Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67659327
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 461372 characters in sequence are not A, C, G, or T
File 114 of 216
Found at i:36295453 original size:18 final size:18
Alignment explanation
Indices: 36295426--36295468 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
36295416 TATGACAAGC
* *
36295426 TTATGGTTATGGTTGATT
1 TTATGCTTATGGTTGATA
* *
36295444 TTATGCTTATGTTTTATA
1 TTATGCTTATGGTTGATA
36295462 TTATGCT
1 TTATGCT
36295469 AATGATATGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.19, C:0.05, G:0.19, T:0.58
Consensus pattern (18 bp):
TTATGCTTATGGTTGATA
Found at i:36298696 original size:23 final size:24
Alignment explanation
Indices: 36298666--36298715 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 24
36298656 GAACTCACTT
36298666 GAAA-GAGGAAAAAG-AAGAAAAA
1 GAAATGAGGAAAAAGAAAGAAAAA
* *
36298688 GAAATGAGGGAAACGAAAGAAAAA
1 GAAATGAGGAAAAAGAAAGAAAAA
36298712 -AAAT
1 GAAAT
36298716 AACAAAAGAG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 4 0.17
23 12 0.50
24 8 0.33
ACGTcount: A:0.68, C:0.02, G:0.26, T:0.04
Consensus pattern (24 bp):
GAAATGAGGAAAAAGAAAGAAAAA
Found at i:36314639 original size:15 final size:15
Alignment explanation
Indices: 36314610--36314643 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
36314600 AAAGAGGAAA
36314610 TTTTTTTACCACTAT
1 TTTTTTTACCACTAT
36314625 TTTTTCTTACC-CTAT
1 TTTTT-TTACCACTAT
36314640 TTTT
1 TTTT
36314644 GAAGCTTGCG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 13 0.72
16 5 0.28
ACGTcount: A:0.15, C:0.21, G:0.00, T:0.65
Consensus pattern (15 bp):
TTTTTTTACCACTAT
Found at i:36324965 original size:13 final size:13
Alignment explanation
Indices: 36324947--36324973 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
36324937 TTTCCAGAAA
36324947 TTATGAATTTATT
1 TTATGAATTTATT
36324960 TTATGAATTTATT
1 TTATGAATTTATT
36324973 T
1 T
36324974 AATGTTGACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:36325158 original size:50 final size:50
Alignment explanation
Indices: 36325073--36325365 Score: 406
Period size: 50 Copynumber: 5.8 Consensus size: 50
36325063 ATTTGGGTAA
*
36325073 AGAGGTCCCGTGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
* * **
36325123 AGAGTTCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCAATGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
** *
36325173 AGAGGTTTCATGTAAGACCATGTCTAGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
36325223 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
** * * * *
36325273 AGAGGTCCCCCGTAAGACCATGTCTAGGACATGGCATGGGCACCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
* ** * *
36325323 AAAAAATCCCATGGAAGACCATGTCTGGGACATGGCTTTGGCA
1 -AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA
36325366 TGTTATTATA
Statistics
Matches: 212, Mismatches: 30, Indels: 1
0.87 0.12 0.00
Matches are distributed among these distances:
50 179 0.84
51 33 0.16
ACGTcount: A:0.26, C:0.21, G:0.32, T:0.22
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
Found at i:36344071 original size:19 final size:20
Alignment explanation
Indices: 36344030--36344083 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
36344020 TACGAGTTTG
* *
36344030 CACTTTTGTGCTTCTATTCA
1 CACTTTGGTGCCTCTATTCA
36344050 CACTTTGGTGCCTCTATT-A
1 CACTTTGGTGCCTCTATTCA
* *
36344069 CACTTCGATGCCTCT
1 CACTTTGGTGCCTCT
36344084 GATTGCACAA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 14 0.47
20 16 0.53
ACGTcount: A:0.15, C:0.30, G:0.13, T:0.43
Consensus pattern (20 bp):
CACTTTGGTGCCTCTATTCA
Found at i:36345704 original size:38 final size:39
Alignment explanation
Indices: 36345610--36345849 Score: 254
Period size: 39 Copynumber: 6.3 Consensus size: 39
36345600 TATATAATTA
* * * *
36345610 TACCCCTGATTGCAGTTATGTGCCCTTGTTGTACTTTGG
1 TACCCCTGATCGCACTTACGTGCCCCTGTTGTACTTTGG
* * * *
36345649 TACCCCTGATCGTACTTACATTCCCCTGTTGTACTTTTG
1 TACCCCTGATCGCACTTACGTGCCCCTGTTGTACTTTGG
* * ** *
36345688 TA-CTCTGATCGCACTTATGTGCCGTTGTTGTACTTTGA
1 TACCCCTGATCGCACTTACGTGCCCCTGTTGTACTTTGG
36345726 TACCCCTGATCGCACTTACGTGCCCCTGTTGTACTTTGG
1 TACCCCTGATCGCACTTACGTGCCCCTGTTGTACTTTGG
* * * *
36345765 TA-CCCTGATCGCACTAATGTGCCCCTATTGTACTTCGG
1 TACCCCTGATCGCACTTACGTGCCCCTGTTGTACTTTGG
* * **
36345803 TACCCCTGATTGCACTTA--TGCCCCTATTGTACTCCGG
1 TACCCCTGATCGCACTTACGTGCCCCTGTTGTACTTTGG
*
36345840 TACTCCTGAT
1 TACCCCTGAT
36345850 AGCATTTTTT
Statistics
Matches: 169, Mismatches: 30, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
37 27 0.16
38 63 0.37
39 79 0.47
ACGTcount: A:0.15, C:0.29, G:0.18, T:0.37
Consensus pattern (39 bp):
TACCCCTGATCGCACTTACGTGCCCCTGTTGTACTTTGG
Found at i:36345743 original size:77 final size:77
Alignment explanation
Indices: 36345613--36345849 Score: 298
Period size: 77 Copynumber: 3.1 Consensus size: 77
36345603 ATAATTATAC
* * * *
36345613 CCCTGATTGCAGTTATGTGCCCTTGTTGTACTTTGGTACCCCTGATCGTACTTACATTCCCCTGT
1 CCCTGATCGCACTTATGTGCCCTTGTTGTACTTTGGTACCCCTGATCGCACTTACATGCCCCTGT
*
36345678 TGTACTTTTGTA
66 TGTACTTTGGTA
* * * *
36345690 CTCTGATCGCACTTATGTGCCGTTGTTGTACTTTGATACCCCTGATCGCACTTACGTGCCCCTGT
1 CCCTGATCGCACTTATGTGCCCTTGTTGTACTTTGGTACCCCTGATCGCACTTACATGCCCCTGT
36345755 TGTACTTTGGTA
66 TGTACTTTGGTA
* * * * * *
36345767 CCCTGATCGCACTAATGTGCCCCTATTGTACTTCGGTACCCCTGATTGCACTT--ATGCCCCTAT
1 CCCTGATCGCACTTATGTGCCCTTGTTGTACTTTGGTACCCCTGATCGCACTTACATGCCCCTGT
**
36345830 TGTACTCCGGTA
66 TGTACTTTGGTA
36345842 CTCCTGAT
1 C-CCTGAT
36345850 AGCATTTTTT
Statistics
Matches: 138, Mismatches: 21, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
75 19 0.14
76 6 0.04
77 113 0.82
ACGTcount: A:0.15, C:0.29, G:0.19, T:0.37
Consensus pattern (77 bp):
CCCTGATCGCACTTATGTGCCCTTGTTGTACTTTGGTACCCCTGATCGCACTTACATGCCCCTGT
TGTACTTTGGTA
Found at i:36345819 original size:20 final size:20
Alignment explanation
Indices: 36345726--36345819 Score: 61
Period size: 19 Copynumber: 4.8 Consensus size: 20
36345716 TGTACTTTGA
*
36345726 TACCCCTGATCGCACTTAC-G
1 TACCCCTGATTGCACTT-CGG
* * *
36345746 TGCCCCTG-TTGTACTTTGG
1 TACCCCTGATTGCACTTCGG
* ***
36345765 TA-CCCTGATCGCACTAATG
1 TACCCCTGATTGCACTTCGG
* *
36345784 TGCCCCT-ATTGTACTTCGG
1 TACCCCTGATTGCACTTCGG
36345803 TACCCCTGATTGCACTT
1 TACCCCTGATTGCACTT
36345820 ATGCCCCTAT
Statistics
Matches: 52, Mismatches: 18, Indels: 8
0.67 0.23 0.10
Matches are distributed among these distances:
18 5 0.10
19 28 0.54
20 19 0.37
ACGTcount: A:0.16, C:0.33, G:0.18, T:0.33
Consensus pattern (20 bp):
TACCCCTGATTGCACTTCGG
Found at i:36351779 original size:19 final size:20
Alignment explanation
Indices: 36351736--36351782 Score: 76
Period size: 20 Copynumber: 2.3 Consensus size: 20
36351726 TAAAGGTATT
36351736 AAATAGCTATGGAAACATAA
1 AAATAGCTATGGAAACATAA
*
36351756 AAATAGCTATGGAACCATAA
1 AAATAGCTATGGAAACATAA
36351776 AATATAG
1 AA-ATAG
36351783 GCCCTTATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 21 0.84
21 4 0.16
ACGTcount: A:0.53, C:0.11, G:0.15, T:0.21
Consensus pattern (20 bp):
AAATAGCTATGGAAACATAA
Found at i:36352716 original size:39 final size:39
Alignment explanation
Indices: 36352653--36352861 Score: 226
Period size: 39 Copynumber: 5.4 Consensus size: 39
36352643 TATATAACTA
* *
36352653 TACCCCTGATCGCACTTATGTGCCCTTGTTGTACTTCGG
1 TACCCCTGATCGCACTTACGTGCCCCTGTTGTACTTCGG
* * *
36352692 TACCCCTGATCGCTCTTACATGCCCCTGTTGTACTTCAG
1 TACCCCTGATCGCACTTACGTGCCCCTGTTGTACTTCGG
* **
36352731 TA-CCCTGATCGCACTTACGTGTCCCTGTTGTACTTTAG
1 TACCCCTGATCGCACTTACGTGCCCCTGTTGTACTTCGG
* * * *
36352769 TAACCCTGATCGCACTTACGTGCCCTTGTTGTACTTTGA
1 TACCCCTGATCGCACTTACGTGCCCCTGTTGTACTTCGG
* ** *
36352808 TACCCTTGATCGTTCTTAC-T-CCCCTATTGTACTTCGG
1 TACCCCTGATCGCACTTACGTGCCCCTGTTGTACTTCGG
* * *
36352845 TACTCCTAATAGCACTT
1 TACCCCTGATCGCACTT
36352862 TTTTGTCGTG
Statistics
Matches: 142, Mismatches: 27, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
37 24 0.17
38 35 0.25
39 83 0.58
ACGTcount: A:0.16, C:0.31, G:0.16, T:0.36
Consensus pattern (39 bp):
TACCCCTGATCGCACTTACGTGCCCCTGTTGTACTTCGG
Found at i:36352813 original size:77 final size:77
Alignment explanation
Indices: 36352656--36352804 Score: 219
Period size: 77 Copynumber: 1.9 Consensus size: 77
36352646 ATAACTATAC
* * * *
36352656 CCCTGATCGCACTTATGTGCCCTTGTTGTACTTCGGTACCCCTGATCGCTCTTACATGCCCCTGT
1 CCCTGATCGCACTTACGTGCCCTTGTTGTACTTCAGTAACCCTGATCGCACTTACATGCCCCTGT
36352721 TGTACTTCAGTA
66 TGTACTTCAGTA
* * *
36352733 CCCTGATCGCACTTACGTGTCCC-TGTTGTACTTTAGTAACCCTGATCGCACTTACGTGCCCTTG
1 CCCTGATCGCACTTACGTG-CCCTTGTTGTACTTCAGTAACCCTGATCGCACTTACATGCCCCTG
36352797 TTGTACTT
65 TTGTACTT
36352805 TGATACCCTT
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
77 61 0.95
78 3 0.05
ACGTcount: A:0.15, C:0.32, G:0.18, T:0.36
Consensus pattern (77 bp):
CCCTGATCGCACTTACGTGCCCTTGTTGTACTTCAGTAACCCTGATCGCACTTACATGCCCCTGT
TGTACTTCAGTA
Found at i:36368560 original size:50 final size:50
Alignment explanation
Indices: 36368435--36368674 Score: 180
Period size: 50 Copynumber: 4.7 Consensus size: 50
36368425 TAATAACATA
* * ** * *
36368435 CCAAAGCCATGTCCTAGACATGGTCTTACATGGGATGTTTCCTGTAC--TG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTTTCATAT-CGGTG
* * * * *
36368484 CCAATGCCATATCTCAGATATGGTCTTATATGGGA-GTTCTCATATCGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTT-TCATATCGGTG
* ** *
36368534 CCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTTTCATCTCGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTTTCATATCGGTG
* * * * **
36368584 CCAACGCCATGTCCCAGACATGGTCTTATACGGGACCTCTCATAACCTCAATAATG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTTTCAT-A--TC---GGTG
* *
36368640 CCAATGTCATGTCCCAGATATGGTCTTACATGGGA
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGA
36368675 TCTCATTCCC
Statistics
Matches: 150, Mismatches: 31, Indels: 13
0.77 0.16 0.07
Matches are distributed among these distances:
48 4 0.03
49 33 0.22
50 77 0.51
51 2 0.01
53 2 0.01
56 32 0.21
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.28
Consensus pattern (50 bp):
CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTTTCATATCGGTG
Found at i:36370954 original size:42 final size:42
Alignment explanation
Indices: 36370893--36370981 Score: 169
Period size: 42 Copynumber: 2.1 Consensus size: 42
36370883 AGGGACGATA
*
36370893 TGTATGAATTGGATTGGTTTTAAGATGAGTATTGATATGATT
1 TGTATGAATTGGATCGGTTTTAAGATGAGTATTGATATGATT
36370935 TGTATGAATTGGATCGGTTTTAAGATGAGTATTGATATGATT
