Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67659327
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 461372 characters in sequence are not A, C, G, or T
File 115 of 216
Found at i:36661572 original size:6 final size:6
Alignment explanation
Indices: 36661558--36661591 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
36661548 AAAATGGATT
* *
36661558 ATTTCC ATTTTC ATTTTC ATTTCC ATTTCC ATTT
1 ATTTCC ATTTCC ATTTCC ATTTCC ATTTCC ATTT
36661592 TTGGAAACCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.18, C:0.24, G:0.00, T:0.59
Consensus pattern (6 bp):
ATTTCC
Found at i:36661581 original size:18 final size:18
Alignment explanation
Indices: 36661558--36661592 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
36661548 AAAATGGATT
*
36661558 ATTTCCATTTTCATTTTC
1 ATTTCCATTTCCATTTTC
36661576 ATTTCCATTTCCATTTT
1 ATTTCCATTTCCATTTT
36661593 TGGAAACCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.17, C:0.23, G:0.00, T:0.60
Consensus pattern (18 bp):
ATTTCCATTTCCATTTTC
Found at i:36665543 original size:20 final size:20
Alignment explanation
Indices: 36665518--36665557 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
36665508 CCCTTTCTTG
36665518 CTATAGAAGAAACATTTAGA
1 CTATAGAAGAAACATTTAGA
36665538 CTATAGAAGAAACATTTAGA
1 CTATAGAAGAAACATTTAGA
36665558 GTTTGCCTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.50, C:0.10, G:0.15, T:0.25
Consensus pattern (20 bp):
CTATAGAAGAAACATTTAGA
Found at i:36672062 original size:29 final size:27
Alignment explanation
Indices: 36672044--36672113 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
36672034 ATATTAAGTC
36672044 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
36672071 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
36672099 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
36672114 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:36672107 original size:28 final size:28
Alignment explanation
Indices: 36672044--36672141 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
36672034 ATATTAAGTC
*
36672044 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
36672071 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
36672099 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
36672128 CGCACACTTAGTGC
1 CGCACACTTAGTGC
36672142 AATCTATGAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:36673937 original size:24 final size:24
Alignment explanation
Indices: 36673890--36673937 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
36673880 GATGAATTAT
* *
36673890 AATTTAAAGTATATTGGTTGAATA
1 AATTTAAAGTATAATGATTGAATA
36673914 AATTTAAAGTATGAATGATT-AATA
1 AATTTAAAGTAT-AATGATTGAATA
36673938 TACTGTTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 16 0.76
25 5 0.24
ACGTcount: A:0.46, C:0.00, G:0.15, T:0.40
Consensus pattern (24 bp):
AATTTAAAGTATAATGATTGAATA
Found at i:36693448 original size:39 final size:40
Alignment explanation
Indices: 36693366--36693465 Score: 143
Period size: 39 Copynumber: 2.6 Consensus size: 40
36693356 GAAATCTTTG
*
36693366 TTATAATTATTGTAATTATAA--TTTAGGATCAAATATTA
1 TTATAATTATTGTAATTATAATTTTTAGGATCAAACATTA
* *
36693404 TTATAATTATTGTAATTGTAATTTTTTGG-TCAAACATTA
1 TTATAATTATTGTAATTATAATTTTTAGGATCAAACATTA
*
36693443 TTATAATTATGGTAATTATAATT
1 TTATAATTATTGTAATTATAATT
36693466 ATTATATTCG
Statistics
Matches: 55, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
38 20 0.36
39 30 0.55
40 5 0.09
ACGTcount: A:0.38, C:0.03, G:0.09, T:0.50
Consensus pattern (40 bp):
TTATAATTATTGTAATTATAATTTTTAGGATCAAACATTA
Found at i:36707786 original size:50 final size:50
Alignment explanation
Indices: 36707676--36707877 Score: 264
Period size: 50 Copynumber: 4.0 Consensus size: 50
36707666 GCATTAAGAG
* *
36707676 GATGAGA--TCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCATTGA
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGA
*
36707727 GATTATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGA
1 G---ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGA
* *
36707780 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAA
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGA
** *
36707830 GATGAGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACC
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACC
36707878 TATATAAGAA
Statistics
Matches: 138, Mismatches: 8, Indels: 11
0.88 0.05 0.07
Matches are distributed among these distances:
50 92 0.67
51 1 0.01
53 3 0.02
54 6 0.04
55 1 0.01
56 35 0.25
ACGTcount: A:0.26, C:0.22, G:0.31, T:0.21
Consensus pattern (50 bp):
GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGA
Found at i:36708842 original size:29 final size:29
Alignment explanation
Indices: 36708533--36708909 Score: 371
Period size: 29 Copynumber: 13.0 Consensus size: 29
36708523 GACATTCATT
* * * *
36708533 TAACAAAGATAGCCACAAAGGCATCCTCTA
1 TAACAGAGATCGCCACAAAGGCTTTCT-TA
* * * * *
36708563 -GACAGAGATCACCACAAATGCATCCTTA
1 TAACAGAGATCGCCACAAAGGCTTTCTTA
* * * *
36708591 TAATAGAGATCGCCACAAATGCATCCTTA
1 TAACAGAGATCGCCACAAAGGCTTTCTTA
* *
36708620 TAACAGAGATCGCCACAAATGATTTCTTA
1 TAACAGAGATCGCCACAAAGGCTTTCTTA
*
36708649 TAACAGAGATTGCCACAAAGGCTTTCTTA
1 TAACAGAGATCGCCACAAAGGCTTTCTTA
*
36708678 TAACAGGGATCGCCACAAAGGCTTT-TTAA
1 TAACAGAGATCGCCACAAAGGCTTTCTT-A
* * * *
36708707 TAACGGAGATCACCATAAAGGATTTCTTA
1 TAACAGAGATCGCCACAAAGGCTTTCTTA
* * *
36708736 TAACAGAGATTGTCAAAAAGGCTTTCTTA
1 TAACAGAGATCGCCACAAAGGCTTTCTTA
*
36708765 TAACAGAGATTGCCACAAAGGCTTTCTTA
1 TAACAGAGATCGCCACAAAGGCTTTCTTA
*
36708794 TAACAGAGATCGTCACAAAGGCTTTCTTA
1 TAACAGAGATCGCCACAAAGGCTTTCTTA
** * *
36708823 TAACAGAGATCATCAAAAAGGCTTTCTCA
1 TAACAGAGATCGCCACAAAGGCTTTCTTA
* * * *
36708852 TAACAAATATCCCCACAAAGGCTTTTTTA
1 TAACAGAGATCGCCACAAAGGCTTTCTTA
* * * * *
36708881 TGATAGAGTTTGCCACAAAAGCTTTCTTA
1 TAACAGAGATCGCCACAAAGGCTTTCTTA
36708910 CGGAAACTTC
Statistics
Matches: 293, Mismatches: 51, Indels: 7
0.83 0.15 0.02
Matches are distributed among these distances:
28 4 0.01
29 287 0.98
30 2 0.01
ACGTcount: A:0.37, C:0.21, G:0.15, T:0.26
Consensus pattern (29 bp):
TAACAGAGATCGCCACAAAGGCTTTCTTA
Found at i:36710656 original size:19 final size:18
Alignment explanation
Indices: 36710610--36710658 Score: 62
Period size: 18 Copynumber: 2.6 Consensus size: 18
36710600 GATAGAATTT
*
36710610 TTGTCATAAAATAATTAAT
1 TTGT-ATAAAATAATTAAA
*
36710629 TTTTATAAAATAATTAAA
1 TTGTATAAAATAATTAAA
36710647 TTGTATTAAAAT
1 TTGTA-TAAAAT
36710659 TTTGAAAATG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
18 17 0.65
19 9 0.35
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.45
Consensus pattern (18 bp):
TTGTATAAAATAATTAAA
Found at i:36721876 original size:19 final size:18
Alignment explanation
Indices: 36721835--36721882 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
36721825 AATTTTTGTC
* *
36721835 ATAAAATAATTAATTTTT
1 ATAAAATAATTAAATTAT
36721853 ATAAAATAATTAAATTAT
1 ATAAAATAATTAAATTAT
*
36721871 ATTAAAAAAATT
1 A-TAAAATAATT
36721883 GAACATGGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 17 0.65
19 9 0.35
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (18 bp):
ATAAAATAATTAAATTAT
Found at i:36722511 original size:14 final size:14
Alignment explanation
Indices: 36722488--36722517 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
36722478 CATCCCTCAT
*
36722488 TCACATCTCTTCTC
1 TCACAACTCTTCTC
36722502 TCACAACTCTTCTC
1 TCACAACTCTTCTC
36722516 TC
1 TC
36722518 CTCTCTCAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.43, G:0.00, T:0.40
Consensus pattern (14 bp):
TCACAACTCTTCTC
Found at i:36729681 original size:20 final size:20
Alignment explanation
Indices: 36729636--36729682 Score: 87
Period size: 19 Copynumber: 2.4 Consensus size: 20
36729626 CATCAAAACA
36729636 CCAGAAAAGTAAATCATTTT
1 CCAGAAAAGTAAATCATTTT
36729656 -CAGAAAAGTAAATCATTTT
1 CCAGAAAAGTAAATCATTTT
36729675 CCAGAAAA
1 CCAGAAAA
36729683 CATTTTTCTG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
19 19 0.73
20 7 0.27
ACGTcount: A:0.49, C:0.15, G:0.11, T:0.26
Consensus pattern (20 bp):
CCAGAAAAGTAAATCATTTT
Found at i:36736556 original size:9 final size:9
Alignment explanation
Indices: 36736541--36736583 Score: 61
Period size: 9 Copynumber: 4.7 Consensus size: 9
36736531 CTTCAATGAC
36736541 TAAATTGTAA
1 TAAATTG-AA
36736551 -AAATTGGAA
1 TAAATT-GAA
36736560 TAAATTGAA
1 TAAATTGAA
36736569 TAAATTGAA
1 TAAATTGAA
36736578 TAAATT
1 TAAATT
36736584 TCAAAACCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
9 25 0.81
10 6 0.19
ACGTcount: A:0.53, C:0.00, G:0.12, T:0.35
Consensus pattern (9 bp):
TAAATTGAA
Found at i:36736565 original size:19 final size:18
Alignment explanation
Indices: 36736541--36736583 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 18
36736531 CTTCAATGAC
36736541 TAAATTGTAA-AAATTGGAA
1 TAAATTG-AATAAATT-GAA
36736560 TAAATTGAATAAATTGAA
1 TAAATTGAATAAATTGAA
36736578 TAAATT
1 TAAATT
36736584 TCAAAACCTA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 11 0.48
19 12 0.52
ACGTcount: A:0.53, C:0.00, G:0.12, T:0.35
Consensus pattern (18 bp):
TAAATTGAATAAATTGAA
Found at i:36747148 original size:20 final size:20
Alignment explanation
Indices: 36747097--36747151 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 20
36747087 CCCATCTTCA
* * * *
36747097 CACTTCGATGTCCTTGTTTG
1 CACTTCGATGCCCATGGTCG
* *
36747117 CACCTCGGTGCCCATGGTCG
1 CACTTCGATGCCCATGGTCG
36747137 CACTTCGATGCCCAT
1 CACTTCGATGCCCAT
36747152 ATTACCATTA
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.13, C:0.35, G:0.22, T:0.31
Consensus pattern (20 bp):
CACTTCGATGCCCATGGTCG
Found at i:36757100 original size:20 final size:20
Alignment explanation
Indices: 36757077--36757132 Score: 94
Period size: 20 Copynumber: 2.8 Consensus size: 20
36757067 ATTGTGCAAT
*
36757077 TAGAGGCATCGAAGTGAAAA
1 TAGAGGCACCGAAGTGAAAA
*
36757097 TAGAGACACCGAAGTGAAAA
1 TAGAGGCACCGAAGTGAAAA
36757117 TAGAGGCACCGAAGTG
1 TAGAGGCACCGAAGTG
36757133 TAATCCTATA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.43, C:0.14, G:0.30, T:0.12
Consensus pattern (20 bp):
TAGAGGCACCGAAGTGAAAA
Found at i:36757827 original size:17 final size:17
Alignment explanation
Indices: 36757805--36757840 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
36757795 CAAATTTCCT
36757805 ATCAATTCTAA-CATTTA
1 ATCAATTC-AATCATTTA
36757822 ATCAATTCAATCATTTA
1 ATCAATTCAATCATTTA
36757839 AT
1 AT
36757841 AAAAAACTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 2 0.11
17 16 0.89
ACGTcount: A:0.42, C:0.17, G:0.00, T:0.42
Consensus pattern (17 bp):
ATCAATTCAATCATTTA
Found at i:36763340 original size:47 final size:47
Alignment explanation
Indices: 36763283--36763586 Score: 407
Period size: 47 Copynumber: 6.4 Consensus size: 47
36763273 ATTGATGTAC
* * * *
