Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67659327
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 461372 characters in sequence are not A, C, G, or T
File 109 of 216
Found at i:34610056 original size:30 final size:30
Alignment explanation
Indices: 34610022--34610084 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
34610012 TAGTATTAAG
34610022 ATAATTTCAAGCCATATAAGTAATATATGA
1 ATAATTTCAAGCCATATAAGTAATATATGA
* *
34610052 ATAATTTGAAGTCATATAAGTAATATATGA
1 ATAATTTCAAGCCATATAAGTAATATATGA
34610082 ATA
1 ATA
34610085 TACTTGAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.48, C:0.06, G:0.11, T:0.35
Consensus pattern (30 bp):
ATAATTTCAAGCCATATAAGTAATATATGA
Found at i:34610320 original size:10 final size:10
Alignment explanation
Indices: 34610307--34610344 Score: 51
Period size: 10 Copynumber: 3.9 Consensus size: 10
34610297 ATTAATAATA
34610307 AAAATTATTG
1 AAAATTATTG
34610317 AAAATTATTG
1 AAAATTATTG
*
34610327 AAAAATATT-
1 AAAATTATTG
*
34610336 AATATTATT
1 AAAATTATT
34610345 TTATTTAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
9 7 0.28
10 18 0.72
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (10 bp):
AAAATTATTG
Found at i:34610344 original size:19 final size:21
Alignment explanation
Indices: 34610306--34610344 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
34610296 TATTAATAAT
34610306 AAAAATTATTGAAAATTATTG
1 AAAAATTATTGAAAATTATTG
*
34610327 AAAAA-TATT-AATATTATT
1 AAAAATTATTGAAAATTATT
34610345 TTATTTAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
20 4 0.24
21 5 0.29
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (21 bp):
AAAAATTATTGAAAATTATTG
Found at i:34610931 original size:14 final size:14
Alignment explanation
Indices: 34610884--34610931 Score: 78
Period size: 14 Copynumber: 3.4 Consensus size: 14
34610874 AGGAATCTTT
34610884 ATTATATTAACTTA
1 ATTATATTAACTTA
*
34610898 ATTAAATTAATCTTA
1 ATTATATTAA-CTTA
34610913 ATTATATTAACTTA
1 ATTATATTAACTTA
34610927 ATTAT
1 ATTAT
34610932 TCATTAACAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
14 18 0.58
15 13 0.42
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (14 bp):
ATTATATTAACTTA
Found at i:34612877 original size:20 final size:21
Alignment explanation
Indices: 34612853--34612923 Score: 76
Period size: 20 Copynumber: 3.4 Consensus size: 21
34612843 ACATTAAATT
*
34612853 TAATATTAAATTTATTAAA-T
1 TAATATTAAATTTATTAAAGA
*
34612873 TAATA-GAATATTTATCTACAAGA
1 TAATATTAA-ATTTAT-TA-AAGA
34612896 TAATATTAAATTTATTAAA-A
1 TAATATTAAATTTATTAAAGA
34612916 TAATATTA
1 TAATATTA
34612924 TTTTTGGAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
19 2 0.05
20 20 0.47
21 4 0.09
22 4 0.09
23 11 0.26
24 2 0.05
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.44
Consensus pattern (21 bp):
TAATATTAAATTTATTAAAGA
Found at i:34613367 original size:9 final size:9
Alignment explanation
Indices: 34613353--34613377 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
34613343 TCATATTTAT
34613353 TTTAATTAA
1 TTTAATTAA
34613362 TTTAATTAA
1 TTTAATTAA
34613371 TTTAATT
1 TTTAATT
34613378 TTTCTTGATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (9 bp):
TTTAATTAA
Found at i:34619271 original size:22 final size:21
Alignment explanation
Indices: 34619217--34619281 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 21
34619207 TGCGAGTAGT
34619217 CAGAATGGCTAAGAGCCATAAA
1 CAGAATGGCTAA-AGCCATAAA
* *
34619239 CATG-ATAGCTATAAGCTATAAA
1 CA-GAATGGCTA-AAGCCATAAA
34619261 CAGAATGGCTACAAGCCATAA
1 CAGAATGGCTA-AAGCCATAA
34619282 GTATAGTAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
21 1 0.03
22 32 0.91
23 2 0.06
ACGTcount: A:0.45, C:0.18, G:0.18, T:0.18
Consensus pattern (21 bp):
CAGAATGGCTAAAGCCATAAA
Found at i:34619341 original size:32 final size:32
Alignment explanation
Indices: 34619303--34619505 Score: 298
Period size: 32 Copynumber: 6.3 Consensus size: 32
34619293 TAATTGGCGC
* * * * *
34619303 AGCCATCAGTAGCAGTGATATGATCGGCATAC
1 AGCCATCAGTAACGGTAATATGATCGGCACAA
* * *
34619335 ATCCATCAGTAACGGTAATACGATCGGTACAA
1 AGCCATCAGTAACGGTAATATGATCGGCACAA
*
34619367 AGCCATCAGTAACGGTAATATGATCGACACAA
1 AGCCATCAGTAACGGTAATATGATCGGCACAA
*
34619399 AGCCATCAATAACGGTAATATGATCGGCACAA
1 AGCCATCAGTAACGGTAATATGATCGGCACAA
*
34619431 ATCCATCAGTAACGGTAATATGATCGGCACAA
1 AGCCATCAGTAACGGTAATATGATCGGCACAA
*
34619463 AGCCATCAGTAACGGTAATATGATCGACACAA
1 AGCCATCAGTAACGGTAATATGATCGGCACAA
34619495 AGCCATCAGTA
1 AGCCATCAGTA
34619506 GCATCGCAGC
Statistics
Matches: 153, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 153 1.00
ACGTcount: A:0.38, C:0.22, G:0.20, T:0.20
Consensus pattern (32 bp):
AGCCATCAGTAACGGTAATATGATCGGCACAA
Found at i:34619467 original size:96 final size:96
Alignment explanation
Indices: 34619320--34619502 Score: 330
Period size: 96 Copynumber: 1.9 Consensus size: 96
34619310 AGTAGCAGTG
* * *
34619320 ATATGATCGGCATACATCCATCAGTAACGGTAATACGATCGGTACAAAGCCATCAGTAACGGTAA
1 ATATGATCGGCACAAATCCATCAGTAACGGTAATACGATCGGCACAAAGCCATCAGTAACGGTAA
34619385 TATGATCGACACAAAGCCATCAATAACGGTA
66 TATGATCGACACAAAGCCATCAATAACGGTA
*
34619416 ATATGATCGGCACAAATCCATCAGTAACGGTAATATGATCGGCACAAAGCCATCAGTAACGGTAA
1 ATATGATCGGCACAAATCCATCAGTAACGGTAATACGATCGGCACAAAGCCATCAGTAACGGTAA
34619481 TATGATCGACACAAAGCCATCA
66 TATGATCGACACAAAGCCATCA
34619503 GTAGCATCGC
Statistics
Matches: 83, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
96 83 1.00
ACGTcount: A:0.39, C:0.22, G:0.19, T:0.20
Consensus pattern (96 bp):
ATATGATCGGCACAAATCCATCAGTAACGGTAATACGATCGGCACAAAGCCATCAGTAACGGTAA
TATGATCGACACAAAGCCATCAATAACGGTA
Found at i:34619560 original size:26 final size:26
Alignment explanation
Indices: 34619512--34619561 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
34619502 AGTAGCATCG
*
34619512 CAGCAAAGCTGCCAGCAGGAGTATCA
1 CAGCAAAGCTGCCAGCAAGAGTATCA
* *
34619538 CAGCAAAGCTGCCAGTAATAGTAT
1 CAGCAAAGCTGCCAGCAAGAGTAT
34619562 ATGTGGCCAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.36, C:0.24, G:0.24, T:0.16
Consensus pattern (26 bp):
CAGCAAAGCTGCCAGCAAGAGTATCA
Found at i:34619579 original size:27 final size:27
Alignment explanation
Indices: 34619549--34619608 Score: 70
Period size: 27 Copynumber: 2.2 Consensus size: 27
34619539 AGCAAAGCTG
*
34619549 CCAGTAATAGT-ATATGTGGCCA-AGCCA
1 CCAGTAACAGTGAT-TGTGG-CAGAGCCA
*
34619576 CCAGTAACAGTGATTGTGGTAGAGCCA
1 CCAGTAACAGTGATTGTGGCAGAGCCA
34619603 CCAGTA
1 CCAGTA
34619609 CAATACTTCC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
26 1 0.03
27 26 0.90
28 2 0.07
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.22
Consensus pattern (27 bp):
CCAGTAACAGTGATTGTGGCAGAGCCA
Found at i:34619708 original size:24 final size:24
Alignment explanation
Indices: 34619681--34619758 Score: 70
Period size: 24 Copynumber: 3.3 Consensus size: 24
34619671 GCTCAGAATT
*
34619681 AATCATTCAAATCACAGACAAATA
1 AATCATTCAAATCACAGACAAATC
* *
34619705 AATCATACCAAA-CATAGACAAATC
1 AATCAT-TCAAATCACAGACAAATC
* * * *
34619729 AGTCATTTAACT-ACAGAAAAATC
1 AATCATTCAAATCACAGACAAATC
34619752 AATCATT
1 AATCATT
34619759 TAACCTCAAG
Statistics
Matches: 42, Mismatches: 10, Indels: 5
0.74 0.18 0.09
Matches are distributed among these distances:
23 17 0.40
24 21 0.50
25 4 0.10
ACGTcount: A:0.51, C:0.21, G:0.05, T:0.23
Consensus pattern (24 bp):
AATCATTCAAATCACAGACAAATC
Found at i:34619833 original size:27 final size:27
Alignment explanation
Indices: 34619780--34620165 Score: 479
Period size: 27 Copynumber: 14.3 Consensus size: 27
34619770 GTCAAAATAA
34619780 TCATTTTACCCTACA-GGGTATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
*
34619806 TCATTTTACCCTATAGGGGTATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
* * *
34619833 TCATTCTACCCTATAGGGTTATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
*
34619860 TCATTTTACCCTATAGGGGTATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
* *
34619887 TCATTTTACCTTACAGGGGTATTACAG
1 TCATTTTACCCTACAGGGGTATTACGG
*
34619914 TCATTTTACCCTACAGGGGTATTATGG
1 TCATTTTACCCTACAGGGGTATTACGG
* * * **
34619941 TCATTTTACCTTACAGAGCTATTATAG
1 TCATTTTACCCTACAGGGGTATTACGG
*
34619968 TCATTTTACTCTACAGGGGTATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
* *
34619995 TCATTTTAACCTACAGGGGTATTACAG
1 TCATTTTACCCTACAGGGGTATTACGG
* * * *
34620022 TTATTTTACCCTACAAGGGCATTATGG
1 TCATTTTACCCTACAGGGGTATTACGG
* ** *
34620049 TCATTTTACCCTAGACAGGTATTACGA
1 TCATTTTACCCTACAGGGGTATTACGG
*
34620076 TCATTTTACCCTATAGGGGTATTAAC-G
1 TCATTTTACCCTACAGGGGTATT-ACGG
* *
34620103 TCATTTTACCCTACAAGGGCATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
* * *
34620130 TCATTTAACCCTACAGGAGTATTACGA
1 TCATTTTACCCTACAGGGGTATTACGG
34620157 TCATTTTAC
1 TCATTTTAC
34620166 AACCTTTTCG
Statistics
Matches: 307, Mismatches: 50, Indels: 5
0.85 0.14 0.01
Matches are distributed among these distances:
26 16 0.05
27 289 0.94
28 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (27 bp):
TCATTTTACCCTACAGGGGTATTACGG
Found at i:34625000 original size:47 final size:47
Alignment explanation
Indices: 34624934--34625511 Score: 906
Period size: 47 Copynumber: 12.1 Consensus size: 47
34624924 GAAATGATAG
*
34624934 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
34624981 TAGGGCCTAATGGCCGATGTGATGAATGGGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
34625028 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGAGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
34625075 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
34625124 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTGTATATATGTGA
*
34625173 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGAGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
34625220 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
34625269 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
34625318 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
34625365 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
34625412 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* * * * * * *
34625461 -CAGGGCTGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCT-AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
34625508 TAAG
1 TAAG
34625512 TCCCGAAGGG
Statistics
Matches: 496, Mismatches: 25, Indels: 19
0.92 0.05 0.04
Matches are distributed among these distances:
47 274 0.55
48 7 0.01
49 212 0.43
51 3 0.01
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:34625145 original size:96 final size:94
Alignment explanation
Indices: 34624934--34625511 Score: 906
Period size: 96 Copynumber: 6.0 Consensus size: 94
34624924 GAAATGATAG
* *
34624934 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAGGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
34624999 GTGATGAATGGGAAAGTGTATATATGTGA
66 GTGATGAATGTGAAAGTGTATATATGTGA
*
34625028 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGAGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
34625093 GTGATGAATGTGAAAGTGTATATATATGTGA
66 GTGATGAATGTGAAAGTG--TATATATGTGA
*
34625124 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTGTATATATGTGATAAGGCCTAATGGCCG
