Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67659327
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 461372 characters in sequence are not A, C, G, or T
File 108 of 216
Found at i:34122339 original size:27 final size:27
Alignment explanation
Indices: 34122309--34122363 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
34122299 ACGGGCAATA
*
34122309 TATGTTAATTTAATATTTCTAAAATTG
1 TATGCTAATTTAATATTTCTAAAATTG
*
34122336 TATGCTAATTTAATATTTCTATAATTG
1 TATGCTAATTTAATATTTCTAAAATTG
34122363 T
1 T
34122364 GTCTTAAACA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.35, C:0.05, G:0.07, T:0.53
Consensus pattern (27 bp):
TATGCTAATTTAATATTTCTAAAATTG
Found at i:34130150 original size:49 final size:47
Alignment explanation
Indices: 34129929--34130433 Score: 803
Period size: 47 Copynumber: 10.6 Consensus size: 47
34129919 CCCTTCGGGA
* * * * * *
34129929 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
34129976 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
34130023 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34130070 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
34130117 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34130166 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34130213 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
34130262 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34130311 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
34130358 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34130407 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
34130434 TATTCAAATA
Statistics
Matches: 430, Mismatches: 22, Indels: 12
0.93 0.05 0.03
Matches are distributed among these distances:
47 246 0.57
49 184 0.43
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:34130167 original size:96 final size:94
Alignment explanation
Indices: 34129929--34130433 Score: 803
Period size: 96 Copynumber: 5.3 Consensus size: 94
34129919 CCCTTCGGGA
* * * * * * * *
34129929 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
34129994 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
34130023 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
34130088 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
34130117 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
34130182 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
34130213 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
* *
34130278 ACACTTTCACATTCATCACATTGGCCATTCGGC
62 ACACTTTCACATTCATCACATCGGCCATTAGGC
34130311 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
* *
34130376 ACTTTCACATTCATCACATTGGCCATTCGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
34130407 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
34130434 TATTCAAATA
Statistics
Matches: 391, Mismatches: 16, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
94 93 0.24
96 253 0.65
98 45 0.12
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:34133912 original size:40 final size:40
Alignment explanation
Indices: 34133880--34134227 Score: 554
Period size: 40 Copynumber: 8.7 Consensus size: 40
34133870 CCAGCATGAT
* * * *
34133880 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * *
34133920 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
34133960 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
34134000 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
34134040 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
34134080 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
34134120 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
34134160 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
34134200 TGCTCTTCGGGACTTAGCCCGGAT-CATC
1 TGCTCTTCGGGACTTAGCCCGGATACATC
34134228 GTCGAGACCT
Statistics
Matches: 290, Mismatches: 18, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
39 4 0.01
40 286 0.99
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:34134321 original size:35 final size:38
Alignment explanation
Indices: 34134281--34134390 Score: 156
Period size: 38 Copynumber: 3.0 Consensus size: 38
34134271 GAATTTTAAT
34134281 CCGGACATAATCTCTG-ACATAGCCATC-GGTCTTTA-
1 CCGGACATAATCTCTGTACATAGCCATCGGGTCTTTAC
34134316 CCGGACATAATCTCTGTACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCTGTACATAGCCATCGGGTCTTTAC
* * *
34134354 CCGGACATAATCTCT-TCATATAGTCAGCGGGTCTTTA
1 CCGGACATAATCTCTGT-ACATAGCCATCGGGTCTTTA
34134391 AACTCGGATT
Statistics
Matches: 68, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
35 16 0.24
36 11 0.16
37 9 0.13
38 32 0.47
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (38 bp):
CCGGACATAATCTCTGTACATAGCCATCGGGTCTTTAC
Found at i:34137038 original size:49 final size:47
Alignment explanation
Indices: 34136817--34137321 Score: 812
Period size: 47 Copynumber: 10.6 Consensus size: 47
34136807 CCCTTCGGGA
* * * * * *
34136817 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
34136864 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
34136911 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34136958 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
34137005 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34137054 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34137101 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
34137150 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34137199 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
34137246 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34137295 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
34137322 TATTCAAATA
Statistics
Matches: 432, Mismatches: 20, Indels: 12
0.93 0.04 0.03
Matches are distributed among these distances:
47 247 0.57
49 185 0.43
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:34137055 original size:96 final size:94
Alignment explanation
Indices: 34136817--34137321 Score: 812
Period size: 96 Copynumber: 5.3 Consensus size: 94
34136807 CCCTTCGGGA
* * * * * * * *
34136817 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
34136882 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
34136911 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
34136976 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
34137005 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
34137070 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
34137101 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
*
34137166 ACACTTTCACATTCATCACATTGGCCATTAGGC
62 ACACTTTCACATTCATCACATCGGCCATTAGGC
34137199 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
* *
34137264 ACTTTCACATTCATCACATTGGCCATTCGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
34137295 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
34137322 TATTCAAATA
Statistics
Matches: 391, Mismatches: 16, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
94 93 0.24
96 252 0.64
98 46 0.12
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:34145688 original size:25 final size:25
Alignment explanation
Indices: 34145655--34145723 Score: 120
Period size: 25 Copynumber: 2.8 Consensus size: 25
34145645 GAGCTGTAAT
34145655 TGGTAAGCTCCTCTAAGCTGAATAA
1 TGGTAAGCTCCTCTAAGCTGAATAA
34145680 TGGTAAGCTCCTCTAAGCTGAATAA
1 TGGTAAGCTCCTCTAAGCTGAATAA
* *
34145705 CGGTAAGCTCCTCTGAGCT
1 TGGTAAGCTCCTCTAAGCT
34145724 AAAATTGGTA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.28
Consensus pattern (25 bp):
TGGTAAGCTCCTCTAAGCTGAATAA
Found at i:34148977 original size:19 final size:19
Alignment explanation
Indices: 34148949--34148989 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
34148939 TCTTAGAAAC
34148949 AAAGAGAGCAGAAGAAAAG
1 AAAGAGAGCAGAAGAAAAG
*
34148968 AAAGATAGCAGAAGAAAAG
1 AAAGAGAGCAGAAGAAAAG
34148987 AAA
1 AAA
34148990 CAAAGGGGGC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.66, C:0.05, G:0.27, T:0.02
Consensus pattern (19 bp):
AAAGAGAGCAGAAGAAAAG
Found at i:34153650 original size:13 final size:13
Alignment explanation
Indices: 34153632--34153659 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
34153622 TATATAAAAG
34153632 AATATAACAGCAA
1 AATATAACAGCAA
34153645 AATATAACAGCAA
1 AATATAACAGCAA
34153658 AA
1 AA
34153660 AGAAAATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.64, C:0.14, G:0.07, T:0.14
Consensus pattern (13 bp):
AATATAACAGCAA
Found at i:34156393 original size:56 final size:57
Alignment explanation
Indices: 34156318--34156437 Score: 224
Period size: 56 Copynumber: 2.1 Consensus size: 57
34156308 ACGACACTGT
*
34156318 AAAGAAATTCTAAACTAAGATAGCATTGAAGCGTCCTTCAAATTGGATCAAGGCTTG
1 AAAGCAATTCTAAACTAAGATAGCATTGAAGCGTCCTTCAAATTGGATCAAGGCTTG
34156375 AAAGCAATTCT-AACTAAGATAGCATTGAAGCGTCCTTCAAATTGGATCAAGGCTTG
1 AAAGCAATTCTAAACTAAGATAGCATTGAAGCGTCCTTCAAATTGGATCAAGGCTTG
34156431 AAAGCAA
1 AAAGCAA
34156438 ATCAAAGTTT
Statistics
Matches: 62, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
56 52 0.84
57 10 0.16
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.25
Consensus pattern (57 bp):
AAAGCAATTCTAAACTAAGATAGCATTGAAGCGTCCTTCAAATTGGATCAAGGCTTG
Found at i:34163722 original size:21 final size:22
Alignment explanation
Indices: 34163671--34163722 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 22
34163661 TAAAAATAAG
*
34163671 AAATTAAAATAAAAACAATTTT
1 AAATTAAAATAAAAACAATTTC
** *
34163693 ACCTT-AAATAAAATCAA-TTC
1 AAATTAAAATAAAAACAATTTC
34163713 AAATTAAAAT
1 AAATTAAAAT
34163723 TCATCTGGTC
Statistics
Matches: 23, Mismatches: 6, Indels: 3
0.72 0.19 0.09
Matches are distributed among these distances:
20 5 0.22
21 15 0.65
22 3 0.13
ACGTcount: A:0.60, C:0.10, G:0.00, T:0.31
Consensus pattern (22 bp):
AAATTAAAATAAAAACAATTTC
Found at i:34167353 original size:26 final size:26
Alignment explanation
Indices: 34167276--34167358 Score: 107
Period size: 26 Copynumber: 3.2 Consensus size: 26
34167266 CGTACAAAGG
34167276 CTTTCATATTACGCCACAAACT-CTTT
1 CTTTCATATTACGCCACAAA-TGCTTT
*
34167302 ATTTCATATTACGCCACAAA-GACTTT
1 CTTTCATATTACGCCACAAATG-CTTT
* *
34167328 CTTTCATATTATGCCATAAATGCTTT
1 CTTTCATATTACGCCACAAATGCTTT
34167354 CTTTC
1 CTTTC
34167359 CTGACGTGTT
Statistics
Matches: 50, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
26 49 0.98
27 1 0.02
ACGTcount: A:0.28, C:0.25, G:0.06, T:0.41
Consensus pattern (26 bp):
CTTTCATATTACGCCACAAATGCTTT
Found at i:34167928 original size:41 final size:41
Alignment explanation
Indices: 34167866--34167947 Score: 128
Period size: 41 Copynumber: 2.0 Consensus size: 41
34167856 TGTAAGAGTT
* **
34167866 AGTTTAGGGACTTACTTGACAACCATTGATATCAACTAGGA
1 AGTTTAGGGACTCACCCGACAACCATTGATATCAACTAGGA
*
34167907 AGTTTAGGGACTCACCCGACAACCATTGATATCAGCTAGGA
1 AGTTTAGGGACTCACCCGACAACCATTGATATCAACTAGGA
34167948 CTTTAGATTT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.26
Consensus pattern (41 bp):
AGTTTAGGGACTCACCCGACAACCATTGATATCAACTAGGA
Found at i:34175928 original size:15 final size:15
Alignment explanation
Indices: 34175908--34175962 Score: 69
Period size: 15 Copynumber: 3.8 Consensus size: 15
34175898 ACTCTCCTCA
*
34175908 TTCTTTTCTTTCTTT
1 TTCTTTTCTCTCTTT
*
34175923 TTCTTTTCACTCTTT
1 TTCTTTTCTCTCTTT
*
34175938 TTGTTTT-TCTCTTT
1 TTCTTTTCTCTCTTT
34175952 TTCTTTT-TCTC
1 TTCTTTTCTCTC
34175963 GCTCAATAGA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
14 16 0.46
15 19 0.54
ACGTcount: A:0.02, C:0.22, G:0.02, T:0.75
Consensus pattern (15 bp):
TTCTTTTCTCTCTTT
Found at i:34178058 original size:12 final size:13
Alignment explanation
Indices: 34178041--34178086 Score: 76
Period size: 13 Copynumber: 3.6 Consensus size: 13
34178031 GAATACAAAC
34178041 TTTTTTTTT-GAA
1 TTTTTTTTTCGAA
*
34178053 TTTTTTTTTCGAT
1 TTTTTTTTTCGAA
34178066 TTTTTTTTTCGAA
1 TTTTTTTTTCGAA
34178079 TTTTTTTT
1 TTTTTTTT
34178087 ACAATCTCAT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
12 9 0.29
13 22 0.71
ACGTcount: A:0.11, C:0.04, G:0.07, T:0.78
Consensus pattern (13 bp):
TTTTTTTTTCGAA
Found at i:34178059 original size:13 final size:13
Alignment explanation
Indices: 34178041--34178086 Score: 67
Period size: 12 Copynumber: 3.5 Consensus size: 13
34178031 GAATACAAAC
34178041 TTTTTTTTTGAAT
1 TTTTTTTTTGAAT
*
34178054 TTTTTTTTCG-AT
1 TTTTTTTTTGAAT
34178066 TTTTTTTTTCGAAT
1 TTTTTTTTT-GAAT
34178080 TTTTTTT
1 TTTTTTT
34178087 ACAATCTCAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
12 10 0.34
13 10 0.34
14 9 0.31
ACGTcount: A:0.11, C:0.04, G:0.07, T:0.78
Consensus pattern (13 bp):
TTTTTTTTTGAAT
Found at i:34181011 original size:3 final size:3
Alignment explanation
Indices: 34180989--34181092 Score: 122
Period size: 3 Copynumber: 35.3 Consensus size: 3
34180979 GATCTATCTC
* *
34180989 ACA ACA CCA ACA AAA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA
1 ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA
* * * * * *
34181037 ATA ACA ACA ATA GCA ACA ACA ACA ACA A-A A-A AAA ACA ACA ATA GCA
1 ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA
34181083 ACA ACA ACA A
1 ACA ACA ACA A
34181093 AGCTTACTAC
Statistics
Matches: 85, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
2 4 0.05
3 81 0.95
ACGTcount: A:0.67, C:0.28, G:0.02, T:0.03
Consensus pattern (3 bp):
ACA
Found at i:34182548 original size:32 final size:32
Alignment explanation
Indices: 34182507--34182603 Score: 194
Period size: 32 Copynumber: 3.0 Consensus size: 32
34182497 TAATAAGGTA
34182507 AGATTTCTATCCTTAATTATAGGGATTCCAAC
1 AGATTTCTATCCTTAATTATAGGGATTCCAAC
34182539 AGATTTCTATCCTTAATTATAGGGATTCCAAC
1 AGATTTCTATCCTTAATTATAGGGATTCCAAC
34182571 AGATTTCTATCCTTAATTATAGGGATTCCAAC
1 AGATTTCTATCCTTAATTATAGGGATTCCAAC
34182603 A
1 A
34182604 CTCCCTCTCA
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 65 1.00
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.37
Consensus pattern (32 bp):
AGATTTCTATCCTTAATTATAGGGATTCCAAC
Found at i:34187180 original size:32 final size:32
Alignment explanation
Indices: 34187139--34187203 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
34187129 TAATAAGGTA
34187139 AGATTTCTATCCTTAATTATAGGGATTCCAAC
1 AGATTTCTATCCTTAATTATAGGGATTCCAAC
34187171 AGATTTCTATCCTTAATTATAGGGATTCCAAC
1 AGATTTCTATCCTTAATTATAGGGATTCCAAC
34187203 A
1 A
34187204 ACAACTCATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.37
Consensus pattern (32 bp):
AGATTTCTATCCTTAATTATAGGGATTCCAAC
Found at i:34189719 original size:26 final size:26
Alignment explanation
Indices: 34189684--34189735 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
34189674 AATGTGAAAG
*
34189684 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
34189710 GGGGTTGCTAAGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
34189736 TTCATTGGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.13, C:0.23, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:34189783 original size:102 final size:104
Alignment explanation
Indices: 34189607--34189971 Score: 609
Period size: 102 Copynumber: 3.6 Consensus size: 104
34189597 TTGTATATAA
** *
34189607 AGGGGTTGCTGTGTGCTGATT-CCCGATTCATTGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
34189670 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
34189709 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCG-TATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
34189773 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
34189812 AGGGGTTGCTAAGTGCTGATTCCCCG-TTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
34189876 TGAAA--TGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
** *
34189913 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGCGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
34189972 ATAACGGTTA
Statistics
Matches: 253, Mismatches: 6, Indels: 8
0.95 0.02 0.03
Matches are distributed among these distances:
101 58 0.23
102 116 0.46
103 79 0.31
ACGTcount: A:0.19, C:0.21, G:0.30, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:34197290 original size:26 final size:26
Alignment explanation
Indices: 34197254--34197305 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
34197244 GAAATGTGAA
*
34197254 AGGGGTTGCTATGTGCTGATTCCCCG
1 AGGGGTTGCTAAGTGCTGATTCCCCG
34197280 AGGGGTTGCTAAGTGCTGATTCCCCG
1 AGGGGTTGCTAAGTGCTGATTCCCCG
34197306 TTCATTGGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.13, C:0.23, G:0.35, T:0.29
Consensus pattern (26 bp):
AGGGGTTGCTAAGTGCTGATTCCCCG
Found at i:34197417 original size:102 final size:104
Alignment explanation
Indices: 34197180--34197539 Score: 573
Period size: 100 Copynumber: 3.6 Consensus size: 104
34197170 TTGTATATAA
** *
34197180 AGGGGTTGCTGTGTGCTGATTCCCCGATT-A-TGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
34197242 TTGAAATGTGAAA-GGGGTTGCTATGTGCTGATT-CCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
34197280 AGGGGTTGCTAAGTGCTGATTCCCCG-TTCATTGGTGGTGCTAAGTGCG-TATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
34197343 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
34197382 AGGGGTTGCTAAGTGCTGATTCCCCG-TTCATTGGTGGTGCTAAGTGCGATATCCACCATA--TT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
34197444 TGAAA--TGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
** *
34197481 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGCGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
34197540 ATAACGGTTA
