Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67659327
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 461372 characters in sequence are not A, C, G, or T
File 111 of 216
Found at i:35300802 original size:12 final size:12
Alignment explanation
Indices: 35300785--35300810 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
35300775 ACATTTCTAA
35300785 ATTATGGCATGT
1 ATTATGGCATGT
35300797 ATTATGGCATGT
1 ATTATGGCATGT
35300809 AT
1 AT
35300811 AGATGACTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.27, C:0.08, G:0.23, T:0.42
Consensus pattern (12 bp):
ATTATGGCATGT
Found at i:35302226 original size:30 final size:30
Alignment explanation
Indices: 35302192--35302262 Score: 97
Period size: 30 Copynumber: 2.4 Consensus size: 30
35302182 TTAGTGAGTT
*
35302192 ACACGGCCTAAAGACATGGTCGTATAAAAC
1 ACACGGCCTAAAGACATGGCCGTATAAAAC
* * **
35302222 ACACGACCTAAAGACATGGCCGTCTATGAC
1 ACACGGCCTAAAGACATGGCCGTATAAAAC
35302252 ACACGGCCTAA
1 ACACGGCCTAA
35302263 CACATGGGCG
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.37, C:0.28, G:0.20, T:0.15
Consensus pattern (30 bp):
ACACGGCCTAAAGACATGGCCGTATAAAAC
Found at i:35305226 original size:58 final size:58
Alignment explanation
Indices: 35305126--35305237 Score: 190
Period size: 58 Copynumber: 1.9 Consensus size: 58
35305116 GTTTATATGT
35305126 TTATACGATAAATTCCCTGAATTATTTTTGTGTTTAAATAATTTTCTCACACCTGCCA
1 TTATACGATAAATTCCCTGAATTATTTTTGTGTTTAAATAATTTTCTCACACCTGCCA
* *
35305184 TTATA-GATAAATTCCCTGAATTGTTCTTTGTGTTTAAGTAATTTTCTCACACCT
1 TTATACGATAAATTCCCTGAATTATT-TTTGTGTTTAAATAATTTTCTCACACCT
35305238 ACTATTAGAG
Statistics
Matches: 51, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
57 19 0.37
58 32 0.63
ACGTcount: A:0.28, C:0.18, G:0.10, T:0.45
Consensus pattern (58 bp):
TTATACGATAAATTCCCTGAATTATTTTTGTGTTTAAATAATTTTCTCACACCTGCCA
Found at i:35305253 original size:58 final size:57
Alignment explanation
Indices: 35305132--35305254 Score: 183
Period size: 58 Copynumber: 2.1 Consensus size: 57
35305122 ATGTTTATAC
* *
35305132 GATAAATTCCCTGAATTATTTTTGTGTTTAAATAATTTTCTCACACCTGCCATTATA
1 GATAAATTCCCTGAATTATTTTTGTGTTTAAATAATTTTCTCACACCTACCATTAGA
* * *
35305189 GATAAATTCCCTGAATTGTTCTTTGTGTTTAAGTAATTTTCTCACACCTACTATTAGA
1 GATAAATTCCCTGAATTATT-TTTGTGTTTAAATAATTTTCTCACACCTACCATTAGA
*
35305247 GTTAAATT
1 GATAAATT
35305255 TATTATCTAG
Statistics
Matches: 59, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
57 19 0.32
58 40 0.68
ACGTcount: A:0.29, C:0.16, G:0.11, T:0.44
Consensus pattern (57 bp):
GATAAATTCCCTGAATTATTTTTGTGTTTAAATAATTTTCTCACACCTACCATTAGA
Found at i:35311140 original size:57 final size:58
Alignment explanation
Indices: 35311048--35311170 Score: 180
Period size: 57 Copynumber: 2.2 Consensus size: 58
35311038 GGTGAATATA
*
35311048 GAGAAATGAGAAATATTTGGAAATGATTATAGTTTTCTCAAAAATGAAAATGAAAATG
1 GAGAAATGAGAAATATTTGGAAATGAATATAGTTTTCTCAAAAATGAAAATGAAAATG
* *
35311106 GAGAAATG-G-AATCATTTGGAAATGAATATGGTTTTCTCCAAAATGAAAATGAAAAT-
1 GAGAAATGAGAAAT-ATTTGGAAATGAATATAGTTTTCTCAAAAATGAAAATGAAAATG
*
35311162 GAAAAATGA
1 GAGAAATGA
35311171 CCTAGAAATG
Statistics
Matches: 59, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
56 10 0.17
57 41 0.69
58 8 0.14
ACGTcount: A:0.48, C:0.05, G:0.20, T:0.28
Consensus pattern (58 bp):
GAGAAATGAGAAATATTTGGAAATGAATATAGTTTTCTCAAAAATGAAAATGAAAATG
Found at i:35314114 original size:42 final size:43
Alignment explanation
Indices: 35314056--35314141 Score: 122
Period size: 42 Copynumber: 2.0 Consensus size: 43
35314046 ATTTCCAGGT
* *
35314056 CATTTTTATTTCGGAGAAAA-CA-AATTCATTTTTAAATGTTTC
1 CATTTTCATTTCGGAGAAAACCATAATT-ATTTTCAAATGTTTC
*
35314098 CATTTTCATTTTGGAGAAAACCATAATTATTTTCAAATGTTTC
1 CATTTTCATTTCGGAGAAAACCATAATTATTTTCAAATGTTTC
35314141 C
1 C
35314142 CGTTCTCTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
42 18 0.46
43 17 0.44
44 4 0.10
ACGTcount: A:0.33, C:0.14, G:0.09, T:0.44
Consensus pattern (43 bp):
CATTTTCATTTCGGAGAAAACCATAATTATTTTCAAATGTTTC
Found at i:35324101 original size:23 final size:23
Alignment explanation
Indices: 35324075--35324147 Score: 62
Period size: 23 Copynumber: 3.2 Consensus size: 23
35324065 TTAAGTAATA
35324075 ATTCTATTTTAATTTAATAAACT
1 ATTCTATTTTAATTTAATAAACT
* * * *
35324098 ATTCTCA--TCAAATTACTTAA-T
1 ATTCT-ATTTTAATTTAATAAACT
*
35324119 AACTCTATTTTAATTTAATAAACT
1 -ATTCTATTTTAATTTAATAAACT
35324143 ATTCT
1 ATTCT
35324148 CATCAAATTA
Statistics
Matches: 35, Mismatches: 10, Indels: 10
0.64 0.18 0.18
Matches are distributed among these distances:
21 2 0.06
22 13 0.37
23 18 0.51
24 2 0.06
ACGTcount: A:0.38, C:0.14, G:0.00, T:0.48
Consensus pattern (23 bp):
ATTCTATTTTAATTTAATAAACT
Found at i:35324119 original size:45 final size:45
Alignment explanation
Indices: 35324070--35324158 Score: 169
Period size: 45 Copynumber: 2.0 Consensus size: 45
35324060 TCTAATTAAG
*
35324070 TAATAATTCTATTTTAATTTAATAAACTATTCTCATCAAATTACT
1 TAATAACTCTATTTTAATTTAATAAACTATTCTCATCAAATTACT
35324115 TAATAACTCTATTTTAATTTAATAAACTATTCTCATCAAATTAC
1 TAATAACTCTATTTTAATTTAATAAACTATTCTCATCAAATTAC
35324159 CAAAATAGAA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.40, C:0.15, G:0.00, T:0.45
Consensus pattern (45 bp):
TAATAACTCTATTTTAATTTAATAAACTATTCTCATCAAATTACT
Found at i:35324156 original size:23 final size:23
Alignment explanation
Indices: 35324085--35324156 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 23
35324075 ATTCTATTTT
35324085 AATTTAATAAACTATTCTCATCA
1 AATTTAATAAACTATTCTCATCA
*
35324108 AATTACTTAATAACTCTATT-T--T--
1 AA-T--TTAATAA-ACTATTCTCATCA
35324130 AATTTAATAAACTATTCTCATCA
1 AATTTAATAAACTATTCTCATCA
35324153 AATT
1 AATT
35324157 ACCAAAATAG
Statistics
Matches: 38, Mismatches: 2, Indels: 18
0.66 0.03 0.31
Matches are distributed among these distances:
18 5 0.13
19 8 0.21
21 2 0.05
22 2 0.05
23 6 0.16
24 2 0.05
26 8 0.21
27 5 0.13
ACGTcount: A:0.42, C:0.15, G:0.00, T:0.43
Consensus pattern (23 bp):
AATTTAATAAACTATTCTCATCA
Found at i:35324187 original size:15 final size:15
Alignment explanation
Indices: 35324164--35324213 Score: 55
Period size: 15 Copynumber: 3.1 Consensus size: 15
35324154 ATTACCAAAA
35324164 TAGAATTTATTAAAT
1 TAGAATTTATTAAAT
*
35324179 TAGACTTTATTAAAT
1 TAGAATTTATTAAAT
*
35324194 GAGAATAGTTTATTAAAT
1 TAG-A-A-TTTATTAAAT
35324212 TA
1 TA
35324214 AAATAGAGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
15 16 0.57
16 1 0.04
18 11 0.39
ACGTcount: A:0.44, C:0.02, G:0.10, T:0.44
Consensus pattern (15 bp):
TAGAATTTATTAAAT
Found at i:35324218 original size:18 final size:18
Alignment explanation
Indices: 35324184--35324219 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
35324174 TAAATTAGAC
*
35324184 TTTATTAAATGAGAATAG
1 TTTATTAAATGAAAATAG
*
35324202 TTTATTAAATTAAAATAG
1 TTTATTAAATGAAAATAG
35324220 AGTTATTACT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.11, T:0.42
Consensus pattern (18 bp):
TTTATTAAATGAAAATAG
Found at i:35324495 original size:17 final size:18
Alignment explanation
Indices: 35324473--35324508 Score: 56
Period size: 17 Copynumber: 2.0 Consensus size: 18
35324463 GGTGCCGCCA
35324473 CAGGTTTTT-TTTTTTTG
1 CAGGTTTTTGTTTTTTTG
35324490 CAGGTTTTTGGTTTTTTTG
1 CAGGTTTTT-GTTTTTTTG
35324509 GTATATTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 9 0.53
19 8 0.47
ACGTcount: A:0.06, C:0.06, G:0.22, T:0.67
Consensus pattern (18 bp):
CAGGTTTTTGTTTTTTTG
Found at i:35324542 original size:27 final size:27
Alignment explanation
Indices: 35324511--35324571 Score: 104
Period size: 27 Copynumber: 2.3 Consensus size: 27
35324501 TTTTTTTGGT
* *
35324511 ATATTTTGGTAAATAAAAAAATTTATG
1 ATATTTTGGTAAATAAAAAAAGTTATA
35324538 ATATTTTGGTAAATAAAAAAAGTTATA
1 ATATTTTGGTAAATAAAAAAAGTTATA
35324565 ATATTTT
1 ATATTTT
35324572 AGTTATTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.43
Consensus pattern (27 bp):
ATATTTTGGTAAATAAAAAAAGTTATA
Found at i:35328855 original size:29 final size:31
Alignment explanation
Indices: 35328818--35328876 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 31
35328808 AGTGGCACAC
*
35328818 ATAAAGGTCAAACCTTTA-AAAA-TGCTCAT
1 ATAAAGGTCAAACATTTACAAAAGTGCTCAT
* *
35328847 ATAAGGGTCTAACATTTACAAAAGTGCTCA
1 ATAAAGGTCAAACATTTACAAAAGTGCTCA
35328877 AATGAAAGCT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 15 0.60
30 4 0.16
31 6 0.24
ACGTcount: A:0.42, C:0.17, G:0.14, T:0.27
Consensus pattern (31 bp):
ATAAAGGTCAAACATTTACAAAAGTGCTCAT
Found at i:35328937 original size:31 final size:30
Alignment explanation
Indices: 35328867--35328945 Score: 90
Period size: 31 Copynumber: 2.6 Consensus size: 30
35328857 AACATTTACA
*
35328867 AAAGTGCTCAAATGAA-AG-CTAAACCTTTC
1 AAAGTGCTCAAAT-AAGAGCCAAAACCTTTC
* * *
35328896 AAAGAGCTCAAATAAGAGCCAAAACTTTTTG
1 AAAGTGCTCAAATAAGAGCCAAAAC-CTTTC
35328927 AAAGTGCTCAAATAAGAGC
1 AAAGTGCTCAAATAAGAGC
35328946 TTCTCAAATG
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
28 2 0.05
29 14 0.33
30 5 0.12
31 21 0.50
ACGTcount: A:0.44, C:0.18, G:0.16, T:0.22
Consensus pattern (30 bp):
AAAGTGCTCAAATAAGAGCCAAAACCTTTC
Found at i:35329057 original size:19 final size:19
Alignment explanation
Indices: 35329033--35329075 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
35329023 ACTTTATTCT
*
35329033 AAATACGTTAGAATTCATC
1 AAATACGTTAGAATTCACC
35329052 AAATACGTTAGAATTCACC
1 AAATACGTTAGAATTCACC
35329071 AAATA
1 AAATA
35329076 TTTATAAAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.47, C:0.16, G:0.09, T:0.28
Consensus pattern (19 bp):
AAATACGTTAGAATTCACC
Found at i:35334377 original size:23 final size:22
Alignment explanation
Indices: 35334343--35334386 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
35334333 ATGGGTCATT
35334343 TTTCTTTGTGATAAATGATTGAA
1 TTTCTTTGTGAT-AATGATTGAA
*
35334366 TTTCTATT-TGATAGTGATTGA
1 TTTCT-TTGTGATAATGATTGA
35334387 CTTTTCATGA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 8 0.42
23 9 0.47
24 2 0.11
ACGTcount: A:0.27, C:0.05, G:0.18, T:0.50
Consensus pattern (22 bp):
TTTCTTTGTGATAATGATTGAA
Found at i:35343356 original size:16 final size:16
Alignment explanation
Indices: 35343335--35343367 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
35343325 GCCTTATGTT
35343335 CATCTTTTTCCCAATG
1 CATCTTTTTCCCAATG
35343351 CATCTTTTTCCCAATG
1 CATCTTTTTCCCAATG
35343367 C
1 C
35343368 CAAAGCAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.18, C:0.33, G:0.06, T:0.42
Consensus pattern (16 bp):
CATCTTTTTCCCAATG
Found at i:35351422 original size:45 final size:45
Alignment explanation
Indices: 35351365--35351489 Score: 187
Period size: 45 Copynumber: 2.8 Consensus size: 45
35351355 CATATGATCT
* * *
35351365 CATAGCATCTTTCAGCTATGGTCTTACTCATTTTTATAATGATGC
1 CATAACATCTTTCAGCTATGGTCTTACTCATTTTAATAATGATAC
* * * *
35351410 CATATCATCTTTCAACTATGGTCATACTCATTTTAATTATGATAC
1 CATAACATCTTTCAGCTATGGTCTTACTCATTTTAATAATGATAC
35351455 CATAACATCTTTCAGCTATGGTCTTACTCATTTTA
1 CATAACATCTTTCAGCTATGGTCTTACTCATTTTA
35351490 GGAATATAAC
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 71 1.00
ACGTcount: A:0.27, C:0.21, G:0.10, T:0.42
Consensus pattern (45 bp):
CATAACATCTTTCAGCTATGGTCTTACTCATTTTAATAATGATAC
Found at i:35351435 original size:22 final size:22
Alignment explanation
Indices: 35351410--35351477 Score: 59
Period size: 22 Copynumber: 3.0 Consensus size: 22
35351400 ATAATGATGC
35351410 CATATCATCTTTCAACTATGGT
1 CATATCATCTTTCAACTATGGT
* *
35351432 CATACTCAT-TTT-AATTATGAT
1 CATA-TCATCTTTCAACTATGGT
* *
35351453 ACCATAACATCTTTCAGCTATGGT
1 --CATATCATCTTTCAACTATGGT
35351477 C
1 C
35351478 TTACTCATTT
Statistics
Matches: 35, Mismatches: 6, Indels: 10
0.69 0.12 0.20
Matches are distributed among these distances:
21 7 0.20
22 11 0.31
23 11 0.31
24 6 0.17
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.40
Consensus pattern (22 bp):
CATATCATCTTTCAACTATGGT
Found at i:35351440 original size:23 final size:23
Alignment explanation
Indices: 35351370--35351485 Score: 64
Period size: 23 Copynumber: 5.1 Consensus size: 23
35351360 GATCTCATAG
* *
35351370 CATCTTTCAGCTATGGTCTTACT
1 CATCTTTCAACTATGGTCATACT
* * *
35351393 CAT-TTTTATAATGAT-GCCATA-T
1 CATCTTTCA-ACT-ATGGTCATACT
35351415 CATCTTTCAACTATGGTCATACT
1 CATCTTTCAACTATGGTCATACT
* * *
35351438 CAT-TTT-AATTATGATACCATA-A
1 CATCTTTCAACTATGGT--CATACT
* *
35351460 CATCTTTCAGCTATGGTCTTACT
1 CATCTTTCAACTATGGTCATACT
35351483 CAT
1 CAT
35351486 TTTAGGAATA
Statistics
Matches: 67, Mismatches: 16, Indels: 20
0.65 0.16 0.19
Matches are distributed among these distances:
21 9 0.13
22 24 0.36
23 26 0.39
24 8 0.12
ACGTcount: A:0.27, C:0.22, G:0.09, T:0.42
Consensus pattern (23 bp):
CATCTTTCAACTATGGTCATACT
Found at i:35351450 original size:21 final size:21
Alignment explanation
Indices: 35351381--35351450 Score: 52
Period size: 22 Copynumber: 3.2 Consensus size: 21
35351371 ATCTTTCAGC
* *
35351381 TATGGTCTTACTCATTTTTAT
1 TATGGTCATACTCATTTTAAT
* * *
35351402 AATGATGCCATA-TCATCTTTCAAC
1 TATG--GTCATACTCAT-TTT-AAT
35351426 TATGGTCATACTCATTTTAAT
1 TATGGTCATACTCATTTTAAT
35351447 TATG
1 TATG
35351451 ATACCATAAC
Statistics
Matches: 36, Mismatches: 8, Indels: 10
0.67 0.15 0.19
Matches are distributed among these distances:
21 9 0.25
22 12 0.33
23 11 0.31
24 4 0.11
ACGTcount: A:0.27, C:0.17, G:0.10, T:0.46
Consensus pattern (21 bp):
TATGGTCATACTCATTTTAAT
Found at i:35355423 original size:353 final size:354
Alignment explanation
Indices: 35354775--35355482 Score: 1220
Period size: 353 Copynumber: 2.0 Consensus size: 354
35354765 CTCGTATACT
35354775 TTGATGTAAGTGAAAGCCTAAGTTCGAATGGATAAGGAATCGGAAGCTGGTGCATTGGGTGTACG
1 TTGATGTAAGTGAAAGCCTAAGTTCGAATGGATAAGGAATCGGAAGCTGGTGCATT-GGTGTACG
* *
35354840 AATTTTGCAATATGTAGTGTCATTCACAATAGTGGAATTCATATCCCGAGACATGGGTAAATGAT
65 AATTTTGCAATATGTAGTGTCATTCACAATAGTGGAATTCATAGCCCGAGACATGGGAAAATGAT
35354905 ATCCTCTCATTGGCATTACATGGTGATGGAAACTAAACGTGACCATGGGTTCGCATTTGTGATAG
130 ATCCTCTCATTGGCATTACATGGTGATGGAAACTAAACGTGACCATGGGTTCGCATTTGTGATAG
