Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67659327
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 461372 characters in sequence are not A, C, G, or T
File 117 of 216
Found at i:37352218 original size:95 final size:95
Alignment explanation
Indices: 37352049--37352239 Score: 330
Period size: 95 Copynumber: 2.0 Consensus size: 95
37352039 CTGAGTTGAA
* *
37352049 TAATAAAATTATTAAATGGACTGAATTTTTCTATTTAGATAAAGATAGACCTCGTACAGATTTAG
1 TAATAAAAGTATTAAATGGACTGAACTTTTCTATTTAGATAAAGATAGACCTCGTACAGATTTAG
37352114 ATCGAGGAAAAGCTAAAGCTTCAGATTAAT
66 ATCGAGGAAAAGCTAAAGCTTCAGATTAAT
* *
37352144 TAATAAAAGTATTAAATGGACTGAACTTTTCTATTTAGATAAAGATAGACCTTGTACGGATTTAG
1 TAATAAAAGTATTAAATGGACTGAACTTTTCTATTTAGATAAAGATAGACCTCGTACAGATTTAG
37352209 ATC-AGGGAAAAGCTAAAGCTTCAGATTAAT
66 ATCGA-GGAAAAGCTAAAGCTTCAGATTAAT
37352239 T
1 T
37352240 GACTTCGTTG
Statistics
Matches: 91, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
94 1 0.01
95 90 0.99
ACGTcount: A:0.40, C:0.10, G:0.17, T:0.32
Consensus pattern (95 bp):
TAATAAAAGTATTAAATGGACTGAACTTTTCTATTTAGATAAAGATAGACCTCGTACAGATTTAG
ATCGAGGAAAAGCTAAAGCTTCAGATTAAT
Found at i:37352416 original size:20 final size:20
Alignment explanation
Indices: 37352393--37352483 Score: 76
Period size: 20 Copynumber: 4.5 Consensus size: 20
37352383 TTGTACTTCG
*
37352393 GTACCCCTGATTGCACATAC
1 GTACCCCTGATTGTACATAC
* * **
37352413 GTACCCCTGTTTGTACTTTG
1 GTACCCCTGATTGTACATAC
*
37352433 GTACCCCTGAATTGTACATAT
1 GTACCCCTG-ATTGTACATAC
* * *
37352454 GTGCCCCTGTTTGTAC-TTC
1 GTACCCCTGATTGTACATAC
37352473 GATACCCCTGA
1 G-TACCCCTGA
37352484 ATTGCACACA
Statistics
Matches: 54, Mismatches: 15, Indels: 4
0.74 0.21 0.05
Matches are distributed among these distances:
19 2 0.04
20 37 0.69
21 15 0.28
ACGTcount: A:0.19, C:0.30, G:0.18, T:0.34
Consensus pattern (20 bp):
GTACCCCTGATTGTACATAC
Found at i:37352513 original size:41 final size:41
Alignment explanation
Indices: 37352359--37352506 Score: 192
Period size: 41 Copynumber: 3.6 Consensus size: 41
37352349 AGAAAATTGA
*
37352359 TGAATTGCACATGA-ATGCCCCTATTTGTACTTCGGTACCCC
1 TGAATTGCACAT-ACATGCCCCTGTTTGTACTTCGGTACCCC
* * *
37352400 TG-ATTGCACATACGTACCCCTGTTTGTACTTTGGTACCCC
1 TGAATTGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
* ** *
37352440 TGAATTGTACATATGTGCCCCTGTTTGTACTTCGATACCCC
1 TGAATTGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
*
37352481 TGAATTGCACACACATGCCCCTGTTT
1 TGAATTGCACATACATGCCCCTGTTT
37352507 AGACTTCAAA
Statistics
Matches: 92, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 1 0.01
40 34 0.37
41 57 0.62
ACGTcount: A:0.20, C:0.29, G:0.17, T:0.34
Consensus pattern (41 bp):
TGAATTGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
Found at i:37355407 original size:22 final size:22
Alignment explanation
Indices: 37355358--37355407 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
37355348 ACTCATGAAA
* *
37355358 TATTTTTTCTCCTTTTCTTTCT
1 TATTTTCTCTCCTTTTATTTCT
*
37355380 TTTTTTCTCTCCCTTTTATTT-T
1 TATTTTCTCT-CCTTTTATTTCT
37355402 TATTTT
1 TATTTT
37355408 TTTAATGTCT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
22 14 0.61
23 9 0.39
ACGTcount: A:0.06, C:0.20, G:0.00, T:0.74
Consensus pattern (22 bp):
TATTTTCTCTCCTTTTATTTCT
Found at i:37357429 original size:27 final size:28
Alignment explanation
Indices: 37357391--37357455 Score: 89
Period size: 27 Copynumber: 2.4 Consensus size: 28
37357381 CAAAAAAGTT
*
37357391 AAAGCCTTTGTGGAAATCTATGAAA-TG
1 AAAGCCTTTGTGGAAATCTATAAAATTG
* *
37357418 AAAGCCTTTGTGGCAATTTATAAAATTG
1 AAAGCCTTTGTGGAAATCTATAAAATTG
37357446 -AAGCCTTTGT
1 AAAGCCTTTGT
37357456 AGCGATCTGT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
27 32 0.94
28 2 0.06
ACGTcount: A:0.34, C:0.12, G:0.20, T:0.34
Consensus pattern (28 bp):
AAAGCCTTTGTGGAAATCTATAAAATTG
Found at i:37357648 original size:27 final size:27
Alignment explanation
Indices: 37357625--37357853 Score: 253
Period size: 27 Copynumber: 8.5 Consensus size: 27
37357615 AGGTATGGTA
* * *
37357625 AACTCTGAAAGAATGGTACATATGACG
1 AACTCTAAAAGAATAGTACATATGGCG
* * *
37357652 AACTATAAAATAATAGTACATATGGAG
1 AACTCTAAAAGAATAGTACATATGGCG
*
37357679 AACTCTGGAAA-AATAGTACATATGGCG
1 AACTCT-AAAAGAATAGTACATATGGCG
**
37357706 AACTCTAAAAGAATAGTATGTATGGCG
1 AACTCTAAAAGAATAGTACATATGGCG
* ** *
37357733 AACTTTAAAAGAATAGTATTTATGGCA
1 AACTCTAAAAGAATAGTACATATGGCG
*
37357760 AACTCTAAAAGAATAGTACGTATGGCG
1 AACTCTAAAAGAATAGTACATATGGCG
37357787 AACTCTAAAAGAATAGTACATATGGCG
1 AACTCTAAAAGAATAGTACATATGGCG
* * * ** *
37357814 AACTCTGAAGGAATAATATGTATGGCA
1 AACTCTAAAAGAATAGTACATATGGCG
*
37357841 AACTCTAAGAGAA
1 AACTCTAAAAGAA
37357854 ATGGTTCCAT
Statistics
Matches: 171, Mismatches: 29, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
26 3 0.02
27 165 0.96
28 3 0.02
ACGTcount: A:0.44, C:0.12, G:0.20, T:0.24
Consensus pattern (27 bp):
AACTCTAAAAGAATAGTACATATGGCG
Found at i:37364824 original size:26 final size:26
Alignment explanation
Indices: 37364794--37364853 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
37364784 ACTAAATTAG
37364794 AATATAT-CTACTACATAA-ACTAACAT
1 AATATATACTACTA-ATAATA-TAACAT
* *
37364820 AATATATACTATTAATAATATAATAT
1 AATATATACTACTAATAATATAACAT
37364846 AATATATA
1 AATATATA
37364854 ATTATTACTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
26 24 0.80
27 6 0.20
ACGTcount: A:0.53, C:0.10, G:0.00, T:0.37
Consensus pattern (26 bp):
AATATATACTACTAATAATATAACAT
Found at i:37364875 original size:26 final size:26
Alignment explanation
Indices: 37364820--37364876 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
37364810 AAACTAACAT
*
37364820 AATATATACTATTAATAATATAATAT
1 AATATATACTATTAATAATATAATAA
* * *
37364846 AATATATAATTATTACTAATA-CATAA
1 AATATAT-ACTATTAATAATATAATAA
37364872 AATAT
1 AATAT
37364877 TATTAATTGT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.40
Consensus pattern (26 bp):
AATATATACTATTAATAATATAATAA
Found at i:37365413 original size:16 final size:17
Alignment explanation
Indices: 37365378--37365415 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
37365368 ATAATTAATA
37365378 TATATATGTACTACTAT
1 TATATATGTACTACTAT
* *
37365395 TATATATG-GCTATTAT
1 TATATATGTACTACTAT
37365411 TATAT
1 TATAT
37365416 TATAGATTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 11 0.58
17 8 0.42
ACGTcount: A:0.34, C:0.08, G:0.08, T:0.50
Consensus pattern (17 bp):
TATATATGTACTACTAT
Found at i:37365454 original size:247 final size:242
Alignment explanation
Indices: 37365134--37365599 Score: 612
Period size: 247 Copynumber: 1.9 Consensus size: 242
37365124 AAACAATAAC
*
37365134 ATATAATGTACTACTATTATATATAACTATTACATTATAGATTATAATAAAAGATATAGTATTAC
1 ATATAATGTACTACTATTATATATAACTATTACATTATAGATTATAATAAAAAATATAGTATTAC
* * * * * * *
37365199 ATGATATTATAATGTTTAATTATTGATGCAT-ATAT-GACTATTAATATTTTGTATACTATATGG
66 AAGATATTATAATGTTCAATCATTGATGCATAATATAAACTATTAATATATTATATACTATATGA
* ** * *
37365262 TATGATATAGCATAATATAATATTGAACAAGTGCTAACTTTCAAATGTACGAAAAGTATAGGGAC
131 TATAATATAAAATAATATAATA---AACAAGGGCTAACTTTCAAATGTACAAAAAGTATAGGGAC
37365327 TTAGAGCATATTTCAATCAATATAATAAACAATAATATATAATAATTAAT
193 TTAGAGCATATTTCAATCAATATAATAAACAATAATATATAATAATTAAT
* * *
37365377 ATATATATGTACTACTATTATATATGGCTATTATTATATTATAGATTATAATAAAAAATATAGTA
1 ATATA-ATGTACTACTATTATATAT---AACTATTACATTATAGATTATAATAAAAAATATAGTA
* * *
37365442 TTACAAGATATTATAGTGTTCAATCATTGGTGCATACATATAAACTATTAATATATTATATATTA
62 TTACAAGATATTATAATGTTCAATCATTGATGCATA-ATATAAACTATTAATATATTATATACTA
* ** *
37365507 TATGATATAATATAAAATTATATAATAAAGGAGGGCTAACTTTCAAATGTGCAAAAAGTATAGGG
126 TATGATATAATATAAAATAATATAATAAACAAGGGCTAACTTTCAAATGTACAAAAAGTATAGGG
* * *
37365572 ACTTAGAGTATATTTCAATTAGTATAAT
191 ACTTAGAGCATATTTCAATCAATATAAT
37365600 GACCGAGCCC
Statistics
Matches: 190, Mismatches: 26, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
243 5 0.03
244 19 0.10
247 121 0.64
249 4 0.02
250 41 0.22
ACGTcount: A:0.43, C:0.07, G:0.11, T:0.38
Consensus pattern (242 bp):
ATATAATGTACTACTATTATATATAACTATTACATTATAGATTATAATAAAAAATATAGTATTAC
AAGATATTATAATGTTCAATCATTGATGCATAATATAAACTATTAATATATTATATACTATATGA
TATAATATAAAATAATATAATAAACAAGGGCTAACTTTCAAATGTACAAAAAGTATAGGGACTTA
GAGCATATTTCAATCAATATAATAAACAATAATATATAATAATTAAT
Found at i:37367890 original size:43 final size:43
Alignment explanation
Indices: 37367843--37368173 Score: 405
Period size: 43 Copynumber: 7.7 Consensus size: 43
37367833 CGCTAAAAGT
* *
37367843 CATGACCTTTAGCGGCACTTTTGTCACAAATATCGCTAAAGAC
1 CATGACCTTTAGCGGCGCTTTTGTCACAAATACCGCTAAAGAC
*
37367886 CATGACCTTTAGCGACG-TTGTTGTCACAAATACCGCTAAAGAC
1 CATGACCTTTAGCGGCGCTT-TTGTCACAAATACCGCTAAAGAC
*
37367929 CATGACCTTTAGCGGCGCTGTTGTCACAAATA-CGCTAAAGAC
1 CATGACCTTTAGCGGCGCTTTTGTCACAAATACCGCTAAAGAC
** ** **
37367971 CATGACCTTTAGCGGCGCTTTTCCCACAAACGCTACTAAAGAC
1 CATGACCTTTAGCGGCGCTTTTGTCACAAATACCGCTAAAGAC
* ** **
37368014 CATGACCTTTAGCGACGCTTTTCCCACAAACGCCGCTAAAGAC
1 CATGACCTTTAGCGGCGCTTTTGTCACAAATACCGCTAAAGAC
* * * *
37368057 CATGACCTTCAACGGCGCTTTTCTCACAAATGCCGCTAAAGAC
1 CATGACCTTTAGCGGCGCTTTTGTCACAAATACCGCTAAAGAC
* ** *
37368100 CATGACCTTTAGCGGCACTTTTGTCACAAACGCCGCTAAAGAA
1 CATGACCTTTAGCGGCGCTTTTGTCACAAATACCGCTAAAGAC
* *
37368143 CATGACTTTTAGCGGCGCTTTTTATCACAAA
1 CATGACCTTTAGCGGCGC-TTTTGTCACAAA
37368174 CGTCGCTATA
Statistics
Matches: 255, Mismatches: 29, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
42 39 0.15
43 204 0.80
44 12 0.05
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.25
Consensus pattern (43 bp):
CATGACCTTTAGCGGCGCTTTTGTCACAAATACCGCTAAAGAC
Found at i:37368061 original size:128 final size:129
Alignment explanation
Indices: 37367843--37368164 Score: 434
Period size: 128 Copynumber: 2.5 Consensus size: 129
37367833 CGCTAAAAGT
**
37367843 CATGACCTTTAGCGGCACTTTTGTCACAAA-TATCGCTAAAGACCATGACCTTTAGCGACG-TTG
1 CATGACCTTTAGCGGCACTTTTGTCACAAACGCT-GCTAAAGACCATGACCTTTAGCGACGCTT-
** * * * *
37367906 TTGTCACAAATACCGCTAAAGACCATGACCTTTAGCGGCGCTGTTGTCACAAAT-ACGCTAAAGA
64 TTCCCACAAACACCGCTAAAGACCATGACCTTCAACGGCGCTGTTCTCACAAATGACGCTAAAGA
37367970 C
129 C
* ** *
37367971 CATGACCTTTAGCGGCGCTTTTCCCACAAACGCTACTAAAGACCATGACCTTTAGCGACGCTTTT
1 CATGACCTTTAGCGGCACTTTTGTCACAAACGCTGCTAAAGACCATGACCTTTAGCGACGCTTTT
* * *
37368036 CCCACAAACGCCGCTAAAGACCATGACCTTCAACGGCGCTTTTCTCACAAATGCCGCTAAAGAC
66 CCCACAAACACCGCTAAAGACCATGACCTTCAACGGCGCTGTTCTCACAAATGACGCTAAAGAC
* * * *
37368100 CATGACCTTTAGCGGCACTTTTGTCACAAACGCCGCTAAAGAACATGACTTTTAGCGGCGCTTTT
1 CATGACCTTTAGCGGCACTTTTGTCACAAACGCTGCTAAAGACCATGACCTTTAGCGACGCTTTT
37368165 TATCACAAAC
Statistics
Matches: 168, Mismatches: 23, Indels: 5
0.86 0.12 0.03
Matches are distributed among these distances:
128 98 0.58
129 70 0.42
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (129 bp):
CATGACCTTTAGCGGCACTTTTGTCACAAACGCTGCTAAAGACCATGACCTTTAGCGACGCTTTT
CCCACAAACACCGCTAAAGACCATGACCTTCAACGGCGCTGTTCTCACAAATGACGCTAAAGAC
Found at i:37368222 original size:86 final size:84
Alignment explanation
Indices: 37367843--37368230 Score: 331
Period size: 86 Copynumber: 4.5 Consensus size: 84
37367833 CGCTAAAAGT
* * * *** * *
37367843 CATGACCTTTAGCGGCACTTTTGTCACAAATATCGCTAAAGACCATGACCTTTAGCGACG-TTGT
1 CATGACCTTTAGCGACGCTTTCG-CACAAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTT-T
*
37367907 TGTCACAAATAC-CGCTAAAGAC
64 TCTCAC-AA-ACGCGCTAAAGAC
* ** *
37367929 CATGACCTTTAGCGGCGCTGTT-GTCACAAA-TACGCTAAAGACCATGACCTTTAGCGGCGCTTT
1 CATGACCTTTAGCGACGCT-TTCG-CACAAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTT
* *
37367992 TCCCACAAACGCTACTAAAGAC
64 TCTCACAAACGC-GCTAAAGAC
* * * *
37368014 CATGACCTTTAGCGACGCTTTTCCCACAAACGCCGCTAAAGACCATGACCTTCAACGGCGCTTTT
1 CATGACCTTTAGCGACGC-TTTCGCACAAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTT
*
37368079 CTCACAAATGCCGCTAAAGAC
65 CTCACAAACG-CGCTAAAGAC
* * * *
37368100 CATGACCTTTAGCGGCACTTTTGTCACAAACGCCGCTAAAGAACATGACTTTTAGCGGCGCTTTT
1 CATGACCTTTAGCGACGCTTTCG-CACAAACGCCGCTAAAGAACATGACCTTTAGCGGCGC-TTT
* * *
37368165 TATCACAAACGTCGCTATAGAA
64 TCTCACAAACG-CGCTAAAGAC
* * *
37368187 CA-AACCTTTAACGACGCTTCTCGCA-AAAGCACCGCTAAA-AACAT
1 CATGACCTTTAGCGACGCTT-TCGCACAAA-CGCCGCTAAAGAACAT
37368231 ATCATGCAAA
Statistics
Matches: 255, Mismatches: 35, Indels: 25
0.81 0.11 0.08
Matches are distributed among these distances:
83 2 0.01
84 3 0.01
85 75 0.29
86 148 0.58
87 27 0.11
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (84 bp):
CATGACCTTTAGCGACGCTTTCGCACAAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTC
TCACAAACGCGCTAAAGAC
Found at i:37368291 original size:5 final size:5
Alignment explanation
Indices: 37368281--37368306 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
37368271 TTATGATAAA
37368281 TATTT TATTT TATTT TATTT TATTT T
1 TATTT TATTT TATTT TATTT TATTT T
37368307 TAAAATTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TATTT
Found at i:37372542 original size:23 final size:23
Alignment explanation
Indices: 37372500--37372543 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
37372490 AGCTCTCCAT
*
37372500 ATATAAACAAGAAGGAAAGAAAG
1 ATATAAACAAGAAGAAAAGAAAG
37372523 ATATAAA-AAGAAGAAGAAGAA
1 ATATAAACAAGAAGAA-AAGAA
37372544 GAAGGAGGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.68, C:0.02, G:0.20, T:0.09
Consensus pattern (23 bp):
ATATAAACAAGAAGAAAAGAAAG
Found at i:37373475 original size:136 final size:129
Alignment explanation
Indices: 37373267--37373514 Score: 408
Period size: 136 Copynumber: 1.9 Consensus size: 129
37373257 CTAAAATAGA
37373267 TAGTTGTCTATTCATATGAATATGTTACTTTTTTTTATCAATGTTTTTTTTAAATCTAATATTTA
1 TAGTTGTCTATTCATATGAATATGTTACTTTTTTTTATCAATGTTTTTTTTAAATCTAATATTTA
37373332 AATATATCAAATGGTTTAGATTAAATATTTTTAAATATAAAAGCATTAATTTGAAGAACTATTT
66 AATATATCAAATGGTTTAGATTAAATATTTTTAAATATAAAAGCATTAATTTGAAGAACTATTT
37373396 TAGTTGTCTATTCATATCG-ATATGTTACTTTTTTTATTTATTTATCAATGTTTTTTTTAAATCT
1 TAGTTGTCTATTCATAT-GAATATGTTAC-----TT-TTT-TTTATCAATGTTTTTTTTAAATCT
*
37373460 AATATTTAAATATATCAAATTGTTTAGATTAAATATTTTTAAATATAAAAGCATT
58 AATATTTAAATATATCAAATGGTTTAGATTAAATATTTTTAAATATAAAAGCATT
37373515 TTTAAATATA
Statistics
Matches: 110, Mismatches: 1, Indels: 9
0.92 0.01 0.08
Matches are distributed among these distances:
129 26 0.24
130 1 0.01
134 2 0.02
135 3 0.03
136 78 0.71
ACGTcount: A:0.35, C:0.06, G:0.08, T:0.50
Consensus pattern (129 bp):
TAGTTGTCTATTCATATGAATATGTTACTTTTTTTTATCAATGTTTTTTTTAAATCTAATATTTA
AATATATCAAATGGTTTAGATTAAATATTTTTAAATATAAAAGCATTAATTTGAAGAACTATTT
Found at i:37374627 original size:27 final size:27
Alignment explanation
Indices: 37374589--37374643 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
37374579 GCACTTTTTC
*
37374589 AAAAACGCCGCTAAAGGCCCGAGCATT
1 AAAAACACCGCTAAAGGCCCGAGCATT
*
37374616 AAAAACACCGCTAAAGGCCCGATCATT
1 AAAAACACCGCTAAAGGCCCGAGCATT
37374643 A
1 A
37374644 GCGGCGCTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.40, C:0.29, G:0.18, T:0.13
Consensus pattern (27 bp):
AAAAACACCGCTAAAGGCCCGAGCATT
Found at i:37374684 original size:41 final size:41
Alignment explanation
Indices: 37374616--37374758 Score: 214
Period size: 41 Copynumber: 3.5 Consensus size: 41
37374606 CCCGAGCATT
* *
37374616 AAAAACACCGCTAAAGGCCCGATCATTAGCGGCGCTTTTCC
1 AAAAACGCCGCTAAAGGCCCGAGCATTAGCGGCGCTTTTCC
* * * *
37374657 AAAATCGTCGCTAAAGGCCCGAGCATTAGCGGCTCTTTTTC
1 AAAAACGCCGCTAAAGGCCCGAGCATTAGCGGCGCTTTTCC
37374698 AAAAACGCCGCTAAAGGCCCGAGCATTAGCGGCGCTTTTCC
1 AAAAACGCCGCTAAAGGCCCGAGCATTAGCGGCGCTTTTCC
* *
37374739 AAAAACGCAGCTAAATGCCC
1 AAAAACGCCGCTAAAGGCCC
37374759 TCAAAACTCT
Statistics
Matches: 90, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 90 1.00
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (41 bp):
AAAAACGCCGCTAAAGGCCCGAGCATTAGCGGCGCTTTTCC
Found at i:37374918 original size:40 final size:40
Alignment explanation
Indices: 37374806--37374928 Score: 110
Period size: 40 Copynumber: 3.1 Consensus size: 40
37374796 TTTGCAGCGC
* * *
37374806 TTTTTGGAAAA-CACCGCTAATGCTT-ATTTTTAGCGG-G
1 TTTTTGCAAAAGCGCCGCTAATGCTTGCTTTTTAGCGGCG
* * * * *
37374843 GTTTTCCAAAATGCGTCGCTAATGCTCGAC-CTTTAGCGGCG
1 TTTTTGCAAAA-GCGCCGCTAATGCTTG-CTTTTTAGCGGCG
* *
37374884 TTTTTGTAAAAGCGCCGCTAATGCTTGCTTTTTAGTGGCG
1 TTTTTGCAAAAGCGCCGCTAATGCTTGCTTTTTAGCGGCG
37374924 TTTTT
1 TTTTT
37374929 TATCCAAACG
Statistics
Matches: 65, Mismatches: 15, Indels: 9
0.73 0.17 0.10
Matches are distributed among these distances:
37 8 0.12
39 12 0.18
40 36 0.55
41 9 0.14
ACGTcount: A:0.20, C:0.20, G:0.23, T:0.38
Consensus pattern (40 bp):
TTTTTGCAAAAGCGCCGCTAATGCTTGCTTTTTAGCGGCG
Found at i:37381360 original size:17 final size:18
Alignment explanation
Indices: 37381335--37381372 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
37381325 ATATTCAAAT
*
37381335 AATTTAATATA-ATTATA
1 AATTAAATATATATTATA
*
37381352 AATTAAATATATATTTTA
1 AATTAAATATATATTATA
37381370 AAT
1 AAT
37381373 AACTAATAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
AATTAAATATATATTATA
Found at i:37381471 original size:34 final size:33
Alignment explanation
Indices: 37381426--37381507 Score: 101
Period size: 34 Copynumber: 2.4 Consensus size: 33
37381416 TAAAAGTTTA
* *
37381426 AATATAATAATAAATGATGTTTAAATAATTTAGT
1 AATATAATAATAAATGATATTTAAATAA-TTAAT
* * *
37381460 ATTATAATAATAATTTATATTTAAATAATTAAT
1 AATATAATAATAAATGATATTTAAATAATTAAT
37381493 AATATAATACATAAA
1 AATATAATA-ATAAA
37381508 ATATAAATTA
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
33 12 0.30
34 28 0.70
ACGTcount: A:0.54, C:0.01, G:0.04, T:0.41
Consensus pattern (33 bp):
AATATAATAATAAATGATATTTAAATAATTAAT
Found at i:37382256 original size:16 final size:15
Alignment explanation
Indices: 37382212--37382256 Score: 53
Period size: 13 Copynumber: 3.2 Consensus size: 15
37382202 ATACCTTTTT
37382212 AATTAATTA-ATATA
1 AATTAATTATATATA
37382226 AATT-ATT-TATA-A
1 AATTAATTATATATA
37382238 AATTAATTATATATGA
1 AATTAATTATATAT-A
37382254 AAT
1 AAT
37382257 ATTTCAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
12 5 0.19
13 9 0.35
14 8 0.31
16 4 0.15
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (15 bp):
AATTAATTATATATA