Statistics
Matches: 248, Mismatches: 6, Indels: 12
0.93 0.02 0.05
Matches are distributed among these distances:
99 60 0.24
100 80 0.32
101 44 0.18
102 53 0.21
103 11 0.04
ACGTcount: A:0.19, C:0.21, G:0.30, T:0.30
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:34199838 original size:14 final size:15
Alignment explanation
Indices: 34199817--34199867 Score: 79
Period size: 14 Copynumber: 3.5 Consensus size: 15
34199807 TGCAGGTAGG
34199817 ATGAAGGAAAAGAGA
1 ATGAAGGAAAAGAGA
34199832 A-GAAGGAAAAGAGA
1 ATGAAGGAAAAGAGA
34199846 ATG-AGGAAAAGAGA
1 ATGAAGGAAAAGAGA
*
34199860 ATTAAGGA
1 ATGAAGGA
34199868 TGTGAAACAT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
14 27 0.82
15 6 0.18
ACGTcount: A:0.59, C:0.00, G:0.33, T:0.08
Consensus pattern (15 bp):
ATGAAGGAAAAGAGA
Found at i:34200705 original size:2 final size:2
Alignment explanation
Indices: 34200698--34200737 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
34200688 TATTACAAAA
*
34200698 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TT TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
34200738 GTTCTTCTAC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (2 bp):
TC
Found at i:34204051 original size:26 final size:26
Alignment explanation
Indices: 34204016--34204096 Score: 126
Period size: 26 Copynumber: 3.1 Consensus size: 26
34204006 AACACACCAA
* * *
34204016 TATCGTAGCAAAGCTGCTAGTAATAG
1 TATCGCAGCAAAGCTGCCAGTAACAG
34204042 TATCGCAGCAAAGCTGCCAGTAACAG
1 TATCGCAGCAAAGCTGCCAGTAACAG
*
34204068 TATCACAGCAAAGCTGCCAGTAACAG
1 TATCGCAGCAAAGCTGCCAGTAACAG
34204094 TAT
1 TAT
34204097 ACTTCCTCCA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.21
Consensus pattern (26 bp):
TATCGCAGCAAAGCTGCCAGTAACAG
Found at i:34204268 original size:28 final size:28
Alignment explanation
Indices: 34204237--34204323 Score: 81
Period size: 28 Copynumber: 3.1 Consensus size: 28
34204227 CATAACGGTT
34204237 ATTTCCATCTATTAGGGGTAAAATAGTC
1 ATTTCCATCTATTAGGGGTAAAATAGTC
*** *
34204265 ATTTTACC--CT-TTAGGGGTATTTTGGTC
1 A-TTT-CCATCTATTAGGGGTAAAATAGTC
* *
34204292 ATTTCCATCTATTAGGGGTAAAACAGTT
1 ATTTCCATCTATTAGGGGTAAAATAGTC
34204320 ATTT
1 ATTT
34204324 TACCCTTTAG
Statistics
Matches: 44, Mismatches: 10, Indels: 10
0.69 0.16 0.16
Matches are distributed among these distances:
25 2 0.05
26 3 0.07
27 16 0.36
28 18 0.41
29 3 0.07
30 2 0.05
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.41
Consensus pattern (28 bp):
ATTTCCATCTATTAGGGGTAAAATAGTC
Found at i:34204282 original size:27 final size:27
Alignment explanation
Indices: 34204248--34204338 Score: 78
Period size: 27 Copynumber: 3.3 Consensus size: 27
34204238 TTTCCATCTA
34204248 TTAGGGGTAAAATAGTCATTTTACCCT
1 TTAGGGGTAAAATAGTCATTTTACCCT
*** *
34204275 TTAGGGGTATTTTGGTCA-TTT-CCATCT
1 TTAGGGGTAAAATAGTCATTTTACC--CT
* *
34204302 ATTAGGGGTAAAACAGTTATTTTACCCT
1 -TTAGGGGTAAAATAGTCATTTTACCCT
*
34204330 TTAGAGGTA
1 TTAGGGGTA
34204339 TTTTTGTCAT
Statistics
Matches: 48, Mismatches: 11, Indels: 10
0.70 0.16 0.14
Matches are distributed among these distances:
25 2 0.04
26 3 0.06
27 24 0.50
28 14 0.29
29 3 0.06
30 2 0.04
ACGTcount: A:0.26, C:0.13, G:0.21, T:0.40
Consensus pattern (27 bp):
TTAGGGGTAAAATAGTCATTTTACCCT
Found at i:34204297 original size:55 final size:55
Alignment explanation
Indices: 34204237--34204350 Score: 192
Period size: 55 Copynumber: 2.1 Consensus size: 55
34204227 CATAACGGTT
* *
34204237 ATTTCCATCTATTAGGGGTAAAATAGTCATTTTACCCTTTAGGGGTATTTTGGTC
1 ATTTCCATCTATTAGGGGTAAAACAGTCATTTTACCCTTTAGAGGTATTTTGGTC
* *
34204292 ATTTCCATCTATTAGGGGTAAAACAGTTATTTTACCCTTTAGAGGTATTTTTGTC
1 ATTTCCATCTATTAGGGGTAAAACAGTCATTTTACCCTTTAGAGGTATTTTGGTC
34204347 ATTT
1 ATTT
34204351 TACCTATTTT
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.25, C:0.14, G:0.18, T:0.44
Consensus pattern (55 bp):
ATTTCCATCTATTAGGGGTAAAACAGTCATTTTACCCTTTAGAGGTATTTTGGTC
Found at i:34206861 original size:32 final size:32
Alignment explanation
Indices: 34206820--34206885 Score: 116
Period size: 32 Copynumber: 2.1 Consensus size: 32
34206810 CACATGAACG
34206820 TAATGCCATTAAAG-TCATACTTTCCATAAACA
1 TAATGCCATT-AAGCTCATACTTTCCATAAACA
34206852 TAATGCCATTAAGCTCATACTTTCCATAAACA
1 TAATGCCATTAAGCTCATACTTTCCATAAACA
34206884 TA
1 TA
34206886 GATATACATT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
31 3 0.09
32 30 0.91
ACGTcount: A:0.39, C:0.23, G:0.06, T:0.32
Consensus pattern (32 bp):
TAATGCCATTAAGCTCATACTTTCCATAAACA
Found at i:34209534 original size:1 final size:1
Alignment explanation
Indices: 34209530--34209573 Score: 61
Period size: 1 Copynumber: 44.0 Consensus size: 1
34209520 TTGACATAAC
** *
34209530 AAAAAAAAAAAAAAAAAAAAAAAAAGTACAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
34209574 GAGCTAGATC
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
1 38 1.00
ACGTcount: A:0.93, C:0.02, G:0.02, T:0.02
Consensus pattern (1 bp):
A
Found at i:34215579 original size:109 final size:106
Alignment explanation
Indices: 34215276--34215607 Score: 411
Period size: 109 Copynumber: 3.1 Consensus size: 106
34215266 CTGTGTGGGC
34215276 TGATTCCCCGATTCATTGG-GGTGCTATGTGCGTGA-CCA-CATATCTACATTGAAATGTGAAAG
1 TGATTCCCCGATTCATTGGTGGTGCTATGTGCGTGATCCACCATATCT---TTGAAATGTGAAAG
**
34215338 GGGGTTGCTAATGTGCTGATT-CCCCGAGGGGTTGCT-GTGTGC-
63 GGGGTTGCT-ATGTGCTGATTCCCCCGAGGGGTTGCTAAAGTGCT
* *
34215380 TGATTCCCTGATTCATTGGTGGTGCTATG-GCGTGAT-C-CCATATCTTGGAAATGTGAAAAGGG
1 TGATTCCCCGATTCATTGGTGGTGCTATGTGCGTGATCCACCATATCTTTGAAATGTG-AAAGGG
34215442 CGGTTGCTATGTGCTGATTCCCCC-AGGGGTTGCTAAAGTGCT
65 -GGTTGCTATGTGCTGATTCCCCCGAGGGGTTGCTAAAGTGCT
* *
34215484 TGATTCCCCCGGTTCATTGGTGGTGCTACGTGCGAT-ATCCACGCATATCTTTGAAATGTTGAAA
1 TGATT-CCCCGATTCATTGGTGGTGCTATGTGCG-TGATCCAC-CATATCTTTGAAATG-TGAAA
34215548 GGGGGTTGCTCATGTGCT-ATTCCCCCGAGGGGTTGCATAAAGTG-T
62 GGGGGTTGCT-ATGTGCTGATTCCCCCGAGGGGTTGC-TAAAGTGCT
34215593 TGATTCCCCGATTCA
1 TGATTCCCCGATTCA
34215608 GGCGGTGTGC
Statistics
Matches: 201, Mismatches: 9, Indels: 32
0.83 0.04 0.13
Matches are distributed among these distances:
101 9 0.04
102 27 0.13
103 15 0.07
104 37 0.18
105 30 0.15
106 5 0.02
107 2 0.01
108 25 0.12
109 42 0.21
110 9 0.04
ACGTcount: A:0.19, C:0.20, G:0.29, T:0.31
Consensus pattern (106 bp):
TGATTCCCCGATTCATTGGTGGTGCTATGTGCGTGATCCACCATATCTTTGAAATGTGAAAGGGG
GTTGCTATGTGCTGATTCCCCCGAGGGGTTGCTAAAGTGCT
Found at i:34221467 original size:17 final size:17
Alignment explanation
Indices: 34221430--34221469 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
34221420 GATTCGCCAT
*
34221430 TTGGCGAACTCTAGGTT
1 TTGGCGAACTCTAGGTA
34221447 TTGGCGAACTCTATGG-A
1 TTGGCGAACTCTA-GGTA
34221464 TTGGCG
1 TTGGCG
34221470 GACTGTTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 19 0.90
18 2 0.10
ACGTcount: A:0.17, C:0.17, G:0.33, T:0.33
Consensus pattern (17 bp):
TTGGCGAACTCTAGGTA
Found at i:34231619 original size:17 final size:17
Alignment explanation
Indices: 34231599--34231636 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
34231589 TTTCTCTGTA
34231599 ATTTGCCAT-TACATTTT
1 ATTTGCCATATA-ATTTT
34231616 ATTTGCCATATAATTTT
1 ATTTGCCATATAATTTT
34231633 -TTTG
1 ATTTG
34231637 TTTTTAGGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 4 0.20
17 14 0.70
18 2 0.10
ACGTcount: A:0.24, C:0.13, G:0.08, T:0.55
Consensus pattern (17 bp):
ATTTGCCATATAATTTT
Found at i:34238038 original size:51 final size:51
Alignment explanation
Indices: 34237971--34238182 Score: 223
Period size: 51 Copynumber: 4.2 Consensus size: 51
34237961 ATACCCGGTT
* *
34237971 CACATAGTAGCTTGCACATAGTACTACACATGTGACCATTTTCATCCGATA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCATTTTCATCCGATA
* * *** *
34238022 CACGTAGTAGCCTGCACATAGTACTACACACGTGATCGAAGCT-ATCCGGTA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGA-CCATTTTCATCCGATA
* * ** * *
34238073 CGCATAGTAGCTTGCACATAGTACTACACATATGACC--TATCATTCCGGTA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCATTTTCA-TCCGATA
** * *
34238123 CATGTAGTAGCCTGCACATAGTACTACAAACGTGACCATTTTCATCTGATA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCATTTTCATCCGATA
34238174 CACATAGTA
1 CACATAGTA
34238183 CTACACACGT
Statistics
Matches: 128, Mismatches: 28, Indels: 10
0.77 0.17 0.06
Matches are distributed among these distances:
48 1 0.01
49 1 0.01
50 38 0.30
51 81 0.63
52 7 0.05
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (51 bp):
CACATAGTAGCCTGCACATAGTACTACACACGTGACCATTTTCATCCGATA
Found at i:34238094 original size:102 final size:101
Alignment explanation
Indices: 34237973--34238157 Score: 300
Period size: 101 Copynumber: 1.8 Consensus size: 101
34237963 ACCCGGTTCA
* *
34237973 CATAGTAGCTTGCACATAGTACTACACATGTGACCATTTTCA-TCCGATACACGTAGTAGCCTGC
1 CATAGTAGCTTGCACATAGTACTACACATATGACC--TATCATTCCGATACACGTAGTAGCCTGC
*
34238037 ACATAGTACTACACACGTGATCGAAGCTATCCGGTACG
64 ACATAGTACTACAAACGTGATCGAAGCTATCCGGTACG
* *
34238075 CATAGTAGCTTGCACATAGTACTACACATATGACCTATCATTCCGGTACATGTAGTAGCCTGCAC
1 CATAGTAGCTTGCACATAGTACTACACATATGACCTATCATTCCGATACACGTAGTAGCCTGCAC
34238140 ATAGTACTACAAACGTGA
66 ATAGTACTACAAACGTGA
34238158 CCATTTTCAT
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
100 4 0.05
101 39 0.51
102 34 0.44
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (101 bp):
CATAGTAGCTTGCACATAGTACTACACATATGACCTATCATTCCGATACACGTAGTAGCCTGCAC
ATAGTACTACAAACGTGATCGAAGCTATCCGGTACG
Found at i:34240125 original size:33 final size:33
Alignment explanation
Indices: 34240083--34240150 Score: 109
Period size: 33 Copynumber: 2.1 Consensus size: 33
34240073 CCAACCTCAA
*
34240083 GGATTGGTCAACAAGGTTAGATAAAGCCTTGTG
1 GGATTGGTCAACAAGGTTAGATAAAGCCCTGTG
* *
34240116 GGATTGGTCAGCAAGGTTAGATGAAGCCCTGTG
1 GGATTGGTCAACAAGGTTAGATAAAGCCCTGTG
34240149 GG
1 GG
34240151 CTTATGGCAC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.26, C:0.13, G:0.35, T:0.25
Consensus pattern (33 bp):
GGATTGGTCAACAAGGTTAGATAAAGCCCTGTG
Found at i:34247607 original size:45 final size:45
Alignment explanation
Indices: 34247543--34247635 Score: 159
Period size: 45 Copynumber: 2.1 Consensus size: 45
34247533 AGCCCGAGCC
* *
34247543 AAGAGTTGAGTATAGAGTATACACGGATGCGTCATTCAACAGGCT
1 AAGAGTTGAGTATAGAGTATACACGAATGCATCATTCAACAGGCT
*
34247588 AAGAGTTGAGTATAGAGTATTCACGAATGCATCATTCAACAGGCT
1 AAGAGTTGAGTATAGAGTATACACGAATGCATCATTCAACAGGCT
34247633 AAG
1 AAG
34247636 TTGTGTCCTT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.35, C:0.15, G:0.25, T:0.25
Consensus pattern (45 bp):
AAGAGTTGAGTATAGAGTATACACGAATGCATCATTCAACAGGCT
Found at i:34259452 original size:40 final size:40
Alignment explanation
Indices: 34259369--34259557 Score: 236
Period size: 40 Copynumber: 4.8 Consensus size: 40
34259359 GAGTTACTGG
* * * * * *
34259369 AGTATAAATAGGGGCACAAAAGTGCATTC-AGGATACCAA
1 AGTACAAACAGGGGCACATATGTGCATTCAAGGGTACCGA
* * * *
34259408 AGTACAAACAGCGGCACACATGTGCTTTCAAGGGCACCGA
1 AGTACAAACAGGGGCACATATGTGCATTCAAGGGTACCGA
*
34259448 AGTACAAATAGGGGCACATATGTGCATTCAAGGGTACCGA
1 AGTACAAACAGGGGCACATATGTGCATTCAAGGGTACCGA
** * *
34259488 AGTACAAACAGGGGCATGTATGTGCATTTAGGGGTACCGA
1 AGTACAAACAGGGGCACATATGTGCATTCAAGGGTACCGA
34259528 AGTACAAACAGGGGCACATATGTGCATTCA
1 AGTACAAACAGGGGCACATATGTGCATTCA
34259558 TACAATAATT
Statistics
Matches: 127, Mismatches: 22, Indels: 1
0.85 0.15 0.01
Matches are distributed among these distances:
39 23 0.18
40 104 0.82
ACGTcount: A:0.35, C:0.19, G:0.26, T:0.19
Consensus pattern (40 bp):
AGTACAAACAGGGGCACATATGTGCATTCAAGGGTACCGA
Found at i:34260820 original size:38 final size:38
Alignment explanation
Indices: 34260755--34260827 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 38
34260745 CATAATAGGG
**
34260755 TTGCAAACATACAAGGATTGCTGTAGAACAAACTCATA
1 TTGCAAACATACAAGGATACCTGTAGAACAAACTCATA
*
34260793 TTGCAAACATACAAGGGTCACCT-TAGAACAAACTC
1 TTGCAAACATACAAGGAT-ACCTGTAGAACAAACTC
34260828 GTATGATGAT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
38 29 0.94
39 2 0.06
ACGTcount: A:0.41, C:0.22, G:0.15, T:0.22
Consensus pattern (38 bp):
TTGCAAACATACAAGGATACCTGTAGAACAAACTCATA
Found at i:34261705 original size:12 final size:12
Alignment explanation
Indices: 34261688--34261718 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
34261678 TATGAGTCTT
34261688 ATAACAAGTTAA
1 ATAACAAGTTAA
34261700 ATAACAAGTTAA
1 ATAACAAGTTAA
34261712 ATAACAA
1 ATAACAA
34261719 TAAGCACATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.61, C:0.10, G:0.06, T:0.23
Consensus pattern (12 bp):
ATAACAAGTTAA
Found at i:34262029 original size:43 final size:43
Alignment explanation
Indices: 34261903--34262029 Score: 191
Period size: 43 Copynumber: 3.0 Consensus size: 43
34261893 ACCAATAATC
* * * ** *
34261903 GCAGACAAGCTGCTATGTTGGTTGTACATAAACCACCAAATTT
1 GCAGACAAGTTGCCATGTAGGTTGTGGATAAACCACCAATTTT
34261946 GCAGACAAGTTGCCATGTAGGTTGTGGATAAACCACCAATTTT
1 GCAGACAAGTTGCCATGTAGGTTGTGGATAAACCACCAATTTT
*
34261989 GCAGACAAGTTGCCATGTAGGTTGTGGATAAACCAACAATT
1 GCAGACAAGTTGCCATGTAGGTTGTGGATAAACCACCAATT
34262030 CTTCCTCCTT
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 77 1.00
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (43 bp):
GCAGACAAGTTGCCATGTAGGTTGTGGATAAACCACCAATTTT
Found at i:34263176 original size:22 final size:22
Alignment explanation
Indices: 34263134--34263178 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
34263124 TTTTAGAGGT
*
34263134 GAAATGGAAGAAAATATGAAGA
1 GAAATGGAAGAAAATAGGAAGA
*
34263156 GAAATGGGAAGAGAA-AGGAAGA
1 GAAAT-GGAAGAAAATAGGAAGA
34263178 G
1 G
34263179 GGGCGGCTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.56, C:0.00, G:0.36, T:0.09
Consensus pattern (22 bp):
GAAATGGAAGAAAATAGGAAGA
Found at i:34265830 original size:43 final size:43
Alignment explanation
Indices: 34265783--34265907 Score: 162
Period size: 43 Copynumber: 2.9 Consensus size: 43
34265773 CCAAATGCAT
* *
34265783 AGACAAGCTACCATGTAGGTTGTGAATAAACCATAAATTTTGC
1 AGACAAGCTACCATGTAGGTTGTGGATAAACCATAAATTTCGC
* * * * *
34265826 AGACAAACTGCCATGTAAGTTGTGGGTAAACCACCAAA-TTCGC
1 AGACAAGCTACCATGTAGGTTGTGGATAAACCA-TAAATTTCGC
*
34265869 AGACAAGCTACCATGTAGGTTGTGGATAAACCATCAATT
1 AGACAAGCTACCATGTAGGTTGTGGATAAACCATAAATT
34265908 CTTCCTCCTT
Statistics
Matches: 67, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
42 2 0.03
43 62 0.93
44 3 0.04
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (43 bp):
AGACAAGCTACCATGTAGGTTGTGGATAAACCATAAATTTCGC
Found at i:34270207 original size:20 final size:20
Alignment explanation
Indices: 34270182--34270223 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
34270172 CTGAATCATT
34270182 TCTAAGGTGTTTCTAAGGCC
1 TCTAAGGTGTTTCTAAGGCC
* *
34270202 TCTAAGGTGTTTTTAAGTCC
1 TCTAAGGTGTTTCTAAGGCC
34270222 TC
1 TC
34270224 GAAGCTCGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.19, C:0.19, G:0.21, T:0.40
Consensus pattern (20 bp):
TCTAAGGTGTTTCTAAGGCC
Found at i:34279370 original size:25 final size:25
Alignment explanation
Indices: 34279352--34279430 Score: 122
Period size: 25 Copynumber: 3.2 Consensus size: 25
34279342 ACGAGTTGTG
34279352 AATCGGTATGCTCTCACGAGCTATA
1 AATCGGTATGCTCTCACGAGCTATA
* * *
34279377 AATCAGTAGGCTCTCACGAGCCATA
1 AATCGGTATGCTCTCACGAGCTATA
*
34279402 AATCGGTATGCTCTCACGAGCCATA
1 AATCGGTATGCTCTCACGAGCTATA
34279427 AATC
1 AATC
34279431 AGTAACCCTA
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 49 1.00
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (25 bp):
AATCGGTATGCTCTCACGAGCTATA
Found at i:34280838 original size:13 final size:13
Alignment explanation
Indices: 34280801--34280841 Score: 64
Period size: 13 Copynumber: 3.2 Consensus size: 13
34280791 GCATGTATAC
*
34280801 AACATAACTTGAA
1 AACATAACTTGGA
*
34280814 AACATATCTTGGA
1 AACATAACTTGGA
34280827 AACATAACTTGGA
1 AACATAACTTGGA
34280840 AA
1 AA
34280842 TAGAGTTTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.49, C:0.15, G:0.12, T:0.24
Consensus pattern (13 bp):
AACATAACTTGGA
Found at i:34289088 original size:27 final size:27
Alignment explanation
Indices: 34289050--34289383 Score: 168
Period size: 27 Copynumber: 12.4 Consensus size: 27
34289040 GTATATGATG
* * *
34289050 GGGTATAATGATTGTTATGCCCTCGTA
1 GGGTAAAATGATCGTAATGCCCTCGTA
* *
34289077 GGGTAAAATGATCATAATGCCCCCGTA
1 GGGTAAAATGATCGTAATGCCCTCGTA
* * * **
34289104 AGGTAGAATGACCGTAATGCCCTTATA
1 GGGTAAAATGATCGTAATGCCCTCGTA
* ** * *
34289131 GGGTAAAATGATC-AAAAACCCCCTATA
1 GGGTAAAATGATCGTAATGCCCTC-GTA
* * * *
34289158 GGATAAAATGACCGTAATGCCCCCATA
1 GGGTAAAATGATCGTAATGCCCTCGTA
* * *
34289185 TGGTAAAATAACCGTAATGCCC-CTGTA
1 GGGTAAAATGATCGTAATGCCCTC-GTA
* *
34289212 AGGTAAAATGATCGTAATTCCC-CTGTA
1 GGGTAAAATGATCGTAATGCCCTC-GTA
* * ** *
34289239 GAGTAAAATGACCG-AAAACCCTCATA
1 GGGTAAAATGATCGTAATGCCCTCGTA
34289265 GGGTAAAATGA-CAGTAATGCCC-CTGTA
1 GGGTAAAATGATC-GTAATGCCCTC-GTA
* * * * *
34289292 AGGTAAAATGACCATAATACCCTTGTA
1 GGGTAAAATGATCGTAATGCCCTCGTA
* * *
34289319 GGGTAAAATGA-CTGAAAAAT-CTC-CATA
1 GGGTAAAATGATC-G--TAATGCCCTCGTA
*
34289346 GGGTAAAATGATCGTAATGCCC-CTGGA
1 GGGTAAAATGATCGTAATGCCCTC-GTA
34289373 GGGT-AAATGAT
1 GGGTAAAATGAT
34289384 TATTTTTCCC
Statistics
Matches: 235, Mismatches: 57, Indels: 31
0.73 0.18 0.10
Matches are distributed among these distances:
25 4 0.02
26 36 0.15
27 181 0.77
28 11 0.05
29 3 0.01
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (27 bp):
GGGTAAAATGATCGTAATGCCCTCGTA