*
34625189 ATGTGATGAATGTGAAAGTGTATATATGAGA
64 ATGTGATGAATGTGAAAGTGTATATATGTGA
*
34625220 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
34625285 ATGTGATGAATGTGAAAGTGTATATATATGTGA
64 ATGTGATGAATGTGAAAGTG--TATATATGTGA
*
34625318 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
34625383 GTGATGAATGTGAAAGTGTATATATGTGA
66 GTGATGAATGTGAAAGTGTATATATGTGA
* * * *
34625412 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGA-CAGGGCTGAGTGGCC
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCT-AATGGCC
* * * *
34625476 AACGTGATGGATGTGAAAGTGTATAAATGTGA
63 GATGTGATGAATGTGAAAGTGTATATATGTGA
34625508 TAAG
1 TAAG
34625512 TCCCGAAGGG
Statistics
Matches: 452, Mismatches: 21, Indels: 20
0.92 0.04 0.04
Matches are distributed among these distances:
94 128 0.28
95 5 0.01
96 224 0.50
98 95 0.21
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (94 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATGTGA
Found at i:34625204 original size:145 final size:143
Alignment explanation
Indices: 34624934--34625511 Score: 955
Period size: 145 Copynumber: 4.0 Consensus size: 143
34624924 GAAATGATAG
*
34624934 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAGGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGAT
*
34624999 GTGATGAATGGGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
66 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
34625062 TGTATATATGAGA
131 TGTATATATGAGA
34625075 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAGGGCCTAATGGCCG
*
34625140 ATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
64 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
34625205 AGTGTATATATGAGA
129 AGTGTATATATGAGA
34625220 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAGGGCCTAATGGCCG
34625285 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
64 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
34625350 AGTGTATATACGTGA
129 AGTGTATATATGAGA
*
34625365 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGAT
* * * * * * *
34625430 GTGATGAATGTGGAAGTGTATATATATGTGA-CAGGGCTGAGTGGCCAACGTGATGGATGTGAAA
66 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT-AATGGCCGATGTGATGAATGTGAAA
* *
34625494 GTGTATAAATGTGA
130 GTGTATATATGAGA
34625508 TAAG
1 TAAG
34625512 TCCCGAAGGG
Statistics
Matches: 417, Mismatches: 15, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
141 36 0.09
142 5 0.01
143 140 0.34
145 236 0.57
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (143 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGAGA
Found at i:34625686 original size:37 final size:37
Alignment explanation
Indices: 34625630--34625708 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
34625620 CCGAGCTCTA
* * *
34625630 AAGACCCGATGACTGCGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTGCGTGTGGAGATTATGTCCGGGT
*
34625667 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTGCGTGTGGAGATTATGTCCGGGT
34625704 AAGAC
1 AAGAC
34625709 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTGCGTGTGGAGATTATGTCCGGGT
Found at i:34627676 original size:43 final size:44
Alignment explanation
Indices: 34627575--34627677 Score: 199
Period size: 44 Copynumber: 2.4 Consensus size: 44
34627565 TGGTTTTCAA
34627575 CACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTTGG
1 CACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTTGG
34627619 CACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGA-TTGG
1 CACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTTGG
34627662 CACTAAGTGTGCGGGC
1 CACTAAGTGTGCGGGC
34627678 TTGAAATGCA
Statistics
Matches: 59, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
43 20 0.34
44 39 0.66
ACGTcount: A:0.22, C:0.16, G:0.35, T:0.27
Consensus pattern (44 bp):
CACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTTGG
Found at i:34627694 original size:29 final size:29
Alignment explanation
Indices: 34627659--34627732 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
34627649 GTTGTGAGAT
* *
34627659 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
34627688 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
34627717 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
34627733 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:34628093 original size:40 final size:40
Alignment explanation
Indices: 34628045--34628187 Score: 171
Period size: 40 Copynumber: 3.6 Consensus size: 40
34628035 TCGAATGATG
* *
34628045 TCCGGACTAAGTTCTGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
34628085 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
*** * * *
34628125 TCCGTG-CTAAACCCCGAAGAGCATTTGTGCTGGTGTTATA
1 TCCG-GACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
* * *
34628165 TCCGGGCTAGGTCCCGAAGAGCA
1 TCCGGACTAAGTTCCGAAGAGCA
34628188 ATCATGCTGG
Statistics
Matches: 90, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
39 1 0.01
40 88 0.98
41 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
Found at i:34632230 original size:49 final size:47
Alignment explanation
Indices: 34631969--34632499 Score: 805
Period size: 47 Copynumber: 11.1 Consensus size: 47
34631959 GAAATGATAG
* *
34631969 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
34632016 TAGGGCCTAATGGCTGATGTGATGAATGGGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
34632063 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGAGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
34632110 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
34632157 T-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTGTATATATGTGA
34632205 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
34632254 TAAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAA-GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
34632304 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
34632353 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
34632400 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* * * * * * *
34632449 -CAGGGCTGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCT-AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
34632496 TAAG
1 TAAG
34632500 TCCCGAAGGG
Statistics
Matches: 454, Mismatches: 20, Indels: 19
0.92 0.04 0.04
Matches are distributed among these distances:
46 31 0.07
47 193 0.43
48 22 0.05
49 160 0.35
50 48 0.11
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:34632423 original size:145 final size:143
Alignment explanation
Indices: 34631969--34632499 Score: 840
Period size: 145 Copynumber: 3.7 Consensus size: 143
34631959 GAAATGATAG
* * *
34631969 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATACGTGATAGGGCCTAATGGCTGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGAT
*
34632034 GTGATGAATGGGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
66 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
34632097 TGTATATATGAGA
131 TGTATATATGTGA
34632110 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA-GGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGAT
*
34632174 GTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
66 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
34632239 TGTATATATATGTGA
131 TG--TATATATGTGA
34632254 TAAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCC
1 TAA-GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAGGGCCTAATGGCC
34632319 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
63 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
34632384 AAGTGTATATATGTGA
128 AAGTGTATATATGTGA
* * *
34632400 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGACAGGG-CTGAGTGGCC
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAGGGCCT-AATGGCC
* * *
34632464 AACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
63 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
34632500 TCCCGAAGGG
Statistics
Matches: 369, Mismatches: 12, Indels: 16
0.93 0.03 0.04
Matches are distributed among these distances:
140 31 0.08
141 47 0.13
142 47 0.13
143 10 0.03
144 16 0.04
145 110 0.30
146 14 0.04
147 13 0.04
148 81 0.22
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.29
Consensus pattern (143 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGA
Found at i:34632674 original size:37 final size:37
Alignment explanation
Indices: 34632618--34632696 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
34632608 CCGAGCTCTA
* * *
34632618 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
34632655 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
34632692 AAGAC
1 AAGAC
34632697 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:34635374 original size:13 final size:14
Alignment explanation
Indices: 34635351--34635379 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
34635341 AAAAAGTGGT
34635351 CCAGTTGAACTGAA
1 CCAGTTGAACTGAA
34635365 CCAG-TGAACTGAA
1 CCAGTTGAACTGAA
34635378 CC
1 CC
34635380 GACCAAGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.34, C:0.28, G:0.21, T:0.17
Consensus pattern (14 bp):
CCAGTTGAACTGAA
Found at i:34640180 original size:25 final size:25
Alignment explanation
Indices: 34640152--34640200 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
34640142 ACGAATTTTC
34640152 TCAAAA-TTTATCGGGGGTAAAATTA
1 TCAAAATTTTAT-GGGGGTAAAATTA
*
34640177 TCAAAATTTTATTGGGGTAAAATT
1 TCAAAATTTTATGGGGGTAAAATT
34640201 GGGATGAGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 17 0.77
26 5 0.23
ACGTcount: A:0.39, C:0.06, G:0.18, T:0.37
Consensus pattern (25 bp):
TCAAAATTTTATGGGGGTAAAATTA
Found at i:34660914 original size:76 final size:76
Alignment explanation
Indices: 34660779--34660928 Score: 192
Period size: 76 Copynumber: 2.0 Consensus size: 76
34660769 TGGCATTCTA
** * * * * *
34660779 GTACATCATCAGATAAATCGAAAGAAATATATTGGCACACATTGTGCATCGTTAGACAAGCCGAA
1 GTACATCATCAGATAAATCGAAAGAAATATACCGGCACACACTGTGCATCATCAAACAAGCCAAA
*
34660844 GCAATTATACT
66 ACAATTATACT
* * * *
34660855 GTACATCATCGGATAAATCGAAATAAATATACCGGCACATACTGTGTATCATCAAACAAGCCAAA
1 GTACATCATCAGATAAATCGAAAGAAATATACCGGCACACACTGTGCATCATCAAACAAGCCAAA
34660920 ACAATTATA
66 ACAATTATA
34660929 TTAACACGCG
Statistics
Matches: 62, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
76 62 1.00
ACGTcount: A:0.42, C:0.19, G:0.15, T:0.24
Consensus pattern (76 bp):
GTACATCATCAGATAAATCGAAAGAAATATACCGGCACACACTGTGCATCATCAAACAAGCCAAA
ACAATTATACT
Found at i:34670013 original size:35 final size:36
Alignment explanation
Indices: 34669974--34670041 Score: 104
Period size: 36 Copynumber: 1.9 Consensus size: 36
34669964 AACTAAAAAT
34669974 ATTAACAAATA-TATATA-TTTTTATAATTTTTAATA
1 ATTAA-AAATATTATATATTTTTTATAATTTTTAATA
*
34670009 ATTAAAAATATTATATATTTTTTATACTTTTTA
1 ATTAAAAATATTATATATTTTTTATAATTTTTA
34670042 TTTTTTAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
34 5 0.17
35 11 0.37
36 14 0.47
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (36 bp):
ATTAAAAATATTATATATTTTTTATAATTTTTAATA
Found at i:34670055 original size:16 final size:16
Alignment explanation
Indices: 34670024--34670056 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