36763283 AAGTATATATATGTGATAGGGCCGAGTGGCCAATATGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
36763330 AAGTATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATAT--GTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * *
36763379 ACA-TGTGTATGTGTGATAAGGCCAAATGGCCAATGTGATGAATGTGA
1 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
36763426 ACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
36763473 ACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
36763520 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGG
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
36763567 AAGTGTATAAATGTGATAAG
1 AAGTGTATATATGTGATAAG
36763587 TCCCGAAGGG
Statistics
Matches: 236, Mismatches: 17, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
46 1 0.00
47 195 0.83
49 39 0.17
50 1 0.00
ACGTcount: A:0.34, C:0.10, G:0.30, T:0.27
Consensus pattern (47 bp):
AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
Found at i:36763464 original size:22 final size:22
Alignment explanation
Indices: 36763437--36763558 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
36763427 CATGTGTATG
36763437 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
36763459 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
36763484 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
36763506 TGTGATGAATG-TGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
36763531 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
36763553 TGTGAT
1 TGTGAT
36763559 GGATGTGGAA
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 21 0.30
23 17 0.24
24 17 0.24
25 15 0.21
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:36781217 original size:12 final size:12
Alignment explanation
Indices: 36781200--36781224 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
36781190 AAGAGAGAGG
36781200 GTTTGAAAAAGA
1 GTTTGAAAAAGA
36781212 GTTTGAAAAAGA
1 GTTTGAAAAAGA
36781224 G
1 G
36781225 ACAAGTGAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.28, T:0.24
Consensus pattern (12 bp):
GTTTGAAAAAGA
Found at i:36789558 original size:59 final size:58
Alignment explanation
Indices: 36789457--36789587 Score: 187
Period size: 59 Copynumber: 2.3 Consensus size: 58
36789447 GGATAAGGAC
*
36789457 CAAACCTTTCAATATGG--ATATAAAAGCCTAATTTATAAAAGTGTTCAAATGAAGG-
1 CAAACCTTTCAAAATGGTCATATAAAAGCCTAATTTATAAAAGTGTTCAAATGAAGGT
* * *
36789512 CCAACTTTTCAAAATGGTCATATAAAGGCCTAACATTTATAAAAGTGTTCAAATGAAGGT
1 CAAACCTTTCAAAATGGTCATATAAAAGCCT-A-ATTTATAAAAGTGTTCAAATGAAGGT
36789572 CAAACCTTTCAAAATG
1 CAAACCTTTCAAAATG
36789588 AACAAATAAC
Statistics
Matches: 65, Mismatches: 6, Indels: 5
0.86 0.08 0.07
Matches are distributed among these distances:
55 14 0.22
57 11 0.17
58 1 0.02
59 25 0.38
60 14 0.22
ACGTcount: A:0.42, C:0.15, G:0.14, T:0.29
Consensus pattern (58 bp):
CAAACCTTTCAAAATGGTCATATAAAAGCCTAATTTATAAAAGTGTTCAAATGAAGGT
Found at i:36790344 original size:8 final size:8
Alignment explanation
Indices: 36790333--36790359 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
36790323 AATTTCTTAA
36790333 TTTGTTAC
1 TTTGTTAC
36790341 TTTGTTAC
1 TTTGTTAC
36790349 TTTGTTAC
1 TTTGTTAC
36790357 TTT
1 TTT
36790360 TTAGTTTACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.11, C:0.11, G:0.11, T:0.67
Consensus pattern (8 bp):
TTTGTTAC
Found at i:36800684 original size:17 final size:17
Alignment explanation
Indices: 36800662--36800698 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
36800652 GATAAGTACA
*
36800662 CATTGTCATTGCATTTT
1 CATTGTCATTACATTTT
36800679 CATTGTCATTACATTTT
1 CATTGTCATTACATTTT
36800696 CAT
1 CAT
36800699 GTTAGTGCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.22, C:0.19, G:0.08, T:0.51
Consensus pattern (17 bp):
CATTGTCATTACATTTT
Found at i:36802943 original size:24 final size:24
Alignment explanation
Indices: 36802879--36802935 Score: 87
Period size: 24 Copynumber: 2.4 Consensus size: 24
36802869 CAAACCCATT
36802879 TTCACAACTCATGTGAGCATTACA
1 TTCACAACTCATGTGAGCATTACA
* * *
36802903 TTTACAAATCATGTGAGCCTTACA
1 TTCACAACTCATGTGAGCATTACA
36802927 TTCACAACT
1 TTCACAACT
36802936 TGTGTGAGAA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.33, C:0.25, G:0.11, T:0.32
Consensus pattern (24 bp):
TTCACAACTCATGTGAGCATTACA
Found at i:36807023 original size:15 final size:15
Alignment explanation
Indices: 36806980--36807029 Score: 52
Period size: 15 Copynumber: 3.4 Consensus size: 15
36806970 GTTTGGATGT
*
36806980 TATATTTGTGT-ATA
1 TATATATGTGTAATA
36806994 TATA-ATGTACG-AATA
1 TATATATGT--GTAATA
36807009 TATATATGTGTAATA
1 TATATATGTGTAATA
36807024 TATATA
1 TATATA
36807030 AATTCTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 9
0.75 0.03 0.22
Matches are distributed among these distances:
13 3 0.10
14 5 0.17
15 18 0.60
16 4 0.13
ACGTcount: A:0.40, C:0.02, G:0.12, T:0.46
Consensus pattern (15 bp):
TATATATGTGTAATA
Found at i:36807253 original size:76 final size:76
Alignment explanation
Indices: 36807173--36807355 Score: 185
Period size: 78 Copynumber: 2.4 Consensus size: 76
36807163 TATTATATTT
* *
36807173 GAATATGTATGAGTATACATGTATAAGTTCATGTTTTGATTATAAG-TATGTAA-TTATATATGT
1 GAATATGTATGAGTATACATGTATAAGTTCATGTATTGA-AATAAGATATG-AATTTATATATGT
36807236 ATATG-GTAGACTC
64 ATATGTG-AGACTC
* * * * * *
36807249 GAATATATATATAAATATACATGTATAAATTCTTGTATTGAAATTAGATATGAATTTATATATGT
1 G-A-ATATGTATGAGTATACATGTATAAGTTCATGTATTGAAATAAGATATGAATTTATATATGT
**
36807314 ATATGTGAGGTTC
64 ATATGTGAGACTC
*
36807327 GAATGTGTATG-GTTATACATGTATAAGTT
1 GAATATGTATGAG-TATACATGTATAAGTT
36807356 TTATATTGAA
Statistics
Matches: 86, Mismatches: 15, Indels: 12
0.76 0.13 0.11
Matches are distributed among these distances:
76 22 0.26
77 8 0.09
78 55 0.64
79 1 0.01
ACGTcount: A:0.36, C:0.04, G:0.17, T:0.42
Consensus pattern (76 bp):
GAATATGTATGAGTATACATGTATAAGTTCATGTATTGAAATAAGATATGAATTTATATATGTAT
ATGTGAGACTC
Found at i:36810100 original size:47 final size:47
Alignment explanation
Indices: 36810048--36810696 Score: 947
Period size: 47 Copynumber: 13.6 Consensus size: 47
36810038 GATAATTGTG
*
36810048 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
36810095 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36810142 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36810191 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
36810240 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
36810287 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
36810334 ATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
36810383 ATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36810432 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36810481 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
36810530 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
36810577 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * * *
36810624 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
36810671 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTATATATATGTGATAAG
36810697 TCCCGAAGGG
Statistics
Matches: 568, Mismatches: 30, Indels: 8
0.94 0.05 0.01
Matches are distributed among these distances:
47 284 0.50
49 284 0.50
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:36810108 original size:49 final size:49
Alignment explanation
Indices: 36810048--36810696 Score: 1024
Period size: 49 Copynumber: 13.6 Consensus size: 49
36810038 GATAATTGTG
36810048 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
36810095 ATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36810142 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36810191 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
36810240 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
36810287 ATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
36810334 ATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
36810383 ATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36810432 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36810481 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
36810530 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
36810577 ATGTGAAAGTG--TATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
36810624 ATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36810671 ATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
36810697 TCCCGAAGGG
Statistics
Matches: 571, Mismatches: 23, Indels: 16
0.94 0.04 0.03
Matches are distributed among these distances:
47 278 0.49
48 3 0.01
49 290 0.51
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (49 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:36810530 original size:290 final size:290
Alignment explanation
Indices: 36810048--36810696 Score: 1152
Period size: 290 Copynumber: 2.3 Consensus size: 290
36810038 GATAATTGTG
* *
36810048 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
36810109 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
66 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
36810174 AATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
131 AATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
36810239 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
196 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
36810304 TGTGATAAGGCCGAATGGCCAATGTGATGA
261 TGTGATAAGGCCGAATGGCCAATGTGATGA
36810334 ATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
36810399 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
66 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
36810464 AATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
131 AATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
36810529 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
196 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
* * *
36810594 TGTGATGAGGCCTAATGGCCGATGTGATGA
261 TGTGATAAGGCCGAATGGCCAATGTGATGA
* * * * *
36810624 ATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-
1 ATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
36810686 A-ATGTGATAAG
66 ATATGTGATAAG
36810697 TCCCGAAGGG
Statistics
Matches: 349, Mismatches: 10, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
286 15 0.04
287 3 0.01
288 95 0.27
290 236 0.68
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (290 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
AATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCGAATGGCCAATGTGATGA
Found at i:36812469 original size:41 final size:41
Alignment explanation
Indices: 36812412--36812656 Score: 330
Period size: 41 Copynumber: 6.0 Consensus size: 41
36812402 ATTGAGGTTT
* **
36812412 TCAGGCT-TAACGCCTAGTAGGCTAAGTGTTGGTGATCTGAA
1 TCAGGCTATAA-GCCTAGCAGGCTAAGTGCCGGTGATCTGAA
*
36812453 TCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGTGAACTGAA
1 TCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGTGATCTGAA
* *