Found at i:34289138 original size:54 final size:54
Alignment explanation
Indices: 34289066--34289368 Score: 209
Period size: 54 Copynumber: 5.6 Consensus size: 54
34289056 AATGATTGTT
* * *
34289066 ATGCCCTCGTAGGGTAAAATGATCATAATGCCCCCGTAAGGTAGAATGACCGTA
1 ATGCCCCCATAGGGTAAAATGATCATAATGCCCCCGTAAGGTAAAATGACCGTA
** **
34289120 ATGCCCTTATAGGGTAAAATGATCA-AAAACCCCC-TATAGGATAAAATGACCGTA
1 ATGCCCCCATAGGGTAAAATGATCATAATGCCCCCGTA-AGG-TAAAATGACCGTA
* * * * * *
34289174 ATGCCCCCATATGGTAAAATAACCGTAATGCCCCTGTAAGGTAAAATGATCGTA
1 ATGCCCCCATAGGGTAAAATGATCATAATGCCCCCGTAAGGTAAAATGACCGTA
* ** * * * * * * *
34289228 ATTCCCCTGTAGAGTAAAATGACCGA-AA-ACCCTCATAGGGTAAAATGACAGTA
1 ATGCCCCCATAGGGTAAAATGATC-ATAATGCCCCCGTAAGGTAAAATGACCGTA
** * * * ** * * *
34289281 ATGCCCCTGTAAGGTAAAATGACCATAATACCCTTGTAGGGTAAAATGACTGAA
1 ATGCCCCCATAGGGTAAAATGATCATAATGCCCCCGTAAGGTAAAATGACCGTA
*** * *
34289335 AAATCTCCATAGGGTAAAATGATCGTAATGCCCC
1 ATGCCCCCATAGGGTAAAATGATCATAATGCCCC
34289369 TGGAGGGTAA
Statistics
Matches: 195, Mismatches: 47, Indels: 14
0.76 0.18 0.05
Matches are distributed among these distances:
52 3 0.02
53 51 0.26
54 130 0.67
55 9 0.05
56 2 0.01
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.23
Consensus pattern (54 bp):
ATGCCCCCATAGGGTAAAATGATCATAATGCCCCCGTAAGGTAAAATGACCGTA
Found at i:34289199 original size:81 final size:81
Alignment explanation
Indices: 34289075--34289383 Score: 257
Period size: 81 Copynumber: 3.8 Consensus size: 81
34289065 TATGCCCTCG
* * * * * * * *
34289075 TAGGGTAAAATGATCATAATGCCCCCGTAAGGTAGAATGACCGTAATGCCCTTATAGGGTAAAAT
1 TAGGATAAAATGACCGTAATGCCCCCATAAGGTAAAATGACCGTAATGCCCCTGTAAGGTAAAAT
34289140 GATCAAAAACCCCCTA
66 GATCAAAAACCCCCTA
* *
34289156 TAGGATAAAATGACCGTAATGCCCCCATATGGTAAAATAACCGTAATGCCCCTGTAAGGTAAAAT
1 TAGGATAAAATGACCGTAATGCCCCCATAAGGTAAAATGACCGTAATGCCCCTGTAAGGTAAAAT
** ** *
34289221 GATCGTAATTCCCCTG
66 GATCAAAAACCCCCTA
** * * *
34289237 TA-GAGTAAAATGACCG-AAAACCCTCATAGGGTAAAATGACAGTAATGCCCCTGTAAGGTAAAA
1 TAGGA-TAAAATGACCGTAATGCCCCCATAAGGTAAAATGACCGTAATGCCCCTGTAAGGTAAAA
* * * *
34289300 TGACCATAATA-CCCTTG
65 TGATCA-AAAACCCCCTA
* * * *** * * * * *
34289317 TAGGGTAAAATGACTGAAAAATCTCCATAGGGTAAAATGATCGTAATGCCCCTGGAGGGT-AAAT
1 TAGGATAAAATGACCGTAATGCCCCCATAAGGTAAAATGACCGTAATGCCCCTGTAAGGTAAAAT
34289381 GAT
66 GAT
34289384 TATTTTTCCC
Statistics
Matches: 187, Mismatches: 37, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
80 70 0.37
81 117 0.63
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.23
Consensus pattern (81 bp):
TAGGATAAAATGACCGTAATGCCCCCATAAGGTAAAATGACCGTAATGCCCCTGTAAGGTAAAAT
GATCAAAAACCCCCTA
Found at i:34289394 original size:26 final size:27
Alignment explanation
Indices: 34289365--34289415 Score: 77
Period size: 26 Copynumber: 1.9 Consensus size: 27
34289355 GATCGTAATG
*
34289365 CCCCTGGAGGGTAAATGATT-ATTTTT
1 CCCCTCGAGGGTAAATGATTGATTTTT
*
34289391 CCCCTCGAGTGTAAATGATTGATTT
1 CCCCTCGAGGGTAAATGATTGATTT
34289416 GTCTATGATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.37
Consensus pattern (27 bp):
CCCCTCGAGGGTAAATGATTGATTTTT
Found at i:34289437 original size:24 final size:24
Alignment explanation
Indices: 34289405--34289462 Score: 89
Period size: 24 Copynumber: 2.4 Consensus size: 24
34289395 TCGAGTGTAA
*
34289405 ATGATTGATTTGTCTATGATTCGT
1 ATGACTGATTTGTCTATGATTCGT
* *
34289429 ATGACTGATTTGTCTGTGATTTGT
1 ATGACTGATTTGTCTATGATTCGT
34289453 ATGACTGATT
1 ATGACTGATT
34289463 CTGAGCATGG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.21, C:0.09, G:0.22, T:0.48
Consensus pattern (24 bp):
ATGACTGATTTGTCTATGATTCGT
Found at i:34289674 original size:32 final size:32
Alignment explanation
Indices: 34289633--34289833 Score: 181
Period size: 32 Copynumber: 6.3 Consensus size: 32
34289623 GTTGCAATGC
** *
34289633 TACTGATGGCTTTGTACCGATCACGTTATCGT
1 TACTGATGGCTTTGTACCGATCATATTACCGT
** **
34289665 TACTGATGGCTTTGTACTTATCATATTATTGT
1 TACTGATGGCTTTGTACCGATCATATTACCGT
* * *
34289697 TATTGATGGCTTTGTGCTGATCATATTACCGT
1 TACTGATGGCTTTGTACCGATCATATTACCGT
* * *
34289729 T-CTGATAGCTATGTACCGATCATATTACCAT
1 TACTGATGGCTTTGTACCGATCATATTACCGT
* ** * * *
34289760 TACTGATGGCTGTGTGTCGATCATATCACTGC
1 TACTGATGGCTTTGTACCGATCATATTACCGT
* * *
34289792 TACTGATGGCTTTGTGCCAATCATATTACTG-
1 TACTGATGGCTTTGTACCGATCATATTACCGT
*
34289823 TACTTATGGCT
1 TACTGATGGCT
34289834 GGTAGCCATT
Statistics
Matches: 139, Mismatches: 29, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
31 35 0.25
32 104 0.75
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.40
Consensus pattern (32 bp):
TACTGATGGCTTTGTACCGATCATATTACCGT
Found at i:34289832 original size:63 final size:62
Alignment explanation
Indices: 34289665--34289834 Score: 157
Period size: 63 Copynumber: 2.7 Consensus size: 62
34289655 ACGTTATCGT
** * * *
34289665 TACTGATGGCTTTGTACTTATCATATTATTGTTA-TTGATGGCTTTGTGCTGATCATATTACCG
1 TACTGATGGCTTTGTACCAATCATATTACTG-TACTT-ATGGCTGTGTGCTGATCATATCACCG
* * * * * *
34289728 TTCTGATAGCTATGTACCGATCATATTACCAT-TACTGATGGCTGTGTG-TCGATCATATCACTG
1 TACTGATGGCTTTGTACCAATCATATTA-C-TGTACTTATGGCTGTGTGCT-GATCATATCACCG
*
34289791 CTACTGATGGCTTTGTGCCAATCATATTACTGTACTTATGGCTG
1 -TACTGATGGCTTTGTACCAATCATATTACTGTACTTATGGCTG
34289835 GTAGCCATTC
Statistics
Matches: 85, Mismatches: 16, Indels: 12
0.75 0.14 0.11
Matches are distributed among these distances:
62 2 0.02
63 58 0.68
64 24 0.28
65 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.19, T:0.41
Consensus pattern (62 bp):
TACTGATGGCTTTGTACCAATCATATTACTGTACTTATGGCTGTGTGCTGATCATATCACCG
Found at i:34289851 original size:22 final size:22
Alignment explanation
Indices: 34289826--34289890 Score: 58
Period size: 22 Copynumber: 3.0 Consensus size: 22
34289816 ATTACTGTAC
*
34289826 TTATGGCTGGTAGCCATTCTGT
1 TTATGGCTGATAGCCATTCTGT
* * * * *
34289848 TTATAGCTTATAGCTATCCTAT
1 TTATGGCTGATAGCCATTCTGT
* *
34289870 TTACGGCTGTTAGCCATTCTG
1 TTATGGCTGATAGCCATTCTG
34289891 GTTACAGGCA
Statistics
Matches: 30, Mismatches: 13, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.18, C:0.20, G:0.20, T:0.42
Consensus pattern (22 bp):
TTATGGCTGATAGCCATTCTGT
Found at i:34290725 original size:16 final size:17
Alignment explanation
Indices: 34290695--34290727 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
34290685 TTTCAAAAAG
34290695 GGTTTTCAATGAAAACAT
1 GGTTTTCAA-GAAAACAT
34290713 GGTTTTCAA-AAAACA
1 GGTTTTCAAGAAAACA
34290728 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.30
Consensus pattern (17 bp):
GGTTTTCAAGAAAACAT
Found at i:34293233 original size:29 final size:28
Alignment explanation
Indices: 34293199--34293306 Score: 108
Period size: 29 Copynumber: 3.8 Consensus size: 28
34293189 TATTACAGTG
34293199 GCTATCTCAGTTAAATGAATGTCTTTGT
1 GCTATCTCAGTTAAATGAATGTCTTTGT
* * *
34293227 GCCTATCTCTGTTAGATGGATGTCTTTGT
1 G-CTATCTCAGTTAAATGAATGTCTTTGT
* * * * *
34293256 GGTGATCTCTGTTAAATGGATGCCTTTCT
1 GCT-ATCTCAGTTAAATGAATGTCTTTGT
*
34293285 GGCTATCTCAGCTAAATGAATG
1 -GCTATCTCAGTTAAATGAATG
34293307 GTTTGTGGTA
Statistics
Matches: 66, Mismatches: 11, Indels: 5
0.80 0.13 0.06
Matches are distributed among these distances:
28 2 0.03
29 62 0.94
30 2 0.03
ACGTcount: A:0.21, C:0.17, G:0.22, T:0.40
Consensus pattern (28 bp):
GCTATCTCAGTTAAATGAATGTCTTTGT
Found at i:34309410 original size:104 final size:104
Alignment explanation
Indices: 34309228--34309435 Score: 380
Period size: 104 Copynumber: 2.0 Consensus size: 104
34309218 TGCGATCGTG
* *
34309228 AATCATCCTTGTAGGTTTAGAAGTTGGCATCAGTGTAACCTTTTACACTCAGCTTTTCCTACCTT
1 AATCATCCTTGTAGGTTTAGAAGTTGGCATCAGTGTAACCTTTTACACTCAGCTCTTCCTACCCT
* *
34309293 CCATATATGAGGAATGTATCCTTAGTCCTTCACAGGTAC
66 CCATATATAAGGAATGTATCCTTAGTCCTTCACAAGTAC
34309332 AATCATCCTTGTAGGTTTAGAAGTTGGCATCAGTGTAACCTTTTACACTCAGCTCTTCCTACCCT
1 AATCATCCTTGTAGGTTTAGAAGTTGGCATCAGTGTAACCTTTTACACTCAGCTCTTCCTACCCT
34309397 CCATATATAAGGAATGTATCCTTAGTCCTTCACAAGTAC
66 CCATATATAAGGAATGTATCCTTAGTCCTTCACAAGTAC
34309436 TTAAGGATAT
Statistics
Matches: 100, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
104 100 1.00
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.35
Consensus pattern (104 bp):
AATCATCCTTGTAGGTTTAGAAGTTGGCATCAGTGTAACCTTTTACACTCAGCTCTTCCTACCCT
CCATATATAAGGAATGTATCCTTAGTCCTTCACAAGTAC
Found at i:34318956 original size:53 final size:53
Alignment explanation
Indices: 34318890--34319042 Score: 243
Period size: 53 Copynumber: 2.9 Consensus size: 53
34318880 ATGTGGAAGA
*
34318890 GCATTACTTTGTATTTCATCACCTTCGTCTTCTCTAGCATTGACAAATATTCT
1 GCATTACTTTGTATTTCATCACCTTCGTCTTCTCTAGCATTGACAAACATTCT
* * * *
34318943 GCGTTACTTTGTATTTCATCACCTTCATCTTCTCTAGAATTGAGAAACATTCT
1 GCATTACTTTGTATTTCATCACCTTCGTCTTCTCTAGCATTGACAAACATTCT
* *
34318996 GCATTACTTTTTATTTCATCACCTTCGTCTTTTCTAGCATTGACAAA
1 GCATTACTTTGTATTTCATCACCTTCGTCTTCTCTAGCATTGACAAA
34319043 GATTATTCTT
Statistics
Matches: 89, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
53 89 1.00
ACGTcount: A:0.24, C:0.24, G:0.10, T:0.43
Consensus pattern (53 bp):
GCATTACTTTGTATTTCATCACCTTCGTCTTCTCTAGCATTGACAAACATTCT
Found at i:34322191 original size:25 final size:25
Alignment explanation
Indices: 34322157--34322209 Score: 97
Period size: 25 Copynumber: 2.1 Consensus size: 25
34322147 CTATTCATTG
*
34322157 TATTGTGATTAATGATGTTTCTAGT
1 TATTGTGATTAATAATGTTTCTAGT
34322182 TATTGTGATTAATAATGTTTCTAGT
1 TATTGTGATTAATAATGTTTCTAGT
34322207 TAT
1 TAT
34322210 ATATGAATGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.26, C:0.04, G:0.17, T:0.53
Consensus pattern (25 bp):
TATTGTGATTAATAATGTTTCTAGT
Found at i:34328341 original size:17 final size:18
Alignment explanation
Indices: 34328319--34328361 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 18
34328309 TTTTTAATAA
34328319 AACTTTTATAA-TTTTAT
1 AACTTTTATAATTTTTAT
*
34328336 AAC-TTTAAAATTTTTAT
1 AACTTTTATAATTTTTAT
*
34328353 AAATTTTAT
1 AACTTTTAT
34328362 TTATAAATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
16 6 0.29
17 11 0.52
18 4 0.19
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.56
Consensus pattern (18 bp):
AACTTTTATAATTTTTAT
Found at i:34328366 original size:13 final size:13
Alignment explanation
Indices: 34328348--34328374 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
34328338 CTTTAAAATT
34328348 TTTATAAATTTTA
1 TTTATAAATTTTA
34328361 TTTATAAATTTTA
1 TTTATAAATTTTA
34328374 T
1 T
34328375 GGTTTTTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (13 bp):
TTTATAAATTTTA
Found at i:34340403 original size:60 final size:60
Alignment explanation
Indices: 34340299--34340508 Score: 151
Period size: 60 Copynumber: 3.5 Consensus size: 60
34340289 ATACACTAGT
* * * * * *
34340299 TAAAGGATGCCTTTATGGAAAAACTCTGGATAGGAAAGCCTTTGTGGCGAG-AGCTAAATA
1 TAAAAGATGCCTTTGTGGAAAAATTCTAGACAGGAAAACCTTTGTGGCGAGTA-CTAAATA
* * * * *
34340359 TAAATGATGCCTTTGTGGAAAAATTCTAGACA-TAAAACCATTTGTGGTGAGTACTGAATG
1 TAAAAGATGCCTTTGTGGAAAAATTCTAGACAGGAAAACC-TTTGTGGCGAGTACTAAATA
* * * * * *
34340419 TAAAAGATGCCTTTGTAGCAAAAATT-TGGATAGGAAAGA-CTTTGTGGCAAGTACTGAATG
1 TAAAAGATGCCTTTGT-GGAAAAATTCTAGACAGGAAA-ACCTTTGTGGCGAGTACTAAATA
* ** *
34340479 T-AAAGAATGCCCTTGTAAAAAAACTCTAGA
1 TAAAAG-ATGCCTTTGTGGAAAAATTCTAGA
34340509 AAGGTAAGCC
Statistics
Matches: 121, Mismatches: 22, Indels: 14
0.77 0.14 0.09
Matches are distributed among these distances:
59 15 0.12
60 92 0.76
61 13 0.11
62 1 0.01
ACGTcount: A:0.37, C:0.12, G:0.23, T:0.28
Consensus pattern (60 bp):
TAAAAGATGCCTTTGTGGAAAAATTCTAGACAGGAAAACCTTTGTGGCGAGTACTAAATA
Found at i:34340690 original size:28 final size:29
Alignment explanation
Indices: 34340629--34340690 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 29
34340619 AAAACGAAAC
**
34340629 ACCTT-TGTGGAAATCTTTGTCAAAGGAA
1 ACCTTCTGTGGAAATCTTCATCAAAGGAA
*
34340657 AGCTTCTGTGGAAATCTTCAT-AAAGGAA
1 ACCTTCTGTGGAAATCTTCATCAAAGGAA
34340685 ACCTTC
1 ACCTTC
34340691 GTGCCTATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 16 0.55
29 13 0.45
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31
Consensus pattern (29 bp):
ACCTTCTGTGGAAATCTTCATCAAAGGAA
Found at i:34350005 original size:16 final size:16
Alignment explanation
Indices: 34349984--34350014 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
34349974 AATATGGCTA
34349984 GTTTGATCCCTATTGG
1 GTTTGATCCCTATTGG
34350000 GTTTGATCCCTATTG
1 GTTTGATCCCTATTG
34350015 AAAAGAGTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.13, C:0.19, G:0.23, T:0.45
Consensus pattern (16 bp):
GTTTGATCCCTATTGG
Found at i:34350679 original size:31 final size:31
Alignment explanation
Indices: 34350636--34350707 Score: 90
Period size: 31 Copynumber: 2.3 Consensus size: 31
34350626 AAACAAAGTT
* * *
34350636 CGTTGGGACAATAAACACATAATAGATAGTC
1 CGTTAGGACAATAAACACAGAACAGATAGTC
*
34350667 CGTTAGGACAATAAGCACAGAACAGATAGTC
1 CGTTAGGACAATAAACACAGAACAGATAGTC
* *
34350698 CATCAGGACA
1 CGTTAGGACA
34350708 GGAAGCATGT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.42, C:0.19, G:0.21, T:0.18
Consensus pattern (31 bp):
CGTTAGGACAATAAACACAGAACAGATAGTC
Found at i:34351892 original size:14 final size:14
Alignment explanation
Indices: 34351867--34351912 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
34351857 AAGAGTGTGA
34351867 TATTAT-TGATATG
1 TATTATGTGATATG
34351880 TGA-TATGTGATATG
1 T-ATTATGTGATATG
*
34351894 TATTATGTTATATG
1 TATTATGTGATATG
34351908 ATATT
1 -TATT
34351913 GAATATTTGT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
13 5 0.18
14 19 0.68
15 4 0.14
ACGTcount: A:0.30, C:0.00, G:0.17, T:0.52
Consensus pattern (14 bp):
TATTATGTGATATG
Found at i:34360163 original size:90 final size:90
Alignment explanation
Indices: 34360018--34360197 Score: 315
Period size: 90 Copynumber: 2.0 Consensus size: 90
34360008 CACTGCTAAA
*
34360018 CTAACCTCGTCAATATTAAATAAAAATATTTACAGGTTAATTTTATGGAAATGGAGTCACGAATC
1 CTAACCTCGTAAATATTAAATAAAAATATTTACAGGTTAATTTTATGGAAATGGAGTCACGAATC
*
34360083 TCACTATTTGACATCCTGGCTATCG
66 TCACTATTTGACATCCTGACTATCG
*
34360108 CTAACCTTGTAAATATTAAATAAAAATATTTACAGGTTAATTTTATGGAAATGGAGTCACGAATC
1 CTAACCTCGTAAATATTAAATAAAAATATTTACAGGTTAATTTTATGGAAATGGAGTCACGAATC
* *
34360173 TCGCTCTTTGACATCCTGACTATCG
66 TCACTATTTGACATCCTGACTATCG
34360198 GGTTGTTACA
Statistics
Matches: 85, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
90 85 1.00
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.34
Consensus pattern (90 bp):
CTAACCTCGTAAATATTAAATAAAAATATTTACAGGTTAATTTTATGGAAATGGAGTCACGAATC
TCACTATTTGACATCCTGACTATCG
Found at i:34369406 original size:26 final size:23
Alignment explanation
Indices: 34369348--34369395 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
34369338 AATTAGGAGA
34369348 TAGAAATTATTAAAATGTGATTT
1 TAGAAATTATTAAAATGTGATTT
34369371 TAGAAATTATTAAAATGTGATTT
1 TAGAAATTATTAAAATGTGATTT
34369394 TA
1 TA
34369396 TACTTTATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.44, C:0.00, G:0.12, T:0.44
Consensus pattern (23 bp):
TAGAAATTATTAAAATGTGATTT
Found at i:34374463 original size:22 final size:21
Alignment explanation
Indices: 34374423--34374463 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
34374413 AAAGAAGCTC
* *
34374423 GAAATGTCTGATGCGAAAGGG
1 GAAATGTATGATGCCAAAGGG
34374444 GAAATGTATGCATGCCAAAG
1 GAAATGTATG-ATGCCAAAG
34374464 AGCCCAATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.37, C:0.12, G:0.32, T:0.20
Consensus pattern (21 bp):
GAAATGTATGATGCCAAAGGG
Found at i:34380120 original size:13 final size:11
Alignment explanation
Indices: 34380102--34380206 Score: 68
Period size: 10 Copynumber: 10.2 Consensus size: 11
34380092 TCATTTTTCC
34380102 AATAAAATATCAT
1 AATAAAAT-T-AT
34380115 AAT-AAATTAT
1 AATAAAATTAT
*
34380125 AATAAAAATAT
1 AATAAAATTAT
* *
34380136 TA-AAAATTTT
1 AATAAAATTAT
34380146 AA-AAAATTAT
1 AATAAAATTAT
34380156 AA-AAAA-TAT
1 AATAAAATTAT
*
34380165 TA-AAAATT-T
1 AATAAAATTAT
34380174 ATATAAAA-TAT
1 A-ATAAAATTAT
*
34380185 AA-AAATTTAT
1 AATAAAATTAT
34380195 AATAAAA-TAT
1 AATAAAATTAT
34380205 AA
1 AA
34380207 ATTTTTTCTA
Statistics
Matches: 75, Mismatches: 10, Indels: 17
0.74 0.10 0.17
Matches are distributed among these distances:
9 12 0.16
10 39 0.52
11 17 0.23
12 4 0.05
13 3 0.04
ACGTcount: A:0.65, C:0.01, G:0.00, T:0.34
Consensus pattern (11 bp):
AATAAAATTAT
Found at i:34380126 original size:10 final size:9
Alignment explanation
Indices: 34380126--34380332 Score: 80
Period size: 10 Copynumber: 21.6 Consensus size: 9
34380116 ATAAATTATA
34380126 ATAAAAA-T
1 ATAAAAATT
34380134 ATTAAAAATT
1 A-TAAAAATT
*
34380144 TTAAAAAATT
1 AT-AAAAATT
*
34380154 ATAAAAAAT
1 ATAAAAATT
34380163 ATTAAAAATTT
1 A-TAAAAA-TT
34380174 ATATAAAA-T
1 ATA-AAAATT
34380183 ATAAAAATTT
1 ATAAAAA-TT
*
34380193 ATAATAAAAT
1 ATAA-AAATT
**
34380203 ATAAATTTTTT
1 ATAAA--AATT
* *
34380214 CTAAAAATA
1 ATAAAAATT
*
34380223 ATAAAAAAAT
1 AT-AAAAATT
34380233 ATAACACATATT
1 ATAA-A-A-ATT
* *
34380245 A-ATATATT
1 ATAAAAATT
* *
34380253 A-ATATATTT
1 ATA-AAAATT
*
34380262 ATATAAACTT
1 ATA-AAAATT
*
34380272 ATAAATATT
1 ATAAAAATT
*
34380281 ATAAAAATC
1 ATAAAAATT
34380290 ATAAAAACTT
1 ATAAAAA-TT
*
34380300 ATAAATATT
1 ATAAAAATT
34380309 ATAAAAACTT
1 ATAAAAA-TT
*
34380319 ATAAAAATC
1 ATAAAAATT
34380328 ATAAA
1 ATAAA
34380333 CTTATTTTTA
Statistics
Matches: 148, Mismatches: 32, Indels: 37
0.68 0.15 0.17