34670014 AAATATTATA
*
34670024 TATTTTTTATACTTTT
1 TATTTTTTAAACTTTT
34670040 TATTTTTTAAA-TTTT
1 TATTTTTTAAACTTTT
34670055 TA
1 TA
34670057 AACAATTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.73
Consensus pattern (16 bp):
TATTTTTTAAACTTTT
Found at i:34676995 original size:11 final size:13
Alignment explanation
Indices: 34676970--34677001 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
34676960 TAGTTTATTA
34676970 ATATTTTAAATTG
1 ATATTTTAAATTG
34676983 AT-TTTTAAA-TG
1 ATATTTTAAATTG
34676994 ATATTTTA
1 ATATTTTA
34677002 CTATTTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 4 0.22
12 12 0.67
13 2 0.11
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (13 bp):
ATATTTTAAATTG
Found at i:34681013 original size:41 final size:41
Alignment explanation
Indices: 34680966--34681321 Score: 523
Period size: 41 Copynumber: 8.7 Consensus size: 41
34680956 GGTTTTAAAA
* * *
34680966 CCTAGCAGGCTAAGTGCCGGTGATCTAAATCAGGTTACAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
*
34681007 CCTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
*
34681048 CCTAGCAGGCTAAGTGCCGGTGATTTGAATCAGGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
* *
34681089 CCTAGTAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAA
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
* * *
34681130 CCTAGCAGGCTAAGTGCCGGTGAACTGGATTAGGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
* *
34681171 TCTAGCAGGCTAAGTGCTGGTGATCTGAATCAGGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
* * *
34681212 CCTAGCAGGCTAAGTGCCGGTGAACTGGATTAGGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
* *
34681253 CCTAGCAGGCTAAGTGCTGGTGATCTGAATCAGGCTTTAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
* * *
34681294 CCTAACAAGCTAAGTGCCAGTGAATCTG
1 CCTAGCAGGCTAAGTGCCGGTG-ATCTG
34681322 TTTATATTAA
Statistics
Matches: 281, Mismatches: 33, Indels: 1
0.89 0.10 0.00
Matches are distributed among these distances:
41 276 0.98
42 5 0.02
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (41 bp):
CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
Found at i:34683320 original size:102 final size:102
Alignment explanation
Indices: 34683153--34683338 Score: 261
Period size: 102 Copynumber: 1.8 Consensus size: 102
34683143 AAAGTGATGG
* * * * *
34683153 TCACGTGTGTAGTACTATGTGCAGTCTACTACGTGTACCGGAATGATGGGTCGCATGTGTAAGTA
1 TCACGTGTGTAGTACTATGTACAGGCTACTACATGCACCGGAATGATGGGTCACATGTGTAAGTA
34683218 CTATGTGCAGGCTACTATGCGTATCGGATAGCTTCAA
66 CTATGTGCAGGCTACTATGCGTATCGGATAGCTTCAA
*
34683255 TCACGTGTGTAGTACTATGTACAGGCTACTACATGCATCGG-ATGGAAAT-GGTCACATGTGT-A
1 TCACGTGTGTAGTACTATGTACAGGCTACTACATGCACCGGAAT-G--ATGGGTCACATGTGTAA
*
34683317 GTACTATGTGTAGGCTACTATG
63 GTACTATGTGCAGGCTACTATG
34683339 TGAACCGGGT
Statistics
Matches: 74, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
101 2 0.03
102 59 0.80
103 11 0.15
104 2 0.03
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.31
Consensus pattern (102 bp):
TCACGTGTGTAGTACTATGTACAGGCTACTACATGCACCGGAATGATGGGTCACATGTGTAAGTA
CTATGTGCAGGCTACTATGCGTATCGGATAGCTTCAA
Found at i:34683416 original size:44 final size:45
Alignment explanation
Indices: 34683342--34683433 Score: 132
Period size: 44 Copynumber: 2.1 Consensus size: 45
34683332 TACTATGTGA
*
34683342 ACCGGGTACCATTGACTATAAAGGTGGTTGCAATATGCTGATTCC
1 ACCGAGTACCATTGACTATAAAGGTGGTTGCAATATGCTGATTCC
* * * *
34683387 ACCGAGTATCATTGATTAT-AAGGTGGTTGCTATGTGCTGATTCC
1 ACCGAGTACCATTGACTATAAAGGTGGTTGCAATATGCTGATTCC
34683431 ACC
1 ACC
34683434 ATGTATTTGT
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 26 0.62
45 16 0.38
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.32
Consensus pattern (45 bp):
ACCGAGTACCATTGACTATAAAGGTGGTTGCAATATGCTGATTCC
Found at i:34691929 original size:91 final size:90
Alignment explanation
Indices: 34691752--34691929 Score: 232
Period size: 91 Copynumber: 2.0 Consensus size: 90
34691742 GTGGCAGGTG
* * * *
34691752 AATACACTGTCAGTAGTTGTGAATACACAATGGGTTTGTAGATAAAAGCTACTAGTAAAAGTTGT
1 AATACACTGTCAATAGTTGTGAATACACAATGGCTTTGCAGATAAAAACTACTAGT-AAAGTTGT
* *
34691817 GGGTAAACCACCAGTGCTTGCAAGTT
65 GGATAAACCACCACTGCTTGCAAGTT
* * *
34691843 AATACATTGTCAATAGGTTGTGAATGCATAATGGCTTTGCAGATAAAAACTACTAGT-AAGTTTG
1 AATACACTGTCAATA-GTTGTGAATACACAATGGCTTTGCAGATAAAAACTACTAGTAAAG-TTG
*
34691907 TGGATAAACCACCACTGTTTGCA
64 TGGATAAACCACCACTGCTTGCA
34691930 GATAATTTGC
Statistics
Matches: 75, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
90 3 0.04
91 36 0.48
92 36 0.48
ACGTcount: A:0.34, C:0.15, G:0.21, T:0.30
Consensus pattern (90 bp):
AATACACTGTCAATAGTTGTGAATACACAATGGCTTTGCAGATAAAAACTACTAGTAAAGTTGTG
GATAAACCACCACTGCTTGCAAGTT
Found at i:34694347 original size:22 final size:22
Alignment explanation
Indices: 34694319--34694378 Score: 77
Period size: 22 Copynumber: 2.7 Consensus size: 22
34694309 ATTAGCACGA
34694319 TAGTGCTTTCTGTTTAACACAT
1 TAGTGCTTTCTGTTTAACACAT
* * *
34694341 TAGTGCTATCTGATTAGCACAT
1 TAGTGCTTTCTGTTTAACACAT
34694363 TAGTGCTCTT-TGTTTA
1 TAGTGCT-TTCTGTTTA
34694379 GCACCTAGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
22 31 0.97
23 1 0.03
ACGTcount: A:0.22, C:0.17, G:0.17, T:0.45
Consensus pattern (22 bp):
TAGTGCTTTCTGTTTAACACAT
Found at i:34694379 original size:22 final size:21
Alignment explanation
Indices: 34694310--34694382 Score: 76
Period size: 22 Copynumber: 3.3 Consensus size: 21
34694300 CTCTGATTCA
34694310 TTAGCACGA-TAGTGCTTTCTGT
1 TTAGCAC-ATTAGTGCTTT-TGT
* * *
34694332 TTAACACATTAGTGCTATCTGA
1 TTAGCACATTAGTGCT-TTTGT
34694354 TTAGCACATTAGTGCTCTTTGT
1 TTAGCACATTAGTGCT-TTTGT
34694376 TTAGCAC
1 TTAGCAC
34694383 CTAGGTGCTC
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
21 1 0.02
22 40 0.95
23 1 0.02
ACGTcount: A:0.23, C:0.19, G:0.18, T:0.40
Consensus pattern (21 bp):
TTAGCACATTAGTGCTTTTGT
Found at i:34694391 original size:44 final size:44
Alignment explanation
Indices: 34694309--34694396 Score: 101
Period size: 44 Copynumber: 2.0 Consensus size: 44
34694299 TCTCTGATTC
*
34694309 ATTAGCACGATAGTGCTTTCTGTTTAACACATTAGTGCTATCTG
1 ATTAGCACGATAGTGCTTTCTGTTTAACACACTAGTGCTATCTG
* *
34694353 ATTAGCAC-ATTAGTGCTCTT-TGTTTAGCAC-CTAGGTGCTCTCTG
1 ATTAGCACGA-TAGTGCT-TTCTGTTTAACACACTA-GTGCTATCTG
34694397 TTCTGTTATA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
43 3 0.08
44 33 0.87
45 2 0.05
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (44 bp):
ATTAGCACGATAGTGCTTTCTGTTTAACACACTAGTGCTATCTG
Found at i:34694704 original size:17 final size:17
Alignment explanation
Indices: 34694674--34694709 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
34694664 ATAATTTTGG
*
34694674 TAAATGAAATAAATGAA
1 TAAATGAAAGAAATGAA
*
34694691 TAAATTAAAGAAATGAA
1 TAAATGAAAGAAATGAA
34694708 TA
1 TA
34694710 CATTTTGTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.64, C:0.00, G:0.11, T:0.25
Consensus pattern (17 bp):
TAAATGAAAGAAATGAA
Found at i:34695681 original size:27 final size:25
Alignment explanation
Indices: 34695643--34695706 Score: 83
Period size: 25 Copynumber: 2.5 Consensus size: 25
34695633 CGACCCACAG
34695643 CTCGTGTGAGCAGGCCTATATTCATAA
1 CTCGTGTGAGCA--CCTATATTCATAA
** *
34695670 CTCGTGTGAGCATTTATATTCATAG
1 CTCGTGTGAGCACCTATATTCATAA
34695695 CTCGTGTGAGCA
1 CTCGTGTGAGCA
34695707 ACTCTATCCC
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
25 22 0.65
27 12 0.35
ACGTcount: A:0.23, C:0.20, G:0.23, T:0.33
Consensus pattern (25 bp):
CTCGTGTGAGCACCTATATTCATAA
Found at i:34695693 original size:25 final size:25
Alignment explanation
Indices: 34695659--34695706 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
34695649 TGAGCAGGCC
34695659 TATATTCATAACTCGTGTGAGCATT
1 TATATTCATAACTCGTGTGAGCATT
*
34695684 TATATTCATAGCTCGTGTGAGCA
1 TATATTCATAACTCGTGTGAGCA
34695707 ACTCTATCCC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.38
Consensus pattern (25 bp):
TATATTCATAACTCGTGTGAGCATT
Found at i:34698598 original size:29 final size:29
Alignment explanation
Indices: 34698566--34698633 Score: 100
Period size: 29 Copynumber: 2.3 Consensus size: 29
34698556 TATCGATTAT
*
34698566 GAAAAGGGATGGTGACGACCATCAACTAC
1 GAAAAGGGATGGTGACAACCATCAACTAC
*
34698595 GAAAAGGGATGGTGATAACCATCAACTAC
1 GAAAAGGGATGGTGACAACCATCAACTAC
* *
34698624 AAAAAAGGAT
1 GAAAAGGGAT
34698634 AGCTTCAGCT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.44, C:0.16, G:0.25, T:0.15
Consensus pattern (29 bp):
GAAAAGGGATGGTGACAACCATCAACTAC
Found at i:34705594 original size:29 final size:29
Alignment explanation
Indices: 34705401--34705597 Score: 211
Period size: 29 Copynumber: 6.8 Consensus size: 29
34705391 TATCGATTAC
*
34705401 GAAAAAGGATGGTGACGACCATCAACTAT
1 GAAAAGGGATGGTGACGACCATCAACTAT
*
34705430 GAAAAGGGATGGTGACAACCATCAACTAT
1 GAAAAGGGATGGTGACGACCATCAACTAT
* *
34705459 CAAAAGGGATGGTGACAACCATCAACTAT
1 GAAAAGGGATGGTGACGACCATCAACTAT
34705488 GAAAAGGGATGGTGACGACCATCGAA-TAT
1 GAAAAGGGATGGTGACGACCATC-AACTAT
* * * * * *
34705517 GAAACGGGATAGCT-TCGACTATCGATTAT
1 GAAAAGGGAT-GGTGACGACCATCAACTAT
* **
34705546 GAAAAGAGATTCTAGA-GACCATCAACTAT
1 GAAAAGGGATGGT-GACGACCATCAACTAT
* *
34705575 GAATAGGGATGGTGATGACCATC
1 GAAAAGGGATGGTGACGACCATC
34705598 GTGATTCCAC
Statistics
Matches: 141, Mismatches: 21, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
28 5 0.04
29 132 0.94
30 4 0.03
ACGTcount: A:0.39, C:0.17, G:0.25, T:0.20
Consensus pattern (29 bp):
GAAAAGGGATGGTGACGACCATCAACTAT
Found at i:34716010 original size:18 final size:19
Alignment explanation
Indices: 34715969--34716013 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
34715959 TAAAAAAAAC
34715969 ATTTTGAAATTGAATAATG
1 ATTTTGAAATTGAATAATG
34715988 A-TTTGCAAA-TGAATAAT-
1 ATTTTG-AAATTGAATAATG
34716005 ATTTTGAAA
1 ATTTTGAAA
34716014 ACGAACGACA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
17 4 0.17
18 16 0.67
19 4 0.17
ACGTcount: A:0.44, C:0.02, G:0.13, T:0.40
Consensus pattern (19 bp):
ATTTTGAAATTGAATAATG
Found at i:34718116 original size:37 final size:37
Alignment explanation
Indices: 34718066--34718144 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
34718056 TTATTACGAA
* * *
34718066 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
34718103 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
34718140 GTCTT
1 GTCTT
34718145 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:34718341 original size:47 final size:47
Alignment explanation
Indices: 34718263--34718613 Score: 594
Period size: 47 Copynumber: 7.5 Consensus size: 47
34718253 CCCTTCGGGA
* * * * * *
34718263 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
34718310 CCTGTCACATATATACAGTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34718357 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
34718404 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
34718451 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34718498 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34718545 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34718592 CTTATCACATATATACACTTTC
1 CTTATCACATATATACACTTTC
34718614 TTGGCTGAAT
Statistics
