size: 47 Copynumber: 18.5 Consensus size: 47
32589011 GTGTGTATAC
*
32589021 GTGAAAGTGTATATA-GTGATAAGG--TAATGGCCGATGTGATAAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
32589065 GTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
32589112 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAGGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
32589159 GTGAAAGTGTATAAATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
32589206 GTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
32589253 GTGAAAGTGTATATATGTGATTAGGCCTAATGGTCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
32589300 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
32589347 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATAAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
32589394 GTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
32589441 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
32589488 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
32589535 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
32589582 GTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
32589629 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
32589676 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
32589723 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG-GATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
32589769 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * * * * *
32589816 GTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
32589863 GTGAAAGTGTATAAATGTGATAAG
1 GTGAAAGTGTATATATGTGATAAG
32589887 TCCCGAAGGG
Statistics
Matches: 787, Mismatches: 31, Indels: 5
0.96 0.04 0.01
Matches are distributed among these distances:
44 15 0.02
45 9 0.01
46 46 0.06
47 717 0.91
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:32590061 original size:37 final size:37
Alignment explanation
Indices: 32590005--32590083 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
32589995 CCGAGCTCTA
* * *
32590005 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
32590042 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
32590079 AAGAC
1 AAGAC
32590084 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:32605715 original size:47 final size:47
Alignment explanation
Indices: 32605618--32606482 Score: 1533
Period size: 47 Copynumber: 18.5 Consensus size: 47
32605608 GTGTGTATAC
32605618 GTGAAAGTGTATATATGTGAT-AGG--TAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
32605662 GTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
32605709 GTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
32605756 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
32605803 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
32605850 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
32605897 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
32605944 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
32605991 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA--TGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
32606036 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATAAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
32606083 GTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
32606130 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
32606177 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
32606224 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATAAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