Matches are distributed among these distances:
8 10 0.07
9 58 0.39
10 61 0.41
11 16 0.11
12 3 0.02
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (9 bp):
ATAAAAATT
Found at i:34380141 original size:9 final size:9
Alignment explanation
Indices: 34380127--34380190 Score: 58
Period size: 9 Copynumber: 6.8 Consensus size: 9
34380117 TAAATTATAA
34380127 TAAAAATAT
1 TAAAAATAT
*
34380136 TAAAAATTT
1 TAAAAATAT
34380145 TAAAAAATTAT
1 T-AAAAA-TAT
*
34380156 AAAAAATAT
1 TAAAAATAT
*
34380165 TAAAAATTT
1 TAAAAATAT
34380174 ATATAAAATA-
1 -TA-AAAATAT
34380184 TAAAAAT
1 TAAAAAT
34380191 TTATAATAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
8 5 0.11
9 21 0.47
10 12 0.27
11 7 0.16
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (9 bp):
TAAAAATAT
Found at i:34380150 original size:19 final size:20
Alignment explanation
Indices: 34380137--34380204 Score: 93
Period size: 20 Copynumber: 3.4 Consensus size: 20
34380127 TAAAAATATT
* *
34380137 AAAAATTTTAAAAAATTATA
1 AAAAATATTAAAAATTTATA
34380157 AAAAATATTAAAAATTTATA
1 AAAAATATTAAAAATTTATA
*
34380177 TAAAATA-TAAAAATTTATA
1 AAAAATATTAAAAATTTATA
34380196 ATAAAATAT
1 A-AAAATAT
34380205 AAATTTTTTC
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
19 12 0.29
20 30 0.71
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (20 bp):
AAAAATATTAAAAATTTATA
Found at i:34380160 original size:20 final size:20
Alignment explanation
Indices: 34380103--34380207 Score: 81
Period size: 20 Copynumber: 5.2 Consensus size: 20
34380093 CATTTTTCCA
* * *
34380103 ATAAAATATCATAATAAATT
1 ATAAAAAATTATAAAAAATT
* *
34380123 ATAATAAAAATATTAAAAATT
1 ATAA-AAAATTATAAAAAATT
*
34380144 TTAAAAAATTATAAAAAA-T
1 ATAAAAAATTATAAAAAATT
* *
34380163 ATTAAAAATTTATATAAAA-T
1 A-TAAAAAATTATAAAAAATT
*
34380183 ATAAAAATTTATAATAAAA-T
1 ATAAAAAATTATAA-AAAATT
34380203 ATAAA
1 ATAAA
34380208 TTTTTTCTAA
Statistics
Matches: 70, Mismatches: 12, Indels: 6
0.80 0.14 0.07
Matches are distributed among these distances:
19 13 0.19
20 43 0.61
21 14 0.20
ACGTcount: A:0.65, C:0.01, G:0.00, T:0.34
Consensus pattern (20 bp):
ATAAAAAATTATAAAAAATT
Found at i:34380161 original size:29 final size:30
Alignment explanation
Indices: 34380113--34380189 Score: 104
Period size: 29 Copynumber: 2.6 Consensus size: 30
34380103 ATAAAATATC
*
34380113 ATAATAAATTATAATAAAAATATTAAAAATTT
1 ATAAAAAATTAT-A-AAAAATATTAAAAATTT
34380145 -TAAAAAATTATAAAAAATATTAAAAATTT
1 ATAAAAAATTATAAAAAATATTAAAAATTT
*
34380174 ATATAAAA-TATAAAAA
1 ATAAAAAATTATAAAAA
34380190 TTTATAATAA
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
29 25 0.60
30 7 0.17
31 10 0.24
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (30 bp):
ATAAAAAATTATAAAAAATATTAAAAATTT
Found at i:34380284 original size:9 final size:9
Alignment explanation
Indices: 34380260--34380332 Score: 74
Period size: 9 Copynumber: 7.8 Consensus size: 9
34380250 ATTAATATAT
*
34380260 TTATATAAAC
1 TTATA-AAAA
*
34380270 TTATAAATA
1 TTATAAAAA
34380279 TTATAAAAA
1 TTATAAAAA
*
34380288 TCATAAAAA
1 TTATAAAAA
*
34380297 CTTATAAATA
1 -TTATAAAAA
34380307 TTATAAAAA
1 TTATAAAAA
34380316 CTTATAAAAA
1 -TTATAAAAA
*
34380326 TCATAAA
1 TTATAAA
34380333 CTTATTTTTA
Statistics
Matches: 53, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
9 32 0.60
10 21 0.40
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (9 bp):
TTATAAAAA
Found at i:34380297 original size:28 final size:29
Alignment explanation
Indices: 34380266--34380325 Score: 104
Period size: 28 Copynumber: 2.1 Consensus size: 29
34380256 ATATTTATAT
34380266 AAACTTATAAATATTATAAAAA-TCATAA
1 AAACTTATAAATATTATAAAAACTCATAA
*
34380294 AAACTTATAAATATTATAAAAACTTATAA
1 AAACTTATAAATATTATAAAAACTCATAA
34380323 AAA
1 AAA
34380326 TCATAAACTT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
28 22 0.73
29 8 0.27
ACGTcount: A:0.62, C:0.07, G:0.00, T:0.32
Consensus pattern (29 bp):
AAACTTATAAATATTATAAAAACTCATAA
Found at i:34380301 original size:19 final size:19
Alignment explanation
Indices: 34380279--34380332 Score: 90
Period size: 19 Copynumber: 2.8 Consensus size: 19
34380269 CTTATAAATA
34380279 TTATAAAAATCATAAAAAC
1 TTATAAAAATCATAAAAAC
* *
34380298 TTATAAATATTATAAAAAC
1 TTATAAAAATCATAAAAAC
34380317 TTATAAAAATCATAAA
1 TTATAAAAATCATAAA
34380333 CTTATTTTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.31
Consensus pattern (19 bp):
TTATAAAAATCATAAAAAC
Found at i:34380331 original size:28 final size:28
Alignment explanation
Indices: 34380266--34380332 Score: 91
Period size: 28 Copynumber: 2.4 Consensus size: 28
34380256 ATATTTATAT
*
34380266 AAACTTATAAATATTATAAAAATCATAA
1 AAACTCATAAATATTATAAAAATCATAA
* *
34380294 AAACTTATAAATATTATAAAAACTTATAA
1 AAACTCATAAATATTATAAAAA-TCATAA
34380323 AAA-TCATAAA
1 AAACTCATAAA
34380333 CTTATTTTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
28 28 0.78
29 8 0.22
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.31
Consensus pattern (28 bp):
AAACTCATAAATATTATAAAAATCATAA
Found at i:34380875 original size:9 final size:10
Alignment explanation
Indices: 34380845--34380887 Score: 63
Period size: 10 Copynumber: 4.5 Consensus size: 10
34380835 ATTAAATTTA
34380845 TTTATAAGTT
1 TTTATAAGTT
34380855 TTTATAAGTT
1 TTTATAAGTT
34380865 TTTATAA-TT
1 TTTATAAGTT
*
34380874 TTTATGA-TT
1 TTTATAAGTT
34380883 TTTAT
1 TTTAT
34380888 TAGAAAAAAG
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
9 15 0.47
10 17 0.53
ACGTcount: A:0.28, C:0.00, G:0.07, T:0.65
Consensus pattern (10 bp):
TTTATAAGTT
Found at i:34380884 original size:18 final size:20
Alignment explanation
Indices: 34380845--34380887 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
34380835 ATTAAATTTA
34380845 TTTATAAGTTTTTATAAGTT
1 TTTATAAGTTTTTATAAGTT
*
34380865 TTTATAA-TTTTTATGA-TT
1 TTTATAAGTTTTTATAAGTT
34380883 TTTAT
1 TTTAT
34380888 TAGAAAAAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 7 0.32
19 8 0.36
20 7 0.32
ACGTcount: A:0.28, C:0.00, G:0.07, T:0.65
Consensus pattern (20 bp):
TTTATAAGTTTTTATAAGTT
Found at i:34388847 original size:36 final size:37
Alignment explanation
Indices: 34388787--34388864 Score: 104
Period size: 36 Copynumber: 2.1 Consensus size: 37
34388777 TTATTACGAA
* * *
34388787 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
* *
34388824 GTCTTA-CCGGAGAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
34388860 GTCTT
1 GTCTT
34388865 TAGAGCTCGA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
36 30 0.83
37 6 0.17
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:34389158 original size:47 final size:47
Alignment explanation
Indices: 34388982--34389378 Score: 479
Period size: 47 Copynumber: 8.7 Consensus size: 47
34388972 CCCTTCGGGA
* * * * * * *
34388982 CTTATCACATTTATACAGTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
34389029 C-TGTCACATATAT--ACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34389073 CTTA--ATCATATAT-CACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCA-CATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
34389118 CTTATCACATATATACACTTTCACGTTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
34389165 CTTATCACATATATACACTTTCACGTTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
34389212 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34389259 CTTATCACATATATATACACTTTCACATTCATCACATCGGCC---A---
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34389302 C--AT---ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
34389344 CTTATCTCATAAATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
34389379 AGAATCCTAA
Statistics
Matches: 310, Mismatches: 20, Indels: 40
0.84 0.05 0.11
Matches are distributed among these distances:
36 32 0.10
39 1 0.00
41 2 0.01
42 1 0.00
43 2 0.01
44 35 0.11
45 36 0.12
46 19 0.06
47 151 0.49
49 31 0.10
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:34389286 original size:18 final size:18
Alignment explanation
Indices: 34389263--34389322 Score: 52
Period size: 18 Copynumber: 3.3 Consensus size: 18
34389253 TTAGGCCTTA
34389263 TCACATATATATACACTT
1 TCACATATATATACACTT
* **
34389281 TCACAT-TCAT-CACATCGG
1 TCACATAT-ATATACA-CTT
*
34389299 CCACATATATATACACTT
1 TCACATATATATACACTT
34389317 TCACAT
1 TCACAT
34389323 TCATCACATC
Statistics
Matches: 30, Mismatches: 8, Indels: 8
0.65 0.17 0.17
Matches are distributed among these distances:
17 4 0.13
18 22 0.73
19 4 0.13
ACGTcount: A:0.35, C:0.28, G:0.03, T:0.33
Consensus pattern (18 bp):
TCACATATATATACACTT
Found at i:34389305 original size:36 final size:36
Alignment explanation
Indices: 34389264--34389337 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
34389254 TAGGCCTTAT
34389264 CACATATATATACACTTTCACATTCATCACATCGGC
1 CACATATATATACACTTTCACATTCATCACATCGGC
34389300 CACATATATATACACTTTCACATTCATCACATCGGC
1 CACATATATATACACTTTCACATTCATCACATCGGC
34389336 CA
1 CA
34389338 TTAGGCCTTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.34, C:0.31, G:0.05, T:0.30
Consensus pattern (36 bp):
CACATATATATACACTTTCACATTCATCACATCGGC
Found at i:34389329 original size:132 final size:134
Alignment explanation
Indices: 34388982--34389378 Score: 454
Period size: 132 Copynumber: 2.9 Consensus size: 134
34388972 CCCTTCGGGA
* * * * *
34388982 CTTATCACATTTATACAGTTTCACATCCATCACGTTGGCCACTCGGCCTGTCACATATAT--ACT
1 CTTATCACATATATACACTTTCACATTCATCACATT-G-CA---GGCCTATCACATATATACACT
34389045 TTCACATTCATCACATCGGCCATTAGGCCTTA--ATCATATATCACTTTCACATTCATCACATCG
61 TTCACATTCATCACATCGGCCATTAGGCCTTATCA-CATATATCACTTTCACATTCATCACATCG
*
34389108 GCCATTAGGC
125 ACCATTAGGC
*
34389118 CTTATCACATATATACACTTTCACGTTCATCACATTGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATT-G-C---AGGCC-TATCACATATATACAC
* *
34389183 TTTCACGTTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
60 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT-CACTTTCACATTCATCACATC
34389248 GACCATTAGGC
124 GACCATTAGGC
*
34389259 CTTATCACATATATATACACTTTCACATTCATCACA-T-C-GGCC-A-CATATATATACACTTTC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGCAGGCCTATCACATATATACACTTTC
* * *
34389319 ACATTCATCACATCGGCCATTAGGCCTTATCTCATAAATGCA-TGTTCACATCCATCACAT
64 ACATTCATCACATCGGCCATTAGGCCTTATCACATATAT-CACT-TTCACATTCATCACAT
34389379 AGAATCCTAA
Statistics
Matches: 232, Mismatches: 17, Indels: 28
0.84 0.06 0.10
Matches are distributed among these distances:
131 1 0.00
132 68 0.29
133 1 0.00
135 4 0.02
136 39 0.17
137 11 0.05
139 35 0.15
140 7 0.03
141 40 0.17
142 1 0.00
143 25 0.11
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (134 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGCAGGCCTATCACATATATACACTTTCAC
ATTCATCACATCGGCCATTAGGCCTTATCACATATATCACTTTCACATTCATCACATCGACCATT
AGGC
Found at i:34393274 original size:40 final size:40
Alignment explanation
Indices: 34393199--34393669 Score: 748
Period size: 40 Copynumber: 11.8 Consensus size: 40
34393189 CCAGCATGAT
* *
34393199 TGCTCTTCGGGACCTAG-CCGGATATA-CACAAAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCAC-TAGCACGAA
** *
34393238 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * * *
34393278 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * * **
34393318 TGCACTTCGGGATTTAACCTAGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
34393358 TGCTCTTCGGAACTTAGTCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
34393398 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
34393438 TGCTCTTCGGGACTTAGTCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
34393478 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
34393518 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
34393558 TGCTCTTCGGGACTTAGCCCGGATATATCATTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
34393598 TGCTCTTCGGGACTTAGCCCAGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
34393638 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
34393670 CTCAATTCTC
Statistics
Matches: 394, Mismatches: 36, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
39 14 0.04
40 377 0.96
41 3 0.01
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:34481181 original size:96 final size:98
Alignment explanation
Indices: 34481041--34481227 Score: 229
Period size: 104 Copynumber: 1.9 Consensus size: 98
34481031 GAATAGTGAT
** *
34481041 GGTTGGAATTTTGTTGTTGGTGAAAGACCGGATTATG-T-CCAATGT-GGTTCAACTATGAAAGC
1 GGTTGGAATTTTGTTGTTGGTGAAAGACCGGACCAGGATCCCAATGTGGGTTCAACTATGAAAGC
34481103 TTGAGAAGATGATA-GAAAAGGAATTATTGATGG
66 -TGAGAAGATGATAGGAAAAGGAATTATTGATGG
* * *
34481136 GGTTGGAATTTTTTTGTTGGGTGAAAGACCGGACCGGGATTAATGTCCAATGTGGGTTCAACTAT
1 GGTTGGAATTTTGTTGTT-GGTGAAAGACCGGACCAGG----AT-CCCAATGTGGGTTCAACTAT
34481201 GAAAGCTGAGAAGATGATAGGAAAAGG
60 GAAAGCTGAGAAGATGATAGGAAAAGG
34481228 TTGTTAACCT
Statistics
Matches: 77, Mismatches: 5, Indels: 11
0.83 0.05 0.12
Matches are distributed among these distances:
95 17 0.22
96 15 0.19
101 1 0.01
103 20 0.26
104 24 0.31
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (98 bp):
GGTTGGAATTTTGTTGTTGGTGAAAGACCGGACCAGGATCCCAATGTGGGTTCAACTATGAAAGC
TGAGAAGATGATAGGAAAAGGAATTATTGATGG
Found at i:34484961 original size:98 final size:98
Alignment explanation
Indices: 34484792--34484990 Score: 362
Period size: 98 Copynumber: 2.0 Consensus size: 98
34484782 AATTACTTTG
*
34484792 AGGAATAGTGATGGATTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTCATGTCCAATGTGGC
1 AGGAATAGTGATGGATTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGC
34484857 TTCAACTATGAAAGCTGAGAAGATGATAGAAAA
66 TTCAACTATGAAAGCTGAGAAGATGATAGAAAA
* *
34484890 AGGAATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGG
1 AGGAATAGTGATGGATTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGC
*
34484955 TTCAACTATGAAAGCTGAGAAGATGATAGGAAA
66 TTCAACTATGAAAGCTGAGAAGATGATAGAAAA
34484988 AGG
1 AGG
34484991 TTGTTAACCT
Statistics
Matches: 97, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 97 1.00
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (98 bp):
AGGAATAGTGATGGATTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGC
TTCAACTATGAAAGCTGAGAAGATGATAGAAAA
Found at i:34487139 original size:616 final size:616
Alignment explanation
Indices: 34477349--34492613 Score: 21217
Period size: 616 Copynumber: 24.6 Consensus size: 616
34477339 NNNNNNNATG
34477349 GGAATAGTTGATGGG-T-GAAA--TTTGTTGTTGGTGAAAGACCGGGATTAATGGTCCAATGTGG
1 GGAATAG-TGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAAT-GTCCAATGTGG
* * * *
34477410 GTTCAACTATGAAAGCTGAGAAGATGA-AGGGAAAATGTTGTTAACCTTACTT-GCTTAAATGAT
64 TTTCAACTATGAAAGCTGAGAAGATGATA-GGAAAAGGTTGTGAACCTTACTTAGCTTATATGAT
*
34477473 AAATTCAGTTTAGTAAGGATTTTGAAGAGTTCAGGATATTCTCGACGGTTAAGGATTCTTTCTAA
128 AAATTCAG-TTAGTAAGGA-TTTG-AGAGTTCAGGATATTCTC-ACGGTTAAGGATTC-TCCTAA
* *
34477538 CGTGTTT-CTG-AAAGTTGTCTGGGATTTACCACCAGACATTGAAGAT-AGTTTAGTATT-AGAT
188 CGTGTTTCCTGAAAAGTTGTCT-GG-TTTACCACCAGACA-TGAAGTTGAGTTTAGTATTAAGCT
* * *
34477599 -CAACA-GGTA-TGCACAGTATGCATTGCGACCTTTAGCATGACACCAAAAG-G-TCAAGGAGTT
250 CCATCATGGTATTGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTT
* *
34477659 AAAGATTTAGTTTCAA-AGTTCCTTAATAGAAGGTTAATTCGA-CGAGTTGTATCTATGTA-GGT
315 AAAGATTTAGTTTCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAG-TGTATCTCTGTAGGGT
* *
34477721 GGCACCAG-TTTGTTTGTTTGATTGAAGAAGGAATGTCTTACGATGCTATGTATATTGTTATTAG
379 -GCACCAGTTTTGTTTG--TGA-AGAAGAAGG-ATG--GTACGATGC-A-G-ATA-TGTTATTAG
*
34477785 TTCCTTTGGTGATACTGTGGAAGTGAATAAAATTTATTGTAGATG-CCCATTATGGTTCAAGGGC
433 TTCCTTTGGTGATAGTGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGGTTCAAGGGC
34477849 ACATTTTCTCTATTGATCG-ATGGAATTTTT-TTCTTACGGTTTTATGTGATTCTTGGTATGGAC
498 ACATTTTCTCTATTGATCGTATGGAATTTTTGTTC-TACGGTTTTATGTGATTCTTGGTATGGAC
* *
34477912 TTGTTTTAGTGAGCATAAGGCT-AGGTAGATTTTGAGATGAAACGAA-TACTTTGA
562 -TGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGA
*
34477966 GGAATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGATCGGGATTAATGTCCAATGTGGTT
1 GGAATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTT
34478031 TCAACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAA
66 TCAACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAA
*
34478096 TTCAATTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTC
131 TTCAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTC
34478161 CTGAAAAGTTGTCTGGTTTACCACCAGACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTA
196 CTGAAAAGTTGTCTGGTTTACCACCAGACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTA
34478226 -TGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGT
261 TTGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGT
* *
34478290 TTCAAGAGTTCCTTAATAGAAGGTTCATTCGACCCAGTGTATCTCTGTAAGGTGCACCAGTTTTG
326 TTCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTTG
34478355 TTTGTGAAGAAGAAGGATGGTACGATGCAGATATGTTATTAGTT-CTTTGGTGATAGTGTGGAAG
391 TTTGTGAAGAAGAAGGATGGTACGATGCAGATATGTTATTAGTTCCTTTGGTGATAGTGTGGAAG
34478419 TGAATAAAATTT-TCTGTAGATG-CCCATTATGGTTC-AGGGCACATTTTCTCTATTGATCGTAT
456 TGAATAAAATTTAT-TGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGATCGTAT
34478481 GGAATTTTTGTTCTAC-GTTTTATGTGATTCTTGGTATGGACTGTGGTTGAGTGAGCATAAGGCT
520 GGAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGAC--TGGTTGAGTGAGCATAAGGCT
*
34478545 AAGGTAGATTTTGAGATGAAACTAATTACTTTGA
583 AAGGTAGATTTTGAGATGAAACGAATTACTTTGA
34478579 GGGAATAGTGATGGGTTGGAAA--TTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGT
1 -GGAATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGT
* *
34478642 TTCAACTATGAAAGCTGAGAAAATGATAGGAAGAGGTTGTGAACCTTACTTAGCTTATATGATAA
65 TTCAACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAA
34478707 ATTCAGTTAGTAAGGATTTGAGAGTTC-GG---TTCTCACGGTTTAAGGATTTCTCCTAACGTGT
130 ATTCAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGG-TTAAGGA-TTCTCCTAACGTGT
* *
34478768 TT-CTGTGAAAGTTGTCTGGTTTGACCGCCAGGACA-GAAGTTGAGTAGTTAGTATTAAGCTCCA
193 TTCCTG-AAAAGTTGTCTGGTTT-ACCACCA-GACATGAAGTTGAGT--TTAGTATTAAGCTCCA
* *
34478831 TCATGGTATTGCACAGTGTGTATTGCGACC-ATAGCATGGACACCCAAAGAGGCTCAA-GAGTTA
253 TCATGGTATTGCACAGTGTGCATTGCGACCTATAGCAT-GACACCAAAAGA-GCTCAAGGAGTTA
* * * *
34478894 AAGATTTAGTTTC---AGTT-TTTAATAGAAGGGTTCATTCCACGGAGTGTACCTCTGTAGGAGT
316 AAGATTTAGTTTCAAGAGTTCCTTAATAGAA-GGTTCATTCGACCGAGTGTATCTCTGTAGG-GT
*
34478955 GCACCAG-TTTGTTGGTGGAAGAAGAAGGATGGTACGATGCA-ATATGTTAATTAGTTTCC-TTG
379 GCACCAGTTTTGTTTGT-GAAGAAGAAGGATGGTACGATGCAGATATGTT-ATTAG-TTCCTTTG
*
34479017 GT-ATAGTG-GAAAG-GAATAAAA-TTATTGTAAGATGTCCCCATTATGGTTCAAGGGCACATTT
441 GTGATAGTGTGGAAGTGAATAAAATTTATTGT-AGATGT-CCCATTATGGTTCAAGGGCACATTT
* *
34479078 TCTCTATTGATCGT-T-GAATTTTTGTTCTAC-GATTTATGTGATTTCTTGGTTATGGATTGGTT
504 TCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGA-TTCTTGG-TATGGACTGGTT
34479140 GAGTGAGCATAAGGCTAAGGTAGATTTTTGAGATGAAACGAATTACTTTGA
567 GAGTGAGCATAAGGCTAAGGTAGA-TTTTGAGATGAAACGAATTACTTTGA
*
34479191 GGAATAGTGATTGGGTTGG-AATTTTTG-TG-TGGTGAAAGACC-GGATTAATGTCCAATGTGGC
1 GGAATAGTGA-TGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGT
*
34479252 TTCAACTATG-AAGCTGAGAAGATGATA-GAAAAGGTTATGAACC-TACTTAG-TTATATGAT-A
65 TTCAACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAA
*
34479312 ATTCAG-TAGTAAGGATTTTGAGAGTTCAGGA-ATTCTCACGGAT-AGGATTCTCCTAACG-GTT
130 ATTCAGTTAGTAAGGA-TTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTT
*
34479373 TCCTGAAAAGTTGTTCTGG-TTA-CACCAGACATGAAGCTTG-G-TTAGTATTATGCTCCATCAT
194 TCCTGAAAAGTTG-TCTGGTTTACCACCAGACATGAAG-TTGAGTTTAGTATTAAGCTCCATCAT
* *
34479434 -GTATTGCACAAGTGTGTTATTGCGACCTATAGCATGACACCCAAAAGAGCTTAAGGAGTTAAAG
257 GGTATTGCAC-AGTGTG-CATTGCGACCTATAGCATGACA-CCAAAAGAGCTCAAGGAGTTAAAG
* * *
34479498 A-TT-GTTTCAAGATTTTCTTTAATAG-AGGTTTCATTTCGACCGGAGGTGTACCTCTGT-GGGT
319 ATTTAGTTTCAAGA-GTTCCTTAATAGAAGG-TTCA-TTCGACC-GA-GTGTATCTCTGTAGGGT
34479559 GCCACCAGTTTTGTTTGTGAAGAAGAAGGATGGTACGATGCAGATATGTTATTAGTTCCTTTGGT
379 G-CACCAGTTTTGTTTGTGAAGAAGAAGGATGGTACGATGCAGATATGTTATTAGTTCCTTTGGT
34479624 GATTAGTGTGGAAAGTGAAT--AATTTATTGTAGATGTCCCATTATGGTTCAAGGGCCACATTTT
443 GA-TAGTGTGG-AAGTGAATAAAATTTATTGTAGATGTCCCATTATGGTTCAAGGG-CACATTTT
* *
34479687 CTCTATTGATCGTATGGAA-TTTTGTTCTACGGTTTTGT-TGATTCTTGGTATGGACTTGTTTGA
505 CTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGAC-TGGTTGA
*
34479750 GAGAGCATAAGG-TAAGGTAGATTTTGAGATGAAACGAATTACTTTGA
569 GTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGA
*
34479797 GGAATAGTGATGGGTTGTGGAAATTTTTGTTGTTGGTGAGAAGATCGCAGGATTAATGTCC-ATG
1 GGAATAGTGATGGG-T-TGGAAATTTTTGTTGTTGGTGA-AAGA-C-CGGGATTAATGTCCAATG
34479861 TGGGTTTCAACTATG-AAGCTTGAG-AGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATA
61 T-GGTTTCAACTATGAAAGC-TGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATA
34479924 TTGATAAATTCAAGTTATGT-AGGA--TGAGAGTTCAGGATATTCTCACGG-TAAGGATTCTCCT
124 -TGATAAATTC-AGTTA-GTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCT-C-
34479985 TCTAACGTGTTTCCTGAAAATGTTGTCTGGTTTACCACCAGACATGAAGTTGAGTTTAGTATTAA
184 -CTAACGTGTTTCCTGAAAA-GTTGTCTGGTTTACCACCAGACATGAAGTTGAGTTTAGTATT-A
* *
34480050 AGCTCCATCATGGTACTGCACAGTGTGCATTG-GACCAATAAGCATGACACCAAAAGAGCTCAAG
246 AGCTCCATCATGGTATTGCACAGTGTGCATTGCGACCTAT-AGCATGACACCAAAAGAGCTCAAG
*
34480114 GAGTTAAAGATTTAGTTTCAAGAGTTCCTTAATAGAAGGGTTCATTCGACCCAGTGTATCT-TGT
310 GAGTTAAAGATTTAGTTTCAAGAGTTCCTTAATAGAA-GGTTCATTCGACCGAGTGTATCTCTGT
* * *
34480178 A-GCTGCACCAGTTTTGTTTTTTGTGAAGAAGAA-GATGGTAGGATGCCATATTATGTTATTAGT
374 AGGGTGCACCAGTTTTG---TTTGTGAAGAAGAAGGATGGTACGATG-CAGA-TATGTTATTAGT
34480241 TCCTTTGGTGATA-TGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGGTTCAAGGGCA
434 TCCTTTGGTGATAGTGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGGTTCAAGGGCA
34480305 CATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACTG
499 CATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACTG
34480370 GTTGAGTGAGCATAAGGCTAA--TAGATTTTGAGATGAAACGAATTACTTTGA
564 GTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGA
34480421 GGAATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACC-GGATTAATGTCCAATGGTGGT
1 GGAATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAAT-GTGGT
34480485 TTCAACTATGAAAGCTGAG-AG-TGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAA
65 TTCAACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAA
*
34480548 ATTCA-TTAGTAAGGATTTTAGAGTTCAGGATATTCTCACGGTTAAGGATTTCTCCTAACGTG-T
130 ATTCAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGA-TTCTCCTAACGTGTT
*
34480611 TCCTGGAAAAGTTGTCTTGTTT--CACCAGACATGAAGTTGAGTTTAGTATTAAGCTCCATCATG
194 TCCT-GAAAAGTTGTCTGGTTTACCACCAGACATGAAGTTGAGTTTAGTATTAAGCTCCATCATG
*
34480674 GTACTGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTC-AGGAGTTAAAGATTT
258 GTATTGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTT
* *
34480738 AGTTTCAAGAG-TCCTTAATAGAAGGTTCATTCGACCCAGTGTATCTCTGTAAGGTGCACCAGTT
323 AGTTTCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTT
34480802 TTGTTTGTTGAAGAAGAAGGAT-GTACGATGCAGATAT-TTATTAGTTCCTTTGGTGAT-G-GTG
388 TTGTTTG-TGAAGAAGAAGGATGGTACGATGCAGATATGTTATTAGTTCCTTTGGTGATAGTGTG
34480863 GAAGTGAAT-AAATTTATTGTAGATGTCCCCATTATGGTTCAAGGGCACATTTTCTCTATTGATC
452 GAAGTGAATAAAATTTATTGTAGATGT-CCCATTATGGTTCAAGGGCACATTTTCTCTATTGATC
34480927 GTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACTGGTTGCATGTGAGCATAA
516 GTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACTGGTTG-A-GTGAGCATAA
* *
34480992 GGCTTAAGGTAGA-TTTGGGATGAAA-AACATTACTTTGA
579 GGC-TAAGGTAGATTTTGAGATGAAACGA-ATTACTTTGA
34481030 GGAATAGTGAT-GGTTGG-AA-TTTTGTTGTTGGTGAAAGACC-GGATT-ATGTCCAATGTGG-T
1 GGAATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTT
* ** * **
34481089 TCAACTATGAAAGCTTGAGAAGATGATA-GAAAAGGAAT-T--A--TTGA-TGGGGTTGGA--AT
66 TCAACTATGAAAGC-TGAGAAGATGATAGGAAAAGG-TTGTGAACCTT-ACTTAGCTTATATGAT
** ** * * ** * * * ** **
34481145 -TTTTTTGTTGGGTGAAAGA-CCG-GA--CCGGGATTAATGTC-CAATGTGGGTTCAACTATGAA
128 AAATTCAGTT-AGT-AAGGATTTGAGAGTTCAGGA-T-AT-TCTC-A---CGGTT-AAGGAT-TC
** * * ** *** * * ** * * *
34481204 AGCTGAGAAGATG-AT-AGGAAAAGGTTGT-TAACCTTACTTAGCTTAAATGATAAATTCAGTTA
182 TCCT-A-ACG-TGTTTCCTGAAAA-GTTGTCT-GGTTTAC-CACCAGACATG--AAGTTGAGTT-
* * * * * * **
34481266 GTAAGGATTTGAGAG-T---TCA-GGATATTCTCACGGT-TAAGGATT-C-TCCTA-A-CGTGTT
238 -T-AGTA-TT-A-AGCTCCATCATGG-TATT-GCACAGTGT--GCATTGCGACCTATAGCATGAC
* * ** * *
34481321 TCCTGAAAAGTTGTCTGGTTTACCACCA-GACATGAAGTTAGTTTAGTATT-AAGA-TCAATCAT
294 ACC--AAAAG-AG-C-----T--CA--AGGAGTTAAAG--A-TTTAGT-TTCAAGAGT---TCCT
* * * * * *** * * ** **
34481383 GGT-ATTGCACAGTGTGCATTGCGACCTA-TAGCATGACACCAAAGAGTTCAAGGAGTTAAAGAT
339 --TAATAG-A-AG-GTTCATT-CGACCGAGT-GTAT--CTCTGTAGGGTGC-ACCAGTT-TTG-T
* * * ** **
34481446 TTAGTTTCAAGAGTTCCTTAATAGAAGGTTCATTCG-ACCGAGTGTATCTATGTAGGGTGCACCA
392 TT-G--T-GA-AG-------A-AGAAGG---A-TGGTA-CGA-TGCAGATATGT----T--ATTA
* * * * * *
34481510 GTT-TTTTGTTTGATGAAGAAGGATGTACGATGCAGATATGTTATTAGTTCCTTTGGTGATAGTT
432 GTTCCTTTG-GTGAT--AG--TG-TGGAAG-TG-A-ATA----A--A------AT--T--TA-TT
*
34481574 GTGGAAGTGAATAAAATTTATTGTAGATGTCCATTATGGTTCAAGGGCACATTTTCTCTATTGAT
471 GT---A--G----------A---T-G-T-CCCATTATGGTTCAAGGGCACATTTTCTCTATTGAT
34481639 CGTATGGAA-TTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACTGGTTGA-TGAGCATAAG
515 CGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACTGGTTGAGTGAGCATAAG
34481702 GCTAAGGTAGA-TTTGAGATGAAACGAATTACTTTGA
580 GCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGA
*
34481738 GGAATAGTGATGGGTTGGAAATTTTTGTTGTTGGTG-AAGACC-GGATTAATGTCCAATGTGGGT
1 GGAATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTT
34481801 TCAACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAA
66 TCAACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAA
*
34481866 TTCAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGATAAGGATTCTCCTAACGTGTTTC
131 TTCAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTC
34481931 CTGAAAAGTTGTCTGGTTTACCACCAGACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTA
196 CTGAAAAGTTGTCTGGTTTACCACCAGACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTA
* *
34481996 TTGCACAGTGTGTATTGCGACCTATAGCATGACACCAAAAGAGCT-AAGGAGTTAAAGATTTTGT
261 TTGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGT
* *
34482060 TTCAAGATTTTCTTAATAGAAGGTTCATTCGACCGAGTGTA-C-CTGTAGGGTGCACCAGTTTTG
326 TTCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTTG
34482123 TTTGTGAAGAAGAAGGATGGTACGATGCAGATATGTTATTAGTTCCTTTGGTGATAGTGTGGAAG
391 TTTGTGAAGAAGAAGGATGGTACGATGCAGATATGTTATTAGTTCCTTTGGTGATAGTGTGGAAG
*
34482188 TGAATAAAATTTATTCTAGATG-CCCATTATGGTTCAAGGGCACATTTTCTCTATTGATCGTATG
456 TGAATAAAATTTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGATCGTATG
*
34482252 GAATTTTTGTTCTACGATTTTATGTGATTCTTGGTATGGACTGG-T---TGAGCATAAGGCTAAG
521 GAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACTGGTTGAGTGAGCATAAGGCTAAG
34482313 GTAGATTTTGAGATGAAACGAATTACTTTGA
586 GTAGATTTTGAGATGAAACGAATTACTTTGA
*
34482344 GGAATAGTGATGGGTTGGAAA-TTTTGTTGTTGGTGAAAGA-CTGGATTAATGTCCAATGTGGTT
1 GGAATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTT
*
34482407 TCAACTA-GAAAGCTGAGAAGATGATAGG-AAAGGTTGTGAACCTTACCTAGCTTATATGATAAA
66 TCAACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAA
34482470 TTCAGTTAGTAAGGATTTGAGAGTTCAGG--ATTCTCACGGTTAAGGATTCTCCTAACGTGTTTC
131 TTCAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTC
*
34482533 CTGAAAAGTTGTCTGGTTTACCGCCAGACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTA
196 CTGAAAAGTTGTCTGGTTTACCACCAGACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTA
*
34482598 TTGCACAGTGTGTATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGT
261 TTGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGT
** * * * *
34482663 TTCAAGTTTTTCTTAATAGAAGGTTCATTCCACGGAGTGTACCTCTGTAGGGTGCACCAGTTTTG
326 TTCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTTG
34482728 TTTGTGAAGAAGAAGGATGGTACGATGCAGATATGTTATTAGTTCCTTTGGTGATA--GTGGAAG
391 TTTGTGAAGAAGAAGGATGGTACGATGCAGATATGTTATTAGTTCCTTTGGTGATAGTGTGGAAG
34482791 TGAATAAAATTTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGATCGTATG
456 TGAATAAAATTTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGATCGTATG
* *
34482856 GAATTTTTGTTCTACGATTTTATGTGATTCTTGGTATGGATTGGTTGAGTGAGCATAAGGCTAAG
521 GAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACTGGTTGAGTGAGCATAAGGCTAAG
34482921 GTAGATTTTGAGATGAAACGAATTACTTTGA
586 GTAGATTTTGAGATGAAACGAATTACTTTGA
*
34482952 GGAATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGCT
1 GGAATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTT
*
34483017 TCAACTATG-AAGCTGAGAAGATGATAGGAAAAGGTTATGAACCTTACTTAGCTTATATGATAAA
66 TCAACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAA
*
34483081 TTCAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGATAAGGATTCTCCTAACGTGTTTC
131 TTCAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTC
*
34483146 CTGAAAAGTTGTCTGGTTTACCACCAGACATGAAGTTGAGTTTAGTATTATGCTCCATCATGGTA
196 CTGAAAAGTTGTCTGGTTTACCACCAGACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTA
*
34483211 TTGCACAGTGTGTATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGT
261 TTGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGT
* *
34483276 TTCAAGA-TTTCTTAATAGAAGGTTCATTCGACCGAGTGTACCTCTGTAGGGTGCACCAGTTTTG
326 TTCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTTG
*
34483340 TTTGTGAAGAAGAAGGATGGTACGATGCAGATATGTTATTAGTTCCTTTGGTGATAGTGTGAAAG
391 TTTGTGAAGAAGAAGGATGGTACGATGCAGATATGTTATTAGTTCCTTTGGTGATAGTGTGGAAG
34483405 TGAATAAAATTTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGATCGTATG
456 TGAATAAAATTTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGATCGTATG
*
34483470 GAA-TTTTGTTCTACGGTTTTATGTGATTCTTGGTAT-GACTGGTTGAGTGAGCATAAGGGTAAG
521 GAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACTGGTTGAGTGAGCATAAGGCTAAG
34483533 GTAGATTTTGAGATGAAACGAATTACTTTGA
586 GTAGATTTTGAGATGAAACGAATTACTTTGA
*
34483564 GGAATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGGT
1 GGAATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTT
*
34483629 TCAACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTAATTAGCTTATATGATAAA
66 TCAACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAA
*
34483694 TTCAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGATAAGGATTCTCCTAACGTGTTTC
131 TTCAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTC
* *
34483759 CTGAAATGTTGTCTGGTTTACCACCAGAACATGAAGTTGAGTTTAGTATTAAGCTCCATCATAGT
196 CTGAAAAGTTGTCTGGTTTACCACCAG-ACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGT
* * * *
34483824 ATTGCACAGTGTGTATTGTGACCAATAGCATGACATCAAAAGAGCTCAAGGAGTTAAAGATTTAG
260 ATTGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAG
* *
34483889 TTTCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTATGTAGGATGCACCAGTTTT
325 TTTCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTT
*
34483954 GTTTGTGAAGAAGAAGGATGGTATGATGCAGATATGTTATTAGTTCCTTTGGTGATAGTGTGGAA
390 GTTTGTGAAGAAGAAGGATGGTACGATGCAGATATGTTATTAGTTCCTTTGGTGATAGTGTGGAA
34484019 GTGAATAAAATTTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGATCGTAT
455 GTGAATAAAATTTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGATCGTAT
*
34484084 GGAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGAACTGGTTGAGTGAGCATAAGGCTAA
520 GGAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACTGGTTGAGTGAGCATAAGGCTAA
*
34484149 TGTAGATTTTGAGATGAAACGAATTACTTTGA
585 GGTAGATTTTGAGATGAAACGAATTACTTTGA
*
34484181 GGAATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGCT
1 GGAATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTT
34484246 TCAACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAA
66 TCAACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAA
*
34484311 TTCAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGTTTCTCCTAACGTGTTTC
131 TTCAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTC
* *
34484376 CTGAAAAGTTGTCTAGTTTAGCACCAGAACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGT
196 CTGAAAAGTTGTCTGGTTTACCACCAG-ACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGT
* * *
34484441 ATTGCACATTGTGCAATGCGACCTATAGCATGACACGAAAAGAGCTCAAGGAGTTAAAGATTTAG
260 ATTGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAG
*
34484506 TTTCAAGAGTTCCTTAATAGAAGGTGCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTT
325 TTTCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTT
* *
34484571 GTTTGTGAAGAAGAACGATGGTACGATGCAGATATGTTATTAGATCCTTTGGTGATAGTGTGGAA
390 GTTTGTGAAGAAGAAGGATGGTACGATGCAGATATGTTATTAGTTCCTTTGGTGATAGTGTGGAA
34484636 GTGAATAAAATTTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTT-TCTATTGATCGTAT
455 GTGAATAAAATTTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGATCGTAT
34484700 GGAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACTGGTTGAGTGA-CATAAGGCTAA
520 GGAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACTGGTTGAGTGAGCATAAGGCTAA
34484764 GGTAGATTTT--GATGAAA-GAATTACTTTGA
585 GGTAGATTTTGAGATGAAACGAATTACTTTGA
* * *
34484793 GGAATAGTGATGGATTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTCATGTCCAATGTGGCT
1 GGAATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTT
* * *** * * *
34484858 TCAACTATGAAAGCTGAGAAGATGATAGAAAAAGGAATAGTGATGGGTTGGAAATTTTTG-TTGT
66 TCAACTATGAAAGCTGAGAAGATGATAGGAAAAGG--TTGTGA-ACCTT----A-CTTAGCTTAT
* ** * ** * * * ** * * * *
34484922 -TGGTGAAAGACCGGGATTAATGTCCAATGTG-G-GTTCA--ACTA-T-GAAAGCTGAGAAGATG
123 ATGAT-AAATTCAGTTAGTAA-G---GATTTGAGAGTTCAGGA-TATTCTCACGGTTA-AGGAT-
***** * * * ** * * * ** * ** * *
34484980 ATAGGAAAAGGTTGTTAACCTTACTTAGCTTATATGATAAATTCAGTTAGTA-A-GGATTTGAGA
180 -TCTCCTAACG-TGTT-TCCTGA-AAAG-TTGTCTGGTTTA-CCA-CCAG-ACATGAAGTT--GA
* * ** * * * * ** * * ** *
34485043 GTTCAGGA-TATTCTCACGGTTAAGG-ATT-CTTCTAACGTG-TTTCCTGA-AAAGTTGTC-TGG
235 GTTTAGTATTAAGCTC-C-ATCATGGTATTGC-AC-AGTGTGCATTGC-GACCTA-TAG-CAT-G
** ** * * * * * *
34485102 TTTACCACCAGA---CATGAAGTT-TAG-TTTAGTATT-AACA--TCCATCATCGTATTGCACAG
292 -ACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGT-TTCAAGAGTTCC-T--T--AATAG-A-AG
* * * * *** * * ** ** *
34485159 TGTGCATTGCGACCTA-TAGCATGACACCAAAAGAGTTCAAGGAGTTAAAGATTTAGTTTCAAGA
348 -GTTCATT-CGACCGAGT-GTAT--C-TCTGTAGGGTGC-ACCAGTT-TTG-TTT-G--T-GA-A
* * ** * ** *
34485223 GTTCCTTAATAGAAGGTTCATTCG-ACCGAGTGTATCTATGTAGGGTGCACTAGTTTTTTTTGTG
399 G-------A-AGAAGG---A-TGGTA-CGA-TGCAGATATGT----T--ATTAGTTCCTTTGGTG
* * * * * * ** **
34485287 ATGAAGAAGGATGGTACGATGCA-GATATGTGA-T-TAG-T-TCCTTTGGTGATAGTGTGGAAGT
444 AT--AG--TG-TGG-AAG-TGAATAAAAT-TTATTGTAGATGTCCCAT--T-AT-G-GTTCAAG-
** * * * * * * * * **
34485347 GAATAAAATTTAT-TGTAGATG-TCCCATTATGGTTCAAGGGCACATTTT-CTCTATTGATCGTA
495 G--GCACATTT-TCTCTA-TTGAT--C-GTATGG----A----A-TTTTTGTTCTA-CGGTTTTA
* * ** * * * * * *
34485409 TGTAATT-TTTGT-TCTAC-GGTTTTATGTGATTC-T-TGG-TATGG-ACTGGTTGAGTGAGCAT
