Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67659327
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 461372 characters in sequence are not A, C, G, or T
File 113 of 216
Found at i:35876095 original size:27 final size:26
Alignment explanation
Indices: 35876047--35876097 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 26
35876037 TAGAATTAAT
*
35876047 TTGTTATTCATCATTTGCTTTGTATA
1 TTGTTAATCATCATTTGCTTTGTATA
35876073 TTGTTAATCAATCATGTTG-TTTGTA
1 TTGTTAATC-ATCAT-TTGCTTTGTA
35876098 AGAATTTCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 8 0.36
27 11 0.50
28 3 0.14
ACGTcount: A:0.22, C:0.10, G:0.14, T:0.55
Consensus pattern (26 bp):
TTGTTAATCATCATTTGCTTTGTATA
Found at i:35888237 original size:44 final size:44
Alignment explanation
Indices: 35888187--35888806 Score: 218
Period size: 44 Copynumber: 13.2 Consensus size: 44
35888177 AGTGTAAGGA
* *
35888187 AGCAGATTGAAGCTAGTAATCCTATCTCCCTAAGATTACAGTGG
1 AGCAGATTGAAGCTAGTAATCTTATCTCCCTGAGATTACAGTGG
** * * *
35888231 AGCAGATT-AAAATAAAG-GATCTTATCTCTCTGAAGTTATAGTAGAGTAGATCG
1 AGCAGATTGAAGCT--AGTAATCTTATCTCCCTG-AG--AT--TACAGT-G---G
* * * * * **
35888284 CATCAAATTGAAGCCAGAAATCTTATCTCCTTGAGATTACAGCAG
1 -AGCAGATTGAAGCTAGTAATCTTATCTCCCTGAGATTACAGTGG
* * *
35888329 AGCATATCGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGG
1 AGCAGATTGAAGCTAGTAATCTTATCTCCCTGAGATTACAGTGG
* ** * *
35888373 AGCGGATT-AAAATAAAG-GATCTTATCTCTCTGA-AGTTACAGTAGAG
1 AGCAGATTGAAGCT--AGTAATCTTATCTCCCTGAGA-TTACAGT-G-G
* * *
35888419 TAGATCACATTAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGG
1 -AG----C---AGATTGAAGCTAGTAATCTTATCTCCCTGAGATTACAGTGG
* * *
35888471 AGTAGATCGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGG
1 AGCAGATTGAAGCTAGTAATCTTATCTCCCTGAGATTACAGTGG
* ** * *
35888515 AGCGGATT-AAAATACAG-GATCTTATCTCTCTGA-AGTTACAGTAGAGTAG
1 AGCAGATTGAAGCT--AGTAATCTTATCTCCCTGAGA-TTACAGT---G--G
* * * * *
35888564 ATCGCATCAGATTGAAACCAGAAATCTTATCTCTCTGAGATTACAGCGG
1 A--G---CAGATTGAAGCTAGTAATCTTATCTCCCTGAGATTACAGTGG
* *
35888613 AGCAGATTGAAGCTAGTAATCCTATCTCCCTGATATTACAGTGG
1 AGCAGATTGAAGCTAGTAATCTTATCTCCCTGAGATTACAGTGG
** ** * *
35888657 AGTGGATT-AAAATAAAG-GATCTTATCTCTCTGA-AGTTACAGTAGAGTAG
1 AGCAGATTGAAGCT--AGTAATCTTATCTCCCTGAGA-TTACAGT---G--G
* * * * * **
35888706 ATCGCATCAGATTGAAACCAGAAATCTTATTTCCCTGAGATTATAACGG
1 A--G---CAGATTGAAGCTAGTAATCTTATCTCCCTGAGATTACAGTGG
*
35888755 AGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGG
1 AGCAGATTGAAGCTAGTAATCTTATCTCCCTGAGATTACAGTGG
35888799 AGCAGATT
1 AGCAGATT
35888807 AAGATAAAGG
Statistics
Matches: 421, Mismatches: 93, Indels: 124
0.66 0.15 0.19
Matches are distributed among these distances:
43 15 0.04
44 243 0.58
45 12 0.03
46 1 0.00
47 8 0.02
49 17 0.04
50 1 0.00
51 9 0.02
52 1 0.00
53 12 0.03
54 89 0.21
55 13 0.03
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.28
Consensus pattern (44 bp):
AGCAGATTGAAGCTAGTAATCTTATCTCCCTGAGATTACAGTGG
Found at i:35888451 original size:142 final size:142
Alignment explanation
Indices: 35888187--35888857 Score: 1126
Period size: 142 Copynumber: 4.7 Consensus size: 142
35888177 AGTGTAAGGA
* * *
35888187 AGCAGATTGAAGCTAGTAATCCTATCTCCCTAAGATTACAGTGGAGCAGATTAAAATAAAGGATC
1 AGCAGATCGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATC
* * * *
35888252 TTATCTCTCTGAAGTTATAGTAGAGTAGATCGCATCAAATTGAAGCCAGAAATCTTATCTCCTTG
66 TTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAACCAGAAATCTTATCTCCCTG
*
35888317 AGATTACAGCAG
131 AGATTACAGCGG
*
35888329 AGCATATCGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATC
1 AGCAGATCGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATC
* * *
35888394 TTATCTCTCTGAAGTTACAGTAGAGTAGATCACATTAGATTGAAGCCAGAAATCTTATCTCCCTG
66 TTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAACCAGAAATCTTATCTCCCTG
35888459 AGATTACAGCGG
131 AGATTACAGCGG
* *
35888471 AGTAGATCGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATACAGGATC
1 AGCAGATCGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATC
*
35888536 TTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAACCAGAAATCTTATCTCTCTG
66 TTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAACCAGAAATCTTATCTCCCTG
35888601 AGATTACAGCGG
131 AGATTACAGCGG
* * *
35888613 AGCAGATTGAAGCTAGTAATCCTATCTCCCTGATATTACAGTGGAGTGGATTAAAATAAAGGATC
1 AGCAGATCGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATC
*
35888678 TTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAACCAGAAATCTTATTTCCCTG
66 TTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAACCAGAAATCTTATCTCCCTG
* *
35888743 AGATTATAACGG
131 AGATTACAGCGG
* * *
35888755 AGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCAGATTAAGATAAAGGATC
1 AGCAGATCGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATC
35888820 TTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
66 TTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
35888858 GTCTTATCTC
Statistics
Matches: 499, Mismatches: 30, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
142 499 1.00
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (142 bp):
AGCAGATCGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATC
TTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAACCAGAAATCTTATCTCCCTG
AGATTACAGCGG
Found at i:35888825 original size:44 final size:42
Alignment explanation
Indices: 35888729--35888884 Score: 113
Period size: 44 Copynumber: 3.6 Consensus size: 42
35888719 GAAACCAGAA
* * ** * *
35888729 ATCTTATTTCCCTGAGATTATAACGGAGCAGATTGAAGCTAGTA
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATT-AAGATAG-G
*
35888773 ATCCTATCTCCCTGAGATTACAGTGGAGCAGATTAAGATAAAGG
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAGAT--AGG
* * * *
35888817 ATCTTATCTCTCTGA-AGTTACAGTAGAGTAGA-T-CGCATCAGG
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTAAG-AT-AGG
*
35888859 -TCTTATCTCCCTGAGATTACATTGGA
1 ATCTTATCTCCCTGAGATTACAGTGGA
35888885 ATGGACAGAA
Statistics
Matches: 91, Mismatches: 16, Indels: 13
0.76 0.13 0.11
Matches are distributed among these distances:
41 21 0.23
42 5 0.05
43 8 0.09
44 55 0.60
45 2 0.02
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.31
Consensus pattern (42 bp):
ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAGATAGG
Found at i:35888879 original size:85 final size:85
Alignment explanation
Indices: 35888777--35888947 Score: 220
Period size: 85 Copynumber: 2.0 Consensus size: 85
35888767 CTAGTAATCC
* * *
35888777 TATCTCCCTGAGATTACAGTGG-A-GCAGATTAAGATAAAGGATCTTATCTCTCTGAAGTTACAG
1 TATCTCCCTGAGATTACAGTGGAATGCACA-GAAGA-AAACGATCTTATCTCTCTGAAGTTACAG
* *
35888840 TAGAGTAGATCGCATCAGGTCT
64 TAGAGCAGATCGCATCAAGTCT
* * * * *
35888862 TATCTCCCTGAGATTACATTGGAATGGACAGAAGAGACCGATCTTATCTCTCTGAAGTTGCAGTA
1 TATCTCCCTGAGATTACAGTGGAATGCACAGAAGAAAACGATCTTATCTCTCTGAAGTTACAGTA
35888927 GAGCAGATCGCATCAAGTCT
66 GAGCAGATCGCATCAAGTCT
35888947 T
1 T
35888948 GCCAAGTGGA
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
85 66 0.89
86 5 0.07
87 3 0.04
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (85 bp):
TATCTCCCTGAGATTACAGTGGAATGCACAGAAGAAAACGATCTTATCTCTCTGAAGTTACAGTA
GAGCAGATCGCATCAAGTCT
Found at i:35893046 original size:85 final size:85
Alignment explanation
Indices: 35892882--35893048 Score: 203
Period size: 85 Copynumber: 2.0 Consensus size: 85
35892872 TATATCATTG
* * * * *
35892882 ACAACATAGGCCTTTGGTTGTGCGAGAGCATCGGGTAGCATCGACACCTTGGTGCTTGGACGTGC
1 ACAACATAGGCCCTTGGTTGCGCGAGAGCATCGGGCAGCATCGACACCTTGGTGCTTGGACATAC
* *
35892947 GGGAGTCTCAGACACCAGCA
66 GGAAGCCTCAGACACCAGCA
* * *
35892967 ACAATATAGGCCCTTGGTTGCGTGGGAGCATCGGGCAGCATCAGA-ACCTAT-GTGCTTGGACAT
1 ACAACATAGGCCCTTGGTTGCGCGAGAGCATCGGGCAGCATC-GACACCT-TGGTGCTTGGACAT
*
35893030 ACGGAAGCCTCGGACACCA
64 ACGGAAGCCTCAGACACCA
35893049 TCAGAAACCT
Statistics
Matches: 69, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
85 66 0.96
86 3 0.04
ACGTcount: A:0.24, C:0.25, G:0.31, T:0.20
Consensus pattern (85 bp):
ACAACATAGGCCCTTGGTTGCGCGAGAGCATCGGGCAGCATCGACACCTTGGTGCTTGGACATAC
GGAAGCCTCAGACACCAGCA
Found at i:35894908 original size:23 final size:21
Alignment explanation
Indices: 35894851--35894918 Score: 77
Period size: 22 Copynumber: 3.2 Consensus size: 21
35894841 AAAAGCTATC
*
35894851 TACAAATCAAATCTTTAAGAT
1 TACAAATCATATCTTTAAGAT
35894872 TACAGAATCATATCTTCTAAAGAT
1 TACA-AATCATATCTT-T-AAGAT
*
35894896 TACATATCATATC--TAAGAT
1 TACAAATCATATCTTTAAGAT
35894915 TACA
1 TACA
35894919 TATATTTGAA
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
19 9 0.21
20 1 0.02
21 4 0.10
22 10 0.24
23 9 0.21
24 9 0.21
ACGTcount: A:0.44, C:0.16, G:0.06, T:0.34
Consensus pattern (21 bp):
TACAAATCATATCTTTAAGAT
Found at i:35901639 original size:22 final size:23
Alignment explanation
Indices: 35901610--35901668 Score: 59
Period size: 22 Copynumber: 2.6 Consensus size: 23
35901600 AAAAGCTATC
35901610 TACAAATCAAATCTT-T-AAGAT
1 TACAAATCAAATCTTCTAAAGAT
**
35901631 TACAGAATCGTATCTTCTAAAGAT
1 TACA-AATCAAATCTTCTAAAGAT
* *
35901655 TACATATCATATCT
1 TACAAATCAAATCT
35901669 AAGATTACAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
21 4 0.13
22 9 0.29
23 9 0.29
24 9 0.29
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (23 bp):
TACAAATCAAATCTTCTAAAGAT
Found at i:35906611 original size:50 final size:50
Alignment explanation
Indices: 35906532--35906720 Score: 216
Period size: 50 Copynumber: 3.8 Consensus size: 50
35906522 TTAAGGGAAT
* * ** *
35906532 GAGGTCTCATGTAAGACCATGTCTCGGACATGGTGTTGGCACCGAGATAA
1 GAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGA
* *
35906582 GAGGTCCCATGTAATACCATGTCTGGGACATGGCATTGGCATCGAGATGA
1 GAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGA
** * * * *
35906632 GAGGTCCCCCGTAAGACCATGTCTAGGACATGGCATGGGCACCAATATGA
1 GAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGA
** * * *
35906682 GAACTCCCATGTAAGACCATATCTGGGATATAGCATTGG
1 GAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGG
35906721 TAGTACAAGA
Statistics
Matches: 115, Mismatches: 24, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
50 115 1.00
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.23
Consensus pattern (50 bp):
GAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGA
Found at i:35927898 original size:24 final size:24
Alignment explanation
Indices: 35927852--35927899 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
35927842 TTTACTACAA
** *
35927852 TATTGAGTGGCTTGGCCACAACGT
1 TATTGAGTGGCAAGACCACAACGT
*
35927876 TATTGAGTGGCAAGACCATAACGT
1 TATTGAGTGGCAAGACCACAACGT
35927900 GCAACTGTCT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (24 bp):
TATTGAGTGGCAAGACCACAACGT
Found at i:35929900 original size:22 final size:23
Alignment explanation
Indices: 35929856--35929902 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 23
35929846 AATTAATGAC
*
35929856 ATATGTGAAAATATGAAATTATG
1 ATATGTGAAAATATGAAAATATG
* *
35929879 ATAT-TGAAATTATTAAAATATG
1 ATATGTGAAAATATGAAAATATG
35929901 AT
1 AT
35929903 TTTATGCTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 17 0.81
23 4 0.19
ACGTcount: A:0.49, C:0.00, G:0.13, T:0.38
Consensus pattern (23 bp):
ATATGTGAAAATATGAAAATATG
Found at i:35940739 original size:15 final size:15
Alignment explanation
Indices: 35940721--35940758 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
35940711 CACTATTTAT
35940721 AGTTTCATAATCTAG
1 AGTTTCATAATCTAG
* *
35940736 AGTTTCACATTCTAG
1 AGTTTCATAATCTAG
35940751 AGTTTCAT
1 AGTTTCAT
35940759 TATATAAGAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.42
Consensus pattern (15 bp):