32606271 GTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * *
32606318 GTGAAAGTGTGTATATGTGATAAGCCCTAATGGTCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
32606365 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * * * * * *
32606412 GTAAAAGTGTATATATGTGACAGGGCCGACTGGCCAACGTGATGGAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
32606459 GTGAAAGTGTATAAATGTGATAAG
1 GTGAAAGTGTATATATGTGATAAG
32606483 TCCCGAAGGG
Statistics
Matches: 788, Mismatches: 28, Indels: 7
0.96 0.03 0.01
Matches are distributed among these distances:
44 21 0.03
45 48 0.06
47 719 0.91
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:32606657 original size:37 final size:37
Alignment explanation
Indices: 32606601--32606679 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
32606591 CCGAGCTCTA
* * *
32606601 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
32606638 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
32606675 AAGAC
1 AAGAC
32606680 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:32615528 original size:13 final size:13
Alignment explanation
Indices: 32615510--32615546 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
32615500 GTAAAAAATC
32615510 AAAAAAAATTTGA
1 AAAAAAAATTTGA
32615523 AAAAAAAA-TT-A
1 AAAAAAAATTTGA
32615534 AAAAAAAAGTTTG
1 AAAAAAAA-TTTG
32615547 TATTTAATTC
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
11 9 0.43
12 2 0.10
13 10 0.48
ACGTcount: A:0.70, C:0.00, G:0.08, T:0.22
Consensus pattern (13 bp):
AAAAAAAATTTGA
Found at i:32616547 original size:15 final size:16
Alignment explanation
Indices: 32616527--32616558 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
32616517 AGCATGTGAA
32616527 AAAGAAAAAGAA-ATG
1 AAAGAAAAAGAAGATG
32616542 AAAGAAAAAGAAGATG
1 AAAGAAAAAGAAGATG
32616558 A
1 A
32616559 GTGTGAGATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.72, C:0.00, G:0.22, T:0.06
Consensus pattern (16 bp):
AAAGAAAAAGAAGATG
Found at i:32616661 original size:54 final size:50
Alignment explanation
Indices: 32616544--32616653 Score: 136
Period size: 48 Copynumber: 2.2 Consensus size: 50
32616534 AAGAAATGAA
* * * * *
32616544 AGAA-AAAGAAGATGAGTGTGAGATAGAAAAGAAAATTGAAAATGAGATTG
1 AGAATAAAGAA-ACGAGTGTGAAAAAGAAAAGAAAACTGAAAAAGAGATTG
32616594 AGAAT-AA-AAACGAGTGTGAAAAAGAAAAGAAAACTGAAAAAGAGATTG
1 AGAATAAAGAAACGAGTGTGAAAAAGAAAAGAAAACTGAAAAAGAGATTG
*
32616642 AGAATGAAGAAA
1 AGAATAAAGAAA
32616654 GAAACGAGAG
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
48 39 0.75
49 4 0.08
50 9 0.17
ACGTcount: A:0.58, C:0.02, G:0.25, T:0.15
Consensus pattern (50 bp):
AGAATAAAGAAACGAGTGTGAAAAAGAAAAGAAAACTGAAAAAGAGATTG
Found at i:32619340 original size:47 final size:47
Alignment explanation
Indices: 32619288--32619680 Score: 558
Period size: 47 Copynumber: 8.3 Consensus size: 47
32619278 TGTACAAGTA
* * *
32619288 TATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGAA-AGTA
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG
*
32619335 TATATATGCGTGATAAGGCCGAATGACCAATGTGATGAATGTGAACATG
1 TATATAT--GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* * *
32619384 TGTATGTGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
32619431 TGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
32619478 TGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
32619525 TGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
32619572 CATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG
* *