1 TGTATGAATTGGATCGGTTTTAAGATGAGTATTGATATGATT
36370977 TGTAT
1 TGTAT
36370982 TCGTTTCAAA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.28, C:0.01, G:0.26, T:0.45
Consensus pattern (42 bp):
TGTATGAATTGGATCGGTTTTAAGATGAGTATTGATATGATT
Found at i:36374667 original size:16 final size:18
Alignment explanation
Indices: 36374646--36374683 Score: 53
Period size: 16 Copynumber: 2.2 Consensus size: 18
36374636 AAACCACAAT
36374646 TAATATTA-CAAATTA-A
1 TAATATTATCAAATTACA
*
36374662 TAATATTATCCAATTACA
1 TAATATTATCAAATTACA
36374680 TAAT
1 TAAT
36374684 CAGTAGTACA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 8 0.42
17 6 0.32
18 5 0.26
ACGTcount: A:0.50, C:0.11, G:0.00, T:0.39
Consensus pattern (18 bp):
TAATATTATCAAATTACA
Found at i:36378942 original size:17 final size:17
Alignment explanation
Indices: 36378920--36378952 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
36378910 ATATTTTTTA
36378920 TTTTTAATCAAATATAC
1 TTTTTAATCAAATATAC
36378937 TTTTTAATCAAATATA
1 TTTTTAATCAAATATA
36378953 TATACTAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.48
Consensus pattern (17 bp):
TTTTTAATCAAATATAC
Found at i:36383502 original size:31 final size:31
Alignment explanation
Indices: 36383466--36383527 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
36383456 AGATAATTTT
36383466 AAAGAGTTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
36383497 AAAGAGTTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
36383528 TAATTTGCCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.32, C:0.10, G:0.16, T:0.42
Consensus pattern (31 bp):
AAAGAGTTTTATTAGGATTCAATTACTCTTG
Found at i:36389669 original size:31 final size:31
Alignment explanation
Indices: 36389633--36389694 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
36389623 AGATAATTTT
36389633 AAAGAGTTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
36389664 AAAGAGTTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
36389695 TAATTTGCCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.32, C:0.10, G:0.16, T:0.42
Consensus pattern (31 bp):
AAAGAGTTTTATTAGGATTCAATTACTCTTG
Found at i:36391548 original size:28 final size:28
Alignment explanation
Indices: 36391477--36391549 Score: 71
Period size: 28 Copynumber: 2.6 Consensus size: 28
36391467 TATTAAAAAA
*
36391477 TAATTTTTTATAATTT-AAATTTAGTATT
1 TAATTTTTCA-AATTTAAAATTTAGTATT
*
36391505 TACTTTTTCAATATTTAAAATTTCAG-ATAT
1 TAATTTTTCAA-ATTTAAAATTT-AGTAT-T
36391535 TAATTTTTC-AATTTA
1 TAATTTTTCAAATTTA
36391550 CCTAACACTT
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
27 1 0.03
28 17 0.45
29 9 0.24
30 11 0.29
ACGTcount: A:0.36, C:0.05, G:0.03, T:0.56
Consensus pattern (28 bp):
TAATTTTTCAAATTTAAAATTTAGTATT
Found at i:36393223 original size:19 final size:17
Alignment explanation
Indices: 36393199--36393237 Score: 51
Period size: 19 Copynumber: 2.2 Consensus size: 17
36393189 CTGTTTTACA
36393199 ATTATTTCGTTATTATATT
1 ATTATTTCGTTA--ATATT
*
36393218 ATTATTTTGTTAATATT
1 ATTATTTCGTTAATATT
36393235 ATT
1 ATT
36393238 TGGATGTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 8 0.42
19 11 0.58
ACGTcount: A:0.28, C:0.03, G:0.05, T:0.64
Consensus pattern (17 bp):
ATTATTTCGTTAATATT
Found at i:36395994 original size:23 final size:25
Alignment explanation
Indices: 36395941--36395995 Score: 60
Period size: 25 Copynumber: 2.3 Consensus size: 25
36395931 TTTTCCCTTC
*
36395941 AATTTTATATAAAAAATTATTTTAA
1 AATTTTATATAAAAAATTATTTGAA
** *
36395966 TCTTTTATTTAAAAAA-T-TTTGAA
1 AATTTTATATAAAAAATTATTTGAA
36395989 AATTTTA
1 AATTTTA
36395996 AACTTGCAAT
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
23 10 0.42
24 1 0.04
25 13 0.54
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (25 bp):
AATTTTATATAAAAAATTATTTGAA
Found at i:36396149 original size:18 final size:17
Alignment explanation
Indices: 36396115--36396162 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 17
36396105 ATATTTAATT
36396115 AATATTTTA-AAATTTAA
1 AATATTTTATAAA-TTAA
36396132 AATACTTTTATAAATTAA
1 AATA-TTTTATAAATTAA
36396150 AATATTTT-TAAAT
1 AATATTTTATAAAT
36396163 AATTTTTATT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
16 5 0.17
17 8 0.28
18 13 0.45
19 3 0.10
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (17 bp):
AATATTTTATAAATTAA
Found at i:36396189 original size:21 final size:22
Alignment explanation
Indices: 36396159--36396201 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
36396149 AAATATTTTT
36396159 AAATAA-TTTTT-ATTTTTTAA
1 AAATAATTTTTTAATTTTTTAA
36396179 AAATAAATTTTTTAATTTTTTAA
1 AAAT-AATTTTTTAATTTTTTAA
36396202 TTTTAAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 4 0.20
21 2 0.10
22 5 0.25
23 9 0.45
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (22 bp):
AAATAATTTTTTAATTTTTTAA
Found at i:36396208 original size:23 final size:23
Alignment explanation
Indices: 36396155--36396208 Score: 56
Period size: 23 Copynumber: 2.3 Consensus size: 23
36396145 ATTAAAATAT
36396155 TTTTAAATAATTTTTATTTTTTAA
1 TTTTAAAT-ATTTTTATTTTTTAA
***
36396179 AAATAAAT-TTTTTAATTTTTTAA
1 TTTTAAATATTTTT-ATTTTTTAA
36396202 TTTTAAA
1 TTTTAAA
36396209 AAATTAATTA
Statistics
Matches: 23, Mismatches: 6, Indels: 3
0.72 0.19 0.09
Matches are distributed among these distances:
22 5 0.22
23 13 0.57
24 5 0.22
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (23 bp):
TTTTAAATATTTTTATTTTTTAA
Found at i:36396355 original size:23 final size:23
Alignment explanation
Indices: 36396313--36396356 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
36396303 TTAAGATGTT
* *
36396313 TTAAAAAAATGTATATTTAAAAG
1 TTAAAAAAATGTAAAATTAAAAG
*
36396336 TTAAAAAAATTTAAAATTAAA
1 TTAAAAAAATGTAAAATTAAA
36396357 TTAAAGATTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (23 bp):
TTAAAAAAATGTAAAATTAAAAG
Found at i:36398121 original size:6 final size:6
Alignment explanation
Indices: 36398073--36398130 Score: 55
Period size: 6 Copynumber: 9.8 Consensus size: 6
36398063 TATTTAGATT
* * * * * *
36398073 TTTTTC TTTTTA TTTATA TTTCTA TTTCTA TTTTTC TTGTTA TTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
36398121 -TTTTA TTTTT
1 TTTTTA TTTTT
36398131 TAGACTTATA
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
5 5 0.12
6 38 0.88
ACGTcount: A:0.14, C:0.07, G:0.02, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:36398124 original size:50 final size:50
Alignment explanation
Indices: 36398086--36398184 Score: 130
Period size: 50 Copynumber: 1.9 Consensus size: 50
36398076 TTCTTTTTAT
36398086 TTATAT-TTCTATTTCTATTTTT-CTTGTTATTTTTATTTTATTTTTTAGAC
1 TTATATGTTCTATTT-TATTTTTAC-TGTTATTTTTATTTTATTTTTTAGAC
36398136 TTATATGTTCTATTTTATTTTTACTGTTATTGTTTTATTAATTATTTTT
1 TTATATGTTCTATTTTATTTTTACTGTTA-T-TTTTATT--TTATTTTT
36398185 CTATTTTGTT
Statistics
Matches: 43, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
50 18 0.42
51 10 0.23
52 7 0.16
54 8 0.19
ACGTcount: A:0.19, C:0.06, G:0.05, T:0.70
Consensus pattern (50 bp):
TTATATGTTCTATTTTATTTTTACTGTTATTTTTATTTTATTTTTTAGAC
Found at i:36398379 original size:14 final size:16
Alignment explanation
Indices: 36398337--36398404 Score: 70
Period size: 16 Copynumber: 4.4 Consensus size: 16
36398327 CTCTCTCTCT
* *
36398337 CTCTCCCTCCTTACCC
1 CTCTCTCTCCTTCCCC
*
36398353 CTC-C-CTCTTTCCCC
1 CTCTCTCTCCTTCCCC
*
36398367 CTCTCTC-CCTCCCCC
1 CTCTCTCTCCTTCCCC
*
36398382 CTCTCTCTCCTTCCCT
1 CTCTCTCTCCTTCCCC
36398398 CTCTCTC
1 CTCTCTC
36398405 ACTCACTCAC
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
14 11 0.26
15 15 0.35
16 17 0.40
ACGTcount: A:0.01, C:0.63, G:0.00, T:0.35
Consensus pattern (16 bp):
CTCTCTCTCCTTCCCC
Found at i:36398428 original size:38 final size:38
Alignment explanation
Indices: 36398382--36398481 Score: 164
Period size: 38 Copynumber: 2.6 Consensus size: 38
36398372 TCCCTCCCCC
*
36398382 CTCTCTCTCCTTCCCTCTCTCTCACTCACTCACTCTCT
1 CTCTCTCTCCTTCCCTCTCTCTCACTCACTCACTCACT
*
36398420 CTCTCTCTCCTTCCCTCCCTCTCACTCACTCACTCACT
1 CTCTCTCTCCTTCCCTCTCTCTCACTCACTCACTCACT
*
36398458 CTCTCTCTCCTCTCTCTCTCTCTC
1 CTCTCTCTCCT-TCCCTCTCTCTC
36398482 TGTCTTAATC
Statistics
Matches: 57, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
38 47 0.82
39 10 0.18
ACGTcount: A:0.07, C:0.54, G:0.00, T:0.39
Consensus pattern (38 bp):
CTCTCTCTCCTTCCCTCTCTCTCACTCACTCACTCACT
Found at i:36398463 original size:4 final size:4
Alignment explanation
Indices: 36398382--36398482 Score: 77
Period size: 4 Copynumber: 26.5 Consensus size: 4
36398372 TCCCTCCCCC
* * * *
36398382 CTCT CTCT C-CT -TCC CTCT CTCT CACT CACT CACT CTCT CTCT CTCT
1 CTCT CTCT CTCT CTCT CTCT CTCT CTCT CTCT CTCT CTCT CTCT CTCT
* * * * * *
36398428 C-CT -TCC CTCC CTCT CACT CACT CACT CACT CTCT CTCT C-CT CTCT
1 CTCT CTCT CTCT CTCT CTCT CTCT CTCT CTCT CTCT CTCT CTCT CTCT
36398473 CTCT CTCT CT
1 CTCT CTCT CT
36398483 GTCTTAATCT
Statistics
Matches: 84, Mismatches: 8, Indels: 10
0.82 0.08 0.10
Matches are distributed among these distances:
3 9 0.11
4 75 0.89
ACGTcount: A:0.07, C:0.53, G:0.00, T:0.40
Consensus pattern (4 bp):
CTCT
Found at i:36403266 original size:21 final size:21
Alignment explanation
Indices: 36403240--36403314 Score: 62
Period size: 21 Copynumber: 3.4 Consensus size: 21
36403230 ATAAATTTTG
36403240 TATTAAATTGAATAGTATAAA
1 TATTAAATTGAATAGTATAAA
* ** *
36403261 TATTAAA-TGGATTTTATGAATTTTG
1 TATTAAATTGAATAGTAT-AA----A
36403286 TATTAAATTGAATAGTATAAA
1 TATTAAATTGAATAGTATAAA
36403307 TATTAAAT
1 TATTAAAT
36403315 GGATTGAATT
Statistics
Matches: 40, Mismatches: 8, Indels: 12
0.67 0.13 0.20
Matches are distributed among these distances:
20 7 0.17
21 17 0.43
25 9 0.22
26 7 0.17
ACGTcount: A:0.45, C:0.00, G:0.11, T:0.44
Consensus pattern (21 bp):
TATTAAATTGAATAGTATAAA
Found at i:36412325 original size:20 final size:20
Alignment explanation
Indices: 36412300--36412337 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
36412290 ACGGAATTTC
*
36412300 ATTTCTCTATTTATCCATCT
1 ATTTCTCCATTTATCCATCT
*
36412320 ATTTCTCCATTTTTCCAT
1 ATTTCTCCATTTATCCAT
36412338 TTCTAACATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.26, G:0.00, T:0.55
Consensus pattern (20 bp):
ATTTCTCCATTTATCCATCT
Found at i:36431467 original size:32 final size:32
Alignment explanation
Indices: 36431426--36431525 Score: 128
Period size: 33 Copynumber: 3.1 Consensus size: 32
36431416 GGGATTTTAA
36431426 AAAATAAATTAGGTTTTAGGGTTTTTTAAAAT
1 AAAATAAATTAGGTTTTAGGGTTTTTTAAAAT
* **