AGTTTCATAATCTAG
Found at i:35945549 original size:13 final size:13
Alignment explanation
Indices: 35945531--35945555 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
35945521 TTGATGAACT
35945531 TTCATACAAACCA
1 TTCATACAAACCA
35945544 TTCATACAAACC
1 TTCATACAAACC
35945556 CTATTTATTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.32, G:0.00, T:0.24
Consensus pattern (13 bp):
TTCATACAAACCA
Found at i:35945605 original size:81 final size:81
Alignment explanation
Indices: 35945470--35945621 Score: 259
Period size: 81 Copynumber: 1.9 Consensus size: 81
35945460 GAGTAAAAAA
** * * *
35945470 AAACCCTATTTATTCATCTTTCTTACTTATATTTGAGTCAGAATACACTTCTTGATGAACTTTCA
1 AAACCCTATTTATTCATCTTTAGTACCTATATTTCAGTCAGAATACACTTCTTGATGAACCTTCA
35945535 TACAAACCATTCATAC
66 TACAAACCATTCATAC
35945551 AAACCCTATTTATTCATCTTTAGTACCTATATTTCAGTCAGAATACACTTCTTGATGAACCTTCA
1 AAACCCTATTTATTCATCTTTAGTACCTATATTTCAGTCAGAATACACTTCTTGATGAACCTTCA
35945616 TACAAA
66 TACAAA
35945622 ACCCGACCCC
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
81 66 1.00
ACGTcount: A:0.33, C:0.22, G:0.07, T:0.38
Consensus pattern (81 bp):
AAACCCTATTTATTCATCTTTAGTACCTATATTTCAGTCAGAATACACTTCTTGATGAACCTTCA
TACAAACCATTCATAC
Found at i:35955962 original size:68 final size:68
Alignment explanation
Indices: 35955883--35956021 Score: 278
Period size: 68 Copynumber: 2.0 Consensus size: 68
35955873 TATGCATAAT
35955883 TATATCATCAACTCAAATAATATACTTACCTTATTTTCATGAACACTTAACTTCACACGTACCTG
1 TATATCATCAACTCAAATAATATACTTACCTTATTTTCATGAACACTTAACTTCACACGTACCTG
35955948 AAC
66 AAC
35955951 TATATCATCAACTCAAATAATATACTTACCTTATTTTCATGAACACTTAACTTCACACGTACCTG
1 TATATCATCAACTCAAATAATATACTTACCTTATTTTCATGAACACTTAACTTCACACGTACCTG
35956016 AAC
66 AAC
35956019 TAT
1 TAT
35956022 TTAGCTCAAT
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
68 71 1.00
ACGTcount: A:0.37, C:0.24, G:0.04, T:0.35
Consensus pattern (68 bp):
TATATCATCAACTCAAATAATATACTTACCTTATTTTCATGAACACTTAACTTCACACGTACCTG
AAC
Found at i:35956397 original size:34 final size:35
Alignment explanation
Indices: 35956354--35956426 Score: 94
Period size: 34 Copynumber: 2.1 Consensus size: 35
35956344 TTCCATGCTA
** *
35956354 AATTCAATTCGGCAATGTA-ATTATACATACATAC
1 AATTCAATTCGGCAATGTACAAAATAAATACATAC
* *
35956388 AATTCAATTCTGCTATGTACAAAATAAATACATAC
1 AATTCAATTCGGCAATGTACAAAATAAATACATAC
35956423 AATT
1 AATT
35956427 TAACATCATT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
34 17 0.52
35 16 0.48
ACGTcount: A:0.44, C:0.16, G:0.07, T:0.33
Consensus pattern (35 bp):
AATTCAATTCGGCAATGTACAAAATAAATACATAC
Found at i:35957143 original size:22 final size:22
Alignment explanation
Indices: 35957118--35957159 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
35957108 TCATTTTGAT
35957118 TTAATGA-ATTAATAATTTAACC
1 TTAATGATATT-ATAATTTAACC
*
35957140 TTAATGATATTTTAATTTAA
1 TTAATGATATTATAATTTAA
35957160 AACACTTGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 15 0.83
23 3 0.17
ACGTcount: A:0.43, C:0.05, G:0.05, T:0.48
Consensus pattern (22 bp):
TTAATGATATTATAATTTAACC
Found at i:35958036 original size:15 final size:15
Alignment explanation
Indices: 35958000--35958036 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
35957990 TTAACTAATA
*
35958000 ATCATTATGTAATTC
1 ATCATTCTGTAATTC
*
35958015 ATCATTCTGTAGTTC
1 ATCATTCTGTAATTC
35958030 ATCATTC
1 ATCATTC
35958037 GTCTCAAACT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.27, C:0.19, G:0.08, T:0.46
Consensus pattern (15 bp):
ATCATTCTGTAATTC
Found at i:35958308 original size:7 final size:7
Alignment explanation
Indices: 35958296--35958324 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
35958286 TAATTCATCG
35958296 AACATTT
1 AACATTT
35958303 AACATTT
1 AACATTT
35958310 AACATTT
1 AACATTT
35958317 AACATTT
1 AACATTT
35958324 A
1 A
35958325 CTAATATCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.45, C:0.14, G:0.00, T:0.41
Consensus pattern (7 bp):
AACATTT
Found at i:35958514 original size:20 final size:20
Alignment explanation
Indices: 35958503--35958541 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
35958493 AAGTGTATAT
35958503 AGGGGCACCGAAGTGCAAAC
1 AGGGGCACCGAAGTGCAAAC
*
35958523 AGGGGCACCCAAGTGCAAA
1 AGGGGCACCGAAGTGCAAA
35958542 TCCCATACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.36, C:0.26, G:0.33, T:0.05
Consensus pattern (20 bp):
AGGGGCACCGAAGTGCAAAC
Found at i:35968112 original size:28 final size:28
Alignment explanation
Indices: 35968056--35968117 Score: 74
Period size: 28 Copynumber: 2.2 Consensus size: 28
35968046 TGAGGTTGCT
* *
35968056 TTATTTGTATCCACAATATTTGCATTTA
1 TTATTTGTATCCACAATATGTACATTTA
35968084 TTATTTGTATCCACTAA-ATGTAC-TATTA
1 TTATTTGTATCCAC-AATATGTACAT-TTA
35968112 TTATTT
1 TTATTT
35968118 TATAATCAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
27 1 0.03
28 27 0.90
29 2 0.07
ACGTcount: A:0.29, C:0.13, G:0.06, T:0.52
Consensus pattern (28 bp):
TTATTTGTATCCACAATATGTACATTTA
Found at i:35968717 original size:9 final size:9
Alignment explanation
Indices: 35968702--35968753 Score: 59
Period size: 9 Copynumber: 5.8 Consensus size: 9
35968692 TTTTGGTTAA
35968702 AAATTAACC
1 AAATTAACC
* *
35968711 GAATTAACT
1 AAATTAACC
* *
35968720 AGATTATCC
1 AAATTAACC
35968729 AAATTAACC
1 AAATTAACC
35968738 AAATTAACC
1 AAATTAACC
*
35968747 GAATTAA
1 AAATTAA
35968754 ATCACTACAT
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
9 34 1.00
ACGTcount: A:0.50, C:0.17, G:0.06, T:0.27
Consensus pattern (9 bp):
AAATTAACC
Found at i:35968743 original size:18 final size:18
Alignment explanation
Indices: 35968702--35968753 Score: 68
Period size: 18 Copynumber: 2.9 Consensus size: 18
35968692 TTTTGGTTAA
*
35968702 AAATTAACCGAATTAACT
1 AAATTAACCGAATTAACC
* * *
35968720 AGATTATCCAAATTAACC
1 AAATTAACCGAATTAACC
35968738 AAATTAACCGAATTAA
1 AAATTAACCGAATTAA
35968754 ATCACTACAT
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.50, C:0.17, G:0.06, T:0.27
Consensus pattern (18 bp):
AAATTAACCGAATTAACC
Found at i:35969401 original size:16 final size:16
Alignment explanation
Indices: 35969380--35969416 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
35969370 TTGGTTCGCT
*
35969380 GTAATGGAATAGATGC
1 GTAATGGAATAGAGGC
35969396 GTAATGGAATAGAGGC
1 GTAATGGAATAGAGGC
35969412 GTAAT
1 GTAAT
35969417 AGGTAATTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.38, C:0.05, G:0.32, T:0.24
Consensus pattern (16 bp):
GTAATGGAATAGAGGC
Found at i:35969485 original size:44 final size:46
Alignment explanation
Indices: 35969396--35969493 Score: 155
Period size: 44 Copynumber: 2.2 Consensus size: 46
35969386 GAATAGATGC
* *
35969396 GTAATGGAATAGAGGCGTAATAGGTAATTCTTTTGTTTGGTTGAAT
1 GTAATAGAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTTGAAT
35969442 GTAATAGAATAGAGGCGTAAT-GGT-ATTCTTGTGTTTGGTTGAAT
1 GTAATAGAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTTGAAT
*
35969486 GAAATAGA
1 GTAATAGA
35969494 GGTGTAATAG
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
44 26 0.53
45 3 0.06
46 20 0.41
ACGTcount: A:0.31, C:0.04, G:0.29, T:0.37
Consensus pattern (46 bp):
GTAATAGAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTTGAAT
Found at i:35969690 original size:17 final size:17
Alignment explanation
Indices: 35969650--35969683 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
35969640 TTGTTATAGA
35969650 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
35969667 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
35969684 TGTTAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:35969755 original size:20 final size:21
Alignment explanation
Indices: 35969716--35969755 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
35969706 AATTTACTAA
*
35969716 TAAAATCATAATATATAATAC
1 TAAAATCATAATATAAAATAC
*
35969737 TAAAAT-ATAATTTAAAATA
1 TAAAATCATAATATAAAATA
35969756 ATTATTATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (21 bp):
TAAAATCATAATATAAAATAC
Found at i:35969768 original size:26 final size:28
Alignment explanation
Indices: 35969723--35969803 Score: 94
Period size: 28 Copynumber: 2.9 Consensus size: 28
35969713 TAATAAAATC
35969723 ATAATATATAATACTAAAATATAATTTAA-A
1 ATAATATATAAT--T-AAATATAATTTAATA
*
35969753 ATAAT-TATTATTAAATATAATTTAATA
1 ATAATATATAATTAAATATAATTTAATA
* *
35969780 ATAATATATAATTTAATAAAATTT
1 ATAATATATAATTAAATATAATTT
35969804 TTATTCTTAT
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
26 13 0.29
27 7 0.16
28 15 0.33
29 5 0.11
30 5 0.11
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.43
Consensus pattern (28 bp):
ATAATATATAATTAAATATAATTTAATA
Found at i:35969841 original size:108 final size:115
Alignment explanation
Indices: 35969630--35969889 Score: 371
Period size: 117 Copynumber: 2.3 Consensus size: 115
35969620 TTAATCATAT
* *
35969630 TTTAACATAATTGTTA-TAGAATATAATTTAATAA-AATATATAATTTAATAAAATTGTTAATAA
1 TTTAAAATAATTATTATTA-AATATAATTTAATAATAATATATAATTTAATAAAATTGTT-AT--
35969693 ATATTCTTATATGAATTTACTAATAAAATCATAATATATAATAC-TAAAATATAA
62 ATATTCTTATATGAATTTACT-ATAAAATCATAATATATAATACATAAAATATAA
35969747 TTTAAAATAATTATTATTAAATATAATTTAATAATAATATATAATTTAATAAAA-T-TT-T-TAT
1 TTTAAAATAATTATTATTAAATATAATTTAATAATAATATATAATTTAATAAAATTGTTATATAT
35969808 TCTTATATGAATTTA-T-TAAAATCATAATATATAATACTATAAAATATAA
66 TCTTATATGAATTTACTATAAAATCATAATATATAATAC-ATAAAATATAA
35969857 TTT-AAATAATTATTATTAAATATAATTT-ATAAT
1 TTTAAAATAATTATTATTAAATATAATTTAATAAT
35969890 CTACTTTATT
Statistics
Matches: 137, Mismatches: 2, Indels: 17
0.88 0.01 0.11
Matches are distributed among these distances:
108 26 0.19
109 25 0.18
110 14 0.10
111 18 0.13
114 1 0.01
116 2 0.01
117 30 0.22
118 21 0.15
ACGTcount: A:0.51, C:0.03, G:0.02, T:0.44
Consensus pattern (115 bp):
TTTAAAATAATTATTATTAAATATAATTTAATAATAATATATAATTTAATAAAATTGTTATATAT
TCTTATATGAATTTACTATAAAATCATAATATATAATACATAAAATATAA
Found at i:35969881 original size:32 final size:32
Alignment explanation
Indices: 35969845--35969908 Score: 74
Period size: 32 Copynumber: 2.0 Consensus size: 32
35969835 TATATAATAC
*
35969845 TATAAAATATAATTTAAATAATTATTATTAAA
1 TATAAAATATAATCTAAATAATTATTATTAAA
** ** *
35969877 TATAATTTATAATCTACTTTATTATTATTAAA
1 TATAAAATATAATCTAAATAATTATTATTAAA
35969909 CTGCAATACA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (32 bp):
TATAAAATATAATCTAAATAATTATTATTAAA
Found at i:35975471 original size:49 final size:49
Alignment explanation
Indices: 35975416--35975514 Score: 189
Period size: 49 Copynumber: 2.0 Consensus size: 49
35975406 ATTACGATTA
35975416 CAATATATATTAAAATCCTTAAATTTATAATCCATCATCACAATGAACT
1 CAATATATATTAAAATCCTTAAATTTATAATCCATCATCACAATGAACT
*
35975465 CAATATATATTAAAATCCTTAAATTTATAATCCATCATCACAGTGAACT
1 CAATATATATTAAAATCCTTAAATTTATAATCCATCATCACAATGAACT
35975514 C
1 C
35975515 TACAACTAAT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.43, C:0.19, G:0.03, T:0.34
Consensus pattern (49 bp):
CAATATATATTAAAATCCTTAAATTTATAATCCATCATCACAATGAACT
Found at i:35975926 original size:9 final size:9
Alignment explanation
Indices: 35975912--35976174 Score: 75
Period size: 9 Copynumber: 28.9 Consensus size: 9
35975902 ATGATTAAAT
35975912 TTATAAAAA
1 TTATAAAAA
35975921 TTAT-AAAA
1 TTATAAAAA
35975929 TTATAAAAA
1 TTATAAAAA
* *
35975938 -AATGGAAAA
1 TTAT-AAAAA
35975947 -TATATAAAA
1 TTATA-AAAA
*
35975956 TTATTATAAA
1 TTA-TAAAAA
* *
35975966 TGAAAAAAA
1 TTATAAAAA
35975975 TTATAAAAA
1 TTATAAAAA
* **
35975984 ATATAATTCA
1 TTATAA-AAA
35975994 TTA-AAAAA
1 TTATAAAAA
*
35976002 TTACAAAAA
1 TTATAAAAA
*
35976011 -CATTAAAAA
1 TTA-TAAAAA