32619619 TATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGAA-GTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGT-GAACATG
*
32619666 TATAAATGTGATAAG
1 TATATATGTGATAAG
32619681 TCCCGAAGGG
Statistics
Matches: 323, Mismatches: 18, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
46 1 0.00
47 279 0.86
48 3 0.01
49 39 0.12
50 1 0.00
ACGTcount: A:0.32, C:0.10, G:0.31, T:0.27
Consensus pattern (47 bp):
TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
Found at i:32619558 original size:22 final size:22
Alignment explanation
Indices: 32619531--32619652 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
32619521 CATGTGTATG
32619531 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
32619553 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
32619578 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
32619600 TGTGATGAATG-TGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
32619625 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
32619647 TGTGAT
1 TGTGAT
32619653 GGATGTGGAA
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 21 0.30
23 17 0.24
24 17 0.24
25 15 0.21
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:32623560 original size:18 final size:17
Alignment explanation
Indices: 32623534--32623588 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 17
32623524 AAGAGTCCTT
32623534 GGAAAAAGAAAATGAAAA
1 GGAAAAAGAAAA-GAAAA
*
32623552 GGAATAAGAAAA-AAAA
1 GGAAAAAGAAAAGAAAA
32623568 GTTGAAAAAGAAAAAGAAAA
1 G--GAAAAAG-AAAAGAAAA
32623588 G
1 G
32623589 AATAATGAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
16 5 0.16
18 17 0.55
19 4 0.13
20 5 0.16
ACGTcount: A:0.71, C:0.00, G:0.22, T:0.07
Consensus pattern (17 bp):
GGAAAAAGAAAAGAAAA
Found at i:32623562 original size:24 final size:23
Alignment explanation
Indices: 32623535--32623613 Score: 65
Period size: 24 Copynumber: 3.3 Consensus size: 23
32623525 AGAGTCCTTG
32623535 GAAAAAGAAAATGAAAAGGAATAA
1 GAAAAAGAAAATGAAAAGGAA-AA
* *
32623559 GAAAAA-AAAGTTGAAAAAGAAAA
1 GAAAAAGAAA-ATGAAAAGGAAAA
32623582 -AGAAAAGAATAATGAGAAAAGGAAAA
1 GA-AAAAGAA-AAT--GAAAAGGAAAA
32623608 -AAAAAG
1 GAAAAAG
32623614 TGAGAAAGTG
Statistics
Matches: 45, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
22 1 0.02
23 9 0.20
24 18 0.40
25 6 0.13
26 11 0.24
ACGTcount: A:0.72, C:0.00, G:0.20, T:0.08
Consensus pattern (23 bp):
GAAAAAGAAAATGAAAAGGAAAA
Found at i:32623601 original size:19 final size:20
Alignment explanation
Indices: 32623576--32623620 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
32623566 AAGTTGAAAA
* *
32623576 AGAAAAAGAAAAGAATAA-TG
1 AGAAAAGGAAAA-AAAAAGTG
32623596 AGAAAAGGAAAAAAAAAGTG
1 AGAAAAGGAAAAAAAAAGTG
32623616 AGAAA
1 AGAAA
32623621 GTGGAGGTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 4 0.18
20 18 0.82
ACGTcount: A:0.71, C:0.00, G:0.22, T:0.07
Consensus pattern (20 bp):
AGAAAAGGAAAAAAAAAGTG
Found at i:32626786 original size:44 final size:47
Alignment explanation
Indices: 32626736--32626839 Score: 153
Period size: 44 Copynumber: 2.3 Consensus size: 47
32626726 AAGCTAAGTC
* *
32626736 ATTTAATTTGTCTAAATTATTACAGCAATTTAAG-TGT-TTAAGA-T-
1 ATTTAATTTGTCTAAATTATTACAACAAATTAAGTTGTCTTAA-ACTA
32626780 ATTTAATTTGTCTAAATTATTACAACAAATTAAGTTGTCTTAAACTA
1 ATTTAATTTGTCTAAATTATTACAACAAATTAAGTTGTCTTAAACTA
32626827 ATTTAATTTGTCT
1 ATTTAATTTGTCT
32626840 TGTTTGTAGC
Statistics
Matches: 54, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
44 32 0.59
45 4 0.07
46 5 0.09
47 13 0.24
ACGTcount: A:0.37, C:0.09, G:0.09, T:0.46
Consensus pattern (47 bp):