543 TGTGATTCTTGGTATGGACTGG-TTGA-GTGA-GCATAAGGCTAAGGTA--GATT--TTGAG-AT
* * * *
34485467 -AAGGCTAAGGTAGATTTTGA
600 GAA-ACGAA--T-TACTTTGA
* * *
34485487 GATGAAATGAATTACTTTAAGGAATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGG
1 G--G-AAT-AGTGA---T--GG----GT--T-GG--A--AATTTTTGTTGTTGGTGAAAGACCGG
* *
34485552 GATTAATGTCCAATGTGGGTTCAACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTTAACCT
46 GATTAATGTCCAATGTGGTTTCAACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCT
34485617 TACTTAGCTTATATGATAAATTCAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAA
111 TACTTAGCTTATATGATAAATTCAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAA
* *
34485682 GGATTCTTCTAACGTGTTTCCTGAAAAGTTGTCTGGTTTACCACCAGACATGAAGTTTAGTTTAG
176 GGATTCTCCTAACGTGTTTCCTGAAAAGTTGTCTGGTTTACCACCAGACATGAAGTTGAGTTTAG
* * *
34485747 TATTAAGATCAATCATGGTATTGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGTT
241 TATTAAGCTCCATCATGGTATTGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCT
*
34485812 CAAGGAGTTAAAGATTTAGTTTCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTA
306 CAAGGAGTTAAAGATTTAGTTTCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTC
*
34485877 TGTAGGGTGCACCAGTTTTGTTTGTGATGAAGAAGGATGGTACGATGCAGATATGTTATTAGTTC
371 TGTAGGGTGCACCAGTTTTGTTTGTGAAGAAGAAGGATGGTACGATGCAGATATGTTATTAGTTC
34485942 CTTTGGTGATAGTGTGGAAGTGAA-AAAATTTATTGTAGATGTCCCATTATGGTTCAAGGGCACA
436 CTTTGGTGATAGTGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGGTTCAAGGGCACA
34486006 TTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACTGGT
501 TTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACTGGT
34486071 TGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGA
566 TGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGA
*
34486122 GGAATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGGT
1 GGAATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTT
34486187 TCAACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAA
66 TCAACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAA
34486252 TTCAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTC
131 TTCAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTC
34486317 CTGAAAAGTTGTCTGGTTTACCACCAGACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTA
196 CTGAAAAGTTGTCTGGTTTACCACCAGACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTA
* * *
34486382 TTGCACAGTGTGTATTGCGACCTATAGCATGACACCAAAAGAGCTTAAGGAGTTAAAGATTTTGT
261 TTGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGT
* * *
34486447 TTCAAGATTTTCTTAATAGAAGGTTCATTCGACCGAGTGTACCTCTGTAGGGTGCACCAGTTTTG
326 TTCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTTG
34486512 TTTGTGAAGAAGAAGGATGGTACGATGCAGATATGTTATTAGTTCCTTTGGTGATAGTGTGGAAG
391 TTTGTGAAGAAGAAGGATGGTACGATGCAGATATGTTATTAGTTCCTTTGGTGATAGTGTGGAAG
* *
34486577 TGAATAAAATTTATTCTAGATGCCCCATTATGGTTCAAGGGCACATTTTCTCTATTGATCGTATG
456 TGAATAAAATTTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGATCGTATG
*
34486642 GAATTTTTGTTCTACGATTTTATGTGATTCTTGGTATGGACTGGTTGAGTGAGCATAAGGCTAAG
521 GAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACTGGTTGAGTGAGCATAAGGCTAAG
34486707 GTAGATTTTGAGATGAAACGAATTACTTTGA
586 GTAGATTTTGAGATGAAACGAATTACTTTGA
*
34486738 GGAATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACTGGGATTAATGTCCAATGTGGTT
1 GGAATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTT
* *
34486803 TCAACTAAGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACCTAGCTTATATGATAAA
66 TCAACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAA
34486868 TTCAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTC
131 TTCAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTC
34486933 CTGAAAAGTTGTCTGGTTTACCACCAGACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTA
196 CTGAAAAGTTGTCTGGTTTACCACCAGACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTA
34486998 TTGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGT
261 TTGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGT
** * * *
34487063 TTCAAGTTTTTCTTAATAGAAGGTTCATTCCACCGAGTGTACCTCTGTAGGGTGCACCAGTTTTG
326 TTCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTTG
*
34487128 TTTGTGAAGAAGAAGGATGGTACGATGCAGATATGTTATTAGTTCCTTTGGTGATAGTGTGAAAG
391 TTTGTGAAGAAGAAGGATGGTACGATGCAGATATGTTATTAGTTCCTTTGGTGATAGTGTGGAAG
34487193 TGAATAAAATTTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGATCGTATG
456 TGAATAAAATTTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGATCGTATG
* *
34487258 GAATTTTTGTTCTACGATTTTATGTGATTCTTGGTATGGATTGGTTGAGTGAGCATAAGGCTAAG
521 GAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACTGGTTGAGTGAGCATAAGGCTAAG
34487323 GTAGATTTTGAGATGAAACGAATTACTTTGA
586 GTAGATTTTGAGATGAAACGAATTACTTTGA
*
34487354 GGAATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGCT
1 GGAATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTT
*
34487419 TCAACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTATGAACCTTACTTAGCTTATATGATAAA
66 TCAACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAA
34487484 TTCAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTTCTCCTAACGTGTTT
131 TTCAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGA-TTCTCCTAACGTGTTT
*
34487549 CCTGAAAAGTTGTCTGGTTTAGCACCAGAACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGG
195 CCTGAAAAGTTGTCTGGTTTACCACCAG-ACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGG
* * *
34487614 TATTGCACAGTGTGTATTGCGACCTATAGCATGACACCAAAAGAGCTTAAGGAGTTAAAGATTTT
259 TATTGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTA
* * *
34487679 GTTTCAAGATTTTCTTAATAGAAGGTTCATTCGACCGAGTGTACCTCTGTAGGGTGCACCAGTTT
324 GTTTCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTT
34487744 TGTTTGTGAAGAAGAAGGATGGTACGATGCAGATATGTTATTAGTTCCTTTGGTGATAGTGTGGA
389 TGTTTGTGAAGAAGAAGGATGGTACGATGCAGATATGTTATTAGTTCCTTTGGTGATAGTGTGGA
34487809 AGTGAATAAAATTTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGATCGTA
454 AGTGAATAAAATTTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGATCGTA
34487874 TGGAA-TTTTGTTCTACGGTTTTATGTGATTCTTGGTAT-GACTGGTTGAGTGAGCATAAGGCTA
519 TGGAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACTGGTTGAGTGAGCATAAGGCTA
34487937 AGGTAGATTTTGAGATGAAACGAATTACTTTGA
584 AGGTAGATTTTGAGATGAAACGAATTACTTTGA
*
34487970 GGAATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGGT
1 GGAATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTT
34488035 TCAACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAA
66 TCAACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAA
34488100 TTCAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGATTAAGGATTCTCCTAACGTGTTT
131 TTCAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGG-TTAAGGATTCTCCTAACGTGTTT
*
34488165 CCTGAAATGTTGTCTGGTTTACCACCAGAACATGAAGTTGAGTTTAGTATTAAGCTCCATCAT-G
195 CCTGAAAAGTTGTCTGGTTTACCACCAG-ACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGG
* *
34488229 TATTGCACAGTGTGTATTGTGACC-ATAGCATGACA-CAAAAGAGCTCAAGGAGTTAAAGATTTA
259 TATTGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTA
* *
34488292 GTTTCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTATGTAGGATGCACCAGTTT
324 GTTTCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTT
*
34488357 TGTTTGTGAAGAAGAAGGATGGTATGATGCAGATATGTTATTAGTTCCTTTGGTGATAGTGTGGA
389 TGTTTGTGAAGAAGAAGGATGGTACGATGCAGATATGTTATTAGTTCCTTTGGTGATAGTGTGGA
34488422 AGTGAATAAAATTTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGATCGTA
454 AGTGAATAAAATTTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGATCGTA
34488487 TGGAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACTGGTTGAGTGAGCATAAGGCTA
519 TGGAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACTGGTTGAGTGAGCATAAGGCTA
34488552 A-GTAGATTTTGAGATGAAACGAATTACTTTGA
584 AGGTAGATTTTGAGATGAAACGAATTACTTTGA
*
34488584 GGAATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGCT
1 GGAATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTT
34488649 TCAACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAA
66 TCAACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAA
*
34488714 TTCAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGTTTCTCCTAACGTGTTTC
131 TTCAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTC
* *
34488779 CTGAAAAGTTGTCTAGTTTAGCACCAGAACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGT
196 CTGAAAAGTTGTCTGGTTTACCACCAG-ACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGT
* * **
34488844 ATTGCACATTGTGCAATGCGACCTATAGCATGACATGAAAAGAGCTCAAGGAGTTAAAGATTTAG
260 ATTGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAG
*
34488909 TTTCAAGAGTTCCTTAATAGAAGGTGCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTT
325 TTTCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTT
* *
34488974 GTTTGTGAAGAAGAACGATGGTACGATGCAGATATGTTATTAGATCCTTTGGTGATAGTGTGGAA
390 GTTTGTGAAGAAGAAGGATGGTACGATGCAGATATGTTATTAGTTCCTTTGGTGATAGTGTGGAA
34489039 GTGAATAAAATTTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTT-TCTATTGATCGTAT
455 GTGAATAAAATTTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGATCGTAT
* *
34489103 GGAATTTTTGTTCTACAGTTTTATGTGATTCTTGGTATAGACTGGTTGAGTGAGCATAAGGCTAA
520 GGAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACTGGTTGAGTGAGCATAAGGCTAA
34489168 GGTAGATTTTGAGATGAAA-GAATTACTTTGA
585 GGTAGATTTTGAGATGAAACGAATTACTTTGA
* * *
34489199 GGAATAGTGATGGATTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTCATGTCCAATGTGGCT
1 GGAATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTT
* * *
34489264 TCAACTATGAAAGCTGAGAAGATGATAGAAAAAGCTTGTGAACGTTACTTAGCTTATATGATAAA
66 TCAACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAA
*
34489329 TTCAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGTTTCTCCTAACGTGTTTC
131 TTCAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTC
* * *
34489394 CTGAAAAGTTGTCTGGTTTAGCACAAGAACATGAAGTTGAGTTTAGTATTAAGCTGCATCATGGT
196 CTGAAAAGTTGTCTGGTTTACCACCAG-ACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGT
* * * *
34489459 ATTGCACATTGTGCATTGTGACCTATAGCATGACACGAAAAGAGCTCAAAGAGTTAAAGATTTAG
260 ATTGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAG
* *
34489524 TTTCAAGAGTTCCTCAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCATCAGTTTT
325 TTTCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTT
*
34489589 GTTTGTGAAGAAGAA-GA--GTACGATGCAGATATGTTATTAG-TCCTTTGGTGATAGTCTGGAA
390 GTTTGTGAAGAAGAAGGATGGTACGATGCAGATATGTTATTAGTTCCTTTGGTGATAGTGTGGAA
34489650 GTGAATAAAATTTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGATCGTAT
455 GTGAATAAAATTTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGATCGTAT
*
34489715 GAAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACTGGTTGAGTGAGCATAAGGCTAA
520 GGAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACTGGTTGAGTGAGCATAAGGCTAA
*
34489780 GGAAGATTTTGAGATGAAACGAATTACTTTGA
585 GGTAGATTTTGAGATGAAACGAATTACTTTGA
*
34489812 GGAATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGCT
1 GGAATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTT
*
34489877 TCAACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTGAGCTTATATGATAAA
66 TCAACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAA
*
34489942 TTCAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGTTTCTCCTAACGTGTTTC
131 TTCAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTC
*
34490007 CTGAAAAGTTGTCTGGTTTAGCACCAGAACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGT
196 CTGAAAAGTTGTCTGGTTTACCACCAG-ACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGT
*
34490072 ATTGCACATTGTGCATTGCGACCTATAGCATGACA-CAAAAGAGCTCAAGGAGTTAAAGATTTAG
260 ATTGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAG
34490136 TTTCAAGAGTTCCTTAATA-AAGGTTCATTCGACCGAGTGTATCT-TGTA-GGTGCACCAGTTTT
325 TTTCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTT
* * * * *
34490198 GTTTGTGAAGAATAACGATGGTGCGATGCAGAAATGTTATTAGTTCCTTTGGTGATAGTGTTGAA
390 GTTTGTGAAGAAGAAGGATGGTACGATGCAGATATGTTATTAGTTCCTTTGGTGATAGTGTGGAA
34490263 GTGAATAAAATTTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATT-ATCGTAT
455 GTGAATAAAATTTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGATCGTAT
*
34490327 GGAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGAACTGGTTGAGTGAGCATAAGGCTAA
520 GGAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACTGGTTGAGTGAGCATAAGGCTAA
* *
34490392 GGTAGATTTTGGGATGAAACAAATTACTTTGA
585 GGTAGATTTTGAGATGAAACGAATTACTTTGA
*
34490424 GGAATAGTGATGGGCTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTT
1 GGAATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTT
34490489 TCAACTATGAAAGCTGAGAAGATGATAGG-AAAGGTTGTGAACCTTACTTAGCTTATATGATAAA
66 TCAACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAA
34490553 TTCAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTC
131 TTCAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTC
*
34490618 CTGAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGAGTTTAGTATTAAGCTCCATCATAGT
196 CTGAAAAGTTGTCTGGTTTACCACCAG-ACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGT
* ** *
34490683 ATTGCACAGTGTGTATTGTAACCTATAGCATGACACCAAAAGAGCTCGAGGAGTTAAAGATTTAG
260 ATTGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAG
* * *
34490748 TTTCAAGAGTTCCTTAATAGAAGGTTCATTCGACCCAGTGTATCTATGTAGGATGCACCAGTTTT
325 TTTCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTT
*
34490813 GTTTGTGATGAAGAAGGATGGTACGATGCAGATATGTTATTAGTTCCTTTGGTGATAGTGTGGAA
390 GTTTGTGAAGAAGAAGGATGGTACGATGCAGATATGTTATTAGTTCCTTTGGTGATAGTGTGGAA
* * *
34490878 GTAAATAAAACTTATTGTAGATGTCCCATTATGGTTCAGGGGCACATTTTCTCTATTGATCGTAT
455 GTGAATAAAATTTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGATCGTAT
34490943 GGAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACTGGTTGAGTGAGCATAAGGCTAA
520 GGAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACTGGTTGAGTGAGCATAAGGCTAA
34491008 GGTAGATTTTGAGATGAAACGAATTACTTTGA
585 GGTAGATTTTGAGATGAAACGAATTACTTTGA
* * *
34491040 GGAATAGTGATGGGTTTGAAATTTTTGTTGTTGGTGAAAGGCCGGGATTAATGTCCAATGTGGCT
1 GGAATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTT
34491105 TCAACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAA
66 TCAACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAA
*
34491170 TTCAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTAAAGGATTCTCCTAACGTGTTTC
131 TTCAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTC
*
34491235 CTGAAAAGTTGTCTGGTTTAGCACCAGAACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGT
196 CTGAAAAGTTGTCTGGTTTACCACCAG-ACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGT
* *
34491300 ATTGCACATTGTGCATTGCGACCTATAGCATGACACGAAAAGAGCTCAAGGAGTTAAAGATTTAG
260 ATTGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAG
* * *
34491365 TTTCAAGAGTTCCTTAATAAAAGGTTCATTCGACCGAGTGTATCTTTGTAGTGTGCACCAGTTTT
325 TTTCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTT
* * *
34491430 GTTTGTGAAGAATAACGATGGTGCGATGCAGATATGTTATTAGTTCCTTTGGTGATAGTGTGGAA
390 GTTTGTGAAGAAGAAGGATGGTACGATGCAGATATGTTATTAGTTCCTTTGGTGATAGTGTGGAA
34491495 GTGAATAAAATTTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATT-ATCGTAT
455 GTGAATAAAATTTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGATCGTAT
*
34491559 GGAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGAACTGGTTGAGTGAGCATAAGGCTAA
520 GGAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACTGGTTGAGTGAGCATAAGGCTAA
* *
34491624 GGTAGATTTTGGGATGAAACAAATTACTTTGA
585 GGTAGATTTTGAGATGAAACGAATTACTTTGA
*
34491656 GGAATAGTGATGGGTTGGAAATTTTTGTTGTTTGTGAAAGACCGGGATTAATGTCCAATGTGGTT
1 GGAATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTT
34491721 TCAACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAA
66 TCAACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAA
*
34491786 TTCAGTTAGTAAGGATTTGAGAGTTCATGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTC
131 TTCAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTC
*
34491851 CTGAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGAGTTTAGTATTAAGCTCTATCATGGT
196 CTGAAAAGTTGTCTGGTTTACCACCAG-ACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGT
* *
34491916 ATTGCACAGTGTGCATTACGACCTATAGCATGACACCAAAAGACCTCAAGGAGTTAAAGATTTAG
260 ATTGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAG
**
34491981 TTTCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCATTAGTTTT
325 TTTCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTT
*
34492046 GTTTGTGAAGAAGAAGGATGGTACGATGCAGATATGTTATTAGTTCCTTTGGTGATATTGTGGAA
390 GTTTGTGAAGAAGAAGGATGGTACGATGCAGATATGTTATTAGTTCCTTTGGTGATAGTGTGGAA
* *
34492111 GTGAATAAAGTTTATGGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGATCGTAT
455 GTGAATAAAATTTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGATCGTAT
34492176 GGAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACTGGTTGAGTGAGCATAAGGCTAA
520 GGAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACTGGTTGAGTGAGCATAAGGCTAA
34492241 GGTAGATTTTGAGATGAAACGAATTACTTTGA
585 GGTAGATTTTGAGATGAAACGAATTACTTTGA
*
34492273 GGAATAGTGATGGGTTGGAAATTTTTGTTGTTTGTGAAAGACCGGGATTAATGTCCAATGTGGTT
1 GGAATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTT
34492338 TCAACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAA
66 TCAACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAA
*