35976020 TTATTAAAAA
1 TTA-TAAAAA
*
35976030 --A-ACAAA
1 TTATAAAAA
35976036 --ATAAAAA
1 TTATAAAAA
* *
35976043 TTATATAAT
1 TTATAAAAA
35976052 TTATGAAAAA
1 TTAT-AAAAA
*
35976062 -TATTAAAA
1 TTATAAAAA
* *
35976070 TTGTAAAAG
1 TTATAAAAA
35976079 TTATGAAAAA
1 TTAT-AAAAA
*
35976089 -TATTTAAAA
1 TTA-TAAAAA
*
35976098 -TATAGAAAT
1 TTATA-AAAA
35976107 TTATTAAAAATA
1 TTA-T-AAAA-A
*
35976119 TTTTAAAAAA
1 TTAT-AAAAA
* *
35976129 TCAATAAAAT
1 T-TATAAAAA
35976139 TTATAAAATA
1 TTATAAAA-A
35976149 TTATAAAAA
1 TTATAAAAA
**
35976158 GCATAAAAA
1 TTATAAAAA
*
35976167 TGATAAAA
1 TTATAAAA
35976175 CAAATTAAAA
Statistics
Matches: 186, Mismatches: 45, Indels: 46
0.67 0.16 0.17
Matches are distributed among these distances:
6 5 0.03
7 4 0.02
8 21 0.11
9 97 0.52
10 43 0.23
11 13 0.07
12 3 0.02
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.32
Consensus pattern (9 bp):
TTATAAAAA
Found at i:35975940 original size:19 final size:19
Alignment explanation
Indices: 35975916--35976031 Score: 55
Period size: 19 Copynumber: 6.3 Consensus size: 19
35975906 TTAAATTTAT
35975916 AAAAATTATAAAATTATAA
1 AAAAATTATAAAATTATAA
**
35975935 AAAAA-TGGAAAATATATAA
1 AAAAATTATAAAAT-TATAA
** *
35975954 AATTATTAT-AAA-T-GAA
1 AAAAATTATAAAATTATAA
*
35975970 AAAAATTATAAAA-AATATA
1 AAAAATTATAAAATTATA-A
*** * *
35975989 ATTCATTAAAAAATTACAA
1 AAAAATTATAAAATTATAA
*
35976008 AAACATTA-AAAATTATTAA
1 AAAAATTATAAAATTA-TAA
35976027 AAAAA
1 AAAAA
35976032 CAAAATAAAA
Statistics
Matches: 69, Mismatches: 21, Indels: 14
0.66 0.20 0.13
Matches are distributed among these distances:
16 9 0.13
17 4 0.06
18 14 0.20
19 39 0.57
20 3 0.04
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.28
Consensus pattern (19 bp):
AAAAATTATAAAATTATAA
Found at i:35976030 original size:21 final size:19
Alignment explanation
Indices: 35975992--35976033 Score: 57
Period size: 21 Copynumber: 2.1 Consensus size: 19
35975982 AAATATAATT
*
35975992 CATTAAAAAATTACAAAAA
1 CATTAAAAAATTAAAAAAA
35976011 CATTAAAAATTATTAAAAAAA
1 CATTAAAAA--ATTAAAAAAA
35976032 CA
1 CA
35976034 AAATAAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 9 0.45
21 11 0.55
ACGTcount: A:0.67, C:0.10, G:0.00, T:0.24
Consensus pattern (19 bp):
CATTAAAAAATTAAAAAAA
Found at i:35976110 original size:28 final size:28
Alignment explanation
Indices: 35976039--35976156 Score: 109
Period size: 27 Copynumber: 4.1 Consensus size: 28
35976029 AAACAAAATA
*
35976039 AAAATTATATAATTTATGAAAAATA-TT
1 AAAATTATAAAATTTATGAAAAATATTT
* *
35976066 AAAATTGTAAAAGTTATGAAAAATATTT
1 AAAATTATAAAATTTATGAAAAATATTT
*
35976094 AAAA-TATAGAAATTTATTAAAAATATTTT
1 AAAATTATA-AAATTTATGAAAAATA-TTT
*
35976123 AAAAAATCAATAAAATTTAT--AAAATATTAT
1 --AAAAT-TATAAAATTTATGAAAAATATT-T
35976153 AAAA
1 AAAA
35976157 AGCATAAAAA
Statistics
Matches: 76, Mismatches: 7, Indels: 15
0.78 0.07 0.15
Matches are distributed among these distances:
27 25 0.33
28 24 0.32
29 5 0.07
30 7 0.09
31 4 0.05
32 8 0.11
33 3 0.04
ACGTcount: A:0.58, C:0.01, G:0.04, T:0.36
Consensus pattern (28 bp):
AAAATTATAAAATTTATGAAAAATATTT
Found at i:35976165 original size:28 final size:30
Alignment explanation
Indices: 35976103--35976174 Score: 76
Period size: 28 Copynumber: 2.4 Consensus size: 30
35976093 TAAAATATAG
* *
35976103 AAATTTATTAAAAATATTTTAAAAAATCAATA
1 AAATTTA-T-AAAATATTATAAAAAAGCAATA
35976135 AAATTTATAAAATATTAT-AAAAAGC-ATA
1 AAATTTATAAAATATTATAAAAAAGCAATA
* *
35976163 AAAATGATAAAA
1 AAATTTATAAAA
35976175 CAAATTAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
28 13 0.36
29 6 0.17
30 9 0.25
31 1 0.03
32 7 0.19
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32
Consensus pattern (30 bp):
AAATTTATAAAATATTATAAAAAAGCAATA
Found at i:35976704 original size:174 final size:171
Alignment explanation
Indices: 35976410--35976759 Score: 603
Period size: 174 Copynumber: 2.0 Consensus size: 171
35976400 TGGCAATTTG
* *
35976410 TTGT-ACTTGTCCACTACGAATCTCTCTAAAGCTTGGTGATAGTGGAGTGTTTTGAGATGTAAAC
1 TTGTAACTTGTCCACTACGAATCTCTCTAAAACTTGGTGATAGTAGAGTGTTTTGAGATGTAAAC
35976474 TAAGGTGAGGAAATAAATAGAGAACGTAAGTGACAATCGAAACTGTGTATATAAAATTGTAGATT
66 TAAGGTGAGGAAATAAATAGAGAACGTAAGTGACAATCGAAACTGTGTATATAAAATTGTAGA--
*
35976539 TTCTTTTTTATATTTTTGTAATTTAATATTATTATTTGAATAAT
129 TT-TTTTTTATATTTTTGGAATTTAATATTATTATTTGAATAAT
*
35976583 TTGTAACTTGTCCACTACGGATCTCTCTAAAACTTGGTGATAGTAGAGTGTTTTGAGATGTAAAC
1 TTGTAACTTGTCCACTACGAATCTCTCTAAAACTTGGTGATAGTAGAGTGTTTTGAGATGTAAAC
* *
35976648 TAAGGTGAGGAAATAAATAGAGAAGGTAAGTGACAATCGAGACTGTGTATATAAAATTGTAGATT
66 TAAGGTGAGGAAATAAATAGAGAACGTAAGTGACAATCGAAACTGTGTATATAAAATTGTAGATT
*
35976713 TTTTTTATATTTTTGGAATTTAATATTATTTTTTGAATAAT
131 TTTTTTATATTTTTGGAATTTAATATTATTATTTGAATAAT
35976754 TTGTAA
1 TTGTAA
35976760 TAATATTTTT
Statistics
Matches: 169, Mismatches: 7, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
171 45 0.27
172 2 0.01
173 4 0.02
174 118 0.70
ACGTcount: A:0.34, C:0.08, G:0.19, T:0.39
Consensus pattern (171 bp):
TTGTAACTTGTCCACTACGAATCTCTCTAAAACTTGGTGATAGTAGAGTGTTTTGAGATGTAAAC
TAAGGTGAGGAAATAAATAGAGAACGTAAGTGACAATCGAAACTGTGTATATAAAATTGTAGATT
TTTTTTATATTTTTGGAATTTAATATTATTATTTGAATAAT
Found at i:35976854 original size:9 final size:9
Alignment explanation
Indices: 35976835--35976909 Score: 57
Period size: 9 Copynumber: 8.6 Consensus size: 9
35976825 AATTTCTATA
35976835 TTTTA-TAT
1 TTTTATTAT
35976843 TTTTATTAT
1 TTTTATTAT
*
35976852 TTTTATAAT
1 TTTTATTAT
* *
35976861 TTTAATAAT
1 TTTTATTAT
*
35976870 TTTCA--AT
1 TTTTATTAT
35976877 TTTTATTAT
1 TTTTATTAT
* *
35976886 TTTTAATGT
1 TTTTATTAT
*
35976895 TTTTTTCTAT
1 TTTTAT-TAT
35976905 TTTTA
1 TTTTA
35976910 ATATATATTT
Statistics
Matches: 53, Mismatches: 10, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
7 6 0.11
8 5 0.09
9 36 0.68
10 6 0.11
ACGTcount: A:0.25, C:0.03, G:0.01, T:0.71
Consensus pattern (9 bp):
TTTTATTAT
Found at i:35976855 original size:17 final size:17
Alignment explanation
Indices: 35976835--35976909 Score: 71
Period size: 18 Copynumber: 4.3 Consensus size: 17
35976825 AATTTCTATA
35976835 TTTTATATTTTTATTAT
1 TTTTATATTTTTATTAT
* *
35976852 TTTTATAATTTTAATAAT
1 TTTTAT-ATTTTTATTAT
*
35976870 TTTCA-ATTTTTATTAT
1 TTTTATATTTTTATTAT
* *
35976886 TTTTAATGTTTTTTTCTAT
1 TTTT-ATATTTTTAT-TAT
35976905 TTTTA
1 TTTTA
35976910 ATATATATTT
Statistics
Matches: 46, Mismatches: 8, Indels: 7
0.75 0.13 0.11
Matches are distributed among these distances:
16 12 0.26
17 7 0.15
18 20 0.43
19 7 0.15
ACGTcount: A:0.25, C:0.03, G:0.01, T:0.71
Consensus pattern (17 bp):
TTTTATATTTTTATTAT
Found at i:35976856 original size:34 final size:35
Alignment explanation
Indices: 35976801--35976891 Score: 93
Period size: 34 Copynumber: 2.7 Consensus size: 35
35976791 ATTTGCAATT
* *
35976801 TTTTATA-TTTTATAAAATTTTAAGAATTTCT-AT-A
1 TTTTATATTTTTAT-TATTTTTAAGAATTT-TAATAA
*
35976835 TTTTATATTTTTATTATTTTT-ATAATTTTAATAA
1 TTTTATATTTTTATTATTTTTAAGAATTTTAATAA
35976869 TTTTCA-ATTTTTATTATTTTTAA
1 TTTT-ATATTTTTATTATTTTTAA
35976892 TGTTTTTTTC
Statistics
Matches: 49, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
32 1 0.02
33 8 0.16
34 32 0.65
35 8 0.16
ACGTcount: A:0.33, C:0.02, G:0.01, T:0.64
Consensus pattern (35 bp):
TTTTATATTTTTATTATTTTTAAGAATTTTAATAA
Found at i:35976862 original size:42 final size:43
Alignment explanation
Indices: 35976800--35976890 Score: 116
Period size: 42 Copynumber: 2.1 Consensus size: 43
35976790 TATTTGCAAT
*
35976800 TTTTTATATTTTATAAAATTTTAAGAA-TTTCTATATTTTA-TA
1 TTTTTATATTTTATAAAATTTTAAGAATTTTCAAT-TTTTATTA
* *
35976842 TTTTTATTATTTT-TATAATTTTAATAATTTTCAATTTTTATTA
1 TTTTTA-TATTTTATAAAATTTTAAGAATTTTCAATTTTTATTA
35976885 TTTTTA
1 TTTTTA
35976891 ATGTTTTTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
42 23 0.53
43 20 0.47
ACGTcount: A:0.32, C:0.02, G:0.01, T:0.65
Consensus pattern (43 bp):
TTTTTATATTTTATAAAATTTTAAGAATTTTCAATTTTTATTA
Found at i:35980666 original size:42 final size:40
Alignment explanation
Indices: 35980553--35980786 Score: 270
Period size: 42 Copynumber: 5.6 Consensus size: 40
35980543 TCTTTGAATG
* *
35980553 TAAGGGGTTGCTAAGTGCAGATTCCCCGTGTCATTGATTA
1 TAAGGGGTTGCTAAGTGCTGATTCCCCGTATCATTGATTA
* * * *
35980593 TAAGGTGGTTTCGAAGTGCTGATTCCACCGTATTATTGATTG
1 TAAGG-GGTTGCTAAGTGCTGATTCC-CCGTATCATTGATTA
* *
35980635 TGAAAGGGGTTGCTATGTGCCGATTCCCCGTATCATTGATTA
1 T--AAGGGGTTGCTAAGTGCTGATTCCCCGTATCATTGATTA
* *
35980677 TAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCCTTGATTG
1 TAAGG-GGTTGCTAAGTGCTGATTCC-CCGTATCATTGATTA
*
35980719 TGAAAGGGGTTGCTATGTGCTGATTCCCCGTATCATTGATTA
1 T--AAGGGGTTGCTAAGTGCTGATTCCCCGTATCATTGATTA
* *
35980761 TAAGGTGGTTGCCAAGTGCTAATTCC
1 TAAGG-GGTTGCTAAGTGCTGATTCC
35980787 ACCGGGATCC
Statistics
Matches: 163, Mismatches: 22, Indels: 17
0.81 0.11 0.08
Matches are distributed among these distances:
40 13 0.08
41 52 0.32
42 55 0.34
43 35 0.21
44 8 0.05
ACGTcount: A:0.21, C:0.18, G:0.26, T:0.35
Consensus pattern (40 bp):
TAAGGGGTTGCTAAGTGCTGATTCCCCGTATCATTGATTA
Found at i:35980695 original size:84 final size:84
Alignment explanation
Indices: 35980554--35980790 Score: 384
Period size: 84 Copynumber: 2.8 Consensus size: 84
35980544 CTTTGAATGT
* * * *
35980554 AAGGGGTTGCTAAGTGCAGATTCCCCGTGTCATTGATTATAAGGTGGTTTCGAAGTGCTGATTCC
1 AAGGGGTTGCTATGTGCAGATTCCCCGTATCATTGATTATAAGGTGGTTGCCAAGTGCTGATTCC
*
35980619 ACCGTATTATTGATTGTGA
66 ACCGTATCATTGATTGTGA
* *
35980638 AAGGGGTTGCTATGTGCCGATTCCCCGTATCATTGATTATAAGGTGGTTGCTAAGTGCTGATTCC
1 AAGGGGTTGCTATGTGCAGATTCCCCGTATCATTGATTATAAGGTGGTTGCCAAGTGCTGATTCC
*
35980703 ACCGTATCCTTGATTGTGA
66 ACCGTATCATTGATTGTGA
* *
35980722 AAGGGGTTGCTATGTGCTGATTCCCCGTATCATTGATTATAAGGTGGTTGCCAAGTGCTAATTCC
1 AAGGGGTTGCTATGTGCAGATTCCCCGTATCATTGATTATAAGGTGGTTGCCAAGTGCTGATTCC
35980787 ACCG
66 ACCG
35980791 GGATCCTTTG
Statistics
Matches: 143, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
84 143 1.00
ACGTcount: A:0.22, C:0.18, G:0.27, T:0.34
Consensus pattern (84 bp):
AAGGGGTTGCTATGTGCAGATTCCCCGTATCATTGATTATAAGGTGGTTGCCAAGTGCTGATTCC
ACCGTATCATTGATTGTGA
Found at i:35989576 original size:16 final size:16
Alignment explanation
Indices: 35989555--35989587 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
35989545 ATTTAACCCA
35989555 AATT-AAATTAGATTAT
1 AATTAAAATTA-ATTAT
35989571 AATTAAAATTAATTAT
1 AATTAAAATTAATTAT
35989587 A
1 A
35989588 TTATGAATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (16 bp):
AATTAAAATTAATTAT
Found at i:35989581 original size:22 final size:22
Alignment explanation
Indices: 35989554--35989598 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
35989544 TATTTAACCC
35989554 AAATTAAATTAGATTAT-AATTA
1 AAATT-AATTAGATTATGAATTA
*
35989576 AAATTAATTATATTATGAATTA
1 AAATTAATTAGATTATGAATTA
35989598 A
1 A
35989599 TAAAAAAACT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 10 0.48
22 11 0.52
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.42
Consensus pattern (22 bp):
AAATTAATTAGATTATGAATTA
Found at i:35989743 original size:10 final size:10
Alignment explanation
Indices: 35989724--35989770 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
35989714 ATATCTATCG
35989724 AAAA-TAATA
1 AAAATTAATA
35989733 AAAATTAATA
1 AAAATTAATA
*
35989743 AAAATTTGATA
1 AAAA-TTAATA
*
35989754 TAAAATTAATT
1 -AAAATTAATA
35989765 AAAATT
1 AAAATT
35989771 CAACATGTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
9 4 0.12
10 15 0.47
11 9 0.28
12 4 0.12
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (10 bp):
AAAATTAATA
Found at i:35996588 original size:13 final size:13
Alignment explanation