Matches: 286, Mismatches: 18, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 286 1.00
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:34722717 original size:40 final size:39
Alignment explanation
Indices: 34722649--34722946 Score: 443
Period size: 40 Copynumber: 7.8 Consensus size: 39
34722639 TATAACACCA
**
34722649 GCTCTTCGGGTTTAG-CACGGATATATCACTAGCACGAAT
1 GCTCTTCGGACTTAGTC-CGGATATATCACTAGCACGAAT
*
34722688 GCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAAT
1 GCTCTTCGG-ACTTAGTCCGGATATATCACTAGCACGAAT
34722728 GCTCTTCGGA-TTA--CCGGATATATCACTAGCACGAAT
1 GCTCTTCGGACTTAGTCCGGATATATCACTAGCACGAAT
34722764 GCTCTTCGGACTTAGTCCGGATATATCACTAGCACGAAT
1 GCTCTTCGGACTTAGTCCGGATATATCACTAGCACGAAT
34722803 GCTCTTCGGACTTA--CCGGATATATCACTAGCACGAAT
1 GCTCTTCGGACTTAGTCCGGATATATCACTAGCACGAAT
34722840 GCTCTTCGGAACTTAGTCCGGATATATCACTAGCACGAAT
1 GCTCTTCGG-ACTTAGTCCGGATATATCACTAGCACGAAT
*
34722880 GCTCTTCGGA-TT--CCCGGATATATCACTAGCACGAAT
1 GCTCTTCGGACTTAGTCCGGATATATCACTAGCACGAAT
* *
34722916 GCTCTTCGGGACTTAGCCCGGGTATATCACT
1 GCTCTTC-GGACTTAGTCCGGATATATCACT
34722947 TTCAATTCTC
Statistics
Matches: 241, Mismatches: 6, Indels: 23
0.89 0.02 0.09
Matches are distributed among these distances:
36 62 0.26
37 38 0.16
38 12 0.05
39 48 0.20
40 80 0.33
41 1 0.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.28
Consensus pattern (39 bp):
GCTCTTCGGACTTAGTCCGGATATATCACTAGCACGAAT
Found at i:34722752 original size:76 final size:76
Alignment explanation
Indices: 34722666--34722946 Score: 501
Period size: 76 Copynumber: 3.7 Consensus size: 76
34722656 GGGTTTAGCA
*
34722666 CGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCT
1 CGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATATATCACTAGCACGAATGCT
34722731 CTTCGGATTAC
66 CTTCGGATTAC
34722742 CGGATATATCACTAGCACGAATGCTCTTCGG-ACTTAGTCCGGATATATCACTAGCACGAATGCT
1 CGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATATATCACTAGCACGAATGCT
34722806 CTTCGGACTTAC
66 CTTCGGA-TTAC
34722818 CGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATATATCACTAGCACGAATGCT
1 CGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATATATCACTAGCACGAATGCT
*
34722883 CTTCGGATTCC
66 CTTCGGATTAC
* * *
34722894 CGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGGTATATCACT
1 CGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATATATCACT
34722947 TTCAATTCTC
Statistics
Matches: 198, Mismatches: 5, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
75 39 0.20
76 119 0.60
77 40 0.20
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.27
Consensus pattern (76 bp):
CGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATATATCACTAGCACGAATGCT
CTTCGGATTAC
Found at i:34724237 original size:37 final size:37
Alignment explanation
Indices: 34724159--34724229 Score: 106
Period size: 37 Copynumber: 1.9 Consensus size: 37
34724149 TTATTACGAA
* * *
34724159 GTCTTACCCGGACATAATCTCCACACGAAGTTATAAG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATAAG
*
34724196 GTCTTACCCGGACAAAATCCCCACACGTAGTCAT
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCAT
34724230 CGGGTCTTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 30 1.00
ACGTcount: A:0.31, C:0.31, G:0.15, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATAAG
Found at i:34724433 original size:47 final size:47
Alignment explanation
Indices: 34724355--34724517 Score: 254
Period size: 47 Copynumber: 3.5 Consensus size: 47
34724345 CCCTTCGGGA
* * * * * *
34724355 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
34724402 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34724449 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34724496 CTTATCACATATATACACTTTC
1 CTTATCACATATATACACTTTC
34724518 TTGGCTGAAT
Statistics
Matches: 106, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 106 1.00
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:34728542 original size:40 final size:40
Alignment explanation
Indices: 34728510--34728856 Score: 452
Period size: 40 Copynumber: 8.8 Consensus size: 40
34728500 CCAGCATGAT
* * *
34728510 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** **
34728550 TGCTCTTCGGGGTTTAGCATGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
34728590 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
34728630 TGCTCTTC-GGA-TTAACCTGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
34728668 TGCTCTTC-GAACTTAGTCCGGATATA-CATTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
34728706 TGCTCTTCGGGATTTAACCTGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
34728746 TGCTCTTCGGAACTTAGTCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
34728786 TGCTCTTCGGGATTTAACCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
34728826 TGCT-TTCGGGACTTAGCCCGGGTATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
34728857 TTCAATTCTC
Statistics
Matches: 262, Mismatches: 42, Indels: 7
0.84 0.14 0.02
Matches are distributed among these distances:
38 52 0.20
39 50 0.19
40 160 0.61
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:34730129 original size:37 final size:37
Alignment explanation
Indices: 34730068--34730146 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
34730058 TTATTACGAA
* * * *
34730068 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGAAAAAATCCCCACACGAAGTCATCGG
*
34730105 GTCTTACCCGGAAAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGAAAAAATCCCCACACGAAGTCATCGG
34730142 GTCTT
1 GTCTT
34730147 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGAAAAAATCCCCACACGAAGTCATCGG
Found at i:34730343 original size:47 final size:47
Alignment explanation
Indices: 34730267--34730380 Score: 156
Period size: 47 Copynumber: 2.4 Consensus size: 47
34730257 CTTCGGGACT
* * * *
34730267 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
* * * *
34730314 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
34730361 TATCACATATATACACTTTC
1 TATCACATATATACACTTTC
34730381 TTGGCTGAAT
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 58 1.00
ACGTcount: A:0.27, C:0.32, G:0.09, T:0.32
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
Found at i:34743670 original size:40 final size:39
Alignment explanation
Indices: 34743638--34743713 Score: 107
Period size: 39 Copynumber: 1.9 Consensus size: 39
34743628 GCATTCAGGA
* *
34743638 GTACTAAAGTACAAACAAAGTCACGTATGTGCAATCAAAG
1 GTACCAAAGTACAAA-AAAGGCACGTATGTGCAATCAAAG
* *
34743678 GTACCGAATTACAAAAAAGGCACGTATGTGCAATCA
1 GTACCAAAGTACAAAAAAGGCACGTATGTGCAATCA
34743714 TTAATAATTG
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
39 20 0.62
40 12 0.38
ACGTcount: A:0.43, C:0.18, G:0.18, T:0.20
Consensus pattern (39 bp):
GTACCAAAGTACAAAAAAGGCACGTATGTGCAATCAAAG
Found at i:34752955 original size:25 final size:26
Alignment explanation
Indices: 34752918--34752977 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
34752908 ATGCCACACC
*
34752918 AATAAATAATTT-AAAAATTATAAA-A
1 AATATATAATTTAAAAAATTA-AAAGA
*
34752943 AATATATATTTTAAAAAATTAAAAGA
1 AATATATAATTTAAAAAATTAAAAGA
*
34752969 AAGATATAA
1 AATATATAA
34752978 AAAATTCATA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
25 13 0.45
26 16 0.55
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (26 bp):
AATATATAATTTAAAAAATTAAAAGA
Found at i:34758513 original size:26 final size:26
Alignment explanation
Indices: 34758477--34758542 Score: 105
Period size: 26 Copynumber: 2.5 Consensus size: 26
34758467 TTTGACCCAT
*
34758477 AGCTCGTGTGAGCAGACCCATTTTAC
1 AGCTCGTGTGAGCAGACCCATTTCAC
* *
34758503 AGCTCTTGTGAACAGACCCATTTCAC
1 AGCTCGTGTGAGCAGACCCATTTCAC
34758529 AGCTCGTGTGAGCA
1 AGCTCGTGTGAGCA
34758543 ACGATGTAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (26 bp):
AGCTCGTGTGAGCAGACCCATTTCAC
Found at i:34767367 original size:51 final size:51
Alignment explanation
Indices: 34767229--34767406 Score: 155
Period size: 51 Copynumber: 3.5 Consensus size: 51
34767219 TGATGGTCAT
* * * * *
34767229 GTGTGTAGTACTATTTGCAGGCTACTACGTGTACCAGA-AAGATAGGTCGC
1 GTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAACATAGATCAC
* * * * * *
34767279 AT-TGTAGTACTATGTGCAGGCTTCTATGCGTACCGGATAACTTCGATCAC
1 GTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAACATAGATCAC
* * ** *
34767329 GTGTGTAGTACTATGTGCAGGCTACTACATGTATCGGATAGTGAT-GGTCAC
1 GTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATA-ACATAGATCAC
* * *
34767380 ATGTGCAGTACTATGTGTAGGCTACTA
1 GTGTGTAGTACTATGTGCAGGCTACTA
34767407 TGTGAATCAG
Statistics
Matches: 101, Mismatches: 24, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
49 30 0.30
50 9 0.09
51 61 0.60
52 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (51 bp):
GTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAACATAGATCAC
Found at i:34767680 original size:37 final size:38
Alignment explanation
Indices: 34767611--34767683 Score: 103
Period size: 37 Copynumber: 1.9 Consensus size: 38
34767601 ATGTGTGGAA
* * *
34767611 TTGAATTGAATATTGACTTGAAAATGACAAAGTGAATT
1 TTGAATTAAATAGTGACTTGAAAATGAAAAAGTGAATT
*
34767649 TTGAATTAAATAGTGA-TTGAAAGTGAAAAAGTGAA
1 TTGAATTAAATAGTGACTTGAAAATGAAAAAGTGAA
34767684 ATTATGAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
37 17 0.55
38 14 0.45
ACGTcount: A:0.45, C:0.03, G:0.21, T:0.32
Consensus pattern (38 bp):
TTGAATTAAATAGTGACTTGAAAATGAAAAAGTGAATT
Found at i:34771980 original size:93 final size:90
Alignment explanation
Indices: 34771783--34771982 Score: 231
Period size: 93 Copynumber: 2.2 Consensus size: 90
34771773 TGTTAACATG
* * * *
34771783 CTAGTTTGCTCATAAGAGCAATTTCAACCGATAACACACCAAATGCACATAGTGTAAAGCCCTTA
1 CTAGATTGCTCATAAGAGCAATTTCAACCGATAACACACCAAATACACATAGTGCAAAGCCCATA
*
34771848 GGCTAAATATTCTCCCTCAAGAACA
66 GGCTAAATATTCTCCCCCAAGAACA
* * * * ** *
34771873 CGTCAAATTCCTCATAAGAGCTATTTCCAACTGATAACATGCCAGATACACATAGTGCAAAGCCC
1 C-T-AGATTGCTCATAAGAGCAATTT-CAACCGATAACACACCAAATACACATAGTGCAAAGCCC
34771938 ATAGGCTAAATATTCTCCCCCTATA-ATACA
63 ATAGGCTAAATATTCTCCCCC-A-AGA-ACA
34771968 CTAGATTGCTCATAA
1 CTAGATTGCTCATAA
34771983 AAGTTATTAA
Statistics
Matches: 90, Mismatches: 14, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
90 1 0.01
91 1 0.01
92 18 0.20
93 62 0.69
94 3 0.03
95 5 0.06
ACGTcount: A:0.36, C:0.26, G:0.12, T:0.26
Consensus pattern (90 bp):
CTAGATTGCTCATAAGAGCAATTTCAACCGATAACACACCAAATACACATAGTGCAAAGCCCATA
GGCTAAATATTCTCCCCCAAGAACA
Found at i:34773110 original size:27 final size:27
Alignment explanation
Indices: 34773056--34773111 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
34773046 TACACCCAGT
* *
34773056 AAAATTTTGACGATTTTAATCCCGATA
1 AAAATTTTGACGATTTTAACCCCAATA
*
34773083 AAAATTTTGATGATTTT-ACCCCTAATA
1 AAAATTTTGACGATTTTAACCCC-AATA
34773110 AA
1 AA
34773112 GTTTTGAGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 4 0.16
27 21 0.84
ACGTcount: A:0.39, C:0.14, G:0.09, T:0.38
Consensus pattern (27 bp):
AAAATTTTGACGATTTTAACCCCAATA
Found at i:34779807 original size:64 final size:63
Alignment explanation
Indices: 34779706--34779832 Score: 218
Period size: 64 Copynumber: 2.0 Consensus size: 63
34779696 GCATAGCTCA
* *