Found at i:37382265 original size:26 final size:26
Alignment explanation
Indices: 37382212--37382267 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
37382202 ATACCTTTTT
*
37382212 AATTAATTAATATAAATTATTTATAA
1 AATTAATTAATATAAATTATTTACAA
37382238 AATTAATTATATATGAAA-TATTT-CAA
1 AATTAATTA-ATAT-AAATTATTTACAA
37382264 AATT
1 AATT
37382268 TTAAATCTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
26 15 0.56
27 9 0.33
28 3 0.11
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (26 bp):
AATTAATTAATATAAATTATTTACAA
Found at i:37382301 original size:21 final size:22
Alignment explanation
Indices: 37382254--37382302 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
37382244 TTATATATGA
*
37382254 AATATTTCAAAATTTTAAATCT
1 AATATTTCAAAATTTTAAATAT
37382276 AATATTTCAATAA-TTT-AATAT
1 AATATTTCAA-AATTTTAAATAT
37382297 AATATT
1 AATATT
37382303 AATTTAAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
21 10 0.40
22 13 0.52
23 2 0.08
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (22 bp):
AATATTTCAAAATTTTAAATAT
Found at i:37382942 original size:20 final size:20
Alignment explanation
Indices: 37382875--37382942 Score: 52
Period size: 20 Copynumber: 3.5 Consensus size: 20
37382865 GTCCAAGACT
*
37382875 TTTTATAAT-AAAGTATTTTA
1 TTTTA-AATAAAAATATTTTA
* *
37382895 -ATTAAATAAATATAATTTT-
1 TTTTAAATAAAAAT-ATTTTA
* *
37382914 TTATCAATAAAAATATTTTA
1 TTTTAAATAAAAATATTTTA
37382934 TTTTAAATA
1 TTTTAAATA
37382943 TGATATAATA
Statistics
Matches: 35, Mismatches: 9, Indels: 8
0.67 0.17 0.15
Matches are distributed among these distances:
18 3 0.09
19 11 0.31
20 21 0.60
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.50
Consensus pattern (20 bp):
TTTTAAATAAAAATATTTTA
Found at i:37386511 original size:22 final size:22
Alignment explanation
Indices: 37386481--37386533 Score: 72
Period size: 22 Copynumber: 2.4 Consensus size: 22
37386471 CTCTCTTATA
*
37386481 TTCTTTCAATTTCCTCT-AAAT
1 TTCTCTCAATTTCCTCTGAAAT
*
37386502 TTGCTCTCAATTTCCTTTGAAAT
1 TT-CTCTCAATTTCCTCTGAAAT
37386525 TTCTCTCAA
1 TTCTCTCAA
37386534 ATCCCTATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 2 0.07
22 20 0.71
23 6 0.21
ACGTcount: A:0.23, C:0.25, G:0.04, T:0.49
Consensus pattern (22 bp):
TTCTCTCAATTTCCTCTGAAAT
Found at i:37388412 original size:18 final size:18
Alignment explanation
Indices: 37388386--37388424 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
37388376 AGGTGCGTAC
* *
37388386 CCTAGCCCTTTTATGTAT
1 CCTAACCCTTATATGTAT
*
37388404 CCTAACCCTTATATGTTT
1 CCTAACCCTTATATGTAT
37388422 CCT
1 CCT
37388425 TTTTCGAGTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.18, C:0.31, G:0.08, T:0.44
Consensus pattern (18 bp):
CCTAACCCTTATATGTAT
Found at i:37392299 original size:126 final size:126
Alignment explanation
Indices: 37392074--37392312 Score: 424
Period size: 126 Copynumber: 1.9 Consensus size: 126
37392064 ACGTAGGAGC
* *
37392074 TTTTTTTAGGAGCTACTGTAGCAAAAGCACGTCCACGTGGGAGCTTCTTTCAGTACTTCTGCTGA
1 TTTTTTCAGGAGCTACTGTAGCAAAAGCACATCCACGTGGGAGCTTCTTTCAGTACTTCTGCTGA
*
37392139 CAAAGCATCCTGCTTAAAGCGTTTTTGACACTGTTTGCTCAGAAACGTCTACTTGAAATTA
66 AAAAGCATCCTGCTTAAAGCGTTTTTGACACTGTTTGCTCAGAAACGTCTACTTGAAATTA
* * *
37392200 TTTTTTCAGGAGCTACTGTAGCAAAAGCGCATCCACGTGGGAGCTTTTTTCAGTACTTTTGCTGA
1 TTTTTTCAGGAGCTACTGTAGCAAAAGCACATCCACGTGGGAGCTTCTTTCAGTACTTCTGCTGA
37392265 AAAAGCATCCTGCTTAAAGCGTTTTTGACACTGTTTGCTCAGAAACGT
66 AAAAGCATCCTGCTTAAAGCGTTTTTGACACTGTTTGCTCAGAAACGT
37392313 TGTAACAACC
Statistics
Matches: 107, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
126 107 1.00
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33
Consensus pattern (126 bp):
TTTTTTCAGGAGCTACTGTAGCAAAAGCACATCCACGTGGGAGCTTCTTTCAGTACTTCTGCTGA
AAAAGCATCCTGCTTAAAGCGTTTTTGACACTGTTTGCTCAGAAACGTCTACTTGAAATTA
Found at i:37393106 original size:30 final size:30
Alignment explanation
Indices: 37393072--37393133 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
37393062 AGAAGGGAAA
37393072 AATGTTCAGCATGTCATAATACATAAGAAT
1 AATGTTCAGCATGTCATAATACATAAGAAT
37393102 AATGTTCAGCATGTCATAATACATAAGAAT
1 AATGTTCAGCATGTCATAATACATAAGAAT
37393132 AA
1 AA
37393134 GGGATGAAGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.45, C:0.13, G:0.13, T:0.29
Consensus pattern (30 bp):
AATGTTCAGCATGTCATAATACATAAGAAT
Found at i:37396069 original size:23 final size:23
Alignment explanation
Indices: 37396043--37396138 Score: 120
Period size: 23 Copynumber: 4.2 Consensus size: 23
37396033 AGTGTTATTG
37396043 ATCAGTGGTAGCTACGGCTACAT
1 ATCAGTGGTAGCTACGGCTACAT
* *
37396066 ATCAATGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTACGGCTACAT
* * * *
37396089 TTAAGTGGTAGCTACAGCTACGT
1 ATCAGTGGTAGCTACGGCTACAT
* *
37396112 ATCAGTGGTAGCTTCGGCTACGT
1 ATCAGTGGTAGCTACGGCTACAT
37396135 ATCA
1 ATCA
37396139 ATGTGGCACT
Statistics
Matches: 61, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 61 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (23 bp):
ATCAGTGGTAGCTACGGCTACAT
Found at i:37397339 original size:49 final size:49
Alignment explanation
Indices: 37397273--37397412 Score: 235
Period size: 49 Copynumber: 2.9 Consensus size: 49
37397263 CGTTCAGTGA
* *
37397273 TATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGATATATGT
1 TATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGATATATGT
* *
37397322 TATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATTGGTATATGT
1 TATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGATATATGT
*
37397371 TATGTGATTACGTGTAAGACCATAGTTGGACTATGGCATCGA
1 TATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGA
37397413 GAAAATAATT
Statistics
Matches: 84, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
49 84 1.00
ACGTcount: A:0.26, C:0.14, G:0.27, T:0.34
Consensus pattern (49 bp):
TATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGATATATGT
Found at i:37400289 original size:33 final size:33
Alignment explanation
Indices: 37400241--37400303 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 33
37400231 TGATTAATTT
37400241 GGAAAAAAAAGAAAAAGAA-AAGAAAGAAGAACC
1 GGAAAAAAAAGAAAAAGAAGAAGAAA-AAGAACC
37400274 GGAAAGAAAAA-AAAAAGAAGAAGAAAAAGA
1 GGAAA-AAAAAGAAAAAGAAGAAGAAAAAGA
37400304 GAGGAAAGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
33 17 0.61
34 11 0.39
ACGTcount: A:0.75, C:0.03, G:0.22, T:0.00
Consensus pattern (33 bp):
GGAAAAAAAAGAAAAAGAAGAAGAAAAAGAACC
Found at i:37402140 original size:19 final size:19
Alignment explanation
Indices: 37402116--37402152 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
37402106 AATAATTTTT
37402116 AAAATTC-AAATATTTATAA
1 AAAATTCTAAA-ATTTATAA
37402135 AAAATTCTAAAATTTATA
1 AAAATTCTAAAATTTATA
37402153 TTTTTAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 14 0.82
20 3 0.18
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (19 bp):
AAAATTCTAAAATTTATAA
Found at i:37402146 original size:27 final size:25
Alignment explanation
Indices: 37402115--37402165 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
37402105 AAATAATTTT
37402115 TAAAATTCAAATATTTATAAAAAATTC
1 TAAAATT--AATATTTATAAAAAATTC
* *
37402142 TAAAATTTATATTTTTAAAAAATT
1 TAAAATTAATATTTATAAAAAATT
37402166 TATATTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 15 0.68
27 7 0.32
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (25 bp):
TAAAATTAATATTTATAAAAAATTC
Found at i:37402165 original size:17 final size:18
Alignment explanation
Indices: 37402143--37402182 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
37402133 AAAAAATTCT
37402143 AAAATTTATA-TTTTTAA
1 AAAATTTATATTTTTTAA
37402160 AAAATTTATATTTTTTAA
1 AAAATTTATATTTTTTAA
37402178 AAAAT
1 AAAAT
37402183 CATCTAAAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 10 0.45
18 12 0.55
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
AAAATTTATATTTTTTAA
Found at i:37408009 original size:20 final size:19
Alignment explanation
Indices: 37407984--37408051 Score: 72
Period size: 20 Copynumber: 3.7 Consensus size: 19
37407974 TATCATTAGT
37407984 AATATTGGTAAAGTGTTAAA
1 AATATTGGTAAA-TGTTAAA
**
37408004 AATATTGGT-AA-G--ACC
1 AATATTGGTAAATGTTAAA
37408019 AATATTGGTAAATTGTTAAA
1 AATATTGGTAAA-TGTTAAA
37408039 AATATTGGTAAAT
1 AATATTGGTAAAT
37408052 AATTAGATTT
Statistics
Matches: 39, Mismatches: 4, Indels: 11
0.72 0.07 0.20
Matches are distributed among these distances:
15 10 0.26
16 2 0.05
17 1 0.03
18 1 0.03
19 3 0.08
20 22 0.56
ACGTcount: A:0.44, C:0.03, G:0.18, T:0.35
Consensus pattern (19 bp):
AATATTGGTAAATGTTAAA
Found at i:37423160 original size:31 final size:31
Alignment explanation
Indices: 37423122--37423190 Score: 138
Period size: 31 Copynumber: 2.2 Consensus size: 31
37423112 CAAAGGCAAA
37423122 TAAAAGCTTATCTGAGCTTTCAGCTTTCTGG
1 TAAAAGCTTATCTGAGCTTTCAGCTTTCTGG
37423153 TAAAAGCTTATCTGAGCTTTCAGCTTTCTGG
1 TAAAAGCTTATCTGAGCTTTCAGCTTTCTGG
37423184 TAAAAGC
1 TAAAAGC
37423191 GTATTTTTGG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (31 bp):
TAAAAGCTTATCTGAGCTTTCAGCTTTCTGG
Found at i:37432891 original size:19 final size:20
Alignment explanation
Indices: 37432863--37432904 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
37432853 GGCTCCTTCC
*
37432863 GATATAGTGTGTA-TGGTTG
1 GATATAGTGTGTAGTGGATG
*
37432882 GATATGGTGTGTAGTGGATG
1 GATATAGTGTGTAGTGGATG
37432902 GAT
1 GAT
37432905 GGGTTGGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.21, C:0.00, G:0.40, T:0.38
Consensus pattern (20 bp):
GATATAGTGTGTAGTGGATG
Found at i:37440198 original size:37 final size:37
Alignment explanation
Indices: 37440133--37440277 Score: 238
Period size: 37 Copynumber: 3.9 Consensus size: 37
37440123 AGCTCAGACG
* * *
37440133 AAATCTCCACATGAAGT-TTCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
37440169 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
37440206 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
37440243 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
37440278 ATATATTTCC
Statistics
Matches: 104, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
36 15 0.14
37 89 0.86
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:37440548 original size:47 final size:47
Alignment explanation
Indices: 37440486--37440972 Score: 641
Period size: 47 Copynumber: 10.1 Consensus size: 47
37440476 ACACGTTTCG
* * * **
37440486 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * *
37440533 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
37440580 CATTGGCCATCCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
37440627 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* ** * *
37440674 CATTGGCCATTCGGCCTTATCACGCATATATATATACAGGTTCACAGTCATCA
1 CATTGGCCATTCGGCCTTATCA--C----ACATACGCATGTTCACATTCATCA
***
37440727 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCA
*
37440778 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
37440825 CAGTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
***
37440872 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCA
*
37440923 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
37440970 CAT
1 CAT
37440973 AAAATCCTAA
Statistics
Matches: 394, Mismatches: 32, Indels: 28
0.87 0.07 0.06
Matches are distributed among these distances:
47 264 0.67
49 1 0.00
51 88 0.22
53 41 0.10
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.30
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:37440853 original size:198 final size:196
Alignment explanation
Indices: 37440486--37440950 Score: 748
Period size: 198 Copynumber: 2.4 Consensus size: 196
37440476 ACACGTTTCG
* *
37440486 CATTAGCCATTCGGCCTTA-C-CACATATAT-T-CATGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
* * *
37440547 CCTTAT--CTC--ATATATGCATGTTCACATTCATCACATTGGCCATCCGGCCTTATCACACATA
66 CCTTATCACACATATATATACAGGTTCACATTCATCACATTGGCCATCCGGCCTTATCACACATA
* *
37440608 CGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATC
131 CGCATGTTCACATCCATCACAGTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATC
37440673 A
196 A
* *
37440674 CATTGGCCATTCGGCCTTATCACGCATATATATATACAGGTTCACAGTCATCACATTGGCCATTC
1 CATTGGCCATTCGGCCTTATCA--CACATATATATACAGGTTCACATTCATCACATTGGCCATTC
* *
37440739 GGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACA
64 GGCCTTATCACACATATATATACAGGTTCACATTCATCACATTGGCCATCCGGCCTTATCACACA
37440804 TACGCATGTTCACATCCATCACAGTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCA
129 TACGCATGTTCACATCCATCACAGTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCA
37440869 TCA
194 TCA
*
37440872 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
37440937 CCTTATCACACATA
66 CCTTATCACACATA
37440951 CGCATGTTCA
Statistics
Matches: 253, Mismatches: 14, Indels: 12
0.91 0.05 0.04
Matches are distributed among these distances:
188 18 0.07
189 1 0.00
192 8 0.03
193 1 0.00
194 35 0.14
196 56 0.22
198 134 0.53
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.31
Consensus pattern (196 bp):
CATTGGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
CCTTATCACACATATATATACAGGTTCACATTCATCACATTGGCCATCCGGCCTTATCACACATA
CGCATGTTCACATCCATCACAGTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATC
A
Found at i:37441004 original size:145 final size:145
Alignment explanation
Indices: 37440486--37440971 Score: 605
Period size: 145 Copynumber: 3.3 Consensus size: 145
37440476 ACACGTTTCG
* * * ** * *
37440486 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCACAGT-GCCATT--GCCTT
* * * ***
37440551 ATC-TCATAT-A-TGCATGTTCACATTCATCACATTGGCCATCCGGCCTTATCACACATACGCAT
63 ATCAACATATAATTACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATATAT
37440613 ----GTTCACATTCATCA
128 ACGGGTTCACATTCATCA
* *
37440627 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCACAGT-GCCATT--GCCTT
* * *
37440692 ATCACGCATATATATATACAGGTTCACAGTCATCACATTGGCCATTCGGCCTTATCACACATATA
63 ATCA-ACATATA-AT-TACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATA
37440757 TATACGGGTTCACATTCATCA
125 TATACGGGTTCACATTCATCA
37440778 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCACAGTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCACAGT-GCCATT--GCCTT
* **
37440843 ATC-ACACAT-A-CGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATATAT
63 ATCAACATATAATTACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATATAT
37440905 ACGGGTTCACATTCATCA
128 ACGGGTTCACATTCATCA
37440923 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCACA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCACA
37440972 TAAAATCCTA
Statistics
Matches: 314, Mismatches: 21, Indels: 16
0.89 0.06 0.05
Matches are distributed among these distances:
141 63 0.20
143 5 0.02
145 116 0.37
147 46 0.15
149 4 0.01
151 80 0.25
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.30
Consensus pattern (145 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCACAGTGCCATTGCCTTATC
AACATATAATTACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATATATACG
GGTTCACATTCATCA
Found at i:37443283 original size:85 final size:85
Alignment explanation
Indices: 37443154--37443332 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
37443144 TATTTTATTG
*
37443154 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
37443219 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
37443239 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
37443304 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
37443324 CCCATGCTC
1 CCCATGCTC
37443333 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:37444840 original size:4 final size:5
Alignment explanation
Indices: 37444813--37444837 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
37444803 ATTATTTTAA
37444813 TATTT TATTT TATTT TATTT TATTT
1 TATTT TATTT TATTT TATTT TATTT
37444838 ATTCTTAATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TATTT
Found at i:37456621 original size:17 final size:18
Alignment explanation
Indices: 37456599--37456639 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
37456589 AAAAATCGAT
*
37456599 AGAAATGGTAAA-ATTTG
1 AGAAATGGGAAACATTTG
37456616 AGAAATGGGAAACATTTG
1 AGAAATGGGAAACATTTG
37456634 -GAAATG
1 AGAAATG
37456640 ATTGTGGTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 17 0.77
18 5 0.23
ACGTcount: A:0.46, C:0.02, G:0.27, T:0.24
Consensus pattern (18 bp):
AGAAATGGGAAACATTTG
Found at i:37458879 original size:28 final size:29
Alignment explanation
Indices: 37458839--37458895 Score: 107
Period size: 28 Copynumber: 2.0 Consensus size: 29
37458829 GGTTGAGACT
37458839 CATGGCATCGTATG-TATGAAAACATTCA
1 CATGGCATCGTATGATATGAAAACATTCA
37458867 CATGGCATCGTATGATATGAAAACATTCA
1 CATGGCATCGTATGATATGAAAACATTCA
37458896 TGGTGTAGCC
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
28 14 0.50
29 14 0.50
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.28
Consensus pattern (29 bp):
CATGGCATCGTATGATATGAAAACATTCA
Found at i:37461492 original size:50 final size:50
Alignment explanation
Indices: 37461438--37461715 Score: 308
Period size: 50 Copynumber: 5.5 Consensus size: 50
37461428 GATGGTTACG
37461438 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATAGGTCGCA
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATAGGTCGCA
* * ** * * * * * *
37461488 TGTGTAGTACTATGTGTAGGCTACTATGCATACCAG-ATAGTTTCGATCACG
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAAT-G-ATAGGTCGCA
*
37461539 TGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATGATAGGTCGCA
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATAGGTCGCA
* * ** * * * * *
37461589 TGTGTAGTACTATGTGCAGGCTACTATGCGTACTAG-ATAGTTTCGATCACG
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAAT-G-ATAGGTCGCA
* *
37461640 TGTGTAGTACTATGTGCAGGATACTACGTGTACTGGAATGATAGGTCGCA
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATAGGTCGCA
37461690 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
37461716 TGTAAACCGA
Statistics
Matches: 183, Mismatches: 39, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
49 4 0.02
50 99 0.54
51 76 0.42
52 4 0.02
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (50 bp):
TGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATAGGTCGCA
Found at i:37461548 original size:101 final size:101
Alignment explanation
Indices: 37461435--37461717 Score: 512
Period size: 101 Copynumber: 2.8 Consensus size: 101
37461425 AGTGATGGTT
37461435 ACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATAGGTCGCATGTGTAGTACTA
1 ACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATAGGTCGCATGTGTAGTACTA
*
37461500 TGTGTAGGCTACTATGCATACCAGATAGTTTCGATC
66 TGTGCAGGCTACTATGCATACCAGATAGTTTCGATC
*
37461536 ACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATGATAGGTCGCATGTGTAGTACTA
1 ACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATAGGTCGCATGTGTAGTACTA
* *
37461601 TGTGCAGGCTACTATGCGTACTAGATAGTTTCGATC
66 TGTGCAGGCTACTATGCATACCAGATAGTTTCGATC
* *
37461637 ACGTGTGTAGTACTATGTGCAGGATACTACGTGTACTGGAATGATAGGTCGCATGTGTAGTACTA
1 ACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATAGGTCGCATGTGTAGTACTA
37461702 TGTGCAGGCTACTATG
66 TGTGCAGGCTACTATG
37461718 TAAACCGAAC
Statistics
Matches: 175, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
101 175 1.00
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (101 bp):
ACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATAGGTCGCATGTGTAGTACTA
TGTGCAGGCTACTATGCATACCAGATAGTTTCGATC
Found at i:37461777 original size:45 final size:45
Alignment explanation
Indices: 37461721--37461806 Score: 145
Period size: 45 Copynumber: 1.9 Consensus size: 45
37461711 TACTATGTAA
* *
37461721 ACCGAACATCATTGATTAGTAAGGTGGTTGCTATGTGCTGATTCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTCCTGATTCC
*
37461766 ACCGGACATCATTGATTAATAAGGTGGTTGCTATGTCCTGA
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTCCTGA
37461807 ATCACTGAGT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (45 bp):
ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTCCTGATTCC
Found at i:37463411 original size:15 final size:15
Alignment explanation
Indices: 37463391--37463430 Score: 80
Period size: 15 Copynumber: 2.7 Consensus size: 15
37463381 AAATTGAATT
37463391 GAATCGTGAACATGA
1 GAATCGTGAACATGA
37463406 GAATCGTGAACATGA
1 GAATCGTGAACATGA
37463421 GAATCGTGAA
1 GAATCGTGAA
37463431 TTAAATGAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.40, C:0.12, G:0.28, T:0.20
Consensus pattern (15 bp):
GAATCGTGAACATGA
Found at i:37471227 original size:4 final size:4
Alignment explanation
Indices: 37471189--37471213 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
37471179 AATTTGCATG
37471189 TCTT TCTT TCTT TCTT TCTT TCTT T
1 TCTT TCTT TCTT TCTT TCTT TCTT T
37471214 ATTCCACTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TCTT
Found at i:37472695 original size:5 final size:5
Alignment explanation
Indices: 37472685--37472731 Score: 62
Period size: 5 Copynumber: 9.6 Consensus size: 5
37472675 TTTAGAAGAA
*
37472685 AATAC AATAC AATTC AGA-A- AATAC AATAC AATAC AATAC AATAC AAT
1 AATAC AATAC AATAC A-ATAC AATAC AATAC AATAC AATAC AATAC AAT
37472732 TTAGTTATTA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
3 1 0.03
4 2 0.05
5 33 0.89
6 1 0.03
ACGTcount: A:0.60, C:0.17, G:0.02, T:0.21
Consensus pattern (5 bp):
AATAC
Found at i:37475826 original size:21 final size:22
Alignment explanation
Indices: 37475788--37475828 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
37475778 TTTTTGCGTA
* *
37475788 TTAATTTTTTATTCAAATATTC
1 TTAAATTTTAATTCAAATATTC
37475810 TTAAATTTTAATT-AAATAT
1 TTAAATTTTAATTCAAATAT
37475829 ATGCATCTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.56
Consensus pattern (22 bp):
TTAAATTTTAATTCAAATATTC
Found at i:37480324 original size:5 final size:5
Alignment explanation
Indices: 37480314--37480338 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
37480304 TCCTCATCTG
37480314 CTTTT CTTTT CTTTT CTTTT CTTTT
1 CTTTT CTTTT CTTTT CTTTT CTTTT
37480339 GGATTATTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (5 bp):
CTTTT
Found at i:37481546 original size:197 final size:197
Alignment explanation
Indices: 37481219--37481977 Score: 1287
Period size: 197 Copynumber: 4.0 Consensus size: 197
37481209 AGTTTCGGAA
37481219 AGAGAAATTATCAGAGAGTATGAGTGTGC--AAA------AACCCTTCAGAAATCATGGCCTTTT
1 AGAGAAATTATCAGAGAGTATGAGTGTGCAAAAACCTTTCAACCCTTCAGAAATCATGGCCTTTT
*
37481276 ATAAGCATGGAGAGTTTTGAAATTTTGGAAAAAAAAATATCCACAAAATCTGTCATTAAATCAAT
66 ATAAGCATGGAGAGTGTTGAAATTTTGGAAAAAAAAATATCCACAAAATCTGTCATTAAATCAAT
37481341 TTGATTTAAATTTTTAATCAGATTTATTGGAATTAAATCAATAAGATAAGTTTCCATATATATAA
131 TTGATTTAAATTTTTAATCAGATTTATTGGAATTAAATCAATAAGATAAGTTTCCATATATATAA
37481406 GC
196 GC
37481408 AGAGAAATTATCAGAGAGTATGAGTGTGCAAAAACCTTTCAACCCTTCAGAAATCATGGCCTTTT
1 AGAGAAATTATCAGAGAGTATGAGTGTGCAAAAACCTTTCAACCCTTCAGAAATCATGGCCTTTT
*
37481473 ATAAGCATGGAGAGTTTTGAAATTTTGGAAAAAAAAATATCCACAAAATCTGTCATTAAATCAAT
66 ATAAGCATGGAGAGTGTTGAAATTTTGGAAAAAAAAATATCCACAAAATCTGTCATTAAATCAAT
37481538 TTGATTTAAATTTTTAATCAGATTTATTGGAATTAAATCAATAAGATAAGTTTCCATATATATAA
131 TTGATTTAAATTTTTAATCAGATTTATTGGAATTAAATCAATAAGATAAGTTTCCATATATATAA
37481603 GC
196 GC
37481605 AGAGAAATTATCAGAGAGTATGAGTGTGCAAAAACCTTTCAACCCTTCAGAAATCATGGCCTTTT
1 AGAGAAATTATCAGAGAGTATGAGTGTGCAAAAACCTTTCAACCCTTCAGAAATCATGGCCTTTT
*
37481670 ATAAGCATGGAGAGTGTTGGAATTTTGGAAAAAAAAATATCCACAAAATCTGTCATTAAATCAAT
66 ATAAGCATGGAGAGTGTTGAAATTTTGGAAAAAAAAATATCCACAAAATCTGTCATTAAATCAAT
37481735 TTGATTTAAATTTTTAATCAGATTTATTGGAATTAAATCAATAAGATAAGTTTCCATATATATAA
131 TTGATTTAAATTTTTAATCAGATTTATTGGAATTAAATCAATAAGATAAGTTTCCATATATATAA
37481800 GC
196 GC
37481802 AGAGAAATTATCAGAGAGTATGAGTGTGCAAAAACCTTTC-A------A-AAATCATGG-----T
1 AGAGAAATTATCAGAGAGTATGAGTGTGCAAAAACCTTTCAACCCTTCAGAAATCATGGCCTTTT
* * * *
37481854 ATAGGTATGGAGAGTGTTGGAATTTT-G-AAAAAAAATAT-CACAAAATCTGCCATTAAATCAAT
66 ATAAGCATGGAGAGTGTTGAAATTTTGGAAAAAAAAATATCCACAAAATCTGTCATTAAATCAAT
37481916 TTGATTTAAATTTTTAATCAGATTTATTGGAATTAAATCAATAAGATAAGTTTCCATATATA
131 TTGATTTAAATTTTTAATCAGATTTATTGGAATTAAATCAATAAGATAAGTTTCCATATATA
37481978 AGCAGATTTG
Statistics
Matches: 557, Mismatches: 5, Indels: 24
0.95 0.01 0.04
Matches are distributed among these distances:
181 85 0.15
182 11 0.02
183 1 0.00
184 25 0.04
189 38 0.07
190 1 0.00
191 3 0.01
196 1 0.00
197 392 0.70
ACGTcount: A:0.41, C:0.11, G:0.15, T:0.33
Consensus pattern (197 bp):
AGAGAAATTATCAGAGAGTATGAGTGTGCAAAAACCTTTCAACCCTTCAGAAATCATGGCCTTTT
ATAAGCATGGAGAGTGTTGAAATTTTGGAAAAAAAAATATCCACAAAATCTGTCATTAAATCAAT
TTGATTTAAATTTTTAATCAGATTTATTGGAATTAAATCAATAAGATAAGTTTCCATATATATAA
GC
Found at i:37490369 original size:6 final size:6
Alignment explanation
Indices: 37490358--37490384 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
37490348 ATGAATTTAA
37490358 TGGAAT TGGAAT TGGAAT TGGAAT TGG
1 TGGAAT TGGAAT TGGAAT TGGAAT TGG
37490385 TTTATGAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.30, C:0.00, G:0.37, T:0.33
Consensus pattern (6 bp):
TGGAAT
Found at i:37491245 original size:18 final size:18
Alignment explanation
Indices: 37491202--37491237 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
37491192 ATTCTTTAAA
*
37491202 AATATATGCATGTTTTGG
1 AATATATGCATGTATTGG
37491220 AATATATGCATGTGATTG
1 AATATATGCATGT-ATTG
37491238 AATGTATGGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 13 0.81
19 3 0.19
ACGTcount: A:0.31, C:0.06, G:0.22, T:0.42
Consensus pattern (18 bp):
AATATATGCATGTATTGG
Found at i:37492589 original size:44 final size:44
Alignment explanation
Indices: 37492525--37492618 Score: 134
Period size: 44 Copynumber: 2.1 Consensus size: 44
37492515 TTATCACTTA
* * * * *
37492525 ATTTATTTGTTTATTCATAAAGAATAATTTATTTTATACTATTT
1 ATTTTTTTGTTTATTAATAAAAAATAACTTAATTTATACTATTT
*
37492569 ATTTTTTTGTTTGTTAATAAAAAATAACTTAATTTATACTATTT
1 ATTTTTTTGTTTATTAATAAAAAATAACTTAATTTATACTATTT
37492613 ATTTTT
1 ATTTTT
37492619 AACTTTTCTA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.34, C:0.04, G:0.04, T:0.57
Consensus pattern (44 bp):
ATTTTTTTGTTTATTAATAAAAAATAACTTAATTTATACTATTT
Found at i:37495486 original size:22 final size:20
Alignment explanation
Indices: 37495443--37495492 Score: 57
Period size: 22 Copynumber: 2.5 Consensus size: 20
37495433 ATTCTAACCG
*
37495443 ATTTAAAA-CAAATAAAATT
1 ATTTAAAATCAAATAAAAAT
37495462 ATTTAAAATCAAAATTAAAAAT
1 ATTTAAAATC-AAA-TAAAAAT
*
37495484 ATTGAAAAT
1 ATTTAAAAT
37495493 TATAAAAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
19 8 0.31
20 1 0.04
21 3 0.12
22 14 0.54
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.32
Consensus pattern (20 bp):
ATTTAAAATCAAATAAAAAT
Found at i:37495491 original size:16 final size:16
Alignment explanation
Indices: 37495472--37495505 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
37495462 ATTTAAAATC
37495472 AAAATTA-AAAATATTG
1 AAAATTATAAAA-ATTG
37495488 AAAATTATAAAAATTG
1 AAAATTATAAAAATTG
37495504 AA
1 AA
37495506 TCATCTACAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (16 bp):
AAAATTATAAAAATTG
Found at i:37505619 original size:18 final size:19
Alignment explanation
Indices: 37505577--37505620 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
37505567 TCAGCACCTA
37505577 AACAGTAATCAGTAACGAT
1 AACAGTAATCAGTAACGAT
*
37505596 AGCAGTAAT-AGTAAC-AGT
1 AACAGTAATCAGTAACGA-T
37505614 AACAGTA
1 AACAGTA
37505621 TTCAACATAC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 1 0.05
18 13 0.59
19 8 0.36
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (19 bp):
AACAGTAATCAGTAACGAT
Found at i:37506940 original size:30 final size:29
Alignment explanation
Indices: 37506906--37506962 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 29
37506896 TTATCAAATA
37506906 AATAAA-ATCTTTTAATATAATAATTTAATT
1 AATAAATATCTTTTAAT-TAA-AATTTAATT
*
37506936 AATAAATATCTTTTACTTAAAATTTAA
1 AATAAATATCTTTTAATTAAAATTTAA
37506963 GAAAATATAC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
29 7 0.28
30 9 0.36
31 9 0.36
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (29 bp):
AATAAATATCTTTTAATTAAAATTTAATT
Found at i:37507086 original size:17 final size:16
Alignment explanation
Indices: 37507055--37507098 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
37507045 GATTTATTTA
37507055 ATAATATAATATCATT
1 ATAATATAATATCATT
*
37507071 ATAATTTAATTATCATT
1 ATAATATAA-TATCATT
*
37507088 AATTATATAAT
1 -ATAATATAAT
37507099 TAAAAAAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
16 8 0.35
17 8 0.35
18 7 0.30
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (16 bp):
ATAATATAATATCATT
Found at i:37508300 original size:22 final size:22
Alignment explanation
Indices: 37508272--37508314 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
37508262 ATAACCTGTA
37508272 AAAATATACAACTCACGATGTC
1 AAAATATACAACTCACGATGTC
*
37508294 AAAATATACAACTCATGATGT
1 AAAATATACAACTCACGATGT
37508315 TGGGACAATG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.47, C:0.19, G:0.09, T:0.26
Consensus pattern (22 bp):
AAAATATACAACTCACGATGTC
Found at i:37515350 original size:4 final size:4
Alignment explanation
Indices: 37515341--37515380 Score: 53
Period size: 4 Copynumber: 9.8 Consensus size: 4
37515331 TTTTTTTGGC
* *
37515341 TTAT TTAT TTGT TCAT TTAT TTAT TTAT TTATT TTAT TTA
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTA-T TTAT TTA
37515381 ATTCAAAGAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
4 27 0.87
5 4 0.13
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.72
Consensus pattern (4 bp):
TTAT
Found at i:37516103 original size:25 final size:25
Alignment explanation
Indices: 37516064--37516129 Score: 66
Period size: 25 Copynumber: 2.7 Consensus size: 25
37516054 TGTCGATTAT
*
37516064 TTAT-TTATTTA-TTTATTTTGAAC
1 TTATATTATTTATTTTATATTGAAC
* **
37516087 TTATATTATTTATTTTAAATTGTTC
1 TTATATTATTTATTTTATATTGAAC
37516112 -TATTATTATTTATTTTAT
1 TTA-TATTATTTATTTTAT
37516130 GTTTTCCATA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
23 4 0.11
24 9 0.26
25 22 0.63
ACGTcount: A:0.27, C:0.03, G:0.03, T:0.67
Consensus pattern (25 bp):
TTATATTATTTATTTTATATTGAAC
Found at i:37516143 original size:25 final size:26
Alignment explanation
Indices: 37516088--37516145 Score: 75
Period size: 25 Copynumber: 2.3 Consensus size: 26
37516078 ATTTTGAACT
*
37516088 TATATTATTTATTTTAAATTGTTCTA
1 TATATTATTTATTTTAAATTGTTCCA
**
37516114 T-TATTATTTATTTTATGTT-TTCCA
1 TATATTATTTATTTTAAATTGTTCCA
37516138 TATATTAT
1 TATATTAT
37516146 GCATTTCAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
24 5 0.18
25 22 0.79
26 1 0.04
ACGTcount: A:0.28, C:0.05, G:0.03, T:0.64
Consensus pattern (26 bp):
TATATTATTTATTTTAAATTGTTCCA
Found at i:37520253 original size:3 final size:3
Alignment explanation
Indices: 37520245--37520301 Score: 53
Period size: 3 Copynumber: 19.3 Consensus size: 3
37520235 AACTAATACA
* * * * * *
37520245 AAT AAT AAT ACT AAT AAT TAT AGT AAC ATT AAT AAT AAC AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
37520293 AAT AA- AAT A
1 AAT AAT AAT A
37520302 GTTAAGTAAT
Statistics
Matches: 41, Mismatches: 12, Indels: 2
0.75 0.22 0.04
Matches are distributed among these distances:
2 2 0.05
3 39 0.95
ACGTcount: A:0.61, C:0.05, G:0.02, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:37522263 original size:44 final size:44
Alignment explanation
Indices: 37522210--37522345 Score: 143
Period size: 44 Copynumber: 3.1 Consensus size: 44
37522200 CCTTTATTTT
*
37522210 AATCCGCTCCACTGTAATCTCAGGGAAATAGAATTACTGGTTTC
1 AATCCGCTCCACTGTAATCTCAGGGAAATAGAATTACTAGTTTC
* * * * *
37522254 AATCTGCTCCGCTGTAATCTCAGGGAGATA-AGATCCT-TTA-TTTT
1 AATCCGCTCCACTGTAATCTCAGGGAAATAGA-AT--TACTAGTTTC
* * *
37522298 ACTCCGCTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTC
1 AATCCGCTCCACTGTAATCTCAGGGAAATAGAATTACTAGTTTC
37522342 AATC
1 AATC
37522346 TGTTATATTC
Statistics
Matches: 71, Mismatches: 15, Indels: 12
0.72 0.15 0.12
Matches are distributed among these distances:
42 1 0.01
43 3 0.04
44 65 0.92
45 1 0.01
46 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.31
Consensus pattern (44 bp):
AATCCGCTCCACTGTAATCTCAGGGAAATAGAATTACTAGTTTC
Found at i:37522271 original size:219 final size:219
Alignment explanation
Indices: 37521881--37522287 Score: 654
Period size: 219 Copynumber: 1.9 Consensus size: 219
37521871 CTGCACCGTA
* *
37521881 AGGGAAATAAGATCTGTAATTCTTCGGTCTATTCCACTATAATCTCAGGGAGAGAAGACCTGATG
1 AGGGAAATAAGATCTGGAATTCTTCGATCTATTCCACTATAATCTCAGGGAGAGAAGACCTGATG
* **
37521946 CGATCTACTTTACTGTATCTTCAGAGAGATAAGATCCTTTAATTTAATCCCTTCCACTGTAATCT
66 CGATCTACTCTACTGTAAATTCAGAGAGATAAGATCCTTTAATTTAATCCCTTCCACTGTAATCT
*
37522011 CAGGGAAATAGGATTACTGGCTTCAATCTACTCCACTGTAATATCAAGGAGATAAGATTCACCAT
131 CAGGGAAATAGAATTACTGGCTTCAATCTACTCCACTGTAATATCAAGGAGATAAGATTCACCAT
37522076 TTTCGATTAGCTCCACTATTGCTT
196 TTTCGATTAGCTCCACTATTGCTT
* * * *
37522100 AGGGAGATAAGATCTGGAATTCTTCGATCTATTCCAGTGTAATCTCAGGGAGATAAGACCTGATG
1 AGGGAAATAAGATCTGGAATTCTTCGATCTATTCCACTATAATCTCAGGGAGAGAAGACCTGATG
*
37522165 CGATCTACTCTACTGTAAATTCAGAGAGATAAGATCCTTTATTTTAATCCGC-TCCACTGTAATC
66 CGATCTACTCTACTGTAAATTCAGAGAGATAAGATCCTTTAATTTAATCC-CTTCCACTGTAATC
* * * * *
37522229 TCAGGGAAATAGAATTACTGGTTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGAT
130 TCAGGGAAATAGAATTACTGGCTTCAATCTACTCCACTGTAATATCAAGGAGATAAGAT
37522288 CCTTTATTTT
Statistics
Matches: 171, Mismatches: 16, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
219 170 0.99
220 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (219 bp):
AGGGAAATAAGATCTGGAATTCTTCGATCTATTCCACTATAATCTCAGGGAGAGAAGACCTGATG
CGATCTACTCTACTGTAAATTCAGAGAGATAAGATCCTTTAATTTAATCCCTTCCACTGTAATCT
CAGGGAAATAGAATTACTGGCTTCAATCTACTCCACTGTAATATCAAGGAGATAAGATTCACCAT
TTTCGATTAGCTCCACTATTGCTT
Found at i:37522285 original size:88 final size:88
Alignment explanation
Indices: 37522177--37522347 Score: 281
Period size: 88 Copynumber: 1.9 Consensus size: 88
37522167 ATCTACTCTA
37522177 CTGTAAATTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAAATAGA
1 CTGTAAATTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAAATAGA
* *
37522242 ATTACTGGTTTCAATCTGCTCCG
66 ATTACTAGCTTCAATCTGCTCCG
* *
37522265 CTGT-AATCTCAGGGAGATAAGATCCTTTATTTTACTCCGCTCCACTGTAATCTCAGGGAAATAG
1 CTGTAAAT-TCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAAATAG
*
37522329 GATTACTAGCTTCAATCTG
65 AATTACTAGCTTCAATCTG
37522348 TTATATTCAC
Statistics
Matches: 77, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
87 3 0.04
88 74 0.96
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.33
Consensus pattern (88 bp):
CTGTAAATTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAAATAGA
ATTACTAGCTTCAATCTGCTCCG
Found at i:37534618 original size:3 final size:3
Alignment explanation
Indices: 37534610--37534662 Score: 52
Period size: 3 Copynumber: 17.7 Consensus size: 3
37534600 AACTAATACA
* * * * * *
37534610 AAT AAT AAT ACT AAT AAT TAT AGT AAC ATT AAT AAT AAT AAC AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
37534658 AAT AA
1 AAT AA
37534663 ATATAGTTAA
Statistics
Matches: 38, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.60, C:0.06, G:0.02, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:37542044 original size:15 final size:15
Alignment explanation
Indices: 37542024--37542053 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
37542014 CTAGAATTAG
*
37542024 GGGATTACAATTAAT
1 GGGATTACAACTAAT
37542039 GGGATTACAACTAAT
1 GGGATTACAACTAAT
37542054 TATAATATAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.20, T:0.30
Consensus pattern (15 bp):
GGGATTACAACTAAT
Found at i:37542703 original size:24 final size:25
Alignment explanation
Indices: 37542657--37542717 Score: 63
Period size: 25 Copynumber: 2.4 Consensus size: 25
37542647 GATTTAGATA
*
37542657 ATTTTGAATTTTGTAAGTTATAAAT-
1 ATTTT-AATTTTGTAAGTAATAAATC
*
37542682 ATTTTAATTTTG-AATGTAATAATTC
1 ATTTTAATTTTGTAA-GTAATAAATC
*
37542707 ATTTTACTTTT
1 ATTTTAATTTT
37542718 ATATGATTAC
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
23 2 0.06
24 14 0.45
25 15 0.48
ACGTcount: A:0.33, C:0.03, G:0.08, T:0.56
Consensus pattern (25 bp):
ATTTTAATTTTGTAAGTAATAAATC
Found at i:37543363 original size:7 final size:7
Alignment explanation
Indices: 37543351--37543389 Score: 69
Period size: 7 Copynumber: 5.4 Consensus size: 7