*
35354970 ATGACATGATCATTATTTGATAATGATTGAATTTTCATGAAAGAATATGTAATGGTTACCATGAG
195 ATGACATGATCACTATTTGATAATGATTGAATTTTCATGAAAGAATATGTAATGGTTACCATGAG
35355035 ATGAAATAGGATCACATTGGGAGAATGAATATTATCCAAAAGAGATTAAGGATATCCTATGAGGG
260 ATGAAATAGGATCACATTGGGAGAATGAATATTATCCAAAAGAGATTAAGGATATCCTATGAGGG
35355100 TAACAAACTTATGACAAGGACATTGGACAA
325 TAACAAACTTATGACAAGGACATTGGACAA
* *
35355130 TTGATGTAAGTGAAAGCCTGAGTTCGAATGGATAAGGAATCGGAAGCTGGTGCGTT-GTGTACGA
1 TTGATGTAAGTGAAAGCCTAAGTTCGAATGGATAAGGAATCGGAAGCTGGTGCATTGGTGTACGA
* *
35355194 CTTTTGCATTATGTAGTGTCATTCACAATAGTGGAATTCATAGCCCGAGACATGGGAAAATGATA
66 ATTTTGCAATATGTAGTGTCATTCACAATAGTGGAATTCATAGCCCGAGACATGGGAAAATGATA
*
35355259 TCCTCTCATTGGCATTACATGGTGATGGAAACTAAACGTGACCATGGGTTCGTATTTGTGATAGA
131 TCCTCTCATTGGCATTACATGGTGATGGAAACTAAACGTGACCATGGGTTCGCATTTGTGATAGA
* * * * **
35355324 TGACTTGATCACTATTTGATAGTGATTGACTTTTCATTAAAGAATATGTAATGGTTACTGTGAGA
196 TGACATGATCACTATTTGATAATGATTGAATTTTCATGAAAGAATATGTAATGGTTACCATGAGA
* * * *
35355389 TTAAATAGGATCATATTGGGAGAATGAATATTATCCCAGAGAGATTAAGGATATCCTATGAGGGT
261 TGAAATAGGATCACATTGGGAGAATGAATATTATCCAAAAGAGATTAAGGATATCCTATGAGGGT
* *
35355454 AACACACTTATGACAAGGTCATTGGACAA
326 AACAAACTTATGACAAGGACATTGGACAA
35355483 GCATTAATCG
Statistics
Matches: 333, Mismatches: 20, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
353 279 0.84
355 54 0.16
ACGTcount: A:0.33, C:0.13, G:0.24, T:0.30
Consensus pattern (354 bp):
TTGATGTAAGTGAAAGCCTAAGTTCGAATGGATAAGGAATCGGAAGCTGGTGCATTGGTGTACGA
ATTTTGCAATATGTAGTGTCATTCACAATAGTGGAATTCATAGCCCGAGACATGGGAAAATGATA
TCCTCTCATTGGCATTACATGGTGATGGAAACTAAACGTGACCATGGGTTCGCATTTGTGATAGA
TGACATGATCACTATTTGATAATGATTGAATTTTCATGAAAGAATATGTAATGGTTACCATGAGA
TGAAATAGGATCACATTGGGAGAATGAATATTATCCAAAAGAGATTAAGGATATCCTATGAGGGT
AACAAACTTATGACAAGGACATTGGACAA
Found at i:35363634 original size:24 final size:25
Alignment explanation
Indices: 35363590--35363636 Score: 62
Period size: 24 Copynumber: 1.9 Consensus size: 25
35363580 TAAAAAAATT
*
35363590 ATATTTGTTAAAGAATGTTAAAAGC
1 ATATTTGTTAAAGAATATTAAAAGC
35363615 ATATTTG-TAAA-AATTATTAAAA
1 ATATTTGTTAAAGAA-TATTAAAA
35363637 AAAATATTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 2 0.10
24 11 0.55
25 7 0.35
ACGTcount: A:0.49, C:0.02, G:0.11, T:0.38
Consensus pattern (25 bp):
ATATTTGTTAAAGAATATTAAAAGC
Found at i:35375192 original size:27 final size:27
Alignment explanation
Indices: 35375157--35375382 Score: 274
Period size: 27 Copynumber: 8.4 Consensus size: 27
35375147 CTCTAAAATA
* *
35375157 GGTATAATGACCATAATGCCCCTATAG
1 GGTAAAATGACCGTAATGCCCCTATAG
* *
35375184 GGTAAAATGACCGTAATGCCTCTGTAG
1 GGTAAAATGACCGTAATGCCCCTATAG
* *
35375211 GGTAAAAAGACCGTAATGCCCCTTTAG
1 GGTAAAATGACCGTAATGCCCCTATAG
* * * * * *
35375238 GATAAAATAACTGTAATGCCCTTGTAA
1 GGTAAAATGACCGTAATGCCCCTATAG
* * *
35375265 GGTAAAATGATCGTAATACCCCTATAA
1 GGTAAAATGACCGTAATGCCCCTATAG
*
35375292 GGTAAAATGACCGTAATACCCCTATAG
1 GGTAAAATGACCGTAATGCCCCTATAG
*
35375319 GGTAAAATAACCGTAATGCCCCTATAG
1 GGTAAAATGACCGTAATGCCCCTATAG
* *
35375346 GGTAAAATGACCGTAATGCCCTTAGAG
1 GGTAAAATGACCGTAATGCCCCTATAG
35375373 GGT-AAATGAC
1 GGTAAAATGAC
35375383 TATTTTACCC
Statistics
Matches: 171, Mismatches: 28, Indels: 1
0.86 0.14 0.00
Matches are distributed among these distances:
26 7 0.04
27 164 0.96
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.24
Consensus pattern (27 bp):
GGTAAAATGACCGTAATGCCCCTATAG
Found at i:35375674 original size:32 final size:32
Alignment explanation
Indices: 35375630--35375760 Score: 181
Period size: 32 Copynumber: 4.1 Consensus size: 32
35375620 TTTACGGTGA
*
35375630 TGTTACTGATGGCTTTGTGCCGATCATATTAC
1 TGTTACCGATGGCTTTGTGCCGATCATATTAC
* *
35375662 TGTTACCAATGGCTTTGTGTCGATCATATTAC
1 TGTTACCGATGGCTTTGTGCCGATCATATTAC
* * * *
35375694 CGTTACTGATGGCTGTGTGCCGATCATATCAC
1 TGTTACCGATGGCTTTGTGCCGATCATATTAC
* *
35375726 TGCTACCGATGGCTTTGTGCCAATCATATTAC
1 TGTTACCGATGGCTTTGTGCCGATCATATTAC
35375758 TGT
1 TGT
35375761 AGTTATGGCT
Statistics
Matches: 83, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 83 1.00
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.37
Consensus pattern (32 bp):
TGTTACCGATGGCTTTGTGCCGATCATATTAC
Found at i:35375738 original size:64 final size:64
Alignment explanation
Indices: 35375631--35375757 Score: 200
Period size: 64 Copynumber: 2.0 Consensus size: 64
35375621 TTACGGTGAT
* * * * *
35375631 GTTACTGATGGCTTTGTGCCGATCATATTACTGTTACCAATGGCTTTGTGTCGATCATATTACC
1 GTTACTGATGGCTGTGTGCCGATCATATCACTGCTACCAATGGCTTTGTGCCAATCATATTACC
*
35375695 GTTACTGATGGCTGTGTGCCGATCATATCACTGCTACCGATGGCTTTGTGCCAATCATATTAC
1 GTTACTGATGGCTGTGTGCCGATCATATCACTGCTACCAATGGCTTTGTGCCAATCATATTAC
35375758 TGTAGTTATG
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
64 57 1.00
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.36
Consensus pattern (64 bp):
GTTACTGATGGCTGTGTGCCGATCATATCACTGCTACCAATGGCTTTGTGCCAATCATATTACC
Found at i:35377007 original size:25 final size:25
Alignment explanation
Indices: 35376979--35377155 Score: 150
Period size: 25 Copynumber: 7.2 Consensus size: 25
35376969 ACTCATCACA
* *
35376979 GCTCTTATGAGCATCCCGATGTATG
1 GCTCTTATGAGCTTCCCGATATATG
*
35377004 GCTCTCT-TGAGCTTCTCGATA-ATTG
1 GCTCT-TATGAGCTTCCCGATATA-TG
*
35377029 GCTCTCATGAGCTTCCCGAT-TAATG
1 GCTCTTATGAGCTTCCCGATAT-ATG
** *
35377054 GCTC-TCCGAAGCTTTCCGATAT-TG
1 GCTCTTATG-AGCTTCCCGATATATG
** *
35377078 GCTCGCATGAGCTTCCCGATTTATG
1 GCTCTTATGAGCTTCCCGATATATG
* *
35377103 GCTCTTATGAGCTT-CCGTTACATG
1 GCTCTTATGAGCTTCCCGATATATG
* *
35377127 GCTCATATGAGCTTCCCGTTATATG
1 GCTCTTATGAGCTTCCCGATATATG
35377152 GCTC
1 GCTC
35377156 GGAAGAGCTT
Statistics
Matches: 121, Mismatches: 21, Indels: 20
0.75 0.13 0.12
Matches are distributed among these distances:
24 39 0.32
25 79 0.65
26 3 0.02
ACGTcount: A:0.18, C:0.27, G:0.21, T:0.34
Consensus pattern (25 bp):
GCTCTTATGAGCTTCCCGATATATG
Found at i:35377097 original size:49 final size:49
Alignment explanation
Indices: 35376985--35377155 Score: 156
Period size: 49 Copynumber: 3.4 Consensus size: 49
35376975 CACAGCTCTT
* * *
35376985 ATGAGCATCCCGATGTATGGCTCTCTTGAGCTTCTCGATAATTGGCTCTC
1 ATGAGCTTCCCGAT-TATGGCTCTCTCGAGCTTCTCGATAATTGGCTCGC
35377035 ATGAGCTTCCCGATTAATGGCTCTC-CGAAGCTT-TCCGAT-ATTGGCTCGC
1 ATGAGCTTCCCGATT-ATGGCTCTCTCG-AGCTTCT-CGATAATTGGCTCGC
* * **
35377084 ATGAGCTTCCCGATTTATGGCTCT-TATGAGCTTC-CGTTACA-TGGCTCAT
1 ATGAGCTTCCCGA-TTATGGCTCTCT-CGAGCTTCTCGATA-ATTGGCTCGC
*
35377133 ATGAGCTTCCCGTTATATGGCTC
1 ATGAGCTTCCCGAT-TATGGCTC
35377156 GGAAGAGCTT
Statistics
Matches: 103, Mismatches: 8, Indels: 21
0.78 0.06 0.16
Matches are distributed among these distances:
48 4 0.04
49 64 0.62
50 35 0.34
ACGTcount: A:0.18, C:0.26, G:0.22, T:0.34
Consensus pattern (49 bp):
ATGAGCTTCCCGATTATGGCTCTCTCGAGCTTCTCGATAATTGGCTCGC
Found at i:35377154 original size:74 final size:74
Alignment explanation
Indices: 35376979--35377167 Score: 188
Period size: 74 Copynumber: 2.5 Consensus size: 74
35376969 ACTCATCACA
* * * * *
35376979 GCTCTTATGAGCATCCCGATGTATGGCTCTCTTGAGCTTCTCGATAATTGGCTCTCATGAGCTTC
1 GCTC-TATGAGCTTCCCGATATATGGCTCGCATGAGCTTCCCGATAATTGGCTCTCATGAGCTTC
35377044 CCGATTAATG
65 CCGATTAATG
** * * *
35377054 GCTCTCCGAAGCTTTCCGATAT-TGGCTCGCATGAGCTTCCCGAT-TTATGGCTCTTATGAGCTT
1 GCTCTATG-AGCTTCCCGATATATGGCTCGCATGAGCTTCCCGATAAT-TGGCTCTCATGAGCTT
35377117 -CCG-TTACATG
64 CCCGATTA-ATG
* * *
35377127 GCTCATATGAGCTTCCCGTTATATGGCTCGGAAGAGCTTCC
1 GCTC-TATGAGCTTCCCGATATATGGCTCGCATGAGCTTCC
35377168 TGTTTACATG
Statistics
Matches: 93, Mismatches: 16, Indels: 11
0.77 0.13 0.09
Matches are distributed among these distances:
72 3 0.03
73 22 0.24
74 54 0.58
75 14 0.15
ACGTcount: A:0.18, C:0.26, G:0.22, T:0.33
Consensus pattern (74 bp):
GCTCTATGAGCTTCCCGATATATGGCTCGCATGAGCTTCCCGATAATTGGCTCTCATGAGCTTCC
CGATTAATG
Found at i:35379317 original size:13 final size:13
Alignment explanation
Indices: 35379299--35379351 Score: 65
Period size: 13 Copynumber: 4.2 Consensus size: 13
35379289 AAGTCAGATA
35379299 AAATAATTAAAAT
1 AAATAATTAAAAT
35379312 AAATAATTAAAAT
1 AAATAATTAAAAT
*
35379325 AAATTAA-TAAATT
1 AAA-TAATTAAAAT
*
35379338 AAA-GATTAAAAT
1 AAATAATTAAAAT
35379350 AA
1 AA
35379352 TAAGGAAGTG
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
11 1 0.03
12 7 0.20
13 24 0.69
14 3 0.09
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (13 bp):
AAATAATTAAAAT
Found at i:35384407 original size:18 final size:18
Alignment explanation
Indices: 35384383--35384425 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
35384373 CCTCATACAT
*
35384383 TCATTTTTCTCTCTTTTC
1 TCATTTTTCTCTCCTTTC
* *
35384401 TCCTTTTTCTTTCCTTTC
1 TCATTTTTCTCTCCTTTC
35384419 TCATTTT
1 TCATTTT
35384426 CCTATTTTTC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.05, C:0.28, G:0.00, T:0.67
Consensus pattern (18 bp):
TCATTTTTCTCTCCTTTC
Found at i:35396607 original size:24 final size:25
Alignment explanation
Indices: 35396580--35396626 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
35396570 TTCAAATAAA
35396580 TAATCCAAATTTACAAT-GAAAAAT
1 TAATCCAAATTTACAATAGAAAAAT
* **
35396604 TAATTCATTTTTACAATAGAAAA
1 TAATCCAAATTTACAATAGAAAA
35396627 TGAAAGTCAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 14 0.74
25 5 0.26
ACGTcount: A:0.51, C:0.11, G:0.04, T:0.34
Consensus pattern (25 bp):
TAATCCAAATTTACAATAGAAAAAT
Found at i:35396682 original size:17 final size:18
Alignment explanation
Indices: 35396662--35396699 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
35396652 GAAAATATTT
35396662 AAGAAA-ACGAAAAAGAA
1 AAGAAAGACGAAAAAGAA
* *
35396679 AAGAAAGATGAAAAGGAA
1 AAGAAAGACGAAAAAGAA
35396697 AAG
1 AAG
35396700 TGTGGATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.71, C:0.03, G:0.24, T:0.03
Consensus pattern (18 bp):
AAGAAAGACGAAAAAGAA
Found at i:35396805 original size:26 final size:25
Alignment explanation
Indices: 35396755--35396807 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 25
35396745 AAGAAAAAAT
*
35396755 TAAATATTTATTTTTTAGTATTTTA
1 TAAATATTTATTTTTTAGTAATTTA
*
35396780 TAAAT-TTTAATTTCTTTATTAATTTA
1 TAAATATTT-ATTT-TTTAGTAATTTA
35396806 TA
1 TA
35396808 TTTACATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 3 0.12
25 9 0.38
26 12 0.50
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (25 bp):
TAAATATTTATTTTTTAGTAATTTA
Found at i:35399680 original size:90 final size:89
Alignment explanation
Indices: 35399585--35399811 Score: 291
Period size: 89 Copynumber: 2.5 Consensus size: 89
35399575 CTTAATGGTG
** * * * *
35399585 CAAAAAG-CTCTCAAACTTTAAAAAAAAAACAATTAAGTCCATGCTTTTTTTTTTGCACTCATTT
1 CAAAAAGAC-CTCAAACTTTTCAAAAAAGACAATTAAGTCCCTGCTTTTTTTTTTACACTCAATT
35399649 GGGTACTTAAACTTTCAAAATGCAT
65 GGGTACTTAAACTTTCAAAATGCAT
*
35399674 CAAAAAAGACCTCAAACCTTTTCAAAAAAGA-AATTAA-TCCCCTAC-TTTTTTTTTACACTCAA
1 C-AAAAAGACCTCAAA-CTTTTCAAAAAAGACAATTAAGT-CCCTGCTTTTTTTTTTACACTCAA
*
35399736 TTGGGTACTTGAACTTTCAAAATGCAT
63 TTGGGTACTTAAACTTTCAAAATGCAT
* *
35399763 CAAAAAGACCCTCAAACTTTTCAAAAAAGGCAATTAAGCCCCTGCTTTT
1 CAAAAAGA-CCTCAAACTTTTCAAAAAAGACAATTAAGTCCCTGCTTTT
35399812 ATTAAAAATT
Statistics
Matches: 119, Mismatches: 11, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
88 20 0.17
89 62 0.52
90 25 0.21
91 12 0.10
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (89 bp):
CAAAAAGACCTCAAACTTTTCAAAAAAGACAATTAAGTCCCTGCTTTTTTTTTTACACTCAATTG
GGTACTTAAACTTTCAAAATGCAT
Found at i:35399996 original size:27 final size:28
Alignment explanation
Indices: 35399929--35400005 Score: 75
Period size: 27 Copynumber: 2.8 Consensus size: 28
35399919 AAAAAACGTA
* *
35399929 AAAAATATAAAAAAATTGTAAAATTTTAT
1 AAAAATAT-AAAAAATTATAAAATTATAT
**
35399958 AAAAATCGAAAAAATTATAAAA-TATAT
1 AAAAATATAAAAAATTATAAAATTATAT
* **
35399985 AGAAATATAAAATTTTATAAA
1 AAAAATATAAAAAATTATAAA
35400006 CTCATAAGAA
Statistics
Matches: 39, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
27 20 0.51
28 13 0.33
29 6 0.15
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (28 bp):
AAAAATATAAAAAATTATAAAATTATAT
Found at i:35401815 original size:87 final size:85
Alignment explanation
Indices: 35401702--35401910 Score: 262
Period size: 87 Copynumber: 2.4 Consensus size: 85
35401692 TAAGTGCAGG
** *
35401702 GGCTTAATT-TTTTTTAAAAAAATTTGAGGGTCTTTTTGATGCATTTTGAAAGTTCAAGTACCCA
1 GGCTTAATTGTTTTTTTTAAAAGTTTGAGGG-CTTTTTGATGCATTTTGAAAGTTCAAGTACCCA
35401766 ATTGAGTG-AAAAAAAAACA-A
65 ATTGAGTGCAAAAAAAAA-AGA
* * * * *
35401786 GGATTTAATTGGTTTTTTTTAAAAGTTTGAGGACTTTTTTGATGCATTTTGAAAGTTTAAGTGCT
1 GG-CTTAATT-GTTTTTTTTAAAAGTTTGAGGGC-TTTTTGATGCATTTTGAAAGTTCAAGTACC
35401851 CAATTGAGTGCAAAAAAAAAAGA
63 CAATTGAGTGCAAAAAAAAAAGA
**
35401874 GGCTTAATTGTTTTTTTTTTAAGTTTGAGGGCTTTTT
1 GGCTTAATTGTTTTTTTTAAAAGTTTGAGGGCTTTTT
35401911 ACACCTTTAA
Statistics
Matches: 107, Mismatches: 12, Indels: 11
0.82 0.09 0.08
Matches are distributed among these distances:
84 2 0.02
85 11 0.10
86 21 0.20
87 61 0.57
88 12 0.11
ACGTcount: A:0.32, C:0.07, G:0.19, T:0.42
Consensus pattern (85 bp):
GGCTTAATTGTTTTTTTTAAAAGTTTGAGGGCTTTTTGATGCATTTTGAAAGTTCAAGTACCCAA
TTGAGTGCAAAAAAAAAAGA
Found at i:35403101 original size:24 final size:25
Alignment explanation
Indices: 35403074--35403120 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
35403064 TTATAATAAT
*
35403074 TTTTATATTACA-TTAATGTTTATA
1 TTTTAAATTACATTTAATGTTTATA
*
35403098 TTTTAAATTAGATTTAATGTTTA
1 TTTTAAATTACATTTAATGTTTA
35403121 GGATTATATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 10 0.50
25 10 0.50
ACGTcount: A:0.34, C:0.02, G:0.06, T:0.57
Consensus pattern (25 bp):
TTTTAAATTACATTTAATGTTTATA
Found at i:35404987 original size:27 final size:27
Alignment explanation
Indices: 35404949--35405116 Score: 106
Period size: 27 Copynumber: 6.2 Consensus size: 27
35404939 ACAGAAGCTT
*
35404949 TTCTTTCATAAT-TCACCATAAAGGATA
1 TTCTTTCATAATAT-ACCACAAAGGATA
* * *
35404976 TTCTTTCGTAATATGCCACAAAGGTTA