34779706 ATCAAAAGATTGCACAATAAACAATAATTTTCGTGTCTAATAAAAATAAATAATACTCTTCAGG
1 ATCAAAAGATTGCACAATAAACAATAATCTTCATGTCTAA-AAAAATAAATAATACTCTTCAGG
*
34779770 ATCAAAAGATTGCACAATAAACAATAATCTTCATGTCTAAAAAAATAAATAGTACTCTTCAGG
1 ATCAAAAGATTGCACAATAAACAATAATCTTCATGTCTAAAAAAATAAATAATACTCTTCAGG
34779833 TCTAAAAAAA
Statistics
Matches: 60, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
63 22 0.37
64 38 0.63
ACGTcount: A:0.47, C:0.15, G:0.09, T:0.28
Consensus pattern (63 bp):
ATCAAAAGATTGCACAATAAACAATAATCTTCATGTCTAAAAAAATAAATAATACTCTTCAGG
Found at i:34779817 original size:28 final size:28
Alignment explanation
Indices: 34779785--34779842 Score: 80
Period size: 28 Copynumber: 2.1 Consensus size: 28
34779775 AAGATTGCAC
*
34779785 AATAAACAATAATCTTCATGTCTAAAAA
1 AATAAACAATAATCTTCAGGTCTAAAAA
* * *
34779813 AATAAATAGTACTCTTCAGGTCTAAAAA
1 AATAAACAATAATCTTCAGGTCTAAAAA
34779841 AA
1 AA
34779843 GAACTGGAGA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.52, C:0.14, G:0.07, T:0.28
Consensus pattern (28 bp):
AATAAACAATAATCTTCAGGTCTAAAAA
Found at i:34784287 original size:20 final size:20
Alignment explanation
Indices: 34784251--34784289 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
34784241 CAGAAATCTC
*
34784251 TCTTTTCTCTCTGTTCTTCT
1 TCTTTTCTCTCTCTTCTTCT
34784271 TCTTTTCTCTAC-CTTCTTC
1 TCTTTTCTCT-CTCTTCTTC
34784290 CTATCTCGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 16 0.94
21 1 0.06
ACGTcount: A:0.03, C:0.33, G:0.03, T:0.62
Consensus pattern (20 bp):
TCTTTTCTCTCTCTTCTTCT
Found at i:34790446 original size:61 final size:61
Alignment explanation
Indices: 34790332--34790449 Score: 148
Period size: 61 Copynumber: 1.9 Consensus size: 61
34790322 TAAAAGAAAT
* * * * * * *
34790332 AATAAATTTAGCTCTTAGTATTTACAAAATTGATCATTTTATTTCTAATTCTAAAAAATTC
1 AATAAATTTAGCCCTTAATATTTACAAAACTGATCAATTCATTCCTAACTCTAAAAAATTC
*
34790393 AATAAATTTGGCCCTTAATATTTACAAAACCT-ATCAATTCATTCCTAACTCTAAAAA
1 AATAAATTTAGCCCTTAATATTTACAAAA-CTGATCAATTCATTCCTAACTCTAAAAA
34790450 TTAAAAAAAT
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
61 47 0.98
62 1 0.02
ACGTcount: A:0.41, C:0.16, G:0.04, T:0.39
Consensus pattern (61 bp):
AATAAATTTAGCCCTTAATATTTACAAAACTGATCAATTCATTCCTAACTCTAAAAAATTC
Found at i:34800243 original size:30 final size:30
Alignment explanation
Indices: 34800157--34800249 Score: 86
Period size: 29 Copynumber: 3.2 Consensus size: 30
34800147 TAAAACACTC
* *
34800157 AACCCATCTC-ATAAAAATTATTTCTTT-AG
1 AACCCATC-CAATCAAAATTATTTTTTTCAG
*
34800186 AACCCATCCAATCAAAATTA-GTTTTTCAG
1 AACCCATCCAATCAAAATTATTTTTTTCAG
* * *
34800215 AACCTATCCTAT-ACAAATTATTTTTTTCAA
1 AACCCATCCAATCA-AAATTATTTTTTTCAG
34800245 AACCC
1 AACCC
34800250 CTAAAGATTA
Statistics
Matches: 52, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
28 6 0.12
29 35 0.67
30 11 0.21
ACGTcount: A:0.38, C:0.24, G:0.03, T:0.35
Consensus pattern (30 bp):
AACCCATCCAATCAAAATTATTTTTTTCAG
Found at i:34800296 original size:22 final size:23
Alignment explanation
Indices: 34800270--34800326 Score: 66
Period size: 22 Copynumber: 2.6 Consensus size: 23
34800260 AATAAAACCC
*
34800270 TAAAATCCTAAACACTTAAA-AT
1 TAAAAACCTAAACACTTAAATAT
34800292 TAAAAACCTTAAA-ACTTAAATAT
1 TAAAAACC-TAAACACTTAAATAT
*
34800315 T-AAACCCTAAAC
1 TAAAAACCTAAAC
34800327 CTAAATCTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
21 4 0.13
22 19 0.63
23 7 0.23
ACGTcount: A:0.54, C:0.19, G:0.00, T:0.26
Consensus pattern (23 bp):
TAAAAACCTAAACACTTAAATAT
Found at i:34800304 original size:15 final size:17
Alignment explanation
Indices: 34800279--34800311 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
34800269 CTAAAATCCT
34800279 AAACACTTAAAA-TTAA
1 AAACACTTAAAACTTAA
34800295 AAAC-CTTAAAACTTAA
1 AAACACTTAAAACTTAA
34800311 A
1 A
34800312 TATTAAACCC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.61, C:0.15, G:0.00, T:0.24
Consensus pattern (17 bp):
AAACACTTAAAACTTAA
Found at i:34800312 original size:50 final size:53
Alignment explanation
Indices: 34800257--34800361 Score: 128
Period size: 57 Copynumber: 2.0 Consensus size: 53
34800247 CCCCTAAAGA
*
34800257 TTAAATA-AAACCCT-A-AAATCCTAAACACTT-AAAATTAAAAACCTTAAAAC
1 TTAAATATAAACCCTAACAAAT-CTAAACACTTAAAAAATAAAAACCTTAAAAC
34800307 TTAAATATTAAACCCTAAACCTAAATCTAAACACTTAAAAAATAAAAACCTTAAA
1 TTAAATA-TAAACCCT-AA-C-AAATCTAAACACTTAAAAAATAAAAACCTTAAA
34800362 TCCTAATTGG
Statistics
Matches: 46, Mismatches: 1, Indels: 9
0.82 0.02 0.16
Matches are distributed among these distances:
50 7 0.15
52 7 0.15
54 1 0.02
56 10 0.22
57 21 0.46
ACGTcount: A:0.56, C:0.19, G:0.00, T:0.25
Consensus pattern (53 bp):
TTAAATATAAACCCTAACAAATCTAAACACTTAAAAAATAAAAACCTTAAAAC
Found at i:34802517 original size:38 final size:38
Alignment explanation
Indices: 34802474--34802569 Score: 115
Period size: 38 Copynumber: 2.5 Consensus size: 38
34802464 GGATTGGTTG
* *
34802474 GAAATGGCTATCTACAGGCTCTTTA-AAGTGACACCATCA
1 GAAATGGTTATCTACAGGCTCTTCAGAA-TGACACCAT-A
* *
34802513 -AAATGGTTATATACAGGCTGTTCAGAATGACACCATA
1 GAAATGGTTATCTACAGGCTCTTCAGAATGACACCATA
*
34802550 GAAATGGTTATCTATAGGCT
1 GAAATGGTTATCTACAGGCT
34802570 TTTCGGAGCG
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
37 1 0.02
38 46 0.94
39 2 0.04
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (38 bp):
GAAATGGTTATCTACAGGCTCTTCAGAATGACACCATA
Found at i:34802583 original size:38 final size:38
Alignment explanation
Indices: 34802503--34802590 Score: 99
Period size: 38 Copynumber: 2.3 Consensus size: 38
34802493 TCTTTAAAGT
*
34802503 GACACCATCA-AAATGGTTATATACAGGCTGTTCAGAAT
1 GACACCAT-AGAAATGGTTATATACAGGCTGTTCAGAAC
* * * * *
34802541 GACACCATAGAAATGGTTATCTATAGGCTTTTCGGAGC
1 GACACCATAGAAATGGTTATATACAGGCTGTTCAGAAC
34802579 GACACCAT-GAAA
1 GACACCATAGAAA
34802591 ACAGTCTACA
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
37 5 0.12
38 38 0.88
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.25
Consensus pattern (38 bp):
GACACCATAGAAATGGTTATATACAGGCTGTTCAGAAC
Found at i:34809842 original size:23 final size:23
Alignment explanation
Indices: 34809811--34809856 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
34809801 TTGATTTTAC
*
34809811 TTTTTTTTTATTTTACCACTGTA
1 TTTTATTTTATTTTACCACTGTA
34809834 TTTTATTTTATTTTACCACTGTA
1 TTTTATTTTATTTTACCACTGTA
34809857 GTTCTAACAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.20, C:0.13, G:0.04, T:0.63
Consensus pattern (23 bp):
TTTTATTTTATTTTACCACTGTA
Found at i:34818655 original size:134 final size:135
Alignment explanation
Indices: 34818409--34818680 Score: 492
Period size: 134 Copynumber: 2.0 Consensus size: 135
34818399 AATAAAATGG
34818409 ATAAATTAGTTTATGTACGTTAGATTAAAGAGCAAATTAAATTTTTTTGTTAAAAAGTTTATCAA
1 ATAAATTAGTTTATGTACGTTAGATTAAAGAGCAAATTAAATTTTTTTGTTAAAAAGTTTATCAA
*
34818474 ATTGTACTGTTAAAAATTGGCGTGATTGATGGTATAATCGGCTAGTGATGTGATGTGCCATGTGT
66 ATTGTACTGTTAAAAATTGGCGTGATTGATGGTATAATCGGCCAGTGATGTGATGTGCCATGTGT
34818539 ATTTT
131 ATTTT
* *
34818544 ATAAATTAGTTTATGTATGTTAGATTTAAGAGCAAATT-AATTTTTTTGTTAAAAAGTTTATCAA
1 ATAAATTAGTTTATGTACGTTAGATTAAAGAGCAAATTAAATTTTTTTGTTAAAAAGTTTATCAA
* *
34818608 ATTGTACTGTTAAAAATTGGTGTGATTGATGGTATAATCGGCCAGTGATGTGATGTGTCATGTGT
66 ATTGTACTGTTAAAAATTGGCGTGATTGATGGTATAATCGGCCAGTGATGTGATGTGCCATGTGT
34818673 ATTTT
131 ATTTT
34818678 ATA
1 ATA
34818681 TTGATATATA
Statistics
Matches: 132, Mismatches: 5, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
134 96 0.73
135 36 0.27
ACGTcount: A:0.32, C:0.06, G:0.20, T:0.42
Consensus pattern (135 bp):
ATAAATTAGTTTATGTACGTTAGATTAAAGAGCAAATTAAATTTTTTTGTTAAAAAGTTTATCAA
ATTGTACTGTTAAAAATTGGCGTGATTGATGGTATAATCGGCCAGTGATGTGATGTGCCATGTGT
ATTTT
Found at i:34820815 original size:17 final size:18
Alignment explanation
Indices: 34820790--34820823 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
34820780 TTTGAAAGGC
34820790 AAGCAAAAAAAA-AAAAA
1 AAGCAAAAAAAAGAAAAA
*
34820807 AAGCTAAAAAAAGAAAA
1 AAGCAAAAAAAAGAAAA
34820824 TGACACTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.82, C:0.06, G:0.09, T:0.03
Consensus pattern (18 bp):
AAGCAAAAAAAAGAAAAA
Found at i:34823485 original size:22 final size:22
Alignment explanation
Indices: 34823460--34823501 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
34823450 ATTAATTTTT
*
34823460 TTATTTTCCATCAATTATGTTG
1 TTATTTTCCAGCAATTATGTTG
34823482 TTATTTTCCAGCAATTATGT
1 TTATTTTCCAGCAATTATGT
34823502 ACTTATTTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.24, C:0.14, G:0.10, T:0.52
Consensus pattern (22 bp):
TTATTTTCCAGCAATTATGTTG
Found at i:34823507 original size:22 final size:22
Alignment explanation
Indices: 34823460--34823509 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 22
34823450 ATTAATTTTT
* **
34823460 TTATTTTCCATCAATTATGTTG
1 TTATTTTCCAGCAATTATGTAC
34823482 TTATTTTCCAGCAATTATGTAC
1 TTATTTTCCAGCAATTATGTAC
34823504 TTATTT
1 TTATTT
34823510 CATGAAATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.24, C:0.14, G:0.08, T:0.54
Consensus pattern (22 bp):
TTATTTTCCAGCAATTATGTAC
Found at i:34828376 original size:19 final size:19
Alignment explanation
Indices: 34828354--34828391 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
34828344 TCAATCATCC
34828354 CTCATCTCATCA-TCTCTCA
1 CTCAT-TCATCATTCTCTCA
34828373 CTCATTCATCATTCTCTCA
1 CTCATTCATCATTCTCTCA
34828392 ACTCTTTTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.21, C:0.39, G:0.00, T:0.39
Consensus pattern (19 bp):
CTCATTCATCATTCTCTCA
Found at i:34857737 original size:24 final size:25
Alignment explanation
Indices: 34857710--34857757 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
34857700 TATAGTCTAT
* *
34857710 CTATAGTAGTCTCAGTATA-ACTAC
1 CTATAGCAGTCTCAGGATATACTAC
*
34857734 CTATAGCAGTTTCAGGATATACTA
1 CTATAGCAGTCTCAGGATATACTA
34857758 TTAAAGACAG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 16 0.80
25 4 0.20
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.33
Consensus pattern (25 bp):
CTATAGCAGTCTCAGGATATACTAC
Found at i:34858106 original size:18 final size:19
Alignment explanation
Indices: 34858085--34858133 Score: 57
Period size: 18 Copynumber: 2.6 Consensus size: 19
34858075 AATCATATCG
34858085 TTCATTTCAAAAAT-ATTA
1 TTCATTTCAAAAATCATTA
* *
34858103 TTCATTT-ACAAATCGTTA
1 TTCATTTCAAAAATCATTA
34858121 TTCAATTTCAAAA
1 TTC-ATTTCAAAA
34858134 TGTTTTCTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
17 5 0.20
18 13 0.52
19 4 0.16
20 3 0.12
ACGTcount: A:0.41, C:0.14, G:0.02, T:0.43
Consensus pattern (19 bp):
TTCATTTCAAAAATCATTA
Found at i:34860786 original size:25 final size:29
Alignment explanation
Indices: 34860738--34860801 Score: 73
Period size: 28 Copynumber: 2.3 Consensus size: 29
34860728 AGATGGCTAT
*
34860738 TTTTTTATGTTCATGTTCATACCA-A-TT-G
1 TTTTTT-T-TTCATGTTCACACCAGATTTAG
34860766 TTTTTTTTTCA-GTTCACACCAGATTTAG
1 TTTTTTTTTCATGTTCACACCAGATTTAG
34860794 TTTTTTTT
1 TTTTTTTT
34860802 AAGTTTTAAG
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
25 9 0.28
26 5 0.16
27 3 0.09
28 15 0.47
ACGTcount: A:0.19, C:0.14, G:0.09, T:0.58
Consensus pattern (29 bp):
TTTTTTTTTCATGTTCACACCAGATTTAG