Indices: 35996570--35996595 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
35996560 CTACTCAATC
35996570 ACTACCCTCTAAT
1 ACTACCCTCTAAT
35996583 ACTACCCTCTAAT
1 ACTACCCTCTAAT
35996596 TTTTCCTATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.38, G:0.00, T:0.31
Consensus pattern (13 bp):
ACTACCCTCTAAT
Found at i:36002519 original size:8 final size:8
Alignment explanation
Indices: 36002506--36002533 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
36002496 CACGACAAAC
36002506 CTTTATTT
1 CTTTATTT
36002514 CTTTATTT
1 CTTTATTT
36002522 CTTTATTT
1 CTTTATTT
36002530 CTTT
1 CTTT
36002534 CTTTGAATCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.11, C:0.14, G:0.00, T:0.75
Consensus pattern (8 bp):
CTTTATTT
Found at i:36006657 original size:20 final size:21
Alignment explanation
Indices: 36006617--36006656 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
36006607 CTTGAGGATA
*
36006617 AAATTTTTACTTTCAAAAAAT
1 AAATTTGTACTTTCAAAAAAT
*
36006638 AAATTTGTACTTTTAAAAA
1 AAATTTGTACTTTCAAAAA
36006657 TTTTATGTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.47, C:0.07, G:0.03, T:0.42
Consensus pattern (21 bp):
AAATTTGTACTTTCAAAAAAT
Found at i:36013255 original size:49 final size:47
Alignment explanation
Indices: 36013176--36013774 Score: 937
Period size: 47 Copynumber: 12.6 Consensus size: 47
36013166 TATTTGAATA
*
36013176 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
36013223 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
36013272 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
36013321 AATGTGAAAGTGTGTATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
36013368 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCTGATATGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
36013417 AATGTGAAAGTGTATATATGTGATAAGGTCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
36013464 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
36013513 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
36013560 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGTTGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
36013607 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
36013654 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
36013701 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
36013748 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
36013775 TCCCGAAGGG
Statistics
Matches: 513, Mismatches: 33, Indels: 12
0.92 0.06 0.02
Matches are distributed among these distances:
47 332 0.65
49 181 0.35
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:36013284 original size:96 final size:94
Alignment explanation
Indices: 36013176--36013774 Score: 937
Period size: 96 Copynumber: 6.3 Consensus size: 94
36013166 TATTTGAATA
*
36013176 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
* *
36013241 TATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
*
36013272 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
36013337 TATGTGATAAGGCCGAATGGCCAATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
* *
36013368 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCTGATATGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
36013433 TATGTGATAAGGTCGAATGGCCAATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
36013464 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * *
36013529 TATGTGATAAGGCCTAATAGCCGATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
* *
36013560 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGTTGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* **
36013625 TGTGATAAGGCCTAATGGCTGATGTGATG
66 TGTGATAAGGCCGAATGGCCAATGTGATG
36013654 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * *
36013719 TGTGACAGGGCCGAGTGGCCAACGTGATG
66 TGTGATAAGGCCGAATGGCCAATGTGATG
* *
36013748 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
36013775 TCCCGAAGGG
Statistics
Matches: 472, Mismatches: 29, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
94 188 0.40
96 238 0.50
98 46 0.10
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (94 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:36013993 original size:37 final size:37
Alignment explanation
Indices: 36013892--36013993 Score: 177
Period size: 37 Copynumber: 2.8 Consensus size: 37
36013882 CCGAGCTCTA
*
36013892 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
36013929 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
* *
36013966 AAGACCCGATAACTTCGTGTGGAGATTT
1 AAGACCCGATGACTACGTGTGGAGATTT
36013994 CGTCTGAGCT
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
Found at i:36015463 original size:17 final size:18
Alignment explanation
Indices: 36015443--36015476 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
36015433 TACATTTTTT
36015443 TATAT-ACATTATTTTAC
1 TATATAACATTATTTTAC
*
36015460 TATATAATATTATTTTA
1 TATATAACATTATTTTA
36015477 AGTGTTAACA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (18 bp):
TATATAACATTATTTTAC
Found at i:36020190 original size:36 final size:37
Alignment explanation
Indices: 36020143--36020220 Score: 113
Period size: 36 Copynumber: 2.1 Consensus size: 37
36020133 TTATTACGAA
* * *
36020143 GTCTTACCCGGACATAATCTCCACACGAAGTTATC-G
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
36020179 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
36020216 GTCTT
1 GTCTT
36020221 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 31 0.84
37 6 0.16
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:36020496 original size:47 final size:47
Alignment explanation
Indices: 36020339--36020792 Score: 801
Period size: 47 Copynumber: 9.7 Consensus size: 47
36020329 CCCTTCGGGA
* * * *
36020339 CTTATCACATTTATACACTTTCACATCCATCACGTTGG---TTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36020383 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36020429 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36020476 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36020523 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36020570 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36020617 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36020664 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36020711 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
36020758 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
36020793 AGAATCCTAA
Statistics
Matches: 398, Mismatches: 7, Indels: 7
0.97 0.02 0.02
Matches are distributed among these distances:
44 34 0.09
46 47 0.12
47 317 0.80
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36024716 original size:40 final size:40
Alignment explanation
Indices: 36024672--36025052 Score: 591
Period size: 40 Copynumber: 9.8 Consensus size: 40
36024662 CCAGCATGAT
* * * * *
36024672 TGCTCTTCGAGACCTAACCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** * *
36024712 TGCTCTTCGGGGTTTATCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
36024752 TGCTCCTC-GGACTTAG-CCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
36024790 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
36024830 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
36024870 TGCTCTTC-GGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
36024909 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
36024949 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
36024989 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCAC-AA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
36025028 T--TCTTC---ACTTAGCCCGGATATATCA
1 TGCTCTTCGGGACTTAGCCCGGATATATCA
36025053 ATCATGTACA
Statistics
Matches: 322, Mismatches: 16, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
34 19 0.06
37 5 0.02
38 29 0.09
39 54 0.17
40 215 0.67
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:36024943 original size:119 final size:119
Alignment explanation
Indices: 36024672--36025052 Score: 596
Period size: 119 Copynumber: 3.3 Consensus size: 119
36024662 CCAGCATGAT
* * * * * ** * *
36024672 TGCTCTTCGAGACCTAACCCGGATATAACACCAGCACGAATGCTCTTCGGGGTTTATCACGGATA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
*
36024737 TATCACTAGCACGAATGCTCCTCGGACTTAG-CCGGATATATCACTAGCACGAA
66 TATCACTAGCACGAATGCTCTTCGGACTTAGCCCGGATATATCACTAGCACGAA
* *
36024790 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
36024855 TATCACTAGCACGAATGCTCTTCGGACTTAGCCCGGATATATCACTAGCACGAA
66 TATCACTAGCACGAATGCTCTTCGGACTTAGCCCGGATATATCACTAGCACGAA
36024909 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
36024974 TATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCAC-AA
66 TATCACTAGCACGAATGCTCTTC-GGACTTAGCCCGGATATATCACTAGCACGAA
36025028 T--TCTTC---ACTTAGCCCGGATATATCA
1 TGCTCTTCGGGACTTAGCCCGGATATATCA
36025053 ATCATGTACA
Statistics
Matches: 247, Mismatches: 14, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
114 19 0.08
117 5 0.02
118 84 0.34
119 111 0.45
120 28 0.11
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.25
Consensus pattern (119 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
TATCACTAGCACGAATGCTCTTCGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:36026322 original size:37 final size:37
Alignment explanation
Indices: 36026262--36026339 Score: 111
Period size: 37 Copynumber: 2.1 Consensus size: 37
36026252 TATTACGAAG
* * *
36026262 TCTTACCCGGACATAATCTCCACACGAAGTTATCGGA
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGA
* *
36026299 TCTTACCCGGACAAAATCCCCACACGTAGTCATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGA
36026336 TCTT
1 TCTT
36026340 TAGAGCTCGG
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.24
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGA
Found at i:36026563 original size:47 final size:47
Alignment explanation
Indices: 36026457--36026817 Score: 611
Period size: 47 Copynumber: 7.7 Consensus size: 47
36026447 GCCTTCGGGA
* * * *
36026457 CTTATCACATTTATACACTTTCACATCCATCACGT-TG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36026502 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36026549 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36026596 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36026645 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36026692 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36026739 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
36026786 CTTATCTCATATATGCA-TGTTCACATCCATCA
1 CTTATCACATATATACACT-TTCACATTCATCA
36026818 TAGAATCCTA
Statistics
Matches: 304, Mismatches: 7, Indels: 8
0.95 0.02 0.03
Matches are distributed among these distances:
45 32 0.11
46 2 0.01
47 223 0.73
49 47 0.15
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36026724 original size:143 final size:143
Alignment explanation
Indices: 36026457--36026817 Score: 610
Period size: 143 Copynumber: 2.6 Consensus size: 143
36026447 GCCTTCGGGA
* * *
36026457 CTTATCACAT-T-TATACACTTTCACATCCATCACGT-TG-CATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
36026518 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
36026583 TCGGCCATTAGGC
131 TCGGCCATTAGGC
36026596 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
36026661 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
36026726 TCGGCCATTAGGC
131 TCGGCCATTAGGC
* *
36026739 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
36026802 A-TGTTCACATCCATCA
66 ACT-TTCACATTCATCA
36026818 TAGAATCCTA
Statistics
Matches: 211, Mismatches: 6, Indels: 8
0.94 0.03 0.04
Matches are distributed among these distances:
139 10 0.05
140 2 0.01
141 88 0.42