36431458 AAAATAAATTAAGGTTTAAGATTTTTTTAAAAAT
1 AAAATAAATT-AGGTTTTAGGGTTTTTT-AAAAT
* * *
36431492 AAATTAAATTAGGGTTTAGGGTTTTTAAAAAT
1 AAAATAAATTAGGTTTTAGGGTTTTTTAAAAT
36431524 AA
1 AA
36431526 TTTTGTATTT
Statistics
Matches: 57, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
32 17 0.30
33 26 0.46
34 14 0.25
ACGTcount: A:0.45, C:0.00, G:0.14, T:0.41
Consensus pattern (32 bp):
AAAATAAATTAGGTTTTAGGGTTTTTTAAAAT
Found at i:36431484 original size:33 final size:34
Alignment explanation
Indices: 36431426--36431525 Score: 118
Period size: 32 Copynumber: 3.1 Consensus size: 34
36431416 GGGATTTTAA
* *
36431426 AAAATAAATT-AGGTTTTAGGGTTTTTT-AAAAT
1 AAAATAAATTAAGGTTTAAGAGTTTTTTAAAAAT
*
36431458 AAAATAAATTAAGGTTTAAGATTTTTTTAAAAAT
1 AAAATAAATTAAGGTTTAAGAGTTTTTTAAAAAT
* * *
36431492 AAATTAAATTAGGGTTT-AG-GGTTTTTAAAAAT
1 AAAATAAATTAAGGTTTAAGAGTTTTTTAAAAAT
36431524 AA
1 AA
36431526 TTTTGTATTT
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
32 23 0.39
33 16 0.27
34 20 0.34
ACGTcount: A:0.45, C:0.00, G:0.14, T:0.41
Consensus pattern (34 bp):
AAAATAAATTAAGGTTTAAGAGTTTTTTAAAAAT
Found at i:36435352 original size:16 final size:16
Alignment explanation
Indices: 36435328--36435358 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
36435318 AATATTTGAT
36435328 AATGACTAGCTATTGG
1 AATGACTAGCTATTGG
*
36435344 AATGGCTAGCTATTG
1 AATGACTAGCTATTG
36435359 ACATGCTTGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.13, G:0.26, T:0.32
Consensus pattern (16 bp):
AATGACTAGCTATTGG
Found at i:36446941 original size:14 final size:14
Alignment explanation
Indices: 36446922--36446949 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
36446912 TAAAGTTATA
36446922 TTTAATAATTCATT
1 TTTAATAATTCATT
36446936 TTTAATAATTCATT
1 TTTAATAATTCATT
36446950 AATAAATTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.57
Consensus pattern (14 bp):
TTTAATAATTCATT
Found at i:36447420 original size:19 final size:19
Alignment explanation
Indices: 36447398--36447435 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
36447388 TCAATCATCC
36447398 CTCATCCTATCA-TCTCTCA
1 CTCATCC-ATCATTCTCTCA
*
36447417 CTCATTCATCATTCTCTCA
1 CTCATCCATCATTCTCTCA
36447436 ACTCTTTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.21, C:0.39, G:0.00, T:0.39
Consensus pattern (19 bp):
CTCATCCATCATTCTCTCA
Found at i:36457514 original size:13 final size:13
Alignment explanation
Indices: 36457498--36457527 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
36457488 AACCTAAATG
36457498 AAAAATGAAAAGA
1 AAAAATGAAAAGA
36457511 AAAAATGAAAAGA
1 AAAAATGAAAAGA
36457524 AAAA
1 AAAA
36457528 CCCTAACCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.80, C:0.00, G:0.13, T:0.07
Consensus pattern (13 bp):
AAAAATGAAAAGA
Found at i:36464370 original size:24 final size:25
Alignment explanation
Indices: 36464329--36464375 Score: 62
Period size: 24 Copynumber: 1.9 Consensus size: 25
36464319 TTCAGCTTTT
36464329 AACCCAATACTTTATATT-TATTCC
1 AACCCAATACTTTATATTCTATTCC
*
36464353 AACCCAATA-TTTGTTATTCTATT
1 AACCCAATACTTT-ATATTCTATT
36464376 TCCCAAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 3 0.15
24 13 0.65
25 4 0.20
ACGTcount: A:0.32, C:0.21, G:0.02, T:0.45
Consensus pattern (25 bp):
AACCCAATACTTTATATTCTATTCC
Found at i:36468434 original size:56 final size:56
Alignment explanation
Indices: 36468348--36468523 Score: 325
Period size: 56 Copynumber: 3.1 Consensus size: 56
36468338 ACAAGGGATG
* *
36468348 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAACAAAATAATAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
36468404 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
36468460 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
36468516 ATGGGCAA
1 ATGGGCAA
36468524 TAAACTAATA
Statistics
Matches: 117, Mismatches: 3, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
56 117 1.00
ACGTcount: A:0.45, C:0.10, G:0.22, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:36469788 original size:79 final size:81
Alignment explanation
Indices: 36469652--36469836 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
36469642 TCGAATGATG
*
36469652 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
36469716 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
36469731 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
36469793 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
36469811 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
36469837 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:36469850 original size:40 final size:40
Alignment explanation
Indices: 36469653--36469836 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
36469643 CGAATGATGT
* * * *
36469653 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
36469693 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
36469733 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
36469771 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
36469812 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
36469837 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:36469858 original size:79 final size:79
Alignment explanation
Indices: 36469705--36469869 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
36469695 GGACTAAGAT
* **
36469705 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
36469770 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
36469784 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
36469847 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
36469863 CCGAAGG
1 CCGAAGG
36469870 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:36475711 original size:56 final size:56
Alignment explanation
Indices: 36475625--36475744 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
36475615 ACAAGGGATG
36475625 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAACAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAACAAAATAAGAAGC
*
36475681 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAACAAAATAAGAAGC
36475737 ATGGGCAA
1 ATGGGCAA
36475745 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.46, C:0.10, G:0.23, T:0.22
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAACAAAATAAGAAGC
Found at i:36476956 original size:40 final size:39
Alignment explanation
Indices: 36476872--36477056 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 39
36476862 TCGAATGATG
* * *
36476872 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAT
* * *
36476911 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAT
*
36476952 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAT
*
36476991 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAT
* *
36477030 AACCGGGCTATGACCCGAAGGCATTTG
1 -TCCGGGCTAAG-CCCGAAGGCATTTG
36477057 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
39 36 0.29
40 79 0.64
41 9 0.07
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:36477008 original size:79 final size:81
Alignment explanation
Indices: 36476872--36477056 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
36476862 TCGAATGATG
* *
36476872 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
36476936 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
36476951 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
36477013 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
36477031 ACCGGGCTATGACCCGAAGGCATTTG
1 TCCGGGCTAAGACCCGAAGGCATTTG
36477057 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:36477078 original size:79 final size:79
Alignment explanation
Indices: 36476925--36477089 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
36476915 GGACTAAGAT
* **
36476925 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
36476990 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
36477004 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGACCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
36477067 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
36477083 CCGAAGG
1 CCGAAGG
36477090 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:36479058 original size:14 final size:15
Alignment explanation
Indices: 36479034--36479062 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
36479024 CTACATGATG
36479034 TTTCTTTCTCCTCAT
1 TTTCTTTCTCCTCAT
36479049 TTTC-TTCTCCTCAT
1 TTTCTTTCTCCTCAT
36479063 CTTTTTATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.07, C:0.34, G:0.00, T:0.59
Consensus pattern (15 bp):
TTTCTTTCTCCTCAT
Found at i:36479367 original size:21 final size:20
Alignment explanation
Indices: 36479343--36479402 Score: 52
Period size: 21 Copynumber: 3.0 Consensus size: 20
36479333 ATTCTTCTTT
36479343 TTCTATCTCTTTTTCAGCAAC
1 TTCT-TCTCTTTTTCAGCAAC
*
36479364 TTC-T-TCTTCTTCAGCAAC
1 TTCTTCTCTTTTTCAGCAAC
** *
36479382 AACTTTCTCTTTTGCAGCAAC
1 TTC-TTCTCTTTTTCAGCAAC
36479403 AACTTCCTTC
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
18 14 0.45
19 1 0.03
20 1 0.03
21 15 0.48
ACGTcount: A:0.20, C:0.30, G:0.07, T:0.43
Consensus pattern (20 bp):
TTCTTCTCTTTTTCAGCAAC
Found at i:36491123 original size:21 final size:21
Alignment explanation
Indices: 36491097--36491139 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
36491087 CTCAACGGGA
36491097 TAGCTGATATGGCCAGTTAAC
1 TAGCTGATATGGCCAGTTAAC
*
36491118 TAGCTGATGTGGCCAGTTAAC
1 TAGCTGATATGGCCAGTTAAC
36491139 T
1 T
36491140 TGCCATTTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.30
Consensus pattern (21 bp):
TAGCTGATATGGCCAGTTAAC
Found at i:36494691 original size:29 final size:28
Alignment explanation
Indices: 36494619--36494836 Score: 127
Period size: 29 Copynumber: 7.5 Consensus size: 28
36494609 ACGATCATCG
* * *
36494619 ATTATGTAAAGGGATAGCTTCGGCTATCA
1 ATTATGAAAAGGGAT-GGTTCGACTATCA
* * * *
36494648 AATATGAATATGGATAGATTCGACTATCA
1 ATTATGAAAAGGGAT-GGTTCGACTATCA
*
36494677 ATTATGAAAAGGGATGGTGAT-GACCATCA
1 ATTATGAAAAGGGATGGT--TCGACTATCA
** * *
36494706 ACCATGAAAAGGGATGGTGACGACCATCA
1 ATTATGAAAAGGGATGGT-TCGACTATCA
* * * * * * *
36494735 AATACGAAAAGAGATAGCTTTGGCTATCG
1 ATTATGAAAAGGGAT-GGTTCGACTATCA
*
36494764 ATTATGAAAAGGGATGGTGACGA-TCATCA
1 ATTATGAAAAGGGATGGT-TCGACT-ATCA
*
36494793 ATTAATGAAAAGGGATGGTTTCGACCATCGA
1 ATT-ATGAAAAGGGATGG-TTCGACTATC-A
36494824 A-TATGAAAAGGGA
1 ATTATGAAAAGGGA
36494837 CGATTACGAC
Statistics
Matches: 144, Mismatches: 35, Indels: 20
0.72 0.18 0.10
Matches are distributed among these distances:
28 5 0.03
29 112 0.78
30 24 0.17
31 3 0.02
ACGTcount: A:0.38, C:0.12, G:0.25, T:0.24