Found at i:34860810 original size:7 final size:7
Alignment explanation
Indices: 34860798--34860823 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
34860788 ATTTAGTTTT
34860798 TTTTAAG
1 TTTTAAG
34860805 TTTTAAG
1 TTTTAAG
34860812 TTTTAAG
1 TTTTAAG
34860819 TTTTA
1 TTTTA
34860824 TTTCTCGTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.12, T:0.62
Consensus pattern (7 bp):
TTTTAAG
Found at i:34870262 original size:27 final size:27
Alignment explanation
Indices: 34870231--34870283 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
34870221 TAAAAGCAGC
*
34870231 TAAAATAAAAGTTTTTCATTTAATTTT
1 TAAAATAAAAGTTTTTAATTTAATTTT
34870258 TAAAATAAAAGTTTTTAATTTAATTT
1 TAAAATAAAAGTTTTTAATTTAATTT
34870284 AATTTTTATA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (27 bp):
TAAAATAAAAGTTTTTAATTTAATTTT
Found at i:34871146 original size:25 final size:26
Alignment explanation
Indices: 34871092--34871146 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 26
34871082 TTTCTCCAAA
* *
34871092 ATTTTAATTTTATTTAATTATTTGAT
1 ATTTTAATTTTATTAAATTATTTCAT
34871118 -TTTTCAA-TTTATTAAATTA-TTCAT
1 ATTTT-AATTTTATTAAATTATTTCAT
34871142 ATTTT
1 ATTTT
34871147 GTGCAAATTG
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
24 4 0.16
25 19 0.76
26 2 0.08
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.64
Consensus pattern (26 bp):
ATTTTAATTTTATTAAATTATTTCAT
Found at i:34879756 original size:75 final size:75
Alignment explanation
Indices: 34879628--34879947 Score: 354
Period size: 75 Copynumber: 4.3 Consensus size: 75
34879618 ATAATGAATA
* * *
34879628 TTGTCGGTTTATCTGACTAGCGTTGGGCGTAACTTTCATCTGTTTATCTGACTAGTGCTAGGCAC
1 TTGTCGGTTTATCTGACTAGCGCTGGGCGCAACTTTCATCAGTTTATCTGACTAGTGCTAGGCAC
34879693 ACCATTATAT
66 ACCATTATAT
* * * * * *
34879703 TTGTTGGTTTATCTGATTAGCGCCGGGTGCAATTTTCTTCAGTTTATCTGACTAGTGCTAGGCAC
1 TTGTCGGTTTATCTGACTAGCGCTGGGCGCAACTTTCATCAGTTTATCTGACTAGTGCTAGGCAC
34879768 ACCATTATAT
66 ACCATTATAT
* * * * * * * *
34879778 TTGTTGGTTTATCCGACTAGAGTTAGGCGCAACTTTCATTAGTTTATCTGACTAATG-TTGCGCA
1 TTGTCGGTTTATCTGACTAGCGCTGGGCGCAACTTTCATCAGTTTATCTGACTAGTGCTAG-GCA
* *
34879842 CAACATTTTAT
65 CACCATTATAT
* * * * * * *
34879853 CTGTCGGTTTATCCGACTAGCACTTGGCGCAACTTTCATCAGTTTATCTTACTAGTGTTGGGCAC
1 TTGTCGGTTTATCTGACTAGCGCTGGGCGCAACTTTCATCAGTTTATCTGACTAGTGCTAGGCAC
*
34879918 ATCATTATAT
66 ACCATTATAT
* * *
34879928 ATATCGGTTTATCTAACTAG
1 TTGTCGGTTTATCTGACTAG
34879948 TGCAGGGTGT
Statistics
Matches: 204, Mismatches: 39, Indels: 4
0.83 0.16 0.02
Matches are distributed among these distances:
74 2 0.01
75 200 0.98
76 2 0.01
ACGTcount: A:0.22, C:0.19, G:0.20, T:0.39
Consensus pattern (75 bp):
TTGTCGGTTTATCTGACTAGCGCTGGGCGCAACTTTCATCAGTTTATCTGACTAGTGCTAGGCAC
ACCATTATAT
Found at i:34885389 original size:67 final size:67
Alignment explanation
Indices: 34885316--34885442 Score: 229
Period size: 67 Copynumber: 1.9 Consensus size: 67
34885306 TTTAACAAAA
34885316 TTTTTTCTCTCATTTTCTCTCTTGCCAAACACCACTTTTT-TTCTTCAAAACACATGGTTGCTGC
1 TTTTTTCTCTCATTTTCTCTCTTGCCAAACACCA-TTTTTCTTCTTCAAAACACATGGTTGCTGC
34885380 CAT
65 CAT
*
34885383 TTTTTTCTCTCATTTTCTCTCTTGCCAAACACCATTTTTCTTCTTCAAAACATATGGTTG
1 TTTTTTCTCTCATTTTCTCTCTTGCCAAACACCATTTTTCTTCTTCAAAACACATGGTTG
34885443 GCTCATTTCA
Statistics
Matches: 58, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
66 5 0.09
67 53 0.91
ACGTcount: A:0.20, C:0.27, G:0.07, T:0.46
Consensus pattern (67 bp):
TTTTTTCTCTCATTTTCTCTCTTGCCAAACACCATTTTTCTTCTTCAAAACACATGGTTGCTGCC
AT
Found at i:34886359 original size:67 final size:68
Alignment explanation
Indices: 34886279--34886405 Score: 195
Period size: 67 Copynumber: 1.9 Consensus size: 68
34886269 TGAAATGAGC
*
34886279 CAACCATATGTTTTGAAGAAGAA-AAATGGTGTTTGGCAAGA-AAAAAATGAGAGAAAAAAAATG
1 CAACCATATGTTTTGAAGAA-AAGAAATGGTGTTTGACAAGAGAAAAAATGAGAGAAAAAAAATG
34886342 GCAG
65 GCAG
* * *
34886346 CAACCATGTGTTTTGAAGAAAAGAAGTGGTGTTTGACAAGAGAGAAAATGAGAGAAAAAA
1 CAACCATATGTTTTGAAGAAAAGAAATGGTGTTTGACAAGAGAAAAAATGAGAGAAAAAA
34886406 TTTTGTTAAA
Statistics
Matches: 54, Mismatches: 4, Indels: 3
0.89 0.07 0.05
Matches are distributed among these distances:
66 2 0.04
67 35 0.65
68 17 0.31
ACGTcount: A:0.48, C:0.07, G:0.25, T:0.20
Consensus pattern (68 bp):
CAACCATATGTTTTGAAGAAAAGAAATGGTGTTTGACAAGAGAAAAAATGAGAGAAAAAAAATGG
CAG
Found at i:34890251 original size:19 final size:20
Alignment explanation
Indices: 34890216--34890273 Score: 66
Period size: 19 Copynumber: 2.9 Consensus size: 20
34890206 TAGAGGTAGG
34890216 GAAAATAAAAATAAAAAGAA
1 GAAAATAAAAATAAAAAGAA
34890236 GAAAA-AAAAA-AGAAAAGAA
1 GAAAATAAAAATA-AAAAGAA
*
34890255 GGGAAATGAAAAATAAAAA
1 -GAAAAT-AAAAATAAAAA
34890274 AAGGTACAAG
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
18 1 0.03
19 12 0.38
20 9 0.28
22 9 0.28
23 1 0.03
ACGTcount: A:0.78, C:0.00, G:0.16, T:0.07
Consensus pattern (20 bp):
GAAAATAAAAATAAAAAGAA
Found at i:34894990 original size:21 final size:21
Alignment explanation
Indices: 34894961--34895002 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
34894951 ACGGAAATTG
34894961 AAAGGGTAAAACATTTTCCCT
1 AAAGGGTAAAACATTTTCCCT
* **
34894982 AAAGTGTAACCCATTTTCCCT
1 AAAGGGTAAAACATTTTCCCT
34895003 TGTTTTGGAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.33, C:0.24, G:0.12, T:0.31
Consensus pattern (21 bp):
AAAGGGTAAAACATTTTCCCT
Found at i:34917195 original size:8 final size:7
Alignment explanation
Indices: 34917169--34917193 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
34917159 ATTGCATAGT
34917169 AAAATAA
1 AAAATAA
34917176 AAAATAA
1 AAAATAA
34917183 AAAATAA
1 AAAATAA
34917190 AAAA
1 AAAA
34917194 ATTATAAAGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAATAA
Found at i:34923105 original size:21 final size:21
Alignment explanation
Indices: 34923073--34923118 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
34923063 TTACAACACC
*
34923073 AAAAAAACATATATTTGAT-T
1 AAAAAAACATATATTTAATAT
*
34923093 AAAAAATATATATATTTAATAT
1 AAAAAA-ACATATATTTAATAT
34923115 AAAA
1 AAAA
34923119 TTTAGGCCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 6 0.27
21 11 0.50
22 5 0.23
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (21 bp):
AAAAAAACATATATTTAATAT
Found at i:34929125 original size:12 final size:12
Alignment explanation
Indices: 34929085--34929134 Score: 52
Period size: 12 Copynumber: 4.3 Consensus size: 12
34929075 TAAGTCTAAG
34929085 AAAATAACAATA
1 AAAATAACAATA
*
34929097 AAAAGAAC--TA
1 AAAATAACAATA
34929107 AAAATAACAATA
1 AAAATAACAATA
*
34929119 AACATAA-ACATA
1 AAAATAACA-ATA
34929131 AAAA
1 AAAA
34929135 AAGAAAAAGA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
10 9 0.29
11 1 0.03
12 21 0.68
ACGTcount: A:0.74, C:0.10, G:0.02, T:0.14
Consensus pattern (12 bp):
AAAATAACAATA
Found at i:34929808 original size:13 final size:13
Alignment explanation
Indices: 34929790--34929815 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
34929780 ACGCCCATGT
34929790 GCTAGTTCCAACG
1 GCTAGTTCCAACG
34929803 GCTAGTTCCAACG
1 GCTAGTTCCAACG
34929816 AAAATATTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.31, G:0.23, T:0.23
Consensus pattern (13 bp):
GCTAGTTCCAACG
Found at i:34930486 original size:24 final size:25
Alignment explanation
Indices: 34930441--34930493 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 25
34930431 TCCAAGCTGT
34930441 ATAA-CGGGAAGCTCATAAGAGCC-
1 ATAATCGGGAAGCTCATAAGAGCCA
* **
34930464 ATAATCGGGAAGCTTATGCGAGCCA
1 ATAATCGGGAAGCTCATAAGAGCCA
34930489 ATAAT
1 ATAAT
34930494 AGGTAGCTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 4 0.16
24 16 0.64
25 5 0.20
ACGTcount: A:0.38, C:0.19, G:0.25, T:0.19
Consensus pattern (25 bp):
ATAATCGGGAAGCTCATAAGAGCCA
Found at i:34930561 original size:73 final size:73
Alignment explanation
Indices: 34930460--34930596 Score: 163
Period size: 73 Copynumber: 1.9 Consensus size: 73
34930450 AGCTCATAAG
* * * *
34930460 AGCCATAATCGGGAAGCTTATGCGAGCCAATAATAGG-TAGCTTCGAAGAGCCATTAAT-AGGAA
1 AGCCATAATCGGGAAGCTTAAGCAAGCC-ATAATAGGAAAGCTCCGAAGAGCCATTAATCAGGAA
34930523 ACTTTAGAT
65 ACTTTAGAT
* * *
34930532 AGCCATATATCGGGAAG-TTCAAGCAAGCCATTATTGGAAAGCTCCGGAGAGCCATTAATCAGGA
1 AGCCATA-ATCGGGAAGCTT-AAGCAAGCCATAATAGGAAAGCTCCGAAGAGCCATTAATCAGGA
34930596 A
64 A
34930597 GCTCACAAAG
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
72 15 0.28
73 34 0.63
74 5 0.09
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (73 bp):
AGCCATAATCGGGAAGCTTAAGCAAGCCATAATAGGAAAGCTCCGAAGAGCCATTAATCAGGAAA
CTTTAGAT
Found at i:34930608 original size:26 final size:26
Alignment explanation
Indices: 34930579--34930660 Score: 94
Period size: 26 Copynumber: 3.2 Consensus size: 26
34930569 AAAGCTCCGG
34930579 AGAGCCATTAATCAGGAAGCTCACAA
1 AGAGCCATTAATCAGGAAGCTCACAA
* ** *
34930605 AGAGCCTTTAATTGGGAAGCTCACGA
1 AGAGCCATTAATCAGGAAGCTCACAA
* *
34930631 AGAGTCATATAA-CAGGACGCTCACAA
1 AGAGCCAT-TAATCAGGAAGCTCACAA
34930657 AGAG
1 AGAG
34930661 TTGCGGTATG
Statistics
Matches: 45, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
26 42 0.93
27 3 0.07
ACGTcount: A:0.39, C:0.21, G:0.23, T:0.17
Consensus pattern (26 bp):
AGAGCCATTAATCAGGAAGCTCACAA
Found at i:34933081 original size:13 final size:14
Alignment explanation
Indices: 34933050--34933083 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
34933040 CTGAAAATAA
34933050 AAAAAATCACTATC
1 AAAAAATCACTATC
34933064 AAAAAATCACTATC
1 AAAAAATCACTATC
34933078 AAAAAA
1 AAAAAA
34933084 ATAAAATAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.65, C:0.18, G:0.00, T:0.18
Consensus pattern (14 bp):
AAAAAATCACTATC
Found at i:34937356 original size:5 final size:5
Alignment explanation
Indices: 34937346--34937373 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
34937336 AAAATTAGCT
34937346 AAATA AAATA AAATA AAATA AAATA AAA
1 AAATA AAATA AAATA AAATA AAATA AAA
34937374 AATTGCTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAATA
Found at i:34940208 original size:21 final size:20
Alignment explanation
Indices: 34940184--34940223 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
34940174 TAACTAATCC
*
34940184 GTAATTAATAGTTAAGGTTGT
1 GTAATTAATAGAT-AGGTTGT
34940205 GTAATTAATAGATAGGTTG
1 GTAATTAATAGATAGGTTG
34940224 ATATTATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.35, C:0.00, G:0.25, T:0.40
Consensus pattern (20 bp):
GTAATTAATAGATAGGTTGT
Found at i:34942127 original size:25 final size:25
Alignment explanation
Indices: 34942099--34942150 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
34942089 AATCGTCTTT
34942099 AAATCAATTCGAATAAAATCAAATC
1 AAATCAATTCGAATAAAATCAAATC
** * *
34942124 AAATTGATTGGAATCAAATCAAATC
1 AAATCAATTCGAATAAAATCAAATC
34942149 AA
1 AA
34942151 GATATTTGTC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.54, C:0.13, G:0.08, T:0.25
Consensus pattern (25 bp):
AAATCAATTCGAATAAAATCAAATC
Found at i:34947758 original size:18 final size:18
Alignment explanation
Indices: 34947703--34947758 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
34947693 TGTGGGCTGC
*
34947703 TGTTGGTTTGGGCTGGGGT
1 TGTT-GTTTGGGCTAGGGT
* **