142 1 0.00
143 110 0.52
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (143 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:36033752 original size:39 final size:40
Alignment explanation
Indices: 36033651--36033873 Score: 253
Period size: 40 Copynumber: 5.7 Consensus size: 40
36033641 TTGAATGATG
* * *
36033651 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
36033690 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
36033731 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
36033770 TCCGGGTTAAGT-CCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
36033808 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
36033847 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
36033874 AACGAGGAGC
Statistics
Matches: 160, Mismatches: 15, Indels: 16
0.84 0.08 0.08
Matches are distributed among these distances:
38 28 0.17
39 53 0.33
40 69 0.43
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:36033828 original size:78 final size:78
Alignment explanation
Indices: 36033651--36033871 Score: 277
Period size: 78 Copynumber: 2.8 Consensus size: 78
36033641 TTGAATGATG
* * * * *
36033651 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGCTAAG-TCCGAAGGCA-T
*
36033715 TGTGCGAGATACTAAT
63 TGTGCGAGATACTAAA
* *
36033731 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCGAAGGCATTGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCGAAGGCATTGT
*
36033795 GCGAGTTACTAAA
66 GCGAGATACTAAA
* *
36033808 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGT-CCGAAGGCATT
36033872 TGAACGAGGA
Statistics
Matches: 124, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
77 25 0.20
78 44 0.35
79 38 0.31
80 17 0.14
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (78 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCGAAGGCATTGT
GCGAGATACTAAA
Found at i:36040243 original size:40 final size:40
Alignment explanation
Indices: 36040211--36040519 Score: 484
Period size: 40 Copynumber: 7.8 Consensus size: 40
36040201 CCAGCATGAT
* * * *
36040211 TGCTCTTCGAGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** *
36040251 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
36040291 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
36040331 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
36040371 TGCTCTTCGGGAACTTAGCCC--ATATATCACTAGCACGAA
1 TGCTCTTCGGG-ACTTAGCCCGGATATATCACTAGCACGAA
36040410 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
36040450 TGCTCTTCGGGACTTAGCCCGGATATATCA-TA-CATCGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCA-CGAA
36040489 TGCTCTTCGGGACTTAG-CCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
36040520 CTCAATTCTC
Statistics
Matches: 252, Mismatches: 12, Indels: 11
0.92 0.04 0.04
Matches are distributed among these distances:
38 23 0.09
39 53 0.21
40 167 0.66
41 9 0.04
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:36040428 original size:79 final size:79
Alignment explanation
Indices: 36040211--36040519 Score: 464
Period size: 79 Copynumber: 3.9 Consensus size: 79
36040201 CCAGCATGAT
* * * * ** *
36040211 TGCTCTTCGAGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATA
1 TGCTCTTCGGGACTTAGCCC-GATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
36040276 TATCACTAGCACGAA
65 TATCACTAGCACGAA
* *
36040291 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCC-GATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
36040356 TATCACTAGCACGAA
65 TATCACTAGCACGAA
36040371 TGCTCTTCGGGAACTTAGCCC-ATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
1 TGCTCTTCGGG-ACTTAGCCCGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
36040435 TATCACTAGCACGAA
65 TATCACTAGCACGAA
36040450 TGCTCTTCGGGACTTAGCCCGGATATATCA-TA-CATCGAATGCTCTTCGGGACTTAG-CCGGAT
1 TGCTCTTCGGGACTTAGCCC-GATATATCACTAGCA-CGAATGCTCTTCGGGACTTAGCCCGGAT
36040512 ATATCACT
64 ATATCACT
36040520 CTCAATTCTC
Statistics
Matches: 214, Mismatches: 11, Indels: 10
0.91 0.05 0.04
Matches are distributed among these distances:
78 25 0.12
79 91 0.43
80 89 0.42
81 9 0.04
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
TGCTCTTCGGGACTTAGCCCGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
ATCACTAGCACGAA
Found at i:36040429 original size:119 final size:119
Alignment explanation
Indices: 36040211--36040519 Score: 489
Period size: 119 Copynumber: 2.6 Consensus size: 119
36040201 CCAGCATGAT
* * * * **
36040211 TGCTCTTCGAGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGC-CGGATA
36040276 TATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
65 TATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
36040331 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAACTTAGCC-CATA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGG-ACTTAGCCGGATA
*
36040395 TATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
65 TATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
36040450 TGCTCTTCGGGACTTAGCCCGGATATATCA-TA-CATCGAATGCTCTTCGGGACTTAGCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCA-CGAATGCTCTTCGGGACTTAGCCGGATA
36040513 TATCACT
65 TATCACT
36040520 CTCAATTCTC
Statistics
Matches: 175, Mismatches: 11, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
117 10 0.06
118 27 0.15
119 86 0.49
120 47 0.27
121 5 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (119 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCGGATAT
ATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:36041788 original size:37 final size:37
Alignment explanation
Indices: 36041728--36041805 Score: 111
Period size: 37 Copynumber: 2.1 Consensus size: 37
36041718 TATTACGAAG
* * *
36041728 TCTTACCCGGACATAATCTCCACACGAAGTTATCGGA
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGA
* *
36041765 TCTTACCCGGACAAAATCCCCACACGTAGTCATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGA
36041802 TCTT
1 TCTT
36041806 TAGAGCTCGG
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.24
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGA
Found at i:36042018 original size:47 final size:47
Alignment explanation
Indices: 36041924--36042337 Score: 706
Period size: 47 Copynumber: 8.7 Consensus size: 47
36041914 CCCTTCGGGA
* * * *
36041924 CTTATCACATTTATACACTTTCACA-TCATCACGTTGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36041970 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36042017 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36042064 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36042113 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36042160 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36042209 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36042256 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
36042303 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
36042338 AGAATCCTAA
Statistics
Matches: 355, Mismatches: 7, Indels: 11
0.95 0.02 0.03
Matches are distributed among these distances:
46 25 0.07
47 236 0.66
49 94 0.26
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36042102 original size:96 final size:94
Alignment explanation
Indices: 36041924--36042337 Score: 706
Period size: 96 Copynumber: 4.4 Consensus size: 94
36041914 CCCTTCGGGA
* * * *
36041924 CTTATCACATTTATACACTTTCACA-TCATCACGTTGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
36041988 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
36042017 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
36042082 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
36042113 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
36042178 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
36042209 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
36042274 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* * *
36042303 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
36042338 AGAATCCTAA
Statistics
Matches: 310, Mismatches: 7, Indels: 7
0.96 0.02 0.02
Matches are distributed among these distances:
93 25 0.08
94 95 0.31
96 190 0.61
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:36042221 original size:143 final size:143
Alignment explanation
Indices: 36041924--36042316 Score: 702
Period size: 143 Copynumber: 2.8 Consensus size: 143
36041914 CCCTTCGGGA
* * * *
36041924 CTTATCACATTTATACACTTTCACA-TCATCACGTTGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
36041988 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
36042051 TCGGCCATTAGGC
131 TCGGCCATTAGGC
36042064 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
36042129 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
36042194 CATCGGCCATTAGGC
129 CATCGGCCATTAGGC
36042209 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
36042274 TTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATAT
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
36042317 GCATGTTCAC
Statistics
Matches: 243, Mismatches: 5, Indels: 7
0.95 0.02 0.03
Matches are distributed among these distances:
140 8 0.03
142 16 0.07
143 172 0.71
145 47 0.19
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (143 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:36056844 original size:17 final size:17
Alignment explanation
Indices: 36056822--36056878 Score: 64
Period size: 17 Copynumber: 3.4 Consensus size: 17
36056812 CTACCCCTTC
36056822 TTCCTCACCTACATCTT
1 TTCCTCACCTACATCTT
* *
36056839 TTCCTCCCCAACATC-T
1 TTCCTCACCTACATCTT
*
36056855 TT-CTCATCTACATCTT
1 TTCCTCACCTACATCTT
36056871 CTTCCTCA
1 -TTCCTCA
36056879 TTTGTACCTC
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
15 9 0.28
16 4 0.12
17 15 0.47
18 4 0.12
ACGTcount: A:0.18, C:0.42, G:0.00, T:0.40
Consensus pattern (17 bp):
TTCCTCACCTACATCTT
Found at i:36065863 original size:7 final size:8
Alignment explanation
Indices: 36065830--36065879 Score: 64
Period size: 8 Copynumber: 6.0 Consensus size: 8
36065820 AATAAATATA
36065830 TTTATTTT
1 TTTATTTT
36065838 TTTATTTT
1 TTTATTTT
**
36065846 AAAATATTTT
1 --TTTATTTT
36065856 TTTATTTT
1 TTTATTTT
36065864 TTTATTTT
1 TTTATTTT
36065872 TTTATTTT
1 TTTATTTT
36065880 AAAATAAAGT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
8 30 0.83
10 6 0.17
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (8 bp):
TTTATTTT
Found at i:36073046 original size:14 final size:13
Alignment explanation
Indices: 36073027--36073107 Score: 53
Period size: 15 Copynumber: 6.0 Consensus size: 13
36073017 TATATTTATC
36073027 TAAAATTTAATTTA
1 TAAAATTTAA-TTA
36073041 TAAAATCTATAATTA
1 TAAAAT-T-TAATTA
36073056 TAAATATTT-ATTA
1 TAAA-ATTTAATTA
*
36073069 -AAATTCTATAATTA
1 TAAAAT-T-TAATTA
36073083 TAAATATTT-ATTA
1 TAAA-ATTTAATTA
*
36073096 -AAAATCTAATTA
1 TAAAATTTAATTA
36073108 AACCTTAATT
Statistics
Matches: 55, Mismatches: 3, Indels: 20
0.71 0.04 0.26
Matches are distributed among these distances:
11 4 0.07
12 11 0.20
13 9 0.16
14 12 0.22
15 13 0.24
16 6 0.11
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.46
Consensus pattern (13 bp):
TAAAATTTAATTA
Found at i:36073078 original size:27 final size:26
Alignment explanation
Indices: 36073036--36073103 Score: 111
Period size: 27 Copynumber: 2.6 Consensus size: 26
36073026 CTAAAATTTA
36073036 ATTTA-TAAAATCTATAATTATAAAT
1 ATTTATTAAAATCTATAATTATAAAT
36073061 ATTTATTAAAATTCTATAATTATAAAT
1 ATTTATTAAAA-TCTATAATTATAAAT
36073088 ATTTATTAAAAATCTA
1 ATTTATT-AAAATCTA
36073104 ATTAAACCTT
Statistics
Matches: 40, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
25 5 0.12
26 5 0.12
27 26 0.65
28 4 0.10
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (26 bp):