Consensus pattern (28 bp):
ATTATGAAAAGGGATGGTTCGACTATCA
Found at i:36494735 original size:58 final size:56
Alignment explanation
Indices: 36494668--36494836 Score: 176
Period size: 58 Copynumber: 2.9 Consensus size: 56
36494658 TGGATAGATT
* * *
36494668 CGACTATCAATTATGAAAAGGGATGGTGATGACCATCAACCATGAAAAGGGATGGTGA
1 CGACCATCAATTATGAAAAGGGATGGT-TTGACCATCAA-TATGAAAAGGGATGGTGA
* * * * * * *
36494726 CGACCATCAAATACGAAAAGAGATAGCTTTGGCTATCGATTATGAAAAGGGATGGTGA
1 CGACCATCAATTATGAAAAGGGAT-GGTTTGACCATC-AATATGAAAAGGGATGGTGA
*
36494784 CGATCATCAATTAATGAAAAGGGATGGTTTCGACCATCGAATATGAAAAGGGA
1 CGACCATCAATT-ATGAAAAGGGATGGTTT-GACCATC-AATATGAAAAGGGA
36494837 CGATTACGAC
Statistics
Matches: 89, Mismatches: 18, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
58 57 0.64
59 32 0.36
ACGTcount: A:0.38, C:0.14, G:0.26, T:0.22
Consensus pattern (56 bp):
CGACCATCAATTATGAAAAGGGATGGTTTGACCATCAATATGAAAAGGGATGGTGA
Found at i:36494772 original size:87 final size:88
Alignment explanation
Indices: 36494671--36494833 Score: 238
Period size: 87 Copynumber: 1.9 Consensus size: 88
36494661 ATAGATTCGA
* *
36494671 CTATCAATTATGAAAAGGGATGGTGATGACCATCAA-CCATGAAAAGGGATGGTGACGACCATCA
1 CTATCAATTATGAAAAGGGATGGTGACGACCATCAATCAATGAAAAGGGATGGTGACGACCATCA
36494735 AATACGAAAAGAGATAGCTTTGG
66 AATACGAAAAGAGATAGCTTTGG
* * * ** *
36494758 CTATCGATTATGAAAAGGGATGGTGACGATCATCAATTAATGAAAAGGGATGGTTTCGACCATCG
1 CTATCAATTATGAAAAGGGATGGTGACGACCATCAATCAATGAAAAGGGATGGTGACGACCATCA
*
36494823 AATATGAAAAG
66 AATACGAAAAG
36494834 GGACGATTAC
Statistics
Matches: 66, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
87 33 0.50
88 33 0.50
ACGTcount: A:0.39, C:0.13, G:0.25, T:0.23
Consensus pattern (88 bp):
CTATCAATTATGAAAAGGGATGGTGACGACCATCAATCAATGAAAAGGGATGGTGACGACCATCA
AATACGAAAAGAGATAGCTTTGG
Found at i:36494846 original size:29 final size:29
Alignment explanation
Indices: 36494679--36494849 Score: 132
Period size: 29 Copynumber: 5.9 Consensus size: 29
36494669 GACTATCAAT
* *
36494679 TATGAAAAGGGATGGTGATGACCATC-AA
1 TATGAAAAGGGATGGTTACGACCATCGAA
* * *
36494707 CCATGAAAAGGGATGGTGACGACCATCAAA
1 -TATGAAAAGGGATGGTTACGACCATCGAA
* * * * * * *
36494737 TACGAAAAGAGATAGCTT-TGGCTATCGAT
1 TATGAAAAGGGAT-GGTTACGACCATCGAA
* *
36494766 TATGAAAAGGGATGGTGACGATCATC-AA
1 TATGAAAAGGGATGGTTACGACCATCGAA
*
36494794 TTAATGAAAAGGGATGGTTTCGACCATCGAA
1 -T-ATGAAAAGGGATGGTTACGACCATCGAA
* *
36494825 TATGAAAAGGGACGATTACGACCAT
1 TATGAAAAGGGATGGTTACGACCAT
36494850 TGTTTAGCAC
Statistics
Matches: 109, Mismatches: 27, Indels: 12
0.74 0.18 0.08
Matches are distributed among these distances:
28 3 0.03
29 77 0.71
30 27 0.25
31 2 0.02
ACGTcount: A:0.38, C:0.14, G:0.26, T:0.22
Consensus pattern (29 bp):
TATGAAAAGGGATGGTTACGACCATCGAA
Found at i:36497239 original size:30 final size:30
Alignment explanation
Indices: 36497205--36497284 Score: 142
Period size: 30 Copynumber: 2.7 Consensus size: 30
36497195 GTGACAAATA
*
36497205 TAGGTTAAGTAATGTTTTTGGTTGGGTAAT
1 TAGGTTAAGTAATGTTTTTGGTTGGCTAAT
36497235 TAGGTTAAGTAATGTTTTTGGTTGGCTAAT
1 TAGGTTAAGTAATGTTTTTGGTTGGCTAAT
*
36497265 TACGTTAAGTAATGTTTTTG
1 TAGGTTAAGTAATGTTTTTG
36497285 ATGTGATTCA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 48 1.00
ACGTcount: A:0.24, C:0.03, G:0.26, T:0.47
Consensus pattern (30 bp):
TAGGTTAAGTAATGTTTTTGGTTGGCTAAT
Found at i:36503555 original size:42 final size:43
Alignment explanation
Indices: 36503477--36503611 Score: 130
Period size: 43 Copynumber: 3.1 Consensus size: 43
36503467 TCTGAGATAG
* * *
36503477 TGGCATCGATTTGA-GATTTACGTGTAAAACCATGTCTGGGACAT
1 TGGCATCGATAT-ATGATTT-CGTGTAAGACCTTGTCTGGGACAT
* * *
36503521 TGGCATCG-TATATGATTTCGTGTAAGACCTTGTCTGAGATAG
1 TGGCATCGATATATGATTTCGTGTAAGACCTTGTCTGGGACAT
* * * * * *
36503563 TGGCATTGATATTTGATTACATGTAAGACCTCGTCTGGGACGT
1 TGGCATCGATATATGATTTCGTGTAAGACCTTGTCTGGGACAT
36503606 TGGCAT
1 TGGCAT
36503612 TGTACGAGCT
Statistics
Matches: 74, Mismatches: 15, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
42 27 0.36
43 39 0.53
44 8 0.11
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.34
Consensus pattern (43 bp):
TGGCATCGATATATGATTTCGTGTAAGACCTTGTCTGGGACAT
Found at i:36503557 original size:86 final size:86
Alignment explanation
Indices: 36503441--36503611 Score: 213
Period size: 86 Copynumber: 2.0 Consensus size: 86
36503431 TGGGATTTCG
* *
36503441 GTATATGATTTTTGTGTAAGACCACATCTGAGATAGTGGCATCGAT-TTGAGATTTACGTGTAAA
1 GTATATGATTTTCGTGTAAGACCACATCTGAGATAGTGGCATCGATATT-AGA-TTACATGTAAA
36503505 ACCAT-GTCTGGGACATTGGCATC
64 ACC-TCGTCTGGGACATTGGCATC
*** * * *
36503528 GTATATGA-TTTCGTGTAAGACCTTGTCTGAGATAGTGGCATTGATATTTGATTACATGTAAGAC
1 GTATATGATTTTCGTGTAAGACCACATCTGAGATAGTGGCATCGATATTAGATTACATGTAAAAC
*
36503592 CTCGTCTGGGACGTTGGCAT
66 CTCGTCTGGGACATTGGCAT
36503612 TGTACGAGCT
Statistics
Matches: 73, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
84 1 0.01
85 28 0.38
86 34 0.47
87 10 0.14
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.35
Consensus pattern (86 bp):
GTATATGATTTTCGTGTAAGACCACATCTGAGATAGTGGCATCGATATTAGATTACATGTAAAAC
CTCGTCTGGGACATTGGCATC
Found at i:36503590 original size:43 final size:43
Alignment explanation
Indices: 36503467--36503599 Score: 135
Period size: 42 Copynumber: 3.1 Consensus size: 43
36503457 TAAGACCACA
* * *
36503467 TCTGAGATAGTGGCATCGAT-TTGAGATTTACGTGTAAAACCATG
1 TCTGAGATAGTGGCATCGATATT-TGA-TTACGTGTAAGACCTTG
* * * * *
36503511 TCTGGGACATTGGCATCG-TATATGATTTCGTGTAAGACCTTG
1 TCTGAGATAGTGGCATCGATATTTGATTACGTGTAAGACCTTG
* * *
36503553 TCTGAGATAGTGGCATTGATATTTGATTACATGTAAGACCTCG
1 TCTGAGATAGTGGCATCGATATTTGATTACGTGTAAGACCTTG
36503596 TCTG
1 TCTG
36503600 GGACGTTGGC
Statistics
Matches: 71, Mismatches: 16, Indels: 5
0.77 0.17 0.05
Matches are distributed among these distances:
42 28 0.39
43 27 0.38
44 16 0.23
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.35
Consensus pattern (43 bp):
TCTGAGATAGTGGCATCGATATTTGATTACGTGTAAGACCTTG
Found at i:36507872 original size:136 final size:136
Alignment explanation
Indices: 36507628--36507900 Score: 501
Period size: 136 Copynumber: 2.0 Consensus size: 136
36507618 ATATTATTGT
* *
36507628 TATTACTCGAGCAGGTAACAGACTAACAACGTTACAACAGAGCCTACAGTACATAAAGGAAAAGA
1 TATTACTCGAGCAGGTAACAAACTAACAACGTTACAAAAGAGCCTACAGTACATAAAGGAAAAGA
*
36507693 GTAAAATGATAATTTTAACATTATGAAGCAGTCCTAATTATTTAGGGTGTATATGTTTAATGAAA
66 ATAAAATGATAATTTTAACATTATGAAGCAGTCCTAATTATTTAGGGTGTATATGTTTAATGAAA
36507758 AATAGC
131 AATAGC
*
36507764 TATTACTCGAGCAGGTAACAAACTAACAATGTTACAAAAGAGCCTACAGTACATAAAGGAAAAGA
1 TATTACTCGAGCAGGTAACAAACTAACAACGTTACAAAAGAGCCTACAGTACATAAAGGAAAAGA
*
36507829 ATAAAATGATAATTTTAACATTATGAAGCGGTCCTAATTATTTAGGGTGTATATGTTTAATGAAA
66 ATAAAATGATAATTTTAACATTATGAAGCAGTCCTAATTATTTAGGGTGTATATGTTTAATGAAA
36507894 AATAGC
131 AATAGC
36507900 T
1 T
36507901 TACATGAAAT
Statistics
Matches: 132, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
136 132 1.00
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.28
Consensus pattern (136 bp):
TATTACTCGAGCAGGTAACAAACTAACAACGTTACAAAAGAGCCTACAGTACATAAAGGAAAAGA
ATAAAATGATAATTTTAACATTATGAAGCAGTCCTAATTATTTAGGGTGTATATGTTTAATGAAA
AATAGC
Found at i:36508236 original size:21 final size:21
Alignment explanation
Indices: 36508205--36508254 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 21
36508195 TATATTTAAA
36508205 AATATAAT-AAATTATTAATATT
1 AATA-AATAAAATTATT-ATATT
*
36508227 AATAAATAAAATTATTATTTT
1 AATAAATAAAATTATTATATT
36508248 AATAAAT
1 AATAAAT
36508255 TATTTAATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 14 0.54
22 12 0.46
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (21 bp):
AATAAATAAAATTATTATATT
Found at i:36517600 original size:52 final size:53
Alignment explanation
Indices: 36517488--36517635 Score: 192
Period size: 52 Copynumber: 2.8 Consensus size: 53
36517478 GGCATTGATG
* * * * *
36517488 GACCATATCGTGTAAGA-TCATAACTGGTGGGTTATGGCATCATATGGGAAGAA
1 GACCATATCGTGTAAGACT-GTAACTGGTAGGTTATGGTATCATATAGAAAGAA
* * *
36517541 GATCATATCGTGTAAAACTGTAACTGGT-GGTTATGGTATGATATAGAAAGAA
1 GACCATATCGTGTAAGACTGTAACTGGTAGGTTATGGTATCATATAGAAAGAA
*
36517593 GACCATATCGTGTAAGACTGTAACTTGTAGGTTATGGTATCAT
1 GACCATATCGTGTAAGACTGTAACTGGTAGGTTATGGTATCAT
36517636 GTGGAAATAT
Statistics
Matches: 82, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
52 45 0.55
53 36 0.44
54 1 0.01
ACGTcount: A:0.32, C:0.11, G:0.26, T:0.30
Consensus pattern (53 bp):
GACCATATCGTGTAAGACTGTAACTGGTAGGTTATGGTATCATATAGAAAGAA
Found at i:36517806 original size:28 final size:28
Alignment explanation
Indices: 36517760--36518019 Score: 261
Period size: 28 Copynumber: 9.3 Consensus size: 28
36517750 CAAGAGAAGA
*
36517760 GAAGCCTTTGTGGCGATCTCTGTTAAAC
1 GAAGCCTTTGTGGCGATCTCTGTTAAAG
* * *
36517788 GAATCATTTGTGGCGATCTCTGTTAATG
1 GAAGCCTTTGTGGCGATCTCTGTTAAAG
* * *
36517816 AAAGCCTTTGTGGTGATCTCTATTAAAG
1 GAAGCCTTTGTGGCGATCTCTGTTAAAG
* * *
36517844 AAAGCCTTTGTGGTGATCTCTGTTAAAA
1 GAAGCCTTTGTGGCGATCTCTGTTAAAG
* *
36517872 GAAGCCTTTGTGGCGAGCTTTGTTAAAG
1 GAAGCCTTTGTGGCGATCTCTGTTAAAG
* * *
36517900 GAATCCTTTGTGGCCATCTCCGTTAAAG
1 GAAGCCTTTGTGGCGATCTCTGTTAAAG
* *
36517928 GAAGCATTTGTGGCAATCTCTGTTAAAG
1 GAAGCCTTTGTGGCGATCTCTGTTAAAG
* * * * * *
36517956 GAAGCATTTGTTGCGATATCTATAAAAT
1 GAAGCCTTTGTGGCGATCTCTGTTAAAG
* * * *
36517984 AAAGCCTTTGTGGCTATCTTTG-AAAAG
1 GAAGCCTTTGTGGCGATCTCTGTTAAAG
36518011 GAATGCCTT
1 GAA-GCCTT
36518020 CATGGTACAG
Statistics
Matches: 190, Mismatches: 41, Indels: 2
0.82 0.18 0.01
Matches are distributed among these distances:
27 6 0.03
28 184 0.97
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.34
Consensus pattern (28 bp):
GAAGCCTTTGTGGCGATCTCTGTTAAAG
Found at i:36520976 original size:21 final size:20
Alignment explanation
Indices: 36520950--36520993 Score: 70
Period size: 20 Copynumber: 2.1 Consensus size: 20
36520940 CGGGTACTCA
36520950 AAATTTTTTTCAAAAAATATT
1 AAATTTTTTT-AAAAAATATT
*
36520971 AAATTTTTTTGAAAAATATT
1 AAATTTTTTTAAAAAATATT
36520991 AAA
1 AAA
36520994 AATTTTCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.45
Consensus pattern (20 bp):
AAATTTTTTTAAAAAATATT
Found at i:36520979 original size:20 final size:20
Alignment explanation
Indices: 36520954--36521003 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
36520944 TACTCAAAAT
36520954 TTTTTTCAAAAAATATTAAA
1 TTTTTTCAAAAAATATTAAA
**
36520974 TTTTTTTGAAAAATATTAAA
1 TTTTTTCAAAAAATATTAAA
**
36520994 AATTTTCAAA
1 TTTTTTCAAA