1 TTCTTTCATAATATACCACAAAGGATA
* * * * *
35405003 TTCTTTCATAGTTTGCCACAAAGGTTG
1 TTCTTTCATAATATACCACAAAGGATA
* * * *
35405030 TTTTTTCATAATATGCCACAAAAGTTA
1 TTCTTTCATAATATACCACAAAGGATA
* ** *
35405057 TTCTTTCATAGCT-CGCCACAAAGGTTA
1 TTCTTTCATA-ATATACCACAAAGGATA
* ** * *
35405084 TTCTTTCGTAATACGCCACAAATGTTA
1 TTCTTTCATAATATACCACAAAGGATA
35405111 TTCTTT
1 TTCTTT
35405117 TAATCTTTGC
Statistics
Matches: 118, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
26 1 0.01
27 115 0.97
28 2 0.02
ACGTcount: A:0.29, C:0.20, G:0.12, T:0.39
Consensus pattern (27 bp):
TTCTTTCATAATATACCACAAAGGATA
Found at i:35405042 original size:54 final size:54
Alignment explanation
Indices: 35404949--35405170 Score: 248
Period size: 54 Copynumber: 4.1 Consensus size: 54
35404939 ACAGAAGCTT
* ** * * * *
35404949 TTCTTTCATAATTCACCATAAAGGATATTCTTTCGTAATATGCCACAAAGGTTA
1 TTCTTTCATAGTTTGCCACAAAGGTTATTATTTCGTAATACGCCACAAAGGTTA
* * * * *
35405003 TTCTTTCATAGTTTGCCACAAAGGTTGTTTTTTCATAATATGCCACAAAAGTTA
1 TTCTTTCATAGTTTGCCACAAAGGTTATTATTTCGTAATACGCCACAAAGGTTA
* * * *
35405057 TTCTTTCATAGCTCGCCACAAAGGTTATTCTTTCGTAATACGCCACAAATGTTA
1 TTCTTTCATAGTTTGCCACAAAGGTTATTATTTCGTAATACGCCACAAAGGTTA
* * * *
35405111 TTCTTTTA-ATCTTTGCCACAAAGGTTCTTATTTCGTAATACGCCACAAAGGCTA
1 TTCTTTCATA-GTTTGCCACAAAGGTTATTATTTCGTAATACGCCACAAAGGTTA
35405165 TTCTTT
1 TTCTTT
35405171 TCTGACGTGT
Statistics
Matches: 143, Mismatches: 24, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
53 1 0.01
54 142 0.99
ACGTcount: A:0.29, C:0.20, G:0.12, T:0.39
Consensus pattern (54 bp):
TTCTTTCATAGTTTGCCACAAAGGTTATTATTTCGTAATACGCCACAAAGGTTA
Found at i:35405061 original size:81 final size:81
Alignment explanation
Indices: 35404974--35405170 Score: 218
Period size: 81 Copynumber: 2.4 Consensus size: 81
35404964 CCATAAAGGA
* * ** * *
35404974 TATTCTTTCGTAATATGCCACAAAGGTTATTCTTTCATAGTTTGCCACAAAGGTTGTT-TTTTCA
1 TATTCTTTCGTAATACGCCACAAAGGTTATTCTTTCATAATACGCCACAAAGGTTATTCTTTTAA
35405038 TAATATGCCACAAAAGT
66 T-ATATGCCACAAAAGT
* * * *
35405055 TATTCTTTCATAGCT-CGCCACAAAGGTTATTCTTTCGTAATACGCCACAAATGTTATTCTTTTA
1 TATTCTTTCGTA-ATACGCCACAAAGGTTATTCTTTCATAATACGCCACAAAGGTTATTCTTTTA
* * *
35405119 ATCTTTGCCACAAAGGT
65 ATATATGCCACAAAAGT
* * *
35405136 TCTTATTTCGTAATACGCCACAAAGGCTATTCTTT
1 TATTCTTTCGTAATACGCCACAAAGGTTATTCTTT
35405171 TCTGACGTGT
Statistics
Matches: 95, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
80 1 0.01
81 87 0.92
82 7 0.07
ACGTcount: A:0.28, C:0.20, G:0.13, T:0.39
Consensus pattern (81 bp):
TATTCTTTCGTAATACGCCACAAAGGTTATTCTTTCATAATACGCCACAAAGGTTATTCTTTTAA
TATATGCCACAAAAGT
Found at i:35405128 original size:27 final size:28
Alignment explanation
Indices: 35404989--35405171 Score: 127
Period size: 27 Copynumber: 6.8 Consensus size: 28
35404979 TTTCGTAATA
* *
35404989 TGCCACAAAGGTTATTC-TTTCATAGTT
1 TGCCACAAAGGTTATTCTTTTAATACTT
* * * *
35405016 TGCCACAAAGGTTGTT-TTTTCATAATA
1 TGCCACAAAGGTTATTCTTTTAATACTT
* *
35405043 TGCCACAAAAGTTATTC-TTTCATAGC-T
1 TGCCACAAAGGTTATTCTTTTAATA-CTT
*
35405070 CGCCACAAAGGTTATTCTTTCGTAATAC--
1 TGCCACAAAGGTTATTCTTT--TAATACTT
*
35405098 -GCCACAAATGTTATTCTTTTAAT-CTT
1 TGCCACAAAGGTTATTCTTTTAATACTT
* *
35405124 TGCCACAAAGGTTCTTATTTCGTAATAC--
1 TGCCACAAAGGTTATTCTTT--TAATACTT
*
35405152 -GCCACAAAGGCTATTCTTTT
1 TGCCACAAAGGTTATTCTTTT
35405172 CTGACGTGTT
Statistics
Matches: 127, Mismatches: 17, Indels: 26
0.75 0.10 0.15
Matches are distributed among these distances:
24 1 0.01
25 5 0.04
27 109 0.86
28 2 0.02
29 5 0.04
30 5 0.04
ACGTcount: A:0.28, C:0.21, G:0.13, T:0.38
Consensus pattern (28 bp):
TGCCACAAAGGTTATTCTTTTAATACTT
Found at i:35411303 original size:37 final size:37
Alignment explanation
Indices: 35411227--35411355 Score: 199
Period size: 37 Copynumber: 3.5 Consensus size: 37
35411217 AATACTTATA
* *
35411227 TTTTAATTATGT-GTTAATTC-AAGACTTATGTAATGT
1 TTTTAATTATGTAG-TGATTCAAAGACTTATGTAATAT
*
35411263 TTTTAATTATGTAGTGATTCAAAGACTTATGAAATAT
1 TTTTAATTATGTAGTGATTCAAAGACTTATGTAATAT
*
35411300 TTTTAATTATGTAGTGATTCAAAGATTTATGTAATAT
1 TTTTAATTATGTAGTGATTCAAAGACTTATGTAATAT
35411337 TTTTAATTATGTAGTGATT
1 TTTTAATTATGTAGTGATT
35411356 TAATTCGGAT
Statistics
Matches: 86, Mismatches: 5, Indels: 3
0.91 0.05 0.03
Matches are distributed among these distances:
36 17 0.20
37 69 0.80
ACGTcount: A:0.33, C:0.04, G:0.14, T:0.49
Consensus pattern (37 bp):
TTTTAATTATGTAGTGATTCAAAGACTTATGTAATAT
Found at i:35411348 original size:17 final size:17
Alignment explanation
Indices: 35411252--35411349 Score: 52
Period size: 17 Copynumber: 5.4 Consensus size: 17
35411242 AATTCAAGAC
*
35411252 TTATGTAATGTTTTTAA
1 TTATGTAATATTTTTAA
* ***
35411269 TTATGTAGTGATTCAAAGA
1 TTATGTAAT-ATTTTTA-A
*
35411288 CTTATGAAATATTTTTAA
1 -TTATGTAATATTTTTAA
* ***
35411306 TTATGTAGTGATTCAAAGA
1 TTATGTAAT-ATTTTTA-A
35411325 TTTATGTAATATTTTTAA
1 -TTATGTAATATTTTTAA
35411343 TTATGTA
1 TTATGTA
35411350 GTGATTTAAT
Statistics
Matches: 56, Mismatches: 19, Indels: 12
0.64 0.22 0.14
Matches are distributed among these distances:
17 22 0.39
18 9 0.16
19 10 0.18
20 15 0.27
ACGTcount: A:0.35, C:0.03, G:0.13, T:0.49
Consensus pattern (17 bp):
TTATGTAATATTTTTAA
Found at i:35411370 original size:9 final size:9
Alignment explanation
Indices: 35411356--35411425 Score: 95
Period size: 9 Copynumber: 7.6 Consensus size: 9
35411346 TGTAGTGATT
*
35411356 TAATTCGGA
1 TAATTCGGG
35411365 TAATTCGGG
1 TAATTCGGG
*
35411374 TAATTTTCAGG
1 TAA--TTCGGG
35411385 TAATTCGGG
1 TAATTCGGG
35411394 TAATTCGGG
1 TAATTCGGG
*
35411403 TAAATCGGG
1 TAATTCGGG
35411412 TAATTCGGG
1 TAATTCGGG
35411421 TAATT
1 TAATT
35411426 TTTAACCAAA
Statistics
Matches: 54, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
9 46 0.85
11 8 0.15
ACGTcount: A:0.27, C:0.10, G:0.27, T:0.36
Consensus pattern (9 bp):
TAATTCGGG
Found at i:35412458 original size:22 final size:20
Alignment explanation
Indices: 35412419--35412459 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
35412409 CAATTAAAAA
*
35412419 TAAAAAATTTGCTTTTATTT
1 TAAAAAATTTGCTCTTATTT
35412439 TAAAAAATATTAGCTCTTATT
1 TAAAAAAT-TT-GCTCTTATT
35412460 AAAAATATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 8 0.44
21 2 0.11
22 8 0.44
ACGTcount: A:0.39, C:0.07, G:0.05, T:0.49
Consensus pattern (20 bp):
TAAAAAATTTGCTCTTATTT
Found at i:35412631 original size:19 final size:18
Alignment explanation
Indices: 35412605--35412679 Score: 96
Period size: 19 Copynumber: 4.0 Consensus size: 18
35412595 CTTTTTTCTT
35412605 AACTTCAACAGAAACTAAA
1 AACTTCAACAGAAAC-AAA
* *
35412624 AGCTTCAACATAAACACAA
1 AACTTCAACAGAAACA-AA
*
35412643 AACTTCAATAGAAACCAAA
1 AACTTCAACAGAAA-CAAA
35412662 AACTTCAACAGAAACAAA
1 AACTTCAACAGAAACAAA
35412680 TTTTTGGCCA
Statistics
Matches: 48, Mismatches: 6, Indels: 5
0.81 0.10 0.08
Matches are distributed among these distances:
18 5 0.10
19 41 0.85
20 2 0.04
ACGTcount: A:0.57, C:0.23, G:0.05, T:0.15
Consensus pattern (18 bp):
AACTTCAACAGAAACAAA
Found at i:35412656 original size:38 final size:38
Alignment explanation
Indices: 35412605--35412677 Score: 110
Period size: 38 Copynumber: 1.9 Consensus size: 38
35412595 CTTTTTTCTT
* * *
35412605 AACTTCAACAGAAACTAAAAGCTTCAACATAAACACAA
1 AACTTCAACAGAAACCAAAAACTTCAACAGAAACACAA
*
35412643 AACTTCAATAGAAACCAAAAACTTCAACAGAAACA
1 AACTTCAACAGAAACCAAAAACTTCAACAGAAACA
35412678 AATTTTTGGC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 31 1.00
ACGTcount: A:0.56, C:0.23, G:0.05, T:0.15
Consensus pattern (38 bp):
AACTTCAACAGAAACCAAAAACTTCAACAGAAACACAA
Found at i:35428554 original size:24 final size:24
Alignment explanation
Indices: 35428527--35428578 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
35428517 TTAGTAAGTC
*
35428527 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
35428551 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
35428575 AAAT
1 AAAT
35428579 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:35430524 original size:24 final size:24
Alignment explanation
Indices: 35430497--35430548 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
35430487 TTAGTAAGTC
*
35430497 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
35430521 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
35430545 AAAT
1 AAAT
35430549 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:35431004 original size:18 final size:18
Alignment explanation
Indices: 35430983--35431017 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
35430973 TTTTTTAATT
35430983 TGTGTATGTTTTCTTTTG
1 TGTGTATGTTTTCTTTTG
* *
35431001 TGTGTTTGTTTTGTTTT
1 TGTGTATGTTTTCTTTT
35431018 CCTATGTAGG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.03, C:0.03, G:0.23, T:0.71
Consensus pattern (18 bp):
TGTGTATGTTTTCTTTTG
Found at i:35439923 original size:50 final size:50
Alignment explanation
Indices: 35439869--35440014 Score: 141
Period size: 50 Copynumber: 2.9 Consensus size: 50
35439859 AAAGTAGTTA
* * * *
35439869 CTTGATATTTCTACTTCAGCAAG-GGAATGTTGCGACTATGGAGACAGTAG
1 CTTGATATTGCAACTTCAG-AAGAGGAATATTGCGACTATGAAGACAGTAG
* * * *
35439919 CTTGATGTTGCAATTTCAGTAGAGGAATATTGCGACTATGAAGATAGTAG
1 CTTGATATTGCAACTTCAGAAGAGGAATATTGCGACTATGAAGACAGTAG
* * * * * * *
35439969 ATTGATATCGCGACTTTAGTAGAGGAATGTTGCTACTATGAAGACA
1 CTTGATATTGCAACTTCAGAAGAGGAATATTGCGACTATGAAGACA
35440015 ATTTTCTCAA
Statistics
Matches: 78, Mismatches: 17, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
49 2 0.03
50 76 0.97
ACGTcount: A:0.31, C:0.13, G:0.25, T:0.31
Consensus pattern (50 bp):
CTTGATATTGCAACTTCAGAAGAGGAATATTGCGACTATGAAGACAGTAG
Found at i:35442092 original size:28 final size:28
Alignment explanation
Indices: 35442048--35442103 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
35442038 GTAAAAAGAA
*
35442048 AGCAAAATTTTCCTCTTCTTTTTTCTTC
1 AGCAAAATTTTCCTCTTCTTCTTTCTTC
*
35442076 AGCAAAATTTTCTTCTTCTTCTTTCTTC
1 AGCAAAATTTTCCTCTTCTTCTTTCTTC
35442104 CTAACTTGGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.18, C:0.25, G:0.04, T:0.54
Consensus pattern (28 bp):
AGCAAAATTTTCCTCTTCTTCTTTCTTC
Found at i:35451557 original size:18 final size:20
Alignment explanation
Indices: 35451516--35451558 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
35451506 TGGGTGTAAT
*
35451516 AAAATGTATATAATAAAATT
1 AAAATGTATATAATAAAATC
35451536 AAAATGTATA-AAT-AAATC
1 AAAATGTATATAATAAAATC
35451554 AAAAT
1 AAAAT
35451559 TAAGCTTTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 9 0.41
19 3 0.14
20 10 0.45
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.30
Consensus pattern (20 bp):
AAAATGTATATAATAAAATC
Found at i:35451561 original size:24 final size:20
Alignment explanation
Indices: 35451515--35451551 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
35451505 ATGGGTGTAA
35451515 TAAAATGTATATAATAAAAT
1 TAAAATGTATATAATAAAAT
35451535 TAAAATGTATA-AATAAA
1 TAAAATGTATATAATAAA
35451552 TCAAAATTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.32
Consensus pattern (20 bp):
TAAAATGTATATAATAAAAT
Found at i:35457446 original size:23 final size:24
Alignment explanation
Indices: 35457403--35457460 Score: 68
Period size: 23 Copynumber: 2.5 Consensus size: 24
35457393 TAATTCATTC
*
35457403 ATTTATATAAATAAAACAATAAAT
1 ATTTATATATATAAAACAATAAAT
*
35457427 ATTTAT-TATATAATAA-AATATAT
1 ATTTATATATATAA-AACAATAAAT
35457450 A-TTATATATAT
1 ATTTATATATAT
35457461 CATTATGTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
22 4 0.13
23 18 0.60
24 8 0.27
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (24 bp):
ATTTATATATATAAAACAATAAAT
Found at i:35457732 original size:71 final size:70
Alignment explanation
Indices: 35457649--35457814 Score: 201
Period size: 71 Copynumber: 2.3 Consensus size: 70
35457639 TTATATGTAC
* * * *
35457649 TAAAAATAATGATATTTGAAATAATT-AATTGATTTAATAATATTATAATTTTC-ATACCCATAA
1 TAAAAAAAATGATATTTGAAATAATTGAATT-ATTTAATAATATTAGAATTTACAATACCCACAA
35457712 TGTAGG
65 TGTAGG
* * *
35457718 TGAAAAAACAATGATATTTGAAATAATTGTATTATTTTATAATATTAGAATTTACAATATCCACA
1 T-AAAAAA-AATGATATTTGAAATAATTGAATTATTTAATAATATTAGAATTTACAATACCCACA
35457783 ATGTAGG
64 ATGTAGG
* *
35457790 TAAAAAAAATAAATATTTGACATAA
1 TAAAAAAAAT-GATATTTGAAATAA
35457815 AAAATATAAA
Statistics
Matches: 83, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
69 1 0.01
70 8 0.10
71 56 0.67
72 18 0.22
ACGTcount: A:0.48, C:0.06, G:0.09, T:0.37
Consensus pattern (70 bp):
TAAAAAAAATGATATTTGAAATAATTGAATTATTTAATAATATTAGAATTTACAATACCCACAAT
GTAGG
Found at i:35458052 original size:56 final size:57
Alignment explanation
Indices: 35457957--35458098 Score: 146
Period size: 56 Copynumber: 2.5 Consensus size: 57
35457947 AATAAAGGAG
* * * *
35457957 TTATTAATTAAAAATATGAATTAAAAATAAATTTTAAAAA-CTTGAACACAACAT-AT
1 TTATTAATTAAAAACATTAATTAAAAATAAATATAAAAAATCTTGAA-ACAACATAAT
* * *
35458013 TTATTAACTAAAAACATTAATTAAAAATTAAA-ATAAAAAATCTTTAAACAACGTGAAT
1 TTATTAATTAAAAACATTAATTAAAAA-TAAATATAAAAAATCTTGAAACAACAT-AAT
* *
35458071 TAATTTAATTAAAAGCATTAATTAAAAA
1 TTA-TTAATTAAAAACATTAATTAAAAA
35458099 AGTAAAAATT
Statistics
Matches: 71, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
56 36 0.51
57 9 0.13
58 4 0.06
59 22 0.31
ACGTcount: A:0.56, C:0.07, G:0.04, T:0.33
Consensus pattern (57 bp):
TTATTAATTAAAAACATTAATTAAAAATAAATATAAAAAATCTTGAAACAACATAAT
Found at i:35460575 original size:22 final size:23
Alignment explanation
Indices: 35460532--35460576 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
35460522 ATATTCATTT
*
35460532 TTTTTTTTACTTTTGTACTTAAA
1 TTTTTTTTACTTTAGTACTTAAA
*
35460555 TTTTTTTTA-TTTAGTAGTTAAA
1 TTTTTTTTACTTTAGTACTTAAA
35460577 AGTAAATGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 11 0.55
23 9 0.45
ACGTcount: A:0.24, C:0.04, G:0.07, T:0.64
Consensus pattern (23 bp):
TTTTTTTTACTTTAGTACTTAAA
Found at i:35465175 original size:22 final size:23
Alignment explanation
Indices: 35465142--35465197 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 23
35465132 TAGTTTTAGG