36812494 TCAGGTTATAAGCCTAGCAGGCCAAGTGCCGGTGATCTGAA
1 TCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGTGATCTGAA
* ** * *
36812535 TCAGGCTATAAGCCTAGCATGCTAAGTTTCGGTGAACTAAA
1 TCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGTGATCTGAA
* * *
36812576 TCAGGTTATAAGCCTAGCAGGCTAAATGCCGGTAATCTGAA
1 TCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGTGATCTGAA
*
36812617 TCAGGTTATAAGCCTAGCAGGCTAAGTGCCGGTGAATCTG
1 TCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGTG-ATCTG
36812657 TTTAAATTAA
Statistics
Matches: 178, Mismatches: 24, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
41 170 0.96
42 8 0.04
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.24
Consensus pattern (41 bp):
TCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGTGATCTGAA
Found at i:36812631 original size:123 final size:124
Alignment explanation
Indices: 36812412--36812656 Score: 372
Period size: 123 Copynumber: 2.0 Consensus size: 124
36812402 ATTGAGGTTT
* * *
36812412 TCAGGCTTAACGCCTAGTAGGCTAAGTGTTGGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTA
1 TCAGGCTTAACGCCTAGCAGGCTAAGTGTTGGTGAACTAAATCAGGCTATAAGCCTAGCAGGCTA
*
36812477 AGTGCCGGTGAACTGAATCAGGTTATAAGCCTAGCAGGCCAAGTGCCGGTG-ATCTGAA
66 AATGCCGGTGAACTGAATCAGGTTATAAGCCTAGCAGGCCAAGTGCCGGTGAATCTGAA
* *
36812535 TCAGGCTATAA-GCCTAGCATGCTAAGT-TTCGGTGAACTAAATCAGGTTATAAGCCTAGCAGGC
1 TCAGGCT-TAACGCCTAGCAGGCTAAGTGTT-GGTGAACTAAATCAGGCTATAAGCCTAGCAGGC
*
36812598 TAAATGCCGGT-AATCTGAATCAGGTTATAAGCCTAGCAGGCTAAGTGCCGGTGAATCTG
64 TAAATGCCGGTGAA-CTGAATCAGGTTATAAGCCTAGCAGGCCAAGTGCCGGTGAATCTG
36812657 TTTAAATTAA
Statistics
Matches: 111, Mismatches: 7, Indels: 7
0.89 0.06 0.06
Matches are distributed among these distances:
122 4 0.04
123 99 0.89
124 8 0.07
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.24
Consensus pattern (124 bp):
TCAGGCTTAACGCCTAGCAGGCTAAGTGTTGGTGAACTAAATCAGGCTATAAGCCTAGCAGGCTA
AATGCCGGTGAACTGAATCAGGTTATAAGCCTAGCAGGCCAAGTGCCGGTGAATCTGAA
Found at i:36820835 original size:21 final size:21
Alignment explanation
Indices: 36820811--36820852 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
36820801 GTGACTTGGA
36820811 ATGATACACATGTCCAACATT
1 ATGATACACATGTCCAACATT
36820832 ATGATACACATGTCCAACATT
1 ATGATACACATGTCCAACATT
36820853 CTCAAGACCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.24, G:0.10, T:0.29
Consensus pattern (21 bp):
ATGATACACATGTCCAACATT
Found at i:36836215 original size:20 final size:19
Alignment explanation
Indices: 36836192--36836265 Score: 76
Period size: 20 Copynumber: 3.8 Consensus size: 19
36836182 TTGTGCAATT
*
36836192 AGAGGCATCGAAGTGAAAAC
1 AGAGGCACCGAAGTG-AAAC
* * *
36836212 AGAGACACCGAAGAGTAAC
1 AGAGGCACCGAAGTGAAAC
* *
36836231 AGAGGCACCAAAGTGCAAAT
1 AGAGGCACCGAAGTG-AAAC
36836251 AGAGGCACCGAAGTG
1 AGAGGCACCGAAGTG
36836266 TAATCCTATA
Statistics
Matches: 43, Mismatches: 10, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
19 15 0.35
20 28 0.65
ACGTcount: A:0.43, C:0.19, G:0.30, T:0.08
Consensus pattern (19 bp):
AGAGGCACCGAAGTGAAAC
Found at i:36836237 original size:39 final size:39
Alignment explanation
Indices: 36836192--36836268 Score: 100
Period size: 39 Copynumber: 2.0 Consensus size: 39
36836182 TTGTGCAATT
* *
36836192 AGAGGCATCGAAGTGAAAACAGAGACACCGAAGAGTAAC
1 AGAGGCACCAAAGTGAAAACAGAGACACCGAAGAGTAAC
* * * *
36836231 AGAGGCACCAAAGTGCAAATAGAGGCACCGAAGTGTAA
1 AGAGGCACCAAAGTGAAAACAGAGACACCGAAGAGTAA
36836269 TCCTATACAA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
39 32 1.00
ACGTcount: A:0.44, C:0.18, G:0.29, T:0.09
Consensus pattern (39 bp):
AGAGGCACCAAAGTGAAAACAGAGACACCGAAGAGTAAC
Found at i:36836961 original size:17 final size:17
Alignment explanation
Indices: 36836939--36836974 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
36836929 CAAATTTCCT
36836939 ATCAATTCTAA-CATTTA
1 ATCAATTC-AATCATTTA
36836956 ATCAATTCAATCATTTA
1 ATCAATTCAATCATTTA
36836973 AT
1 AT
36836975 AAAAAACTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 2 0.11
17 16 0.89
ACGTcount: A:0.42, C:0.17, G:0.00, T:0.42
Consensus pattern (17 bp):
ATCAATTCAATCATTTA
Found at i:36849986 original size:12 final size:12
Alignment explanation
Indices: 36849969--36849993 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
36849959 AAAAGAGAGG
36849969 GTTTGAAAAAGA
1 GTTTGAAAAAGA
36849981 GTTTGAAAAAGA
1 GTTTGAAAAAGA
36849993 G
1 G
36849994 ACAAGTGAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.28, T:0.24
Consensus pattern (12 bp):
GTTTGAAAAAGA
Found at i:36858527 original size:59 final size:60
Alignment explanation
Indices: 36858445--36858588 Score: 218
Period size: 59 Copynumber: 2.4 Consensus size: 60
36858435 GGATAAGGAC
*
36858445 CAAACCTTTCAATATGGACATATAAAAGCCTAACATTTATAAAAGTGTTCAAATGAAGG-
1 CAAACCTTTCAAAATGGACATATAAAAGCCTAACATTTATAAAAGTGTTCAAATGAAGGT
* * * *
36858504 CCAACTTTTCAAAATGGTCATATAAAGGCCTAACATTTATAAAAGTGTTCAAATGAAGGT
1 CAAACCTTTCAAAATGGACATATAAAAGCCTAACATTTATAAAAGTGTTCAAATGAAGGT
* *
36858564 CAAACCTTTCAAAATGAACAAATAA
1 CAAACCTTTCAAAATGGACATATAA
36858589 CGGTTTATCC
Statistics
Matches: 74, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
59 54 0.73
60 20 0.27
ACGTcount: A:0.44, C:0.16, G:0.12, T:0.27
Consensus pattern (60 bp):
CAAACCTTTCAAAATGGACATATAAAAGCCTAACATTTATAAAAGTGTTCAAATGAAGGT
Found at i:36858532 original size:28 final size:30
Alignment explanation
Indices: 36858451--36858541 Score: 89
Period size: 28 Copynumber: 3.1 Consensus size: 30
36858441 GGACCAAACC
* * *
36858451 TTTCAATATGGACATATAAAAGCCTAACAT
1 TTTCAAAATGGTCATATAAAGGCCTAACAT
* * *
36858481 TTAT-AAAAGTGTTCAAATGAAGGCC-AAC-T
1 TT-TCAAAA-TGGTCATATAAAGGCCTAACAT
36858510 TTTCAAAATGGTCATATAAAGGCCTAACAT
1 TTTCAAAATGGTCATATAAAGGCCTAACAT
36858540 TT
1 TT
36858542 ATAAAAGTGT
Statistics
Matches: 47, Mismatches: 9, Indels: 10
0.71 0.14 0.15
Matches are distributed among these distances:
28 14 0.30
29 10 0.21
30 11 0.23
31 12 0.26
ACGTcount: A:0.41, C:0.15, G:0.13, T:0.31
Consensus pattern (30 bp):
TTTCAAAATGGTCATATAAAGGCCTAACAT
Found at i:36859330 original size:8 final size:8
Alignment explanation
Indices: 36859319--36859345 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
36859309 AATTCTTTAA
36859319 TTTGTTAC
1 TTTGTTAC
36859327 TTTGTTAC
1 TTTGTTAC
36859335 TTTGTTAC
1 TTTGTTAC
36859343 TTT
1 TTT
36859346 TTATTTTACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.11, C:0.11, G:0.11, T:0.67
Consensus pattern (8 bp):
TTTGTTAC
Found at i:36861283 original size:28 final size:28
Alignment explanation
Indices: 36861211--36861275 Score: 130
Period size: 28 Copynumber: 2.3 Consensus size: 28
36861201 GTTATCTTAT
36861211 GAAAGTGTCATTGCAGTCACTGACACTA
1 GAAAGTGTCATTGCAGTCACTGACACTA
36861239 GAAAGTGTCATTGCAGTCACTGACACTA
1 GAAAGTGTCATTGCAGTCACTGACACTA
36861267 GAAAGTGTC
1 GAAAGTGTC
36861276 GTGACAGTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (28 bp):
GAAAGTGTCATTGCAGTCACTGACACTA
Found at i:36869664 original size:17 final size:17
Alignment explanation
Indices: 36869639--36869675 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
36869629 GATAAGTACA
*
36869639 CATTATCATTGCATTTT
1 CATTATCATTACATTTT
*
36869656 CATTGTCATTACATTTT
1 CATTATCATTACATTTT
36869673 CAT
1 CAT
36869676 GTTAGTGCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.24, C:0.19, G:0.05, T:0.51
Consensus pattern (17 bp):
CATTATCATTACATTTT
Found at i:36871930 original size:24 final size:24
Alignment explanation
Indices: 36871866--36871922 Score: 87
Period size: 24 Copynumber: 2.4 Consensus size: 24
36871856 CAAACCCATT
36871866 TTCACAACTCATGTGAGCATTACA
1 TTCACAACTCATGTGAGCATTACA
* * *
36871890 TTTACAAATCATGTGAGCCTTACA
1 TTCACAACTCATGTGAGCATTACA
36871914 TTCACAACT
1 TTCACAACT
36871923 TGTGTGAGAA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.33, C:0.25, G:0.11, T:0.32
Consensus pattern (24 bp):
TTCACAACTCATGTGAGCATTACA
Found at i:36876849 original size:41 final size:41
Alignment explanation
Indices: 36876792--36877036 Score: 330
Period size: 41 Copynumber: 6.0 Consensus size: 41
36876782 ATTGAGGTTT
* **
36876792 TCAGGCT-TAACGCCTAGTAGGCTAAGTGTTGGTGATCTGAA
1 TCAGGCTATAA-GCCTAGCAGGCTAAGTGCCGGTGATCTGAA
*
36876833 TCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGTGAACTGAA
1 TCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGTGATCTGAA
* * *
36876874 TCAGGTTATAAGCCTAGCAGGCTAAGTGCCAGTGGTCTGAA
1 TCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGTGATCTGAA
* * ** * *
36876915 TTAGGCTATAAGCCTAGCATGCTAAGTTTCGGTGAACTAAA
1 TCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGTGATCTGAA
*
36876956 TCAGGTTATAAGCCTAGCAGGCTAAGTGCCGGTGATCTGAA
1 TCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGTGATCTGAA
*
36876997 TCAGGTTATAAGCCTAGCAGGCTAAGTGCCGGTGAATCTG
1 TCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGTG-ATCTG
36877037 TTTAAATTAA
Statistics
Matches: 178, Mismatches: 24, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
41 170 0.96
42 8 0.04
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.25
Consensus pattern (41 bp):
TCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGTGATCTGAA
Found at i:36877013 original size:123 final size:123
Alignment explanation
Indices: 36876794--36877026 Score: 380
Period size: 123 Copynumber: 1.9 Consensus size: 123
36876784 TGAGGTTTTC
* * *
36876794 AGGCTTAACGCCTAGTAGGCTAAGTGTTGGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAG
1 AGGCTTAACGCCTAGCAGGCTAAGTGTTGGTGAACTAAATCAGGCTATAAGCCTAGCAGGCTAAG
36876859 TGCCGGTGAACTGAATCAGGTTATAAGCCTAGCAGGCTAAGTGCCAGTGGTCTGAATT
66 TGCCGGTGAACTGAATCAGGTTATAAGCCTAGCAGGCTAAGTGCCAGTGGTCTGAATT
* *
36876917 AGGCTATAA-GCCTAGCATGCTAAGT-TTCGGTGAACTAAATCAGGTTATAAGCCTAGCAGGCTA
1 AGGCT-TAACGCCTAGCAGGCTAAGTGTT-GGTGAACTAAATCAGGCTATAAGCCTAGCAGGCTA
*
36876980 AGTGCCGGTGATCTGAATCAGGTTATAAGCCTAGCAGGCTAAGTGCC
64 AGTGCCGGTGAACTGAATCAGGTTATAAGCCTAGCAGGCTAAGTGCC
36877027 GGTGAATCTG
Statistics
Matches: 102, Mismatches: 6, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
122 2 0.02
123 97 0.95
124 3 0.03
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (123 bp):
AGGCTTAACGCCTAGCAGGCTAAGTGTTGGTGAACTAAATCAGGCTATAAGCCTAGCAGGCTAAG
TGCCGGTGAACTGAATCAGGTTATAAGCCTAGCAGGCTAAGTGCCAGTGGTCTGAATT
Found at i:36881752 original size:27 final size:26
Alignment explanation
Indices: 36881706--36881796 Score: 114
Period size: 25 Copynumber: 3.5 Consensus size: 26
36881696 GTGAGCAGCA
** *
36881706 TCGTGTGAGCAGGCCCATTTTCACAAC
1 TCGTGTGAGCATACCGA-TTTCACAAC
*
36881733 TCGTGTGAGCATACCGATTT-ACAGC
1 TCGTGTGAGCATACCGATTTCACAAC
*
36881758 TTGTGTGAGCATACCGA-TTCACAAC
1 TCGTGTGAGCATACCGATTTCACAAC
36881783 TCGTGTGAGCATAC
1 TCGTGTGAGCATAC
36881797 ATGTACAAGA
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
24 2 0.04
25 37 0.66
26 3 0.05
27 14 0.25