36521004 GGTGCAGGGG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (20 bp):
TTTTTTCAAAAAATATTAAA
Found at i:36523935 original size:22 final size:22
Alignment explanation
Indices: 36523910--36523965 Score: 78
Period size: 22 Copynumber: 2.5 Consensus size: 22
36523900 TGATGAAGGT
*
36523910 GATATCGCGATACCCT-GAAGAG
1 GATATTGCGATA-CCTAGAAGAG
*
36523932 GATATTGTGATACCTAGAAGAG
1 GATATTGCGATACCTAGAAGAG
36523954 GATATTGCGATA
1 GATATTGCGATA
36523966 TCTTGGGCAG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
21 3 0.10
22 27 0.90
ACGTcount: A:0.34, C:0.14, G:0.27, T:0.25
Consensus pattern (22 bp):
GATATTGCGATACCTAGAAGAG
Found at i:36525088 original size:18 final size:17
Alignment explanation
Indices: 36525067--36525103 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
36525057 TGATCCTCAC
*
36525067 TTTTCTTTCTTTCATTTT
1 TTTTCTTTCTCTC-TTTT
36525085 TTTTCTTTCTCTCTTTT
1 TTTTCTTTCTCTCTTTT
36525102 TT
1 TT
36525104 CAAGCATGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.03, C:0.19, G:0.00, T:0.78
Consensus pattern (17 bp):
TTTTCTTTCTCTCTTTT
Found at i:36532138 original size:9 final size:9
Alignment explanation
Indices: 36532124--36532165 Score: 66
Period size: 9 Copynumber: 4.6 Consensus size: 9
36532114 GAGGAGTCTG
36532124 TGCATAAGT
1 TGCATAAGT
36532133 TGCATAAGT
1 TGCATAAGT
*
36532142 TGCATGAGT
1 TGCATAAGT
36532151 TGCATAAGT
1 TGCATAAGT
36532160 CTGCAT
1 -TGCAT
36532166 GTTGAGTCTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
9 25 0.83
10 5 0.17
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.33
Consensus pattern (9 bp):
TGCATAAGT
Found at i:36532357 original size:56 final size:54
Alignment explanation
Indices: 36532241--36532448 Score: 177
Period size: 54 Copynumber: 3.8 Consensus size: 54
36532231 GCCATGGTAA
** * * * * * * *
36532241 GAAGACCGTATAGTGTAAAACCTAGTCTAGGATTATGGCATCATATAGAGA-AGT
1 GAAGACCACATAGTATAAGACCTAGTTTGGGACTATGGCATCATATGGGGATA-T
* * * *
36532295 GGAGACCATATAGTATAAGACCTA-TTCATGGTGGCTATTGCATCATATGGGGATAT
1 GAAGACCACATAGTATAAGACCTAGTT--TGG-GACTATGGCATCATATGGGGATAT
* * * *
36532351 GAAGACCGCATATTGTAAGACCTAGTTTGGGACTATGGCATCATGTGGGGATAT
1 GAAGACCACATAGTATAAGACCTAGTTTGGGACTATGGCATCATATGGGGATAT
* * * *
36532405 GAAGACCGCATATTGTAAGACCTAGTTTGGGACTATGGCGTCAT
1 GAAGACCACATAGTATAAGACCTAGTTTGGGACTATGGCATCAT
36532449 GTGCGAAAAA
Statistics
Matches: 129, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
53 1 0.01
54 84 0.65
55 5 0.04
56 36 0.28
57 3 0.02
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (54 bp):
GAAGACCACATAGTATAAGACCTAGTTTGGGACTATGGCATCATATGGGGATAT
Found at i:36532402 original size:54 final size:54
Alignment explanation
Indices: 36532329--36532451 Score: 219
Period size: 54 Copynumber: 2.3 Consensus size: 54
36532319 TTCATGGTGG
* *
36532329 CTATTGCATCATATGGGGATATGAAGACCGCATATTGTAAGACCTAGTTTGGGA
1 CTATGGCATCATGTGGGGATATGAAGACCGCATATTGTAAGACCTAGTTTGGGA
36532383 CTATGGCATCATGTGGGGATATGAAGACCGCATATTGTAAGACCTAGTTTGGGA
1 CTATGGCATCATGTGGGGATATGAAGACCGCATATTGTAAGACCTAGTTTGGGA
*
36532437 CTATGGCGTCATGTG
1 CTATGGCATCATGTG
36532452 CGAAAAATGA
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 66 1.00
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (54 bp):
CTATGGCATCATGTGGGGATATGAAGACCGCATATTGTAAGACCTAGTTTGGGA
Found at i:36532720 original size:29 final size:28
Alignment explanation
Indices: 36532684--36532756 Score: 94
Period size: 28 Copynumber: 2.6 Consensus size: 28
36532674 TAAAGTGGAT
*
36532684 GCCTTTGTGGCTGATTCTAT-TTTATGAGA
1 GCCTTTGTGGCTGATT-T-TGTGTATGAGA
36532713 GCCTTTGTGGCTGATTTTGTGTATGAGA
1 GCCTTTGTGGCTGATTTTGTGTATGAGA
* *
36532741 ACCCTTGTGGCTGATT
1 GCCTTTGTGGCTGATT
36532757 ATGTTGAATG
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
27 1 0.03
28 23 0.57
29 16 0.40
ACGTcount: A:0.15, C:0.15, G:0.27, T:0.42
Consensus pattern (28 bp):
GCCTTTGTGGCTGATTTTGTGTATGAGA
Found at i:36537704 original size:21 final size:21
Alignment explanation
Indices: 36537675--36537738 Score: 92
Period size: 21 Copynumber: 3.0 Consensus size: 21
36537665 GAGGTGATCA
* *
36537675 CGGGCCGGGCCGGGCTAGGTT
1 CGGGCCGGGCCGGGCCAAGTT
* *
36537696 CGGGTCGGGTCGGGCCAAGTT
1 CGGGCCGGGCCGGGCCAAGTT
36537717 CGGGCCGGGCCGGGCCAAGTT
1 CGGGCCGGGCCGGGCCAAGTT
36537738 C
1 C
36537739 AGACCGAGTC
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.08, C:0.30, G:0.48, T:0.14
Consensus pattern (21 bp):
CGGGCCGGGCCGGGCCAAGTT
Found at i:36537874 original size:26 final size:28
Alignment explanation
Indices: 36537844--36537905 Score: 74
Period size: 28 Copynumber: 2.2 Consensus size: 28
36537834 AACACCAAAA
36537844 ATTTATTTTAAAA-AATAAAAAAAATAT
1 ATTTATTTTAAAATAATAAAAAAAATAT
** *
36537871 -TTTAAAATTAAAATAATAAAAAATATAT
1 ATTT-ATTTTAAAATAATAAAAAAAATAT
36537899 ATTTATT
1 ATTTATT
36537906 ATATTCGGGC
Statistics
Matches: 27, Mismatches: 5, Indels: 5
0.73 0.14 0.14
Matches are distributed among these distances:
26 3 0.11
27 7 0.26
28 14 0.52
29 3 0.11
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (28 bp):
ATTTATTTTAAAATAATAAAAAAAATAT
Found at i:36540098 original size:28 final size:28
Alignment explanation
Indices: 36540067--36540229 Score: 154
Period size: 28 Copynumber: 5.8 Consensus size: 28
36540057 AAAACTCTAG
36540067 AAAGGTAAACCTTTGTGGCAAACCTGTT
1 AAAGGTAAACCTTTGTGGCAAACCTGTT
* *
36540095 AAAGG-AGAGCCTTTGTGGCAAAACTCTG-A
1 AAAGGTA-AACCTTTGTGGC-AAAC-CTGTT
* *
36540124 AAAGGTAAGCCTTTGTGGCGAACCTGTT
1 AAAGGTAAACCTTTGTGGCAAACCTGTT
* ** * *
36540152 AAAGG-ATAGCCTTTGTGAAAAAATCTG-G
1 AAAGGTA-AACCTTTGTG-GCAAACCTGTT
36540180 AAAGGTAAACCTTTGTGGCAAACCTGTT
1 AAAGGTAAACCTTTGTGGCAAACCTGTT
**
36540208 AAAGGGCAACCTTTGTGGCAAA
1 AAAGGTAAACCTTTGTGGCAAA
36540230 TCTCTAAAAG
Statistics
Matches: 110, Mismatches: 16, Indels: 18
0.76 0.11 0.12
Matches are distributed among these distances:
27 11 0.10
28 68 0.62
29 27 0.25
30 4 0.04
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (28 bp):
AAAGGTAAACCTTTGTGGCAAACCTGTT
Found at i:36540121 original size:57 final size:57
Alignment explanation
Indices: 36540057--36540244 Score: 251
Period size: 57 Copynumber: 3.4 Consensus size: 57
36540047 GTCAGGACTA
36540057 AAAACTCTAGAAAGGTAAACCTTTGTGGCAAACCTGTTAAAGGAGAGCCTTTGTGGC
1 AAAACTCTAGAAAGGTAAACCTTTGTGGCAAACCTGTTAAAGGAGAGCCTTTGTGGC
* * * *
36540114 AAAACTCT-GAAAAGGTAAGCCTTTGTGGCGAACCTGTTAAAGGATAGCCTTTGT-GA
1 AAAACTCTAG-AAAGGTAAACCTTTGTGGCAAACCTGTTAAAGGAGAGCCTTTGTGGC
* * *
36540170 AAAAATCTGGAAAGGTAAACCTTTGTGGCAAACCTGTTAAAGG-GCAACCTTTGTGGC
1 AAAACTCTAGAAAGGTAAACCTTTGTGGCAAACCTGTTAAAGGAG-AGCCTTTGTGGC
*
36540227 AAATCTCTA-AAAGG-AAAC
1 AAAACTCTAGAAAGGTAAAC
36540245 ACCTTATGGT
Statistics
Matches: 114, Mismatches: 13, Indels: 10
0.83 0.09 0.07
Matches are distributed among these distances:
55 4 0.04
56 53 0.46
57 57 0.50
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.24
Consensus pattern (57 bp):
AAAACTCTAGAAAGGTAAACCTTTGTGGCAAACCTGTTAAAGGAGAGCCTTTGTGGC
Found at i:36540267 original size:113 final size:113
Alignment explanation
Indices: 36540056--36540270 Score: 292
Period size: 113 Copynumber: 1.9 Consensus size: 113
36540046 CGTCAGGACT
* *
36540056 AAAAACTCTAGAAAGGTAAACCTTTGTGGCAAACCTGTTAAAGGAGAGCCTTTGTGGCAAAACTC
1 AAAAAATCTAGAAAGGTAAACCTTTGTGGCAAACCTGTTAAAGGAGAACCTTTGTGGCAAAACTC
* * * *
36540121 TGAAAAGGTAAGCCTTTGTGGCGAACCTGTTAAAGGATAGCCTTTGTG
66 TGAAAAGGTAAACCCTTATGGCGAACCTATTAAAGGATAGCCTTTGTG
* *
36540169 AAAAAATCTGGAAAGGTAAACCTTTGTGGCAAACCTGTTAAAGG-GCAACCTTTGTGGCAAATCT
1 AAAAAATCTAGAAAGGTAAACCTTTGTGGCAAACCTGTTAAAGGAG-AACCTTTGTGGCAAAACT
* *
36540233 CT-AAAAGG-AAACACCTTATGGTGACCTCTATTAAAGGA
65 CTGAAAAGGTAAAC-CCTTATGGCGAAC-CTATTAAAGGA
36540271 AAGTCTCTAT
Statistics
Matches: 89, Mismatches: 10, Indels: 6
0.85 0.10 0.06
Matches are distributed among these distances:
111 3 0.03
112 16 0.18
113 70 0.79
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (113 bp):
AAAAAATCTAGAAAGGTAAACCTTTGTGGCAAACCTGTTAAAGGAGAACCTTTGTGGCAAAACTC
TGAAAAGGTAAACCCTTATGGCGAACCTATTAAAGGATAGCCTTTGTG
Found at i:36541905 original size:50 final size:50
Alignment explanation
Indices: 36541781--36542029 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
36541771 GATAATAACA
* * ** * *
36541781 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
36541832 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
36541882 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
36541932 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
36541987 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
36542030 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:36541959 original size:100 final size:104
Alignment explanation
Indices: 36541780--36542029 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
36541770 TGATAATAAC
**
36541780 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
36541845 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
36541882 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
36541945 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
36541987 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
36542030 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:36542145 original size:13 final size:13
Alignment explanation
Indices: 36542124--36542155 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
36542114 GCTTGGATCA
*
36542124 TCATCAAATAAAT
1 TCATAAAATAAAT
36542137 TCATAAAATAAAT
1 TCATAAAATAAAT
36542150 TCATAA
1 TCATAA
36542156 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:36542401 original size:30 final size:30
Alignment explanation
Indices: 36542366--36542423 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
36542356 CCTCGACTCT
*
36542366 AACTTTTTCAAAATTACAATTTTT-CCCCTA
1 AACTTTTACAAAATTAC-ATTTTTGCCCCTA
*
36542396 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACATTTTTGCCCC
36542424 AAGTCTCGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 6 0.24
30 19 0.76
ACGTcount: A:0.31, C:0.24, G:0.02, T:0.43
Consensus pattern (30 bp):
AACTTTTACAAAATTACATTTTTGCCCCTA
Found at i:36549247 original size:14 final size:14
Alignment explanation
Indices: 36549224--36549258 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
36549214 TTATTTTTAA
*
36549224 TATATGTATATTTT
1 TATATATATATTTT
36549238 TATATATATATTTT
1 TATATATATATTTT
36549252 TA-ATATA
1 TATATATA
36549259 CTTACATACT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 5 0.25
14 15 0.75
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (14 bp):