**
35465142 TTTAG-TTTTCTCTA-GGTTTTC
1 TTTAGTTTTTCTCTACACTTTTC
35465163 TTTAGTTTTTCTCTACACTTTTC
1 TTTAGTTTTTCTCTACACTTTTC
35465186 TTTA-TTTTTCTC
1 TTTAGTTTTTCTC
35465198 ATTTTCTACC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
21 5 0.16
22 17 0.55
23 9 0.29
ACGTcount: A:0.11, C:0.18, G:0.07, T:0.64
Consensus pattern (23 bp):
TTTAGTTTTTCTCTACACTTTTC
Found at i:35466924 original size:21 final size:20
Alignment explanation
Indices: 35466900--35466941 Score: 63
Period size: 17 Copynumber: 2.2 Consensus size: 20
35466890 ATATTTGATG
35466900 AATTAATT-T-TTTTTC-TA
1 AATTAATTATGTTTTTCTTA
35466917 AATTAATTATGTTTTTCTTA
1 AATTAATTATGTTTTTCTTA
35466937 AATTA
1 AATTA
35466942 TAAACAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 8 0.36
18 1 0.05
19 6 0.27
20 7 0.32
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.60
Consensus pattern (20 bp):
AATTAATTATGTTTTTCTTA
Found at i:35470138 original size:40 final size:42
Alignment explanation
Indices: 35470054--35470139 Score: 106
Period size: 41 Copynumber: 2.1 Consensus size: 42
35470044 TTCAAAAAAA
*
35470054 TTTCAAAAAATCCCAAAAATATTTTTCGCTTTTGTTTTTAAT
1 TTTCAAAAAATCCAAAAAATATTTTTCGCTTTTGTTTTTAAT
* *
35470096 TTTCCAAAAAT-CAAAAAATATTTCTT-G-TTTTCGTTTTTATT
1 TTTCAAAAAATCCAAAAAATATTT-TTCGCTTTT-GTTTTTAAT
35470137 TTT
1 TTT
35470140 TGTTATTGCA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
40 4 0.10
41 23 0.59
42 12 0.31
ACGTcount: A:0.31, C:0.13, G:0.05, T:0.51
Consensus pattern (42 bp):
TTTCAAAAAATCCAAAAAATATTTTTCGCTTTTGTTTTTAAT
Found at i:35471939 original size:22 final size:23
Alignment explanation
Indices: 35471899--35471944 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 23
35471889 ATTGTCCCAG
*
35471899 GTATCACGATATCCTCTTT-TCA
1 GTATCACGATATCCCCTTTGTCA
35471921 GTATCACGATA-CCACCTTTGTCA
1 GTATCACGATATCC-CCTTTGTCA
35471944 G
1 G
35471945 GGGACAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 2 0.10
22 15 0.71
23 4 0.19
ACGTcount: A:0.24, C:0.28, G:0.13, T:0.35
Consensus pattern (23 bp):
GTATCACGATATCCCCTTTGTCA
Found at i:35473499 original size:21 final size:22
Alignment explanation
Indices: 35473473--35473533 Score: 65
Period size: 21 Copynumber: 2.9 Consensus size: 22
35473463 CAAGTGAGAG
35473473 GAGGCACATGGCCGTGTG-GCT
1 GAGGCACATGGCCGTGTGAGCT
* *
35473494 GAGGCACA-CGCCTATGTGAGCT
1 GAGGCACATGGCC-GTGTGAGCT
*
35473516 -AGGGACATGGCCGTGTGA
1 GAGGCACATGGCCGTGTGA
35473534 ACAGACCATG
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
20 3 0.09
21 23 0.72
22 6 0.19
ACGTcount: A:0.20, C:0.23, G:0.39, T:0.18
Consensus pattern (22 bp):
GAGGCACATGGCCGTGTGAGCT
Found at i:35474577 original size:10 final size:10
Alignment explanation
Indices: 35474562--35474595 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
35474552 CTCTTTAAGC
35474562 TTTAGTTTAA
1 TTTAGTTTAA
35474572 TTTAGTTTAA
1 TTTAGTTTAA
* *
35474582 TTTATTTTAC
1 TTTAGTTTAA
35474592 TTTA
1 TTTA
35474596 AATATGTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.26, C:0.03, G:0.06, T:0.65
Consensus pattern (10 bp):
TTTAGTTTAA
Found at i:35477544 original size:51 final size:51
Alignment explanation
Indices: 35477418--35477613 Score: 209
Period size: 51 Copynumber: 3.9 Consensus size: 51
35477408 AGTGAAAGTG
* * *
35477418 ATGGTCACGTGTGTAGTACTATGTGCAAGCTACTACGTGTACCGGA-A-TG
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTA
* * * *
35477467 ATAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATAGT-
1 AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTA
* * * * * *
35477518 TTCGATCACGTGTGTAGTACTATGTGCAGACTACTACGTGTATCGGATGGTA
1 AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTA
* * *
35477570 ATGGTCACATGTGTAGTACTATGTGCATGCTACTATGTGAACCG
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCG
35477614 AACATCATTG
Statistics
Matches: 118, Mismatches: 25, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
49 2 0.02
50 38 0.32
51 76 0.64
52 2 0.02
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (51 bp):
ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTA
Found at i:35477552 original size:101 final size:102
Alignment explanation
Indices: 35477422--35477606 Score: 295
Period size: 101 Copynumber: 1.8 Consensus size: 102
35477412 AAAGTGATGG
*
35477422 TCACGTGTGTAGTACTATGTGCAAGCTACTACGTGTACCGGAATGAT-A-GGTCGCATGTGTAGT
1 TCACGTGTGTAGTACTATGTGCAAGCTACTACGTGTACCGG-ATGATAATGGTCACATGTGTAGT
35477485 ACTATGTGCAGGCTACTATGCGTACCAGATAGTTTCGA
65 ACTATGTGCAGGCTACTATGCGTACCAGATAGTTTCGA
* *
35477523 TCACGTGTGTAGTACTATGTGC-AGACTACTACGTGTATCGGATGGTAATGGTCACATGTGTAGT
1 TCACGTGTGTAGTACTATGTGCAAG-CTACTACGTGTACCGGATGATAATGGTCACATGTGTAGT
*
35477587 ACTATGTGCATGCTACTATG
65 ACTATGTGCAGGCTACTATG
35477607 TGAACCGAAC
Statistics
Matches: 77, Mismatches: 4, Indels: 5
0.90 0.05 0.06
Matches are distributed among these distances:
100 6 0.08
101 38 0.49
102 33 0.43
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.31
Consensus pattern (102 bp):
TCACGTGTGTAGTACTATGTGCAAGCTACTACGTGTACCGGATGATAATGGTCACATGTGTAGTA
CTATGTGCAGGCTACTATGCGTACCAGATAGTTTCGA
Found at i:35477642 original size:41 final size:42
Alignment explanation
Indices: 35477597--35477688 Score: 98
Period size: 45 Copynumber: 2.1 Consensus size: 42
35477587 ACTATGTGCA
* *
35477597 TGCTACTATG-TGA-ACCGAACATCATTGATTAGTAAGGTGGT
1 TGCTA-TATGTTGACACCGAACATCATTGATTAATAAGGTGAT
* *
35477638 TGCTATGTGTTGATTCCACCGGACATCATTGATTAATAAGGTGAT
1 TGCTATATGTTGA---CACCGAACATCATTGATTAATAAGGTGAT
35477683 TGCTAT
1 TGCTAT
35477689 GTGCTGAATC
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
40 3 0.07
41 8 0.19
45 31 0.74
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (42 bp):
TGCTATATGTTGACACCGAACATCATTGATTAATAAGGTGAT
Found at i:35477664 original size:45 final size:45
Alignment explanation
Indices: 35477610--35477704 Score: 145
Period size: 45 Copynumber: 2.1 Consensus size: 45
35477600 TACTATGTGA
* * * *
35477610 ACCGAACATCATTGATTAGTAAGGTGGTTGCTATGTGTTGATTCC
1 ACCGAACATCATTGATTAATAAGGTGATTGCTATGTGCTGAATCC
*
35477655 ACCGGACATCATTGATTAATAAGGTGATTGCTATGTGCTGAATCC
1 ACCGAACATCATTGATTAATAAGGTGATTGCTATGTGCTGAATCC
35477700 ACCGA
1 ACCGA
35477705 GTATCTGTTA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (45 bp):
ACCGAACATCATTGATTAATAAGGTGATTGCTATGTGCTGAATCC
Found at i:35480896 original size:19 final size:18
Alignment explanation
Indices: 35480874--35480921 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 18
35480864 AATTTAAAGC
35480874 ATTTTTAATTTTTTAATAA
1 ATTTTTAATTTTTTAA-AA
* *
35480893 ATTTTATATTTTTTTGAAA
1 ATTTT-TAATTTTTTAAAA
*
35480912 ATTTTAAATT
1 ATTTTTAATT
35480922 AAAAAAATTA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 3 0.12
19 12 0.50
20 9 0.38
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.62
Consensus pattern (18 bp):
ATTTTTAATTTTTTAAAA
Found at i:35482188 original size:2 final size:2
Alignment explanation
Indices: 35482181--35482211 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
35482171 TGGCAGTGAG
35482181 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
35482212 CCACTTATTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:35485345 original size:18 final size:18
Alignment explanation
Indices: 35485282--35485345 Score: 67
Period size: 18 Copynumber: 3.6 Consensus size: 18
35485272 ATAGATAAGT
*
35485282 AAGAAGATGCGATCAAGG
1 AAGAAGATGTGATCAAGG
*
35485300 AAGAAGATGTAGA-CAAGA
1 AAGAAGATGT-GATCAAGG
* *
35485318 AAAAATATGTGATCAAGG
1 AAGAAGATGTGATCAAGG
*
35485336 AAGGAGATGT
1 AAGAAGATGT
35485346 AGGGGGTGAA
Statistics
Matches: 36, Mismatches: 8, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
17 2 0.06
18 32 0.89
19 2 0.06
ACGTcount: A:0.48, C:0.06, G:0.30, T:0.16
Consensus pattern (18 bp):
AAGAAGATGTGATCAAGG
Found at i:35490783 original size:13 final size:13
Alignment explanation
Indices: 35490765--35490790 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
35490755 TAAAATTGAA
35490765 CAATTTGCAAAAT
1 CAATTTGCAAAAT
35490778 CAATTTGCAAAAT
1 CAATTTGCAAAAT
35490791 AAGAAGTGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.15, G:0.08, T:0.31
Consensus pattern (13 bp):
CAATTTGCAAAAT
Found at i:35494104 original size:161 final size:162
Alignment explanation
Indices: 35493833--35494153 Score: 504
Period size: 161 Copynumber: 2.0 Consensus size: 162
35493823 ATGTCGCTAG
35493833 CCTTATTTACTTTCAAAGGATATAAAATTTATTACAATGCCTCCATGATTCTAGGGTACCAAATT
1 CCTTATTTACTTTCAAAGGATATAAAATTTATTACAATGCCTCCATGATTCTAGGGTACCAAATT
* ** *
35493898 TTTTATTTCTTATTAACTTGCGTATAATTTACCTTAGAATGTAACAAACACAAATATGAGTTGCA
66 TGTTATTTCTTATTAACTAACGTACAATTTACCTTAGAATGTAACAAACACAAATATGAGTTGCA
35493963 ATGAAAATTTGTGGTTTCTTATTAACTTACTA
131 ATGAAAATTTGTGGTTTCTTATTAACTTACTA
* * * * *
35493995 CCTTA-TTACTTTTAGAGGATAT-AAATTTCATTACAATGCTTTCATGATTTTAGGGTACCAAAT
1 CCTTATTTACTTTCAAAGGATATAAAATTT-ATTACAATGCCTCCATGATTCTAGGGTACCAAAT
*
35494058 TTGTTATTTCTTATTAACTAACGTACAATTTTA-CTTAGAATGTAACAAGCACAAATATGAGTTG
65 TTGTTATTTCTTATTAACTAACGTACAA-TTTACCTTAGAATGTAACAAACACAAATATGAGTTG
*
35494122 CAATGAAAATTTGTGGTTTCTTATTCACTTAC
129 CAATGAAAATTTGTGGTTTCTTATTAACTTAC
35494154 GTACAATTTA
Statistics
Matches: 146, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
160 6 0.04
161 131 0.90
162 9 0.06
ACGTcount: A:0.33, C:0.14, G:0.12, T:0.40
Consensus pattern (162 bp):
CCTTATTTACTTTCAAAGGATATAAAATTTATTACAATGCCTCCATGATTCTAGGGTACCAAATT
TGTTATTTCTTATTAACTAACGTACAATTTACCTTAGAATGTAACAAACACAAATATGAGTTGCA
ATGAAAATTTGTGGTTTCTTATTAACTTACTA
Found at i:35494176 original size:74 final size:74
Alignment explanation
Indices: 35494054--35494221 Score: 216
Period size: 74 Copynumber: 2.3 Consensus size: 74
35494044 TTAGGGTACC
*
35494054 AAATTTGTTA-TTTCTTATTAACTAACGTACAATTTTACTTAGAATGTAAC-AAGCACAAATATG
1 AAATTTG-TAGTTTCTTATTAACTAACGTACAATTTTACTTAGAATGTAACAAAG-ACAAATATA
* *
35494117 AGTTGCAATGA
64 AGTTACAATAA
* * * *
35494128 AAATTTGTGGTTTCTTATTCACTTACGTACAA-TTTACGTTAGAGTGTAACAAAGACAAATATAA
1 AAATTTGTAGTTTCTTATTAACTAACGTACAATTTTAC-TTAGAATGTAACAAAGACAAATATAA
35494192 GTTACAATAA
65 GTTACAATAA
35494202 AAATTTGTAGTTTCTATATT
1 AAATTTGTAGTTTCT-TATT
35494222 GATGTCATCT
Statistics
Matches: 82, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
73 6 0.07
74 69 0.84
75 7 0.09
ACGTcount: A:0.38, C:0.11, G:0.12, T:0.38
Consensus pattern (74 bp):
AAATTTGTAGTTTCTTATTAACTAACGTACAATTTTACTTAGAATGTAACAAAGACAAATATAAG
TTACAATAA
Found at i:35505190 original size:31 final size:31
Alignment explanation
Indices: 35505148--35505305 Score: 185
Period size: 31 Copynumber: 5.1 Consensus size: 31
35505138 TGGCAATATA
* *
35505148 TATATCCATATACGAATCAAATTCGGCAACG
1 TATATCCATATACAAATCAAATTCGGCAATG
* * *
35505179 TATATCTATATACATAT-TAATTCGGCAATG
1 TATATCCATATACAAATCAAATTCGGCAATG
*
35505209 AATATCCATATACAAATCAAATTCGGCAATG
1 TATATCCATATACAAATCAAATTCGGCAATG
* *
35505240 TATAACCATATACAAATCAAATTCGGGAATG
1 TATATCCATATACAAATCAAATTCGGCAATG
* * * *
35505271 TATATCTATA-AAAAATTGAAATTCAGCAATG
1 TATATCCATATACAAA-TCAAATTCGGCAATG
35505302 TATA
1 TATA
35505306 AAACATATAC
Statistics
Matches: 107, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
30 29 0.27
31 78 0.73
ACGTcount: A:0.43, C:0.16, G:0.11, T:0.30
Consensus pattern (31 bp):
TATATCCATATACAAATCAAATTCGGCAATG
Found at i:35505251 original size:61 final size:61
Alignment explanation
Indices: 35505149--35505321 Score: 188
Period size: 61 Copynumber: 2.8 Consensus size: 61
35505139 GGCAATATAT
* * * *
35505149 ATATCCATATACGAATCAAATTCGGCAACGTATATCTATATACATATTAATTCGGCAATGA
1 ATATCCATATACAAATCAAATTCGGCAATGTATAACCATATACATATTAATTCGGCAATGA
* * * *
35505210 ATATCCATATACAAATCAAATTCGGCAATGTATAACCATATACAAATCAAATTCGGGAATGT
1 ATATCCATATACAAATCAAATTCGGCAATGTATAACCATATACATAT-TAATTCGGCAATGA
* * * * *
35505272 ATATCTATA-AAAAATTGAAATTCAGCAATGTATAAAACATATACAT-TTAA
1 ATATCCATATACAAA-TCAAATTCGGCAATGTAT-AACCATATACATATTAA
35505322 ATTCAAAACA
Statistics
Matches: 94, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
61 48 0.51
62 36 0.38
63 10 0.11
ACGTcount: A:0.45, C:0.16, G:0.10, T:0.30
Consensus pattern (61 bp):
ATATCCATATACAAATCAAATTCGGCAATGTATAACCATATACATATTAATTCGGCAATGA
Found at i:35505281 original size:37 final size:31
Alignment explanation
Indices: 35505130--35505316 Score: 164
Period size: 31 Copynumber: 6.0 Consensus size: 31
35505120 CCAATGCTTG
* * *
35505130 AATC-AATTTGGCAATATATATATCCATATACG
1 AATCAAATTCGGCAATGTATA-A-CCATATACA
* * *
35505162 AATCAAATTCGGCAACGTATATCTATATACA
1 AATCAAATTCGGCAATGTATAACCATATACA
* * * *
35505193 TAT-TAATTCGGCAATGAATATCCATATACA
1 AATCAAATTCGGCAATGTATAACCATATACA
35505223 AATCAAATTCGGCAATGTATAACCATATACA
1 AATCAAATTCGGCAATGTATAACCATATACA
* * * *
35505254 AATCAAATTCGGGAATGTATATCTATA-AAA
1 AATCAAATTCGGCAATGTATAACCATATACA
* * *
35505284 AATTGAAATTCAGCAATGTATAAAACATATACA
1 AA-TCAAATTCGGCAATGTAT-AACCATATACA
35505317 TTTAAATTCA
Statistics
Matches: 124, Mismatches: 26, Indels: 9
0.78 0.16 0.06
Matches are distributed among these distances:
30 29 0.23
31 72 0.58
32 8 0.06
33 15 0.12
ACGTcount: A:0.44, C:0.16, G:0.10, T:0.30
Consensus pattern (31 bp):
AATCAAATTCGGCAATGTATAACCATATACA
Found at i:35510701 original size:23 final size:23
Alignment explanation
Indices: 35510627--35510735 Score: 113
Period size: 23 Copynumber: 5.0 Consensus size: 23
35510617 CCTGATCAGT
*
35510627 ATACAACACAT-AAGTGCCTGA-
1 ATACGACACATAAAGTGCCTGAG
* *
35510648 A-ACGACACATGAGGTGCCT--G
1 ATACGACACATAAAGTGCCTGAG
35510668 ATACGACACATAAAGTGCCTGAG
1 ATACGACACATAAAGTGCCTGAG
*
35510691 ATACGATACATAAAGTGCCTGATG
1 ATACGACACATAAAGTGCCTGA-G
* *
35510715 -TTCGACACATAAATTGCCTGA
1 ATACGACACATAAAGTGCCTGA
35510736 TCGGCAAAGC
Statistics
Matches: 74, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
20 9 0.12
21 24 0.32
23 40 0.54
24 1 0.01
ACGTcount: A:0.37, C:0.22, G:0.20, T:0.21
Consensus pattern (23 bp):
ATACGACACATAAAGTGCCTGAG
Found at i:35511805 original size:10 final size:10
Alignment explanation