ACGTcount: A:0.24, C:0.25, G:0.23, T:0.27
Consensus pattern (26 bp):
TCGTGTGAGCATACCGATTTCACAAC
Found at i:36881769 original size:25 final size:25
Alignment explanation
Indices: 36881725--36881796 Score: 117
Period size: 25 Copynumber: 2.9 Consensus size: 25
36881715 CAGGCCCATT
36881725 TTCACAACTCGTGTGAGCATACCGA
1 TTCACAACTCGTGTGAGCATACCGA
* * *
36881750 TTTACAGCTTGTGTGAGCATACCGA
1 TTCACAACTCGTGTGAGCATACCGA
36881775 TTCACAACTCGTGTGAGCATAC
1 TTCACAACTCGTGTGAGCATAC
36881797 ATGTACAAGA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (25 bp):
TTCACAACTCGTGTGAGCATACCGA
Found at i:36884414 original size:50 final size:48
Alignment explanation
Indices: 36884324--36884420 Score: 122
Period size: 50 Copynumber: 2.0 Consensus size: 48
36884314 ATACATCATG
* *
36884324 TGCATATAACCGATCATATATATATACTAAATAAACATTATAACCGAA
1 TGCATATAACCGAACATATATATATACTAAACAAACATTATAACCGAA
* * * *
36884372 TGCATATAATCGAACATGTATATATATACTAAACACATATTATATCCGA
1 TGCATATAACCGAACA--TATATATATACTAAACAAACATTATAACCGA
36884421 TTGTATACAT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
48 14 0.34
50 27 0.66
ACGTcount: A:0.45, C:0.16, G:0.07, T:0.31
Consensus pattern (48 bp):
TGCATATAACCGAACATATATATATACTAAACAAACATTATAACCGAA
Found at i:36884656 original size:34 final size:32
Alignment explanation
Indices: 36884594--36884687 Score: 107
Period size: 34 Copynumber: 2.9 Consensus size: 32
36884584 AACTGCTTAG
*
36884594 CAAATGCATATACCTAATGCATATATATTTAA
1 CAAATGCATATACCGAATGCATATATATTTAA
* *
36884626 TAGATGCATATACCGAATGCACATATATATTTAA
1 CAAATGCATATACCGAATG--CATATATATTTAA
* * **
36884660 CAAATGCTTAGACCGAATATATATATAT
1 CAAATGCATATACCGAATGCATATATAT
36884688 GCTCATCAAT
Statistics
Matches: 51, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
32 24 0.47
34 27 0.53
ACGTcount: A:0.43, C:0.15, G:0.10, T:0.33
Consensus pattern (32 bp):
CAAATGCATATACCGAATGCATATATATTTAA
Found at i:36885462 original size:76 final size:78
Alignment explanation
Indices: 36885323--36885490 Score: 200
Period size: 76 Copynumber: 2.2 Consensus size: 78
36885313 AGCTAACAAT
* * * *
36885323 TTCATACCTTTAATTCAATACAAGAACTTATATTTGTATATAAATACATATTCGAACTTACATAT
1 TTCATACCTTTAAATCAATACAAGAACTTATATATGTATATAAATACATATTCCAACTCACATAT
36885388 AC-ATACATAACA
66 ACAATACATAACA
* * * *
36885400 TTCATACCTTTAAAT-ATATTCAAG-ACTTAT-TCATGTATATACATATATGTTCCAACTCACAT
1 TTCATACCTTTAAATCA-ATACAAGAACTTATAT-ATGTATATAAATACATATTCCAACTCACAT
*
36885462 ATACATATATATAACA
64 ATACA-ATACATAACA
36885478 TTCATACCTTTAA
1 TTCATACCTTTAA
36885491 CCAAATCCAA
Statistics
Matches: 78, Mismatches: 9, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
75 1 0.01
76 35 0.45
77 20 0.26
78 22 0.28
ACGTcount: A:0.40, C:0.18, G:0.04, T:0.38
Consensus pattern (78 bp):
TTCATACCTTTAAATCAATACAAGAACTTATATATGTATATAAATACATATTCCAACTCACATAT
ACAATACATAACA
Found at i:36885627 original size:25 final size:25
Alignment explanation
Indices: 36885593--36885649 Score: 105
Period size: 25 Copynumber: 2.3 Consensus size: 25
36885583 GAATTTATAC
36885593 ATATATATATTCAAACATGATACAT
1 ATATATATATTCAAACATGATACAT
*
36885618 ATATATATATTCGAACATGATACAT
1 ATATATATATTCAAACATGATACAT
36885643 ATATATA
1 ATATATA
36885650 CATATCATTC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.47, C:0.11, G:0.05, T:0.37
Consensus pattern (25 bp):
ATATATATATTCAAACATGATACAT
Found at i:36890144 original size:60 final size:60
Alignment explanation
Indices: 36890073--36890193 Score: 242
Period size: 60 Copynumber: 2.0 Consensus size: 60
36890063 AATGAGTCCA
36890073 TCAATATATTTATTTCTCTTATTATTTATTTATTTATTTTTAAATAAATTTAAAAATATC
1 TCAATATATTTATTTCTCTTATTATTTATTTATTTATTTTTAAATAAATTTAAAAATATC
36890133 TCAATATATTTATTTCTCTTATTATTTATTTATTTATTTTTAAATAAATTTAAAAATATC
1 TCAATATATTTATTTCTCTTATTATTTATTTATTTATTTTTAAATAAATTTAAAAATATC
36890193 T
1 T
36890194 TAAAATCGAG
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 61 1.00
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.57
Consensus pattern (60 bp):
TCAATATATTTATTTCTCTTATTATTTATTTATTTATTTTTAAATAAATTTAAAAATATC
Found at i:36890222 original size:15 final size:15
Alignment explanation
Indices: 36890202--36890233 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
36890192 CTTAAAATCG
36890202 AGCAAAAATATTCCT
1 AGCAAAAATATTCCT
36890217 AGCAAAAATATTCCT
1 AGCAAAAATATTCCT
36890232 AG
1 AG
36890234 TATTTTAATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.47, C:0.19, G:0.09, T:0.25
Consensus pattern (15 bp):
AGCAAAAATATTCCT
Found at i:36894730 original size:14 final size:14
Alignment explanation
Indices: 36894711--36894750 Score: 55
Period size: 13 Copynumber: 2.9 Consensus size: 14
36894701 AGTTTGTAGA
36894711 AAATAAACAAAAAT
1 AAATAAACAAAAAT
*
36894725 AAATAAA-TAAAAT
1 AAATAAACAAAAAT
*
36894738 AAAAAAACAAAAA
1 AAATAAACAAAAA
36894751 CAAAAACGTA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
13 11 0.50
14 11 0.50
ACGTcount: A:0.82, C:0.05, G:0.00, T:0.12
Consensus pattern (14 bp):
AAATAAACAAAAAT
Found at i:36894755 original size:14 final size:14
Alignment explanation
Indices: 36894710--36894756 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
36894700 AAGTTTGTAG
36894710 AAAATAAACAAAAAT
1 AAAA-AAACAAAAAT
* *
36894725 AAATAAA-TAAAAT
1 AAAAAAACAAAAAT
*
36894738 AAAAAAACAAAAAC
1 AAAAAAACAAAAAT
36894752 AAAAA
1 AAAAA
36894757 CGTAAAACAG
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
13 11 0.42
14 12 0.46
15 3 0.12
ACGTcount: A:0.83, C:0.06, G:0.00, T:0.11
Consensus pattern (14 bp):
AAAAAAACAAAAAT
Found at i:36895320 original size:13 final size:14
Alignment explanation
Indices: 36895294--36895322 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
36895284 GAACATTTTA
36895294 TTTTTTTTATATAT
1 TTTTTTTTATATAT
36895308 TTTTTTTTA-ATAT
1 TTTTTTTTATATAT
36895321 TT
1 TT
36895323 GGGCTTGGGC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (14 bp):
TTTTTTTTATATAT
Found at i:36895671 original size:44 final size:44
Alignment explanation
Indices: 36895549--36895671 Score: 131
Period size: 44 Copynumber: 2.8 Consensus size: 44
36895539 GGATTATCGA
* * *
36895549 CTTCAATCTGCTCCACTGCAACCCCAGGGAGATAAGATTTGCTT
1 CTTCAGTCTGCTCCACTGCAACCTCAGGGAGATAAGACTTGCTT
* * * * * *
36895593 CTTCGGTCTACCCCACTGCAACTTTAGGGGGATAAGACTTG-TT
1 CTTCAGTCTGCTCCACTGCAACCTCAGGGAGATAAGACTTGCTT
* *
36895636 TTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAA
1 CT-TCAGTCTGCTCCACTGCAACCTCAGGGAGATAA
36895672 AACCTAATGC
Statistics
Matches: 61, Mismatches: 17, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
43 3 0.05
44 58 0.95
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (44 bp):
CTTCAGTCTGCTCCACTGCAACCTCAGGGAGATAAGACTTGCTT
Found at i:36895747 original size:44 final size:44
Alignment explanation
Indices: 36895692--36896338 Score: 277
Period size: 44 Copynumber: 14.0 Consensus size: 44
36895682 GATCCACTCT
* * *
36895692 ACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATCTGCTCC
1 ACTGTAACTTCAGAGAGATAAGATCTATTGCTTCAATCTGCTCC
* * *
36895736 ACTGTAACTTCA-AGGAGATAGGA--TAGTGTCTTCGATCTGCTCC
1 ACTGTAACTTCAGA-GAGATAAGATCTATTG-CTTCAATCTGCTCC
* * *
36895779 GCTGTAA-TCTCA-AGGAGATAAGATCTCTAT-CTTCAATCGGATGCGATCT
1 ACTGTAACT-TCAGA-GAGATAAGATCTAT-TGCTTCAATC---TGC--TCC
* * * *
36895828 ATTCT-ACTTCAGAGAGATAAGATCCT-TTGTTTTAAT-TCGCTCC
1 ACTGTAACTTCAGAGAGATAAGAT-CTATTGCTTCAATCT-GCTCC
* * * *
36895871 ACTGTAACTTTAGGGAGATAGGAT-TATCGGCTTCAATCTGCTCC
1 ACTGTAACTTCAGAGAGATAAGATCTAT-TGCTTCAATCTGCTCC
* * * *
36895915 ACTATAACTTCAGAGAGATAAGATTTCTGGCTTCAATCGGATGCGATCTACTC
1 ACTGTAACTTCAGAGAGATAAGATCTATTGCTTCAATC---T--G--CT-C-C
* * *
36895968 TACTGTAACTTCAGAGAGATAAGATCCT-TTGTTTTAATCCGCTCC
1 -ACTGTAACTTCAGAGAGATAAGAT-CTATTGCTTCAATCTGCTCC
* *
36896013 ACTGTAACTTCA-AGGAGATAGGAT-TATCGACTTCAATCTGCTCC
1 ACTGTAACTTCAGA-GAGATAAGATCTATTG-CTTCAATCTGCTCC
* * * * *
36896057 ACTGTAACTTCA-AGGAGATAAGATTTCTGGCTTCACTTGGATGCGATCTAC
1 ACTGTAACTTCAGA-GAGATAAGATCTATTGCTTCA-AT--CTGC--TC--C
* * *
36896108 TTTACTGTAACTTCAGAAAGATAAGATCCT-TTGTTTTAATCTGCTCC
1 ---ACTGTAACTTCAGAGAGATAAGAT-CTATTGCTTCAATCTGCTCC
* *
36896155 ACTGTAACTTCAGGGAGATAGGAT-TATTGGCTTCAATCTGCTCC
1 ACTGTAACTTCAGAGAGATAAGATCTATT-GCTTCAATCTGCTCC
* * * * * *
36896199 ACTGTAACTTCAGGGAGATAAGATTTCTGGCTTTACTCGGATGCGATCTACTCT
1 ACTGTAACTTCAGAGAGATAAGA--TCT---ATTGCT----T-CAATCTGCTCC
* * *
36896253 ACTGTAACTTCAGAGAGATAAGATCCT-TTGTTTTAATCCGCTCC
1 ACTGTAACTTCAGAGAGATAAGAT-CTATTGCTTCAATCTGCTCC
* * *
36896297 ACTGTAACTTCAGGGAGATAGGAT-TATCAGCTTCAATCTGCT
1 ACTGTAACTTCAGAGAGATAAGATCTAT-TGCTTCAATCTGCT
36896339 TCCTTACACT
Statistics
Matches: 460, Mismatches: 79, Indels: 128
0.69 0.12 0.19
Matches are distributed among these distances:
42 8 0.02
43 44 0.10
44 237 0.52
45 12 0.03
46 3 0.01
47 12 0.03
48 20 0.04
49 19 0.04
50 2 0.00
51 6 0.01
52 2 0.00
53 5 0.01
54 87 0.19
55 3 0.01
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (44 bp):
ACTGTAACTTCAGAGAGATAAGATCTATTGCTTCAATCTGCTCC
Found at i:36896020 original size:142 final size:142
Alignment explanation
Indices: 36895678--36896338 Score: 966
Period size: 142 Copynumber: 4.7 Consensus size: 142
36895668 ATAAAACCTA
* * ** *
36895678 ATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGAT-CTATTACTTTAATCTGCTCCACTGTA
1 ATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCT-TTGTTTTAATCCGCTCCACTGTA
* * * * *
36895742 ACTTCAAGGAGATAGGA-TAGT-GTCTTCGATCTGCTCCGCTGTAA-TCTCAAGGAGATAAGATC
65 ACTTCAGGGAGATAGGATTA-TCGGCTTCAATCTGCTCCACTGTAACT-TCAAGGAGATAAGATT
**
36895804 TCTATCTTCAATCGG
128 TCTGGCTTCAATCGG
*
36895819 ATGCGATCTA-T-T-C--T-ACTTCAGAGAGATAAGATCCTTTGTTTTAATTCGCTCCACTGTAA
1 ATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTGTTTTAATCCGCTCCACTGTAA
* *
36895878 CTTTAGGGAGATAGGATTATCGGCTTCAATCTGCTCCACTATAACTTC-AGAGAGATAAGATTTC
66 CTTCAGGGAGATAGGATTATCGGCTTCAATCTGCTCCACTGTAACTTCAAG-GAGATAAGATTTC
36895942 TGGCTTCAATCGG
130 TGGCTTCAATCGG
36895955 ATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTGTTTTAATCCGCTCCACTGTAA
1 ATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTGTTTTAATCCGCTCCACTGTAA
* *
36896020 CTTCAAGGAGATAGGATTATCGACTTCAATCTGCTCCACTGTAACTTCAAGGAGATAAGATTTCT
66 CTTCAGGGAGATAGGATTATCGGCTTCAATCTGCTCCACTGTAACTTCAAGGAGATAAGATTTCT
* *
36896085 GGCTTCACTTGG
131 GGCTTCAATCGG
* * *
36896097 ATGCGATCTACTTTACTGTAACTTCAGAAAGATAAGATCCTTTGTTTTAATCTGCTCCACTGTAA
1 ATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTGTTTTAATCCGCTCCACTGTAA
* *
36896162 CTTCAGGGAGATAGGATTATTGGCTTCAATCTGCTCCACTGTAACTTCAGGGAGATAAGATTTCT
66 CTTCAGGGAGATAGGATTATCGGCTTCAATCTGCTCCACTGTAACTTCAAGGAGATAAGATTTCT
* *
36896227 GGCTTTACTCGG
131 GGCTTCAATCGG
36896239 ATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTGTTTTAATCCGCTCCACTGTAA
1 ATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTGTTTTAATCCGCTCCACTGTAA
*