ATTTATTAAAATCTATAATTATAAAT
Found at i:36076170 original size:20 final size:19
Alignment explanation
Indices: 36076145--36076191 Score: 51
Period size: 20 Copynumber: 2.5 Consensus size: 19
36076135 ATTAATTATT
36076145 TATAAAATTTAATTAGAATA
1 TATAAAATTTAATTA-AATA
* * *
36076165 TATAAACTATATTTAAATA
1 TATAAAATTTAATTAAATA
36076184 TA-AAAATT
1 TATAAAATT
36076192 AAAAATTTGT
Statistics
Matches: 22, Mismatches: 5, Indels: 2
0.76 0.17 0.07
Matches are distributed among these distances:
18 4 0.18
19 6 0.27
20 12 0.55
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.40
Consensus pattern (19 bp):
TATAAAATTTAATTAAATA
Found at i:36092302 original size:89 final size:89
Alignment explanation
Indices: 36092190--36092863 Score: 1098
Period size: 89 Copynumber: 7.6 Consensus size: 89
36092180 GAGCAGGTTG
* * * * * *
36092190 AAAGATAACAGATCATGCCTTCCCATACCGGTGGTGAAGCAGATCGAAGAAAGCAAATCTTATCT
1 AAAGATAACAGATCTTGTCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCT
36092255 TCATGTACTGGCGTGAAGTAGATC
66 TCATGTACTGGCGTGAAGTAGATC
* *
36092279 AAAGATACCAGATCTTGTCTTCCCATACTGGTGGTGAAGCAGATCGAAGAAAGCAGATCTTGTCT
1 AAAGATAACAGATCTTGTCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCT
36092344 TCATGTACTGGCGTGAAGTAGATC
66 TCATGTACTGGCGTGAAGTAGATC
*
36092368 AAAGAT-ACTAGATCTTGTCTTCCCATACTGGTGGTGAAGCAGATCGAAGAAAGCAGATCTTGTC
1 AAAGATAAC-AGATCTTGTCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTC
36092432 TTCATGTACTGGCGTGAAGTAGATC
65 TTCATGTACTGGCGTGAAGTAGATC
* *
36092457 AAAGATACCAGATCTTGTCTTCCCATACTGGTGGCGAAACAAGATCGAAGAAAGCAGATCTTGTC
1 AAAGATAACAGATCTTGTCTTCCCATACTGGTGGCGAAGC-AGATCGAAGAAAGCAGATCTTGTC
36092522 TTCATGTACTGGCGTGAAGTAGATC
65 TTCATGTACTGGCGTGAAGTAGATC
* *
36092547 AAAGATAACAAATCTTGTCTTCCCATACTGGTGGCGAAACAGATCGAAGAAAGCAGATCTTGTCT
1 AAAGATAACAGATCTTGTCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCT
*
36092612 TCATATACTGGCGTGAAGTAGATC
66 TCATGTACTGGCGTGAAGTAGATC
* *
36092636 AAAGATAACATATCTTGTCTTCCCATACTGGTGGCGAAACAGATCGAAGAAAGCAGATCTTGTCT
1 AAAGATAACAGATCTTGTCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCT
*
36092701 TCATGTACTGGCATGAAGTAGATC
66 TCATGTACTGGCGTGAAGTAGATC
* * * **
36092725 AAAGATAACAGATCTTGTTTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAATAGATCTTGTCT
1 AAAGATAACAGATCTTGTCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCT
*
36092790 TCATGTATTGGCGTGAAGTAGATC
66 TCATGTACTGGCGTGAAGTAGATC
* *
36092814 AAATATACCAGATCTTGTCTTCCCATACTGGTGGCGAAGCAGATCGAAGA
1 AAAGATAACAGATCTTGTCTTCCCATACTGGTGGCGAAGCAGATCGAAGA
36092864 TGGCGGATTT
Statistics
Matches: 552, Mismatches: 30, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
88 1 0.00
89 463 0.84
90 88 0.16
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.27
Consensus pattern (89 bp):
AAAGATAACAGATCTTGTCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCT
TCATGTACTGGCGTGAAGTAGATC
Found at i:36092845 original size:357 final size:356
Alignment explanation
Indices: 36092190--36092863 Score: 1116
Period size: 357 Copynumber: 1.9 Consensus size: 356
36092180 GAGCAGGTTG
* * *
36092190 AAAGATAACAGATCATGCCTTCCCATACCGGTGGTGAAGCAGATCGAAGAAAGCAAATCTTATCT
1 AAAGATAACAAATCATGCCTTCCCATACCGGTGGCGAAACAGATCGAAGAAAGCAAATCTTATCT
* * * *
36092255 TCATGTACTGGCGTGAAGTAGATCAAAGATACCAGATCTTGTCTTCCCATACTGGTGGTGAAGCA
66 TCATATACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACTGGTGGCGAAACA
*
36092320 GATCGAAGAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATACTAGATCTTG
131 GATCGAAGAAAGCAGATCTTGTCTTCATGTACTGGCATGAAGTAGATCAAAGATACTAGATCTTG
* *
36092385 TCTTCCCATACTGGTGGTGAAGCAGATCGAAGAAAGCAGATCTTGTCTTCATGTACTGGCGTGAA
196 TCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAACAGATCTTGTCTTCATGTACTGGCGTGAA
36092450 GTAGATCAAAGATACCAGATCTTGTCTTCCCATACTGGTGGCGAAACAAGATCGAAGAAAGCAGA
261 GTAGATCAAAGATACCAGATCTTGTCTTCCCATACTGGTGGCGAAAC-AGATCGAAGAAAGCAGA
36092515 TCTTGTCTTCATGTACTGGCGTGAAGTAGATC
325 TCTTGTCTTCATGTACTGGCGTGAAGTAGATC
* * * * *
36092547 AAAGATAACAAATCTTGTCTTCCCATACTGGTGGCGAAACAGATCGAAGAAAGCAGATCTTGTCT
1 AAAGATAACAAATCATGCCTTCCCATACCGGTGGCGAAACAGATCGAAGAAAGCAAATCTTATCT
*
36092612 TCATATACTGGCGTGAAGTAGATCAAAGATAACATATCTTGTCTTCCCATACTGGTGGCGAAACA
66 TCATATACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACTGGTGGCGAAACA
36092677 GATCGAAGAAAGCAGATCTTGTCTTCATGTACTGGCATGAAGTAGATCAAAGATAAC-AGATCTT
131 GATCGAAGAAAGCAGATCTTGTCTTCATGTACTGGCATGAAGTAGATCAAAGAT-ACTAGATCTT
* * * * *
36092741 GTTTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAATAGATCTTGTCTTCATGTATTGGCGTGA
195 GTCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAACAGATCTTGTCTTCATGTACTGGCGTGA
* *
36092806 AGTAGATCAAATATACCAGATCTTGTCTTCCCATACTGGTGGCGAAGCAGATCGAAGA
260 AGTAGATCAAAGATACCAGATCTTGTCTTCCCATACTGGTGGCGAAACAGATCGAAGA
36092864 TGGCGGATTT
Statistics
Matches: 293, Mismatches: 23, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
356 10 0.03
357 281 0.96
358 2 0.01
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.27
Consensus pattern (356 bp):
AAAGATAACAAATCATGCCTTCCCATACCGGTGGCGAAACAGATCGAAGAAAGCAAATCTTATCT
TCATATACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACTGGTGGCGAAACA
GATCGAAGAAAGCAGATCTTGTCTTCATGTACTGGCATGAAGTAGATCAAAGATACTAGATCTTG
TCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAACAGATCTTGTCTTCATGTACTGGCGTGAA
GTAGATCAAAGATACCAGATCTTGTCTTCCCATACTGGTGGCGAAACAGATCGAAGAAAGCAGAT
CTTGTCTTCATGTACTGGCGTGAAGTAGATC
Found at i:36093014 original size:37 final size:37
Alignment explanation
Indices: 36092973--36093103 Score: 118
Period size: 37 Copynumber: 3.4 Consensus size: 37
36092963 CATCTCTCTG
36092973 AAGTTGCAGTAGAGCAGATCGCATCAGACTTATCTTT
1 AAGTTGCAGTAGAGCAGATCGCATCAGACTTATCTTT
* * * * * * * *
36093010 AAGTTGTAGCAGAACAAATTGAAGCTATAAGTCTTATCTCCCTG
1 AAGTTGCAGTAGAGCAGA-T--CGC-ATCAGACTTATCT---TT
36093054 AAGTTGCAGTAGAGCAGATCGCATCAGACTTATCTTT
1 AAGTTGCAGTAGAGCAGATCGCATCAGACTTATCTTT
*
36093091 AAGTTGTAGTAGA
1 AAGTTGCAGTAGA
36093104 ACAAATTGAA
Statistics
Matches: 70, Mismatches: 17, Indels: 14
0.69 0.17 0.14
Matches are distributed among these distances:
37 27 0.39
38 1 0.01
40 13 0.19
41 13 0.19
43 1 0.01
44 15 0.21
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (37 bp):
AAGTTGCAGTAGAGCAGATCGCATCAGACTTATCTTT
Found at i:36093047 original size:41 final size:41
Alignment explanation
Indices: 36093001--36093129 Score: 131
Period size: 41 Copynumber: 3.2 Consensus size: 41
36092991 TCGCATCAGA
*
36093001 CTTATCTTTAAGTTGTAGCAGAACAAATTGAAGCTATAAGT
1 CTTATCTTTAAGTTGTAGTAGAACAAATTGAAGCTATAAGT
* * * * * * *
36093042 CTTATCTCCCTGAAGTTGCAGTAGAGCAGA-T--CGC-ATCAGA
1 CTTATCT---TTAAGTTGTAGTAGAACAAATTGAAGCTATAAGT
36093082 CTTATCTTTAAGTTGTAGTAGAACAAATTGAAGCTATAAGT
1 CTTATCTTTAAGTTGTAGTAGAACAAATTGAAGCTATAAGT
36093123 CTTATCT
1 CTTATCT
36093130 CCCTGAAGTT
Statistics
Matches: 66, Mismatches: 15, Indels: 14
0.69 0.16 0.15
Matches are distributed among these distances:
37 16 0.24
38 1 0.02
40 13 0.20
41 20 0.30
43 1 0.02
44 15 0.23
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Consensus pattern (41 bp):
CTTATCTTTAAGTTGTAGTAGAACAAATTGAAGCTATAAGT
Found at i:36093064 original size:81 final size:81
Alignment explanation
Indices: 36092964--36093153 Score: 353
Period size: 81 Copynumber: 2.3 Consensus size: 81
36092954 CGCATATCTC
*
36092964 ATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATCAGACTTATCTTTAAGTTGTAGCAGAACAAAT
1 ATCTCCCTGAAGTTGCAGTAGAGCAGATCGCATCAGACTTATCTTTAAGTTGTAGCAGAACAAAT
36093029 TGAAGCTATAAGTCTT
66 TGAAGCTATAAGTCTT
*
36093045 ATCTCCCTGAAGTTGCAGTAGAGCAGATCGCATCAGACTTATCTTTAAGTTGTAGTAGAACAAAT
1 ATCTCCCTGAAGTTGCAGTAGAGCAGATCGCATCAGACTTATCTTTAAGTTGTAGCAGAACAAAT
36093110 TGAAGCTATAAGTCTT
66 TGAAGCTATAAGTCTT
*
36093126 ATCTCCCTGAAGTTGCAGTGGAGCAGAT
1 ATCTCCCTGAAGTTGCAGTAGAGCAGAT
36093154 TAAAGATAGC
Statistics
Matches: 106, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
81 106 1.00
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (81 bp):
ATCTCCCTGAAGTTGCAGTAGAGCAGATCGCATCAGACTTATCTTTAAGTTGTAGCAGAACAAAT
TGAAGCTATAAGTCTT
Found at i:36101431 original size:50 final size:50
Alignment explanation
Indices: 36101320--36101603 Score: 273
Period size: 50 Copynumber: 5.6 Consensus size: 50
36101310 CAAAGCTATA
* ** * * * * *
36101320 TCCCAGACATAGTCTTACATGGGATGTTTCTTGTA-CTGCCAATGCCATA
1 TCCCAGACATGGTCTTACATGGGACCTCTCATATAGGTGCCAATGCCATG
* * * ** *
36101369 TCCTAGATATGGTCTTACATGAGAGTTCTCATATAGGTGCCCATGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATATAGGTGCCAATGCCATG
** * *
36101419 TCCCAGACATGGTCTTACGGGGGACCTCTCATATTGGTGCCAACGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATATAGGTGCCAATGCCATG
* * * * * *
36101469 TCCCAAACATGGTCTTACATGGGACCTCTCATCTCGGTACTAATGGCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATATAGGTGCCAATGCCATG
*
36101519 TCCCAGACATGGTCTTACATGGGACCTCTCATAATCTCAATGATGCCAATGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCAT-A--T--A-GGTGCCAATGCCATG
*
36101575 TCCCAGACATGGTCTTACATGGGATCTCT
1 TCCCAGACATGGTCTTACATGGGACCTCT
36101604 TTACCCAAAT
Statistics
Matches: 189, Mismatches: 39, Indels: 7
0.80 0.17 0.03
Matches are distributed among these distances:
49 26 0.14
50 123 0.65
53 1 0.01
56 39 0.21
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.29
Consensus pattern (50 bp):
TCCCAGACATGGTCTTACATGGGACCTCTCATATAGGTGCCAATGCCATG
Found at i:36114373 original size:13 final size:13
Alignment explanation
Indices: 36114357--36114409 Score: 79
Period size: 13 Copynumber: 4.1 Consensus size: 13
36114347 TTTAAGCCAA
36114357 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
*
36114370 ACTTCTCAAAAGC
1 ACTTTTCAAAAGC
* *
36114383 ACTTTTCCACAGC
1 ACTTTTCAAAAGC
36114396 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
36114409 A
1 A
36114410 TTGCCAAACT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 34 1.00
ACGTcount: A:0.36, C:0.28, G:0.08, T:0.28
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:36121068 original size:46 final size:46
Alignment explanation
Indices: 36120960--36121121 Score: 251
Period size: 46 Copynumber: 3.6 Consensus size: 46
36120950 TACATATGAT
*
36120960 CACTTATCAC-TTGTCC-C-TGATCAGATAAGTGTAGCT-AGGCTAC
1 CACTTATCACTTTG-CCACTTGATCAGATAAGTGTAGCTAAAGCTAC
*
36121003 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGCCACTTGATCAGATAAGTGTAGCTAAAGCTAC
36121049 CACTTATCACTTTGCCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGCCACTTGATCAGATAAGTGTAGCTAAAGCTAC
* *
36121095 CACTTATCACTTTGTCACTGGATCAGA
1 CACTTATCACTTTGCCACTTGATCAGA
36121122 AGTACTCAAA
Statistics
Matches: 110, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
43 11 0.10
44 4 0.04
45 19 0.17
46 76 0.69
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.31
Consensus pattern (46 bp):
CACTTATCACTTTGCCACTTGATCAGATAAGTGTAGCTAAAGCTAC
Found at i:36126463 original size:42 final size:42
Alignment explanation
Indices: 36126412--36126499 Score: 158
Period size: 42 Copynumber: 2.1 Consensus size: 42
36126402 ATTATTTAAT
*
36126412 TTTTCAATTTATTGAAGTGTTAATATTTTATACGAATTAAAA
1 TTTTCAATTTATTAAAGTGTTAATATTTTATACGAATTAAAA
*
36126454 TTTTCAATTTATTAAAGTGTTAATATTTTATACGAATTAAAT
1 TTTTCAATTTATTAAAGTGTTAATATTTTATACGAATTAAAA
36126496 TTTT
1 TTTT
36126500 AAGAAAATAT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.36, C:0.05, G:0.08, T:0.51
Consensus pattern (42 bp):
TTTTCAATTTATTAAAGTGTTAATATTTTATACGAATTAAAA
Found at i:36130967 original size:43 final size:42
Alignment explanation
Indices: 36130887--36130975 Score: 97