TATATATATATTTT
Found at i:36549610 original size:14 final size:16
Alignment explanation
Indices: 36549578--36549613 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
36549568 ATACACATAC
36549578 ATATACATACTTTTAT
1 ATATACATACTTTTAT
**
36549594 ATATACATGTTTTTAT
1 ATATACATACTTTTAT
36549610 ATAT
1 ATAT
36549614 TTCTATAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.36, C:0.08, G:0.03, T:0.53
Consensus pattern (16 bp):
ATATACATACTTTTAT
Found at i:36549778 original size:35 final size:34
Alignment explanation
Indices: 36549733--36549841 Score: 84
Period size: 35 Copynumber: 3.2 Consensus size: 34
36549723 TTTATGTACA
*
36549733 TGTTTGTTATTGTTTTTCTTACTTTAGTTTTTATC
1 TGTTTATTATTGTTTTTCTTACTTTAGTTTTTA-C
* *
36549768 TGTTTATTATT-TTGTTCGTTTA-TTTA---TGTAC
1 TGTTTATTATTGTTTTTC--TTACTTTAGTTTTTAC
* * *
36549799 ATGTTTGTTATTGTTTTTCTTGCTTTAGTTTTTGCC
1 -TGTTTATTATTGTTTTTCTTACTTTAGTTTTT-AC
36549835 TGTTTAT
1 TGTTTAT
36549842 CATTTGTCAT
Statistics
Matches: 56, Mismatches: 9, Indels: 18
0.67 0.11 0.22
Matches are distributed among these distances:
31 3 0.05
32 17 0.30
33 5 0.09
34 5 0.09
35 22 0.39
36 4 0.07
ACGTcount: A:0.12, C:0.08, G:0.14, T:0.66
Consensus pattern (34 bp):
TGTTTATTATTGTTTTTCTTACTTTAGTTTTTAC
Found at i:36549856 original size:16 final size:16
Alignment explanation
Indices: 36549835--36549868 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
36549825 AGTTTTTGCC
36549835 TGTTTATCATTTGTCA
1 TGTTTATCATTTGTCA
36549851 TGTTTATCATTTGTCA
1 TGTTTATCATTTGTCA
36549867 TG
1 TG
36549869 ATGTCTGCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.18, C:0.12, G:0.15, T:0.56
Consensus pattern (16 bp):
TGTTTATCATTTGTCA
Found at i:36549857 original size:67 final size:67
Alignment explanation
Indices: 36549712--36549846 Score: 234
Period size: 67 Copynumber: 2.0 Consensus size: 67
36549702 TTTGTTAGTC
* *
36549712 TTGTTCGTTTATTTATGTACATGTTTGTTATTGTTTTTCTTACTTTAGTTTTTATCTGTTTATTA
1 TTGTTCGTTTATTTATGTACATGTTTGTTATTGTTTTTCTTACTTTAGTTTTTACCTGTTTATCA
36549777 TT
66 TT
* *
36549779 TTGTTCGTTTATTTATGTACATGTTTGTTATTGTTTTTCTTGCTTTAGTTTTTGCCTGTTTATCA
1 TTGTTCGTTTATTTATGTACATGTTTGTTATTGTTTTTCTTACTTTAGTTTTTACCTGTTTATCA
36549844 TT
66 TT
36549846 T
1 T
36549847 GTCATGTTTA
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
67 64 1.00
ACGTcount: A:0.13, C:0.09, G:0.13, T:0.64
Consensus pattern (67 bp):
TTGTTCGTTTATTTATGTACATGTTTGTTATTGTTTTTCTTACTTTAGTTTTTACCTGTTTATCA
TT
Found at i:36550337 original size:109 final size:109
Alignment explanation
Indices: 36550200--36550520 Score: 486
Period size: 109 Copynumber: 3.0 Consensus size: 109
36550190 AATTTTTCTA
*
36550200 AAAAATTTCAAAATAAGGTAATGTTTTGCGTTTGGAAATTCGAGGAAACATGCCCTAAGGTGCTG
1 AAAAATTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGGAAACATGCCCTAAGGTGCTG
*
36550265 GGTGTCGATTTTTCTCGTTCGACCAAATAGCTAAATATCCTTTC
66 GGTGTCGATTTTTCTCGTTCAACCAAATAGCTAAATATCCTTTC
* * *
36550309 AAAAATTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCTTAAGGTGTTG
1 AAAAATTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGGAAACATGCCCTAAGGTGCTG
*
36550374 GGTGTTGATTTTTCTCGTTCAACCAAATAGCTAAATATCCTTTC
66 GGTGTCGATTTTTCTCGTTCAACCAAATAGCTAAATATCCTTTC
* * * *
36550418 AAAAATTTTAAAATAAGGCAATGTTTTGCGTTTAGAAATTCGAGG-AACGTGCCCTAAGATGCTG
1 AAAAATTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGGAAACATGCCCTAAGGTGCTG
* * * * *
36550482 GGTTTCGA--TTTCTCGTTTAACTAAATTGCCAAATATCCT
66 GGTGTCGATTTTTCTCGTTCAACCAAATAGCTAAATATCCT
36550521 CTTGAATTTT
Statistics
Matches: 193, Mismatches: 19, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
106 27 0.14
108 21 0.11
109 145 0.75
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (109 bp):
AAAAATTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGGAAACATGCCCTAAGGTGCTG
GGTGTCGATTTTTCTCGTTCAACCAAATAGCTAAATATCCTTTC
Found at i:36554322 original size:37 final size:40
Alignment explanation
Indices: 36554240--36554324 Score: 104
Period size: 40 Copynumber: 2.1 Consensus size: 40
36554230 TATTTTTATT
* *
36554240 AATTCATATTTTAATAATAATTACATTAAGAATGTATTATTA
1 AATT-ATATTTTAATAATAATTACATTAAGAA-GTATGATAA
*
36554282 AATTATA-TTTAATAATAATTATATTAA-AA-TATGATAA
1 AATTATATTTTAATAATAATTACATTAAGAAGTATGATAA
36554319 AATTAT
1 AATTAT
36554325 TTATTTTTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
37 12 0.30
39 2 0.05
40 19 0.47
41 3 0.08
42 4 0.10
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.45
Consensus pattern (40 bp):
AATTATATTTTAATAATAATTACATTAAGAAGTATGATAA
Found at i:36564606 original size:322 final size:324
Alignment explanation
Indices: 36564020--36564673 Score: 1150
Period size: 322 Copynumber: 2.0 Consensus size: 324
36564010 TTATAAAAGC
* *
36564020 TTATCATATAATATTGATGCTTAAAAGTTTGTGTAAAGAATTTTACAATATCATAATACCCTGGT
1 TTATCATATAACATTGATGCTTAAAAGTTTGTGTAAAGAAGTTTACAATATCATAATACCCTGGT
* *
36564085 ATATAGATTAAGAACTTTGGGTATTAAAAGAAGTATAAAAAAGAAGAAGAAAGAGGACATGAATT
66 ATATAGATTAAGAACTTTGGGTATTAAAAGAAGTACAAAAAAGAAAAAGAAAGAGGACATGAATT
* * *
36564150 TGGAACATCATAAATATGGTGGAAGCAATAAACTGAATGCACCCAGTGGGTTAGCATAAGACTCC
131 TGAAACATCATAAATATGGTGGAAGCAATAAACCGAATGCACCCAGTAGGTTAGCATAAGACTCC
* *
36564215 TACTTTGTTATCTTTACGGCCTTCTCAATTATCCATACCAATAAACATAATTTTACATAGGAATA
196 TACTTCGTTATCTTTACGGCCTTCACAATTATCCATACCAATAAACATAATTTTACATAGGAATA
36564280 CTAGTAACCAAGCTGAATCTCCTTTTATCTGCTTGCAAACCACCAAATCAAAGTGAATG-TAAT
261 CTAGTAACCAAGCTGAATCTCCTTTTATCTGCTTGCAAACCACCAAATCAAAGTGAATGATAAT
* * *
36564343 TTATCATATAACATTGATGCTTAAAGGTTTGTGTAAAGAAGTTTACTATATCATAATACTCTGGT
1 TTATCATATAACATTGATGCTTAAAAGTTTGTGTAAAGAAGTTTACAATATCATAATACCCTGGT
* *
36564408 ATATAGATTAAGAACTTTGGGTCTTGAAAGAAGTACAAAAAA-AAAAAGAAAGAGGACATGAATT
66 ATATAGATTAAGAACTTTGGGTATTAAAAGAAGTACAAAAAAGAAAAAGAAAGAGGACATGAATT
36564472 TGAAACATCATAAATATGGTGGAAGCAATAAACCGAATGCACCCAGTAGGTTAGCATAAGACTCC
131 TGAAACATCATAAATATGGTGGAAGCAATAAACCGAATGCACCCAGTAGGTTAGCATAAGACTCC
*
36564537 TACTTCGTTATCTTTATGGCCTTCACAATTATCCATACCAATAAACATAATTTTACATAGGAATA
196 TACTTCGTTATCTTTACGGCCTTCACAATTATCCATACCAATAAACATAATTTTACATAGGAATA
36564602 CTAGTAACCAAGCTGAATCTCCTTTTATCTGCTTGCAAACCACCAAATCAAAGTGAATGTATAAT
261 CTAGTAACCAAGCTGAATCTCCTTTTATCTGCTTGCAAACCACCAAATCAAAGTGAATG-ATAAT
36564667 TTATCAT
1 TTATCAT
36564674 TTATCACTAT
Statistics
Matches: 314, Mismatches: 15, Indels: 3
0.95 0.05 0.01
Matches are distributed among these distances:
322 204 0.65
323 99 0.32
324 11 0.04
ACGTcount: A:0.39, C:0.16, G:0.15, T:0.30
Consensus pattern (324 bp):
TTATCATATAACATTGATGCTTAAAAGTTTGTGTAAAGAAGTTTACAATATCATAATACCCTGGT
ATATAGATTAAGAACTTTGGGTATTAAAAGAAGTACAAAAAAGAAAAAGAAAGAGGACATGAATT
TGAAACATCATAAATATGGTGGAAGCAATAAACCGAATGCACCCAGTAGGTTAGCATAAGACTCC
TACTTCGTTATCTTTACGGCCTTCACAATTATCCATACCAATAAACATAATTTTACATAGGAATA
CTAGTAACCAAGCTGAATCTCCTTTTATCTGCTTGCAAACCACCAAATCAAAGTGAATGATAAT
Found at i:36564758 original size:25 final size:25
Alignment explanation
Indices: 36564730--36564780 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
36564720 GGACCTAAGC
36564730 ATGCATTTCAGCCTTCTCATATGTT
1 ATGCATTTCAGCCTTCTCATATGTT
36564755 ATGCATTTCAGCCTTCTCATATGTT
1 ATGCATTTCAGCCTTCTCATATGTT
36564780 A
1 A
36564781 ACTTCTATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.22, C:0.24, G:0.12, T:0.43
Consensus pattern (25 bp):
ATGCATTTCAGCCTTCTCATATGTT
Found at i:36566903 original size:18 final size:20
Alignment explanation
Indices: 36566880--36566920 Score: 59
Period size: 18 Copynumber: 2.1 Consensus size: 20
36566870 AATTAAAAAC
*
36566880 TATAATGTAA-ATAT-ATTT
1 TATAATATAAGATATAATTT
36566898 TATAATATAAGATATAATTT
1 TATAATATAAGATATAATTT
36566918 TAT
1 TAT
36566921 TTAGTACATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 9 0.45
19 4 0.20
20 7 0.35
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (20 bp):
TATAATATAAGATATAATTT
Found at i:36567005 original size:24 final size:24
Alignment explanation
Indices: 36566971--36567016 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
36566961 GTTTAACTAC
*
36566971 ATGCATGTAATTTTAGTCTTACTT
1 ATGCATATAATTTTAGTCTTACTT
36566995 ATGCATATAATTTTAGTCTTAC
1 ATGCATATAATTTTAGTCTTAC
36567017 AAGTGATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.28, C:0.13, G:0.11, T:0.48
Consensus pattern (24 bp):
ATGCATATAATTTTAGTCTTACTT
Found at i:36567705 original size:151 final size:149
Alignment explanation
Indices: 36567464--36567748 Score: 346
Period size: 151 Copynumber: 1.9 Consensus size: 149
36567454 ACCTAAAGCT
* * * * *
36567464 TAAACTTGTAACTAATTTTATAGTAGATTATAATATACACAATCAATATCATATAATTAAGATAG
1 TAAACTTGTAACTAATCTTATAGTAAAATATAATATACACAAACAATATCATATAATTAAGATAA
* * * * **
36567529 ATTATTAATGATATGCATCACTATATATAACTATGTTCTATGTTATTATAATATATGT-TTTATA
66 ATTATTAATGATATGAACCACTATATAT-AC-A--AT-TATGATATTATAATATACATATTTATA
36567593 TTAATGATATGCACGCTTAAACCC
126 TTAATGATATGCACGCTTAAACCC
* * *
36567617 TAAACTTGTAACTAA-CTTATGGTAAAATA-AATTATATACAAACAATAT-ATATAATTAAGGTA
1 TAAACTTGTAACTAATCTTATAGTAAAATATAA-TATACACAAACAATATCATATAATTAAGATA
36567679 AATTATTAATGATATGTAACCA-TATATATACAATTATGATATTATAATATACATATTTATATTA
65 AATTATTAATGATATG-AACCACTATATATACAATTATGATATTATAATATACATATTTATATTA
36567743 ATGATA
129 ATGATA
36567749 CACAACATTA
Statistics
Matches: 115, Mismatches: 14, Indels: 12
0.82 0.10 0.09
Matches are distributed among these distances:
146 17 0.15
147 16 0.14
149 1 0.01
150 2 0.02
151 37 0.32
152 27 0.23
153 15 0.13
ACGTcount: A:0.44, C:0.09, G:0.08, T:0.40
Consensus pattern (149 bp):
TAAACTTGTAACTAATCTTATAGTAAAATATAATATACACAAACAATATCATATAATTAAGATAA
ATTATTAATGATATGAACCACTATATATACAATTATGATATTATAATATACATATTTATATTAAT
GATATGCACGCTTAAACCC
Found at i:36567780 original size:147 final size:152
Alignment explanation
Indices: 36567496--36567781 Score: 331
Period size: 151 Copynumber: 1.9 Consensus size: 152
36567486 GTAGATTATA
* * *
36567496 ATATACACAATCAATATCATATAATTAAGATAGATTATTAATGATATGCATCACTATATATAACT
1 ATATACACAATCAATATCATATAATTAAGATAAATTATTAATGATATGAACCACTATATATAACT
* * ** * * *
36567561 ATGTTCTATGTTATTATAATATATGTTTTATATTAATGATATGCACGCTTAAACCCTAAACTTGT
66 A-GATCTATGATATTATAATATACATTTTATATTAATGATA-GCACACTTAAACCCTAAAATTGC
36567626 AACTAACTTATGGTAAAATAAATT
129 AACTAACTTATGGTAAAATAAATT
*
36567650 ATATACA-AA-CAATAT-ATATAATTAAGGTAAATTATTAATGATATGTAACCA-TATATAT-AC
1 ATATACACAATCAATATCATATAATTAAGATAAATTATTAATGATATG-AACCACTATATATAAC
36567710 -A-AT-TATGATATTATAATATACATATTTATATTAATGATA-CACAACATTAAACCC-AAAATG