36896304 CTTCAGGGAGATAGGATTATCAGCTTCAATCTGCT
66 CTTCAGGGAGATAGGATTATCGGCTTCAATCTGCT
36896339 TCCTTACACT
Statistics
Matches: 472, Mismatches: 36, Indels: 23
0.89 0.07 0.04
Matches are distributed among these distances:
135 55 0.12
136 58 0.12
137 2 0.00
138 2 0.00
139 2 0.00
140 1 0.00
141 10 0.02
142 340 0.72
143 2 0.00
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (142 bp):
ATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTGTTTTAATCCGCTCCACTGTAA
CTTCAGGGAGATAGGATTATCGGCTTCAATCTGCTCCACTGTAACTTCAAGGAGATAAGATTTCT
GGCTTCAATCGG
Found at i:36896047 original size:98 final size:97
Alignment explanation
Indices: 36895905--36896334 Score: 246
Period size: 98 Copynumber: 4.5 Consensus size: 97
36895895 TATCGGCTTC
* * *
36895905 AATCTGCTCCACTATAACTTC-AGAGAGATAAGATT-TCTGGCTTCAATCGGATGCGATCTACTC
1 AATCCGCTCCACTGTAACTTCAAG-GAGATAAGATTATC-GACTTCAATC-GATGCGATCTACTC
36895968 TACTGTAACTTCAGAGAGATAAGATCCTTTGTTTT
63 TACTGTAACTTCAGAGAGATAAGATCCTTTGTTTT
*
36896003 AATCCGCTCCACTGTAACTTCAAGGAGATAGGATTATCGACTTCAATC--T--G--CT-C-C-AC
1 AATCCGCTCCACTGTAACTTCAAGGAGATAAGATTATCGACTTCAATCGATGCGATCTACTCTAC
36896059 TGTAACTTCA-AGGAGATAAGAT--TTCTGGCTTCACTT
66 TGTAACTTCAGA-GAGATAAGATCCTT-T-G-TT---TT
* * * * * ***
36896095 GGATGCGATCTACTTTACTGTAACTTC-AGAAAGATAAG---ATC--CTT---T-GTTTTAATCT
1 -AATCCG--CT-C--CACTGTAACTTCAAG-GAGATAAGATTATCGACTTCAATCGATGCGATCT
* * * * ** * * *
36896150 GCTCCACTGTAACTTCAGGGAGATAGGATTATTGGCTTC
59 ACTCTACTGTAACTTCAGAGAGATAAGATCCTTTGTTTT
* * * * *
36896189 AATCTGCTCCACTGTAACTTCAGGGAGATAAGATT-TCTGGCTTTACTCGGATGCGATCTACTCT
1 AATCCGCTCCACTGTAACTTCAAGGAGATAAGATTATC-GACTTCAATC-GATGCGATCTACTCT
36896253 ACTGTAACTTCAGAGAGATAAGATCCTTTGTTTT
64 ACTGTAACTTCAGAGAGATAAGATCCTTTGTTTT
* *
36896287 AATCCGCTCCACTGTAACTTCAGGGAGATAGGATTATC-AGCTTCAATC
1 AATCCGCTCCACTGTAACTTCAAGGAGATAAGATTATCGA-CTTCAATC
36896335 TGCTTCCTTA
Statistics
Matches: 251, Mismatches: 39, Indels: 84
0.67 0.10 0.22
Matches are distributed among these distances:
86 2 0.01
87 2 0.01
88 41 0.16
89 4 0.02
90 5 0.02
91 5 0.02
92 2 0.01
93 14 0.06
94 1 0.00
95 8 0.03
96 3 0.01
97 4 0.02
98 152 0.61
99 6 0.02
100 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (97 bp):
AATCCGCTCCACTGTAACTTCAAGGAGATAAGATTATCGACTTCAATCGATGCGATCTACTCTAC
TGTAACTTCAGAGAGATAAGATCCTTTGTTTT
Found at i:36896645 original size:43 final size:43
Alignment explanation
Indices: 36896453--36896664 Score: 169
Period size: 43 Copynumber: 4.9 Consensus size: 43
36896443 AGGACTTGTG
* * *
36896453 GCTTAAATCTGTTTCCTTACTCCTAGGAAAGATAAGACTCGCC
1 GCTTAAATCTGTTTCCCTACTCCTAGGGAAGATAAGATTCGCC
* * * * *
36896496 GCTTAGATCTGTTTCCCTGCTCCTGGGGAAGATAAGATCCGCAA
1 GCTTAAATCTGTTTCCCTACTCCTAGGGAAGATAAGATTCGC-C
* * * ** * * * **
36896540 TCTTTAACCT-ACTCCGCTGC-CGCTCAGGG-AGACAAGGTTCGGTG
1 GCTTAAATCTGTTTCC-CTACTC-CT-AGGGAAGATAAGATTC-GCC
* *
36896584 GCTTAAATCTATTTCCCTACTCCTGGGGAAGATAAGATTCGCC
1 GCTTAAATCTGTTTCCCTACTCCTAGGGAAGATAAGATTCGCC
*
36896627 GCTTAGATCTGTTTCCCTACTCCTAGGGAAGATAAGAT
1 GCTTAAATCTGTTTCCCTACTCCTAGGGAAGATAAGAT
36896665 CCGCAATCTT
Statistics
Matches: 127, Mismatches: 34, Indels: 16
0.72 0.19 0.09
Matches are distributed among these distances:
43 78 0.61
44 41 0.32
45 8 0.06
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.29
Consensus pattern (43 bp):
GCTTAAATCTGTTTCCCTACTCCTAGGGAAGATAAGATTCGCC
Found at i:36897888 original size:6 final size:6
Alignment explanation
Indices: 36897887--36897924 Score: 58
Period size: 6 Copynumber: 6.2 Consensus size: 6
36897877 ACTTTTCATT
*
36897887 TTTTCA TTTTTCA TTTTCA TTTTCA TTTGCA TTTTCA T
1 TTTTCA -TTTTCA TTTTCA TTTTCA TTTTCA TTTTCA T
36897925 ATTTTCTGAC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
6 23 0.79
7 6 0.21
ACGTcount: A:0.16, C:0.16, G:0.03, T:0.66
Consensus pattern (6 bp):
TTTTCA
Found at i:36898863 original size:29 final size:26
Alignment explanation
Indices: 36898831--36898890 Score: 84
Period size: 29 Copynumber: 2.2 Consensus size: 26
36898821 CATATTTTTA
36898831 TTTTGACTTTGATTAGTTTCTCTTTTTGC
1 TTTTGACTTTGATT--TTT-TCTTTTTGC
*
36898860 TTTTGACTTTGATTTTTTCTTTTTGT
1 TTTTGACTTTGATTTTTTCTTTTTGC
36898886 TTTTG
1 TTTTG
36898891 TTTTTTTATT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 13 0.43
27 3 0.10
29 14 0.47
ACGTcount: A:0.08, C:0.10, G:0.13, T:0.68
Consensus pattern (26 bp):
TTTTGACTTTGATTTTTTCTTTTTGC
Found at i:36898881 original size:19 final size:19
Alignment explanation
Indices: 36898853--36898935 Score: 71
Period size: 19 Copynumber: 4.3 Consensus size: 19
36898843 TTAGTTTCTC
* *
36898853 TTTTTGCTTTTGACTTTGA
1 TTTTTTCTTTTGATTTTGA
* *
36898872 TTTTTTCTTTTTGTTTTTGT
1 TTTTTTC-TTTTGATTTTGA
*
36898892 TTTTTTATTTTGATTTT--
1 TTTTTTCTTTTGATTTTGA
*
36898909 TTATTTTGATTTTGATTTTGA
1 TT-TTTT-CTTTTGATTTTGA
36898930 TTTTTT
1 TTTTTT
36898936 TCTCTCTTTT
Statistics
Matches: 53, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
17 2 0.04
18 4 0.08
19 26 0.49
20 19 0.36
21 2 0.04
ACGTcount: A:0.10, C:0.04, G:0.11, T:0.76
Consensus pattern (19 bp):
TTTTTTCTTTTGATTTTGA
Found at i:36898895 original size:13 final size:13
Alignment explanation
Indices: 36898879--36898936 Score: 57
Period size: 12 Copynumber: 4.5 Consensus size: 13
36898869 TGATTTTTTC
*
36898879 TTTTTGTTTTTG-
1 TTTTTTTTTTTGA
36898891 TTTTTTTATTTTGA
1 TTTTTTT-TTTTGA
*
36898905 TTTTTTATTTTGA
1 TTTTTTTTTTTGA
**
36898918 -TTTTGATTTTGA
1 TTTTTTTTTTTGA
36898930 TTTTTTT
1 TTTTTTT
36898937 CTCTCTTTTC
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
12 17 0.45
13 15 0.39
14 6 0.16
ACGTcount: A:0.10, C:0.00, G:0.10, T:0.79
Consensus pattern (13 bp):
TTTTTTTTTTTGA
Found at i:36904051 original size:14 final size:14
Alignment explanation
Indices: 36904032--36904071 Score: 55
Period size: 13 Copynumber: 2.9 Consensus size: 14
36904022 AGTTTGTAGA
36904032 AAATAAACAAAAAT
1 AAATAAACAAAAAT
*
36904046 AAATAAA-TAAAAT
1 AAATAAACAAAAAT
*
36904059 AAAAAAACAAAAA
1 AAATAAACAAAAA
36904072 CGTAAAACAG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
13 11 0.50
14 11 0.50
ACGTcount: A:0.82, C:0.05, G:0.00, T:0.12
Consensus pattern (14 bp):
AAATAAACAAAAAT
Found at i:36908042 original size:23 final size:22
Alignment explanation
Indices: 36907990--36908042 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
36907980 TCCACGTCTT
*
36907990 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
36908012 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
36908035 TTTCTTTT
1 TTTCTTTT
36908043 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:36909366 original size:9 final size:9
Alignment explanation
Indices: 36909335--36909368 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
36909325 TTTTATTAAA
*
36909335 TTTTGTCTT
1 TTTTGACTT
36909344 TTTTGA-TT
1 TTTTGACTT
36909352 TTTTGACTT
1 TTTTGACTT
36909361 TTTTGACT
1 TTTTGACT
36909369 GATTATTTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
8 8 0.35
9 15 0.65
ACGTcount: A:0.09, C:0.09, G:0.12, T:0.71
Consensus pattern (9 bp):
TTTTGACTT
Found at i:36915668 original size:147 final size:147
Alignment explanation
Indices: 36915502--36915797 Score: 520
Period size: 147 Copynumber: 2.0 Consensus size: 147
36915492 TATTATAAAA
* * * *
36915502 TAAATAAATAGAGAGTAAAGAATAAAGAAAATGAGAAAGTAAAAGAGAGCTTAGCTTCTCTAAAG
1 TAAATAAATAAAGAGTAAAGAACAAAGAAAATGAGAAAGTAAAAGAGAGCGTAGCTTCTCCAAAG
36915567 TTTCTATTTATAGACATAATAAGTATAAATGAAGAAGAGATATACTTCTAATGACTATTAGAATT
66 TTTCTATTTATAGACATAATAAGTATAAATGAAGAAGAGATATACTTCTAATGACTATTAGAATT
*
36915632 TAAAGTATATAAAAACT
131 TAAAGTACATAAAAACT
*
36915649 TAAATAAATAAAGAGTAAAGAACAAAGAAAATGAGAAAGTAAAAGATAGCGTAGCTTCTCCAAAG
1 TAAATAAATAAAGAGTAAAGAACAAAGAAAATGAGAAAGTAAAAGAGAGCGTAGCTTCTCCAAAG
* *
36915714 TTTCTATTTATAGACATAATAAGTATAAATGAAGAAGAGATATATTTTTAATGACTATTAGAATT
66 TTTCTATTTATAGACATAATAAGTATAAATGAAGAAGAGATATACTTCTAATGACTATTAGAATT
36915779 TAAAGTACATAAAAACT
131 TAAAGTACATAAAAACT
36915796 TA
1 TA
36915798 TATTAATATT
Statistics
Matches: 141, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
147 141 1.00
ACGTcount: A:0.50, C:0.07, G:0.15, T:0.28
Consensus pattern (147 bp):
TAAATAAATAAAGAGTAAAGAACAAAGAAAATGAGAAAGTAAAAGAGAGCGTAGCTTCTCCAAAG
TTTCTATTTATAGACATAATAAGTATAAATGAAGAAGAGATATACTTCTAATGACTATTAGAATT
TAAAGTACATAAAAACT
Found at i:36916522 original size:28 final size:28
Alignment explanation
Indices: 36916489--36916542 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
36916479 TATAAAAATT
*
36916489 ATTAATAATATTATTTAAATCATAATAA
1 ATTAATAATAATATTTAAATCATAATAA
* *
36916517 ATTAATATTAATATTTAAATGATAAT
1 ATTAATAATAATATTTAAATCATAAT
36916543 TTTTATATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (28 bp):
ATTAATAATAATATTTAAATCATAATAA
Found at i:36918619 original size:26 final size:27
Alignment explanation
Indices: 36918564--36918625 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 27
36918554 AAAATTTATT
* *
36918564 AAAATAAAAATTATAAAAAATTAC-AG
1 AAAATATAAATTATAAAAAATTACAAA
** *
36918590 AAAATATAAATTATTCAAAATTATAAA
1 AAAATATAAATTATAAAAAATTACAAA
36918617 AAAATATAA
1 AAAATATAA
36918626 GAAAGTATTT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 20 0.67
27 10 0.33
ACGTcount: A:0.68, C:0.03, G:0.02, T:0.27
Consensus pattern (27 bp):
AAAATATAAATTATAAAAAATTACAAA
Found at i:36918696 original size:23 final size:24
Alignment explanation
Indices: 36918644--36918696 Score: 58
Period size: 23 Copynumber: 2.3 Consensus size: 24
36918634 TTTAAATTTA
36918644 TATTTAAAATTTAGAAAAGAAAAT
1 TATTTAAAATTTAGAAAAGAAAAT
* *
36918668 T-GTTAAAATTATA-AAAA-AAACT
1 TATTTAAAATT-TAGAAAAGAAAAT
36918690 TATTTAA
1 TATTTAA
36918697 TTTGTTAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
22 5 0.21
23 16 0.67
24 3 0.12
ACGTcount: A:0.57, C:0.02, G:0.06, T:0.36
Consensus pattern (24 bp):
TATTTAAAATTTAGAAAAGAAAAT
Found at i:36924600 original size:36 final size:36
Alignment explanation
Indices: 36924553--36924633 Score: 162
Period size: 36 Copynumber: 2.2 Consensus size: 36
36924543 TATCGTATGA
36924553 TTTGCCCATGTCTATTTTTAGTACAAAAGACCCCAT
1 TTTGCCCATGTCTATTTTTAGTACAAAAGACCCCAT
36924589 TTTGCCCATGTCTATTTTTAGTACAAAAGACCCCAT
1 TTTGCCCATGTCTATTTTTAGTACAAAAGACCCCAT
36924625 TTTGCCCAT
1 TTTGCCCAT
36924634 TCTCTTGTGC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 45 1.00
ACGTcount: A:0.26, C:0.26, G:0.11, T:0.37
Consensus pattern (36 bp):
TTTGCCCATGTCTATTTTTAGTACAAAAGACCCCAT
Found at i:36929961 original size:50 final size:50
Alignment explanation
Indices: 36929907--36930002 Score: 131
Period size: 50 Copynumber: 1.9 Consensus size: 50
36929897 TTTGAAATCG
* *
36929907 TCCATG-TCATGTATTTAAATGAGATAAACATTTCTATGCATTGAAAACCA
1 TCCATGATCATGTATTTAAATGACA-AAACATCTCTATGCATTGAAAACCA
* * *
36929957 TCCATGATCATGTATTTGAATGACAAAACGTCTCTGTGCATTGAAA
1 TCCATGATCATGTATTTAAATGACAAAACATCTCTATGCATTGAAA