34492403 TTCAGTTAGTAAGGATTTGAGAGTTCATGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTC
131 TTCAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTC
34492468 CTGAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGT
196 CTGAAAAGTTGTCTGGTTTACCACCAG-ACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGT
*
34492533 ATTGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAATGAGTTAAAGATTTAG
260 ATTGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAG
*
34492598 TTTCAAGAGGTCCTTA
325 TTTCAAGAGTTCCTTA
34492614 TGTAACACAC
Statistics
Matches: 13277, Mismatches: 793, Indels: 1156
0.87 0.05 0.08
Matches are distributed among these distances:
597 4 0.00
598 12 0.00
599 39 0.00
600 26 0.00
601 39 0.00
602 155 0.01
603 116 0.01
604 221 0.02
605 347 0.03
606 219 0.02
607 115 0.01
608 218 0.02
609 182 0.01
610 228 0.02
611 637 0.05
612 1098 0.08
613 1190 0.09
614 584 0.04
615 1391 0.10
616 2392 0.18
617 1534 0.12
618 428 0.03
619 146 0.01
620 93 0.01
621 62 0.00
622 63 0.00
623 43 0.00
624 114 0.01
625 154 0.01
626 101 0.01
627 67 0.01
628 29 0.00
629 6 0.00
630 13 0.00
631 14 0.00
632 15 0.00
633 3 0.00
634 9 0.00
635 22 0.00
636 6 0.00
637 7 0.00
638 13 0.00
639 23 0.00
640 18 0.00
641 13 0.00
642 10 0.00
643 4 0.00
644 3 0.00
646 3 0.00
647 1 0.00
648 7 0.00
649 5 0.00
650 5 0.00
651 15 0.00
652 8 0.00
653 1 0.00
654 16 0.00
655 13 0.00
656 20 0.00
657 10 0.00
658 10 0.00
659 6 0.00
660 9 0.00
661 7 0.00
662 15 0.00
663 15 0.00
664 6 0.00
665 20 0.00
666 3 0.00
667 7 0.00
668 9 0.00
669 14 0.00
670 10 0.00
671 4 0.00
672 4 0.00
673 9 0.00
674 13 0.00
675 6 0.00
676 1 0.00
677 6 0.00
678 3 0.00
679 1 0.00
680 6 0.00
681 7 0.00
682 3 0.00
683 4 0.00
684 11 0.00
685 26 0.00
686 23 0.00
687 7 0.00
688 4 0.00
689 11 0.00
690 10 0.00
691 5 0.00
692 11 0.00
693 16 0.00
694 15 0.00
695 15 0.00
696 6 0.00
697 19 0.00
698 27 0.00
699 14 0.00
700 15 0.00
701 9 0.00
702 7 0.00
703 12 0.00
704 12 0.00
705 19 0.00
706 24 0.00
707 23 0.00
708 62 0.00
709 20 0.00
710 23 0.00
711 57 0.00
712 78 0.01
713 47 0.00
714 83 0.01
715 4 0.00
716 7 0.00
717 4 0.00
718 8 0.00
719 10 0.00
720 1 0.00
721 4 0.00
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.34
Consensus pattern (616 bp):
GGAATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTT
TCAACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAA
TTCAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTC
CTGAAAAGTTGTCTGGTTTACCACCAGACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTA
TTGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGT
TTCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTTG
TTTGTGAAGAAGAAGGATGGTACGATGCAGATATGTTATTAGTTCCTTTGGTGATAGTGTGGAAG
TGAATAAAATTTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGATCGTATG
GAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACTGGTTGAGTGAGCATAAGGCTAAG
GTAGATTTTGAGATGAAACGAATTACTTTGA
Found at i:34493433 original size:37 final size:37
Alignment explanation
Indices: 34493372--34493450 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
34493362 TTATTACGAA
* * * *
34493372 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
*
34493409 GTCTTACCCAGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
34493446 GTCTT
1 GTCTT
34493451 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
Found at i:34493647 original size:47 final size:47
Alignment explanation
Indices: 34493569--34494027 Score: 783
Period size: 47 Copynumber: 9.7 Consensus size: 47
34493559 CCCTTCGGGA
* * * * * *
34493569 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
34493616 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34493663 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34493710 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34493757 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
34493806 CCTATCACATATATATACACTTTCACATTCATCACATCGGTCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34493855 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
34493902 CTTATCACTTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34493949 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34493996 CTTATCACATATATACACTTTCACATTCATCA
1 CTTATCACATATATACACTTTCACATTCATCA
34494028 AGTATGGGTT
Statistics
Matches: 394, Mismatches: 16, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
47 301 0.76
49 93 0.24
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:34493999 original size:239 final size:235
Alignment explanation
Indices: 34493571--34494027 Score: 797
Period size: 239 Copynumber: 1.9 Consensus size: 235
34493561 CTTCGGGACT
* * * *
34493571 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACACTT
1 TATCACATTTATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACACTT
34493636 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGG
66 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGG
34493701 CCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
131 CCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-
34493766 TATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
195 -ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* * * *
34493808 TATCACATATATATACACTTTCACATTCATCACATCGGTCATTAGGCCTTATCACATATATACAC
1 TATCACAT-T-TATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
*
34493873 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACTTATATACACTTTCACATTCATCACATC
64 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
34493938 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
129 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
34494003 CATATATACACTTTCACATTCATCA
194 CATATATACACTTTCACATTCATCA
34494028 AGTATGGGTT
Statistics
Matches: 209, Mismatches: 9, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
237 32 0.15
238 1 0.00
239 176 0.84
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (235 bp):
TATCACATTTATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACACTT
TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGG
CCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
TATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
Found at i:34497459 original size:617 final size:616
Alignment explanation
Indices: 34496239--34498793 Score: 4555
Period size: 617 Copynumber: 4.1 Consensus size: 616
34496229 GGGTGTCACA
34496239 CCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACAGTTTTGTTTGTGAAGAA
1 CCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACAGTTTTGTTTGTGAAGAA
* *
34496304 -AAAGAATGGTACGATGCAGATATGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATCAAAT
66 GAACG-ATGGTACGATGCAGATATGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAAT
*
34496368 TTATTGTAGATGTCCCATTATGGTTCAGGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGT
130 TTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGT
34496433 TCTACGATTTTATGTGATTCTTGGTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTG
195 TCTACGATTTTATGTGATTCTTGGTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTG
* * *
34496498 AGATGAAATGAATTACTTTGAGGAATAGTGATGGGTTGGAAATTTTTGCTGTTTGTGAAAGACCG
260 AGATGAAACGAATTACTTTGAGGAATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCG
34496563 GGATTAATGTCCAATGTGGTTTCAACTATGAAAGCTGA-ATAGATGATAGGAAAAGGTTGTGAAC
325 GGATTAATGTCCAATGTGGTTTCAACTATGAAAGCTGAGA-AGATGATAGGAAAAGGTTGTGAAC
34496627 CTTACTTAGCTTATATGATAAATTCAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTT
389 CTTACTTAGCTTATATGATAAATTCAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTT
* *
34496692 AAGGATTATCCTAACGTGTTTCCTGAAAAGTTGTCTAGTTTACCACCAGAACATGAAGTTGAGTT
454 AAGGATTCTCCTAACGTGTTTCCTGAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGAGTT
34496757 TAGTATTAAGCTCCATCATGGTATTGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGA
519 TAGTATTAAGCTCCATCATGGTATTGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGA
34496822 GCTCAAGGAGTTAAAGATTTAGTTTCAAGAGTT
584 GCTCAAGGAGTTAAAGATTTAGTTTCAAGAGTT
*
34496855 CCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCATTAGTTTTGTTTGTGAAGA
1 CCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCA-CAGTTTTGTTTGTGAAGA
*
34496920 AGAACGATGGTACGATACAGATATGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAAT
65 AGAACGATGGTACGATGCAGATATGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAAT
*
34496985 TTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTAT
130 TTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGT
*
34497050 TCTACGGTTTTATGTGATTCTTGGTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTG
195 TCTACGATTTTATGTGATTCTTGGTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTG
* *
34497115 GGATGAAACGAATTACTTTGAGGAATAGTGATGGGTTGGAAATTTTTGTTGTTTGTGAAAGACCG
260 AGATGAAACGAATTACTTTGAGGAATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCG
*
34497180 GGATTAATGTCCAATGTGGTTTCAACTATGAAAGCTGAGAATATGATAGGAAAAGGTTGTGAACC
325 GGATTAATGTCCAATGTGGTTTCAACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACC
* *
34497245 TTACTTAGCTTATATGATAAATTCAGTTAGTAAGGATTTGAGAGGTCATGATATTCTCACGGTTA
390 TTACTTAGCTTATATGATAAATTCAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTA
34497310 AGGATTCTCCTAACGTGTTTCCTGAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGAGTTT
455 AGGATTCTCCTAACGTGTTTCCTGAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGAGTTT
34497375 AGTATTAAGCTCCATCATGGTATTGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAG
520 AGTATTAAGCTCCATCATGGTATTGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAG
*
34497440 CTCAAGGAGTTAAAGATTTAGTTTCAAGAGGT
585 CTCAAGGAGTTAAAGATTTAGTTTCAAGAGTT
* *
34497472 CCTTAATAGTAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACAGTTTTATTTGTGAAGAA
1 CCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACAGTTTTGTTTGTGAAGAA
34497537 GAA-GAATGGTACGATGCAGATATGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAAT
66 GAACG-ATGGTACGATGCAGATATGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAAT
*
34497601 TTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGATTGTATGGAATTTTTGT
130 TTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGT
*
34497666 TCTACGATTTTATGTGATTCTTGGTATGGACTGGTTGAGTGAGCATAAGGCTATGGTAGATTTTG
195 TCTACGATTTTATGTGATTCTTGGTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTG
*
34497731 AGATGAAACGAATTACTTTGAGGAATAGTGATGGGTTCGAAATTTTTGTTGTTGGTGAAAGACCG
260 AGATGAAACGAATTACTTTGAGGAATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCG
* * * *
34497796 TGATTAATGTCCAATGTGGTTTCAACTATGAAAGCTAAGAAGATGATGGGATAAGGTTGTGAACC
325 GGATTAATGTCCAATGTGGTTTCAACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACC
*
34497861 TTACTTAGCTTATATGATAAATTCAGTTAGTAAGGATTTAAGAGTTCAGGATATTCTCACGGTTA
390 TTACTTAGCTTATATGATAAATTCAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTA
* *
34497926 AGGATTCTCCTAACGTGTTTCTTGAAAAGTTGTCTGGTTTACCCCCAG-ACATGAAGTTGAGTTT
455 AGGATTCTCCTAACGTGTTTCCTGAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGAGTTT
34497990 AGT-TTAAGCTCCATCATGGTATTGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAG
520 AGTATTAAGCTCCATCATGGTATTGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAG
* *
34498054 TTCAAGGAGTTAAAGATTTTGTTTCAAGAGTT
585 CTCAAGGAGTTAAAGATTTAGTTTCAAGAGTT
*
34498086 CCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGTACCAGTTTTGTTTGTGAAGA
1 CCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCA-CAGTTTTGTTTGTGAAGA
* ** *
34498151 AGAACAATGGTACTTTGCAGATATGTTATTAGTTCCTTTGGTTATAGTGTGGAAGTGAATAAAAT
65 AGAACGATGGTACGATGCAGATATGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAAT
*
34498216 TTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCGCTATTGATCGTATGGAATTTTTGT
130 TTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGT
* *
34498281 TCTACGGTTTTATGTGATTCTTGGTATGGACTGGTTGAGTGAGCATAAGGCTATGGTAGATTTTG
195 TCTACGATTTTATGTGATTCTTGGTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTG
34498346 AGATGAAACGAATTACTTTGAGGAATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCG
260 AGATGAAACGAATTACTTTGAGGAATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCG
*
34498411 GGATTAATGTCCAATGTGGTTTCAATTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACC
325 GGATTAATGTCCAATGTGGTTTCAACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACC
* *
34498476 TTACTTAGCTTATATGACAAATTCAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGATTA
390 TTACTTAGCTTATATGATAAATTCAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTA
* *
34498541 AGGATTCTCCTGACGTGTTTCCTGAAAAGTTGTCTGGTTTACCACCATAACATGAAGTTGAGTTT
455 AGGATTCTCCTAACGTGTTTCCTGAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGAGTTT
* *
34498606 AGTATTAAGCTCCATCATGGTATTGCACAGTGTGTATTGCGACCTATAGCATGGCACCAAAAGAG
520 AGTATTAAGCTCCATCATGGTATTGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAG
*
34498671 CTCAAGGTGTTAAAGATTTAGTTTCAAGAGTT
585 CTCAAGGAGTTAAAGATTTAGTTTCAAGAGTT
34498703 CCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTTGTTTGTGAAGA
1 CCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCA-CAGTTTTGTTTGTGAAGA
* *
34498768 AGAATGATGGT-CTGATGCAGTTATGT
65 AGAACGATGGTAC-GATGCAGATATGT
34498794 ATTGACTATA
Statistics
Matches: 1856, Mismatches: 74, Indels: 17
0.95 0.04 0.01
Matches are distributed among these distances:
614 134 0.07
615 454 0.24
616 500 0.27
617 764 0.41
618 4 0.00
ACGTcount: A:0.28, C:0.12, G:0.25, T:0.35
Consensus pattern (616 bp):
CCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACAGTTTTGTTTGTGAAGAA
GAACGATGGTACGATGCAGATATGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAATT
TATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTT
CTACGATTTTATGTGATTCTTGGTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGA
GATGAAACGAATTACTTTGAGGAATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGG
GATTAATGTCCAATGTGGTTTCAACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCT
TACTTAGCTTATATGATAAATTCAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAA
GGATTCTCCTAACGTGTTTCCTGAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGAGTTTA
GTATTAAGCTCCATCATGGTATTGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGC
TCAAGGAGTTAAAGATTTAGTTTCAAGAGTT
Found at i:34504571 original size:21 final size:21
Alignment explanation
Indices: 34504545--34504584 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
34504535 TTACACCACG
34504545 TTGTGGATAAACCACTCATCT
1 TTGTGGATAAACCACTCATCT
*
34504566 TTGTGGATGAACCACTCAT
1 TTGTGGATAAACCACTCAT
34504585 TATGGATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.33
Consensus pattern (21 bp):
TTGTGGATAAACCACTCATCT
Found at i:34505778 original size:17 final size:16
Alignment explanation
Indices: 34505735--34505772 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
34505725 AATATAGTTT
*
34505735 AAAGAAAAGAAAAAGAA
1 AAAGAAAA-TAAAAGAA
34505752 AAAGAAAATAAAA-AA
1 AAAGAAAATAAAAGAA
34505767 AAAGAA
1 AAAGAA
34505773 TAAATAGAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 8 0.40
16 4 0.20
17 8 0.40
ACGTcount: A:0.84, C:0.00, G:0.13, T:0.03
Consensus pattern (16 bp):
AAAGAAAATAAAAGAA
Found at i:34512360 original size:25 final size:25
Alignment explanation
Indices: 34512332--34512435 Score: 77
Period size: 25 Copynumber: 4.2 Consensus size: 25
34512322 CATGGAAATC
34512332 CTTTATGGTGAATTCTCTAGAAAGT
1 CTTTATGGTGAATTCTCTAGAAAGT
* ** * *
34512357 CTTTGTGGAAAATTCTTTGGAAAG-
1 CTTTATGGTGAATTCTCTAGAAAGT
* *
34512381 CTTTTGTGGTGAATTCTCTAGACA-T
1 C-TTTATGGTGAATTCTCTAGAAAGT
* * * *
34512406 CCTCTATAGCGAATTCTCTAGAAAGC
1 -CTTTATGGTGAATTCTCTAGAAAGT
34512432 CTTT
1 CTTT
34512436 GTGGCGTGTT
Statistics
Matches: 58, Mismatches: 17, Indels: 8
0.70 0.20 0.10
Matches are distributed among these distances:
24 1 0.02
25 56 0.97
26 1 0.02
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.38
Consensus pattern (25 bp):
CTTTATGGTGAATTCTCTAGAAAGT
Found at i:34516555 original size:27 final size:27
Alignment explanation
Indices: 34516520--34516652 Score: 151
Period size: 27 Copynumber: 4.9 Consensus size: 27
34516510 ACATTCAGAA
* *
34516520 TTTGTCACAAAGGC-ATCACTTTTAGAG
1 TTTGCCACAAAGGCTAT-TCTTTTAGAG
* *
34516547 ATCGCCACAAAGGCTATTCTTTTAGAG
1 TTTGCCACAAAGGCTATTCTTTTAGAG
* *
34516574 TTTACCACAAAGGCTATTCTTTCAGAG
1 TTTGCCACAAAGGCTATTCTTTTAGAG
*
34516601 TTTGCCACAAAGGTTATTCTTTTCAGAG
1 TTTGCCACAAAGGCTATTCTTTT-AGAG
* * *
34516629 TTTACCGCAAAGGTTATTCTTTTA
1 TTTGCCACAAAGGCTATTCTTTTA
34516653 TGTCATGTTT
Statistics
Matches: 91, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
27 64 0.70
28 27 0.30
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.36
Consensus pattern (27 bp):
TTTGCCACAAAGGCTATTCTTTTAGAG
Found at i:34516639 original size:28 final size:28
Alignment explanation
Indices: 34516551--34516651 Score: 152
Period size: 27 Copynumber: 3.7 Consensus size: 28
34516541 TTAGAGATCG
34516551 CCACAAAGGCTATTCTTTT-AGAGTTTA
1 CCACAAAGGCTATTCTTTTCAGAGTTTA
*
34516578 CCACAAAGGCTATTC-TTTCAGAGTTTG
1 CCACAAAGGCTATTCTTTTCAGAGTTTA
*
34516605 CCACAAAGGTTATTCTTTTCAGAGTTTA
1 CCACAAAGGCTATTCTTTTCAGAGTTTA
* *
34516633 CCGCAAAGGTTATTCTTTT
1 CCACAAAGGCTATTCTTTT
34516652 ATGTCATGTT
Statistics
Matches: 68, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
26 3 0.04
27 36 0.53
28 29 0.43
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.38
Consensus pattern (28 bp):
CCACAAAGGCTATTCTTTTCAGAGTTTA