ATTTAATTTGTCTAAATTATTACAACAAATTAAGTTGTCTTAAACTA
Found at i:32634696 original size:20 final size:20
Alignment explanation
Indices: 32634673--32634711 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
32634663 TTGAGTTGAA
32634673 TTGAGCTCGAATGAGCTGAC
1 TTGAGCTCGAATGAGCTGAC
*
32634693 TTGAGCTCGAGTGAGCTGA
1 TTGAGCTCGAATGAGCTGA
32634712 ACTAAGTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.23, C:0.18, G:0.33, T:0.26
Consensus pattern (20 bp):
TTGAGCTCGAATGAGCTGAC
Found at i:32638736 original size:23 final size:23
Alignment explanation
Indices: 32638708--32638753 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
32638698 CTAGATAAGT
32638708 CTACTTGAGTCTAAAATGAAATA
1 CTACTTGAGTCTAAAATGAAATA
32638731 CTACTTGAGTCTAAAATGAAATA
1 CTACTTGAGTCTAAAATGAAATA
32638754 AGAGAGTTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.43, C:0.13, G:0.13, T:0.30
Consensus pattern (23 bp):
CTACTTGAGTCTAAAATGAAATA
Found at i:32640564 original size:19 final size:20
Alignment explanation
Indices: 32640540--32640584 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
32640530 TTGAGAGTAT
*
32640540 AAAAAAGTGTGAATA-TTAA
1 AAAAAAGTGAGAATATTTAA
* *
32640559 AAAAAATTGAGTATATTTAA
1 AAAAAAGTGAGAATATTTAA
32640579 AAAAAA
1 AAAAAA
32640585 AGGTGAAGTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 12 0.55
20 10 0.45
ACGTcount: A:0.62, C:0.00, G:0.11, T:0.27
Consensus pattern (20 bp):
AAAAAAGTGAGAATATTTAA
Found at i:32657323 original size:12 final size:12
Alignment explanation
Indices: 32657282--32657322 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
32657272 CTTCTTCTTC
32657282 TTCTTTTTC-AT
1 TTCTTTTTCAAT
32657293 TTC--TTTCAAT
1 TTCTTTTTCAAT
32657303 TTCTTTTTCAAT
1 TTCTTTTTCAAT
32657315 GTTCTTTT
1 -TTCTTTT
32657323 CTCGCTCACG
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
9 4 0.15
10 5 0.19
11 3 0.12
12 7 0.27
13 7 0.27
ACGTcount: A:0.12, C:0.17, G:0.02, T:0.68
Consensus pattern (12 bp):
TTCTTTTTCAAT
Found at i:32668941 original size:15 final size:14
Alignment explanation
Indices: 32668920--32668953 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
32668910 ACACCTTGAA
*
32668920 TTTTTTTTCGAATT
1 TTTTTTTTCCAATT
*
32668934 TGTTTTTTCCAATT
1 TTTTTTTTCCAATT
32668948 TTTTTT
1 TTTTTT
32668954 CACAATGACT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.12, C:0.09, G:0.06, T:0.74
Consensus pattern (14 bp):
TTTTTTTTCCAATT
Found at i:32673217 original size:20 final size:20
Alignment explanation
Indices: 32673184--32673228 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
32673174 TAAATTCACA
32673184 TAATTAAAACAAGACAC-AAT
1 TAATTAAAACAAGAC-CTAAT
**
32673204 TAATTAAATTAAGACCTAAT
1 TAATTAAAACAAGACCTAAT
32673224 TAATT
1 TAATT
32673229 CGGTTAGGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 1 0.05
20 21 0.95
ACGTcount: A:0.53, C:0.11, G:0.04, T:0.31
Consensus pattern (20 bp):
TAATTAAAACAAGACCTAAT
Found at i:32679350 original size:27 final size:26
Alignment explanation
Indices: 32679291--32679350 Score: 61
Period size: 27 Copynumber: 2.3 Consensus size: 26
32679281 GTTATTTCCT
*
32679291 CTTCGTTT-TCTTTTTTATTTATTTA
1 CTTCTTTTATCTTTTTTATTTATTTA
* *
32679316 CTTGTTTTATCTTATTTTATTT-TTTT
1 CTTCTTTTATCTT-TTTTATTTATTTA
32679342 CTTTCTTTT
1 C-TTCTTTT
32679351 GCAAATCTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
25 6 0.21
26 8 0.29
27 14 0.50
ACGTcount: A:0.10, C:0.12, G:0.03, T:0.75
Consensus pattern (26 bp):
CTTCTTTTATCTTTTTTATTTATTTA