Indices: 35511790--35511821 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
35511780 TAGTTAATAA
35511790 TAATAATATT
1 TAATAATATT
35511800 TAATAATA--
1 TAATAATATT
35511808 TAATAATATT
1 TAATAATATT
35511818 TAAT
1 TAAT
35511822 TCACAAATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
8 8 0.40
10 12 0.60
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (10 bp):
TAATAATATT
Found at i:35511812 original size:18 final size:19
Alignment explanation
Indices: 35511784--35511821 Score: 69
Period size: 18 Copynumber: 2.1 Consensus size: 19
35511774 ATATATTAGT
35511784 TAATAATAATAATATTTAA
1 TAATAATAATAATATTTAA
35511803 TAAT-ATAATAATATTTAA
1 TAATAATAATAATATTTAA
35511821 T
1 T
35511822 TCACAAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (19 bp):
TAATAATAATAATATTTAA
Found at i:35512014 original size:16 final size:17
Alignment explanation
Indices: 35511978--35512014 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
35511968 TAAGATAATT
35511978 TATAATATTTTAATTAA
1 TATAATATTTTAATTAA
*
35511995 -ATAATATTTTTA-TAA
1 TATAATATTTTAATTAA
35512010 TATAA
1 TATAA
35512015 ATCAAGAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 3 0.17
16 15 0.83
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
TATAATATTTTAATTAA
Found at i:35515556 original size:31 final size:30
Alignment explanation
Indices: 35515514--35515671 Score: 136
Period size: 31 Copynumber: 5.1 Consensus size: 30
35515504 TGGCAATATA
* *
35515514 TATATCCATATACGAATTAAATTCGGCAACG
1 TATATCTATATAC-AATTAAATTCGGCAATG
* * *
35515545 TATATCTATATACAAATCAATTTGGCAATG
1 TATATCTATATACAATTAAATTCGGCAATG
* * *
35515575 AATATCTATATACAAATCAAATTTGGCAATG
1 TATATCTATATAC-AATTAAATTCGGCAATG
* * * *
35515606 TATAACCATACACCAATCAAATTCGGCAATG
1 TATATCTATATA-CAATTAAATTCGGCAATG
* * * *
35515637 TAAATATATAAACAATTGAAATTCAGCAATG
1 TATATCTATATACAATT-AAATTCGGCAATG
35515668 TATA
1 TATA
35515672 AAACATATAC
Statistics
Matches: 102, Mismatches: 22, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
30 29 0.28
31 72 0.71
32 1 0.01
ACGTcount: A:0.44, C:0.16, G:0.10, T:0.30
Consensus pattern (30 bp):
TATATCTATATACAATTAAATTCGGCAATG
Found at i:35515580 original size:30 final size:30
Alignment explanation
Indices: 35515496--35515605 Score: 121
Period size: 30 Copynumber: 3.5 Consensus size: 30
35515486 CCAATGCTCG
* *
35515496 AATCAATTTGGCAATATATATATCCATATACGA
1 AATCAATTTGGCAAT-GA-ATATCTATATAC-A
* * * * *
35515529 ATTAAATTCGGCAACGTATATCTATATACA
1 AATCAATTTGGCAATGAATATCTATATACA
35515559 AATCAATTTGGCAATGAATATCTATATACA
1 AATCAATTTGGCAATGAATATCTATATACA
35515589 AATCAAATTTGGCAATG
1 AATC-AATTTGGCAATG
35515606 TATAACCATA
Statistics
Matches: 64, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
30 30 0.47
31 23 0.36
33 11 0.17
ACGTcount: A:0.42, C:0.15, G:0.11, T:0.33
Consensus pattern (30 bp):
AATCAATTTGGCAATGAATATCTATATACA
Found at i:35515597 original size:61 final size:61
Alignment explanation
Indices: 35515496--35515672 Score: 167
Period size: 61 Copynumber: 2.9 Consensus size: 61
35515486 CCAATGCTCG
* * * * * * * *
35515496 AATCAATTTGGCAATATATATATCCATATACGAATTAAATTCGGCAACGTATATCTATATACA
1 AATCAATTTGGCAAT-GA-ATATCTATATACAAATCAAATTCGGCAATGTATAACCATACACA
* *
35515559 AATCAATTTGGCAATGAATATCTATATACAAATCAAATTTGGCAATGTATAACCATACACC
1 AATCAATTTGGCAATGAATATCTATATACAAATCAAATTCGGCAATGTATAACCATACACA
* * * * * *
35515620 AATCAAATTCGGCAATGTAA-ATATATAAACAATTGAAATTCAGCAATGTATAA
1 AATC-AATTTGGCAATG-AATATCTATATACAAATCAAATTCGGCAATGTATAA
35515673 AACATATACA
Statistics
Matches: 95, Mismatches: 17, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
61 39 0.41
62 39 0.41
63 17 0.18
ACGTcount: A:0.44, C:0.15, G:0.10, T:0.31
Consensus pattern (61 bp):
AATCAATTTGGCAATGAATATCTATATACAAATCAAATTCGGCAATGTATAACCATACACA
Found at i:35515690 original size:31 final size:31
Alignment explanation
Indices: 35515624--35515692 Score: 77
Period size: 31 Copynumber: 2.2 Consensus size: 31
35515614 TACACCAATC
* * *
35515624 AAATTCGGCAATGTAAATATATAAACAATTG
1 AAATTCAGCAATGTAAAAACATAAACAATTG
* *
35515655 AAATTCAGCAATGTATAAAACATATAC-ATTT
1 AAATTCAGCAATGTA-AAAACATAAACAATTG
35515686 AAATTCA
1 AAATTCA
35515693 AAAACATTTA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
31 24 0.75
32 8 0.25
ACGTcount: A:0.49, C:0.12, G:0.09, T:0.30
Consensus pattern (31 bp):
AAATTCAGCAATGTAAAAACATAAACAATTG
Found at i:35520579 original size:22 final size:22
Alignment explanation
Indices: 35520546--35520590 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 22
35520536 ATTGTTCTAA
35520546 TATTTGATTTA-TTATTCTATTT
1 TATTTGATTTATTTATT-TATTT
35520568 TATTT-ATCTTATTTATTTATTT
1 TATTTGAT-TTATTTATTTATTT
35520590 T
1 T
35520591 GACTTGGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
21 2 0.10
22 14 0.67
23 5 0.24
ACGTcount: A:0.22, C:0.04, G:0.02, T:0.71
Consensus pattern (22 bp):
TATTTGATTTATTTATTTATTT
Found at i:35532697 original size:25 final size:25
Alignment explanation
Indices: 35532651--35532699 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
35532641 ATTATATATT
* * * *
35532651 AAATATATTTTTTTTATTTTTAATC
1 AAATATATATTATATATATTTAATC
35532676 AAATATATATTATATATATTTAAT
1 AAATATATATTATATATATTTAAT
35532700 ATATATTTAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (25 bp):
AAATATATATTATATATATTTAATC
Found at i:35563490 original size:19 final size:19
Alignment explanation
Indices: 35563462--35563498 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
35563452 CCACTTTCAA
35563462 ATTTTACTAAAATTTAAGG
1 ATTTTACTAAAATTTAAGG
*
35563481 ATTTTTCTAAAATTTAAG
1 ATTTTACTAAAATTTAAG
35563499 TGGAAATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.41, C:0.05, G:0.08, T:0.46
Consensus pattern (19 bp):
ATTTTACTAAAATTTAAGG
Found at i:35567757 original size:21 final size:21
Alignment explanation
Indices: 35567720--35567776 Score: 84
Period size: 20 Copynumber: 2.8 Consensus size: 21
35567710 TTTAAAAATA
35567720 TTTTAAAATACTTTTTTT-AT
1 TTTTAAAATACTTTTTTTAAT
35567740 TTTTAAAATACTTTTTTTAAT
1 TTTTAAAATACTTTTTTTAAT
35567761 TTTCT-AAATA-TTTTTT
1 TTT-TAAAATACTTTTTT
35567777 GGTGTTTATT
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
20 24 0.69
21 10 0.29
22 1 0.03
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (21 bp):
TTTTAAAATACTTTTTTTAAT
Found at i:35567805 original size:5 final size:5
Alignment explanation
Indices: 35567795--35567830 Score: 63
Period size: 5 Copynumber: 7.2 Consensus size: 5
35567785 TTAAAAAAAT
*
35567795 GGGCC GGGCC GGGCC GGGCC GGGCC AGGCC GGGCC G
1 GGGCC GGGCC GGGCC GGGCC GGGCC GGGCC GGGCC G
35567831 AGCCCGGGCT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.03, C:0.39, G:0.58, T:0.00
Consensus pattern (5 bp):
GGGCC
Found at i:35568187 original size:18 final size:18
Alignment explanation
Indices: 35568132--35568190 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 18
35568122 GAATTTTAAA
*
35568132 AAATCTTTATATATTCTTT
1 AAATTTTTATATATT-TTT
* * *
35568151 AGAATTTTTTTAGAATTTT
1 A-AATTTTTATATATTTTT
35568170 AAATTTTTATATATTTTT
1 AAATTTTTATATATTTTT
35568188 AAA
1 AAA
35568191 AATTATGAAA
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
18 17 0.53
19 5 0.16
20 10 0.31
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.58
Consensus pattern (18 bp):
AAATTTTTATATATTTTT
Found at i:35568239 original size:19 final size:20
Alignment explanation
Indices: 35568207--35568245 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
35568197 GAAAATTTGG
35568207 AAATTTTTATAAA-TATTTT
1 AAATTTTTATAAATTATTTT
35568226 AAATTTTTGA-AAATTATTTT
1 AAATTTTT-ATAAATTATTTT
35568246 GTAATTTTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (20 bp):
AAATTTTTATAAATTATTTT
Found at i:35568245 original size:20 final size:19
Alignment explanation
Indices: 35568165--35568233 Score: 63
Period size: 19 Copynumber: 3.7 Consensus size: 19
35568155 TTTTTTTAGA
*
35568165 ATTTTAAATTTTTATATAT
1 ATTTTAAATTTTTATAAAT
**
35568184 -TTTTAAA-AATTATGAAA-
1 ATTTTAAATTTTTAT-AAAT
*
35568201 ATTTGGAAATTTTTATAAAT
1 ATTT-TAAATTTTTATAAAT
35568221 ATTTTAAATTTTT
1 ATTTTAAATTTTT
35568234 GAAAATTATT
Statistics
Matches: 38, Mismatches: 7, Indels: 10
0.69 0.13 0.18
Matches are distributed among these distances:
17 4 0.11
18 12 0.32
19 14 0.37
20 8 0.21
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.55
Consensus pattern (19 bp):
ATTTTAAATTTTTATAAAT
Found at i:35570450 original size:3 final size:3
Alignment explanation
Indices: 35570444--35570479 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
35570434 ATAAGTTATT
*
35570444 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ACA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
35570480 TTATTATTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:35570502 original size:4 final size:4
Alignment explanation
Indices: 35570493--35570541 Score: 53
Period size: 4 Copynumber: 12.2 Consensus size: 4
35570483 TTATTATATT
* * * * *
35570493 GATA GATA GATA CATA GATA CATA GATA CATA GATA CATA GGTA GATA
1 GATA GATA GATA GATA GATA GATA GATA GATA GATA GATA GATA GATA
35570541 G
1 G
35570542 TCATTAAAAC
Statistics
Matches: 35, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
4 35 1.00
ACGTcount: A:0.47, C:0.08, G:0.20, T:0.24
Consensus pattern (4 bp):
GATA
Found at i:35570504 original size:8 final size:8
Alignment explanation
Indices: 35570493--35570533 Score: 73
Period size: 8 Copynumber: 5.1 Consensus size: 8
35570483 TTATTATATT
*
35570493 GATAGATA
1 GATACATA
35570501 GATACATA
1 GATACATA
35570509 GATACATA
1 GATACATA
35570517 GATACATA
1 GATACATA
35570525 GATACATA
1 GATACATA
35570533 G
1 G
35570534 GTAGATAGTC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
8 32 1.00
ACGTcount: A:0.49, C:0.10, G:0.17, T:0.24
Consensus pattern (8 bp):
GATACATA
Found at i:35576155 original size:18 final size:17
Alignment explanation
Indices: 35576129--35576167 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
35576119 ATTTTCCTTC
35576129 CACATTC-AATATTAATT
1 CACATTCAAATA-TAATT
35576146 CACATATCAAATATAATT
1 CACAT-TCAAATATAATT
35576164 CACA
1 CACA
35576168 ATTTATAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.25
18 11 0.55
19 4 0.20
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (17 bp):
CACATTCAAATATAATT
Found at i:35583264 original size:23 final size:23
Alignment explanation
Indices: 35583169--35583267 Score: 135
Period size: 23 Copynumber: 4.3 Consensus size: 23
35583159 ATAAGTGCCA
*
35583169 CACTGGTATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
35583192 CATTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* * *
35583215 CATTGATATGTAGCTGTAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
35583238 CACTGAAATGTAGCCGAAGCTAA
1 CACTGATATGTAGCCGAAGCTAC
35583261 CACTGAT
1 CACTGAT
35583268 CAATAACACT
Statistics
Matches: 66, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 66 1.00
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.25
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:35590047 original size:156 final size:155
Alignment explanation
Indices: 35589872--35590185 Score: 567
Period size: 156 Copynumber: 2.0 Consensus size: 155
35589862 TTTAATTGTT
*
35589872 AATATTTTTTATGGCTTTTTAGAAACTTTTAATTTATATATATTTGAATTTTTTTAGACTTATTA
1 AATATTTTTTATAGCTTTTTAGAAACTTTTAATTTATATATATTTGAATTTTTTTAGACTTATTA
35589937 AAATTTTATATATTTAAAAAAATTCAAATGTTGGTATGAAATGCCACATCATCTAC-AAAAAAAG
66 AAATTTTATATATTT-AAAAAATTCAAATGTTGGTATGAAATGCCACATCATCTACAAAAAAAAG
35590001 ACTAAACTATTTGAACAAAAATTCAA
130 ACTAAACTATTTGAACAAAAATTCAA
* *
35590027 AATATTTTTTTATAGCTTTTTAGAAACTTTTAATTTATATATATTTGATTTTTTTTAGATTTATT
1 AATA-TTTTTTATAGCTTTTTAGAAACTTTTAATTTATATATATTTGAATTTTTTTAGACTTATT
35590092 AAAATTTTATATATTTAAAAAATTCAAATGTTGGTATGAAATGCCACATCATCTACAAAAAAAAA
65 AAAATTTTATATATTTAAAAAATTCAAATGTTGGTATGAAATGCCACATCATCTAC-AAAAAAAA
35590157 GACTAAACTATTTGAACAAAAATTCAA
129 GACTAAACTATTTGAACAAAAATTCAA
35590184 AA
1 AA
35590186 AGCCAGTCGA
Statistics
Matches: 153, Mismatches: 3, Indels: 4
0.96 0.02 0.03
Matches are distributed among these distances:
155 44 0.29
156 73 0.48
157 36 0.24
ACGTcount: A:0.42, C:0.09, G:0.07, T:0.42
Consensus pattern (155 bp):
AATATTTTTTATAGCTTTTTAGAAACTTTTAATTTATATATATTTGAATTTTTTTAGACTTATTA
AAATTTTATATATTTAAAAAATTCAAATGTTGGTATGAAATGCCACATCATCTACAAAAAAAAGA
CTAAACTATTTGAACAAAAATTCAA
Found at i:35590325 original size:5 final size:5
Alignment explanation
Indices: 35590315--35590351 Score: 74
Period size: 5 Copynumber: 7.4 Consensus size: 5
35590305 TTGGCTTCAA
35590315 CAACC CAACC CAACC CAACC CAACC CAACC CAACC CA
1 CAACC CAACC CAACC CAACC CAACC CAACC CAACC CA
35590352 GCTCAGCTCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.41, C:0.59, G:0.00, T:0.00
Consensus pattern (5 bp):
CAACC
Found at i:35615149 original size:21 final size:21
Alignment explanation
Indices: 35615108--35615149 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
35615098 CATAAAAACT
*
35615108 TCCAAAAAGTTTTCCACCATG
1 TCCAAAAAGTTTGCCACCATG
*
35615129 TCCAAAAA-TATTGCCATCATG
1 TCCAAAAAGT-TTGCCACCATG
35615150 CAACGTTGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 1 0.06
21 17 0.94
ACGTcount: A:0.36, C:0.26, G:0.10, T:0.29
Consensus pattern (21 bp):
TCCAAAAAGTTTGCCACCATG
Found at i:35624405 original size:7 final size:7
Alignment explanation
Indices: 35624371--35624417 Score: 51
Period size: 7 Copynumber: 6.6 Consensus size: 7
35624361 GTCATGTACC
35624371 TTTTATT
1 TTTTATT
*
35624378 CTTTATAT
1 TTTTAT-T
35624386 TTTT-TT
1 TTTTATT
*
35624392 GTTTATT
1 TTTTATT
35624399 TTTTATT
1 TTTTATT
35624406 TGTTTATT
1 T-TTTATT
35624414 TTTT
1 TTTT
35624418 TGTGTTTTCA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
6 4 0.12
7 18 0.55
8 11 0.33
ACGTcount: A:0.13, C:0.02, G:0.04, T:0.81
Consensus pattern (7 bp):
TTTTATT
Found at i:35624407 original size:15 final size:14
Alignment explanation
Indices: 35624379--35624424 Score: 65
Period size: 14 Copynumber: 3.2 Consensus size: 14