37543341 AGAGTAGTAC
37543351 ATTATAT
1 ATTATAT
37543358 ATTATAT
1 ATTATAT
37543365 ATTATAT
1 ATTATAT
37543372 ATTATAT
1 ATTATAT
37543379 ATTATTAT
1 ATTA-TAT
37543387 ATT
1 ATT
37543390 GGTTGAAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
7 25 0.81
8 6 0.19
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (7 bp):
ATTATAT
Found at i:37543843 original size:17 final size:16
Alignment explanation
Indices: 37543813--37543846 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
37543803 AGTCGTACAT
37543813 TATATATTACTTATTA
1 TATATATTACTTATTA
*
37543829 TATATCATTATTTATTA
1 TATAT-ATTACTTATTA
37543846 T
1 T
37543847 TATGCTAGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.59
Consensus pattern (16 bp):
TATATATTACTTATTA
Found at i:37544025 original size:28 final size:30
Alignment explanation
Indices: 37543989--37544044 Score: 71
Period size: 28 Copynumber: 1.9 Consensus size: 30
37543979 TAAACATATA
37543989 ATATCATGTAATACT-ATA-TTATATATTT
1 ATATCATGTAATACTAATAGTTATATATTT
* * *
37544017 ATATTATGTATTAGTAATAGTTATATAT
1 ATATCATGTAATACTAATAGTTATATAT
37544045 ATTTTATTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 12 0.52
29 3 0.13
30 8 0.35
ACGTcount: A:0.39, C:0.04, G:0.07, T:0.50
Consensus pattern (30 bp):
ATATCATGTAATACTAATAGTTATATATTT
Found at i:37544258 original size:16 final size:17
Alignment explanation
Indices: 37544237--37544269 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
37544227 ATAATTATAG
37544237 TATTAAA-AATATTTTA
1 TATTAAATAATATTTTA
37544253 TATTAAATTAATATTTT
1 TATTAAA-TAATATTTT
37544270 TAAAATTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
18 8 0.53
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
TATTAAATAATATTTTA
Found at i:37545924 original size:12 final size:13
Alignment explanation
Indices: 37545885--37545924 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
37545875 ATTTTGTGCA
37545885 TTTTTAACTTAAT
1 TTTTTAACTTAAT
* *
37545898 TTTATAACCTAAT
1 TTTTTAACTTAAT
37545911 TTTTTAA-TTAAT
1 TTTTTAACTTAAT
37545923 TT
1 TT
37545925 GCAACTTATT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
12 6 0.26
13 17 0.74
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (13 bp):
TTTTTAACTTAAT
Found at i:37552026 original size:46 final size:44
Alignment explanation
Indices: 37552001--37552302 Score: 327
Period size: 46 Copynumber: 6.5 Consensus size: 44
37551991 GATCAAGTGA
* *
37552001 CAAGTGGA-AAGTGATAAGTAATAGCTTCGGCTATACTTATCTGAT
1 CAAGT-GACAAGTGATAAGTGATAGCTT-AGCTATACTTATCTGAT
* *
37552046 CAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGAT
1 CAAGTGA-CAAGTGATAAGTGATAGCTT-AGCTATACTTATCTGAT
37552092 CAAGTGACAAAGTGATAAGTGATAGCTTCAGCTATACTTATCTGAT
1 CAAGTGAC-AAGTGATAAGTGATAGCTT-AGCTATACTTATCTGAT
* *
37552138 CAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGAT
1 CAAGTGAC-------AAGTGATAAGTGATAGCTT-AGCTATACTTATCTGAT
* *
37552190 CAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGAT
1 CAAGTGA-CAAGTGATAAGTGATAGCTT-AGCTATACTTATCTGAT
* *
37552236 CAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGAT
1 CAAGTGAC-AAGTGATAAGTGATAGC-TTAGCTATACTTATCTGAT
*
37552282 CAAGAGACAAAGTGATAAGTG
1 CAAGTGAC-AAGTGATAAGTG
37552303 GCTACACTTA
Statistics
Matches: 234, Mismatches: 11, Indels: 23
0.87 0.04 0.09
Matches are distributed among these distances:
44 2 0.01
45 5 0.02
46 182 0.78
47 2 0.01
52 43 0.18
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (44 bp):
CAAGTGACAAGTGATAAGTGATAGCTTAGCTATACTTATCTGAT
Found at i:37552062 original size:98 final size:94
Alignment explanation
Indices: 37551942--37552302 Score: 473
Period size: 98 Copynumber: 3.8 Consensus size: 94
37551932 TTTGAGTACT
* *
37551942 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGAC-A-T-
*
37552007 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
63 -AAAGTGATAAGTGATAGCTTCGGCTATACTTA
* *
37552040 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGAC--AAA
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACATAAA
*
37552103 GTGATAAGTGATAGCTTCAGCTATACTTA
66 GTGATAAGTGATAGCTTCGGCTATACTTA
* * *
37552132 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTG-
1 TCTGATCAAGTG---A-T--AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGA
37552196 -ATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
60 CATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
* * * *
37552230 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC--AAA
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACATAAA
37552293 GTGATAAGTG
66 GTGATAAGTG
37552303 GCTACACTTA
Statistics
Matches: 238, Mismatches: 15, Indels: 26
0.85 0.05 0.09
Matches are distributed among these distances:
92 94 0.39
95 2 0.01
96 1 0.00
98 141 0.59
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.30
Consensus pattern (94 bp):
TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACATAAA
GTGATAAGTGATAGCTTCGGCTATACTTA
Found at i:37552202 original size:144 final size:144
Alignment explanation
Indices: 37551942--37552291 Score: 646
Period size: 144 Copynumber: 2.4 Consensus size: 144
37551932 TTTGAGTACT
* *
37551942 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
37552007 GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGATAAAGTGATAAGTGATAGC
66 GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGATAAAGTGATAAGTGATAGC
37552072 TTCGGCTATACTTA
131 TTCGGCTATACTTA
* *
37552086 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTATACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
37552151 GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGATAAAGTGATAAGTGATAGC
66 GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGATAAAGTGATAAGTGATAGC
37552216 TTCGGCTATACTTA
131 TTCGGCTATACTTA
* *
37552230 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAA
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAA
37552292 AGTGATAAGT
Statistics
Matches: 198, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
144 198 1.00
ACGTcount: A:0.35, C:0.14, G:0.21, T:0.30
Consensus pattern (144 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGATAAAGTGATAAGTGATAGC
TTCGGCTATACTTA
Found at i:37552310 original size:37 final size:37
Alignment explanation
Indices: 37552266--37552374 Score: 177
Period size: 37 Copynumber: 3.0 Consensus size: 37
37552256 GATAGCTTTA
37552266 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
* *
37552303 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
*
37552340 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
37552375 ATCATACGTA
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
35 11 0.16
36 4 0.06
37 52 0.78
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
Found at i:37555769 original size:18 final size:18
Alignment explanation
Indices: 37555748--37555785 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
37555738 ATTTGGGTAA
37555748 AACCGAAAAAATTCGGTT
1 AACCGAAAAAATTCGGTT
**
37555766 AACCGACCAAATTCGGTT
1 AACCGAAAAAATTCGGTT
37555784 AA
1 AA
37555786 TCGGTTGGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.42, C:0.21, G:0.16, T:0.21
Consensus pattern (18 bp):
AACCGAAAAAATTCGGTT
Found at i:37556174 original size:18 final size:18
Alignment explanation
Indices: 37556153--37556193 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
37556143 GTAATTAAGG
37556153 TAATTCGATTAATTCAAT
1 TAATTCGATTAATTCAAT
* * *
37556171 TAATTTGGTTAATTCAGT
1 TAATTCGATTAATTCAAT
37556189 TAATT
1 TAATT
37556194 TTTAACCAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.34, C:0.07, G:0.10, T:0.49
Consensus pattern (18 bp):
TAATTCGATTAATTCAAT
Found at i:37559701 original size:12 final size:10
Alignment explanation
Indices: 37559676--37559713 Score: 60
Period size: 10 Copynumber: 3.9 Consensus size: 10
37559666 TTTCACTTTC
37559676 ATATATTTTT
1 ATATATTTTT
37559686 ATATATTTTT
1 ATATATTTTT
*
37559696 AAATATTTTT
1 ATATATTTTT
37559706 ATA-ATTTT
1 ATATATTTT
37559714 CTATGAGTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
9 5 0.19
10 21 0.81
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (10 bp):
ATATATTTTT
Found at i:37559738 original size:10 final size:10
Alignment explanation
Indices: 37559681--37559743 Score: 58
Period size: 10 Copynumber: 6.3 Consensus size: 10
37559671 CTTTCATATA
37559681 TTTTTAT-AT
1 TTTTTATAAT
37559690 ATTTTTA-AAT
1 -TTTTTATAAT
37559700 ATTTTTATAAT
1 -TTTTTATAAT
* * *
37559711 TTTCTATGAG
1 TTTTTATAAT
*
37559721 TTTCTATAAT
1 TTTTTATAAT
37559731 TTTTTATAAT
1 TTTTTATAAT
37559741 TTT
1 TTT
37559744 AATGATTTTT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
10 42 0.93
11 3 0.07
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.65
Consensus pattern (10 bp):
TTTTTATAAT
Found at i:37563238 original size:309 final size:304
Alignment explanation
Indices: 37562923--37563746 Score: 824
Period size: 309 Copynumber: 2.7 Consensus size: 304
37562913 ACCGGGGGAA
* * *
37562923 TAGAATTACTGGCTTCAATATACTCCACTGCAACCTCAGGGAGGTAAAATCTGCCATCTTTGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTTGATC
37562988 TGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCACTCTATTCCACTATTGCCCAGGGA
66 TGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCA-TCTATTCCACTA-TGCCCAGGGA
37563053 GATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCAGCCATCTTCGA
129 GATAGAATT-CTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCA-CCATCTTCGA
* * * ** * * * * *
37563118 TCTGCTTCGCTGT-CTATGTAGGAAGGCAAGATCTGCTATCTTTGATCTACTTCACGCCAACTTA
192 TCTGCTCCACTGTACCACAT-GG-AGGCAAAATCTGCCATCTTCGATCTACTCCACGACAACTTA
* *
37563182 AGGAGACAAGATCTGAAATCTACAATCTATTCCACTGTTGCCTAGGAAAG
255 AGGAGACAAGATCTGAAATCTACAATCTATTCCACTGCTGCCCAGGAAAG
* *
37563232 TAGAATTACTGGCTTCAATGTACTCTACTGTAACCACAGGGAGGTAAAATCTGCCATCTTCGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTTGATC
* * * * *
37563297 TGCTTCGCTGTCTA-TGC--AGGAAGGTAAGATTTGCT-ATCTTTGATCTACTT-CACGTCA-GC
66 TGC-TC-C--ACTACTGCTTAGGGAGATAAGATCTG-TAATC-TTCATCTA-TTCCAC-T-ATGC
** * * * * * * ** * * *
37563356 TTAAGGAGACA-AGA-TCTGAAATCTACAATCTATTCCACTGTTGCCT-AGGGAAGTAGAATTAC
122 CCAGGGAGATAGA-ATTCTG---GCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCAC
*** * * * * * *
37563418 TGGCTTCAATGTACTCCACTGTAACCACATGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACT
183 CATCTTCGATCTGCTCCACTGT-ACCACATGGAGGCAAAATCTGCCATCTTCGATCTACTCCACG
*** * * * *
37563483 ACTGTTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAG
247 ACAACTTAAGGAGACAAGATCTGAAATCTACAATCTATTCCACTGCTGCCCAGGAAAG
*
37563541 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACATGGAGGTAAAATCTGCCATCTTTGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTTGATC
* * * *
37563606 TGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGCCCAGGGA
66 TGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTC-ATCTATTCCACT-ATGCCCAGGGA
* *
37563671 -AGTAGAATTTCTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTTTG
129 GA-TAGAA-TTCTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAA-TCACCATCTTCG
37563735 ATCTGCTCCACT
191 ATCTGCTCCACT
37563747 ACTGCTTAGG
Statistics
Matches: 402, Mismatches: 85, Indels: 56
0.74 0.16 0.10
Matches are distributed among these distances:
305 3 0.01
306 3 0.01
307 25 0.06
308 45 0.11
309 236 0.59
310 53 0.13
311 30 0.07
312 4 0.01
313 3 0.01
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (304 bp):
TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTTGATC
TGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCATCTATTCCACTATGCCCAGGGAGA
TAGAATTCTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCACCATCTTCGATCTG
CTCCACTGTACCACATGGAGGCAAAATCTGCCATCTTCGATCTACTCCACGACAACTTAAGGAGA
CAAGATCTGAAATCTACAATCTATTCCACTGCTGCCCAGGAAAG
Found at i:37563274 original size:177 final size:176
Alignment explanation
Indices: 37563001--37563477 Score: 774
Period size: 177 Copynumber: 2.7 Consensus size: 176
37562991 TCCACTACTG
* * * * * * * *
37563001 CTTAGGGAGATAAGATCTGTAATCTTCACTCTATTCCACTATTGCCCAGGGAGATAGAATTACTG
1 CTTAAGGAGACAAGATCTGAAATCTACAATCTATTCCACTGTTGCCTAGGAAG-TAGAATTACTG
* *
37563066 GCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCAGCCATCTTCGATCTGCTTCGCTGT
65 GCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGT
*
37563131 CTATGTAGGAAGGCAAGATCTGCTATCTTTGATCTACTTCACGCCAA
130 CTATGCAGGAAGGCAAGATCTGCTATCTTTGATCTACTTCACGCCAA
37563178 CTTAAGGAGACAAGATCTGAAATCTACAATCTATTCCACTGTTGCCTAGGAAAGTAGAATTACTG
1 CTTAAGGAGACAAGATCTGAAATCTACAATCTATTCCACTGTTGCCTAGG-AAGTAGAATTACTG
*
37563243 GCTTCAATGTACTCTACTGTAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGT
65 GCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGT
* * * *
37563308 CTATGCAGGAAGGTAAGATTTGCTATCTTTGATCTACTTCACGTCAG
130 CTATGCAGGAAGGCAAGATCTGCTATCTTTGATCTACTTCACGCCAA
37563355 CTTAAGGAGACAAGATCTGAAATCTACAATCTATTCCACTGTTGCCTAGGGAAGTAGAATTACTG
1 CTTAAGGAGACAAGATCTGAAATCTACAATCTATTCCACTGTTGCCTA-GGAAGTAGAATTACTG
*
37563420 GCTTCAATGTACTCCACTGTAACCACATGGAGGTAAAATCTGCCATCTTCGATCTGCT
65 GCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCT
37563478 CCACTACTGT
Statistics
Matches: 280, Mismatches: 18, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
177 276 0.99
178 4 0.01
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (176 bp):
CTTAAGGAGACAAGATCTGAAATCTACAATCTATTCCACTGTTGCCTAGGAAGTAGAATTACTGG
CTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGTC
TATGCAGGAAGGCAAGATCTGCTATCTTTGATCTACTTCACGCCAA
Found at i:37563538 original size:44 final size:44
Alignment explanation
Indices: 37563490--37563802 Score: 126
Period size: 44 Copynumber: 7.1 Consensus size: 44
37563480 ACTACTGTTT
*
37563490 AGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCC
1 AGGGAGATAAGATCTGAAATCTTCAATCTACTCCACTGCTGCCC
* * *
37563534 AGGGA-AGT-AGAATTACTG---GCTTCAATGTACTCCACTG-TAACCAC
1 AGGGAGA-TAAG-A-T-CTGAAATCTTCAATCTACTCCACTGCT-GCC-C
* * * ** ** * * **
37563578 ATGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTT
1 AGGGAGATAAGATCTGAAATCTTCAATCTACTCCACTGCTGCCC
* * *
37563622 AGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGCCC
1 AGGGAGATAAGATCTGAAATCTTCAATCTACTCCACTGCTGCCC
* ** * * *
37563666 AGGGAAGTAGAATTTCTG---GCTTCAATGTACTCCACTG-TAACCAC
1 AGGG-AG-ATAAGATCTGAAATCTTCAATCTACTCCACTGCT-GCC-C
* * * * ** * * **
37563710 AGGGAGGTAAAAT-TCACCATCTTTGATCTGCTCCACTACTGCTT
1 AGGGAGATAAGATCTGA-AATCTTCAATCTACTCCACTGCTGCCC
* *
37563754 AGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCC
1 AGGGAGATAAGATCTGAAATCTTCAATCTACTCCACTGCTGCCC
37563798 AGGGA
1 AGGGA
37563803 AGTAGAATTA
Statistics
Matches: 183, Mismatches: 64, Indels: 44
0.63 0.22 0.15
Matches are distributed among these distances:
41 1 0.01
42 8 0.04
43 41 0.22
44 87 0.48
45 34 0.19
46 12 0.07
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (44 bp):
AGGGAGATAAGATCTGAAATCTTCAATCTACTCCACTGCTGCCC
Found at i:37563555 original size:132 final size:132
Alignment explanation
Indices: 37563354--37563869 Score: 890
Period size: 132 Copynumber: 3.9 Consensus size: 132
37563344 CTTCACGTCA
* * * *
37563354 GCTTAAGGAGACAAGATCTGAAATCTACAATCTATTCCACTGTTGCCTAGGGAAGTAGAATTACT
1 GCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACT
*
37563419 GGCTTCAATGTACTCCACTGTAACCACATGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTA
66 GGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTA
37563484 CT
131 CT
* *
37563486 GTTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACT
1 GCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACT
* *
37563551 GGCTTCAATGTACTCCACTGTAACCACATGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTA
66 GGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTA
37563616 CT
131 CT
* *
37563618 GCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGCCCAGGGAAGTAGAATTTCT
1 GCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACT
* *
37563683 GGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAAT-TCACCATCTTTGATCTGCTCCACT
66 GGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCT-GCCATCTTCGATCTGCTCCACT
37563747 ACT
130 ACT
37563750 GCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACT
1 GCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACT
*
37563815 GGCTTCAATGTACTCTACTGTAACCACAGGGAGGTAAAATCTGCCATCTTCGATC
66 GGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTCGATC
37563870 AGCTTCGCTG
Statistics
Matches: 364, Mismatches: 18, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
131 1 0.00
132 362 0.99
133 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.28
Consensus pattern (132 bp):
GCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACT
GGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTA
CT
Found at i:37564019 original size:309 final size:308
Alignment explanation
Indices: 37563589--37564183 Score: 958
Period size: 309 Copynumber: 1.9 Consensus size: 308
37563579 TGGAGGTAAA
* * * * *
37563589 ATCTGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATT
1 ATCTGCCATCTTTGATCTACTCCACGACAGCTTAAGGAGACAAGATCTGAAATCTACAATCTATT
* *
37563654 CCGCTGCTGCCCAGGGAAGTAGAATTTCTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTA
66 CCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTA
*
37563719 AAAT-TCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCT
131 AAATCT-ACCATCTTCGATCTGCT-CACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCT
*
37563783 ATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCTACTGTAACCACAGGGAG
194 ATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAG
*
37563848 GTAAAATCTGCCATCTTCGATCAGCTTCGCTGTCTATGCAGGAAGGCAAG
259 GCAAAATCTGCCATCTTCGATCAGCTTCGCTGTCTATGCAGGAAGGCAAG
* * *
37563898 ATCTGCTATCTTTGATCTACTTCACGCCAGCTTAAGGAGACAAGATCTGAAATCTACAATCTATT
1 ATCTGCCATCTTTGATCTACTCCACGACAGCTTAAGGAGACAAGATCTGAAATCTACAATCTATT
* * *
37563963 CCACTGTTGCCTAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACATGGAGGTA
66 CCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTA
* * * **
37564028 AAATCTGCCATCTTCGATCTGCTGACTACTGTTTAGGGAGATGAGATCTGAAATCTTCAATCTAT
131 AAATCTACCATCTTCGATCTGCTCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTAT
37564093 TCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGC
196 TCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGC
* *
37564158 AAAATCTGCCATCTTTGATCTGCTTC
261 AAAATCTGCCATCTTCGATCAGCTTC
37564184 ACTACTTCTT
Statistics
Matches: 262, Mismatches: 23, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
308 125 0.48
309 136 0.52
310 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (308 bp):
ATCTGCCATCTTTGATCTACTCCACGACAGCTTAAGGAGACAAGATCTGAAATCTACAATCTATT
CCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTA
AAATCTACCATCTTCGATCTGCTCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTAT
TCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGC
AAAATCTGCCATCTTCGATCAGCTTCGCTGTCTATGCAGGAAGGCAAG
Found at i:37564263 original size:132 final size:132
Alignment explanation
Indices: 37563898--37564447 Score: 809
Period size: 132 Copynumber: 4.2 Consensus size: 132
37563888 GGAAGGCAAG
* * ** ** * *
37563898 ATCTGCTATCTTTGATCTACTTCACGCCAGCTTAAGGAGACAAGATCTGAAATCTACAATCTATT
1 ATCTGCCATCTTTGATCTGCTTCACTACTTCTTAGGGAGACAAGATCTGAAATCTTCAATCTATT
* * *
37563963 CCACTGTTGCCTAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACATGGAGGTA
66 CCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTA
37564028 AA
131 AA
* * **
37564030 ATCTGCCATCTTCGATCTGC-TGACTACTGT-TTAGGGAGATGAGATCTGAAATCTTCAATCTAT
1 ATCTGCCATCTTTGATCTGCTTCACTACT-TCTTAGGGAGACAAGATCTGAAATCTTCAATCTAT
*
37564093 TCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGC
65 TCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGT
37564158 AAA
130 AAA
37564161 ATCTGCCATCTTTGATCTGCTTCACTACTTCTTAGGGAGACAAGATCTGAAATCTTCAATCTATT
1 ATCTGCCATCTTTGATCTGCTTCACTACTTCTTAGGGAGACAAGATCTGAAATCTTCAATCTATT
* * *
37564226 CCGCTGCTGTCCAGGGAAGTAGAATTTCTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTA
66 CCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTA
37564291 AA
131 AA
* * * *
37564293 AT-TCACCATCTTTGATCTGCTCCACTACTACTTAGGGAGACAAGACCTGAAATCTTCAATCTAT
1 ATCT-GCCATCTTTGATCTGCTTCACTACTTCTTAGGGAGACAAGATCTGAAATCTTCAATCTAT
* * * *
37564357 TCCACTGCTGCCCAGGAAAGTAGAATTACTGGCTTCAATGTACTCTACGGTAACCACAGGAAGGT
65 TCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGT
37564422 AAA
130 AAA
*
37564425 ATCTGCCATCTTCGATCTGCTTC
1 ATCTGCCATCTTTGATCTGCTTC
37564448 GCTGTCTATG
Statistics
Matches: 375, Mismatches: 38, Indels: 10
0.89 0.09 0.02
Matches are distributed among these distances:
131 118 0.31
132 256 0.68
133 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (132 bp):
ATCTGCCATCTTTGATCTGCTTCACTACTTCTTAGGGAGACAAGATCTGAAATCTTCAATCTATT
CCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTA
AA
Found at i:37564582 original size:264 final size:262
Alignment explanation
Indices: 37563886--37564583 Score: 581
Period size: 264 Copynumber: 2.6 Consensus size: 262
37563876 GCTGTCTATG
* * * * * *
37563886 CAGGAAGGCAAGATCTGCTATCTTTGATCTACTTCACGCCAGCTT-AAGG-AGACAAGATCTGAA
1 CAGGAAGGCAAAATCTGCCATCTTCGATCTGCTTCA--CTA-CTTCTAGGAAGACAAGATCTGAA
* * * * * * *** * *
37563949 ATCTACAATCTATTCCACTGTTGCCTAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTA
63 ATCTTCAATCTATTCCGCAGCTGTCAAGGGAAG-AGAATTAAAAGCTACAATCTACTCCACTGTA
* * * * * * * * ** ** *
37564014 ACCACATGGAGGTAAAA-TCTGCCATCTTCGATCTGCT-GACTACTGTTTAGGGAGATGAGATCT
127 ACCACAGGGAAGTAAAATTC-ACCAGCTTCAATATACTCCACTACTACTTAGGGAGACAAGACCT
* *
37564077 GAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACT
191 GAAATCTTCAATCTATTCCACTGCTGCCCAGGAAAGTAGAATTACTGGCTTCAATGTACTCCACG
37564142 GTAACCA
256 GTAACCA
* * *
37564149 CAGGGAGGCAAAATCTGCCATCTTTGATCTGCTTCACTACTTCTTAGGGAGACAAGATCTGAAAT
1 CAGGAAGGCAAAATCTGCCATCTTCGATCTGCTTCACTACTTC-TAGGAAGACAAGATCTGAAAT
* * **** * *
37564214 CTTCAATCTATTCCGCTGCTGTCCAGGGAAGTAGAATTTCTGGCTTCAATGTACTCCACTGTAAC
65 CTTCAATCTATTCCGCAGCTGTCAAGGGAAG-AGAATTAAAAGCTACAATCTACTCCACTGTAAC
* * ** * *
37564279 CACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCCACTACTACTTAGGGAGACAAGACCTGAA
129 CACAGGGAAGTAAAATTCACCAGCTTCAATATACTCCACTACTACTTAGGGAGACAAGACCTGAA
*
37564344 ATCTTCAATCTATTCCACTGCTGCCCAGGAAAGTAGAATTACTGGCTTCAATGTACTCTACGGTA
194 ATCTTCAATCTATTCCACTGCTGCCCAGGAAAGTAGAATTACTGGCTTCAATGTACTCCACGGTA
37564409 ACCA
259 ACCA
* * * **
37564413 CAGGAAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGTCTATGC-AGGAAGACAAGATCTGCT
1 CAGGAAGGCAAAATCTGCCATCTTCGATCTGCTTCACT-ACT-T-CTAGGAAGACAAGATCTGAA
** * * *
37564477 ATCTTTGATTTACTTCACGCCAGCT-T-AAGGAGACA-AG-ATCTAAAATCTACAATCTATTCCA
63 ATCTTCAATCTA-TTC-CG-CAGCTGTCAAGG-GA-AGAGAAT-TAAAAGCTACAATCTACTCCA
** * * **
37564538 CTGTTGCC-TAGGGAAGTAGAATT-ACTGGCTTCAATATACTCCACTA
122 CTGTAACCACAGGGAAGTAAAATTCACCAGCTTCAATATACTCCACTA
37564584 TAACCACATG
Statistics
Matches: 364, Mismatches: 57, Indels: 27
0.81 0.13 0.06
Matches are distributed among these distances:
260 3 0.01
261 2 0.01
262 3 0.01
263 136 0.37
264 141 0.39
265 40 0.11
266 28 0.08
267 6 0.02
268 5 0.01
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (262 bp):
CAGGAAGGCAAAATCTGCCATCTTCGATCTGCTTCACTACTTCTAGGAAGACAAGATCTGAAATC
TTCAATCTATTCCGCAGCTGTCAAGGGAAGAGAATTAAAAGCTACAATCTACTCCACTGTAACCA
CAGGGAAGTAAAATTCACCAGCTTCAATATACTCCACTACTACTTAGGGAGACAAGACCTGAAAT
CTTCAATCTATTCCACTGCTGCCCAGGAAAGTAGAATTACTGGCTTCAATGTACTCCACGGTAAC
CA
Found at i:37564643 original size:441 final size:441
Alignment explanation
Indices: 37562918--37566209 Score: 3462
Period size: 441 Copynumber: 7.5 Consensus size: 441
37562908 TGCCGACCGG
* * * *
37562918 GGGAA-TAGAATTACTGGCTTCAATATACTCCACTGCAACCTCAGGGAGGTAAAATCTGCCATCT
1 GGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTACCATCT
* * * **
37562982 TTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCACTCTATTCCACTATTGCC
66 TTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCC
* *
37563047 CAGGG-AGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCAGCCA
131 CAGGGAAG-TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCA
* *
37563111 TCTTCGATCTGCTTCGCTGTCTATGTAGGAAGGCAAGATCTGCTATCTTTGATCTACTTCACGCC
195 TCTTCGATCTGCTTCGCTGTCTATGCAGGAAGACAAGATCTGCTATCTTTGATCTACTTCACGCC
* *
37563176 AACTTAAGGAGACAAGATCTGAAATCTACAATCTATTCCACTGTTGCCTAGGAAAGTAGAATTAC
260 AGCTTAAGGAGACAAGATCTGAAATCTACAATCTATTCCACTGTTGCCTAGGGAAGTAGAATTAC
* *
37563241 TGGCTTCAATGTACTCTACTGTAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCT
325 TGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTTGATCTGC-TC-C-
* * ** * ** ** * **
37563306 GTCTA-TGC--AGGAAGGTAAGATTTGCTATCTTTGATCTACTTCACG-T-CAGCTTA
387 -ACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTA-TTC-CGCTGCTGCCCA
* * * * * * * ** * * * *
37563359 AGG-AG-ACAA-GATCTGAAATCTACAATCTATTCCACTGTTGCC-TAGGGAAGTAGAAT-TACT
1 GGGAAGTAGAATTA-CTG---GCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTACC
** ** * * ** * ** * ** * **
37563419 GGCTTCAATGTACTCCACTGTAAC--CACATGGAGGTAAAATCTGCCATCTTCGATCTGCTCCAC
62 ATCTTTGATCTGCTCCAC--T-ACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCAC
* *** * * * * *
37563482 TACTGTTTAGGG-AGATA-AGA-T-CTGAAATCTTCAATCTATTCCACTGCT-GCC-CAGGGAAG
124 TGCTGCCCAGGGAAG-TAGA-ATTACTG---GCTTCAATGTACTCCACTG-TAACCACAGGGAGG
* * *** * * * * * * * *
37563541 TAGAAT-TACTGGCTTCAATGTACTCCACTGTAACCA--CATGGAGGTA-AA-ATCTGCCATCTT
183 TAAAATCTGCCATCTTCGATCTGCTTCGCTGT--CTATGCA-GGAAG-ACAAGATCTGCTATCTT
* * ** * * * * * *
37563601 TGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGCCC
244 TGATCTACTTCACGCCAGCTTAAGGAGACAAGATCTGAAATCTACAATCTATTCCACTGTTGCCT
* *
37563666 AGGGAAGTAGAATTTCTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAAT-TCACCAT
309 AGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCT-GCCAT
*
37563730 CTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTG
373 CTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTG
37563795 CCCA
438 CCCA
* *
37563799 GGGAAGTAGAATTACTGGCTTCAATGTACTCTACTGTAACCACAGGGAGGTAAAATCTGCCATCT
1 GGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTACCATCT
* * * * * ** **
37563864 TCGATCAGCTTCGCTGTCTA-TGC--AGGAAGGCAAGATCTGCTATCTTTGATCTACTT-CAC-G
66 TTGATCTGC-TC-C--ACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTA-TTCCACTG
* ** * * * * * * * ** * * *
37563924 CCAGCTTAAGG-AG-ACAA-GATCTGAAATCTACAATCTATTCCACTGTTGCC-TAGGGAAGTAG
126 -CTGCCCAGGGAAGTAGAATTA-CTG---GCTTCAATGTACTCCACTGTAACCACAGGGAGGTAA
* *** * * * * * * * * *
37563985 AAT-TACTGGCTTCAATGTACTCCACTGTAACCA--CATGGAGGTA-AA-ATCTGCCATCTTCGA
186 AATCTGCCATCTTCGATCTGCTTCGCTGT--CTATGCA-GGAAG-ACAAGATCTGCTATCTTTGA
* * ** * * * ** * * *
37564045 TCTGC-TGACTACTGTTTAGGGAGATGAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGG
247 TCTACTTCACGCCAGCTTAAGGAGACAAGATCTGAAATCTACAATCTATTCCACTGTTGCCTAGG
*
37564109 GAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGCAAAATCTGCCATCTTT
312 GAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTT
* * *
37564174 GATCTGCTTCACTACTTCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGTCCA
377 GATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGCCCA
*
37564239 GGGAAGTAGAATTTCTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAAT-TCACCATC
1 GGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCT-ACCATC
* *
37564303 TTTGATCTGCTCCACTACTACTTAGGGAGACAAGACCTGAAATCTTCAATCTATTCCACTGCTGC
65 TTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGC
* * * *
37564368 CCAGGAAAGTAGAATTACTGGCTTCAATGTACTCTACGGTAACCACAGGAAGGTAAAATCTGCCA
130 CCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCA
*
37564433 TCTTCGATCTGCTTCGCTGTCTATGCAGGAAGACAAGATCTGCTATCTTTGATTTACTTCACGCC
195 TCTTCGATCTGCTTCGCTGTCTATGCAGGAAGACAAGATCTGCTATCTTTGATCTACTTCACGCC
*
37564498 AGCTTAAGGAGACAAGATCTAAAATCTACAATCTATTCCACTGTTGCCTAGGGAAGTAGAATTAC
260 AGCTTAAGGAGACAAGATCTGAAATCTACAATCTATTCCACTGTTGCCTAGGGAAGTAGAATTAC
* * *
37564563 TGGCTTCAATATACTCCACTATAACCACATGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACT
325 TGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACT
37564628 ACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGCCCA
390 ACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGCCCA
*
37564680 GGGAAGTAGAATTTCTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAAT-TCACCATC
1 GGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCT-ACCATC
*
37564744 TTTGACCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGC
65 TTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGC
*
37564809 CCAGGGAAGTAGAATTACTGGCTTCAATGTACTCTACTGTAACCACAGGGAGGTAAAATCTGCCA
130 CCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCA
*
37564874 TCTTCGATCTGCTTCGCTGTCTATGCAGGAAGGCAAGATCTGCTATCTTTGATCTACTTCACGCC
195 TCTTCGATCTGCTTCGCTGTCTATGCAGGAAGACAAGATCTGCTATCTTTGATCTACTTCACGCC
*
37564939 AGCTTAAGGAGACAAGATTTGAAATCTACAATCTATTCCACTGTTGCCTAGGGAAGTAGAATTAC
260 AGCTTAAGGAGACAAGATCTGAAATCTACAATCTATTCCACTGTTGCCTAGGGAAGTAGAATTAC
*
37565004 TGGCTTCAATGTACTCCACTGTAACCACATGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACT
325 TGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACT
37565069 ACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGCCCA
390 ACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGCCCA
37565121 GGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAAT-TCACCATC
1 GGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCT-ACCATC
*
37565185 TTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTACTGC
65 TTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGC
* *
37565250 CTAGGGAAGTAGAATTACTGGCTTCAATGTACTCTACTGTAACCACAGGGAGGTAAAATCTGCCA
130 CCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCA
*
37565315 TCTTCGATCTGCTTCGCTGTCTATGCAGGAAGGCAAGATCTGCTATCTTTGATCTACTTCACGCC
195 TCTTCGATCTGCTTCGCTGTCTATGCAGGAAGACAAGATCTGCTATCTTTGATCTACTTCACGCC
37565380 AGCTTAAGGAGACAAGATCTGAAATCTACAATCTATTCCACTGTTGCCTAGGGAAGTAGAATTAC
260 AGCTTAAGGAGACAAGATCTGAAATCTACAATCTATTCCACTGTTGCCTAGGGAAGTAGAATTAC
* * * * *
37565445 TAGCTTCAATATACTCCACTGTAACCACATGGAGGTAAAATCTGTCATCTTCGATCTGCTCCACT
325 TGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACT
* ** *
37565510 ACTGTTTAGGGAGATGAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCA
390 ACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGCCCA
* *
37565562 GGGAAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCTGCCATCT
1 GGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTACCATCT
* * *
37565627 TTGATCTGCTTCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGTC
66 TTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCC
* * *
37565692 CAGGGAAGTAGAATTTCTGGCTTCAATTTACTCCACTGTAACCACAGGGAGGTAAAAT-TCACCA
131 CAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCT-GCCA
* * * ** **
37565756 TCTTTGATCTGC-TC-C--ACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTA-TTCCA
195 TCTTCGATCTGCTTCGCTGTCTA-TGC--AGGAAGACAAGATCTGCTATCTTTGATCTACTT-CA
* ** * * * * * * * * ** *
37565816 CTG-CTGCCCAGGGAAGTAGAA-TTACTG---GCTTCAATGTACTCTACTGTAACCACAGGG-AG
256 C-GCCAGCTTAAGG-AG-ACAAGAT-CTGAAATCTACAATCTATTCCACTGTTGCC-TAGGGAAG
* * * *** * * * * * * * * * *
37565875 GAAAATCTGCCATCTTCGATCTGCTTCGCTGT--CTATGCAGGAAGGCAAGATCTGCTATCTTTG
316 TAGAAT-TACTGGCTTCAATGTACTCCACTGTAACCA--CAGGGAGGTAAAATCTGCCATCTTTG
* * ** * * * * * * *
37565938 ATCTACTTCACGCCAGCTTAAGGAGACAAGATCTGAAATCTACAATCTTTTCCACTGTTGCCTA
378 ATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGCCCA
* *
37566002 GGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACATGGAGGTAAAATCTGCCATCT
1 GGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTACCATCT
* * * **
37566067 TCGATCTGCT-GACTACTGTTTAGGGAGATGAGATCTGAAATCTTCAATCTATTCCACTGCTGCC
66 TTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCC
* *
37566131 CAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGCAAAATCTTCCAT
131 CAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCAT
*
37566196 CTTTGATCTGCTTC
196 CTTCGATCTGCTTC
37566210 ACTACTGCTT
Statistics
Matches: 2472, Mismatches: 306, Indels: 147
0.85 0.10 0.05
Matches are distributed among these distances:
436 3 0.00
437 8 0.00
438 31 0.01
439 219 0.09
440 534 0.22
441 1542 0.62
442 89 0.04
443 42 0.02
444 3 0.00
445 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (441 bp):
GGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTACCATCT
TTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCC
CAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCAT
CTTCGATCTGCTTCGCTGTCTATGCAGGAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCA
GCTTAAGGAGACAAGATCTGAAATCTACAATCTATTCCACTGTTGCCTAGGGAAGTAGAATTACT
GGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTA
CTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGCCCA
Found at i:37564710 original size:132 final size:132
Alignment explanation
Indices: 37564499--37564886 Score: 634
Period size: 132 Copynumber: 2.9 Consensus size: 132
37564489 CTTCACGCCA
* * * * *
37564499 GCTTAAGGAGACAAGATCTAAAATCTACAATCTATTCCACTGTTGCCTAGGGAAGTAGAATTACT
1 GCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACT
* * *
37564564 GGCTTCAATATACTCCACTATAACCACATGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTA
66 GGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTA
37564629 CT
131 CT
* *
37564631 GCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGCCCAGGGAAGTAGAATTTCT
1 GCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACT
* *
37564696 GGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAAT-TCACCATCTTTGACCTGCTCCACT
66 GGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCT-GCCATCTTTGATCTGCTCCACT
37564760 ACT
130 ACT
37564763 GCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACT
1 GCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACT
* *
37564828 GGCTTCAATGTACTCTACTGTAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCT
66 GGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTTGATCTGCT
37564887 TCGCTGTCTA
Statistics
Matches: 236, Mismatches: 18, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
131 1 0.00
132 234 0.99
133 1 0.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (132 bp):
GCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACT
GGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTA
CT
Found at i:37564745 original size:309 final size:309
Alignment explanation
Indices: 37564191--37564754 Score: 891
Period size: 309 Copynumber: 1.8 Consensus size: 309
37564181 TTCACTACTT
* * * * *
37564191 CTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGTCCAGGGAAGTAGAATTTCTG
1 CTTAAGGAGACAAGATCTAAAATCTACAATCTATTCCACTGCTGTCCAGGGAAGTAGAATTACTG
* *
37564256 GCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCCACTAC
66 GCTTCAATATACTCCACTATAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCCACTAC
37564321 TACTTAGGGAGACAAGACCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGAAAGTAGAATTAC
131 TACTTAGGGAGACAAGACCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGAAAGTAGAATTAC
* * *
37564386 TGGCTTCAATGTACTCTACGGTAACCACAGGAAGGTAAAATCTGCCATCTTCGATCTGCTTCGCT
196 TGGCTTCAATGTACTCCACGGTAACCACAGGAAGGTAAAATCTACCATCTTCGACCTGCTTCGCT
37564451 GTCTATGCAGGAAGACAAGATCTGCTATCTTTGATTTACTTCACGCCAG
261 GTCTATGCAGGAAGACAAGATCTGCTATCTTTGATTTACTTCACGCCAG
*
37564500 CTTAAGGAGACAAGATCTAAAATCTACAATCTATTCCACTGTTG-CCTAGGGAAGTAGAATTACT
1 CTTAAGGAGACAAGATCTAAAATCTACAATCTATTCCACTGCTGTCC-AGGGAAGTAGAATTACT
* *
37564564 GGCTTCAATATACTCCACTATAACCACATGGAGGTAAAA-TCTGCCATCTTTGATCTGCTCCACT
65 GGCTTCAATATACTCCACTATAACCACAGGGAGGTAAAATTC-ACCATCTTTGATCTGCTCCACT
* * * *
37564628 ACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGCCCAGGGAAGTAGAATT
129 ACTACTTAGGGAGACAAGACCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGAAAGTAGAATT
* * * *
37564693 TCTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAAT-TCACCATCTTTGACCTGCT
194 ACTGGCTTCAATGTACTCCACGGTAACCACAGGAAGGTAAAATCT-ACCATCTTCGACCTGCT
37564755 CCACTACTGC
Statistics
Matches: 231, Mismatches: 21, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
308 5 0.02
309 226 0.98
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (309 bp):
CTTAAGGAGACAAGATCTAAAATCTACAATCTATTCCACTGCTGTCCAGGGAAGTAGAATTACTG
GCTTCAATATACTCCACTATAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCCACTAC
TACTTAGGGAGACAAGACCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGAAAGTAGAATTAC
TGGCTTCAATGTACTCCACGGTAACCACAGGAAGGTAAAATCTACCATCTTCGACCTGCTTCGCT
GTCTATGCAGGAAGACAAGATCTGCTATCTTTGATTTACTTCACGCCAG
Found at i:37564924 original size:309 final size:309
Alignment explanation
Indices: 37564602--37565195 Score: 976
Period size: 309 Copynumber: 1.9 Consensus size: 309
37564592 TGGAGGTAAA
* * * * *
37564602 ATCTGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATT
1 ATCTGCCATCTTTGATCTACTCCACGACAGCTTAAGGAGACAAGATCTGAAATCTACAATCTATT
* *
37564667 CCGCTGCTGCCCAGGGAAGTAGAATTTCTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTA
66 CCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTA
37564732 AAAT-TCACCATCTTTGACCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCT
131 AAATCT-ACCATCTTTGACCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCT
*
37564796 ATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCTACTGTAACCACAGGGAG
195 ATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAG
*
37564861 GTAAAA-TCTGCCATCTTCGATCTGCTTCGCTGTCTATGCAGGAAGGCAAG
260 GTAAAATTC-ACCATCTTCGATCTGCTTCGCTGTCTATGCAGGAAGGCAAG
* * * *
37564911 ATCTGCTATCTTTGATCTACTTCACGCCAGCTTAAGGAGACAAGATTTGAAATCTACAATCTATT
1 ATCTGCCATCTTTGATCTACTCCACGACAGCTTAAGGAGACAAGATCTGAAATCTACAATCTATT
* * *
37564976 CCACTGTTGCCTAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACATGGAGGTA
66 CCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTA
* *
37565041 AAATCTGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTA
131 AAATCTACCATCTTTGACCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTA
*
37565106 TTCCGCTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGG
196 TTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGG
*
37565171 TAAAATTCACCATCTTTGATCTGCT
261 TAAAATTCACCATCTTCGATCTGCT
37565196 CCACTACTGC
Statistics
Matches: 263, Mismatches: 20, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
309 260 0.99
310 3 0.01
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.29
Consensus pattern (309 bp):
ATCTGCCATCTTTGATCTACTCCACGACAGCTTAAGGAGACAAGATCTGAAATCTACAATCTATT
CCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTA
AAATCTACCATCTTTGACCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTA
TTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGG
TAAAATTCACCATCTTCGATCTGCTTCGCTGTCTATGCAGGAAGGCAAG
Found at i:37565056 original size:573 final size:568
Alignment explanation
Indices: 37563313--37567659 Score: 4814
Period size: 573 Copynumber: 7.6 Consensus size: 568
37563303 GCTGTCTATG
* * * * * *
37563313 CAGGAAGGTAAGATTTGCTATCTTTGATCTACTTCACGT-CAGCTTAAGGAGACAAGATCTGAAA
1 CAGG-AGGTAAAATCTGCCATCTTTGATCTGCTTCAC-TACTGCTTAGGGAGACAAGATCTGAAA
* * * *
37563377 TCTACAATCTATTCCACTGTTGCCTAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAA
64 TCTTCAATCTATTCCGCTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAA
* * * * *
37563442 CCACATGGAGGTAAAA-TCTGCCATCTTCGATCTGCTCCACTACTGTTTAGGGAGATAAGATCTG
129 CCACAGGGAGGTAAAATTC-ACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTG
37563506 AAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTG
193 AAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTG
* * *
37563571 TAACCACATGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATC
258 TAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTACTGCTTAGGAAGACAAGATC
* * * ** * *
37563636 TGAAATCTTCAATCTA-TTC-CGCTGCTGCCCAGGGAAGTAGAATTTCTG-GCTTCAATGTACTC
323 TGAAATCTTCAATCTACTTCACGC--CAGCCCAAGG-AG-ACAAGATCTGAGCTACAATCTACTC
* * ** * * ** * *
37563698 CACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCCAC--TACTGCTTAGGGAGA
384 CACTGTAACC-CAGGGAAGTAAAATT-ACCAGCTTCAATATACTCCACTGTAC--CACATGGAGG
* * ** * * * *** *
37563761 CAAGATCTGAAATCTTCAATCT-ATTCCACTGCTGCCCAGGGA-A-GTAGAATTACTG---GCTT
445 TAAAATCTGCTATCTTCGATCTGCTT-CACTACTGTTTAGGGAGATG-AG-A-T-CTGAAATCTT
* * * * * * * *** * * * *
37563820 CAATGTACTCTACTG-TAACCACAGGGAGGTAAAATCTGCCATCTTCGAT-CAGCTTCGCTGT--
505 CAATCTATTCCACTGCT-GCC-CAGGGAAGTAGAAT-TACTGGCTTCAATGTA-CTCCACTGTAA
*
37563881 CTA
566 CCA
* * * * ** * *
37563884 TGCAGGAAGGCAAGATCTGCTATCTTTGATCTACTTCACGCCAGCTTAAGGAGACAAGATCTGAA
1 --CAGG-AGGTAAAATCTGCCATCTTTGATCTGCTTCACTACTGCTTAGGGAGACAAGATCTGAA
* * * *
37563949 ATCTACAATCTATTCCACTGTTGCCTAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTA
63 ATCTTCAATCTATTCCGCTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTA
* * * * * **
37564014 ACCACATGGAGGTAAAA-TCTGCCATCTTCGATCTGCT-GACTACTGTTTAGGGAGATGAGATCT
128 ACCACAGGGAGGTAAAATTC-ACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCT
37564077 GAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACT
192 GAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACT
* * * * *
37564142 GTAACCACAGGGAGGCAAAATCTGCCATCTTTGATCTGCTTCACTACTTCTTAGGGAGACAAGAT
257 GTAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTACTGCTTAGGAAGACAAGAT
* * * * ** * *
37564207 CTGAAATCTTCAATCTA-TTC-CGCTGCTGTCCAGGGAAGTAGAATTTCTG-GCTTCAATGTACT
322 CTGAAATCTTCAATCTACTTCACGC--CAGCCCAAGG-AG-ACAAGATCTGAGCTACAATCTACT
* * ** * * * *
37564269 CCACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCCAC--TACTACTTAGGGAG
383 CCACTGTAACC-CAGGGAAGTAAAATT-ACCAGCTTCAATATACTCCACTGTACCAC--ATGGAG
** * * ** * * * *** * *
37564332 ACAAGACCTGAAATCTTCAATCT-ATTCCACTGCTGCCCA-GGA-AAGTAGAATTACTG---GCT
444 GTAAAATCTGCTATCTTCGATCTGCTT-CACTACTGTTTAGGGAGATG-AG-A-T-CTGAAATCT
* * * * * * * *** * * * * *
37564391 TCAATGTACTCTAC-GGTAACCACA-GGAAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGT-
504 TCAATCTATTCCACTGCT-GCC-CAGGGAA-GTAGAAT-TACTGGCTTCAATGTACTCCACTGTA
*
37564453 -CTA
565 ACCA
* * * * ** * * *
37564456 TGCAGGAAG-ACAAGATCTGCTATCTTTGATTTACTTCACGCCAGCTTAAGGAGACAAGATCTAA
1 --CAGGAGGTA-AA-ATCTGCCATCTTTGATCTGCTTCACTACTGCTTAGGGAGACAAGATCTGA
* * * * * *
37564520 AATCTACAATCTATTCCACTGTTGCCTAGGGAAGTAGAATTACTGGCTTCAATATACTCCACTAT
62 AATCTTCAATCTATTCCGCTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGT
* *
37564585 AACCACATGGAGGTAAAA-TCTGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATC
127 AACCACAGGGAGGTAAAATTC-ACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATC
* *
37564649 TGAAATCTTCAATCTATTCCGCTGCTGCCCAGGGAAGTAGAATTTCTGGCTTCAATGTACTCCAC
191 TGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCAC
* * * *
37564714 TGTAACCACAGGGAGGTAAAAT-TCACCATCTTTGACCTGCTCCACTACTGCTTAGGGAGACAAG
256 TGTAACCACAGGGAGGTAAAATCT-GCCATCTTCGATCTGCTCCACTACTGCTTAGGAAGACAAG
* * * * * *
37564778 ATCTGAAATCTTCAATCTA-TTCCACTG-CTGCCCAGGGAAGTAGAA-TTACTG-GCTTCAATGT
320 ATCTGAAATCTTCAATCTACTT-CAC-GCCAGCCCAAGG-AG-ACAAGAT-CTGAGCTACAATCT
* * * * * * * * * *
37564839 ACTCTACTGTAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGT-CTATGCA-G
380 ACTCCACTGTAACC-CAGGGAAGTAAAAT-TACCAGCTTCAATATACTCCACTGTACCA--CATG
* * * * ** * * * ** * *
37564902 GAAGGCAAGATCTGCTATCTTTGATCTACTTCACGCCAGCTTAAGGAGACAAGATTTGAAATCTA
441 G-AGGTAAAATCTGCTATCTTCGATCTGCTTCACTACTGTTTAGGGAGATGAGATCTGAAATCTT
* *
37564967 CAATCTATTCCACTGTTGCCTAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCA
505 CAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCA
*
37565031 CATGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAAT
1 CA-GGAGGTAAAATCTGCCATCTTTGATCTGCTTCACTACTGCTTAGGGAGACAAGATCTGAAAT
37565096 CTTCAATCTATTCCGCTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
65 CTTCAATCTATTCCGCTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
37565161 CACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAA
130 CACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAA
* * *
37565226 ATCTTCAATCTATTCCACTACTGCCTAGGGAAGTAGAATTACTGGCTTCAATGTACTCTACTGTA
195 ATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTA
* *
37565291 ACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGTCTA-TGC--AGGAAGGCAAGA
260 ACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGC-TC-C--ACTACTGCTTAGGAAGACAAGA
** ** ** * *
37565353 TCTGCTATCTTTGATCTACTTCACGCCAGCTTAAGGAGACAAGATCTGAAATCTACAATCTATTC
321 TCTGAAATCTTCAATCTACTTCACGCCAGCCCAAGGAGACAAGATCTG--AGCTACAATCTACTC
** * * *
37565418 CACTGTTGCCTAGGGAAGTAGAATTACTAGCTTCAATATACTCCACTGTAACCACATGGAGGTAA
384 CACTGTAACCCAGGGAAGTAAAATTACCAGCTTCAATATACTCCACTGT-ACCACATGGAGGTAA
*
37565483 AATCTG-TCATCTTCGATCTGCTCCACTACTGTTTAGGGAGATGAGATCTGAAATCTTCAATCTA
448 AATCTGCT-ATCTTCGATCTGCTTCACTACTGTTTAGGGAGATGAGATCTGAAATCTTCAATCTA
*
37565547 TTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCA
512 TTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCA
37565604 CAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCACTACTGCTTAGGGAGACAAGATCTGAAAT
1 CA-GGAGGTAAAATCTGCCATCTTTGATCTGCTTCACTACTGCTTAGGGAGACAAGATCTGAAAT
* * *
37565669 CTTCAATCTATTCCGCTGCTGTCCAGGGAAGTAGAATTTCTGGCTTCAATTTACTCCACTGTAAC
65 CTTCAATCTATTCCGCTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
37565734 CACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAA
130 CACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAA
*
37565799 ATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCTACTGTA
195 ATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTA
* *
37565864 ACCACAGGGAGG-AAAATCTGCCATCTTCGATCTGCTTCGCTGTCTA-TGC--AGGAAGGCAAGA
260 ACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGC-TC-C--ACTACTGCTTAGGAAGACAAGA
** ** ** * **
37565925 TCTGCTATCTTTGATCTACTTCACGCCAGCTTAAGGAGACAAGATCTGAAATCTACAATCTTTTC
321 TCTGAAATCTTCAATCTACTTCACGCCAGCCCAAGGAGACAAGATCTG--AGCTACAATCTACTC
** * * ** *
37565990 CACTGTTGCCTAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACATGGAGGTAA
384 CACTGTAACCCAGGGAAGTAAAATTACCAGCTTCAATATACTCCACTGT-ACCACATGGAGGTAA
* *
37566055 AATCTGCCATCTTCGATCTGC-TGACTACTGTTTAGGGAGATGAGATCTGAAATCTTCAATCTAT
448 AATCTGCTATCTTCGATCTGCTTCACTACTGTTTAGGGAGATGAGATCTGAAATCTTCAATCTAT
37566119 TCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCA
513 TCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCA
* *
37566175 CAGGGAGGCAAAATCTTCCATCTTTGATCTGCTTCACTACTGCTTAGGGAGACAAGATCTGAAAT
1 CA-GGAGGTAAAATCTGCCATCTTTGATCTGCTTCACTACTGCTTAGGGAGACAAGATCTGAAAT
37566240 CTTCAATCTATTCCGCTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
65 CTTCAATCTATTCCGCTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
37566305 CACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAA
130 CACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAA
* * *
37566370 ATCTTCAATCTATTCCACTACTGCCTAGGGAAGTAGAATTACTGGCTTCAATGTACTCTACTGTA
195 ATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTA
* * * * *
37566435 ACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGTCT-ATGTAGGAAGGCAAGATC
260 ACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACT-ACTGCT-TAGGAAGACAAGATC
** ** ** * *
37566499 TGCTATCTTTGATCTACTTCACGCCAGCTTAAGGAGACAAGATCTGAAATCTACAATCTATTCCA
323 TGAAATCTTCAATCTACTTCACGCCAGCCCAAGGAGACAAGATCTG--AGCTACAATCTACTCCA
** * * *
37566564 CTGTTGCCTAGGGAAGTAGAATTACTAGCTTCAATATACTCCACTGTAACCACATGGAGGTAAAA
386 CTGTAACCCAGGGAAGTAAAATTACCAGCTTCAATATACTCCACTGT-ACCACATGGAGGTAAAA
*
37566629 TCTG-TCATCTTCGATCTGCTCCACTACTGTTTAGGGAGATGAGATCTGAAATCTTCAATCTATT
450 TCTGCT-ATCTTCGATCTGCTTCACTACTGTTTAGGGAGATGAGATCTGAAATCTTCAATCTATT
*
37566693 CCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCA
514 CCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCA
*
37566748 CAGGGAGGTAAAATCTGCCATTTTTGATCTGCTTCACTACTGCTTAGGGAGACAAGATCTGAAAT
1 CA-GGAGGTAAAATCTGCCATCTTTGATCTGCTTCACTACTGCTTAGGGAGACAAGATCTGAAAT
* *
37566813 CTTCAATCTATTCCGCTGCTGTCCAGGGAAGTAGAATTTCTGGCTTCAATGTACTCCACTGTAAC
65 CTTCAATCTATTCCGCTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
* *
37566878 CACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCCACTACTACTTAGGGAGACAAGACCTGAA
130 CACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAA
* * *
37566943 ATCTTCAATCTATTCCACTGCTGCCTAGGGAAGTAGAATTACTGGCTTCAATGTACTCTACGGTA
195 ATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTA
*
37567008 ACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGTCTA-TGC--AGGAAGACAAGA
260 ACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGC-TC-C--ACTACTGCTTAGGAAGACAAGA
** ** * ** * *
37567070 TCTGCTATCTTTGATTTACTTCACGCCAGCTTAAGGAGACAAGATCTGAAATCTACAATCTATTC
321 TCTGAAATCTTCAATCTACTTCACGCCAGCCCAAGGAGACAAGATCTG--AGCTACAATCTACTC
** * * **
37567135 CACTGTTGCCTAGGGAAGTAGAATTACTGGCTTCAATATACTCCACTGTAACCACATGGAGGTAA
384 CACTGTAACCCAGGGAAGTAAAATTACCAGCTTCAATATACTCCACTGT-ACCACATGGAGGTAA
* * *
37567200 AATCTGCCATCTTCGATCTGCTCCACTACTGTTTAGGGAGATAAGATCTGAAATCTTCAATCTAT
448 AATCTGCTATCTTCGATCTGCTTCACTACTGTTTAGGGAGATGAGATCTGAAATCTTCAATCTAT
37567265 TCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCA
513 TCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCA
*
37567321 CAGGAAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAAT
1 CAGG-AGGTAAAATCTGCCATCTTTGATCTGCTTCACTACTGCTTAGGGAGACAAGATCTGAAAT
*
37567386 CTTCAATCTATTCCGCTGCTGCCCAGGGAAGTAGAATTTCTGGCTTCAATGTACTCCACTGTAAC
65 CTTCAATCTATTCCGCTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
*
37567451 CACAGGGAGGTAAAATTCATCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAA
130 CACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAA
*
37567516 ATCTTCAATCTATTACACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTA
195 ATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTA
** * * * * * * *
37567581 TTCACAGAGAGGTAAAAT-TCACCATCTTTGATTTGCCCCACTACTGCTTAGGGAGACAATATCT
260 ACCACAGGGAGGTAAAATCT-GCCATCTTCGATCTGCTCCACTACTGCTTAGGAAGACAAGATCT
37567645 GAAATCTTCAATCTA
324 GAAATCTTCAATCTA
37567660 TTCCACTGCT
Statistics
Matches: 3479, Mismatches: 226, Indels: 139
0.91 0.06 0.04
Matches are distributed among these distances:
568 2 0.00
569 3 0.00
570 6 0.00
571 374 0.11
572 946 0.27
573 1983 0.57
574 98 0.03
575 54 0.02
576 8 0.00
577 5 0.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (568 bp):
CAGGAGGTAAAATCTGCCATCTTTGATCTGCTTCACTACTGCTTAGGGAGACAAGATCTGAAATC
TTCAATCTATTCCGCTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACC
ACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAA
TCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAA
CCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTACTGCTTAGGAAGACAAGATCTGA
AATCTTCAATCTACTTCACGCCAGCCCAAGGAGACAAGATCTGAGCTACAATCTACTCCACTGTA
ACCCAGGGAAGTAAAATTACCAGCTTCAATATACTCCACTGTACCACATGGAGGTAAAATCTGCT
ATCTTCGATCTGCTTCACTACTGTTTAGGGAGATGAGATCTGAAATCTTCAATCTATTCCACTGC
TGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCA
Found at i:37565148 original size:132 final size:132
Alignment explanation
Indices: 37564911--37565327 Score: 665
Period size: 132 Copynumber: 3.2 Consensus size: 132
37564901 GGAAGGCAAG
* * * ** * * * *
37564911 ATCTGCTATCTTTGATCTACTTCACGCCAGCTTAAGGAGACAAGATTTGAAATCTACAATCTATT
1 ATCTGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATT
* *
37564976 CCACTGTTGCCTAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACATGGAGGTA
66 CCACTGCTGCCTAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTA
37565041 AA
131 AA
37565043 ATCTGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATT
1 ATCTGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATT
* *
37565108 CCGCTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTA
66 CCACTGCTGCCTAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTA
37565173 AA
131 AA
*
37565175 AT-TCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTAT
1 ATCT-GCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTAT
* *
37565239 TCCACTACTGCCTAGGGAAGTAGAATTACTGGCTTCAATGTACTCTACTGTAACCACAGGGAGGT
65 TCCACTGCTGCCTAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGT
37565304 AAA
130 AAA
*
37565307 ATCTGCCATCTTCGATCTGCT
1 ATCTGCCATCTTTGATCTGCT
37565328 TCGCTGTCTA
Statistics
Matches: 263, Mismatches: 20, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
131 1 0.00
132 261 0.99
133 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (132 bp):
ATCTGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATT
CCACTGCTGCCTAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTA
AA
Found at i:37565365 original size:309 final size:308
Alignment explanation
Indices: 37564711--37565641 Score: 1049
Period size: 309 Copynumber: 3.0 Consensus size: 308
37564701 CAATGTACTC
* * * *
37564711 CACTGTAACCACAGGGAGGTAAAAT-TCACCATCTTTGACCTGCTCCACTACTGCTTAGGGAGAC
1 CACTGT-ACCACATGGAGGCAAAATCT-GCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGAC
37564775 AAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTA
64 AAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTA
* *
37564840 CTCTACTGTAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGTCTA-TGC--AG
129 CTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGC-TC-C--ACTACTGCTTAG
* * ** ** ** * * * ** * *
37564902 GAAGGCAAGATCTGCTATCTTTGATCTACTT-CACGCCAGCTTAAGGAGACAAGATTTGAAAT--
190 GGAGACAAGATCTGAAATCTTCAATCTA-TTCCACTACTGCCTAGGGA-AGTAGAATT--ACTGG
* * * ** * * * * *** * * * *
37564964 CTACAATCTATTCCACTGTTGCC-TAGGGAAGTAGAAT-TACTGGCTTCAATGTACTC
251 CTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTT
*
37565020 CACTGTAACCACATGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACA
1 CACTGT-ACCACATGGAGGCAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACA
*
37565085 AGATCTGAAATCTTCAATCTATTCCGCTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTAC
65 AGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTAC
* *
37565150 TCCACTGTAACCACAGGGAGGTAAAAT-TCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAG
130 TCCACTGTAACCACAGGGAGGTAAAATCT-GCCATCTTCGATCTGCTCCACTACTGCTTAGGGAG
37565214 ACAAGATCTGAAATCTTCAATCTATTCCACTACTGCCTAGGGAAGTAGAATTACTGGCTTCAATG
194 ACAAGATCTGAAATCTTCAATCTATTCCACTACTGCCTAGGGAAGTAGAATTACTGGCTTCAATG
*
37565279 TACTCTACTGTAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTT
259 TACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTT
* * * * * * ** * *
37565329 CGCTGT-CTATGCA-GGAAGGCAAGATCTGCTATCTTTGATCTACTTCACGCCAGCTTAAGGAGA