Found at i:32680223 original size:18 final size:20
Alignment explanation
Indices: 32680200--32680242 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
32680190 CATATACATG
32680200 CATACATTTT-A-TAATACA
1 CATACATTTTAATTAATACA
32680218 CATACATTTTAATTAATACA
1 CATACATTTTAATTAATACA
32680238 CATAC
1 CATAC
32680243 TTATACATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 10 0.43
19 1 0.04
20 12 0.52
ACGTcount: A:0.44, C:0.19, G:0.00, T:0.37
Consensus pattern (20 bp):
CATACATTTTAATTAATACA
Found at i:32687173 original size:50 final size:50
Alignment explanation
Indices: 32687114--32687856 Score: 297
Period size: 50 Copynumber: 14.9 Consensus size: 50
32687104 TAAAGTTACG
* * *
32687114 ACGGTGAATCTTGCTTCCCTGACATTGCAATTAAAAAGATTGAAGCCGCA
1 ACGGCGAATCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACA
* * * ** ** ** *
32687164 ACGGCGAATCTTACTTTCCTGGCGA-TGCAGTGGATTAGATTGAAGTTACG
1 ACGGCGAATCTTACTTCCCTGAC-ATTGCAATTAAAAAGATTGAAGCCACA
* * ** * *
32687214 ATGGCGAATTTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCGCA
1 ACGGCGAATCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACA
* * * * * ** ** *
32687264 ACAGCAAATCTTACTT-TCTAGGCGA-TGCAGTGGACCAGATTGAAGCTACA
1 ACGGCGAATCTTACTTCCCT-GAC-ATTGCAATTAAAAAGATTGAAGCCACA
* * * * *
32687314 ACGGTGAATCTT-GTTTCCTCGACATTGCAATTTAAAAGATTGAAGCCGCA
1 ACGGCGAATCTTACTTCCCT-GACATTGCAATTAAAAAGATTGAAGCCACA
* * * * * ** ** *
32687364 ATGGCAAATCTTACTTCCCTGGCAGTGCAGTGGAGCAGATTGAAGCCATA
1 ACGGCGAATCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACA
* * * * *
32687414 ACAGTGAATCTT-GTCTCCCCGACATTGCAATTAAAAAGATTGAAGCCGCA
1 ACGGCGAATCTTACT-TCCCTGACATTGCAATTAAAAAGATTGAAGCCACA
* * ** * ** * * *
32687464 ACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAATAGATTAAAGCTACA
1 ACGGCGAATCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACA
* *** * * *
32687514 ATGAAAAATCTTA-TT-CCTCGACATCGCAGTT--AAAGATTAAAGCCACA
1 ACGGCGAATCTTACTTCCCT-GACATTGCAATTAAAAAGATTGAAGCCACA
* * * * ** ** * *
32687561 ACAGCAAATCTTACTTCCCTGGC--GGCACAGTGGAGCAGATTGAAGCTACG
1 ACGGCGAATCTTACTTCCCTGACATTGCA-A-TTAAAAAGATTGAAGCCACA
* * * *
32687611 ACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCGCA
1 ACGGCGAATCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACA
* * * * * ** ** **
32687661 ACGGTGAATCTTACTTTCCTGGCGA-CGCAGTGGATCAGATTGAAGGTACA
1 ACGGCGAATCTTACTTCCCTGAC-ATTGCAATTAAAAAGATTGAAGCCACA
* * ** *
32687711 ACGGTGAATCTT-GTTCCCCAACATTGCAATTTAAAAGATTGAAGCCACA
1 ACGGCGAATCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACA
* ** * * * ** * *
32687760 ACAGCGAATCTTACTTCCCTGGTAGTGCAGTGAAGCAGATTAAAGCTACA
1 ACGGCGAATCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACA
** * * * *
32687810 ATAGCGAATCTTGCTTCCCTGACATCGCAGTTTAAAAAGTTTGAAGC
1 ACGGCGAATCTTACTTCCCTGACATTGCA-ATTAAAAAGATTGAAGC
32687857 TATAAATCAC
Statistics
Matches: 479, Mismatches: 192, Indels: 43
0.67 0.27 0.06
Matches are distributed among these distances:
46 3 0.01
47 23 0.05
48 9 0.02
49 50 0.10
50 370 0.77
51 21 0.04
52 3 0.01
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.26
Consensus pattern (50 bp):
ACGGCGAATCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACA
Found at i:32687262 original size:100 final size:100
Alignment explanation
Indices: 32687089--32687856 Score: 848
Period size: 100 Copynumber: 7.7 Consensus size: 100
32687079 TCCTTGGCAG
* * * * *
32687089 TGCAGTGGAGCAGATTAAAGTTACGACGGTGAATCTTGCTTCCCTGACATTGCAATTAAAAAGAT
1 TGCAGTGGAGCAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGAT
*
32687154 TGAAGCCGCAACGGCGAATCTTACTTTCCTGGCGA
66 TGAAGCCGCAACGGCGAATCTTACTTCCCTGGCGA
** * * * * *
32687189 TGCAGTGGATTAGATTGAAGTTACGATGGCGAATTTTGTTTCCCCGACATTGCAATTAAAAAGAT
1 TGCAGTGGAGCAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGAT
* * *
32687254 TGAAGCCGCAACAGCAAATCTTACTT-TCTAGGCGA
66 TGAAGCCGCAACGGCGAATCTTACTTCCCT-GGCGA
* * *
32687289 TGCAGTGGACCAGATTGAAGCTACAACGGTGAATCTTGTTTCCTCGACATTGCAATTTAAAAGAT
1 TGCAGTGGAGCAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGAT
* *
32687354 TGAAGCCGCAATGGCAAATCTTACTTCCCTGGC-A
66 TGAAGCCGCAACGGCGAATCTTACTTCCCTGGCGA
* * * *
32687388 GTGCAGTGGAGCAGATTGAAGCCATAACAGTGAATCTTGTCTCCCCGACATTGCAATTAAAAAGA
1 -TGCAGTGGAGCAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGA
* *
32687453 TTGAAGCCGCAACGGTGAATCTTACTTCCCTGGCGG
65 TTGAAGCCGCAACGGCGAATCTTACTTCCCTGGCGA
** * * *** * * * *
32687489 TGCAGTGGAATAGATTAAAGCTACAATGAAAAATCTT-ATTCCTCGACATCGCAGTT--AAAGAT
1 TGCAGTGGAGCAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGAT
* * * * *
32687551 TAAAGCCACAACAGCAAATCTTACTTCCCTGGCGG
66 TGAAGCCGCAACGGCGAATCTTACTTCCCTGGCGA
** * *
32687586 CACAGTGGAGCAGATTGAAGCTACGACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGAT
1 TGCAGTGGAGCAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGAT
* *
32687651 TGAAGCCGCAACGGTGAATCTTACTTTCCTGGCGA
66 TGAAGCCGCAACGGCGAATCTTACTTCCCTGGCGA
* * * * *
32687686 CGCAGTGGATCAGATTGAAGGTACAACGGTGAATCTTG-TTCCCCAACATTGCAATTTAAAAGAT
1 TGCAGTGGAGCAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGAT
* * *
32687750 TGAAGCCACAACAGCGAATCTTACTTCCCTGG-TA
66 TGAAGCCGCAACGGCGAATCTTACTTCCCTGGCGA
* * ** * * * * *
32687784 GTGCAGTGAAGCAGATTAAAGCTACAATAGCGAATCTTGCTTCCCTGACATCGCAGTTTAAAAAG
1 -TGCAGTGGAGCAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCA-ATTAAAAAG
*
32687849 TTTGAAGC
64 ATTGAAGC
32687857 TATAAATCAC
Statistics
Matches: 558, Mismatches: 100, Indels: 19
0.82 0.15 0.03
Matches are distributed among these distances:
97 63 0.11
98 16 0.03
99 99 0.18
100 364 0.65
101 16 0.03
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (100 bp):
TGCAGTGGAGCAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGAT
TGAAGCCGCAACGGCGAATCTTACTTCCCTGGCGA
Found at i:32687944 original size:46 final size:45
Alignment explanation
Indices: 32687871--32688028 Score: 134
Period size: 44 Copynumber: 3.6 Consensus size: 45
32687861 AATCACAGAT
* * * *
32687871 CTTATCTCTCTGAAGTTGTAGTAGAGCATATCAT-ACCATAT-CAAAC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCA-AGCATGA--ATATACAAAC
* * *
32687917 CTTATCTCCCTGAAGTTGCAGTGGAGC-AGCTTGAATATACCAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAAGCATGAATATACAAAC
** *
32687961 CTTATCTCCCTGAAGTTGCAGTGGAGC-AG-ATTGAAGCT--AATC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAAGCA-TGAATATACAAAC
32688003 C-TATCTCCCTGAAGTTGCAGTGGAGC
1 CTTATCTCCCTGAAGTTGCAGTGGAGC
32688029 GGATTAAATT
Statistics
Matches: 96, Mismatches: 13, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
41 25 0.26
42 2 0.02
43 4 0.04
44 40 0.42
45 1 0.01
46 24 0.25
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (45 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAAGCATGAATATACAAAC
Found at i:32688020 original size:41 final size:44
Alignment explanation
Indices: 32687919--32688043 Score: 166
Period size: 41 Copynumber: 2.9 Consensus size: 44
32687909 TATCAAACCT
* *
32687919 TATCTCCCTGAAGTTGCAGTGGAGCAGCTTGAATATACCAATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAATATACCAATCC
* *