65 TAGATCTATGATATTATAATATACAT-TTTATATTAATGATAGCAC-AC-TTAAACCCTAAAAT-
*
36567770 TGCAATTAACTT
126 TGCAACTAACTT
36567782 CATGATACAT
Statistics
Matches: 115, Mismatches: 12, Indels: 17
0.80 0.08 0.12
Matches are distributed among these distances:
145 3 0.03
146 22 0.19
147 34 0.30
149 1 0.01
150 2 0.02
151 35 0.30
152 9 0.08
153 2 0.02
154 7 0.06
ACGTcount: A:0.44, C:0.11, G:0.07, T:0.37
Consensus pattern (152 bp):
ATATACACAATCAATATCATATAATTAAGATAAATTATTAATGATATGAACCACTATATATAACT
AGATCTATGATATTATAATATACATTTTATATTAATGATAGCACACTTAAACCCTAAAATTGCAA
CTAACTTATGGTAAAATAAATT
Found at i:36582027 original size:42 final size:42
Alignment explanation
Indices: 36581968--36582055 Score: 167
Period size: 42 Copynumber: 2.1 Consensus size: 42
36581958 TGTGGAGGTC
36581968 CATTTAGAGGCATAGGTGTGGAGGTCCATTTACTTTTCGTTG
1 CATTTAGAGGCATAGGTGTGGAGGTCCATTTACTTTTCGTTG
*
36582010 CATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTTTTCGTTG
1 CATTTAGAGGCATAGGTGTGGAGGTCCATTTACTTTTCGTTG
36582052 CATT
1 CATT
36582056 GTATATGAAG
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.18, C:0.16, G:0.27, T:0.39
Consensus pattern (42 bp):
CATTTAGAGGCATAGGTGTGGAGGTCCATTTACTTTTCGTTG
Found at i:36583250 original size:21 final size:23
Alignment explanation
Indices: 36583225--36583274 Score: 61
Period size: 21 Copynumber: 2.3 Consensus size: 23
36583215 TTTTTAGTCA
36583225 TTTTAAAAG-AAAAGTTTGA-AT
1 TTTTAAAAGCAAAAGTTTGATAT
* *
36583246 TTTT-AAAGCAAAATTTTGATCT
1 TTTTAAAAGCAAAAGTTTGATAT
36583268 TTTTAAA
1 TTTTAAA
36583275 CTATTTCGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
20 4 0.17
21 13 0.54
22 5 0.21
23 2 0.08
ACGTcount: A:0.42, C:0.04, G:0.10, T:0.44
Consensus pattern (23 bp):
TTTTAAAAGCAAAAGTTTGATAT
Found at i:36583253 original size:20 final size:22
Alignment explanation
Indices: 36583224--36583274 Score: 61
Period size: 20 Copynumber: 2.4 Consensus size: 22
36583214 TTTTTTAGTC
*
36583224 ATTTTAAAAG-AAAAGTTTGA-
1 ATTTTTAAAGCAAAAGTTTGAT
*
36583244 ATTTTTAAAGCAAAATTTTGAT
1 ATTTTTAAAGCAAAAGTTTGAT
*
36583266 CTTTTTAAA
1 ATTTTTAAA
36583275 CTATTTCGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 9 0.35
21 9 0.35
22 8 0.31
ACGTcount: A:0.43, C:0.04, G:0.10, T:0.43
Consensus pattern (22 bp):
ATTTTTAAAGCAAAAGTTTGAT
Found at i:36583303 original size:154 final size:149
Alignment explanation
Indices: 36582864--36583330 Score: 491
Period size: 154 Copynumber: 3.1 Consensus size: 149
36582854 AAAAGTTTTG
* * *
36582864 ATTTTTTT-AA-AAGAAGAGAAAGTTTAGAATTTAAAAA-ATAAAAT--ATGTTTTTAGTCATTT
1 ATTTTTTTAAAGAAAAAGAGAAAGTTTAGATTTTAAAAATA-AAAATACATTTTTTTAGTCATTT
* * * *
36582924 TAAAGAAAATTTTAAAATTTTAAAACAAAGTTGTGATTTTTTTTCAACTATTTCAAAATAAAAGC
65 TAAAGAAAAGTTTAAATTTTTAAAACAAAGTTTTGA--TTTTTTCAACTATTTCAAAATAAAATC
36582989 TTTGATCTTTAA-AAAAATAAT
128 TTTGATCTTTAAGAAAAATAAT
* *
36583010 ATTTTTTTAAAGAAAAAGAGAAAGTTTGGATTTTAAAAATAAAAATATATTTTTTTAGTCATTTT
1 ATTTTTTTAAAGAAAAAGAGAAAGTTTAGATTTTAAAAATAAAAATACATTTTTTTAGTCATTTT
* * * * *
36583075 AAAGGAAAGTTTTAATTTTTAAAACAAAGTTTTAATTGTTTTCATCTATTTCAAAATAAAATATT
66 AAAGAAAAGTTTAAATTTTTAAAACAAAGTTTTGATT-TTTTCAACTATTTCAAAATAAAATCTT
*
36583140 TGATCTTTAAGAAAAATGATGTT
130 TGATCTTTAAGAAAAAT-A--AT
* * * * * * *
36583163 TTTCTTTCTTTAA-AAAAGGATAAAGTTTATATTTTTAAAATAAAAATACGTTTTTTTAGTCATT
1 ATT-TTT-TTAAAGAAAAAGAGAAAGTTTAGATTTTAAAAATAAAAATACATTTTTTTAGTCATT
* * * * *
36583227 TTAAAAGAAAAGTTTGAATTTTTAAAGCAAAATTTTGATCTTTTTAAACTATTTCGAAAT-AAAT
64 TT-AAAGAAAAGTTTAAATTTTTAAAACAAAGTTTTGAT-TTTTTCAACTATTTCAAAATAAAAT
* * *
36583291 CTTTTATTTTTAAGAAAAGTAAT
127 CTTTGATCTTTAAGAAAAATAAT
*
36583314 GATTTTTTAAAAGAAAA
1 -ATTTTTTTAAAGAAAA
36583331 TTTTGATTTT
Statistics
Matches: 266, Mismatches: 39, Indels: 27
0.80 0.12 0.08
Matches are distributed among these distances:
146 8 0.03
147 2 0.01
148 31 0.12
149 35 0.13
150 54 0.20
151 9 0.03
152 2 0.01
153 4 0.02
154 69 0.26
155 51 0.19
156 1 0.00
ACGTcount: A:0.43, C:0.05, G:0.09, T:0.43
Consensus pattern (149 bp):
ATTTTTTTAAAGAAAAAGAGAAAGTTTAGATTTTAAAAATAAAAATACATTTTTTTAGTCATTTT
AAAGAAAAGTTTAAATTTTTAAAACAAAGTTTTGATTTTTTCAACTATTTCAAAATAAAATCTTT
GATCTTTAAGAAAAATAAT
Found at i:36583813 original size:5 final size:5
Alignment explanation
Indices: 36583803--36583832 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
36583793 ACACTTATAT
36583803 CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC
1 CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC
36583833 ATTTGTATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.00, C:0.60, G:0.00, T:0.40
Consensus pattern (5 bp):
CTTCC
Found at i:36585416 original size:20 final size:22
Alignment explanation
Indices: 36585372--36585421 Score: 59
Period size: 20 Copynumber: 2.3 Consensus size: 22
36585362 GGTTTTTTAG
36585372 TATTTGTGCATATTAGATGTATT
1 TATTTGTGCA-ATTAGATGTATT
*
36585395 TATTTGTGC-ATT-GATTTATT
1 TATTTGTGCAATTAGATGTATT
*
36585415 TAATTGT
1 TATTTGT
36585422 CTAGTGTCGT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 13 0.52
21 3 0.12
23 9 0.36
ACGTcount: A:0.24, C:0.04, G:0.16, T:0.56
Consensus pattern (22 bp):
TATTTGTGCAATTAGATGTATT
Found at i:36586024 original size:21 final size:19
Alignment explanation
Indices: 36585995--36586034 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 19
36585985 ATGCTTTATG
36585995 ATTTAATTTCGTATTTTTTTA
1 ATTTAATTT--TATTTTTTTA
*
36586016 ATTTGATTTTATTTTTTTA
1 ATTTAATTTTATTTTTTTA
36586035 CTGACTTTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 10 0.56
21 8 0.44
ACGTcount: A:0.23, C:0.03, G:0.05, T:0.70
Consensus pattern (19 bp):
ATTTAATTTTATTTTTTTA
Found at i:36587463 original size:19 final size:20
Alignment explanation
Indices: 36587439--36587476 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
36587429 TTTATTCAGA
36587439 AACATTATTTAA-AAAAAAG
1 AACATTATTTAATAAAAAAG
*
36587458 AACATTTTTTAATAAAAAA
1 AACATTATTTAATAAAAAA
36587477 TCCAAATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.61, C:0.05, G:0.03, T:0.32
Consensus pattern (20 bp):
AACATTATTTAATAAAAAAG
Found at i:36603638 original size:42 final size:42
Alignment explanation
Indices: 36603562--36603873 Score: 345
Period size: 42 Copynumber: 7.2 Consensus size: 42
36603552 GAAAACATTT
* * ** *
36603562 ATTGCATTTAGAGGCCTAGGTGTAGAGACCCATTTTCTTTTC
1 ATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTTTTC
* * *
36603604 ATTGCATTTAGAGGCCCAAGTGTGGATGTTCATTTCACTTTTC
1 ATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTT-ACTTTTC
* * *
36603647 ATTGCATTTAGAGACCTAGGTGTGGAGGTCCATTCACTTTTC
1 ATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTTTTC
* * *
36603689 ATTTCATTGAGAGGCCCAGGTGTGGAGGTCCATTCACTTTTC
1 ATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTTTTC
* *
36603731 ATTGCATTTAAAGGCCCAGGTGTGGAGGTCCATTTACTCTTC
1 ATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTTTTC
* * * *
36603773 ATTACATTTAGAGGCCTAGGTGTGGAGATCCATTCACTCTTTATTGC
1 ATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTA--C-TT-TT-C
*
36603820 ATTTAGAGCATTTAGAGGCCCAGGTGTGGAGGACCATTTACTTTTC
1 A-TT---GCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTTTTC
36603866 ATTGCATT
1 ATTGCATT
36603874 GTATATGAAG
Statistics
Matches: 226, Mismatches: 34, Indels: 20
0.81 0.12 0.07
Matches are distributed among these distances:
42 146 0.65
43 35 0.15
44 1 0.00
45 3 0.01
46 4 0.02
47 4 0.02
48 4 0.02
49 1 0.00
51 28 0.12
ACGTcount: A:0.22, C:0.19, G:0.23, T:0.36
Consensus pattern (42 bp):
ATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTTTTC
Found at i:36603857 original size:51 final size:51
Alignment explanation
Indices: 36603777--36603873 Score: 144
Period size: 51 Copynumber: 1.9 Consensus size: 51
36603767 CTCTTCATTA
*
36603777 CATTTAGAGGCCTAGGTGTGGAGATCCATTCACTCTTT-ATTGCATTTAGAG
1 CATTTAGAGGCCCAGGTGTGGAGATCCATTCACT-TTTCATTGCATTTAGAG
*
36603828 CATTTAGAGGCCCAGGTGTGGAGGA-CCATTTACTTTTCATTGCATT
1 CATTTAGAGGCCCAGGTGTGGA-GATCCATTCACTTTTCATTGCATT
36603874 GTATATGAAG
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
50 3 0.07
51 37 0.88
52 2 0.05
ACGTcount: A:0.23, C:0.19, G:0.24, T:0.35
Consensus pattern (51 bp):
CATTTAGAGGCCCAGGTGTGGAGATCCATTCACTTTTCATTGCATTTAGAG
Found at i:36605062 original size:155 final size:148
Alignment explanation
Indices: 36604629--36605074 Score: 482
Period size: 147 Copynumber: 3.0 Consensus size: 148
36604619 AAAAGTTTTG
* * *
36604629 ATTTTTTT-AA-AAGAAGATAAAGTTTAGATTTTAAAAAATAAAAATATG-TTTTTTAGTCATTT
1 ATTTTTTTAAAGAAAAAGAGAAAGTTTAGATTTTAAAAAATAAAAATAAGTTTTTTTAGTCATTT
* * *
36604691 TAAA-GAAAAATTT-ATAATTTTAAAACAAAGTTTTGATTTTTCTCAACTATTTCAAAATAAAAG
66 TAAAGGAAAAGTTTAAT-TTTTTAAAACAAAATTTTGATTTTT-TCAACTATTTCAAAATAAAA-
*
36604754 CTTTGATCTTTAA-AAAAAAT
128 TTTTGATCTTTAAGAAAAAAT
*
36604774 ATTTTTTTAAAGAAAAAGAGAAAGTTTAGATTTTAAAAAATAAAAAT-A-TATATTTTAGTCATT
1 ATTTTTTTAAAGAAAAAGAGAAAGTTTAGATTTTAAAAAATAAAAATAAGT-TTTTTTAGTCATT
*** * *
36604837 TTAAAGG-AAAGTTTTAATTTTTTAAAA-ATTTTTTTAATTTTTTTTCAACTAGTTCAAAATAAA
65 TTAAAGGAAAAG-TTTAATTTTTTAAAACAAAATTTTGA--TTTTTTCAACTATTTCAAAATAAA
*
36604900 ATCTTTGATCTTTAAGAAAAATGGT
127 AT-TTTGATCTTTAAGAAAAA--AT
* *** *
36604925 GTTTTTCTTTCTTTGAAAAAGGAGAAAGTTTAGATTTT-TAAAATAAAAATAAGTTTTTTTAGTC
1 -ATTTT-TTT-AAAGAAAAA-GAGAAAGTTTAGATTTTAAAAAATAAAAATAAGTTTTTTTAGTC
*
36604989 ATTTTAAAGGAAAAGTTTGAATTTTTTAAAACAAAATTTTGATCTTTTTCAACTATTTCGAAATA
62 ATTTTAAAGGAAAAGTTT-AATTTTTTAAAACAAAATTTTGAT-TTTTTCAACTATTTCAAAATA
*
36605054 AAATTTTGATTTTTAAGAAAA
125 AAATTTTGATCTTTAAGAAAA
36605075 GTAATGATCT
Statistics
Matches: 252, Mismatches: 26, Indels: 36
0.80 0.08 0.11
Matches are distributed among these distances:
145 8 0.03
146 2 0.01
147 59 0.23
148 43 0.17
149 12 0.05
151 1 0.00
152 4 0.02
153 3 0.01
154 17 0.07
155 57 0.23
156 40 0.16
157 6 0.02
ACGTcount: A:0.43, C:0.05, G:0.09, T:0.43
Consensus pattern (148 bp):
ATTTTTTTAAAGAAAAAGAGAAAGTTTAGATTTTAAAAAATAAAAATAAGTTTTTTTAGTCATTT
TAAAGGAAAAGTTTAATTTTTTAAAACAAAATTTTGATTTTTTCAACTATTTCAAAATAAAATTT
TGATCTTTAAGAAAAAAT
Found at i:36605704 original size:22 final size:21
Alignment explanation
Indices: 36605659--36605713 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
36605649 CACTTGTATA
*
36605659 ATTTTTATTTATTCTTCTTTC
1 ATTTTTATTTATTCTTCTTCC
36605680 ATTTTTATTTATT-TTCATGTCC
1 ATTTTTATTTATTCTTC-T-TCC
*
36605702 ATTTATATTTAT
1 ATTTTTATTTAT
36605714 GTTTTTTTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
20 3 0.10
21 14 0.47
22 13 0.43