36930003 TTGTCCATAT
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
50 24 0.60
51 16 0.40
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (50 bp):
TCCATGATCATGTATTTAAATGACAAAACATCTCTATGCATTGAAAACCA
Found at i:36930040 original size:20 final size:22
Alignment explanation
Indices: 36929997--36930045 Score: 75
Period size: 23 Copynumber: 2.3 Consensus size: 22
36929987 TCTCTGTGCA
36929997 TTGAAATTGTCCATATCCCATGC
1 TTGAAATTGTCCATAT-CCATGC
36930020 TTGAAATTGTCCAT-T-CATGC
1 TTGAAATTGTCCATATCCATGC
36930040 TTGAAA
1 TTGAAA
36930046 CGTCCATCCT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
20 11 0.42
22 1 0.04
23 14 0.54
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (22 bp):
TTGAAATTGTCCATATCCATGC
Found at i:36930052 original size:19 final size:19
Alignment explanation
Indices: 36930015--36930080 Score: 62
Period size: 19 Copynumber: 3.5 Consensus size: 19
36930005 GTCCATATCC
*
36930015 CATGCTTGAAATTGTCCATT
1 CATGCTTGAAA-CGTCCATT
*
36930035 CATGCTTGAAACGTCCATC
1 CATGCTTGAAACGTCCATT
* * * *
36930054 CTTGATTGAAACATTCA-T
1 CATGCTTGAAACGTCCATT
36930072 CATGCTTGA
1 CATGCTTGA
36930081 TGTATGAAAA
Statistics
Matches: 37, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
18 7 0.19
19 19 0.51
20 11 0.30
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.35
Consensus pattern (19 bp):
CATGCTTGAAACGTCCATT
Found at i:36931990 original size:21 final size:21
Alignment explanation
Indices: 36931964--36932006 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
36931954 AGGATTTCTA
* *
36931964 GTATTAATAATGTTGTTAATT
1 GTATTAACAATATTGTTAATT
36931985 GTATTAACAATATTGTTAATT
1 GTATTAACAATATTGTTAATT
36932006 G
1 G
36932007 AGTTGGTGTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.35, C:0.02, G:0.14, T:0.49
Consensus pattern (21 bp):
GTATTAACAATATTGTTAATT
Found at i:36933210 original size:22 final size:22
Alignment explanation
Indices: 36933166--36933213 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
36933156 ATATAATAGT
* *
36933166 GAAATTGTAGCAAGACAACAGC
1 GAAATAGTAGCAAAACAACAGC
**
36933188 GAAATAGTAGCAAAACAGTAGC
1 GAAATAGTAGCAAAACAACAGC
36933210 GAAA
1 GAAA
36933214 CAACAACAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.50, C:0.15, G:0.23, T:0.12
Consensus pattern (22 bp):
GAAATAGTAGCAAAACAACAGC
Found at i:36933632 original size:31 final size:31
Alignment explanation
Indices: 36933594--36933714 Score: 140
Period size: 31 Copynumber: 4.0 Consensus size: 31
36933584 GGCCCATTTT
36933594 TATTTTAAAAAT-TTTAAAAAATTAAAAAAAG
1 TATTTTAAAAATATTT-AAAAATTAAAAAAAG
*
36933625 TATTTTAAAAATATTTTAAAATTAAAAAAA-
1 TATTTTAAAAATATTTAAAAATTAAAAAAAG
* ** *
36933655 TATTTTAAAATTA-AAAAAAAATAAAAAAAG
1 TATTTTAAAAATATTTAAAAATTAAAAAAAG
* * *
36933685 TATGTAAAAAATATTTTAAAATTAAAAAAA
1 TATTTTAAAAATATTTAAAAATTAAAAAAA
36933715 TAAATATATT
Statistics
Matches: 74, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
29 12 0.16
30 22 0.30
31 37 0.50
32 3 0.04
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (31 bp):
TATTTTAAAAATATTTAAAAATTAAAAAAAG
Found at i:36933634 original size:11 final size:11
Alignment explanation
Indices: 36933594--36933645 Score: 56
Period size: 10 Copynumber: 4.9 Consensus size: 11
36933584 GGCCCATTTT
36933594 TATTTT-AAAA
1 TATTTTAAAAA
36933604 -ATTTTAAAAA
1 TATTTTAAAAA
**
36933614 -ATTAAAAAAA
1 TATTTTAAAAA
36933624 GTATTTTAAAAA
1 -TATTTTAAAAA
36933636 TATTTTAAAA
1 TATTTTAAAA
36933646 TTAAAAAAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
9 5 0.14
10 12 0.34
11 10 0.29
12 8 0.23
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (11 bp):
TATTTTAAAAA
Found at i:36933655 original size:19 final size:19
Alignment explanation
Indices: 36933631--36933716 Score: 100
Period size: 19 Copynumber: 4.4 Consensus size: 19
36933621 AAAGTATTTT
36933631 AAAAATATTTTAAAATTAA
1 AAAAATATTTTAAAATTAA
36933650 AAAAATATTTTAAAATTAA
1 AAAAATATTTTAAAATTAA
* *** *
36933669 AAAAAAATAAAAAAAGTATGTA
1 AAAAATATTTTAAAA-T-T-AA
36933691 AAAAATATTTTAAAATTAA
1 AAAAATATTTTAAAATTAA
36933710 AAAAATA
1 AAAAATA
36933717 AATATATTTA
Statistics
Matches: 54, Mismatches: 10, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
19 38 0.70
20 2 0.04
21 2 0.04
22 12 0.22
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (19 bp):
AAAAATATTTTAAAATTAA
Found at i:36933680 original size:60 final size:61
Alignment explanation
Indices: 36933594--36933716 Score: 194
Period size: 60 Copynumber: 2.0 Consensus size: 61
36933584 GGCCCATTTT
** * * *
36933594 TATTTTAAAAATTTTAAAAAATTAAAAAAAGTATTTTAAAAATATTTTAAAATTAAAAAAA
1 TATTTTAAAAATTAAAAAAAAATAAAAAAAGTATGTAAAAAATATTTTAAAATTAAAAAAA
36933655 TATTTT-AAAATTAAAAAAAAATAAAAAAAGTATGTAAAAAATATTTTAAAATTAAAAAAA
1 TATTTTAAAAATTAAAAAAAAATAAAAAAAGTATGTAAAAAATATTTTAAAATTAAAAAAA
36933715 TA
1 TA
36933717 AATATATTTA
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
60 51 0.89
61 6 0.11
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.34
Consensus pattern (61 bp):
TATTTTAAAAATTAAAAAAAAATAAAAAAAGTATGTAAAAAATATTTTAAAATTAAAAAAA
Found at i:36934121 original size:27 final size:28
Alignment explanation
Indices: 36934091--36934150 Score: 104
Period size: 28 Copynumber: 2.2 Consensus size: 28
36934081 TTCAATTTTA
36934091 AATTATAAATCAATG-TTAATTTAGACT
1 AATTATAAATCAATGTTTAATTTAGACT
*
36934118 AATTATAAATCAATGTTTAATTTGGACT
1 AATTATAAATCAATGTTTAATTTAGACT
36934146 AATTA
1 AATTA
36934151 ATTTGAAGGC
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 15 0.48
28 16 0.52
ACGTcount: A:0.43, C:0.07, G:0.08, T:0.42
Consensus pattern (28 bp):
AATTATAAATCAATGTTTAATTTAGACT
Found at i:36934622 original size:33 final size:35
Alignment explanation
Indices: 36934566--36934638 Score: 123
Period size: 33 Copynumber: 2.1 Consensus size: 35
36934556 TATAAACAGT
36934566 TGCAAAGATTAAAGAAAAAAAAAAATAGAGGTTAGC
1 TGCAAAGATT-AAGAAAAAAAAAAATAGAGGTTAGC
36934602 TGCAAAGATT-A-AAAAAAAAAAATAGAGGTTAGC
1 TGCAAAGATTAAGAAAAAAAAAAATAGAGGTTAGC
36934635 TGCA
1 TGCA
36934639 GTTCTCAATT
Statistics
Matches: 37, Mismatches: 0, Indels: 3
0.93 0.00 0.08
Matches are distributed among these distances:
33 26 0.70
34 1 0.03
36 10 0.27
ACGTcount: A:0.56, C:0.07, G:0.19, T:0.18
Consensus pattern (35 bp):
TGCAAAGATTAAGAAAAAAAAAAATAGAGGTTAGC
Found at i:36935348 original size:20 final size:20
Alignment explanation
Indices: 36935288--36935350 Score: 60
Period size: 20 Copynumber: 3.2 Consensus size: 20
36935278 TGGAAGGGAG
*
36935288 AAAG-AAAAAGG-AAAATGA
1 AAAGAAAAAAGGAAAAATAA
*
36935306 AAAGAAAAAAGGGAATGAA-AA
1 AAAGAAAAAA-GGAA-AAATAA
*
36935327 AAATAAAAAAGGAAAAATAA
1 AAAGAAAAAAGGAAAAATAA
36935347 AAAG
1 AAAG
36935351 TGGTGGGCCG
Statistics
Matches: 35, Mismatches: 5, Indels: 8
0.73 0.10 0.17
Matches are distributed among these distances:
18 4 0.11
19 7 0.20
20 11 0.31
21 11 0.31
22 2 0.06
ACGTcount: A:0.75, C:0.00, G:0.19, T:0.06
Consensus pattern (20 bp):
AAAGAAAAAAGGAAAAATAA
Found at i:36936644 original size:12 final size:12
Alignment explanation
Indices: 36936629--36936683 Score: 53
Period size: 12 Copynumber: 4.8 Consensus size: 12
36936619 TCCAAACATC
36936629 AAAAACAACAGT
1 AAAAACAACAGT
* *
36936641 AAAAATAACAGC
1 AAAAACAACAGT
36936653 AAAAACAAC---
1 AAAAACAACAGT
* *
36936662 AAAAATAGCAGT
1 AAAAACAACAGT
36936674 AAAAACAACA
1 AAAAACAACA
36936684 CCAAAACACC
Statistics
Matches: 33, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
9 7 0.21
12 26 0.79
ACGTcount: A:0.69, C:0.16, G:0.07, T:0.07
Consensus pattern (12 bp):
AAAAACAACAGT
Found at i:36936659 original size:33 final size:33
Alignment explanation
Indices: 36936609--36936689 Score: 94
Period size: 33 Copynumber: 2.5 Consensus size: 33
36936599 AAAATAAACA
*
36936609 AAAAATAACATCC--AAACATCAAAAACAACAGT
1 AAAAATAACA-CCAAAAACAACAAAAACAACAGT
* * *
36936641 AAAAATAACAGCAAAAACAACAAAAATAGCAGT
1 AAAAATAACACCAAAAACAACAAAAACAACAGT
*
36936674 AAAAACAACACCAAAA
1 AAAAATAACACCAAAA
36936690 CACCAAGAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
31 1 0.02
32 10 0.24
33 30 0.73
ACGTcount: A:0.67, C:0.20, G:0.05, T:0.09
Consensus pattern (33 bp):
AAAAATAACACCAAAAACAACAAAAACAACAGT
Found at i:36936665 original size:21 final size:21
Alignment explanation
Indices: 36936623--36936683 Score: 68
Period size: 21 Copynumber: 2.8 Consensus size: 21
36936613 ATAACATCCA
*
36936623 AACATCAAAAACAACAGTAAAAAT
1 AACAGCAAAAACAAC---AAAAAT
36936647 AACAGCAAAAACAACAAAAAT
1 AACAGCAAAAACAACAAAAAT
* *
36936668 AGCAGTAAAAACAACA
1 AACAGCAAAAACAACA
36936684 CCAAAACACC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
21 20 0.59
24 14 0.41
ACGTcount: A:0.67, C:0.18, G:0.07, T:0.08
Consensus pattern (21 bp):
AACAGCAAAAACAACAAAAAT
Found at i:36936689 original size:12 final size:12
Alignment explanation
Indices: 36936623--36936662 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
36936613 ATAACATCCA
*
36936623 AACATCAAAAAC
1 AACAGCAAAAAC
* *
36936635 AACAGTAAAAAT
1 AACAGCAAAAAC
36936647 AACAGCAAAAAC
1 AACAGCAAAAAC
36936659 AACA
1 AACA
36936663 AAAATAGCAG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.68, C:0.20, G:0.05, T:0.07
Consensus pattern (12 bp):
AACAGCAAAAAC
Found at i:36936701 original size:32 final size:33
Alignment explanation
Indices: 36936622--36936703 Score: 94
Period size: 33 Copynumber: 2.5 Consensus size: 33
36936612 AATAACATCC
* * * *
36936622 AAACATCAAAAACAACAGTAAAAATAACAGCAA
1 AAACAACAAAAATAGCAGTAAAAACAACAGCAA
*
36936655 AAACAACAAAAATAGCAGTAAAAACAACA-CCA
1 AAACAACAAAAATAGCAGTAAAAACAACAGCAA
* *
36936687 AAACACCAAGAATAGCA
1 AAACAACAAAAATAGCA
36936704 AAAAAGCAAC
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
32 17 0.40
33 25 0.60
ACGTcount: A:0.65, C:0.21, G:0.07, T:0.07
Consensus pattern (33 bp):
AAACAACAAAAATAGCAGTAAAAACAACAGCAA
Found at i:36946357 original size:118 final size:118
Alignment explanation
Indices: 36946149--36946382 Score: 450
Period size: 118 Copynumber: 2.0 Consensus size: 118
36946139 AGTAGAACTT
*
36946149 TGACGGGAGCCCAACGCAATTATACGGTAACCGAAAAGGAACTCTTCGCTATAGTTTTTGCTTTT
1 TGACGGGAGCCCAACGCAATTATACGGTAACCGAAAAGGAACTCTTCGCTATAGTTTTTGCTTTC
36946214 GAAAAATTCCGCTCATATCTTATAGGTACCAAAGTTACAGTATTTACTAACCA
66 GAAAAATTCCGCTCATATCTTATAGGTACCAAAGTTACAGTATTTACTAACCA
*
36946267 TGACGGGAGCCCAACGCAATTATACGGTAATCGAAAAGGAACTCTTCGCTATAGTTTTTGCTTTC
1 TGACGGGAGCCCAACGCAATTATACGGTAACCGAAAAGGAACTCTTCGCTATAGTTTTTGCTTTC
36946332 GAAAAATTCCGCTCATATCTTATAGGTACCAAAGTTACAGTATTTACTAAC
66 GAAAAATTCCGCTCATATCTTATAGGTACCAAAGTTACAGTATTTACTAAC
36946383 TATGCGGCCA
Statistics
Matches: 114, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
118 114 1.00
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (118 bp):
TGACGGGAGCCCAACGCAATTATACGGTAACCGAAAAGGAACTCTTCGCTATAGTTTTTGCTTTC
GAAAAATTCCGCTCATATCTTATAGGTACCAAAGTTACAGTATTTACTAACCA