35624369 CCTTTTATTC
*
35624379 TTTATATTTTTTTG
1 TTTATTTTTTTTTG
35624393 TTTATTTTTTATTTG
1 TTTATTTTTT-TTTG
*
35624408 TTTATTTTTTTGTG
1 TTTATTTTTTTTTG
35624422 TTT
1 TTT
35624425 TCATTTATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
14 15 0.52
15 14 0.48
ACGTcount: A:0.11, C:0.00, G:0.09, T:0.80
Consensus pattern (14 bp):
TTTATTTTTTTTTG
Found at i:35624425 original size:25 final size:26
Alignment explanation
Indices: 35624383--35624443 Score: 63
Period size: 25 Copynumber: 2.3 Consensus size: 26
35624373 TTATTCTTTA
* *
35624383 TATTTTTTTGTTTATTTTTTATTTGT-T
1 TATTTTTTTG-TTA-TTTTCATTTATAT
*
35624410 TATTTTTTTG-TGTTTTCATTTATAT
1 TATTTTTTTGTTATTTTCATTTATAT
35624435 TATTTTTTT
1 TATTTTTTT
35624444 ATCTTGCTCG
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
24 9 0.30
25 11 0.37
27 10 0.33
ACGTcount: A:0.13, C:0.02, G:0.07, T:0.79
Consensus pattern (26 bp):
TATTTTTTTGTTATTTTCATTTATAT
Found at i:35624567 original size:15 final size:15
Alignment explanation
Indices: 35624547--35624577 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
35624537 TATGCCATTA
35624547 TTGTATTTATTATTG
1 TTGTATTTATTATTG
*
35624562 TTGTATTTGTTATTG
1 TTGTATTTATTATTG
35624577 T
1 T
35624578 GACATTCATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.16, C:0.00, G:0.16, T:0.68
Consensus pattern (15 bp):
TTGTATTTATTATTG
Found at i:35631783 original size:23 final size:23
Alignment explanation
Indices: 35631757--35631801 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
35631747 ATAATTGTAC
35631757 ATAAATTCATACATTCTTTTGTT
1 ATAAATTCATACATTCTTTTGTT
35631780 ATAAATTCATACATTCTTTTGT
1 ATAAATTCATACATTCTTTTGT
35631802 AACCATATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.31, C:0.13, G:0.04, T:0.51
Consensus pattern (23 bp):
ATAAATTCATACATTCTTTTGTT
Found at i:35633262 original size:21 final size:19
Alignment explanation
Indices: 35633210--35633263 Score: 54
Period size: 21 Copynumber: 2.6 Consensus size: 19
35633200 CATATCGTTA
35633210 TTTAAAATTATTATTAACATG
1 TTTAAAA-T-TTATTAACATG
* *
35633231 TTTAGAGTTTATTAACATTG
1 TTTAAAATTTATTAACA-TG
35633251 TTTTAAAATTTAT
1 -TTTAAAATTTAT
35633264 CCTTTTTATT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
19 9 0.33
20 3 0.11
21 15 0.56
ACGTcount: A:0.37, C:0.04, G:0.07, T:0.52
Consensus pattern (19 bp):
TTTAAAATTTATTAACATG
Found at i:35633789 original size:19 final size:16
Alignment explanation
Indices: 35633751--35633780 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
35633741 ATGTTTCAAC
35633751 TTAA-AAATGTTGTTA
1 TTAATAAATGTTGTTA
35633766 TTAATAAATGTTGTT
1 TTAATAAATGTTGTT
35633781 GTATTTAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.37, C:0.00, G:0.13, T:0.50
Consensus pattern (16 bp):
TTAATAAATGTTGTTA
Found at i:35638513 original size:25 final size:26
Alignment explanation
Indices: 35638466--35638514 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
35638456 CAGAATTTGT
35638466 TTGTTCTTGTAATACTTTATTCTTCA
1 TTGTTCTTGTAATACTTTATTCTTCA
35638492 TTGTTCTTG-AATATCTTT-TTCTT
1 TTGTTCTTGTAATA-CTTTATTCTT
35638515 TTCAGGACAC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 9 0.41
26 13 0.59
ACGTcount: A:0.16, C:0.14, G:0.08, T:0.61
Consensus pattern (26 bp):
TTGTTCTTGTAATACTTTATTCTTCA
Found at i:35639556 original size:44 final size:44
Alignment explanation
Indices: 35639384--35642614 Score: 2273
Period size: 44 Copynumber: 72.8 Consensus size: 44
35639374 AAAAAGTAGA
* * * * *
35639384 AGATATTGTCTTCATAAATTGGCGTGAAGTAGATCGAAGATAGG
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGAAAGC
* * * * *
35639428 AGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGATTTA-C
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGA--AAGC
* * * * *
35639474 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAATAAAGC
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGAAAGC
* * * *
35639519 AGATTTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGC
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGAAAGC
* * * *
35639563 AGATCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGATA-C
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGAAAGC
* * * * * * * *
35639606 ATATATTGTCTTCCCATACTGGTGGCGAAGTAGATTGAAGAAAGT
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGAAAGC
* * * *
35639651 AGATCTTGTCTTCATGTATTGGGGTGAAGTAGATCGAAGATAGC
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGAAAGC
* * * *
35639695 AGATCTTGTCTTCCTATACTGGTG-GCAAAGTATATCGAAGAAAGT
1 AGATCTTGTCTTCCTATATTGGCGTG--AAGTAGATCGAAGAAAGC
* * * * *
35639740 AGATCTTGTCTTCATGTATTAGCGTGAAGTAGATCGAAGATAGA
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGAAAGC
* ** * * *
35639784 AGATCCTGTCTTCCTATATTAGTAG-GAAGTGGATCGAAG-ATGA
1 AGATCTTGTCTTCCTATATT-GGCGTGAAGTAGATCGAAGAAAGC
* * * * *
35639827 AGATCTTTTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGC
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGAAAGC
** * *
35639872 AGATCTTGTCTTTATGTATTGGCGTGAAGTAGATCGAAGATAGC
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGAAAGC
* * * *
35639916 AAATCTTGTCTTCATGA-ATTGGTGTGAAGTAGATCGAAGATAGC
1 AGATCTTGTCTTCCT-ATATTGGCGTGAAGTAGATCGAAGAAAGC
* * * * *
35639960 AGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGATA-C
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGAAAGC
* * *
35640004 AAATCTTATCTT-CTCATATTGGCAGTGAAGTAGATCGTAGAAAGC
1 AGATCTTGTCTTCCT-ATATTGGC-GTGAAGTAGATCGAAGAAAGC
* * * *
35640049 AGATCTTGTCTTCCTATATTGGTAG-GAAGTGGATTGAAG-ACGC
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGAAAGC
* * * * * *
35640092 AGATCTTATCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAAC
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGAAAGC
* * * * *
35640137 AGATCTTGTCTTCATGTATTAGCGTGAAGTAGATCGAAGGTAA-T
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAA-GAAAGC
* * * *
35640181 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGA
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGAAAGC
* * * * *
35640225 AGATCTTGTTTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGC
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGAAAGC
* * * * *
35640270 AGATCTTGTCTTCATGTATTGGCATTAAGTAGATCGAAGATAGC
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGAAAGC
** * * * *
35640314 AGATCTTGTCTTTATGTATTGGCGTGGAGTAGATCGAAGATAGT
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGAAAGC
* * * *
35640358 AGATCATGTCTTCCTATATTGGTAGTGAAGTGGATCGAAG-ATGC
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGAAAGC
* * * *
35640402 AGATCTTATCTTCCCATATTAGCGGCGAAGTAGATCGAAGAAAGC
1 AGATCTTGTCTTCCTATATTGGC-GTGAAGTAGATCGAAGAAAGC
* * *
35640447 AGATCTTTTCTTCATGTATTGGCGTGAAGTAGATCGAA-AATAGC
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGAA-AGC
* * * * * *
35640491 AGATCCTGTCTTTCTATATTGGTAG-GAAGTGGATTGAAG-ATGC
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGAAAGC
* * * * * * *
35640534 AGACCTAGTATTCCCATACTGGTGGTGAAGTAGATCGAAGAAAGT
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGAAAGC
* * * * *
35640579 AGATCTTATCTTCATGTATTAGCGTGAAGTAGATCGAAGATAGC
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGAAAGC
* * * * *
35640623 AGATCTTGTCTTCATGTATTGACGTGAAGTAGATCGAAGATAGT
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGAAAGC
* * * * *
35640667 AGATCTTGTCTCCCTATATTGGTAGCGAAGTGGATCGAAG-ATGC
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGAAAGC
* *
35640711 AGATCTTGTCTTCCCATATTGGCGGCGAAGTAGATCGAAGAAAGC
1 AGATCTTGTCTTCCTATATTGGC-GTGAAGTAGATCGAAGAAAGC
* * * *
35640756 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAACATAGC
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGAAAGC
* * * *
35640800 AGATCCTGTCTTTCTATATTGGTAG-GAAGT-GAATCGAAG-ATGC
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAG-ATCGAAGAAAGC
* * *
35640843 AGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAGC
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGAAAGC
* * * * *
35640888 AGATATTGTCTTCATGTATTAGCGTGAAGTAGATCGAAGATAGC
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGAAAGC
* * * *
35640932 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGT
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGAAAGC
* * * * *
35640976 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGT
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGAAAGC
** *** ** * * * * * * * *
35641021 AGATCGAAGAAAGT-AGATCTTGTCTTCATGTATTG-GCGTGAAGTAGATCGA
1 AGATC-TTG-TCTTCCTATATTGGCGTGAAGTA--GATC--GAAG-A-A-AGC
* * * **** * * * *
35641072 AGATAGC-AGATCCTGTCTTCCTATATTGGT-AGGAAG-TGGATCG-AAG-
1 AGAT--CTTG-T-CT-TCCT-ATATTGGCGTGAAGTAGATCGA-AGAAAGC
** * * * * *
35641118 ATGTAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAGT
1 A-G-ATCT-TG-TCTTCCTATATTGG-CGTGAAGTAGATCGAAGAAAGC
* * ** * *
35641167 AGATCTTGTCTTCATGTATTGGTATGAAGTAGATCGAATATAGC
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGAAAGC
* * ** * *
35641211 AGATCCTGTCTTCCTATATTGGTAGCAAAGTGGATCGAAGATA-C
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGAAAGC
* *
35641255 AGATCTTGTCTTCCTATATTAGCGGCGAAGTAGATCGAAGAAAGC
1 AGATCTTGTCTTCCTATATTGGC-GTGAAGTAGATCGAAGAAAGC
* * * *
35641300 ATATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGC
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGAAAGC
* * * * *
35641344 AGATCATGTCTTCCTATATTGGTAG-GAAGTGGATTGAAG-ACGC
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGAAAGC
* * * * * *
35641387 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCAAAGAAAGT
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGAAAGC
* * * * *
35641432 AGATCTTGGCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGC
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGAAAGC
* * * * *
35641476 AGATCTTGTCTTCATGTATTGGCGTGGAGTAGATCGAAGATAGT
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGAAAGC
* * * * *
35641520 AGATCCTATCTTCCTATATTGGTAGTGAAGTGGATCGAA-AATGC
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGAAAGC
* * *
35641564 AGATCTTATCTTCCCATATTGGCGGCGAAGTAGATCGAAGAAAGC
1 AGATCTTGTCTTCCTATATTGGC-GTGAAGTAGATCGAAGAAAGC
* * * *
35641609 AGATCTTTTCTTCATGTATTGGCATGAAGTAGATCGAA-AATAGC
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGAA-AGC
* * * * *
35641653 AGATCTTGTCTTTCTATATTGGTAG-GAAGTGGATTGAAG-ATGC
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGAAAGC
** * * *
35641696 AGATCTTGTCTTCCCGTACTGGTGGCGAAGTAGATCGAAGAAAGC
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGAAAGC
* * * * * *
35641741 AGATCTTATCTTCATGTATTAGCGTGAAGTAGATCGAAGATAGT
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGAAAGC
* * * * * ** *
35641785 AGATCTTGTCTTCATGTATTGACGTAAAGTAGATCGAATATGGT
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGAAAGC
* * * * * *
35641829 AGATCCTGTCTCCCTATATTGGTAGCGAAGTGGATCGAAG-ATGC
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGAAAGC
* * *
35641873 ATATCTTGTCTTCCCATATTGGCGGCGAAGTAGATCGAAGAAAGC
1 AGATCTTGTCTTCCTATATTGGC-GTGAAGTAGATCGAAGAAAGC
* * * * * *
35641918 AGATCTTGTCTTCATGTATTGTCGTGAAGTAGATCAAACATAGC
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGAAAGC
* * * *
35641962 AGATCCTGTCTTTCTATATTGGTAG-GAAGTAGATCGAAGATA-C
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGAAAGC
* * * *
35642005 AGATCTTGTCTTTCC-ATACTGGTGGCGAAGTAGATCGACGAAAGC
1 AGATCTTGTC-TTCCTATATTGG-CGTGAAGTAGATCGAAGAAAGC
* * * * *
35642050 AGATCTTGTCTTCATGTATTAGCGTAAAGTAGATCGAAGATAGC
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGAAAGC
* * * * *
35642094 AGATCTTGTCTTCATGTATTGGCCTGAAGTAGATCGAAGATAGT
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGAAAGC
* * * * *
35642138 AGATCTTGTCTTCCTATACTGGTGGCGAAGTAGATTGAAGAAAGT
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGAAAGC
* * *
35642183 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGC
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGAAAGC
* * * *
35642227 AGATCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAG-ATGC
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGAAAGC
* * * * *
35642270 AAATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAGT
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGAAAGC
* * * * *
35642315 AGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAATATAGC
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGAAAGC
* * ** * * *
35642359 AGATCCTGTCTTCCTATATTGGTAGCAAAGTGGATCGAAG-ATGT
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGAAAGC
* * *
35642403 AGATCTTGTCTTCCCATATTGGCGGCGAAGTAGATCGAAGAAAGT
1 AGATCTTGTCTTCCTATATTGGC-GTGAAGTAGATCGAAGAAAGC
* * * *
35642448 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGATGATAGC
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGAAAGC
* * * *
35642492 AGATCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAG-ACGC
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGAAAGC
* * * *
35642535 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGC
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGAAAGC
* * * *
35642580 AGATTTTGGCTTCATGTATTGGCGTGAAGTAGATC
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATC
35642615 TTGTCTTCCT
Statistics
Matches: 2496, Mismatches: 590, Indels: 202
0.76 0.18 0.06
Matches are distributed among these distances:
42 1 0.00
43 223 0.09
44 1555 0.62
45 613 0.25
46 51 0.02
47 15 0.01
48 14 0.01
49 2 0.00
50 3 0.00
51 9 0.00
52 1 0.00
53 2 0.00
54 3 0.00
55 4 0.00
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (44 bp):
AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGAAAGC
Found at i:35639924 original size:265 final size:266
Alignment explanation
Indices: 35639384--35642852 Score: 2948
Period size: 265 Copynumber: 13.1 Consensus size: 266
35639374 AAAAAGTAGA
* ** * *
35639384 AGATATTGTCTTCATAAATTGGCGTGAAGTAGATCGAAGATAGGAGATCCTGTCTTCCTATATTG
1 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTG
* * * * * * *
35639449 GTAGCGAAGTGGATCGAAGATTTA-CAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAA
66 GTGGCGAAGTAGATCGAAGA--AAGCAGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAA
* * * * *
35639513 TAAAGCAGATTTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCC
128 GAAAGCAGATCTTGTCTTCATATATTGGTAGTGAAGTAGATCGAAGAT-GCAGATCTTGTCTTCC
* * * * ** * * *
35639577 TATATTGGTAG-GAAGTGGATCGAAGATA-CATATATTGTCTTCCCATACTGGTGGCGAAGTAGA
192 TATATTGGTAGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATATATTGG-CGTGAAGTAGA
* * *
35639640 TTGAAGAAAGT
256 TCGAAGATAGC
* *
35639651 AGATCTTGTCTTCATGTATTGGGGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATACTG
1 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTG
* * * * * * *
35639716 GTGGCAAAGTATATCGAAGAAAGTAGATCTTGTCTTCATGTATTAGCGTGAAGTAGATCGAAGAT
66 GTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGAA
* * * * * * * *
35639781 AGAAGATCCTGTCTTCCTATATTAGTAG-GAAGTGGATCGAAGATGAAGATCTTTTCTTCCCATA
131 AGCAGATCTTGTCTTCATATATTGGTAGTGAAGTAGATCGAAGATGCAGATCTTGTCTTCCTATA
* * * * *
35639845 CTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTTATGTATTGGCGTGAAGTAGATCGAA
196 TTGGTAGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATATATTGGCGTGAAGTAGATCGAA
35639910 GATAGC
261 GATAGC
* * * *
35639916 AAATCTTGTCTTCATGAATTGGTGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTG
1 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTG
* * * * * *
35639981 GTAGCGAAGTGGATCGAAGATA-CAAATCTTATCTT-CTCATATTGGCAGTGAAGTAGATCGTAG
66 GTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCT-ATATTGGC-GTGAAGTAGATCGAAG
* * * * * *
35640044 AAAGCAGATCTTGTCTTCCTATATTGGTAG-GAAGTGGATTGAAGACGCAGATCTTATCTTCCCA
129 AAAGCAGATCTTGTCTTCATATATTGGTAGTGAAGTAGATCGAAGATGCAGATCTTGTCTTCCTA
* * * * * *
35640108 TACTGGTGGCGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTAGCGTGAAGTAGATCG
194 TATTGGTAGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATATATTGGCGTGAAGTAGATCG
* **
35640173 AAGGTAAT
259 AAGATAGC
* * * *
35640181 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGAAGATCTTGTTTTCCCATACTG
1 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTG
* * * * *
35640246 GTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCATTAAGTAGATCGAAGAT
66 GTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGAA
* * * * * *
35640311 AGCAGATCTTGTCTTTATGTATTGG-CGTGGAGTAGATCGAAGATAGTAGATCATGTCTTCCTAT
131 AGCAGATCTTGTCTTCATATATTGGTAGTGAAGTAGATCGAAGAT-GCAGATCTTGTCTTCCTAT
* * * ** * *
35640375 ATTGGTAGTGAAGTGGATCGAAG-ATGCAGATCTTATCTTCCCATATTAGCGGCGAAGTAGATCG
195 ATTGGTAGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATATATTGGC-GTGAAGTAGATCG
*
35640439 AAGAAAGC
259 AAGATAGC
* * * *
35640447 AGATCTTTTCTTCATGTATTGGCGTGAAGTAGATCGAAAATAGCAGATCCTGTCTTTCTATATTG
1 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTG
* * * * * * * * * *
35640512 GTAG-GAAGTGGATTGAAG-ATGCAGACCTAGTATTCCCATACTGGTGGTGAAGTAGATCGAAGA
66 GTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGA
* * * * * * *
35640575 AAGTAGATCTTATCTTCATGTATTAG-CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATG
130 AAGCAGATCTTGTCTTCATATATTGGTAGTGAAGTAGATCGAAGAT-GCAGATCTTGTCTTCCTA
* * * * * * *
35640639 TATT-G-ACGTGAAGTAGATCGAAGATAGTAGATCTTGTCTCCCTATATTGGTAGCGAAGTGGAT
194 TATTGGTA-GTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATATATTGG-CGTGAAGTAGAT
35640702 CGAAGAT-GC
257 CGAAGATAGC
*** * * * *
35640711 AGATCTTGTCTTCCCATATTGGCGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATT
1 AGATCTTGTCTTCATGTATTGGC-GTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATT
* * * * * * *
35640776 GG-CGTGAAGTAGATCGAACATAGCAGATCCTGTCTTTCTATATTGGTAG-GAAGT-GAATCGAA
65 GGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGG-CGTGAAGTAG-ATCGAA
* ** * * * * *
35640838 G-ATGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAGCAGATATTGTCTTCA
128 GAAAGCAGATCTTGTCTTCATATATTGGTAGTGAAGTAGATCGAAG-ATGCAGATCTTGTCTTCC
* * * * *
35640902 TGTATTAG-CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGAT
192 TATATTGGTAGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATATATTGGCGTGAAGTAGAT
*
35640966 CGAAGATAGT
257 CGAAGATAGC
* * * * *
35640976 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGTAGATCGAAGAAAGTAGATCT
1 AGATCTTGTCTT--C--A-T-GT-----A-TTG-GCG-TG-AAGTAGATCGAAGATAGCAGATCT
* * * * * * *
35641041 TGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAG-
51 TGTCTTCCTATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGG-CGT
* * * ** * * * *
35641104 GAAGTGGATCGAAG-ATGTAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAGTA
115 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATATATTGGTAGTGAAGTAGATCGAAG-ATGCA
* * * * * *
35641168 GATCTTGTCTTCATGTATTGGTA-TGAAGTAGATCGAATATAGCAGATCCTGTCTTCCTATATTG
179 GATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATATATTG
* ** *
35641232 GTAGCAAAGTGGATCGAAGATA-C
244 G-CGTGAAGTAGATCGAAGATAGC
* * * * * * * *
35641255 AGATCTTGTCTTCCTATATTAGCGGCGAAGTAGATCGAAGAAAGCATATCTTGTCTTCATGTATT
1 AGATCTTGTCTTCATGTATTGGC-GTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATT
* * * * * * *
35641320 GG-CGTGAAGTAGATCGAAGATAGCAGATCATGTCTTCCTATATTGGTAG-GAAGTGGATTGAAG
65 GGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAG
* ** * * * * * * * *
35641383 -ACGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCAAAGAAAGTAGATCTTGGCTTCAT
129 AAAGCAGATCTTGTCTTCATATATTGGTAGTGAAGTAGATCGAAG-ATGCAGATCTTGTCTTCCT
* * * * * *
35641447 GTATTGG-CGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTATTGGCGTGGAGTAGATC
193 ATATTGGTAGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATATATTGGCGTGAAGTAGATC
*
35641511 GAAGATAGT
258 GAAGATAGC
* * * * * * * * *
35641520 AGATCCTATCTTCCTATATTGGTAGTGAAGTGGATCGAAAAT-GCAGATCTTATCTTCCCATATT
1 AGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATT
* * * * *
35641584 GGCGGCGAAGTAGATCGAAGAAAGCAGATCTTTTCTTCATGTATTGGCATGAAGTAGATCGAA-A
65 GGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGA
* * *
35641648 ATAGCAGATCTTGTCTTTC-TATATTGGTAG-GAAGTGGATTGAAGATGCAGATCTTGTCTTCCC
130 A-AGCAGATCTTGTC-TTCATATATTGGTAGTGAAGTAGATCGAAGATGCAGATCTTGTCTTCCT
* * * * * * *
35641711 GTACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTATTAGCGTGAAGTAGATC
193 ATATTGGTAGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATATATTGGCGTGAAGTAGATC
*
35641776 GAAGATAGT
258 GAAGATAGC
* * * * * * *
35641785 AGATCTTGTCTTCATGTATTGACGTAAAGTAGATCGAATATGGTAGATCCTGTCTCCCTATATTG
1 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTG
* * * * * *
35641850 GTAGCGAAGTGGATCGAAG-ATGCATATCTTGTCTTCCCATATTGGCGGCGAAGTAGATCGAAGA
66 GTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGC-GTGAAGTAGATCGAAGA
* * * * * *
35641914 AAGCAGATCTTGTCTTCATGTATT-GTCGTGAAGTAGATCAAACATAGCAGATCCTGTCTTTCTA
130 AAGCAGATCTTGTCTTCATATATTGGTAGTGAAGTAGATCGAAGAT-GCAGATCTTGTCTTCCTA
* **
35641978 TATTGGTAG-GAAGTAGATCGAAGATA-CAGATCTTGTCTTTCCATACTGGTGGC--GAAGTAGA
194 TATTGGTAGTGAAGTAGATCGAAGAAAGCAGATCTTGTC-TT-CATA-TATTGGCGTGAAGTAGA
* *
35642039 TCGACGAAAGC
256 TCGAAGATAGC
* * * *
35642050 AGATCTTGTCTTCATGTATTAGCGTAAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATT-
1 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTG
* * * * * * *
35642114 G-GCCTGAAGTAGATCGAAGATAGTAGATCTTGTCTTCCTATACTGGTGGCGAAGTAGATTGAAG
66 GTGGC-GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAG
* * * *
35642178 AAAGTAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCT
129 AAAGCAGATCTTGTCTTCATATATTGGTAGTGAAGTAGATCGAAGAT-GCAGATCTTGTCTTCCT
* * * ** * *
35642242 ATATTGGTAG-GAAGTGGATCGAAG-ATGCAAATCTTGTCTTCCCATACTGGTGGTGAAGTAGAT
193 ATATTGGTAGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATATATTGG-CGTGAAGTAGAT
* *
35642305 CGAAGAAAGT
257 CGAAGATAGC
* * *
35642315 AGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAATATAGCAGATCCTGTCTTCCTATATTG
1 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTG
* * * * * * *
35642380 GTAGCAAAGTGGATCGAAG-ATGTAGATCTTGTCTTCCCATATTGGCGGCGAAGTAGATCGAAGA
66 GTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGC-GTGAAGTAGATCGAAGA
* * * * *
35642444 AAGTAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGATGATAGCAGATCCTGTCTTCCTA
130 AAGCAGATCTTGTCTTCATATATTGGTAGTGAAGTAGATCGAAGAT-GCAGATCTTGTCTTCCTA
* * ** * * *
35642508 TATTGGTAG-GAAGTGGATCGAAG-ACGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATC
194 TATTGGTAGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATATATTGG-CGTGAAGTAGATC
*
35642571 GAAGAAAGC
258 GAAGATAGC
* *
35642580 AGATTTTGGCTTCATGTATTGGC--------G-T-GAAG-T---AGATCTTGTCTTCCTATATTG
1 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTG
* * * * * * * *
35642631 GTAGCGAAGTGGATCGAAG-ATGCAGATCTTGTTTTCCCATACTGGTGGCGAAGTAGATCGAAGA
66 GTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGA
* * * *
35642695 AAGCAGATCTTGTCTTCATGTATTGGCA-TGAAGTAGATCGAAGATGCAGATATTGTCTTCCCAT
130 AAGCAGATCTTGTCTTCATATATTGGTAGTGAAGTAGATCGAAGATGCAGATCTTGTCTTCCTAT
* * * * * *
35642759 ACTGGTGGTGAAGTAGATCGAAGAAAGAAGATATTGTCTTCATGTATTAGCGTGAAGTAGATCGA
195 ATTGGTAGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATATATTGGCGTGAAGTAGATCGA
35642824 AGATAGC
260 AGATAGC
* *
35642831 AGAT-TATGTCTTCTTATATTGG
1 AGATCT-TGTCTTCATGTATTGG
35642853 TAGTGAGGCA
Statistics
Matches: 2682, Mismatches: 444, Indels: 168
0.81 0.13 0.05
Matches are distributed among these distances:
250 23 0.01
251 168 0.06
252 18 0.01
254 1 0.00
255 3 0.00
256 1 0.00
257 1 0.00
262 4 0.00
263 5 0.00
264 251 0.09
265 1635 0.61
266 245 0.09
267 86 0.03
268 1 0.00
271 1 0.00
273 1 0.00
274 1 0.00
276 1 0.00
277 4 0.00
278 2 0.00
279 213 0.08
280 17 0.01
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (266 bp):
AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTG
GTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGAA
AGCAGATCTTGTCTTCATATATTGGTAGTGAAGTAGATCGAAGATGCAGATCTTGTCTTCCTATA
TTGGTAGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATATATTGGCGTGAAGTAGATCGAA
GATAGC
Found at i:35640055 original size:309 final size:310
Alignment explanation
Indices: 35639384--35642858 Score: 2774
Period size: 309 Copynumber: 11.2 Consensus size: 310
35639374 AAAAAGTAGA
* * * * * * *
35639384 AGATATTGTCTTCAT-AAATTGGCGTGAAGTAGATCGAAGATAGGAGATCCTGTCTTCCTATATT
1 AGATCTTGTCTTC-TCATATTGGCGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATT
* * * * * *
35639448 GGTAGCGAAGTGGATCGAAGATTTA-CAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGA
65 GGTCGTGAAGTAGATCGAAGA--TAGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGA
* * * *** * * * * *
35639512 ATAAAGCAGATTTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTC
128 A-GATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTC
* * * * * * * *
35639576 CTATATTGGTAG-GAAGTGGATCGAAGATA-CATATATTGTCTTCCCAT-ACTGGTGGCGAAGTA
192 ATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTT--CATGATTGGT-GTGAAGTA
* * * * *
35639638 GATTGAAGAAAGTAGATCTTGTCTTCATGTATTGG-GGTGAAGTAGATCGAAGATAGC
253 GATCGAAGATAGTAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGATAGC
* * * *
35639695 AGATCTTGTCTTC-CTATACTGGTG-GCAAAGTATATCGAAGAAAGTAGATCTTGTCTTCATGTA
1 AGATCTTGTCTTCTC-ATATTGGCGTG--AAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTA
* * * * *
35639758 TTAG-CGTGAAGTAGATCGAAGATAGAAGATCCTGTCTTCCTATATTAGTAG-GAAGTGGATCGA
63 TTGGTCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGA
* * *
35639821 AGATGAAGATCTTTTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTTA
128 AGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCA
*
35639886 TGTATTGGCGTGAAGTAGATCGAAGATAGCAAATCTTGTCTTCATGAATTGGTGTGAAGTAGATC
193 TGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATG-ATTGGTGTGAAGTAGATC
* * * *
35639951 GAAGATAGCAGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGATA-C
257 GAAGATAGTAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGATAGC
* * * * *
35640004 AAATCTTATCTTCTCATATTGGCAGTGAAGTAGATCGTAGAAAGCAGATCTTGTCTTCCTATATT
1 AGATCTTGTCTTCTCATATTGGC-GTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATT
* * * * * * * *
35640069 GGTAG-GAAGTGGATTGAAGA-CGCAGATCTTATCTTCCCATACTGGTGGCGAAGTAGATCGAAG
65 GGTCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAG
** *** * * * * * *
35640132 AAAACAGATCTTGTCTTCATGTATTAG-CGTGAAGTAGATCGAAGGTAA-TAGATCTTGTCTTCA
130 -ATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAA-GAAAGCAGATCTTGTCTTCA
* * * *
35640195 TGTATTGGCGTGAAGTAGATCGAAGATAGAAGATCTTGTTTTCCCAT-ACTGGTGGCGAAGTAGA
193 TGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTT--CATGATTGGT-GTGAAGTAGA
* * * * * *
35640259 TCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCA-TTAAGTAGATCGAAGATAGC
255 TCGAAGATAGTAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGATAGC
* * * * * *
35640314 AGATCTTGTCTT-T-ATGTATTGGCGTGGAGTAGATCGAAGATAGTAGATCATGTCTTCCTATAT
1 AGATCTTGTCTTCTCA--TATTGGCGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTAT
* * * * * **
35640377 TGGTAGTGAAGTGGATCGAAGAT-GCAGATCTTATCTTCCCATATTAGCGGCGAAGTAGATCGAA
64 TGGTCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAA
* * *** * * * *
35640441 GAAAGCAGATCTTTTCTTCATGTATTGG-CGTGAAGTAGATCGAA-AATAGCAGATCCTGTCTTT
129 G-ATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAA-AGCAGATCTTGTC-TT
* * * * * * * *
35640504 C-TATATTGGTAG-GAAGTGGATTGAAGAT-GCAGACCTAGTATTCCCAT-ACTGGTGGTGAAGT
191 CATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTT--CATGATTGGT-GTGAAGT
* * * * * *
35640565 AGATCGAAGAAAGTAGATCTTATCTTCATGTATTAG-CGTGAAGTAGATCGAAGATAGC
252 AGATCGAAGATAGTAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGATAGC
* * * * * * *
35640623 AGATCTTGTCTTCAT-GTATTGACGTGAAGTAGATCGAAGATAGTAGATCTTGTCTCCCTATATT
1 AGATCTTGTCTTC-TCATATTGGCGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATT
* * * * **
35640687 GGTAGCGAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGCGGCGAAGTAGATCGAAG
65 GGTCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAG
* *** * * * * * *