ACGTcount: A:0.20, C:0.11, G:0.02, T:0.67
Consensus pattern (21 bp):
ATTTTTATTTATTCTTCTTCC
Found at i:36608160 original size:50 final size:48
Alignment explanation
Indices: 36608081--36608224 Score: 171
Period size: 50 Copynumber: 2.9 Consensus size: 48
36608071 AAAGTGAAAG
*
36608081 TGATGGTCACGTTTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAA
1 TGATGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGG-A
* * *
36608130 TGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGA
1 TGAT-GGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGA
* * * *
36608179 TAGTTTCGATCATGTGTGTAGTACTATGTGCAGGCTACTACATGTA
1 T-G-AT-GGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTA
36608225 TCAGATGGTA
Statistics
Matches: 80, Mismatches: 12, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
49 6 0.08
50 40 0.50
51 34 0.43
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (48 bp):
TGATGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGA
Found at i:36608248 original size:51 final size:50
Alignment explanation
Indices: 36608094--36608256 Score: 154
Period size: 51 Copynumber: 3.2 Consensus size: 50
36608084 TGGTCACGTT
* **
36608094 TGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGAT-AGGT-CACATG
1 TGTAGTACTATGTGCAGGCTACTACGTGTA-CAG-ATGATAATTTCCACATG
* * * * *
36608144 TGTAGTACTATGTGCAGGCTACTATGCGTACCG--GATAGTTTCGATCATGTG
1 TGTAGTACTATGTGCAGGCTACTACGTGTACAGATGATAATTTCCA-CA--TG
* *
36608195 TGTAGTACTATGTGCAGGCTACTACATGTATCAGATGGTAATTTCCACATG
1 TGTAGTACTATGTGCAGGCTACTACGTGTA-CAGATGATAATTTCCACATG
36608246 TGTAGTACTAT
1 TGTAGTACTAT
36608257 TTGTAAGCTA
Statistics
Matches: 91, Mismatches: 14, Indels: 15
0.76 0.12 0.12
Matches are distributed among these distances:
46 3 0.03
47 1 0.01
48 1 0.01
49 4 0.04
50 28 0.31
51 42 0.46
52 2 0.02
53 2 0.02
54 8 0.09
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (50 bp):
TGTAGTACTATGTGCAGGCTACTACGTGTACAGATGATAATTTCCACATG
Found at i:36608345 original size:45 final size:45
Alignment explanation
Indices: 36608275--36608369 Score: 136
Period size: 45 Copynumber: 2.1 Consensus size: 45
36608265 TACTATGTGA
* * * * *
36608275 ACCGAACATCATTGATTAGTGAGGTGGTTGTTATGTGCTGATTCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTAAATCC
*
36608320 ACCGGACATCATTGATTAATAAGGTGGTTGCTATGTGCTAAATCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTAAATCC
36608365 ACCGA
1 ACCGA
36608370 GTATCTGTTA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (45 bp):
ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTAAATCC
Found at i:36616215 original size:50 final size:50
Alignment explanation
Indices: 36616152--36616442 Score: 291
Period size: 50 Copynumber: 5.8 Consensus size: 50
36616142 GTTTGGGTAA
* * * * *
36616152 AGAGATCCCATGTAAGACCATGTCTGGGACATGACGTTGGCATCAAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAAG
* * *
36616202 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGTACCGCGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAAG
* *
36616252 AGAGGTCCAATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAGAAG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAAG
* * * * *
36616302 AGATGTCCC-TCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATG
1 AGAGGTCCCAT-GTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAAG
** * * * * * * *
36616352 AGAACTCTCATGTAAGACCATATCTGGGATATGGCATTGGTA--GTACATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCG-AGAAG
* ** *
36616401 AAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA
36616443 TGTTATTATT
Statistics
Matches: 203, Mismatches: 35, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
48 1 0.00
49 39 0.19
50 162 0.80
51 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAAG
Found at i:36618497 original size:27 final size:27
Alignment explanation
Indices: 36618454--36618523 Score: 70
Period size: 27 Copynumber: 2.6 Consensus size: 27
36618444 AACTACCATG
*
36618454 TGTTTACTATCAC-GACAAAATACCACA
1 TGTTTACTGTC-CTGACAAAATACCACA
* * ** *
36618481 TGTTTACTGTCCTGACAGACTTTCACG
1 TGTTTACTGTCCTGACAAAATACCACA
36618508 TGTTTACTGTCCTGAC
1 TGTTTACTGTCCTGAC
36618524 GGACCACCCC
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
26 1 0.03
27 35 0.97
ACGTcount: A:0.26, C:0.26, G:0.14, T:0.34
Consensus pattern (27 bp):
TGTTTACTGTCCTGACAAAATACCACA
Found at i:36622879 original size:22 final size:21
Alignment explanation
Indices: 36622837--36622879 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 21
36622827 GGGGAGCATT
**
36622837 CAACCATCAATGTCATGACAA
1 CAACCATCAATGTCACAACAA
*
36622858 CAACCACTCAATGTCGCAACAA
1 CAACCA-TCAATGTCACAACAA
36622880 AAAACTTTGA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.42, C:0.33, G:0.09, T:0.16
Consensus pattern (21 bp):
CAACCATCAATGTCACAACAA
Found at i:36623840 original size:56 final size:56
Alignment explanation
Indices: 36623754--36623873 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
36623744 ACAAGGGATG
36623754 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
36623810 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
36623866 ATGGGCAA
1 ATGGGCAA
36623874 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:36625136 original size:79 final size:81
Alignment explanation
Indices: 36625000--36625182 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
36624990 TCGAATGATG
* *
36625000 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
36625064 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
36625079 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
36625141 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
36625159 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
36625183 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:36625198 original size:40 final size:40
Alignment explanation
Indices: 36625001--36625184 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
36624991 CGAATGATGT
* * * *
36625001 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
36625041 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
36625081 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
36625119 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
36625160 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
36625185 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:36625206 original size:79 final size:79
Alignment explanation
Indices: 36625053--36625217 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
36625043 GGACTAAGAT
* **
36625053 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
36625118 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
36625132 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
36625195 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
36625211 CCGAAGG
1 CCGAAGG
36625218 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:36631674 original size:56 final size:56
Alignment explanation
Indices: 36631604--36631722 Score: 222
Period size: 56 Copynumber: 2.1 Consensus size: 56
36631594 ACAAGGGATG
36631604 ATGGGC-AAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
36631659 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
36631715 ATGGGCAA
1 ATGGGCAA
36631723 TAAACTAATA
Statistics
Matches: 62, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
55 6 0.10
56 56 0.90
ACGTcount: A:0.45, C:0.09, G:0.24, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:36632992 original size:40 final size:40
Alignment explanation
Indices: 36632846--36633028 Score: 207
Period size: 39 Copynumber: 4.7 Consensus size: 40
36632836 TCGAATGATG
* * * *
36632846 TCCGGGCTAAGT-CCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
36632885 TCCGGACTAAGAT--CGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
36632924 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
36632963 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
36633004 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
36633029 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 15, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
39 65 0.53
40 56 0.46
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:36633050 original size:79 final size:79
Alignment explanation
Indices: 36632898--36633061 Score: 199
Period size: 79 Copynumber: 2.1 Consensus size: 79
36632888 GGACTAAGAT
* **
36632898 CGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 CGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
*
36632963 TCCGGGTTAAGTCC
66 TCCGGGTTAAATCC
* * *
36632977 CGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCT
1 CGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CT
* *
36633040 ATATCC-GGTTAAATTC
63 AAATCCGGGTTAAATCC
36633056 CGAAGG
1 CGAAGG
36633062 TACGTGATTT
Statistics
Matches: 73, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 24 0.33
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
TCCGGGTTAAATCC
Found at i:36637768 original size:49 final size:49
Alignment explanation
Indices: 36637706--36637806 Score: 166
Period size: 49 Copynumber: 2.1 Consensus size: 49
36637696 CTAATCATGC
* * *
36637706 TATACAATGCTAAACTTGGTCTTCCACTGTCTACACTGTTATCACTATT
1 TATACAATCCTAAACTTAGTCTTCCACTGTCTACACTCTTATCACTATT
*
36637755 TATACATTCCTAAACTTAGTCTTCCACTGTCTACACTCTTATCACTATT
1 TATACAATCCTAAACTTAGTCTTCCACTGTCTACACTCTTATCACTATT
36637804 TAT
1 TAT
36637807 CCCTTCTAGA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.27, C:0.26, G:0.07, T:0.41
Consensus pattern (49 bp):
TATACAATCCTAAACTTAGTCTTCCACTGTCTACACTCTTATCACTATT
Found at i:36638221 original size:30 final size:30
Alignment explanation
Indices: 36638182--36638248 Score: 98
Period size: 30 Copynumber: 2.2 Consensus size: 30
36638172 TGACTTGGGT
* *
36638182 CACACGCCCATGTGTGTTGCTCGTATGTGA
1 CACACGCCCATGTGTGTTGCCCATATGTGA
* *
36638212 CACATGCCCATGTGTGTTGCCCATGTGTGA
1 CACACGCCCATGTGTGTTGCCCATATGTGA
36638242 CACACGC
1 CACACGC
36638249 GTGTGTGGCC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.18, C:0.30, G:0.25, T:0.27
Consensus pattern (30 bp):
CACACGCCCATGTGTGTTGCCCATATGTGA
Found at i:36638234 original size:13 final size:13
Alignment explanation
Indices: 36638216--36638240 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36638206 ATGTGACACA
36638216 TGCCCATGTGTGT
1 TGCCCATGTGTGT
36638229 TGCCCATGTGTG
1 TGCCCATGTGTG
36638241 ACACACGCGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.24, G:0.32, T:0.36
Consensus pattern (13 bp):
TGCCCATGTGTGT
Done.