Found at i:36947765 original size:50 final size:50
Alignment explanation
Indices: 36947637--36947875 Score: 237
Period size: 50 Copynumber: 4.7 Consensus size: 50
36947627 ATTTGGGTAA
*
36947637 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTGAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CC---A-A-CATG
* * * *
36947693 AGAGGTTCCATGCAAGACCATGTCTGGGACATGGCGTTGGCACCAAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAACATG
** * * *
36947743 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAACATG
** * * **
36947793 AGAACTCCCATGTAAGACCATATCTGGGATATGGCATTGGCA-GTACATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAACATG
* ** *
36947842 AAACATCCTATGTAAGACCATGTCTGGGACATGG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGG
36947876 TTTTGGCATG
Statistics
Matches: 154, Mismatches: 29, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
49 32 0.21
50 80 0.52
51 1 0.01
52 1 0.01
55 2 0.01
56 38 0.25
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAACATG
Found at i:36955176 original size:9 final size:9
Alignment explanation
Indices: 36955162--36955255 Score: 118
Period size: 9 Copynumber: 10.4 Consensus size: 9
36955152 TTCAGTTAAA
36955162 AATTAACCG
1 AATTAACCG
36955171 AATTAACCG
1 AATTAACCG
36955180 AATT-ACTCG
1 AATTAAC-CG
36955189 AATTAACCG
1 AATTAACCG
*
36955198 AATTAACTG
1 AATTAACCG
* *
36955207 GATTACCCG
1 AATTAACCG
*
36955216 AATTAACTG
1 AATTAACCG
* *
36955225 AATTACCCA
1 AATTAACCG
36955234 AATTAACCG
1 AATTAACCG
36955243 AATTAACCG
1 AATTAACCG
36955252 AATT
1 AATT
36955256 GAATCACTAC
Statistics
Matches: 71, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
8 2 0.03
9 67 0.94
10 2 0.03
ACGTcount: A:0.41, C:0.21, G:0.11, T:0.27
Consensus pattern (9 bp):
AATTAACCG
Found at i:36955398 original size:18 final size:18
Alignment explanation
Indices: 36955362--36955401 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
36955352 TTTATGATTA
**
36955362 GGTTGGGTTGGGTAATTG
1 GGTTGGGTTGAATAATTG
*
36955380 GGTTGGGTTGAATACTTG
1 GGTTGGGTTGAATAATTG
36955398 GGTT
1 GGTT
36955402 TGGATTGGGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.12, C:0.03, G:0.45, T:0.40
Consensus pattern (18 bp):
GGTTGGGTTGAATAATTG
Found at i:36956565 original size:28 final size:28
Alignment explanation
Indices: 36956484--36956568 Score: 109
Period size: 30 Copynumber: 3.0 Consensus size: 28
36956474 TATACAGTAT
* *
36956484 CAGT-ACAGTGTGGGCCTTAGCCCATTA
1 CAGTAACAGTGTGGGCTTTAGCCCAATA
*
36956511 TAGTAACAATGTGTGGGCTTTAGCCCAATA
1 CAGTAAC-A-GTGTGGGCTTTAGCCCAATA
*
36956541 CAGTAACAGTGGGGGCTTTAGCCCAATA
1 CAGTAACAGTGTGGGCTTTAGCCCAATA
36956569 TTGTAATCAG
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
27 3 0.06
28 21 0.42
29 2 0.04
30 24 0.48
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (28 bp):
CAGTAACAGTGTGGGCTTTAGCCCAATA
Found at i:36956574 original size:28 final size:28
Alignment explanation
Indices: 36956488--36956580 Score: 114
Period size: 28 Copynumber: 3.2 Consensus size: 28
36956478 CAGTATCAGT
* *
36956488 ACAGTGTGGGCCTTAGCCCATTATAGTA
1 ACAGTGTGGGCTTTAGCCCAATATAGTA
*
36956516 ACAATGTGTGGGCTTTAGCCCAATACAGTA
1 AC-A-GTGTGGGCTTTAGCCCAATATAGTA
* *
36956546 ACAGTGGGGGCTTTAGCCCAATATTGTA
1 ACAGTGTGGGCTTTAGCCCAATATAGTA
36956574 ATCAGTG
1 A-CAGTG
36956581 CAATGCAGTA
Statistics
Matches: 56, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
28 25 0.45
29 7 0.12
30 24 0.43
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (28 bp):
ACAGTGTGGGCTTTAGCCCAATATAGTA
Found at i:36956713 original size:26 final size:26
Alignment explanation
Indices: 36956684--36956760 Score: 100
Period size: 26 Copynumber: 3.0 Consensus size: 26
36956674 ACACCAATAT
* * *
36956684 CGCAGCAAAGCTGCCAGTAATAGTGA
1 CGCAACAAAGCTGCCAGTAACAGTAA
*
36956710 CGCATCAAAGCTGCCAGTAACAGTAA
1 CGCAACAAAGCTGCCAGTAACAGTAA
* *
36956736 CACAACAAAGTTGCCAGTAACAGTA
1 CGCAACAAAGCTGCCAGTAACAGTA
36956761 TATGTGGCAA
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.39, C:0.25, G:0.21, T:0.16
Consensus pattern (26 bp):
CGCAACAAAGCTGCCAGTAACAGTAA
Found at i:36956952 original size:27 final size:26
Alignment explanation
Indices: 36956922--36957238 Score: 155
Period size: 27 Copynumber: 11.8 Consensus size: 26
36956912 TTTCAATTCC
**
36956922 TAGGGGTATAACAGTCATTTTACCCTA
1 TAGGGGTATTTCAGTCATTTTA-CCTA
* *
36956949 TAGGAGTATTTC-GATCATTTTACCTT
1 TAGGGGTATTTCAG-TCATTTTACCTA
36956975 TCAGGGGTATTTCAGTCATTTTAACCT-
1 T-AGGGGTATTTCAGTCATTTT-ACCTA
* * *
36957002 TCGAAGGTATTTCTA-TCATTTTACCCTT
1 TAG-GGGTATTTC-AGTCATTTTA-CCTA
* * * *
36957030 TAAGGGTATTTCGGTTATTTTACCTT
1 TAGGGGTATTTCAGTCATTTTACCTA
36957056 TAGGGGATATTTCAGTCATTTTACCCT-
1 TAGGGG-TATTTCAGTCATTTTA-CCTA
*** ** *
36957083 TCAAATGTATTTTGGTCATTTTACTCTT
1 T-AGGGGTATTTCAGTCATTTTAC-CTA
* *
36957111 TAAGGGTATTTCAGTCATGTTACCCT-
1 TAGGGGTATTTCAGTCATTTTA-CCTA
* * *
36957137 TCAAGAGTATTTC-GATCATTTTACCTT
1 T-AGGGGTATTTCAG-TCATTTTACCTA
* * *
36957164 TTGAGGGTATTTCGGTCATTGTACC-A
1 TAG-GGGTATTTCAGTCATTTTACCTA
*
36957190 TTCGAGGGTATTTCAGTCATTTTACCCT-
1 -TAG-GGGTATTTCAGTCATTTTA-CCTA
* *
36957218 TCAAGGGTATTTCGGTCATTT
1 T-AGGGGTATTTCAGTCATTT
36957239 GCTATGAATC
Statistics
Matches: 228, Mismatches: 38, Indels: 48
0.73 0.12 0.15
Matches are distributed among these distances:
26 22 0.10
27 189 0.83
28 17 0.07
ACGTcount: A:0.22, C:0.17, G:0.17, T:0.43
Consensus pattern (26 bp):
TAGGGGTATTTCAGTCATTTTACCTA
Found at i:36957050 original size:81 final size:81
Alignment explanation
Indices: 36956935--36957238 Score: 314
Period size: 81 Copynumber: 3.8 Consensus size: 81
36956925 GGGTATAACA
* * *
36956935 GTCATTTTACCCTAT-AGGAGTATTTC-GATCATTTTACCTTTCAGGGGTATTTCAGTCATTTTA
1 GTCATTTTACCCTTTAAGG-GTATTTCAG-TCATTTTACCCTTCAAGGGTATTTCAGTCATTTTA
36956998 ACCTTCGAAGGTATTTCT
64 ACCTTCGAAGGTATTTCT
* * * * * *
36957016 ATCATTTTACCCTTTAAGGGTATTTCGGTTATTTTA-CCTTTAGGGGATATTTCAGTCATTTTAC
1 GTCATTTTACCCTTTAAGGGTATTTCAGTCATTTTACCCTTCAAGGG-TATTTCAGTCATTTTAA
* *
36957080 CCTTCAAATGTATTT-T
65 CCTTCGAAGGTATTTCT
* * *
36957096 GGTCATTTTACTCTTTAAGGGTATTTCAGTCATGTTACCCTTCAAGAGTATTTC-GATCATTTT-
1 -GTCATTTTACCCTTTAAGGGTATTTCAGTCATTTTACCCTTCAAGGGTATTTCAG-TCATTTTA
* * *
36957159 ACCTTTTGAGGGTATTTCG
64 ACC-TTCGAAGGTATTTCT
* * ** *
36957178 GTCATTGTACCATTCGAGGGTATTTCAGTCATTTTACCCTTCAAGGGTATTTCGGTCATTT
1 GTCATTTTACCCTTTAAGGGTATTTCAGTCATTTTACCCTTCAAGGGTATTTCAGTCATTT
36957239 GCTATGAATC
Statistics
Matches: 185, Mismatches: 29, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
80 12 0.06
81 161 0.87
82 12 0.06
ACGTcount: A:0.21, C:0.18, G:0.17, T:0.44
Consensus pattern (81 bp):
GTCATTTTACCCTTTAAGGGTATTTCAGTCATTTTACCCTTCAAGGGTATTTCAGTCATTTTAAC
CTTCGAAGGTATTTCT
Found at i:36957231 original size:54 final size:54
Alignment explanation
Indices: 36956933--36957238 Score: 305
Period size: 54 Copynumber: 5.7 Consensus size: 54
36956923 AGGGGTATAA
* * * *
36956933 CAGTCATTTTACCCTAT-AGGAGTATTTCGATCATTTTACCTTTCAGGGGTATTT
1 CAGTCATTTTACCCTTTAAGG-GTATTTCGGTCATTTTACCCTTCAAGGGTATTT
* * ** *
36956987 CAGTCATTTTAACCTTCGAA-GGTATTTCTATCATTTTACCCTTTAAGGGTATTT
1 CAGTCATTTTACCCTT-TAAGGGTATTTCGGTCATTTTACCCTTCAAGGGTATTT
* * * * **
36957041 CGGTTATTTTA-CCTTTAGGGGATATTTCAGTCATTTTACCCTTCAAATGTATTT
1 CAGTCATTTTACCCTTTAAGGG-TATTTCGGTCATTTTACCCTTCAAGGGTATTT
** * * * *
36957095 TGGTCATTTTACTCTTTAAGGGTATTTCAGTCATGTTACCCTTCAAGAGTATTT
1 CAGTCATTTTACCCTTTAAGGGTATTTCGGTCATTTTACCCTTCAAGGGTATTT
* * * * *
36957149 C-GATCATTTTACCTTTTGAGGGTATTTCGGTCATTGTACCATTCGAGGGTATTT
1 CAG-TCATTTTACCCTTTAAGGGTATTTCGGTCATTTTACCCTTCAAGGGTATTT
*
36957203 CAGTCATTTTACCCTTCAAGGGTATTTCGGTCATTT
1 CAGTCATTTTACCCTTTAAGGGTATTTCGGTCATTT
36957239 GCTATGAATC
Statistics
Matches: 208, Mismatches: 37, Indels: 14
0.80 0.14 0.05
Matches are distributed among these distances:
52 1 0.00
53 7 0.03
54 189 0.91
55 10 0.05
56 1 0.00
ACGTcount: A:0.22, C:0.18, G:0.17, T:0.44
Consensus pattern (54 bp):
CAGTCATTTTACCCTTTAAGGGTATTTCGGTCATTTTACCCTTCAAGGGTATTT
Found at i:36961960 original size:79 final size:80
Alignment explanation
Indices: 36961817--36962035 Score: 225
Period size: 79 Copynumber: 2.8 Consensus size: 80
36961807 GATGTCCGGG
* * ** *
36961817 CTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATTCGGACTAAGAT-CCGAAGGCATTTGTG
1 CTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATAACCGGGCTAAG-TCCCGAAGGCATTTGTG
*
36961879 CGAGATACTAATTCCAGA
63 CGAGATACTAAATCCAGA
* *
36961897 CTAAGAT-CCGAAGGCATTTGTGTGAGATACTA-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGC
1 CTAAG-TCCCGAAGGCATTTGTGCGAGATACTATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGC
* * *
36961959 GAGTTACTAAATCCGGG
64 GAGATACTAAATCCAGA
* * *
36961976 TTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTG
1 CTAAGTCCCGAAGGCATTTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTTG
36962036 AACGAGTAGC
Statistics
Matches: 117, Mismatches: 14, Indels: 16
0.80 0.10 0.11
Matches are distributed among these distances:
78 1 0.01
79 66 0.56
80 40 0.34
81 9 0.08
82 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (80 bp):
CTAAGTCCCGAAGGCATTTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGA
GATACTAAATCCAGA
Found at i:36962042 original size:40 final size:40
Alignment explanation
Indices: 36961811--36962035 Score: 244
Period size: 40 Copynumber: 5.7 Consensus size: 40
36961801 TCGAATGATG
* * * *
36961811 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
36961851 TTCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * * *
36961891 TCCAGACTAAGAT-CCGAAGGCATTTGTGTGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
36961931 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
36961970 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
36962011 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
36962036 AACGAGTAGC
Statistics
Matches: 161, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
39 34 0.21
40 117 0.73
41 10 0.06
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:36962054 original size:119 final size:120
Alignment explanation
Indices: 36961811--36962041 Score: 256
Period size: 119 Copynumber: 1.9 Consensus size: 120
36961801 TCGAATGATG
* *
36961811 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATTCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* ***
36961876 GTGCGAGATACTAATTCCAGACTAAGATCCGAAGGCATTTGTGTGAGATACTAAT
66 GTGCGAGATACTAATACCAGACTAAGATCCGAAGGCATTTGAACGAGATACTAAT
* * * **
36961931 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
36961993 TTGTGCGAGTTACT-ATAACCGGGCTATG-TCCCGAAGGCATTTGAACGAG
64 TTGTGCGAGATACTAAT-ACCAGACTAAGAT-CCGAAGGCATTTGAACGAG
36962042 TAGCTATATC
Statistics
Matches: 92, Mismatches: 15, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
118 4 0.04
119 70 0.76
120 18 0.20
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCAGACTAAGATCCGAAGGCATTTGAACGAGATACTAAT