Period size: 43 Copynumber: 2.1 Consensus size: 42
36130877 CACAATTTGG
*
36130887 CACACAGCATGCGAAACGATCGTGTTACCCAAGTTCAAATACA
1 CACACAGCATGCGAAACGATCGTGTGACCCAAGTTC-AATACA
* * * * * * *
36130930 CACACAGCCTGCGACACGTTCGTGTGCCCCTATTTCAATACT
1 CACACAGCATGCGAAACGATCGTGTGACCCAAGTTCAATACA
36130972 CACA
1 CACA
36130976 TGGGCAGACA
Statistics
Matches: 38, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
42 9 0.24
43 29 0.76
ACGTcount: A:0.30, C:0.33, G:0.16, T:0.21
Consensus pattern (42 bp):
CACACAGCATGCGAAACGATCGTGTGACCCAAGTTCAATACA
Found at i:36134329 original size:10 final size:10
Alignment explanation
Indices: 36134314--36134338 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
36134304 TCTAAATAGA
36134314 TAATTTCAAT
1 TAATTTCAAT
36134324 TAATTTCAAT
1 TAATTTCAAT
36134334 TAATT
1 TAATT
36134339 CATAATTCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (10 bp):
TAATTTCAAT
Found at i:36145129 original size:18 final size:18
Alignment explanation
Indices: 36145106--36145140 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
36145096 AAAGAAAAAC
36145106 GTTTCTTATTCATTTTAA
1 GTTTCTTATTCATTTTAA
*
36145124 GTTTCTTCTTCATTTTA
1 GTTTCTTATTCATTTTA
36145141 CTTTCCATAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.17, C:0.14, G:0.06, T:0.63
Consensus pattern (18 bp):
GTTTCTTATTCATTTTAA
Found at i:36146124 original size:35 final size:35
Alignment explanation
Indices: 36146044--36146126 Score: 103
Period size: 35 Copynumber: 2.4 Consensus size: 35
36146034 TACACACTAT
** * *
36146044 TTGGTGTGTTTCGGTTGGACTAGCTCTTATGAGCT
1 TTGGTGTGTTTCGGTTGGACTAAATCTTATGACCA
**
36146079 TTGGCATGTTTCGGTTGGACTAAATCTTATGACCA
1 TTGGTGTGTTTCGGTTGGACTAAATCTTATGACCA
*
36146114 TTGTTGTGTTTCG
1 TTGGTGTGTTTCG
36146127 TAAAGATAAG
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
35 39 1.00
ACGTcount: A:0.14, C:0.14, G:0.28, T:0.43
Consensus pattern (35 bp):
TTGGTGTGTTTCGGTTGGACTAAATCTTATGACCA
Found at i:36146199 original size:31 final size:32
Alignment explanation
Indices: 36146140--36146200 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 32
36146130 AGATAAGCTC
36146140 TTATGAGCATTGGTGTGTTTGTTTGGTTGGCTT
1 TTATGAGCATTGGTGTG-TTGTTTGGTTGGCTT
36146173 TTATGAGCATATGGTGTG-T-TTTGGTTGG
1 TTATGAGCAT-TGGTGTGTTGTTTGGTTGG
36146201 ATTAACGATG
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
31 9 0.33
32 1 0.04
33 10 0.37
34 7 0.26
ACGTcount: A:0.11, C:0.05, G:0.34, T:0.49
Consensus pattern (32 bp):
TTATGAGCATTGGTGTGTTGTTTGGTTGGCTT
Found at i:36158445 original size:51 final size:51
Alignment explanation
Indices: 36158383--36158487 Score: 192
Period size: 51 Copynumber: 2.1 Consensus size: 51
36158373 GGCTTTTTGG
* *
36158383 TTAGTATTTTTTTTATCTAAAGGACAATTTTCAATTCTGGTTTGGGTCGGT
1 TTAGTAATTTTTTTATCTAAAGGACAATTTTCAATTCTGGTTTGGGTCGAT
36158434 TTAGTAATTTTTTTATCTAAAGGACAATTTTCAATTCTGGTTTGGGTCGAT
1 TTAGTAATTTTTTTATCTAAAGGACAATTTTCAATTCTGGTTTGGGTCGAT
36158485 TTA
1 TTA
36158488 TTTTTCGTTT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.24, C:0.10, G:0.18, T:0.49
Consensus pattern (51 bp):
TTAGTAATTTTTTTATCTAAAGGACAATTTTCAATTCTGGTTTGGGTCGAT
Found at i:36160901 original size:59 final size:58
Alignment explanation
Indices: 36160826--36160944 Score: 157
Period size: 59 Copynumber: 2.0 Consensus size: 58
36160816 GGTTTGAACT
** * * *
36160826 TTTTTTTGGCCAAGTTAAGTCCTGAACTTGGCAATTGTTCTCACATTGGAGCTTAAAC
1 TTTTTTTGGCCAAGTTAAACCCTGAACTTAGCAATTATTCTCACATTGGAGCCTAAAC
* * *
36160884 TTTTTTTGGTCCAAGTTAAACCCTGAATTTAGTAATTATTCTCACATTGGTGCCTAAAC
1 TTTTTTTGG-CCAAGTTAAACCCTGAACTTAGCAATTATTCTCACATTGGAGCCTAAAC
36160943 TT
1 TT
36160945 AGTAATTATT
Statistics
Matches: 52, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
58 9 0.17
59 43 0.83
ACGTcount: A:0.25, C:0.18, G:0.16, T:0.40
Consensus pattern (58 bp):
TTTTTTTGGCCAAGTTAAACCCTGAACTTAGCAATTATTCTCACATTGGAGCCTAAAC
Found at i:36165838 original size:21 final size:21
Alignment explanation
Indices: 36165814--36165866 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
36165804 ACCTCAATTA
*
36165814 TTGTTTTAGGTATCTCAAATG
1 TTGTTATAGGTATCTCAAATG
* *
36165835 TTGTTATAGGTATTTTAAATG
1 TTGTTATAGGTATCTCAAATG
*
36165856 TAGTTATAGGT
1 TTGTTATAGGT
36165867 GTATAATAAC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.26, C:0.04, G:0.21, T:0.49
Consensus pattern (21 bp):
TTGTTATAGGTATCTCAAATG
Found at i:36170649 original size:17 final size:16
Alignment explanation
Indices: 36170622--36170677 Score: 55
Period size: 14 Copynumber: 3.6 Consensus size: 16
36170612 TAGTTTTACA
36170622 TAATATTTTATATAATAT
1 TAATATTTTATA-AA-AT
36170640 TAAT-TTTTATAAAAT
1 TAATATTTTATAAAAT
*
36170655 T-A-ATGTTATAAAAT
1 TAATATTTTATAAAAT
*
36170669 TAAAATTTT
1 TAATATTTT
36170678 GTAATTAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
14 12 0.36
15 4 0.12
16 6 0.18
17 7 0.21
18 4 0.12
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
TAATATTTTATAAAAT
Found at i:36170656 original size:15 final size:15
Alignment explanation
Indices: 36170626--36170671 Score: 58
Period size: 14 Copynumber: 3.1 Consensus size: 15
36170616 TTTACATAAT
*
36170626 ATTTTATATAATATTA
1 ATTTT-TATAAAATTA
36170642 ATTTTTATAAAATTA
1 ATTTTTATAAAATTA
*
36170657 A-TGTTATAAAATTA
1 ATTTTTATAAAATTA
36170671 A
1 A
36170672 AATTTTGTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
14 13 0.46
15 10 0.36
16 5 0.18
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (15 bp):
ATTTTTATAAAATTA
Found at i:36170776 original size:18 final size:19
Alignment explanation
Indices: 36170750--36170787 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
36170740 TGTGTTTGCA
*
36170750 TTGAATTTTCT-AAATTAT
1 TTGAATTTTATGAAATTAT
*
36170768 TTGATTTTTATGAAATTAT
1 TTGAATTTTATGAAATTAT
36170787 T
1 T
36170788 ACAAACATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.32, C:0.03, G:0.08, T:0.58
Consensus pattern (19 bp):
TTGAATTTTATGAAATTAT
Found at i:36170895 original size:17 final size:19
Alignment explanation
Indices: 36170873--36170907 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
36170863 ATGATATTTT
36170873 TTAATT-ATTT-TTTATAG
1 TTAATTAATTTCTTTATAG
36170890 TTAATTAATTTCTTTATA
1 TTAATTAATTTCTTTATA
36170908 ACAATGCCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 4 0.25
19 6 0.38
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (19 bp):
TTAATTAATTTCTTTATAG
Found at i:36171400 original size:59 final size:59
Alignment explanation
Indices: 36171308--36171431 Score: 196
Period size: 59 Copynumber: 2.1 Consensus size: 59
36171298 TTGTACACTT
*
36171308 TGATTTATAGTGGTTCGTCTCAATTGCCTATTTCCACTATCTTAGCTTTCCACGACCAA
1 TGATTTATAGTGGTTCGTCTCAATTGCCTATTTCCACTATCTTAGCTTTCCACCACCAA
* *
36171367 TGATTTGTAGTGGTTTG-CTTCAATTGCCTATTTCCACTATCTTAGCTTTCCACCACCAA
1 TGATTTATAGTGGTTCGTC-TCAATTGCCTATTTCCACTATCTTAGCTTTCCACCACCAA
*
36171426 GGATTT
1 TGATTT
36171432 TTCAATTCAC
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
58 1 0.02
59 59 0.98
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (59 bp):
TGATTTATAGTGGTTCGTCTCAATTGCCTATTTCCACTATCTTAGCTTTCCACCACCAA
Found at i:36172687 original size:18 final size:19
Alignment explanation
Indices: 36172652--36172698 Score: 62
Period size: 18 Copynumber: 2.6 Consensus size: 19
36172642 TAATCACACA
36172652 TATTT-TGTAGAAACCACG
1 TATTTATGTAGAAACCACG
*
36172670 TATTTATGTA-AAATCACG
1 TATTTATGTAGAAACCACG
*
36172688 TATGTATGTAG
1 TATTTATGTAG
36172699 GGACCAACAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 21 0.84
19 4 0.16
ACGTcount: A:0.34, C:0.11, G:0.17, T:0.38
Consensus pattern (19 bp):
TATTTATGTAGAAACCACG
Found at i:36175476 original size:34 final size:33
Alignment explanation
Indices: 36175438--36175551 Score: 120
Period size: 34 Copynumber: 3.3 Consensus size: 33
36175428 TTTTTACTGA
*
36175438 ATTGATTTGTTATAAGCATATTATTTGCTATTGT
1 ATTGATCTGTTATAAGCATATTA-TTGCTATTGT
* *
36175472 ATTGAACTATTATAAGCATATTGATTGCTATTGT
1 ATTGATCTGTTATAAGCATATT-ATTGCTATTGT
* * * * *
36175506 ATTGTTTTGTTAAAAACATAATTAAATGCTATTGT
1 ATTGATCTGTTATAAGCAT-ATT-ATTGCTATTGT
36175541 ATTGATCTGTT
1 ATTGATCTGTT
36175552 TGAGCTTGCC
Statistics
Matches: 65, Mismatches: 13, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
34 42 0.65
35 23 0.35
ACGTcount: A:0.31, C:0.07, G:0.14, T:0.48
Consensus pattern (33 bp):
ATTGATCTGTTATAAGCATATTATTGCTATTGT
Found at i:36179360 original size:46 final size:46
Alignment explanation
Indices: 36179304--36179465 Score: 162
Period size: 46 Copynumber: 3.5 Consensus size: 46
36179294 TTAATATTCT
* * *
36179304 TGTATTCTCGAGTCCACAACATATGCAGGAGCTTGGAACCTAAACC
1 TGTATTCTCGAGTCCGCAACATATGCAGGAGCTCGAAACCTAAACC
* * **
36179350 TGTATGCTCGAGTCCGCAACATATGTAGGAGCTCGAAACCTATTCC
1 TGTATTCTCGAGTCCGCAACATATGCAGGAGCTCGAAACCTAAACC
** * * * ** *
36179396 CCTATTCTCGAGTTCGGAACATATGCAGGAGCTCAAAACCTATTCA
1 TGTATTCTCGAGTCCGCAACATATGCAGGAGCTCGAAACCTAAACC
* **
36179442 TGTATTCTTGAGTCCATAACATAT
1 TGTATTCTCGAGTCCGCAACATAT
36179466 TCAAAAGCTT
Statistics
Matches: 95, Mismatches: 21, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
46 95 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.28
Consensus pattern (46 bp):
TGTATTCTCGAGTCCGCAACATATGCAGGAGCTCGAAACCTAAACC
Found at i:36190186 original size:10 final size:10
Alignment explanation
Indices: 36190171--36190205 Score: 61
Period size: 10 Copynumber: 3.5 Consensus size: 10
36190161 CATTAAATTT
36190171 AAATGAAAGC
1 AAATGAAAGC
*
36190181 AAATGAAAGT
1 AAATGAAAGC
36190191 AAATGAAAGC
1 AAATGAAAGC
36190201 AAATG
1 AAATG
36190206 TAGAACCTCC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.60, C:0.06, G:0.20, T:0.14
Consensus pattern (10 bp):
AAATGAAAGC
Found at i:36190795 original size:27 final size:27
Alignment explanation
Indices: 36190779--36191065 Score: 320
Period size: 27 Copynumber: 10.7 Consensus size: 27
36190769 TTTCATCTCT
*
36190779 TAGGGGTAATTCGGTCATTTTATCCTG
1 TAGGGGTAATTCGGTCATTTTACCCTG
*
36190806 TGGGGGTAATTCGGTCATTTTACCCTG
1 TAGGGGTAATTCGGTCATTTTACCCTG
* *
36190833 TGGGGGTAATTCTGTCATTTTACCCTG
1 TAGGGGTAATTCGGTCATTTTACCCTG
** *
36190860 T-GAGGGTAATTTAGTCATTTTACCCTA
1 TAG-GGGTAATTCGGTCATTTTACCCTG
*
36190887 TAGGGGTAATTCGATCATTTTACCCTG
1 TAGGGGTAATTCGGTCATTTTACCCTG
* *
36190914 T-GAGGGTAATTCTGTCATTTTACCTTG
1 TAG-GGGTAATTCGGTCATTTTACCCTG
*
36190941 TAGGGGTAATTCAGTCATTTTACCCTG
1 TAGGGGTAATTCGGTCATTTTACCCTG
**
36190968 TTA-GGGTAATTTTGTCATTTTA-CCTAG
1 -TAGGGGTAATTCGGTCATTTTACCCT-G
* *
36190995 TGGGGGTAATTCAGTCA--TTACCCTG
1 TAGGGGTAATTCGGTCATTTTACCCTG
* *
36191020 T-GGGGTAATTCGGTTATTTTACCTTG
1 TAGGGGTAATTCGGTCATTTTACCCTG
36191046 T-GGAGGTAATTCGGTCATTT
1 TAGG-GGTAATTCGGTCATTT
36191066 ATTGACCTCT
Statistics
Matches: 225, Mismatches: 24, Indels: 22
0.83 0.09 0.08
Matches are distributed among these distances:
24 13 0.06
25 5 0.02
26 19 0.08
27 184 0.82
28 4 0.02
ACGTcount: A:0.20, C:0.16, G:0.24, T:0.40
Consensus pattern (27 bp):
TAGGGGTAATTCGGTCATTTTACCCTG
Found at i:36190850 original size:54 final size:54
Alignment explanation
Indices: 36190781--36191065 Score: 355
Period size: 54 Copynumber: 5.3 Consensus size: 54
36190771 TCATCTCTTA
* * *
36190781 GGGGTAATTCGGTCATTTTATCCTGTGGGGGTAATTCGGTCATTTTACCCTGTG
1 GGGGTAATTCAGTCATTTTACCCTGTGAGGGTAATTCGGTCATTTTACCCTGTG
* ** * *
36190835 GGGGTAATTCTGTCATTTTACCCTGTGAGGGTAATTTAGTCATTTTACCCTATA
1 GGGGTAATTCAGTCATTTTACCCTGTGAGGGTAATTCGGTCATTTTACCCTGTG
* * *
36190889 GGGGTAATTC-GATCATTTTACCCTGTGAGGGTAATTCTGTCATTTTACCTTGTA
1 GGGGTAATTCAG-TCATTTTACCCTGTGAGGGTAATTCGGTCATTTTACCCTGTG
* **
36190943 GGGGTAATTCAGTCATTTTACCCTGTTAGGGTAATTTTGTCATTTTA-CCTAGTG