Found at i:34529723 original size:19 final size:20
Alignment explanation
Indices: 34529701--34529742 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
34529691 TTTGAACTGT
*
34529701 TATAAC-AATTGTATGCCTA
1 TATAACTAATTGAATGCCTA
34529720 TATAACTAATTGAATGCCTA
1 TATAACTAATTGAATGCCTA
34529740 TAT
1 TAT
34529743 TGTTTAGACT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 6 0.29
20 15 0.71
ACGTcount: A:0.38, C:0.14, G:0.10, T:0.38
Consensus pattern (20 bp):
TATAACTAATTGAATGCCTA
Found at i:34547554 original size:22 final size:21
Alignment explanation
Indices: 34547525--34547567 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
34547515 CATTAAATAC
34547525 CCAAAACCCTAACTCTAAAAA
1 CCAAAACCCTAACTCTAAAAA
* *
34547546 CCAATAACCCTAATTTTAAAAA
1 CCAA-AACCCTAACTCTAAAAA
34547568 AACCTAGAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.51, C:0.28, G:0.00, T:0.21
Consensus pattern (21 bp):
CCAAAACCCTAACTCTAAAAA
Found at i:34548414 original size:17 final size:17
Alignment explanation
Indices: 34548392--34548439 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
34548382 TTTAAATGTT
34548392 TTTTTATATTTTTAAAA
1 TTTTTATATTTTTAAAA
34548409 TTTTTA-ATTTTTTAAAA
1 TTTTTATA-TTTTTAAAA
* * *
34548426 ATTATATTTTTTTA
1 TTTTTATATTTTTA
34548440 TATTTTTAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
16 1 0.04
17 25 0.96
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (17 bp):
TTTTTATATTTTTAAAA
Found at i:34548434 original size:23 final size:24
Alignment explanation
Indices: 34548408--34548469 Score: 65
Period size: 24 Copynumber: 2.6 Consensus size: 24
34548398 TATTTTTAAA
34548408 ATTTTTAATTTTTTAAA-AATTAT
1 ATTTTTAATTTTTTAAATAATTAT
* *
34548431 ATTTTTTTATATTTTTAAATAATTTT
1 A-TTTTTAAT-TTTTTAAATAATTAT
*
34548457 A-TTTTATTTTTTT
1 ATTTTTAATTTTTT
34548470 GAATTTTTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
23 6 0.19
24 12 0.38
25 8 0.25
26 6 0.19
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (24 bp):
ATTTTTAATTTTTTAAATAATTAT
Found at i:34548438 original size:26 final size:26
Alignment explanation
Indices: 34548409--34548461 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
34548399 ATTTTTAAAA
*
34548409 TTTTTAAT-TTTTTAAA-AATTATAT
1 TTTTTTATATTTTTAAATAATTATAT
*
34548433 TTTTTTATATTTTTAAATAATTTTAT
1 TTTTTTATATTTTTAAATAATTATAT
34548459 TTT
1 TTT
34548462 ATTTTTTTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 7 0.28
25 8 0.32
26 10 0.40
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (26 bp):
TTTTTTATATTTTTAAATAATTATAT
Found at i:34549317 original size:114 final size:113
Alignment explanation
Indices: 34548985--34549858 Score: 998
Period size: 114 Copynumber: 7.7 Consensus size: 113
34548975 CGATCTTCGT
* * * ** * *
34548985 AAAACACCGCTAAAGCACATAATTAGCGGCGCAATGCAAAAAGTGCCGCAAAATATCTTAACCAA
1 AAAACGCCGCTAAAGCACATCATTAGCGGCGCATTATAAAAAGCGCCGCAAAAAATCTTAACCAA
*
34549050 AACGCAGCGTTTGGTCTTGAGGTATATTAGAATTAGTGGCGCTTATGGA
66 AACGCATCGTTTGGTCTTGAGGTATATTAGAATTAGTGGCGCTTAT-GA
* * *
34549099 AAAACGCCGCTAAAGCACAGCATTAG-GGCGCATTATAAAAAGCGCCGC-AAAAATATTAACAAA
1 AAAACGCCGCTAAAGCACATCATTAGCGGCGCATTATAAAAAGCGCCGCAAAAAATCTTAACCAA
*
34549162 AACGCATCGTTTGGTCTTGAGGTATTTTAGAATTAGTGGCGCTTAT-A
66 AACGCATCGTTTGGTCTTGAGGTATATTAGAATTAGTGGCGCTTATGA
* * * * * *
34549209 ATGAAACGCCGCTAACGAACATCATTAGCGGCACAATATAAAAAGCGTCGCAAAATATCTTAACC
1 A--AAACGCCGCTAAAGCACATCATTAGCGGCGCATTATAAAAAGCGCCGCAAAAAATCTTAACC
*
34549274 AAAACGCAGCGTTTGG-CTTTGAGGTATATTAGAATTAGTGGCGCTTATGGA
64 AAAACGCATCGTTTGGTC-TTGAGGTATATTAGAATTAGTGGCGCTTAT-GA
* * ** *
34549325 AAAACGCCTCTAAAGCACACCATTAGCGGCATATTATACAAAGCGCCGCAAAAAATCTTAACCAA
1 AAAACGCCGCTAAAGCACATCATTAGCGGCGCATTATAAAAAGCGCCGCAAAAAATCTTAACCAA
* * * * *
34549390 AATGCATCGTTTTGG-GTTGATGCA-ATTTAGAATTAGTGGCACTTATGGA
66 AACGCATCG-TTTGGTCTTGAGGTATA-TTAGAATTAGTGGCGCTTAT-GA
* * ** *
34549439 AAAACGCCGCTAAAGCACACCATTAGCGTCGCATTATTCAGAGCGCCGCAAAAAATCTTAACCAA
1 AAAACGCCGCTAAAGCACATCATTAGCGGCGCATTATAAAAAGCGCCGCAAAAAATCTTAACCAA
* *
34549504 AACGCATCGTTTTGG-GTTGAGGTAT-TTGAGAATTAGTGGCGCTTATAA
66 AACGCATCG-TTTGGTCTTGAGGTATATT-AGAATTAGTGGCGCTTATGA
* *
34549552 TAAAACGCCGCTAAAGCACATCATTAGCGGCGCATTATAAAAAGCGCCGCAAAATATCTTTACCA
1 -AAAACGCCGCTAAAGCACATCATTAGCGGCGCATTATAAAAAGCGCCGCAAAAAATCTTAACCA
34549617 AAACGCAGT-GTTTGGTCTTGAGGTATATTAGAATTAGTGGCGCTTATGGA
65 AAACGCA-TCGTTTGGTCTTGAGGTATATTAGAATTAGTGGCGCTTAT-GA
* ** * * * ** *
34549667 CAAACGCCGCTAAAGCACAGAATTACCGGCGCATTATGAAAGGCGCCTTAAAAAATATTAACCAA
1 AAAACGCCGCTAAAGCACATCATTAGCGGCGCATTATAAAAAGCGCCGCAAAAAATCTTAACCAA
* * *
34549732 AACGCATCGTTTGGTCTTGAGGCATTTTAGAATTAGTGGCAC-TA-GA
66 AACGCATCGTTTGGTCTTGAGGTATATTAGAATTAGTGGCGCTTATGA
* * * *
34549778 GTAAAACGCC-ATGAAAGTACATCATTAGCGGCGCATTATACAAAGTGCCGCAAAAAAAATCTTA
1 --AAAACGCCGCT-AAAGCACATCATTAGCGGCGCATTATAAAAAGCGCCGC--AAAAAATCTTA
**
34549842 ACCAAAACATATCGTTT
61 ACCAAAACGCATCGTTT
34549859 TAAACCGAAA
Statistics
Matches: 651, Mismatches: 87, Indels: 43
0.83 0.11 0.06
Matches are distributed among these distances:
110 2 0.00
111 2 0.00
112 79 0.12
113 85 0.13
114 447 0.69
115 34 0.05
116 2 0.00
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (113 bp):
AAAACGCCGCTAAAGCACATCATTAGCGGCGCATTATAAAAAGCGCCGCAAAAAATCTTAACCAA
AACGCATCGTTTGGTCTTGAGGTATATTAGAATTAGTGGCGCTTATGA
Found at i:34549619 original size:342 final size:342
Alignment explanation
Indices: 34548985--34549859 Score: 1126
Period size: 342 Copynumber: 2.6 Consensus size: 342
34548975 CGATCTTCGT
* * * * * *
34548985 AAAACACCGCTAAAGCACATAATTAGCGGCGCA--ATGCAAAAAGTGCCGCAAAATATCTTAACC
1 AAAACGCCGCTAAAGCACACAATTACCGGCACATTATG--AAAAGCGCCGCAAAAAATCTTAACC
* ** *
34549048 AAAACGCAGCGTTTGGTCTTGAGGTATATTAGAATTAGTGGCGCTTATGGAAAAACGCCGCTAAA
64 AAAACGCATCGTTTGGTCTTGAGCAAT-TTAGAATTAGTGGCACTTATGGAAAAACGCCGCTAAA
* * * *
34549113 GCACAGCATTAG-GGCGCATTATAAAAAGCGCCGC-AAAAATATTAACAAAAACGCATCG-TTTG
128 GCACACCATTAGCGGCGCATTATACAAAGCGCCGCAAAAAATCTTAACCAAAACGCATCGTTTTG
* * *
34549175 GTCTTGAGGTATTTTAGAATTAGTGGCGCTTATAATGAAACGCCGCTAACGAACATCATTAGCGG
193 GTCTTGAGGTATTTGAGAATTAGTGGCGCTTATAATAAAACGCCGCTAAAGAACATCATTAGCGG
*
34549240 CACAATATAAAAAGCGTCGCAAAATATCTTAACCAAAACGCAGCGTTTGG-CTTTGAGGTATATT
258 CACAATATAAAAAGCGCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTC-TTGAGGTATATT
34549304 AGAATTAGTGGCGCTTATGGA
322 AGAATTAGTGGCGCTTATGGA
* * * *
34549325 AAAACGCCTCTAAAGCACACCATTAGCGGCATATTAT-ACAAAGCGCCGCAAAAAATCTTAACCA
1 AAAACGCCGCTAAAGCACACAATTACCGGCACATTATGA-AAAGCGCCGCAAAAAATCTTAACCA
* *
34549389 AAATGCATCGTTTTGG-GTTGATGCAATTTAGAATTAGTGGCACTTATGGAAAAACGCCGCTAAA
65 AAACGCATCG-TTTGGTCTTGA-GCAATTTAGAATTAGTGGCACTTATGGAAAAACGCCGCTAAA
* * *
34549453 GCACACCATTAGCGTCGCATTATTCAGAGCGCCGCAAAAAATCTTAACCAAAACGCATCGTTTTG
128 GCACACCATTAGCGGCGCATTATACAAAGCGCCGCAAAAAATCTTAACCAAAACGCATCGTTTTG
* *
34549518 G-GTTGAGGTATTTGAGAATTAGTGGCGCTTATAATAAAACGCCGCTAAAGCACATCATTAGCGG
193 GTCTTGAGGTATTTGAGAATTAGTGGCGCTTATAATAAAACGCCGCTAAAGAACATCATTAGCGG
* * * *
34549582 CGCATTATAAAAAGCGCCGCAAAATATCTTTACCAAAACGCAGTGTTTGGTCTTGAGGTATATTA
258 CACAATATAAAAAGCGCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTGAGGTATATTA
34549647 GAATTAGTGGCGCTTATGGA
323 GAATTAGTGGCGCTTATGGA
* * * * ** *
34549667 CAAACGCCGCTAAAGCACAGAATTACCGGCGCATTATGAAAGGCGCCTTAAAAAATATTAACCAA
1 AAAACGCCGCTAAAGCACACAATTACCGGCACATTATGAAAAGCGCCGCAAAAAATCTTAACCAA
* * *
34549732 AACGCATCGTTTGGTCTTGAGGCATTTTAGAATTAGTGGCAC-TA-GAGTAAAACGCC-ATGAAA
66 AACGCATCGTTTGGTCTTGA-GCAATTTAGAATTAGTGGCACTTATG-GAAAAACGCCGCT-AAA
* * * **
34549794 GTACATCATTAGCGGCGCATTATACAAAGTGCCGCAAAAAAAATCTTAACCAAAACATATCGTTT
128 GCACACCATTAGCGGCGCATTATACAAAGCGCCGC--AAAAAATCTTAACCAAAACGCATCGTTT
34549859 T
191 T
34549860 AAACCGAAAC
Statistics
Matches: 464, Mismatches: 56, Indels: 27
0.85 0.10 0.05
Matches are distributed among these distances:
339 1 0.00
340 111 0.24
341 74 0.16
342 244 0.53
343 34 0.07
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (342 bp):
AAAACGCCGCTAAAGCACACAATTACCGGCACATTATGAAAAGCGCCGCAAAAAATCTTAACCAA
AACGCATCGTTTGGTCTTGAGCAATTTAGAATTAGTGGCACTTATGGAAAAACGCCGCTAAAGCA
CACCATTAGCGGCGCATTATACAAAGCGCCGCAAAAAATCTTAACCAAAACGCATCGTTTTGGTC
TTGAGGTATTTGAGAATTAGTGGCGCTTATAATAAAACGCCGCTAAAGAACATCATTAGCGGCAC
AATATAAAAAGCGCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTGAGGTATATTAGAA
TTAGTGGCGCTTATGGA
Found at i:34549869 original size:20 final size:20
Alignment explanation
Indices: 34549841--34549878 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
34549831 AAAAAATCTT
*
34549841 AACCAAAACATATCGTTTTA
1 AACCAAAACATAACGTTTTA
*
34549861 AACCGAAACATAACGTTT
1 AACCAAAACATAACGTTT
34549879 CGTCTTGAGC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.45, C:0.21, G:0.08, T:0.26
Consensus pattern (20 bp):
AACCAAAACATAACGTTTTA
Found at i:34550617 original size:21 final size:21
Alignment explanation
Indices: 34550593--34550636 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
34550583 AAGGGTACTT
* *
34550593 GGTTTA-ATGGTTTGAGTTTAA
1 GGTTTAGA-GGTTGGAGATTAA
34550614 GGTTTAGAGGTTGGAGATTAA
1 GGTTTAGAGGTTGGAGATTAA
34550635 GG
1 GG
34550637 GATAGGGGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 19 0.95
22 1 0.05
ACGTcount: A:0.25, C:0.00, G:0.36, T:0.39
Consensus pattern (21 bp):
GGTTTAGAGGTTGGAGATTAA
Found at i:34551595 original size:191 final size:191
Alignment explanation
Indices: 34551271--34551650 Score: 652
Period size: 191 Copynumber: 2.0 Consensus size: 191
34551261 TGCAAATCCC
* * * *
34551271 TAGACCTTTCACCTCTTCAACGATGATTTCCCCTCTTCTCGGTCGAATATCGCTTCTCGTCTGGG
1 TAGACCTTTCACCCCTTCAACGACGATTTCCCCTCTTCTCGATCAAATATCGCTTCTCGTCTGGG
* *
34551336 CTGACTGGTAAAAAACTTTCCAAATCCCTAATTTCTCCGTTGACTCCGTATATGGCTGTTCATTT
66 CTGACTGGTAAAAAACTTTCCAAATCCCTAATTTCTCCGTTGAATACGTATATGGCTGTTCATTT
34551401 TTCTGTTCGATTTTTTCTTTCTCTAATGCCCGCTTTGTTTTTCCTTTCTCTTTAAATTCCA
131 TTCTGTTCGATTTTTTCTTTCTCTAATGCCCGCTTTGTTTTTCCTTTCTCTTTAAATTCCA
*
34551462 TAGACCTTTCACCCCTTCAACGACGATTTCCCCTCTTCTCGATCAAATATTGCTTCTCGTCTGGG
1 TAGACCTTTCACCCCTTCAACGACGATTTCCCCTCTTCTCGATCAAATATCGCTTCTCGTCTGGG
* *
34551527 CTGACTGGTAAAAATCTTTCCAAATCCCTAATTTCTCCGTTGAATACGTATATGGTTGTTCATTT
66 CTGACTGGTAAAAAACTTTCCAAATCCCTAATTTCTCCGTTGAATACGTATATGGCTGTTCATTT
* * *
34551592 TTCTGTTTGATTTTTTCTTTCTTTAATGCTCGCTTTGTTTTTCCTTTCTCTTTAAATTC
131 TTCTGTTCGATTTTTTCTTTCTCTAATGCCCGCTTTGTTTTTCCTTTCTCTTTAAATTC
34551651 TGTGTTGCTT
Statistics
Matches: 177, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
191 177 1.00
ACGTcount: A:0.18, C:0.26, G:0.13, T:0.44
Consensus pattern (191 bp):
TAGACCTTTCACCCCTTCAACGACGATTTCCCCTCTTCTCGATCAAATATCGCTTCTCGTCTGGG
CTGACTGGTAAAAAACTTTCCAAATCCCTAATTTCTCCGTTGAATACGTATATGGCTGTTCATTT
TTCTGTTCGATTTTTTCTTTCTCTAATGCCCGCTTTGTTTTTCCTTTCTCTTTAAATTCCA
Found at i:34552988 original size:25 final size:25
Alignment explanation
Indices: 34552960--34553007 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
34552950 AATATAGAAT
*
34552960 TTACATAAAATACAACTTACATATC
1 TTACATAAAACACAACTTACATATC
* *
34552985 TTACATAATACATAACTTACATA
1 TTACATAAAACACAACTTACATA
34553008 ATACAACACT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.48, C:0.19, G:0.00, T:0.33
Consensus pattern (25 bp):
TTACATAAAACACAACTTACATATC
Found at i:34553005 original size:9 final size:9
Alignment explanation
Indices: 34552930--34553328 Score: 283
Period size: 9 Copynumber: 45.7 Consensus size: 9
34552920 ATCTTGCATA
34552930 ATAACTTAC
1 ATAACTTAC
*
34552939 ATAACATAC
1 ATAACTTAC
*
34552948 ATAA--TAT
1 ATAACTTAC
* *
34552955 AGAATTTAC
1 ATAACTTAC
**
34552964 ATAAAATAC
1 ATAACTTAC
34552973 --AACTTAC
1 ATAACTTAC
*
34552980 ATATCTTAC
1 ATAACTTAC
34552989 ATAA--TAC
1 ATAACTTAC
34552996 ATAACTTAC
1 ATAACTTAC
34553005 ATAA--TAC
1 ATAACTTAC
34553012 A-ACACTTAC
1 ATA-ACTTAC
* *
34553021 ACAACTTAA
1 ATAACTTAC
*
34553030 ATAACTTAT
1 ATAACTTAC
*
34553039 ATAACTTGC
1 ATAACTTAC
*
34553048 ATAACTTAT
1 ATAACTTAC
*
34553057 ATAA-TAAC
1 ATAACTTAC
*
34553065 ATAA-TAAC
1 ATAACTTAC
34553073 -TAACATAGTAC
1 ATAAC-T--TAC
** * *
34553084 ATTGCCTAA
1 ATAACTTAC
*
34553093 ATAACTAAC
1 ATAACTTAC
34553102 ATAACTTAC
1 ATAACTTAC
* *
34553111 ATAAATTAA
1 ATAACTTAC
34553120 ATAACTTAC
1 ATAACTTAC
*
34553129 ATAAGTTAC
1 ATAACTTAC
*
34553138 ATAAGTTAC
1 ATAACTTAC
* *
34553147 ATAAATTAA
1 ATAACTTAC
34553156 ATAACTTAC
1 ATAACTTAC
34553165 ATAACTTAC
1 ATAACTTAC
*
34553174 ATAGCTTAC
1 ATAACTTAC
* *
34553183 ATAAATTAA
1 ATAACTTAC
34553192 ATAACTTAC
1 ATAACTTAC
34553201 ATAACTTAC
1 ATAACTTAC
*
34553210 ATAACTTAA
1 ATAACTTAC
*
34553219 ATAACTTCC
1 ATAACTTAC
34553228 ATAA--TAC
1 ATAACTTAC
34553235 ATAACCTT-C
1 ATAA-CTTAC
*
34553244 CTAACTTAC
1 ATAACTTAC
* *
34553253 ATTATTTAC
1 ATAACTTAC
34553262 ATAA--TAC
1 ATAACTTAC
** * *
34553269 ATTTCCTAA
1 ATAACTTAC
34553278 ATAACTTAC
1 ATAACTTAC
34553287 ATAACTTAC
1 ATAACTTAC
* *
34553296 ATAAATTAA
1 ATAACTTAC
34553305 ATAACTTAC
1 ATAACTTAC
34553314 ATAACTTAC
1 ATAACTTAC
34553323 ATAACT
1 ATAACT
34553329 CATTTATGGT
Statistics
Matches: 303, Mismatches: 66, Indels: 42
0.74 0.16 0.10
Matches are distributed among these distances:
6 1 0.00
7 36 0.12
8 13 0.04
9 247 0.82
10 2 0.01
11 2 0.01
12 2 0.01
ACGTcount: A:0.48, C:0.18, G:0.02, T:0.33
Consensus pattern (9 bp):
ATAACTTAC
Found at i:34553350 original size:26 final size:26
Alignment explanation
Indices: 34553314--34553369 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
34553304 AATAACTTAC
*
34553314 ATAACTTACATAACTCATTTATGGTT
1 ATAAATTACATAACTCATTTATGGTT
34553340 ATAAATTACATAACTCATTTATGGTT
1 ATAAATTACATAACTCATTTATGGTT
34553366 ATAA
1 ATAA
34553370 CTGGCGTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.39, C:0.12, G:0.07, T:0.41
Consensus pattern (26 bp):
ATAAATTACATAACTCATTTATGGTT
Found at i:34569264 original size:21 final size:21
Alignment explanation
Indices: 34569238--34569288 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
34569228 CTACAACTTA
* *
34569238 AAGCAGAGGCGGTAGCGAGTG
1 AAGCAGAGGCGGCAGCGAGAG
*
34569259 AAGCAGAGGCTGCAGCGAGAG
1 AAGCAGAGGCGGCAGCGAGAG
34569280 AAGCAGAGG
1 AAGCAGAGG
34569289 TTCAAAAGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.33, C:0.16, G:0.45, T:0.06
Consensus pattern (21 bp):
AAGCAGAGGCGGCAGCGAGAG
Found at i:34569780 original size:41 final size:42
Alignment explanation
Indices: 34569670--34569829 Score: 209
Period size: 42 Copynumber: 3.9 Consensus size: 42
34569660 ATTTTTGTAT
* * *
34569670 AAAAGCGCCGCTAAGGATCATGTTCTTTAGCGGCGCTTA-ATA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGA-A
* *
34569712 AAAATCGCCACTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
*
34569754 AAAAACGCCGCTAAAGAACATG-TCTTTAGAGGCGCTTAG-A
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
* **
34569794 AAAAACGCCGCTAAAGATCATGTTCTTCCGCGGCGC
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGC
34569830 CAAAAGAACA
Statistics
Matches: 105, Mismatches: 11, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
40 22 0.21
41 26 0.25
42 56 0.53
43 1 0.01
ACGTcount: A:0.33, C:0.23, G:0.22, T:0.23
Consensus pattern (42 bp):
AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
Found at i:34572562 original size:20 final size:20
Alignment explanation
Indices: 34572522--34572592 Score: 76
Period size: 20 Copynumber: 3.6 Consensus size: 20
34572512 TAATTCAAAA
*
34572522 TATTATAAAAA-ATTATAAAT
1 TATTATAAAAATATGAT-AAT
34572542 TATTATAAAAATATGATAAT
1 TATTATAAAAATATGATAAT
* *
34572562 TATAATAATAAT-TGATAAT
1 TATTATAAAAATATGATAAT
*
34572581 TAGTA-AAAAATA
1 TATTATAAAAATA
34572593 CTAACAAACT
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
18 5 0.12
19 10 0.23
20 24 0.56
21 4 0.09
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (20 bp):
TATTATAAAAATATGATAAT
Found at i:34572563 original size:17 final size:19
Alignment explanation
Indices: 34572543--34572589 Score: 62
Period size: 17 Copynumber: 2.5 Consensus size: 19
34572533 ATTATAAATT
34572543 ATTATAAAAAT-A-TGATA
1 ATTATAAAAATAATTGATA
*
34572560 ATTATAATAATAATTGATA
1 ATTATAAAAATAATTGATA
34572579 ATTAGTAAAAA
1 ATTA-TAAAAA
34572590 ATACTAACAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 10 0.40
18 1 0.04
19 9 0.36
20 5 0.20
ACGTcount: A:0.57, C:0.00, G:0.06, T:0.36
Consensus pattern (19 bp):
ATTATAAAAATAATTGATA
Found at i:34583637 original size:22 final size:25
Alignment explanation
Indices: 34583606--34583657 Score: 83
Period size: 22 Copynumber: 2.2 Consensus size: 25
34583596 TCTTTTAAAA
34583606 AATTATTAAAAAATATAT-TTTA-T
1 AATTATTAAAAAATATATATTTACT
34583629 AATT-TTAAAAAATATATATTTACT
1 AATTATTAAAAAATATATATTTACT
34583653 AATTA
1 AATTA
34583658 AATGAGGATT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
22 13 0.50
23 8 0.31
24 5 0.19
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (25 bp):
AATTATTAAAAAATATATATTTACT
Found at i:34591686 original size:30 final size:30
Alignment explanation
Indices: 34591650--34591711 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
34591640 AAAAAACAAA
34591650 ACCAATATATAAAAATCTACTATTAATCCT
1 ACCAATATATAAAAATCTACTATTAATCCT
34591680 ACCAATATATAAAAATCTACTATTAATCCT
1 ACCAATATATAAAAATCTACTATTAATCCT
34591710 AC
1 AC
34591712 TCCTAAAGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.47, C:0.21, G:0.00, T:0.32
Consensus pattern (30 bp):
ACCAATATATAAAAATCTACTATTAATCCT
Done.