Found at i:36962057 original size:79 final size:79
Alignment explanation
Indices: 36961864--36962058 Score: 200
Period size: 79 Copynumber: 2.5 Consensus size: 79
36961854 GGACTAAGAT
** * * * ** *
36961864 CCGAAGGCATTTGTGCGAGATACTAATTCCAGACTAAGAT-CCGAAGGCATTTGTGTGAGATACT
1 CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGATACT
*
36961928 AATTCCGGGCTAAGC
65 AATACCGGGCTAAGC
** *
36961943 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-
1 CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTA
*
36962007 ATAACCGGGCTATGTC
66 AT-ACCGGGCTAAG-C
*
36962023 CCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAA
1 CCGAAGGCATTTGAACGAGTTA-CTAAATCCGGGTTAA
36962059 ATTCTGAAGG
Statistics
Matches: 100, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 72 0.72
80 25 0.25
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTA
ATACCGGGCTAAGC
Found at i:36963648 original size:23 final size:23
Alignment explanation
Indices: 36963622--36963670 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
36963612 GGTTGAAGTT
36963622 AGTTTTGTGGCTTTAAATGATGG
1 AGTTTTGTGGCTTTAAATGATGG
*
36963645 AGTTTTGTGGCTTTAAATGATTG
1 AGTTTTGTGGCTTTAAATGATGG
36963668 AGT
1 AGT
36963671 GATACTTGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.22, C:0.04, G:0.29, T:0.45
Consensus pattern (23 bp):
AGTTTTGTGGCTTTAAATGATGG
Found at i:36970675 original size:21 final size:21
Alignment explanation
Indices: 36970649--36970696 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
36970639 CAATTTTTTT
* * *
36970649 CTATTTTTTATTAGTTTGTTG
1 CTATTTTTCACTAGTTTGTTA
*
36970670 CTATTTTTCACTATTTTGTTA
1 CTATTTTTCACTAGTTTGTTA
36970691 CTATTT
1 CTATTT
36970697 CACAATTATG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.17, C:0.10, G:0.08, T:0.65
Consensus pattern (21 bp):
CTATTTTTCACTAGTTTGTTA
Found at i:36981321 original size:16 final size:16
Alignment explanation
Indices: 36981300--36981345 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
36981290 AATTGGGTTG
36981300 AGAAAATTATTTAATT
1 AGAAAATTATTTAATT
*
36981316 AGAAAATTAATTAATT
1 AGAAAATTATTTAATT
36981332 --AAAATTAATTTAAT
1 AGAAAATT-ATTTAAT
36981346 AAATAATATC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
14 6 0.22
15 6 0.22
16 15 0.56
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.41
Consensus pattern (16 bp):
AGAAAATTATTTAATT
Found at i:36982352 original size:20 final size:21
Alignment explanation
Indices: 36982327--36982369 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
36982317 CCGATGCTGG
36982327 TGAAA-GGTAAAGATACTTTT
1 TGAAAGGGTAAAGATACTTTT
**
36982347 TGAAAGGGTATCGATACTTTT
1 TGAAAGGGTAAAGATACTTTT
36982368 TG
1 TG
36982370 TACCACCCCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.37
Consensus pattern (21 bp):
TGAAAGGGTAAAGATACTTTT
Found at i:36983611 original size:29 final size:29
Alignment explanation
Indices: 36983579--36983760 Score: 215
Period size: 29 Copynumber: 6.3 Consensus size: 29
36983569 GTCACCATCA
36983579 CTTTTCATAATCGATAGCCGAAGCTATCC
1 CTTTTCATAATCGATAGCCGAAGCTATCC
* *
36983608 CTTTTCATTATCGATAGTCGAAGCTATCC
1 CTTTTCATAATCGATAGCCGAAGCTATCC
*
36983637 CTTTTCATATTCGATAGCCGAAGCTATCC
1 CTTTTCATAATCGATAGCCGAAGCTATCC
* *
36983666 CTTTTCATATTCGATAGCTGAAGCTATCC
1 CTTTTCATAATCGATAGCCGAAGCTATCC
** * * * * *
36983695 CTTTTCATGTTTGATGGTCGTTA-CCATCC
1 CTTTTCATAATCGATAGCCG-AAGCTATCC
*
36983724 CTATTT-ATAATCGATAGCAGAAGCTATCC
1 CT-TTTCATAATCGATAGCCGAAGCTATCC
36983753 CTTTTCAT
1 CTTTTCAT
36983761 TAGTCGATGG
Statistics
Matches: 128, Mismatches: 21, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
28 4 0.03
29 120 0.94
30 4 0.03
ACGTcount: A:0.24, C:0.25, G:0.14, T:0.37
Consensus pattern (29 bp):
CTTTTCATAATCGATAGCCGAAGCTATCC
Found at i:36983692 original size:87 final size:87
Alignment explanation
Indices: 36983579--36983760 Score: 244
Period size: 87 Copynumber: 2.1 Consensus size: 87
36983569 GTCACCATCA
*
36983579 CTTTTCATAATCGATAGCCGAAGCTATCCCTTTTCAT-TATCGATAGTCG-AAGCTATCCCT-TT
1 CTTTTCATAATCGATAGCCGAAGCTATCCCTTTTCATGT-TCGATAGTCGTAA-CCATCCCTATT
* *
36983641 TCATATTCGATAGCCGAAGCTATCC
64 T-ATAATCGATAGCAGAAGCTATCC
* * * * *
36983666 CTTTTCATATTCGATAGCTGAAGCTATCCCTTTTCATGTTTGATGGTCGTTACCATCCCTATTTA
1 CTTTTCATAATCGATAGCCGAAGCTATCCCTTTTCATGTTCGATAGTCGTAACCATCCCTATTTA
36983731 TAATCGATAGCAGAAGCTATCC
66 TAATCGATAGCAGAAGCTATCC
36983753 CTTTTCAT
1 CTTTTCAT
36983761 TAGTCGATGG
Statistics
Matches: 84, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
87 79 0.94
88 5 0.06
ACGTcount: A:0.24, C:0.25, G:0.14, T:0.37
Consensus pattern (87 bp):
CTTTTCATAATCGATAGCCGAAGCTATCCCTTTTCATGTTCGATAGTCGTAACCATCCCTATTTA
TAATCGATAGCAGAAGCTATCC
Found at i:37030420 original size:44 final size:44
Alignment explanation
Indices: 37030353--37030454 Score: 114
Period size: 44 Copynumber: 2.3 Consensus size: 44
37030343 GTCCAACTAT
* * * * *
37030353 GGTCTTACACATGTTTACCATGATGCCATAACATCTTTCAACCAT
1 GGTCTTACTCAT-TATATCATGATGACATAACATCTTTCAACCAG
* * * *
37030398 GTTCTTACTCATTATATCATGATGAGATAGCATCTTTCAACTAG
1 GGTCTTACTCATTATATCATGATGACATAACATCTTTCAACCAG
37030442 GGTCTTACTCATT
1 GGTCTTACTCATT
37030455 TTAGGTGCAT
Statistics
Matches: 47, Mismatches: 10, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
44 37 0.79
45 10 0.21
ACGTcount: A:0.27, C:0.23, G:0.13, T:0.37
Consensus pattern (44 bp):
GGTCTTACTCATTATATCATGATGACATAACATCTTTCAACCAG
Found at i:37037180 original size:19 final size:19
Alignment explanation
Indices: 37037156--37037200 Score: 81
Period size: 19 Copynumber: 2.4 Consensus size: 19
37037146 AACTTAGTCC
37037156 GAGGTTCATTGGGCCGTAT
1 GAGGTTCATTGGGCCGTAT
*
37037175 GAGGTTCGTTGGGCCGTAT
1 GAGGTTCATTGGGCCGTAT
37037194 GAGGTTC
1 GAGGTTC
37037201 TTGAGCAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.13, C:0.16, G:0.40, T:0.31
Consensus pattern (19 bp):
GAGGTTCATTGGGCCGTAT
Found at i:37037449 original size:18 final size:17
Alignment explanation
Indices: 37037405--37037452 Score: 78
Period size: 19 Copynumber: 2.7 Consensus size: 17
37037395 CAGCCCGCCA
37037405 CAAAATTCTTGTGTGAC
1 CAAAATTCTTGTGTGAC
37037422 CAAAATTTCTCTGTGTGAC
1 CAAAA-TTCT-TGTGTGAC
37037441 CAAAATTCTTGT
1 CAAAATTCTTGT
37037453 TTAAAAAACT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
17 8 0.28
18 8 0.28
19 13 0.45
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.38
Consensus pattern (17 bp):
CAAAATTCTTGTGTGAC
Found at i:37039408 original size:28 final size:28
Alignment explanation
Indices: 37039366--37039572 Score: 301
Period size: 28 Copynumber: 7.4 Consensus size: 28
37039356 CTATTCAGTA
* *
37039366 ACAGT-ACAGTGTGGGCCATAGCCCAAT
1 ACAGTAACAATGTGGGCCTTAGCCCAAT
37039393 ACAGTAACAATGTGGGCCTTAGCCCAAT
1 ACAGTAACAATGTGGGCCTTAGCCCAAT
*
37039421 ATAGTAACAATGTGGGCCTTAGCCCAAT
1 ACAGTAACAATGTGGGCCTTAGCCCAAT
*
37039449 ACAGTAACAATGTAGGCCTTAGCCCAAT
1 ACAGTAACAATGTGGGCCTTAGCCCAAT
* * *
37039477 ACAGTAACAATATGGGCCTTATCCAAAT
1 ACAGTAACAATGTGGGCCTTAGCCCAAT
37039505 ACAGTAACAATGTGGGCCTTAGCCCAAT
1 ACAGTAACAATGTGGGCCTTAGCCCAAT
* *
37039533 ATAG-AATCAGTGTGGGCCTTAGCCCAAT
1 ACAGTAA-CAATGTGGGCCTTAGCCCAAT
*
37039561 ACAGTAATAATG
1 ACAGTAACAATG
37039573 CAGTGCAATA
Statistics
Matches: 160, Mismatches: 17, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
27 7 0.04
28 151 0.94
29 2 0.01
ACGTcount: A:0.34, C:0.23, G:0.21, T:0.23
Consensus pattern (28 bp):
ACAGTAACAATGTGGGCCTTAGCCCAAT
Found at i:37039748 original size:27 final size:26
Alignment explanation
Indices: 37039679--37039728 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
37039669 ACCAATATCA
37039679 CAGCAAAGCTGCCAGTAATAGTATTG
1 CAGCAAAGCTGCCAGTAATAGTATTG
37039705 CAGCAAAGCTGCCAGTAATAGTAT
1 CAGCAAAGCTGCCAGTAATAGTAT
37039729 ATGTGGCAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGCAAAGCTGCCAGTAATAGTATTG
Found at i:37039991 original size:27 final size:27
Alignment explanation
Indices: 37039961--37040102 Score: 167
Period size: 27 Copynumber: 5.3 Consensus size: 27
37039951 GGGTATAACA
** *
37039961 GTCATTTTACCCTATAAGGGTCTTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
37039988 GTCATTTTATCTTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * * * *
37040015 ATCATTCTACCTTATGGGGATATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCG
*
37040042 GTCATCTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
*
37040069 GTCAATTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
*
37040096 ATCATTT
1 GTCATTT
37040103 ATTGACATCT
Statistics
Matches: 95, Mismatches: 20, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 95 1.00
ACGTcount: A:0.18, C:0.18, G:0.22, T:0.42
Consensus pattern (27 bp):
GTCATTTTACCCTATGGGGGTATTTCG
Found at i:37041788 original size:11 final size:11
Alignment explanation
Indices: 37041772--37041808 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
37041762 AATAGAGAAT
*
37041772 GATGCTTGATG
1 GATGCTTGAGG
37041783 GATGCTTGAGG
1 GATGCTTGAGG
*
37041794 GATGATTGAGG
1 GATGCTTGAGG
37041805 GATG
1 GATG
37041809 AGAGGGTCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.22, C:0.05, G:0.43, T:0.30
Consensus pattern (11 bp):
GATGCTTGAGG
Found at i:37055119 original size:27 final size:26
Alignment explanation
Indices: 37055089--37055144 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 26
37055079 CACAGCTCTC
37055089 GTGAACACACCCATATTCACAACTCGT
1 GTGAA-ACACCCATATTCACAACTCGT
* ** *
37055116 GTG-AGCATTCATATTCACAACTTGT
1 GTGAAACACCCATATTCACAACTCGT
37055141 GTGA
1 GTGA
37055145 GGATTCATAT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
25 20 0.83
26 1 0.04
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
GTGAAACACCCATATTCACAACTCGT
Found at i:37055170 original size:25 final size:25
Alignment explanation
Indices: 37055100--37055157 Score: 98
Period size: 25 Copynumber: 2.3 Consensus size: 25
37055090 TGAACACACC
37055100 CATATTCACAACTCGTGTGAGCATT
1 CATATTCACAACTCGTGTGAGCATT
* *
37055125 CATATTCACAACTTGTGTGAGGATT
1 CATATTCACAACTCGTGTGAGCATT
37055150 CATATTCA
1 CATATTCA
37055158 TAGCTCATGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.34
Consensus pattern (25 bp):
CATATTCACAACTCGTGTGAGCATT
Found at i:37057768 original size:54 final size:54
Alignment explanation
Indices: 37057705--37057813 Score: 218
Period size: 54 Copynumber: 2.0 Consensus size: 54
37057695 GTCAAATATG
37057705 ATCACAAGGCATCACACTATCATAGGTTATTGTGACATATATATCTAGACTCAT
1 ATCACAAGGCATCACACTATCATAGGTTATTGTGACATATATATCTAGACTCAT
37057759 ATCACAAGGCATCACACTATCATAGGTTATTGTGACATATATATCTAGACTCAT
1 ATCACAAGGCATCACACTATCATAGGTTATTGTGACATATATATCTAGACTCAT
37057813 A
1 A
37057814 GGCATTATGT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.36, C:0.20, G:0.13, T:0.31
Consensus pattern (54 bp):
ATCACAAGGCATCACACTATCATAGGTTATTGTGACATATATATCTAGACTCAT
Done.