1 GGGGTAATTCAGTCATTTTACCCTGTGAGGGTAATTCGGTCATTTTACCCT-GTG
* *
36190997 GGGGTAATTCAGTCA--TTACCCTGTG-GGGTAATTCGGTTATTTTACCTTGTG
1 GGGGTAATTCAGTCATTTTACCCTGTGAGGGTAATTCGGTCATTTTACCCTGTG
* *
36191048 GAGGTAATTCGGTCATTT
1 GGGGTAATTCAGTCATTT
36191066 ATTGACCTCT
Statistics
Matches: 203, Mismatches: 22, Indels: 13
0.85 0.09 0.05
Matches are distributed among these distances:
51 32 0.16
52 11 0.05
53 4 0.02
54 155 0.76
55 1 0.00
ACGTcount: A:0.19, C:0.16, G:0.25, T:0.40
Consensus pattern (54 bp):
GGGGTAATTCAGTCATTTTACCCTGTGAGGGTAATTCGGTCATTTTACCCTGTG
Found at i:36190905 original size:81 final size:81
Alignment explanation
Indices: 36190782--36191065 Score: 357
Period size: 81 Copynumber: 3.5 Consensus size: 81
36190772 CATCTCTTAG
* * *
36190782 GGGTAATTCGGTCATTTTATCCTGTGGGGGTAATTCGGTCATTTTACCCTGTGGGGGTAATTCTG
1 GGGTAATTCAGTCATTTTACCCTGTAGGGGTAATTCGGTCATTTTACCCTGTGGGGGTAATTCTG
36190847 TCATTTTACCCTGTGA
66 TCATTTTACCCTGTGA
* * * *
36190863 GGGTAATTTAGTCATTTTACCCTATAGGGGTAATTCGATCATTTTACCCTGTGAGGGTAATTCTG
1 GGGTAATTCAGTCATTTTACCCTGTAGGGGTAATTCGGTCATTTTACCCTGTGGGGGTAATTCTG
*
36190928 TCATTTTACCTTGT-A
66 TCATTTTACCCTGTGA
**
36190943 GGGGTAATTCAGTCATTTTACCCTGTTA-GGGTAATTTTGTCATTTTA-CCTAGTGGGGGTAATT
1 -GGGTAATTCAGTCATTTTACCCTG-TAGGGGTAATTCGGTCATTTTACCCT-GTGGGGGTAATT
*
36191006 CAGTCA--TTACCCTGTG-
63 CTGTCATTTTACCCTGTGA
* * *
36191022 GGGTAATTCGGTTATTTTACCTTGT-GGAGGTAATTCGGTCATTT
1 GGGTAATTCAGTCATTTTACCCTGTAGG-GGTAATTCGGTCATTT
36191066 ATTGACCTCT
Statistics
Matches: 176, Mismatches: 21, Indels: 15
0.83 0.10 0.07
Matches are distributed among these distances:
77 2 0.01
78 35 0.20
79 8 0.05
80 4 0.02
81 125 0.71
82 2 0.01
ACGTcount: A:0.19, C:0.16, G:0.24, T:0.40
Consensus pattern (81 bp):
GGGTAATTCAGTCATTTTACCCTGTAGGGGTAATTCGGTCATTTTACCCTGTGGGGGTAATTCTG
TCATTTTACCCTGTGA
Found at i:36198836 original size:19 final size:19
Alignment explanation
Indices: 36198814--36198854 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
36198804 ATTGCATTTC
36198814 ATTCA-TTACATTTAGGTTA
1 ATTCATTTACATTTA-GTTA
*
36198833 ATTCATTTGCATTTAGTTA
1 ATTCATTTACATTTAGTTA
36198852 ATT
1 ATT
36198855 ATATTAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.29, C:0.10, G:0.10, T:0.51
Consensus pattern (19 bp):
ATTCATTTACATTTAGTTA
Found at i:36208263 original size:27 final size:27
Alignment explanation
Indices: 36208210--36208269 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
36208200 GTAAACATGA
* *
36208210 GGTAGTCCGTCGGGAAAGTAAAAATAG
1 GGTAGTCCATCAGGAAAGTAAAAATAG
* * *
36208237 GGTAGTCCATCAGGACAGTTAACATAG
1 GGTAGTCCATCAGGAAAGTAAAAATAG
36208264 GGTAGT
1 GGTAGT
36208270 TCGCTGGGAC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.33, C:0.13, G:0.32, T:0.22
Consensus pattern (27 bp):
GGTAGTCCATCAGGAAAGTAAAAATAG
Found at i:36217499 original size:26 final size:23
Alignment explanation
Indices: 36217441--36217488 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
36217431 AATTAGGAGA
36217441 TAGAAATTATTAAAATGTGATTT
1 TAGAAATTATTAAAATGTGATTT
36217464 TAGAAATTATTAAAATGTGATTT
1 TAGAAATTATTAAAATGTGATTT
36217487 TA
1 TA
36217489 TACTTTATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.44, C:0.00, G:0.12, T:0.44
Consensus pattern (23 bp):
TAGAAATTATTAAAATGTGATTT
Found at i:36259817 original size:39 final size:40
Alignment explanation
Indices: 36259748--36259884 Score: 113
Period size: 39 Copynumber: 3.5 Consensus size: 40
36259738 TCGTTCAAGT
* * * **
36259748 CCTTCGGGACATAGCCCGG-TTATAGTAACTCATTC-AATG
1 CCTTCGGGACTTAACCCGGATTATAGAAACTCACACGAA-G
* *
36259787 CCTTCGGGACTTAACCCGGATTTTA-AAACTCGCACGAAG
1 CCTTCGGGACTTAACCCGGATTATAGAAACTCACACGAAG
* * * * *
36259826 CCTTCGGGACTTAACCCGGAAT-TAGTATCTCGCACAAAGG
1 CCTTCGGGACTTAACCCGGATTATAGAAACTCACACGAA-G
36259866 CC-TCGGGACTTAACCCGGA
1 CCTTCGGGACTTAACCCGGA
36259885 ATTAATAACT
Statistics
Matches: 83, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.02
39 72 0.87
40 9 0.11
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAACCCGGATTATAGAAACTCACACGAAG
Found at i:36259852 original size:78 final size:78
Alignment explanation
Indices: 36259748--36259899 Score: 175
Period size: 78 Copynumber: 1.9 Consensus size: 78
36259738 TCGTTCAAGT
* * ** * *
36259748 CCTTCGGGACATAGCCCGGTTATAGTAACTCATTC-AATGCCTTCGGGACTTAACCCGGATTTTA
1 CCTTCGGGACATAACCCGGATATAGTAACTCACACAAAGGCC-TCGGGACTTAACCCGGA-ATTA
36259812 A-AACTCGCACGAAG
64 ATAACTCGCACGAAG
* * *
36259826 CCTTCGGGACTTAACCCGGA-ATTAGTATCTCGCACAAAGGCCTCGGGACTTAACCCGGAATTAA
1 CCTTCGGGACATAACCCGGATA-TAGTAACTCACACAAAGGCCTCGGGACTTAACCCGGAATTAA
36259890 TAACTCGCAC
65 TAACTCGCAC
36259900 AAATACCTTC
Statistics
Matches: 62, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
77 5 0.08
78 52 0.84
79 5 0.08
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (78 bp):
CCTTCGGGACATAACCCGGATATAGTAACTCACACAAAGGCCTCGGGACTTAACCCGGAATTAAT
AACTCGCACGAAG
Found at i:36259885 original size:39 final size:38
Alignment explanation
Indices: 36259786--36259911 Score: 155
Period size: 39 Copynumber: 3.2 Consensus size: 38
36259776 CTCATTCAAT
* * *
36259786 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAA
1 GCCTTCGGGACTTAACCCGGA-ATTATAACTCGCACAAA
*
36259825 GCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAA
1 GCCTTCGGGACTTAACCCGGAATTA-TAACTCGCACAAA
36259864 GGCC-TCGGGACTTAACCCGGAATTAATAACTCGCACAAA
1 -GCCTTCGGGACTTAACCCGGAATT-ATAACTCGCACAAA
*
36259903 TACCTTCGG
1 -GCCTTCGG
36259912 ATCTTAGTCC
Statistics
Matches: 76, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
38 3 0.04
39 65 0.86
40 8 0.11
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (38 bp):
GCCTTCGGGACTTAACCCGGAATTATAACTCGCACAAA
Found at i:36260974 original size:14 final size:14
Alignment explanation
Indices: 36260955--36260981 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
36260945 AAAGGAAGCA
36260955 TTTTTTTTTCTTTG
1 TTTTTTTTTCTTTG
36260969 TTTTTTTTTCTTT
1 TTTTTTTTTCTTT
36260982 CTAGTTTCGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.00, C:0.07, G:0.04, T:0.89
Consensus pattern (14 bp):
TTTTTTTTTCTTTG
Found at i:36269216 original size:14 final size:14
Alignment explanation
Indices: 36269197--36269224 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
36269187 TATATTAGTA
36269197 TTTTCTATTCTATT
1 TTTTCTATTCTATT
36269211 TTTTCTATTCTATT
1 TTTTCTATTCTATT
36269225 AGTATTAGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.71
Consensus pattern (14 bp):
TTTTCTATTCTATT
Found at i:36269236 original size:5 final size:6
Alignment explanation
Indices: 36269221--36269291 Score: 59
Period size: 5 Copynumber: 13.2 Consensus size: 6
36269211 TTTTCTATTC
* *
36269221 TATTAG TATTAG -ATTAG TATT-C TATT-C TATTAG TATTAG -ATTAG
1 TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG
*
36269265 TATTAG --TTAG -ATTAG -GTTAG TATTAG T
1 TATTAG TATTAG TATTAG TATTAG TATTAG T
36269292 TAGTGATCCC
Statistics
Matches: 56, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
4 4 0.07
5 27 0.48
6 25 0.45
ACGTcount: A:0.31, C:0.03, G:0.17, T:0.49
Consensus pattern (6 bp):
TATTAG
Found at i:36269243 original size:27 final size:27
Alignment explanation
Indices: 36269213--36269268 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
36269203 ATTCTATTTT
36269213 TTCTATTCTATTAGTATTAGATTAGTA
1 TTCTATTCTATTAGTATTAGATTAGTA
36269240 TTCTATTCTATTAGTATTAGATTAGTA
1 TTCTATTCTATTAGTATTAGATTAGTA
36269267 TT
1 TT
36269269 AGTTAGATTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.29, C:0.07, G:0.11, T:0.54
Consensus pattern (27 bp):
TTCTATTCTATTAGTATTAGATTAGTA
Found at i:36269284 original size:20 final size:21
Alignment explanation
Indices: 36269250--36269295 Score: 76
Period size: 20 Copynumber: 2.2 Consensus size: 21
36269240 TTCTATTCTA
36269250 TTAGTATTAGATTAGTATTAG
1 TTAGTATTAGATTAGTATTAG
*
36269271 TTAG-ATTAGGTTAGTATTAG
1 TTAGTATTAGATTAGTATTAG
36269291 TTAGT
1 TTAGT
36269296 GATCCCGGCT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 19 0.83
21 4 0.17
ACGTcount: A:0.30, C:0.00, G:0.22, T:0.48
Consensus pattern (21 bp):
TTAGTATTAGATTAGTATTAG
Found at i:36269295 original size:10 final size:10
Alignment explanation
Indices: 36269250--36269295 Score: 67
Period size: 10 Copynumber: 4.5 Consensus size: 10
36269240 TTCTATTCTA
36269250 TTAGTATTAG
1 TTAGTATTAG
36269260 ATTAGTATTAG
1 -TTAGTATTAG
36269271 TTAG-ATTAGG
1 TTAGTATTA-G
36269281 TTAGTATTAG
1 TTAGTATTAG
36269291 TTAGT
1 TTAGT
36269296 GATCCCGGCT
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
9 4 0.12
10 15 0.45
11 14 0.42
ACGTcount: A:0.30, C:0.00, G:0.22, T:0.48
Consensus pattern (10 bp):
TTAGTATTAG
Found at i:36273150 original size:21 final size:21
Alignment explanation
Indices: 36273103--36273150 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
36273093 GATTTTTGAA
*
36273103 GTTTGATGTTAGAAAATCAAT
1 GTTTGTTGTTAGAAAATCAAT
*
36273124 GGTTGTTGTTAGATAAA-CAAT
1 GTTTGTTGTTAGA-AAATCAAT
*
36273145 TTTTGT
1 GTTTGT
36273151 AAAGGAATTT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 19 0.86
22 3 0.14
ACGTcount: A:0.31, C:0.04, G:0.21, T:0.44
Consensus pattern (21 bp):
GTTTGTTGTTAGAAAATCAAT
Found at i:36273848 original size:50 final size:49
Alignment explanation
Indices: 36273738--36273850 Score: 120
Period size: 50 Copynumber: 2.3 Consensus size: 49
36273728 GGACACACCA
* * * * *
36273738 CAACTCGTATGAGCTTACTAATTTTAGCTCGTAAGAGCTTATCGATTCT
1 CAACTCGTATGAGCTTACCAATTTCAGCTCGTAAGAGCATACCAATTCT
* * *
36273787 CAACTCATATGAGCTTACCGATTTACAGCTCGTGAGAGCATACCAATTCAT
1 CAACTCGTATGAGCTTACCAATTT-CAGCTCGTAAGAGCATACCAATTC-T
*
36273838 -AGCTCGTATGAGC
1 CAACTCGTATGAGC
36273851 ATAAATGTAC
Statistics
Matches: 52, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
49 21 0.40
50 30 0.58
51 1 0.02
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (49 bp):
CAACTCGTATGAGCTTACCAATTTCAGCTCGTAAGAGCATACCAATTCT
Found at i:36273853 original size:25 final size:25
Alignment explanation
Indices: 36273741--36273850 Score: 82
Period size: 25 Copynumber: 4.4 Consensus size: 25
36273731 CACACCACAA
* *
36273741 CTCGTATGAGCTTACTAATT-TTAG
1 CTCGTATGAGCTTACCAATTCATAG
* * * *
36273765 CTCGTAAGAGCTTATCGATTC-TCAA
1 CTCGTATGAGCTTACCAATTCAT-AG
* * * *
36273790 CTCATATGAGCTTACCGATTTACAG
1 CTCGTATGAGCTTACCAATTCATAG
*
36273815 CTCGTGA-GAGCATACCAATTCATAG
1 CTCGT-ATGAGCTTACCAATTCATAG
36273840 CTCGTATGAGC
1 CTCGTATGAGC
36273851 ATAAATGTAC
Statistics
Matches: 65, Mismatches: 16, Indels: 9
0.72 0.18 0.10
Matches are distributed among these distances:
24 18 0.28
25 46 0.71
26 1 0.02
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (25 bp):
CTCGTATGAGCTTACCAATTCATAG
Found at i:36278121 original size:26 final size:26
Alignment explanation
Indices: 36278085--36278138 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
36278075 GTTTAAAAGT
36278085 TCAATTCTTGCTCAAATCACTTACCA
1 TCAATTCTTGCTCAAATCACTTACCA
36278111 TCAATTCTTGCTCAAATCACTTACCA
1 TCAATTCTTGCTCAAATCACTTACCA
36278137 TC
1 TC
36278139 TTTAAAGCTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.31, G:0.04, T:0.35
Consensus pattern (26 bp):
TCAATTCTTGCTCAAATCACTTACCA
Found at i:36285899 original size:15 final size:15
Alignment explanation
Indices: 36285879--36285914 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
36285869 CCACATATCC
**
36285879 CAAAATAAATTTTTT
1 CAAAATAAAAATTTT
36285894 CAAAATAAAAATTTT
1 CAAAATAAAAATTTT
36285909 CAAAAT
1 CAAAAT
36285915 GTATCGAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (15 bp):
CAAAATAAAAATTTT
Done.