34947722 TATTAATTGGGCTTA-GGT
1 TGTTGTTTGGGC-TAGGGT
34947740 TGTTGTTTGGGCTAGGGT
1 TGTTGTTTGGGCTAGGGT
34947758 T
1 T
34947759 ACAATTAGGT
Statistics
Matches: 28, Mismatches: 7, Indels: 5
0.70 0.17 0.12
Matches are distributed among these distances:
17 2 0.07
18 22 0.79
19 4 0.14
ACGTcount: A:0.09, C:0.05, G:0.41, T:0.45
Consensus pattern (18 bp):
TGTTGTTTGGGCTAGGGT
Found at i:34948344 original size:138 final size:138
Alignment explanation
Indices: 34948186--34948453 Score: 385
Period size: 138 Copynumber: 1.9 Consensus size: 138
34948176 TTCAATATGA
* * * *
34948186 TCTGCTCTACTGCGACTTTAGAGAGATAAGA-TCTGTTATGGTAGATTTCATCTGACTTAATGCA
1 TCTGCTCCACTGCAACTTTAGAGAGATAAGACT-TGTTATGGTAGATTTCATCCGACCTAATGCA
* * * *
34948250 ACTTCAGAGGTATAGGATTCATCGTTTTAATCCGCTCCATTACAACTTCAGGGAGATAGGATTAG
65 ACTTCAAAGGTACAGGATTCATCGTTTTAATCCGCTCCACTACAACTTCAGGGAAATAGGATTAG
34948315 TAGCTTTAG
130 TAGCTTTAG
* * * *
34948324 TCTGCTCCACTGCAATTTTAGGGAGATAAGACTTGTTATGGTAGATTTGATCCGACCTACTGCAA
1 TCTGCTCCACTGCAACTTTAGAGAGATAAGACTTGTTATGGTAGATTTCATCCGACCTAATGCAA
* * *
34948389 CTTTAAAGGTACAGGATTCATCGTTTTAATCTGCTCCACTGCAACTTCAGGGAAATAGGATTAGT
66 CTTCAAAGGTACAGGATTCATCGTTTTAATCCGCTCCACTACAACTTCAGGGAAATAGGATTAGT
34948454 GGTTTCACTG
Statistics
Matches: 114, Mismatches: 15, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
138 113 0.99
139 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (138 bp):
TCTGCTCCACTGCAACTTTAGAGAGATAAGACTTGTTATGGTAGATTTCATCCGACCTAATGCAA
CTTCAAAGGTACAGGATTCATCGTTTTAATCCGCTCCACTACAACTTCAGGGAAATAGGATTAGT
AGCTTTAG
Found at i:34948449 original size:44 final size:44
Alignment explanation
Indices: 34948246--34948450 Score: 112
Period size: 44 Copynumber: 4.5 Consensus size: 44
34948236 TCTGACTTAA
* *
34948246 TGCAACTTCAGAGG-TATAGGATTCATCGTTTTAATCCGCTCCAT
1 TGCAACTTCAG-GGAGATAGGATTCATCGTTTTAATCCGCTCCAC
* * * * *
34948290 TACAACTTCAGGGAGATAGGATT-AGTAGCTTTAGTCTGCTCCAC
1 TGCAACTTCAGGGAGATAGGATTCA-TCGTTTTAATCCGCTCCAC
* * * * * * *
34948334 TGCAATTTTAGGGAGATAAGACTTGTTATGGTAGATTTGATCCGAC-CTAC
1 TGCAACTTCAGGGAGATAGGA--T-TCATCGT---TTTAATCCG-CTCCAC
* * * * *
34948384 TGCAACTTTAAAGG-TACAGGATTCATCGTTTTAATCTGCTCCAC
1 TGCAAC-TTCAGGGAGATAGGATTCATCGTTTTAATCCGCTCCAC
*
34948428 TGCAACTTCAGGGAAATAGGATT
1 TGCAACTTCAGGGAGATAGGATT
34948451 AGTGGTTTCA
Statistics
Matches: 116, Mismatches: 32, Indels: 26
0.67 0.18 0.15
Matches are distributed among these distances:
43 9 0.08
44 72 0.62
46 1 0.01
47 8 0.07
48 2 0.02
50 18 0.16
51 6 0.05
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (44 bp):
TGCAACTTCAGGGAGATAGGATTCATCGTTTTAATCCGCTCCAC
Found at i:34952989 original size:11 final size:11
Alignment explanation
Indices: 34952969--34952998 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
34952959 TGTTCTAAAT
34952969 ATTA-CTCTGA
1 ATTATCTCTGA
34952979 ATTATCTCTGA
1 ATTATCTCTGA
34952990 ATTATCTCT
1 ATTATCTCT
34952999 AAATAACACT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 4 0.21
11 15 0.79
ACGTcount: A:0.27, C:0.20, G:0.07, T:0.47
Consensus pattern (11 bp):
ATTATCTCTGA
Found at i:34956523 original size:19 final size:19
Alignment explanation
Indices: 34956499--34956539 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
34956489 TTTGAAACTT
*
34956499 TAATGCATATG-ATGAGATG
1 TAATGCAAATGAATGA-ATG
34956518 TAATGCAAATGAATGAATG
1 TAATGCAAATGAATGAATG
34956537 TAA
1 TAA
34956540 AAAGAGGCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.44, C:0.05, G:0.22, T:0.29
Consensus pattern (19 bp):
TAATGCAAATGAATGAATG
Found at i:34961556 original size:28 final size:29
Alignment explanation
Indices: 34961525--34961585 Score: 79
Period size: 28 Copynumber: 2.1 Consensus size: 29
34961515 GGTGCTGGGA
* *
34961525 CATTGGGCAGAGGTGTGCAGCG-CTGAGG
1 CATTGGGCAAAGGCGTGCAGCGCCTGAGG
* *
34961553 CATTGGGCAAAGGCGTGCGGCGCCTTAGG
1 CATTGGGCAAAGGCGTGCAGCGCCTGAGG
34961582 CATT
1 CATT
34961586 ACACCAAAAC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
28 19 0.68
29 9 0.32
ACGTcount: A:0.18, C:0.21, G:0.41, T:0.20
Consensus pattern (29 bp):
CATTGGGCAAAGGCGTGCAGCGCCTGAGG
Found at i:34961621 original size:22 final size:22
Alignment explanation
Indices: 34961596--34961638 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
34961586 ACACCAAAAC
*
34961596 AGGCTTTTAGCGGCGCTTTTTT
1 AGGCATTTAGCGGCGCTTTTTT
*
34961618 AGGCATTTAGCGGTGCTTTTT
1 AGGCATTTAGCGGCGCTTTTT
34961639 AGCGTCGCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.12, C:0.16, G:0.28, T:0.44
Consensus pattern (22 bp):
AGGCATTTAGCGGCGCTTTTTT
Found at i:34961735 original size:43 final size:43
Alignment explanation
Indices: 34961686--34961895 Score: 303
Period size: 43 Copynumber: 4.9 Consensus size: 43
34961676 CGAAAAAAGT
*
34961686 GCCGCTAAAGACCAGGACCTTTAACGGCGCTTTACCCACAAAC
1 GCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTACCCACAAAC
*
34961729 GCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTACCCATAAAC
1 GCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTACCCACAAAC
* *
34961772 GCCGCTAAAGACCAGAACCTTTAGTGGCGCTTTACCCACAAAC
1 GCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTACCCACAAAC
* ** * ** *
34961815 TCCGCTAAAGATTAGGACCTTTAGCGGTGCTTTTTCCATAAAC
1 GCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTACCCACAAAC
* *
34961858 GCCGCTAAAGACCAGGACCTTTAGCGGTGCTTTCCCCA
1 GCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTACCCA
34961896 AAAATTAAAA
Statistics
Matches: 148, Mismatches: 19, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 148 1.00
ACGTcount: A:0.27, C:0.31, G:0.20, T:0.21
Consensus pattern (43 bp):
GCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTACCCACAAAC
Found at i:34962528 original size:23 final size:23
Alignment explanation
Indices: 34962493--34962941 Score: 361
Period size: 23 Copynumber: 19.7 Consensus size: 23
34962483 CAAGTTAAAT
34962493 TTAAACACTTCAATTTGCAGCAC
1 TTAAACACTTCAATTTGCAGCAC
* **
34962516 TTTAACA-TCTCAATTTTTAGCAAC
1 TTAAACACT-TCAATTTGCAGC-AC
34962540 -TAAACACTTCAATTTGCAGCAC
1 TTAAACACTTCAATTTGCAGCAC
* *
34962562 TTAAACACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTGCAGCAC
*
34962585 TTAAACACTTAAATTTGCAGCAC
1 TTAAACACTTCAATTTGCAGCAC
** * *
34962608 TTAAACA-TATCAATTAACAACAT
1 TTAAACACT-TCAATTTGCAGCAC
* * *
34962631 TTATACACCTCAA-TTACAGCGA-
1 TTAAACACTTCAATTTGCAGC-AC
* *
34962653 TAAAACA-TCTCAATTTCCAGCAAC
1 TTAAACACT-TCAATTTGCAGC-AC
34962677 -TAAGA-ACTTCAATTTGCAGCAC
1 TTAA-ACACTTCAATTTGCAGCAC
34962699 TTAAACACTTCAATTTGCAGCAC
1 TTAAACACTTCAATTTGCAGCAC
* *
34962722 TTAAA-ACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTGCAGCAC
*
34962744 TTAAACACTTAAATTTGCAGCAC
1 TTAAACACTTCAATTTGCAGCAC
** * *
34962767 TTAAACA-TATCAATTAACAACAT
1 TTAAACACT-TCAATTTGCAGCAC
* * *
34962790 TTATACACCTCAA-TTACAGCGA-
1 TTAAACACTTCAATTTGCAGC-AC
* * * *
34962812 TAAAACA-TCTAAATTTCCAACAAC
1 TTAAACACT-TCAATTTGCAGC-AC
*
34962836 -TAAGCACTTCAATTTGCAGCAC
1 TTAAACACTTCAATTTGCAGCAC
* *
34962858 TTCAACACTTCAATTTGCAACAC
1 TTAAACACTTCAATTTGCAGCAC
* * *
34962881 TTAAACACTTCAATTTACAACAT
1 TTAAACACTTCAATTTGCAGCAC
*
34962904 TTAAACACTTAAATTTGCAGCAC
1 TTAAACACTTCAATTTGCAGCAC
34962927 TTAAACA-TATCAATT
1 TTAAACACT-TCAATT
34962942 AACAACATTC
Statistics
Matches: 338, Mismatches: 64, Indels: 48
0.75 0.14 0.11
Matches are distributed among these distances:
22 58 0.17
23 274 0.81
24 6 0.02
ACGTcount: A:0.40, C:0.23, G:0.06, T:0.31
Consensus pattern (23 bp):
TTAAACACTTCAATTTGCAGCAC
Found at i:34962712 original size:68 final size:69
Alignment explanation
Indices: 34962493--34962941 Score: 298
Period size: 68 Copynumber: 6.6 Consensus size: 69
34962483 CAAGTTAAAT
* ** **
34962493 TTAAACACTTCAATTTGCAGCACTTTAACATCTCAATTTTTAGCAACTAAACACTTCAATTTGCA
1 TTAAACACTTCAATTTACAGCACTAAAACATCTCAATTTACAGCAACTAAACACTTCAATTTGCA
34962558 GCAC
66 GCAC
* * * * *
34962562 TTAAACACTTCAATTTACAGCATTTAAACA-CTTAAATTTGCAGC-ACTTAAACA-TATCAATTA
1 TTAAACACTTCAATTTACAGCACTAAAACATC-TCAATTTACAGCAAC-TAAACACT-TCAATTT
* * *
34962624 ACAACAT
63 GCAGCAC
* * *
34962631 TTATACACCTCAA-TTACAGCGA-TAAAACATCTCAATTTCCAGCAACTAAGA-ACTTCAATTTG
1 TTAAACACTTCAATTTACAGC-ACTAAAACATCTCAATTTACAGCAACTAA-ACACTTCAATTTG
34962693 CAGCAC
64 CAGCAC
* ** *
34962699 TTAAACACTTCAATTTGCAGCACTTAAAAC-T-TCAATTTACAGCATTTAAACACTTAAATTTGC
1 TTAAACACTTCAATTTACAGCAC-TAAAACATCTCAATTTACAGCAACTAAACACTTCAATTTGC
34962762 AGCAC
65 AGCAC
* * * * * * * *
34962767 TTAAACA-TATCAATTAACAACATTTATACACCTCAA-TTACAGCGA-TAAA-ACATCTAAATTT
1 TTAAACACT-TCAATTTACAGCACTAAAACATCTCAATTTACAGCAACTAAACAC-T-TCAATTT
* *
34962828 CCAACAAC
63 GCAGC-AC
* * ** * * *
34962836 -TAAGCACTTCAATTTGCAGCACTTCAACA-CTTCAATTTGCAAC-ACTTAAACACTTCAATTTA
1 TTAAACACTTCAATTTACAGCACTAAAACATC-TCAATTTACAGCAAC-TAAACACTTCAATTTG
* *
34962898 CAACAT
64 CAGCAC
* * * *
34962904 TTAAACACTTAAATTTGCAGCACTTAAACATATCAATT
1 TTAAACACTTCAATTTACAGCACTAAAACATCTCAATT
34962942 AACAACATTC
Statistics
Matches: 301, Mismatches: 53, Indels: 52
0.74 0.13 0.13
Matches are distributed among these distances:
66 2 0.01
67 12 0.04
68 144 0.48
69 130 0.43
70 11 0.04
71 2 0.01
ACGTcount: A:0.40, C:0.23, G:0.06, T:0.31
Consensus pattern (69 bp):
TTAAACACTTCAATTTACAGCACTAAAACATCTCAATTTACAGCAACTAAACACTTCAATTTGCA
GCAC
Found at i:34962762 original size:159 final size:160
Alignment explanation
Indices: 34962540--34962950 Score: 761
Period size: 159 Copynumber: 2.6 Consensus size: 160
34962530 TTTTAGCAAC
34962540 TAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTACAGCATTTAAACACTTAAATTTGCAG
1 TAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTACAGCATTTAAACACTTAAATTTGCAG
*
34962605 CACTTAAACATATCAATTAACAACATTTATACACCTCAATTACAGCGATAAAACATCTCAATTTC
66 CACTTAAACATATCAATTAACAACATTTATACACCTCAATTACAGCGATAAAACATCTAAATTTC
*
34962670 CAGCAACTAAGAACTTCAATTTGCAGCACT
131 CAACAACTAAGAACTTCAATTTGCAGCACT
34962700 TAAACACTTCAATTTGCAGCACTTAAA-ACTTCAATTTACAGCATTTAAACACTTAAATTTGCAG
1 TAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTACAGCATTTAAACACTTAAATTTGCAG
34962764 CACTTAAACATATCAATTAACAACATTTATACACCTCAATTACAGCGATAAAACATCTAAATTTC
66 CACTTAAACATATCAATTAACAACATTTATACACCTCAATTACAGCGATAAAACATCTAAATTTC
*
34962829 CAACAACTAAGCACTTCAATTTGCAGCACT
131 CAACAACTAAGAACTTCAATTTGCAGCACT
* * *
34962859 TCAACACTTCAATTTGCAACACTTAAACACTTCAATTTACAACATTTAAACACTTAAATTTGCAG
1 TAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTACAGCATTTAAACACTTAAATTTGCAG
34962924 CACTTAAACATATCAATTAACAACATT
66 CACTTAAACATATCAATTAACAACATT
34962951 CGATCCTGCT
Statistics
Matches: 244, Mismatches: 6, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
159 154 0.63
160 90 0.37
ACGTcount: A:0.41, C:0.23, G:0.06, T:0.30
Consensus pattern (160 bp):
TAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTACAGCATTTAAACACTTAAATTTGCAG
CACTTAAACATATCAATTAACAACATTTATACACCTCAATTACAGCGATAAAACATCTAAATTTC
CAACAACTAAGAACTTCAATTTGCAGCACT
Found at i:34964995 original size:17 final size:17
Alignment explanation
Indices: 34964956--34964988 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
34964946 CTCCTCCTCC
34964956 GATTTCTTCTCATCTAA
1 GATTTCTTCTCATCTAA
34964973 GATTTCTTCTCATCTA