35640751 AAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAACATAGCAGATCCTGTCTTTC-
130 -ATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTC-TTCA
* * *
35640814 TATATTGGTAG-GAAGT-GAATCGAAGAT-GCAGATCTTGTCTTCCCAT-ACTGGTGGTGAAGTA
193 TGTATTGG-CGTGAAGTAG-ATCGAAGATAGCAGATCTTGTCTT--CATGATTGGT-GTGAAGTA
* * * * * * *
35640875 GATCGAAGAAAGCAGATATTGTCTTCATGTATTAG-CGTGAAGTAGATCGAAGATAGC
253 GATCGAAGATAGTAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGATAGC
* * *
35640932 AGATCTTGTCTTCAT-GTATTGGCGTGAAGTAGATCGAAGATAGTAGATCTTGTCTTCCCATACT
1 AGATCTTGTCTTC-TCATATTGGCGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTT--C--A-T
* * * * * * * * *
35640996 GGTGGCGAAGTAGATCGAAGAAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGG-CGT
60 -GT-----A-TTGGTCG-TG-AAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGC
* * * * * * *
35641060 GAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAG-ATGTA
116 GAAGTAGATCGAAGAT-GCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCA
*** * * * *
35641123 GATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATTG
180 GATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATG-ATTG
* * * * ** *
35641188 GTATGAAGTAGATCGAATATAGCAGATCCTGTCTTCCTATATTGGTAGCAAAGTGGATCGAAGAT
243 GTGTGAAGTAGATCGAAGATAGTAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGAT
35641253 A-C
308 AGC
* * *
35641255 AGATCTTGTCTTC-CTATATTAGCGGCGAAGTAGATCGAAGAAAGCATATCTTGTCTTCATGTAT
1 AGATCTTGTCTTCTC-ATATTGGC-GTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTAT
* * *
35641319 TGG-CGTGAAGTAGATCGAAGATAGCAGATCATGTCTTCCTATATTGGTAG-GAAGTGGATTGAA
64 TGGTCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAA
* * * *
35641382 GACGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCAAAGAAAGTAGATCTTGGCTTCAT
129 GATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCAT
* * *
35641447 GTATTGGCGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTATTGGCGTGGAGTAGATCG
194 GTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATG-ATTGGTGTGAAGTAGATCG
* * * *
35641512 AAGATAGTAGATCCTATCTTCCTATATTGGTAGTGAAGTGGATCGAAAAT-GC
258 AAGATAGTAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGATAGC
* * * *
35641564 AGATCTTATCTTCCCATATTGGCGGCGAAGTAGATCGAAGAAAGCAGATCTTTTCTTCATGTATT
1 AGATCTTGTCTTCTCATATTGGC-GTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATT
* * * * *
35641629 GG-CATGAAGTAGATCGAAAATAGCAGATCTTGTCTTTCTATATTGGTAG-GAAGTGGATTGAAG
65 GGTCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAG
* *
35641692 ATGCAGATCTTGTCTTCCCGTACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATG
130 ATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATG
* * ** *
35641757 TATTAGCGTGAAGTAGATCGAAGATAGTAGATCTTGTCTTCATGTATTGACGTAAAGTAGATCGA
195 TATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATG-ATTGGTGTGAAGTAGATCGA
* * * * * *
35641822 ATATGGTAGATCCTGTCTCCCTATATTGGTAGCGAAGTGGATCGAAGAT-GC
259 AGATAGTAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGATAGC
* * *
35641873 ATATCTTGTCTTCCCATATTGGCGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATT
1 AGATCTTGTCTTCTCATATTGGC-GTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATT
* * * *
35641938 -GTCGTGAAGTAGATCAAACATAGCAGATCCTGTCTTTCTATATTGGTAG-GAAGTAGATCGAAG
65 GGTCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAG
* * *
35642001 ATACAGATCTTGTCTTTCCATACTGGTGGCGAAGTAGATCGACGAAAGCAGATCTTGTCTTCATG
130 ATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATG
* * **
35642066 TATTAGCGTAAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGGCCTGAAGTAGATCGA
195 TATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATG-ATTGGTGTGAAGTAGATCGA
* * * * * *
35642131 AGATAGTAGATCTTGTCTTCCTATACTGGTGGCGAAGTAGATTGAAGAAAGT
259 AGATAGTAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGATAGC
* * * * *
35642183 AGATCTTGTCTTCAT-GTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATT
1 AGATCTTGTCTTC-TCATATTGGCGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATT
* * * * * * *
35642247 GGTAG-GAAGTGGATCGAAGAT-GCAAATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAG
65 GGTCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAG
* * * ** * * *
35642310 AAAGTAGATCTTGTCTT--CAT-GTATTGGCATGAAGTAGATCGAATATAGCAGATCCTGTCTTC
130 -ATGCAGATCTTGTCTTCCCATACTGGTGGC--GAAGTAGATCGAAGAAAGCAGATCTTGTCTTC
* * * ** * * * *
35642372 CTATATTGGTAGCAAAGTGGATCGAAGAT-GTAGATCTTGTCTTCCCAT-ATTGGCGGCGAAGTA
192 ATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTT--CATGATTGG-TGTGAAGTA
* * * * *
35642435 GATCGAAGAAAGTAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGATGATAGC
253 GATCGAAGATAGTAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGATAGC
* * * * *** *
35642492 AGATCCTGTCTTC-CTATATTGGTAG-GAAGTGGATCGAAG-ACGCAGATCTTGTCTTCCCATAC
1 AGATCTTGTCTTCTC-ATATTGG-CGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTAT
* * * * * * *
35642554 TGGTGGCGAAGTAGATCGAAGAAAGCAGATTTTGGCTTCATGTATT-G--GC------G-T-GAA
64 TGGTCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAA
* * * * * * **
35642608 G-T--AGATCTTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAG-ATGCAGATCTTGTTTTCCC
129 GATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCAT
* * * * * **
35642669 ATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATC
194 GTATTGG-CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATG-ATTGGTGTGAAGTAGATC
* * * * * * *
35642734 GAAGAT-GCAGATATTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAGA
257 GAAGATAGTAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGATAGC
* * * * * *
35642787 AGATATTGTCTTCAT-GTATTAGCGTGAAGTAGATCGAAGATAGCAGAT-TATGTCTTCTTATAT
1 AGATCTTGTCTTC-TCATATTGGCGTGAAGTAGATCGAAGAAAGCAGATCT-TGTCTTCATGTAT
*
35642850 TGGTAGTGA
64 TGGTCGTGA
35642859 GGCAGACTGA
Statistics
Matches: 2662, Mismatches: 406, Indels: 207
0.81 0.12 0.06
Matches are distributed among these distances:
294 22 0.01
295 111 0.04
296 53 0.02
297 2 0.00
298 4 0.00
299 4 0.00
300 1 0.00
301 1 0.00
307 6 0.00
308 116 0.04
309 1620 0.61
310 386 0.15
311 48 0.02
312 35 0.01
313 1 0.00
314 1 0.00
315 1 0.00
318 2 0.00
319 1 0.00
320 2 0.00
321 7 0.00
322 24 0.01
323 129 0.05
324 85 0.03
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (310 bp):
AGATCTTGTCTTCTCATATTGGCGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTG
GTCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGA
TGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGT
ATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGATTGGTGTGAAGTAGATCGAAG
ATAGTAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGATAGC
Found at i:35641022 original size:14 final size:14
Alignment explanation
Indices: 35641003--35641039 Score: 74
Period size: 14 Copynumber: 2.6 Consensus size: 14
35640993 ACTGGTGGCG
35641003 AAGTAGATCGAAGA
1 AAGTAGATCGAAGA
35641017 AAGTAGATCGAAGA
1 AAGTAGATCGAAGA
35641031 AAGTAGATC
1 AAGTAGATC
35641040 TTGTCTTCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.49, C:0.08, G:0.27, T:0.16
Consensus pattern (14 bp):
AAGTAGATCGAAGA
Found at i:35642668 original size:119 final size:118
Alignment explanation
Indices: 35642492--35642733 Score: 421
Period size: 119 Copynumber: 2.0 Consensus size: 118
35642482 CGATGATAGC
35642492 AGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGACGCAGATCTTGTCTTCCCATACTGG
1 AGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGACGCAGATCTTGTCTTCCCATACTGG
* *
35642557 TGGCGAAGTAGATCGAAGAAAGCAGATTTTGGCTTCATGTATTGGCGTGAAGT
66 TGGCGAAGTAGATCGAAGAAAGCAGATCTTGGCTTCATGTATTGGCATGAAGT
* * *
35642610 AGATCTTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGATGCAGATCTTGTTTTCCCATACTG
1 AGATCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGACGCAGATCTTGTCTTCCCATACTG
*
35642675 GTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGT
65 GTGGCGAAGTAGATCGAAGAAAGCAGATCTTGGCTTCATGTATTGGCATGAAGT
35642729 AGATC
1 AGATC
35642734 GAAGATGCAG
Statistics
Matches: 117, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
118 24 0.21
119 93 0.79
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.31
Consensus pattern (118 bp):
AGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGACGCAGATCTTGTCTTCCCATACTGG
TGGCGAAGTAGATCGAAGAAAGCAGATCTTGGCTTCATGTATTGGCATGAAGT
Found at i:35642682 original size:44 final size:44
Alignment explanation
Indices: 35642610--35642782 Score: 199
Period size: 44 Copynumber: 3.9 Consensus size: 44
35642600 GGCGTGAAGT
* * * *
35642610 AGATCTTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGATGC
1 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGATGC
* *
35642654 AGATCTTGTTTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGC
1 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAG-ATGC
* **
35642699 AGATCTTGTCTT--CAT-GTATTGGCATGAAGTAGATCGAAGATGC
1 AGATCTTGTCTTCCCATACTGGTGGC--GAAGTAGATCGAAGATGC
* *
35642742 AGATATTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGA
1 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGA
35642783 AAGAAGATAT
Statistics
Matches: 107, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
42 5 0.05
43 17 0.16
44 64 0.60
45 17 0.16
46 4 0.04
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.30
Consensus pattern (44 bp):
AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGATGC
Found at i:35642738 original size:88 final size:88
Alignment explanation
Indices: 35642610--35642843 Score: 326
Period size: 88 Copynumber: 2.6 Consensus size: 88
35642600 GGCGTGAAGT
* * * * * * *
35642610 AGATCTTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGATGCAGATCTTGTTTTCCCATACTG
1 AGATCTTGTCTTCATGTATTGGCA-TGAAGTAGATCGAAGATGCAGATATTGTCTTCCCATACTG
*
35642675 GTGGCGAAGTAGATCGAAGAAAGC
65 GTGGCGAAGTAGATCGAAGAAAGA
35642699 AGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGATGCAGATATTGTCTTCCCATACTGG
1 AGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGATGCAGATATTGTCTTCCCATACTGG
*
35642764 TGGTGAAGTAGATCGAAGAAAGA
66 TGGCGAAGTAGATCGAAGAAAGA
* * *
35642787 AGATATTGTCTTCATGTATTAGCGTGAAGTAGATCGAAGATAGCAGAT-TATGTCTTC
1 AGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGAT-GCAGATAT-TGTCTTC
35642844 TTATATTGGT
Statistics
Matches: 131, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
88 97 0.74
89 34 0.26
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.31
Consensus pattern (88 bp):
AGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGATGCAGATATTGTCTTCCCATACTGG
TGGCGAAGTAGATCGAAGAAAGA
Found at i:35642756 original size:207 final size:207
Alignment explanation
Indices: 35642401--35642821 Score: 574
Period size: 207 Copynumber: 2.0 Consensus size: 207
35642391 GATCGAAGAT
* * **
35642401 GTAGATCTTGTCTTCCCATATTGGCGGCGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTA
1 GTAGATCTTGTCTTCCCATATTGGCAGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCACATA
* * * * * * *
35642466 TTGGCGTGAAGTAGATCGATGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAG
66 CTGGCGCGAAGTAGATCGAAGAAAGCAGATCCTGTCTTCATATATTGGCAGGAAGTAGATCGAAG
* * *
35642531 ACGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATTTTGGCTTCATG
131 ACGCAGATATTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGAAGATATTGGCTTCATG
*
35642596 TATTGGCGTGAA
196 TATTAGCGTGAA
* * * * * *
35642608 GTAGATCTTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAG-ATGCAGATCTTGTTTTCCCATA
1 GTAGATCTTGTCTTCCCATATTGGCAGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCACATA
* * * *
35642672 CTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAA
66 CTGG-CGCGAAGTAGATCGAAGAAAGCAGATCCTGTCTTCATATATTGGCAGGAAGTAGATCGAA
* * *
35642737 GATGCAGATATTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAGAAGATATTGTCTTCAT
130 GACGCAGATATTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGAAGATATTGGCTTCAT
35642802 GTATTAGCGTGAA
195 GTATTAGCGTGAA
35642815 GTAGATC
1 GTAGATC
35642822 GAAGATAGCA
Statistics
Matches: 185, Mismatches: 28, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
206 19 0.10
207 166 0.90
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (207 bp):
GTAGATCTTGTCTTCCCATATTGGCAGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCACATA
CTGGCGCGAAGTAGATCGAAGAAAGCAGATCCTGTCTTCATATATTGGCAGGAAGTAGATCGAAG
ACGCAGATATTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGAAGATATTGGCTTCATG
TATTAGCGTGAA
Found at i:35642777 original size:119 final size:119
Alignment explanation
Indices: 35642403--35642777 Score: 360
Period size: 119 Copynumber: 3.0 Consensus size: 119
35642393 TCGAAGATGT
* * *
35642403 AGATCTTGTCTTCCCATATTGGCGGCGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATT
1 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATT
** *
35642468 GGCGTGAAGTAGATCGATGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGAC
66 GGCGTGAAGTAGATCGATGAT-GCAGATATTGTCTTCCCATA---GT--G--GTGG-T-G-A-A-
35642533 GC
118 GC
* *
35642535 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATTTTGGCTTCATGTATT
1 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATT
* * * ** * ** * ** *
35642600 GGCGTGAAGTAGATC-TTGTCTTCCTATATTG-GTAGCGA-AGTGGATCGAAGATGC
66 GGCGTGAAGTAGATCGATG-ATGCAGATATTGTCTTCCCATAGTGG-T-GGTGAAGC
*
35642654 AGATCTTGTTTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATT
1 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATT
* * * *
35642719 GGCATGAAGTAGATCGAAGATGCAGATATTGTCTTCCCATACTGGTGGTGAAGT
66 GGCGTGAAGTAGATCGATGATGCAGATATTGTCTTCCCATAGTGGTGGTGAAGC
35642773 AGATC
1 AGATC
35642778 GAAGAAAGAA
Statistics
Matches: 199, Mismatches: 38, Indels: 25
0.76 0.15 0.10
Matches are distributed among these distances:
119 95 0.48
120 5 0.03
121 5 0.03
122 2 0.01
123 1 0.01
124 2 0.01
126 2 0.01
129 1 0.01
130 3 0.02
131 7 0.04
132 76 0.38
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.30
Consensus pattern (119 bp):
AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATT
GGCGTGAAGTAGATCGATGATGCAGATATTGTCTTCCCATAGTGGTGGTGAAGC
Done.