32687963 TATCTCCCTGAAGTTGCAGTGGAGCAGATTG-A-A-GCTAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAATATACCAATCC
* * *
32688004 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAATTTACCA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAATATACCA
32688044 TGACAAGTTT
Statistics
Matches: 69, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
41 34 0.49
42 2 0.03
43 1 0.01
44 32 0.46
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (44 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAATATACCAATCC
Found at i:32689498 original size:18 final size:20
Alignment explanation
Indices: 32689475--32689514 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
32689465 TATAATGCAA
32689475 ACATTTT-A-TAATACACAT
1 ACATTTTAATTAATACACAT
32689493 ACATTTTAATTAATACACAT
1 ACATTTTAATTAATACACAT
32689513 AC
1 AC
32689515 TTATACATGT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 7 0.35
19 1 0.05
20 12 0.60
ACGTcount: A:0.45, C:0.17, G:0.00, T:0.38
Consensus pattern (20 bp):
ACATTTTAATTAATACACAT
Found at i:32697996 original size:20 final size:20
Alignment explanation
Indices: 32697973--32698013 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
32697963 AATTAAACCG
32697973 AGCTCAAATGAGCTAAATTA
1 AGCTCAAATGAGCTAAATTA
** *
32697993 AGCTCATGTGAGCTGAATTA
1 AGCTCAAATGAGCTAAATTA
32698013 A
1 A
32698014 AATTAGGTGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.39, C:0.15, G:0.20, T:0.27
Consensus pattern (20 bp):
AGCTCAAATGAGCTAAATTA
Found at i:32699991 original size:22 final size:22
Alignment explanation
Indices: 32699960--32700003 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
32699950 TTTTGAACCA
*
32699960 TTACCTTTTCGTACCAAATCCC
1 TTACCATTTCGTACCAAATCCC
*
32699982 TTACCATTTCGTACCAATTCCC
1 TTACCATTTCGTACCAAATCCC
32700004 AAATACCAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.23, C:0.36, G:0.05, T:0.36
Consensus pattern (22 bp):
TTACCATTTCGTACCAAATCCC
Found at i:32701081 original size:14 final size:15
Alignment explanation
Indices: 32701062--32701094 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
32701052 AAATGAGAGC
32701062 AAAAGA-ACAAAAAG
1 AAAAGATACAAAAAG
*
32701076 AAAAGATAGAAAAAG
1 AAAAGATACAAAAAG
32701091 AAAA
1 AAAA
32701095 AAAGAGTGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.79, C:0.03, G:0.15, T:0.03
Consensus pattern (15 bp):
AAAAGATACAAAAAG
Found at i:32701114 original size:20 final size:19
Alignment explanation
Indices: 32701065--32701125 Score: 54
Period size: 18 Copynumber: 3.1 Consensus size: 19
32701055 TGAGAGCAAA
*
32701065 AGAACAAAAAGAAAAGA-T-
1 AGAA-AAAAAAAAAAGAGTG
32701083 AGAAAAAGAAAAAAAGAGTG
1 AGAAAAA-AAAAAAAGAGTG
*
32701103 AGAAAACAAAAATAAAAAGTG
1 AGAAAA-AAAAA-AAAGAGTG
32701124 AG
1 AG
32701126 GTAAAATCGA
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
17 3 0.08
18 12 0.33
19 1 0.03
20 10 0.28
21 10 0.28
ACGTcount: A:0.70, C:0.03, G:0.20, T:0.07
Consensus pattern (19 bp):
AGAAAAAAAAAAAAGAGTG
Found at i:32704268 original size:12 final size:12
Alignment explanation
Indices: 32704247--32704295 Score: 62
Period size: 12 Copynumber: 3.9 Consensus size: 12
32704237 TCGAAACAAA
32704247 TTCAAAAAAAATT
1 TTCAAAAAAAA-T
32704260 TTCAAAAAAAAAT
1 TTC-AAAAAAAAT
* *
32704273 TTGAAAAAAAAA
1 TTCAAAAAAAAT
32704285 TTCAAAAAAAA
1 TTCAAAAAAAA
32704296 AATTAGTTTC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
12 18 0.56
13 6 0.19
14 8 0.25
ACGTcount: A:0.69, C:0.06, G:0.02, T:0.22
Consensus pattern (12 bp):
TTCAAAAAAAAT
Done.