1 GATTTCTTCTCATCTA
34964989 GGGTTTCAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.21, C:0.24, G:0.06, T:0.48
Consensus pattern (17 bp):
GATTTCTTCTCATCTAA
Found at i:34966105 original size:14 final size:15
Alignment explanation
Indices: 34966079--34966107 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
34966069 ATAAACCCCT
34966079 AACCCCTAACCCTTA
1 AACCCCTAACCCTTA
34966094 AACCCC-AACCCTTA
1 AACCCCTAACCCTTA
34966108 TAACTGTCCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.34, C:0.48, G:0.00, T:0.17
Consensus pattern (15 bp):
AACCCCTAACCCTTA
Found at i:34967279 original size:41 final size:41
Alignment explanation
Indices: 34967056--34967420 Score: 461
Period size: 41 Copynumber: 8.9 Consensus size: 41
34967046 TATGATAAAT
* **
34967056 CTGAGCATTAGCGGCGCTTTTTCAAAAAACGCCGCTAAATCC
1 CTGAGCATTAGCGGCGCTTCTTC-AAAAACGCCGCTAAAGAC
* * *
34967098 CTAAGCATTAGCGGCGCTTTTTCAAAAAACGCCGCTAAAGCC
1 CTGAGCATTAGCGGCGCTTCTTC-AAAAACGCCGCTAAAGAC
*
34967140 CTGAGCATTAGCGGCGCTTCTTCATAAACGCCGCTAAAGA-
1 CTGAGCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGAC
*
34967180 -TAGAGCATTAGCGGCGCTTCTTCATAAACGCCGCTAAAGA-
1 CT-GAGCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGAC
* *
34967220 -TAGAGCATTAGCGGCGCTTCTTTAAAAACGCCGCTAAAGAA
1 CT-GAGCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGAC
* *
34967261 CTGAGCATTAGCGGCGCTTCTTCAGAAACGTCGCTAAA-AC
1 CTGAGCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGAC
* * *
34967301 CTTGAGCATCAGCGGCGCTTTTTCAAAAACGCCGCTAAAGCC
1 C-TGAGCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGAC
* * *
34967343 CTTAGCATTAGTGGCGCTTCTTCAAAAATGCCGCTAAAGAC
1 CTGAGCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGAC
* * *
34967384 CTGAGCTTTAGCGGCACTTCTTCAAAAACGCCACTAA
1 CTGAGCATTAGCGGCGCTTCTTCAAAAACGCCGCTAA
34967421 TGCCCCCAAA
Statistics
Matches: 289, Mismatches: 29, Indels: 11
0.88 0.09 0.03
Matches are distributed among these distances:
39 1 0.00
40 78 0.27
41 146 0.51
42 64 0.22
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (41 bp):
CTGAGCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGAC
Found at i:34967554 original size:40 final size:40
Alignment explanation
Indices: 34967481--34967598 Score: 145
Period size: 40 Copynumber: 3.0 Consensus size: 40
34967471 CGCTTTGTGG
*
34967481 AAAA-CGCCGCTAATGCTC-ATTTTTAGTGACGTTTTTTA
1 AAAAGCGCCGCTAATGCTCTATTTTTAGTGGCGTTTTTTA
* *
34967519 AAAAGCGCCGCTAATACTCTATCTTTAGTGGCGTTTTATT-
1 AAAAGCGCCGCTAATGCTCTATTTTTAGTGGCGTTTT-TTA
* *
34967559 AGAAGCGCCGCTAATGCT-TGATTTTTAGCGGCGTTTTTTA
1 AAAAGCGCCGCTAATGCTCT-ATTTTTAGTGGCGTTTTTTA
34967599 TCCAAACGCC
Statistics
Matches: 68, Mismatches: 7, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
38 4 0.06
39 16 0.24
40 46 0.68
41 2 0.03
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (40 bp):
AAAAGCGCCGCTAATGCTCTATTTTTAGTGGCGTTTTTTA
Found at i:34967714 original size:18 final size:18
Alignment explanation
Indices: 34967668--34967722 Score: 56
Period size: 18 Copynumber: 3.0 Consensus size: 18
34967658 TGTGGGCTGC
*
34967668 TATTGGTTTGGGCTGGGGT
1 TATT-GTTTGGGCTAGGGT
** *
34967687 TATTAATTGGGCTCGGGT
1 TATTGTTTGGGCTAGGGT
*
34967705 TGTTGTTTGGGCTAGGGT
1 TATTGTTTGGGCTAGGGT
34967723 AACAATTAGG
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
18 25 0.86
19 4 0.14
ACGTcount: A:0.09, C:0.07, G:0.42, T:0.42
Consensus pattern (18 bp):
TATTGTTTGGGCTAGGGT
Found at i:34968902 original size:19 final size:18
Alignment explanation
Indices: 34968852--34968959 Score: 62
Period size: 19 Copynumber: 5.7 Consensus size: 18
34968842 GTTTTATTGA
*
34968852 TTTTATAAATATTT-TAAA
1 TTTTAT-AATATTTATAAT
34968870 TTTTATTAGA-ATTTATTAAT
1 TTTTA-TA-ATATTTA-TAAT
34968890 TTTTATAATATTTATAAGT
1 TTTTATAATATTTATAA-T
* *
34968909 TTATATGAAT-TTTAAAAT
1 TTTTAT-AATATTTATAAT
* *
34968927 ATATTTTTAATATTTAAGAAT
1 -T-TTTATAATATTT-ATAAT
34968948 TTTTAT-ATATTT
1 TTTTATAATATTT
34968960 TATTTTTTTC
Statistics
Matches: 72, Mismatches: 7, Indels: 22
0.71 0.07 0.22
Matches are distributed among these distances:
18 21 0.29
19 29 0.40
20 18 0.25
21 4 0.06
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (18 bp):
TTTTATAATATTTATAAT
Found at i:34968912 original size:37 final size:37
Alignment explanation
Indices: 34968844--34968920 Score: 88
Period size: 37 Copynumber: 2.1 Consensus size: 37
34968834 TTAAACATGT
* *
34968844 TTTATTGATTTTATAAATATTTTAAATTTTAT-TAGAA
1 TTTATTAATTTTATAAATATTTTAAAGTTTATAT-GAA
34968881 TTTATTAATTTT-TATAATA-TTTATAAGTTTATATGAA
1 TTTATTAATTTTATA-AATATTTTA-AAGTTTATATGAA
34968918 TTT
1 TTT
34968921 TAAAATATAT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
36 6 0.17
37 28 0.80
38 1 0.03
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.58
Consensus pattern (37 bp):
TTTATTAATTTTATAAATATTTTAAAGTTTATATGAA
Found at i:34968919 original size:29 final size:28
Alignment explanation
Indices: 34968887--34968959 Score: 69
Period size: 29 Copynumber: 2.6 Consensus size: 28
34968877 AGAATTTATT
*
34968887 AATTTTTATAATATTTATAAGT-TTATATG
1 AATTTTTATAATATTTATAA-TATT-TAAG
* * *
34968916 AATTTTAAAATATATTTTTAATATTTAAG
1 AATTTTTATA-ATATTTATAATATTTAAG
34968945 AATTTTTAT-ATATTT
1 AATTTTTATAATATTT
34968960 TATTTTTTTC
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
27 6 0.17
29 19 0.53
30 11 0.31
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (28 bp):
AATTTTTATAATATTTATAATATTTAAG
Found at i:34968973 original size:19 final size:18
Alignment explanation
Indices: 34968947--34968984 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
34968937 TATTTAAGAA
34968947 TTTTTATAT-ATTTTATTT
1 TTTTTATATAATTTT-TTT
34968965 TTTTCTATATAATTTTTTT
1 TTTT-TATATAATTTTTTT
34968984 T
1 T
34968985 CTTATTTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.22
19 9 0.50
20 5 0.28
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (18 bp):
TTTTTATATAATTTTTTT
Found at i:34969798 original size:20 final size:20
Alignment explanation
Indices: 34969760--34969797 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
34969750 TTTTTTTTAA
34969760 TATATTTCCTCATAATTTTC
1 TATATTTCCTCATAATTTTC
34969780 TATATTTCCTCAT-ATTTT
1 TATATTTCCTCATAATTTT
34969798 TTTTATACTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.24, C:0.18, G:0.00, T:0.58
Consensus pattern (20 bp):
TATATTTCCTCATAATTTTC
Found at i:34970435 original size:23 final size:23
Alignment explanation
Indices: 34970409--34970458 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
34970399 AAATTTAATC
*
34970409 ATAAATATTTT-ATAGTATAAAAT
1 ATAAATATTTTAATAATAT-AAAT
34970432 ATAAATATTTTAATAATATAAAT
1 ATAAATATTTTAATAATATAAAT
34970455 ATAA
1 ATAA
34970459 GTGTTTGTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 19 0.76
24 6 0.24
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (23 bp):
ATAAATATTTTAATAATATAAAT
Found at i:34973099 original size:595 final size:597
Alignment explanation
Indices: 34972237--34973431 Score: 2245
Period size: 597 Copynumber: 2.0 Consensus size: 597
34972227 TAAAGAAAAG
34972237 AAAATGCATAATATATACATTAGAATTATGAAGAATAAGAGGCATGCGTATGAATTTACATATAA
1 AAAATGCATAATATATACATTAGAATTATGAAGAATAAGAGGCATGCGTATGAATTTACATATAA
34972302 AAATTTGGATTATAAAATTATATAACAAAATATATATTTATGAAAATAATAAAAAATATATATAA
66 AAATTTGGATTATAAAATTATATAACAAAATATATATTTATGAAAATAATAAAAAATATATATAA
*
34972367 ATTATAAAGTATGTGTAAAAACATATATTAGAGCATTAATAAATATAGACATATATATATATAAA
131 ATTATAAAGTATGTGTAAAAACATATATTAGAGCATTAATAAATATAGACATATATATACATAAA
34972432 AATATTTGTTTTGAAAAATTTAATATGTACACATACATATATACAAAAAAATATATACATATAGA
196 AATATTTGTTTTGAAAAATTTAATATGTACACATACATATATACAAAAAAATATATACATATAGA
*
34972497 TTTTTTTTAAATAATTACATACGAAG-AAAAAAATTAATAATTACACAATTGAAATTAATTAATT
261 TTTTTTTTAAATAATTACATACGAAGAAAAAAAATTAATAATTACACAATTGAAATTAAATAATT
*
34972561 TTAATAAAAAT-AAAAAAGACTAAATTGAACTGCAAATAAAAATTCAGGGGACAAATTCGTAAAT
326 TTAATAAAAATAAAAAAAGACTAAATTGAACTGCAAATAAAAATCCAGGGGACAAATTCGTAAAT
34972625 AAGTGAAGTCACATGGACTAAATTGAGCGTGCGAATTACATAGAGGGACTGGAAGGGAAATTTTC
391 AAGTGAAGTCACATGGACTAAATTGAGCGTGCGAATTACATAGAGGGACTGGAAGGGAAATTTTC
34972690 TCTTCTCCTCTAAAACGGCGTCGTTGCT-AGTTGGACCAAATTGAAATTGAAAACAAATTAAAGG
456 TCTTCTCCTCTAAAACGGCGTCGTTG-TAAGTTGGACCAAATTGAAATTGAAAACAAATTAAAGG
*
34972754 AGCGAATTTTCAAAAAAACCCAATTATAAGAACATTAAAAGGCAGAGGGGCTAAAGTGCAATTTA
520 AGCAAATTTTCAAAAAAACCCAATTATAAGAACATTAAAAGGCAGAGGGGCTAAAGTGCAATTTA
34972819 CCCTTCCGCTCGA
585 CCCTTCCGCTCGA
*
34972832 AAAATGCATAATATATACATTGGAATTATGAAGAATAAGAGGCATGCGTATGAATTTACATATAA
1 AAAATGCATAATATATACATTAGAATTATGAAGAATAAGAGGCATGCGTATGAATTTACATATAA
*
34972897 AACTTTGGATTATAAAATTATATAACAAAATATATATTTATGAAAATAATAAAAAATATATATAA
66 AAATTTGGATTATAAAATTATATAACAAAATATATATTTATGAAAATAATAAAAAATATATATAA
34972962 ATTATAAAGTATGTGTAAAAACATATATTAGAGCATTAATAAATATAGACATATATATACATAAA
131 ATTATAAAGTATGTGTAAAAACATATATTAGAGCATTAATAAATATAGACATATATATACAT-AA
*
34973027 AAATATTTGTTTTGAAAATTTTAATATGTACACATACATATATACAAAAAAATATATACATATAG
195 AAATATTTGTTTTGAAAAATTTAATATGTACACATACATATATACAAAAAAATATATACATATAG
34973092 A-TTTTTTTAAATAATTACATACGAAGAAAAAAAATTAATAATTACACAATTGAAATTAAATAAT
260 ATTTTTTTTAAATAATTACATACGAAGAAAAAAAATTAATAATTACACAATTGAAATTAAATAAT
*
34973156 TTTAATAAAAATAAAAAAAGACTAAATTGAACTGCAAATAAAAATCCGGGGGACAAATTCGTAAA
325 TTTAATAAAAATAAAAAAAGACTAAATTGAACTGCAAATAAAAATCCAGGGGACAAATTCGTAAA
34973221 TAAGTGAAGTCACATGGACTAAATTGAGCGTGCGAATTACATAGAGGGACTGGAAGGGAAATTTT
390 TAAGTGAAGTCACATGGACTAAATTGAGCGTGCGAATTACATAGAGGGACTGGAAGGGAAATTTT
34973286 CTCTTCTCCTCTAAAACGGCGTCGTTGTAAGTTGGACCAAATTGAAATTGAAAACAAATTAAAGG
455 CTCTTCTCCTCTAAAACGGCGTCGTTGTAAGTTGGACCAAATTGAAATTGAAAACAAATTAAAGG
* * *
34973351 GGCAAATTTTCAAAAAAACCCAATTGTAAGAACATTAAAAGGTAGAGGGGCTAAAGTGCAATTTA
520 AGCAAATTTTCAAAAAAACCCAATTATAAGAACATTAAAAGGCAGAGGGGCTAAAGTGCAATTTA
34973416 CCCTTCCGCTCGA
585 CCCTTCCGCTCGA
34973429 AAA
1 AAA
34973432 CAAGCGGAGC
Statistics
Matches: 585, Mismatches: 11, Indels: 6
0.97 0.02 0.01
Matches are distributed among these distances:
595 214 0.37
596 116 0.20
597 255 0.44
ACGTcount: A:0.47, C:0.10, G:0.13, T:0.29
Consensus pattern (597 bp):
AAAATGCATAATATATACATTAGAATTATGAAGAATAAGAGGCATGCGTATGAATTTACATATAA
AAATTTGGATTATAAAATTATATAACAAAATATATATTTATGAAAATAATAAAAAATATATATAA
ATTATAAAGTATGTGTAAAAACATATATTAGAGCATTAATAAATATAGACATATATATACATAAA
AATATTTGTTTTGAAAAATTTAATATGTACACATACATATATACAAAAAAATATATACATATAGA
TTTTTTTTAAATAATTACATACGAAGAAAAAAAATTAATAATTACACAATTGAAATTAAATAATT
TTAATAAAAATAAAAAAAGACTAAATTGAACTGCAAATAAAAATCCAGGGGACAAATTCGTAAAT
AAGTGAAGTCACATGGACTAAATTGAGCGTGCGAATTACATAGAGGGACTGGAAGGGAAATTTTC
TCTTCTCCTCTAAAACGGCGTCGTTGTAAGTTGGACCAAATTGAAATTGAAAACAAATTAAAGGA
GCAAATTTTCAAAAAAACCCAATTATAAGAACATTAAAAGGCAGAGGGGCTAAAGTGCAATTTAC
CCTTCCGCTCGA
Found at i:34973903 original size:4 final size:4
Alignment explanation
Indices: 34973894--34973924 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
34973884 TTTATTTCAG
*
34973894 TAAA TAAA TAAG TAAA TAAA TAAA TAAA TAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAA
34973925 CATATAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (4 bp):
TAAA
Done.