1 CACTGTACCA--CATGG-AGGCAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGA
* * * * *
37565392 CAAGATCTGAAATCTACAATCTATTCCACTGTTGCCTAGGGAAGTAGAATTACTAGCTTCAATAT
63 CAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGT
* * *
37565457 ACTCCACTGTAACCACATGGAGGTAAAATCTGTCATCTTCGATCTGCTCCACTACTGTTTAGGGA
128 ACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTACTGCTTAGGGA
** * *
37565522 GATGAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAAT
193 GACAAGATCTGAAATCTTCAATCTATTCCACTACTGCCTAGGGAAGTAGAATTACTGGCTTCAAT
* *
37565587 GTACTCCACTATAACCACAGGGAGGTAAAATCTGCCATCTTTGATCTGCTT
258 GTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTT
37565638 CACT
1 CACT
37565642 ACTGCTTAGG
Statistics
Matches: 538, Mismatches: 70, Indels: 28
0.85 0.11 0.04
Matches are distributed among these distances:
305 5 0.01
306 3 0.01
307 28 0.05
308 51 0.09
309 449 0.83
310 2 0.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.28
Consensus pattern (308 bp):
CACTGTACCACATGGAGGCAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAA
GATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACT
CCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGAC
AAGATCTGAAATCTTCAATCTATTCCACTACTGCCTAGGGAAGTAGAATTACTGGCTTCAATGTA
CTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTT
Found at i:37565592 original size:132 final size:132
Alignment explanation
Indices: 37565381--37565899 Score: 826
Period size: 132 Copynumber: 3.9 Consensus size: 132
37565371 CTTCACGCCA
* * * *
37565381 GCTTAAGGAGACAAGATCTGAAATCTACAATCTATTCCACTGTTGCCTAGGGAAGTAGAATTACT
1 GCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACT
* * * *
37565446 AGCTTCAATATACTCCACTGTAACCACATGGAGGTAAAATCTGTCATCTTCGATCTGCTCCACTA
66 GGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTA
37565511 CT
131 CT
* **
37565513 GTTTAGGGAGATGAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACT
1 GCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACT
* * *
37565578 GGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCACTA
66 GGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTA
37565643 CT
131 CT
* * *
37565645 GCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGTCCAGGGAAGTAGAATTTCT
1 GCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACT
* * *
37565710 GGCTTCAATTTACTCCACTGTAACCACAGGGAGGTAAAAT-TCACCATCTTTGATCTGCTCCACT
66 GGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCT-GCCATCTTCGATCTGCTCCACT
37565774 ACT
130 ACT
37565777 GCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACT
1 GCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACT
*
37565842 GGCTTCAATGTACTCTACTGTAACCACAGGGAGG-AAAATCTGCCATCTTCGATCTGCT
66 GGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCT
37565900 TCGCTGTCTA
Statistics
Matches: 354, Mismatches: 31, Indels: 5
0.91 0.08 0.01
Matches are distributed among these distances:
131 21 0.06
132 333 0.94
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.29
Consensus pattern (132 bp):
GCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACT
GGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTA
CT
Found at i:37566285 original size:132 final size:132
Alignment explanation
Indices: 37565924--37566473 Score: 852
Period size: 132 Copynumber: 4.2 Consensus size: 132
37565914 GGAAGGCAAG
* * ** * * * *
37565924 ATCTGCTATCTTTGATCTACTTCACGCCAGCTTAAGGAGACAAGATCTGAAATCTACAATCTTTT
1 ATCTGCCATCTTTGATCTGCTTCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATT
* * *
37565989 CCACTGTTGCCTAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACATGGAGGTA
66 CCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTA
37566054 AA
131 AA
* * * **
37566056 ATCTGCCATCTTCGATCTGC-TGACTACTGTTTAGGGAGATGAGATCTGAAATCTTCAATCTATT
1 ATCTGCCATCTTTGATCTGCTTCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATT
*
37566120 CCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGCA
66 CCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTA
37566185 AA
131 AA
*
37566187 ATCTTCCATCTTTGATCTGCTTCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATT
1 ATCTGCCATCTTTGATCTGCTTCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATT
*
37566252 CCGCTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTA
66 CCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTA
37566317 AA
131 AA
* *
37566319 AT-TCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTAT
1 ATCT-GCCATCTTTGATCTGCTTCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTAT
* * *
37566383 TCCACTACTGCCTAGGGAAGTAGAATTACTGGCTTCAATGTACTCTACTGTAACCACAGGGAGGT
65 TCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGT
37566448 AAA
130 AAA
*
37566451 ATCTGCCATCTTCGATCTGCTTC
1 ATCTGCCATCTTTGATCTGCTTC
37566474 GCTGTCTATG
Statistics
Matches: 381, Mismatches: 34, Indels: 6
0.90 0.08 0.01
Matches are distributed among these distances:
131 116 0.30
132 264 0.69
133 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (132 bp):
ATCTGCCATCTTTGATCTGCTTCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATT
CCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTA
AA
Found at i:37566608 original size:264 final size:263
Alignment explanation
Indices: 37565912--37566608 Score: 613
Period size: 263 Copynumber: 2.6 Consensus size: 263
37565902 GCTGTCTATG
* * * * * ** * *
37565912 CAGGAAGGCAAGATCTGCTATCTTTGATCTACTTCACGCCAGCTTAAGG-AGACAAGATCTGAAA
1 CAGGGAGGCAAAATCTGCCATCTTCGATCTGCTTCACTACTGATT-AGGAAGACAAGATCTGAAA
* * * ** * * * * * *
37565976 TCTACAATCTTTTCCACTGTTGCCTAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAA
65 TCTTCAATCTATTCCGC-GCAGCCCAAGGAAGTACAAATACTGGCTACAATCTACTCCACTGTAA
* * * * * * * * * **
37566041 CCACATGGAGGTAAAA-TCTGCCATCTTCGATCTGCT-GACTACTGTTTAGGGAGATGAGATCTG
129 CCACAGGGAAGTAAAATTC-ACCAGCTTCAATATACTCCACTACTGCTTAGGGAGACAAGATCTG
*
37566104 AAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTG
193 AAATCTTCAATCTATTCCACTACTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTG
37566169 TAACCA
258 TAACCA
* * * *
37566175 CAGGGAGGCAAAATCTTCCATCTTTGATCTGCTTCACTACTGCTTAGGGAGACAAGATCTGAAAT
1 CAGGGAGGCAAAATCTGCCATCTTCGATCTGCTTCACTACTGATTAGGAAGACAAGATCTGAAAT
* * * * * *
37566240 CTTCAATCTATTCCGCTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
66 CTTCAATCTATTCCGC-GCAGCCCAAGGAAGTACAAATACTGGCTACAATCTACTCCACTGTAAC
* * ** * *
37566305 CACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAA
130 CACAGGGAAGTAAAATTCACCAGCTTCAATATACTCCACTACTGCTTAGGGAGACAAGATCTGAA
* *
37566370 ATCTTCAATCTATTCCACTACTGCCTAGGGAAGTAGAATTACTGGCTTCAATGTACTCTACTGTA
195 ATCTTCAATCTATTCCACTACTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTA
37566435 ACCA
260 ACCA
* * * * **
37566439 CAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGTCT-ATGTAGGAAGGCAAGATCTGCT
1 CAGGGAGGCAAAATCTGCCATCTTCGATCTGCTTCACT-ACTGAT-TAGGAAGACAAGATCTGAA
** ** * *
37566503 ATCTTTGATCTACTTCACGC-CAGCTTAAGG-AG-ACAAGAT-CTGAAATCTACAATCTATTCCA
64 ATCTTCAATCTA-TTC-CGCGCAGCCCAAGGAAGTACAA-ATACTG---GCTACAATCTACTCCA
** * * *
37566564 CTGTTGCC-TAGGGAAGTAGAATT-ACTAGCTTCAATATACTCCACT
123 CTGTAACCACAGGGAAGTAAAATTCACCAGCTTCAATATACTCCACT
37566609 GTAACCACAT
Statistics
Matches: 367, Mismatches: 56, Indels: 21
0.83 0.13 0.05
Matches are distributed among these distances:
262 3 0.01
263 148 0.40
264 147 0.40
265 45 0.12
266 21 0.06
267 3 0.01
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (263 bp):
CAGGGAGGCAAAATCTGCCATCTTCGATCTGCTTCACTACTGATTAGGAAGACAAGATCTGAAAT
CTTCAATCTATTCCGCGCAGCCCAAGGAAGTACAAATACTGGCTACAATCTACTCCACTGTAACC
ACAGGGAAGTAAAATTCACCAGCTTCAATATACTCCACTACTGCTTAGGGAGACAAGATCTGAAA
TCTTCAATCTATTCCACTACTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAA
CCA
Found at i:37566679 original size:441 final size:438
Alignment explanation
Indices: 37565607--37567358 Score: 1821
Period size: 441 Copynumber: 4.0 Consensus size: 438
37565597 ATAACCACAG
* * * * *
37565607 GGAGGTAAAATCTGCCATCTTTGATCTGCTTCACTACTGCTTAGGGAGACAAGATCTGAAATCTT
1 GGAGGCAAGATCTGCCATCTTCGATCTACTTCACGACTGCTTAGGGAGACAAGATCTGAAATCTT
* * * * *
37565672 CAATCTATTCCGCTGCTGTCCAGGGAAGTAGAATTTCTGGCTTCAATTTACTCCACTGTAACCAC
66 CAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTAGCTTCAATATACTCCACTGTAACCAC
**
37565737 AGGGAGGTAAAAT-TCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAAT
131 AGGGAGGTAAAATCT-GTCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAAT
*
37565801 CTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCTACTGTAAC
195 CTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
* * *
37565866 CACAGGGAGG-AAAATCTGCCATCTTCGATCTGCTTCGCTGTCTA-TGC--AGGAAGGCAAGATC
260 CACAGGGAGGTAAAATCTGCCATCTTCGATCTGC-TC-C--ACTACTGCTTAGGGAGACAAGATC
** ** * * * * * * * * *
37565927 TGCTATCTTTGATCTACTT-CAC-GCCAGCTTAAGG-AG-ACAA-GATCTGAAATCTACAATCTT
321 TGAAATCTTCAATCTA-TTCCACTG-CTGCCTAGGGAAGTAGAATTA-CTG---GCTTCAATGTA
* ** * * * *** * * * * *
37565987 TTCCACTGTTGCC-TAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCA-CA
380 CTCCACTGTAACCACAGGGAGGTAAAATTACCATCTTCGATCTGCTCCACTGT--CTATTA
* * * * * * **
37566046 TGGAGGTAAAATCTGCCATCTTCGATCTGC-TGACTACTGTTTAGGGAGATGAGATCTGAAATCT
1 -GGAGGCAAGATCTGCCATCTTCGATCTACTTCACGACTGCTTAGGGAGACAAGATCTGAAATCT
* *
37566110 TCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCA
65 TCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTAGCTTCAATATACTCCACTGTAACCA
* *
37566175 CAGGGAGGCAAAATCT-TCCATCTTTGATCTGCTTCACTACTGCTTAGGGAGACAAGATCTGAAA
130 CAGGGAGGTAAAATCTGT-CATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAA
*
37566239 TCTTCAATCTATTCCGCTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAA
194 TCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAA
* *
37566304 CCACAGGGAGGTAAAAT-TCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTG
259 CCACAGGGAGGTAAAATCT-GCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTG
* *
37566368 AAATCTTCAATCTATTCCACTACTGCCTAGGGAAGTAGAATTACTGGCTTCAATGTACTCTACTG
323 AAATCTTCAATCTATTCCACTGCTGCCTAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTG
* * *
37566433 TAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGTCTATGTA
388 TAACCACAGGGAGGTAAAAT-TACCATCTTCGATCTGCTCCACTGTCTAT-TA
* * * * *
37566486 GGAAGGCAAGATCTGCTATCTTTGATCTACTTCACGCCAGCTTAAGGAGACAAGATCTGAAATCT
1 GG-AGGCAAGATCTGCCATCTTCGATCTACTTCACGACTGCTTAGGGAGACAAGATCTGAAATCT
* * *
37566551 ACAATCTATTCCACTGTTGCCTAGGGAAGTAGAATTACTAGCTTCAATATACTCCACTGTAACCA
65 TCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTAGCTTCAATATACTCCACTGTAACCA
* * * **
37566616 CATGGAGGTAAAATCTGTCATCTTCGATCTGCTCCACTACTGTTTAGGGAGATGAGATCTGAAAT
130 CAGGGAGGTAAAATCTGTCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAAT
*
37566681 CTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTATAAC
195 CTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
* * *
37566746 CACAGGGAGGTAAAATCTGCCATTTTTGATCTGCTTCACTACTGCTTAGGGAGACAAGATCTGAA
260 CACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAA
* *
37566811 ATCTTCAATCTATTCCGCTGCTGTCC-AGGGAAGTAGAATTTCTGGCTTCAATGTACTCCACTGT
325 ATCTTCAATCTATTCCACTGCTG-CCTAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGT
* *
37566875 AACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCCACT-ACTACTTA
389 AACCACAGGGAGGTAAAATT-ACCATCTTCGATCTGCTCCACTGTCTA-TTA
* * ** * * * *
37566926 GGGAGACAAGACCTGAAATCTTCAATCTA-TTCCACTG-CTGCCTAGGGAAGTAGAA-TTACTG-
1 -GGAGGCAAGATCTGCCATCTTCGATCTACTT-CAC-GACTGCTTAGGG-AG-ACAAGAT-CTGA
* * * * * * * * * * * * * * * *
37566987 --GCTTCAATGTACTCTAC-GGTAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGC
60 AATCTTCAATCTATTCCACTGCT-GCC-CAGGGAAGTAGAAT-TACTAGCTTCAATATACTCCAC
* * ** * * * * ** * *
37567049 TGT--CTATGCAGGAAGACAAGATCTG-CTATCTTTGATTTACTTCACGCCAGCTTAAGGAGACA
122 TGTAACCA--CAGGGAGGTAAAATCTGTC-ATCTTTGATCTGCTCCACTACTGCTTAGGGAGACA
* * * *
37567111 AGATCTGAAATCTACAATCTATTCCACTGTTGCCTAGGGAAGTAGAATTACTGGCTTCAATATAC
184 AGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTAC
* *
37567176 TCCACTGTAACCACATGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTACTGTTTAGGGAGA
249 TCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGA
* *
37567241 TAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGT
314 CAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCTAGGGAAGTAGAATTACTGGCTTCAATGT
* * *
37567306 ACTCCACTGTAACCACAGGAAGGTAAAATCTGCCATCTTTGATCTGCTCCACT
379 ACTCCACTGTAACCACAGGGAGGTAAAAT-TACCATCTTCGATCTGCTCCACT
37567359 ACTGCTTAGG
Statistics
Matches: 1124, Mismatches: 151, Indels: 73
0.83 0.11 0.05
Matches are distributed among these distances:
436 3 0.00
437 3 0.00
438 23 0.02
439 291 0.26
440 139 0.12
441 653 0.58
442 12 0.01
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (438 bp):
GGAGGCAAGATCTGCCATCTTCGATCTACTTCACGACTGCTTAGGGAGACAAGATCTGAAATCTT
CAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTAGCTTCAATATACTCCACTGTAACCAC
AGGGAGGTAAAATCTGTCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATC
TTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACC
ACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAA
TCTTCAATCTATTCCACTGCTGCCTAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAA
CCACAGGGAGGTAAAATTACCATCTTCGATCTGCTCCACTGTCTATTA
Found at i:37566736 original size:132 final size:132
Alignment explanation
Indices: 37566525--37567044 Score: 799
Period size: 132 Copynumber: 3.9 Consensus size: 132
37566515 CTTCACGCCA
* * * *
37566525 GCTTAAGGAGACAAGATCTGAAATCTACAATCTATTCCACTGTTGCCTAGGGAAGTAGAATTACT
1 GCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACT
* * * *
37566590 AGCTTCAATATACTCCACTGTAACCACATGGAGGTAAAATCTGTCATCTTCGATCTGCTCCACTA
66 GGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTA
37566655 CT
131 CT
* **
37566657 GTTTAGGGAGATGAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACT
1 GCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACT
* * * *
37566722 GGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCTGCCATTTTTGATCTGCTTCACTA
66 GGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTA
37566787 CT
131 CT
* * *
37566789 GCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGTCCAGGGAAGTAGAATTTCT
1 GCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACT
* *
37566854 GGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAAT-TCACCATCTTTGATCTGCTCCACT
66 GGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCT-GCCATCTTCGATCTGCTCCACT
37566918 ACT
130 ACT
* * *
37566921 ACTTAGGGAGACAAGACCTGAAATCTTCAATCTATTCCACTGCTGCCTAGGGAAGTAGAATTACT
1 GCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACT
* *
37566986 GGCTTCAATGTACTCTACGGTAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCT
66 GGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCT
37567045 TCGCTGTCTA
Statistics
Matches: 351, Mismatches: 35, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
131 1 0.00
132 349 0.99
133 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (132 bp):
GCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACT
GGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTA
CT
Found at i:37566753 original size:309 final size:309
Alignment explanation
Indices: 37566180--37566782 Score: 947
Period size: 309 Copynumber: 2.0 Consensus size: 309
37566170 AACCACAGGG
* * * * * *
37566180 AGGCAAAATCTTCCATCTTTGATCTGCTTCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCA
1 AGGCAAAATCTGCCATCTTTGATCTACTTCACGACAGCTTAAGGAGACAAGATCTGAAATCTACA
* * *
37566245 ATCTATTCCGCTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAG
66 ATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTAGCTTCAATATACTCCACTGTAACCACAG
*
37566310 GGAGGTAAAATTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTT
131 GGAGGTAAAATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTT
* * *
37566375 CAATCTATTCCACTACTGCCTAGGGAAGTAGAATTACTGGCTTCAATGTACTCTACTGTAACCAC
196 CAATCTATTCCACTACTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCAC
37566440 AGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGTCTATGTAGGA
261 AGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGTCTATGTAGGA
* * *
37566489 AGGCAAGATCTGCTATCTTTGATCTACTTCACGCCAGCTTAAGGAGACAAGATCTGAAATCTACA
1 AGGCAAAATCTGCCATCTTTGATCTACTTCACGACAGCTTAAGGAGACAAGATCTGAAATCTACA
* * *
37566554 ATCTATTCCACTGTTGCCTAGGGAAGTAGAATTACTAGCTTCAATATACTCCACTGTAACCACAT
66 ATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTAGCTTCAATATACTCCACTGTAACCACAG
** * **
37566619 GGAGGTAAAA-TCTGTCATCTTCGATCTGCTCCACTACTGTTTAGGGAGATGAGATCTGAAATCT
131 GGAGGTAAAATTC-ACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCT
*
37566683 TCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCA
195 TCAATCTATTCCACTACTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCA
* *
37566748 CAGGGAGGTAAAATCTGCCATTTTTGATCTGCTTC
260 CAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTC
37566783 ACTACTGCTT
Statistics
Matches: 266, Mismatches: 27, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
308 2 0.01
309 264 0.99
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (309 bp):
AGGCAAAATCTGCCATCTTTGATCTACTTCACGACAGCTTAAGGAGACAAGATCTGAAATCTACA
ATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTAGCTTCAATATACTCCACTGTAACCACAG
GGAGGTAAAATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTT
CAATCTATTCCACTACTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCAC
AGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGTCTATGTAGGA
Found at i:37567181 original size:264 final size:262
Alignment explanation
Indices: 37566533--37567181 Score: 578
Period size: 264 Copynumber: 2.5 Consensus size: 262
37566523 CAGCTTAAGG
* * * * * * * * * *
37566533 AGACAAGATCTGAAATCTACAATCTATTCCACTGTTGCCTAGGGAAGTAGAA-TTACTAGCTTCA
1 AGACAAGATCTGAAATCTTCAATCTATTCCGCAGCTGTC-AAGGAAGTACAAGAT-CTGGCTACA
* * * ** * * * * **
37566597 ATATACTCCACTGTAACCACATGGAGGTAAAA-TCTGTCATCTTCGATCTGCTCCACTACTGTTT
64 ATCTACTCCACTGTAACCACAGGGAAGTAAAATTC-ACCAGCTTCAATATACTCCACTACTACTT
** *
37566661 AGGGAGATGAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCT
128 AGGGAGACAAGACCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCT
* * *
37566726 TCAATGTACTCCACTATAACCACAGGGAGGTAAAATCTGCCATTTTTGATCTGCTTCACTACTGC
193 TCAATGTACTCCACGATAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCACTACTGC
*
37566791 TTAGGG
258 -TAGGA
* * * ** *
37566797 AGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGTCCAGGGAAGTAGAATTTCTGGCTTCAA
1 AGACAAGATCTGAAATCTTCAATCTATTCCGCAGCTGT-CAAGGAAGTACAAGATCTGGCTACAA
* * * ** * *
37566862 TGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCCACTACTACTTAG
65 TCTACTCCACTGTAACCACAGGGAAGTAAAATTCACCAGCTTCAATATACTCCACTACTACTTAG
*
37566927 GGAGACAAGACCTGAAATCTTCAATCTATTCCACTGCTGCCTAGGGAAGTAGAATTACTGGCTTC
130 GGAGACAAGACCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTC
* * * *
37566992 AATGTACTCTACGGTAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGTCTATG
195 AATGTACTCCACGATAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCACT-AC--TG
37567057 C-AGGA
257 CTAGGA
** ** * *
37567062 AGACAAGATCTGCTATCTTTGATTTACTTCACGCCAGCT-T-AAGG-AG-ACAAGATCTGAAATC
1 AGACAAGATCTGAAATCTTCAATCTA-TTC-CG-CAGCTGTCAAGGAAGTACAAGATCTG---GC
* ** * * **
37567123 TACAATCTATTCCACTGTTGCC-TAGGGAAGTAGAATT-ACTGGCTTCAATATACTCCACT
60 TACAATCTACTCCACTGTAACCACAGGGAAGTAAAATTCACCAGCTTCAATATACTCCACT
37567182 GTAACCACAT
Statistics
Matches: 323, Mismatches: 50, Indels: 24
0.81 0.13 0.06
Matches are distributed among these distances:
263 7 0.02
264 240 0.74
265 45 0.14
266 21 0.07
267 6 0.02
268 4 0.01
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (262 bp):
AGACAAGATCTGAAATCTTCAATCTATTCCGCAGCTGTCAAGGAAGTACAAGATCTGGCTACAAT
CTACTCCACTGTAACCACAGGGAAGTAAAATTCACCAGCTTCAATATACTCCACTACTACTTAGG
GAGACAAGACCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCA
ATGTACTCCACGATAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCACTACTGCTAG
GA
Found at i:37567212 original size:309 final size:309
Alignment explanation
Indices: 37566789--37567353 Score: 936
Period size: 309 Copynumber: 1.8 Consensus size: 309
37566779 CTTCACTACT
* * * *
37566789 GCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGTCCAGGGAAGTAGAATTTCT
1 GCTTAAGGAGACAAGATCTGAAATCTACAATCTATTCCACTGCTGTCCAGGGAAGTAGAATTACT
* *
37566854 GGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCCACTA
66 GGCTTCAATATACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTTCGATCTGCTCCACTA
*
37566919 CTACTTAGGGAGACAAGACCTGAAATCTTCAATCTATTCCACTGCTGCCTAGGGAAGTAGAATTA
131 CTACTTAGGGAGACAAGACCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTA
* *
37566984 CTGGCTTCAATGTACTCTACGGTAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGC
196 CTGGCTTCAATGTACTCCACGGTAACCACAGGAAGGTAAAATCTGCCATCTTCGATCTGCTTCGC
37567049 TGTCTATGCAGGAAGACAAGATCTGCTATCTTTGATTTACTTCACGCCA
261 TGTCTATGCAGGAAGACAAGATCTGCTATCTTTGATTTACTTCACGCCA
*
37567098 GCTTAAGGAGACAAGATCTGAAATCTACAATCTATTCCACTGTTG-CCTAGGGAAGTAGAATTAC
1 GCTTAAGGAGACAAGATCTGAAATCTACAATCTATTCCACTGCTGTCC-AGGGAAGTAGAATTAC
* *
37567162 TGGCTTCAATATACTCCACTGTAACCACATGGAGGTAAAA-TCTGCCATCTTCGATCTGCTCCAC
65 TGGCTTCAATATACTCCACTGTAACCACAGGGAGGTAAAATTC-ACCATCTTCGATCTGCTCCAC
** * *
37567226 TACTGTTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAAT
129 TACTACTTAGGGAGACAAGACCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAAT
* *
37567291 TACTGGCTTCAATGTACTCCACTGTAACCACAGGAAGGTAAAATCTGCCATCTTTGATCTGCT
194 TACTGGCTTCAATGTACTCCACGGTAACCACAGGAAGGTAAAATCTGCCATCTTCGATCTGCT
37567354 CCACTACTGC
Statistics
Matches: 236, Mismatches: 18, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
308 4 0.02
309 232 0.98
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.28
Consensus pattern (309 bp):
GCTTAAGGAGACAAGATCTGAAATCTACAATCTATTCCACTGCTGTCCAGGGAAGTAGAATTACT
GGCTTCAATATACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTTCGATCTGCTCCACTA
CTACTTAGGGAGACAAGACCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTA
CTGGCTTCAATGTACTCCACGGTAACCACAGGAAGGTAAAATCTGCCATCTTCGATCTGCTTCGC
TGTCTATGCAGGAAGACAAGATCTGCTATCTTTGATTTACTTCACGCCA
Found at i:37567282 original size:44 final size:44
Alignment explanation
Indices: 37567234--37567546 Score: 117
Period size: 44 Copynumber: 7.1 Consensus size: 44
37567224 ACTACTGTTT
*
37567234 AGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCC
1 AGGGAGATAAGATCTGAAATCTTCAATCTACTCCACTGCTGCCC
* * *
37567278 AGGGA-AGT-AGAATTACTG---GCTTCAATGTACTCCACTG-TAACCAC
1 AGGGAGA-TAAG-A-T-CTGAAATCTTCAATCTACTCCACTGCT-GCC-C
* * * ** ** * * **
37567322 AGGAAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTT
1 AGGGAGATAAGATCTGAAATCTTCAATCTACTCCACTGCTGCCC
* * *
37567366 AGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGCCC
1 AGGGAGATAAGATCTGAAATCTTCAATCTACTCCACTGCTGCCC
* ** * * *
37567410 AGGGAAGTAGAATTTCTG---GCTTCAATGTACTCCACTG-TAACCAC
1 AGGG-AG-ATAAGATCTGAAATCTTCAATCTACTCCACTGCT-GCC-C
* * * * ** * * **
37567454 AGGGAGGTAAAAT-TCATCATCTTTGATCTGCTCCACTACTGCTT
1 AGGGAGATAAGATCTGA-AATCTTCAATCTACTCCACTGCTGCCC
* * *
37567498 AGGGAGACAAGATCTGAAATCTTCAATCTATTACACTGCTGCCC
1 AGGGAGATAAGATCTGAAATCTTCAATCTACTCCACTGCTGCCC
37567542 AGGGA
1 AGGGA
37567547 AGTAGAATTA
Statistics
Matches: 182, Mismatches: 65, Indels: 44
0.63 0.22 0.15
Matches are distributed among these distances:
41 1 0.01
42 8 0.04
43 41 0.23
44 86 0.47
45 34 0.19
46 12 0.07
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (44 bp):
AGGGAGATAAGATCTGAAATCTTCAATCTACTCCACTGCTGCCC
Found at i:37567309 original size:132 final size:131
Alignment explanation
Indices: 37567098--37567919 Score: 1227
Period size: 132 Copynumber: 6.2 Consensus size: 131
37567088 CTTCACGCCA
* * * *
37567098 GCTTAAGGAGACAAGATCTGAAATCTACAATCTATTCCACTGTTGCCTAGGGAAGTAGAATTACT
1 GCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACT
* *
37567163 GGCTTCAATATACTCCACTGTAACCACATGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTA
66 GGCTTCAATGTACTCCACTGTAACCACA-GGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTA
37567228 CT
130 CT
* *
37567230 GTTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACT
1 GCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACT
37567295 GGCTTCAATGTACTCCACTGTAACCACAGGAAGGTAAAATCTGCCATCTTTGATCTGCTCCACTA
66 GGCTTCAATGTACTCCACTGTAACCACAGG-AGGTAAAATCTGCCATCTTTGATCTGCTCCACTA
37567360 CT
130 CT
* *
37567362 GCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGCCCAGGGAAGTAGAATTTCT
1 GCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACT
37567427 GGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAAT-T-CATCATCTTTGATCTGCTCCAC
66 GGCTTCAATGTACTCCACTGTAACCACA-GGAGGTAAAATCTGC--CATCTTTGATCTGCTCCAC
37567490 TACT
128 TACT
*
37567494 GCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTACACTGCTGCCCAGGGAAGTAGAATTACT
1 GCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACT
** * * *
37567559 GGCTTCAATGTACTCCACTGTATTCACAGAGAGGTAAAAT-TCACCATCTTTGATTTGCCCCACT
66 GGCTTCAATGTACTCCACTGTAACCACAG-GAGGTAAAATCT-GCCATCTTTGATCTGCTCCACT
37567623 ACT
129 ACT
* * *
37567626 GCTTAGGGAGACAATATCTGAAATCTTCAATCTATTCCACTGCTGTCCAGGGAAGTAGAATTGCT
1 GCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACT
* * * * * * *
37567691 GGCTTTAATGTACTCCAATGTAACTACGATGAGGTAAAATCTGCCATTTTTTATCTGCTCTACTA
66 GGCTTCAATGTACTCCACTGTAACCAC-AGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTA
37567756 CT
130 CT
* *
37567758 GCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTACCCAGGGAAGTAGAATTACT
1 GCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACT
* * ** *
37567823 GGCTTCAATATACTCCACTGCAACTTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTA
66 GGCTTCAATGTACTCCACTGTAACCACA-GGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTA
37567888 CT
130 CT
* *
37567890 GCTTAGGGAGGCAAGATCTGTAATCTTCAA
1 GCTTAGGGAGACAAGATCTGAAATCTTCAA
37567920 CCTGCTCCAC
Statistics
Matches: 628, Mismatches: 52, Indels: 20
0.90 0.07 0.03
Matches are distributed among these distances:
130 1 0.00
131 5 0.01
132 617 0.98
133 4 0.01
134 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (131 bp):
GCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACT
GGCTTCAATGTACTCCACTGTAACCACAGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTAC
T
Found at i:37567490 original size:309 final size:305
Alignment explanation
Indices: 37566835--37567467 Score: 749
Period size: 309 Copynumber: 2.1 Consensus size: 305
37566825 CCGCTGCTGT
* * *
37566835 CCAGGGAAGTAGAATTTCTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCA
1 CCAGGGAAGTAAAATTACT-GCTTCAATATACTCCACTGTAACCACAGGGAGGTAAAATTCACCA
*
37566900 TCTTTGATCTGCTCCACTACTACTTAGGGAGACAAGACCTGAAATCTTCAATCTATTCCACTGCT
65 TCTTCGATCTGCTCCACTACTACTTAGGGAGACAAGACCTGAAATCTTCAATCTATTCCACTGCT
* * *
37566965 GCCTAGGGAAGTAGAATTACTGGCTTCAATGTACTCTACGGTAACCACAGGGAGGTAAAATCTGC
130 GCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACGGTAACCACAGGAAGGTAAAATCTGC
* ** ** *
37567030 CATCTTCGATCTGCTTCGCTGTCTATGCAGGAAGACAAGATCTGCTATCTTTGATTTACTTCACG
195 CATCTTCGATCTGCTTCGC-GACTATGCAGGAAGACAAGATCTGAAATCTTCAATCTACTTCACG
** * * **
37567095 CCAGCTTAAGGAGACAAGATCTGAAATCTACAATCTATTCCACTGTTGC
259 CCAGCCCAAGGAGACAAGATCTG--AGCTACAATCTACTCCACTGTAAC
* * * *
37567144 CTAGGGAAGTAGAATTACTGGCTTCAATATACTCCACTGTAACCACATGGAGGTAAAA-TCTGCC
1 CCAGGGAAGTAAAATTACT-GCTTCAATATACTCCACTGTAACCACAGGGAGGTAAAATTC-ACC
** * *
37567208 ATCTTCGATCTGCTCCACTACTGTTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGC
64 ATCTTCGATCTGCTCCACTACTACTTAGGGAGACAAGACCTGAAATCTTCAATCTATTCCACTGC
*
37567273 TGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGAAGGTAAAATCTG
129 TGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACGGTAACCACAGGAAGGTAAAATCTG
* *
37567338 CCATCTTTGATCTGC-TC-C-ACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTA-TTC
194 CCATCTTCGATCTGCTTCGCGACTA-TGC--AGGAAGACAAGATCTGAAATCTTCAATCTACTTC
* * * ** * *
37567399 -CGCTGCTGCCCAGGGAAGTAGAATTTCTG-GCTTCAATGTACTCCACTGTAAC
256 ACGC--CAGCCCAAGG-AG-ACAAGATCTGAGCTACAATCTACTCCACTGTAAC
*
37567451 CACAGGGAGGTAAAATT
1 C-CAGGGAAGTAAAATT
37567468 CATCATCTTT
Statistics
Matches: 277, Mismatches: 38, Indels: 19
0.83 0.11 0.06
Matches are distributed among these distances:
305 3 0.01
306 6 0.02
307 22 0.08
308 46 0.17
309 193 0.70
310 7 0.03
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.28
Consensus pattern (305 bp):
CCAGGGAAGTAAAATTACTGCTTCAATATACTCCACTGTAACCACAGGGAGGTAAAATTCACCAT
CTTCGATCTGCTCCACTACTACTTAGGGAGACAAGACCTGAAATCTTCAATCTATTCCACTGCTG
CCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACGGTAACCACAGGAAGGTAAAATCTGCC
ATCTTCGATCTGCTTCGCGACTATGCAGGAAGACAAGATCTGAAATCTTCAATCTACTTCACGCC
AGCCCAAGGAGACAAGATCTGAGCTACAATCTACTCCACTGTAAC
Found at i:37569260 original size:21 final size:21
Alignment explanation
Indices: 37569235--37569282 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
37569225 CTCCATTTTT
*
37569235 ACTTTTTCA-TTTTTCATTTC
1 ACTTTTTCATTTTTTCATATC
37569255 A-TCTTTTCATTTTTTCATATC
1 ACT-TTTTCATTTTTTCATATC
37569276 ACTTTTT
1 ACTTTTT
37569283 TTTGGACCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
19 1 0.04
20 7 0.29
21 15 0.62
22 1 0.04
ACGTcount: A:0.17, C:0.19, G:0.00, T:0.65
Consensus pattern (21 bp):
ACTTTTTCATTTTTTCATATC
Found at i:37569263 original size:20 final size:20
Alignment explanation
Indices: 37569238--37569281 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
37569228 CATTTTTACT
*
37569238 TTTTCA-TTTTTCATTTCATC
1 TTTTCATTTTTTCATATCA-C
37569258 TTTTCATTTTTTCATATCAC
1 TTTTCATTTTTTCATATCAC
37569278 TTTT
1 TTTT
37569282 TTTTGGACCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 11 0.50
21 11 0.50
ACGTcount: A:0.16, C:0.18, G:0.00, T:0.66
Consensus pattern (20 bp):
TTTTCATTTTTTCATATCAC
Found at i:37574085 original size:29 final size:27
Alignment explanation
Indices: 37574048--37574107 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 27
37574038 ACTGCTGGGC
37574048 TAGGGTTAGTTTGGGGCTTAGGTGGGTAT
1 TAGGGTTAGTTT-GGGCTTAGGTGGGT-T
* *
37574077 TAGGTTTAGTTTGGGCTTGGGTGGGTT
1 TAGGGTTAGTTTGGGCTTAGGTGGGTT
37574104 TAGG
1 TAGG
37574108 CCTGCTAGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 5 0.17
28 13 0.45
29 11 0.38
ACGTcount: A:0.12, C:0.03, G:0.45, T:0.40
Consensus pattern (27 bp):
TAGGGTTAGTTTGGGCTTAGGTGGGTT
Found at i:37574607 original size:34 final size:35
Alignment explanation
Indices: 37574559--37574649 Score: 123
Period size: 34 Copynumber: 2.7 Consensus size: 35
37574549 GAGTTTTTTT
* * *
37574559 TAAAATAATTAAATTAGGTTTTAGGGATTTCAA-A
1 TAAATTAATTAAATTAGGGTTTAGAGATTTCAAGA
* *
37574593 TAAATTAATTAAATTAGGGTTTAGAGTTTTTAAGA
1 TAAATTAATTAAATTAGGGTTTAGAGATTTCAAGA
37574628 -AAATTAATTAAATTAGGGTTTA
1 TAAATTAATTAAATTAGGGTTTA
37574650 ATTTTTTAAA
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
34 50 0.98
35 1 0.02
ACGTcount: A:0.43, C:0.01, G:0.15, T:0.41
Consensus pattern (35 bp):
TAAATTAATTAAATTAGGGTTTAGAGATTTCAAGA
Found at i:37574907 original size:126 final size:126
Alignment explanation
Indices: 37574751--37575271 Score: 749
Period size: 126 Copynumber: 4.1 Consensus size: 126
37574741 ATTTTACTTT
* * * * *
37574751 TTTTTCTACAGTAGTTTCAGAAAAATTAATTTTGAGAAGACGGTTCTGAAAAGATAATGTCAAAA
1 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAAA
* * *
37574816 ACACTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCATGTGGACGCTC
66 ACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACACTC
* * *
37574877 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACAGTTTTGAAAAACTAGTGTCAAAA
1 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAAA
* * * *
37574942 ACGCTTCAAGCAAGATGCACTGTTAGCAAAATTACTAAAAAAAAGCTCCCACGTGGAGACTC
66 ACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACT-GAAAAAAGCTCCCACGTGGACACTC
* * * *
37575004 TTTTTCTACAG-AGTTCCTGAAAAAATCACTTTGAGAAGACGATTTTGAAAAAAATAGTGTCAAA
1 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGGTTCTG-AAAAAATAGTGTCAAA
** * *
37575068 AACGCTTCAAGCAGGATGCACTGTCAATAAAATTACTGAAAAAAGCTTCCACGTGGACACTT
65 AACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACACTC
*
37575130 TTTTTCTACAGTAGTTCCTAAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAAA
1 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAAA
* ** * *
37575195 ACGCGTCAAGCAGGATGTGCTGTCAGCAAAATTATTGAAAAAAGCTCCCACATGGACACTC
66 ACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACACTC
37575256 -TTTTCTACAGTAGTTC
1 TTTTTCTACAGTAGTTC
37575272 TTGCTTGGCC
Statistics
Matches: 350, Mismatches: 42, Indels: 7
0.88 0.11 0.02
Matches are distributed among these distances:
125 16 0.05
126 223 0.64
127 111 0.32
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.27
Consensus pattern (126 bp):
TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAAA
ACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACACTC
Found at i:37575206 original size:253 final size:252
Alignment explanation
Indices: 37574751--37575271 Score: 749
Period size: 253 Copynumber: 2.1 Consensus size: 252
37574741 ATTTTACTTT
* * * * *
37574751 TTTTTCTACAGTAGTTTCAGAAAAATTAATTTTGAGAAGACGGTTCTGAAAAGATAATGTCAAAA
1 TTTTTCTACAGTAGTTCCAGAAAAAATAACTTTGAGAAGACGATTCTGAAAAAATAATGTCAAAA
* * *
37574816 ACACTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCATGTGGACGCTCTTTT
66 ACACTTCAAGCAGGATGCACTGTCAACAAAATTACTGAAAAAAGCTCCCACGTGGACACTCTTTT
* * *
37574881 TCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACAGTTTTGAAAAACTAGTGTCAAAAACGC
131 TCTACAGTAGTTCCTAAAAAAATAATTTTGAGAAGACAGTTCTGAAAAAATAGTGTCAAAAACGC
* * * *
37574946 TTCAAGCAAGATGCACTGTTAGCAAAATTACTAAAAAAAAGCTCCCACGTGGAGACTC
196 GTCAAGCAAGATGCACTGTCAGCAAAATTA-TAAAAAAAAGCTCCCACATGGACACTC
* * * *
37575004 TTTTTCTACAG-AGTTCCTGAAAAAATCACTTTGAGAAGACGATTTTGAAAAAAATAGTGTCAAA
1 TTTTTCTACAGTAGTTCCAGAAAAAATAACTTTGAGAAGACGATTCTG-AAAAAATAATGTCAAA
* * * *
37575068 AACGCTTCAAGCAGGATGCACTGTCAATAAAATTACTGAAAAAAGCTTCCACGTGGACACTTTTT
65 AACACTTCAAGCAGGATGCACTGTCAACAAAATTACTGAAAAAAGCTCCCACGTGGACACTCTTT
*
37575133 TTCTACAGTAGTTCCTAAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAAAACG
130 TTCTACAGTAGTTCCTAAAAAAATAATTTTGAGAAGACAGTTCTGAAAAAATAGTGTCAAAAACG
* ** **
37575198 CGTCAAGCAGGATGTGCTGTCAGCAAAATTATTGAAAAAAGCTCCCACATGGACACTC
195 CGTCAAGCAAGATGCACTGTCAGCAAAATTATAAAAAAAAGCTCCCACATGGACACTC
37575256 -TTTTCTACAGTAGTTC
1 TTTTTCTACAGTAGTTC
37575272 TTGCTTGGCC
Statistics
Matches: 237, Mismatches: 29, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
251 10 0.04
252 57 0.24
253 170 0.72
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.27
Consensus pattern (252 bp):
TTTTTCTACAGTAGTTCCAGAAAAAATAACTTTGAGAAGACGATTCTGAAAAAATAATGTCAAAA
ACACTTCAAGCAGGATGCACTGTCAACAAAATTACTGAAAAAAGCTCCCACGTGGACACTCTTTT
TCTACAGTAGTTCCTAAAAAAATAATTTTGAGAAGACAGTTCTGAAAAAATAGTGTCAAAAACGC
GTCAAGCAAGATGCACTGTCAGCAAAATTATAAAAAAAAGCTCCCACATGGACACTC
Found at i:37581519 original size:33 final size:33
Alignment explanation
Indices: 37581431--37581546 Score: 99
Period size: 33 Copynumber: 3.5 Consensus size: 33
37581421 CTACTATGGT
* * ** *
37581431 CCAACCATGGTCTTACATTCAAGGTGCCATAAC
1 CCAACTATGGTCTTACATTTAAAATGCCATAGC
* *
37581464 CCAATTATGGTCTTTTCA-TTAAAATGCCATAGC
1 CCAACTATGGTC-TTACATTTAAAATGCCATAGC
* * *
37581497 CCAGCTATGGTCTTACATTTAAACATTGCCATGGT
1 CCAACTATGGTCTTACATTTAAA-A-TGCCATAGC
*
37581532 CCAACCATGGTCTTA
1 CCAACTATGGTCTTA
37581547 TCCGTCAATT
Statistics
Matches: 65, Mismatches: 14, Indels: 6
0.76 0.16 0.07
Matches are distributed among these distances:
32 4 0.06
33 36 0.55
34 5 0.08
35 20 0.31
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (33 bp):
CCAACTATGGTCTTACATTTAAAATGCCATAGC
Found at i:37584807 original size:78 final size:78
Alignment explanation
Indices: 37584647--37584815 Score: 191
Period size: 78 Copynumber: 2.2 Consensus size: 78
37584637 TTGGACTTGG
* *
37584647 TTAAAGGTATGAATGTTATATATATGTATATGTGAGTTGGAACATATATGTATATACATGAATAA
1 TTAAAGGTATGAATGTTATATATATGTATATGTAAGTTCGAACATATATGTATATACATGAATAA
*
37584712 GTCTTGAATATAT
66 GTCTTGAATATAA
* * * * * *
37584725 TTAAAGGTATGAATG-T-TATGTATGTATATGTAATTTCGAATATGTATTTATAATACATGTATA
1 TTAAAGGTATGAATGTTATATATATGTATATGTAAGTTCGAACATATATGTAT-ATACATGAATA
* *
37584788 AGTTTTTGTAT-TGAA
65 AG-TCTTGAATAT-AA
37584803 TTAAAGGTATGAA
1 TTAAAGGTATGAA
37584816 ATTGTTAGCT
Statistics
Matches: 77, Mismatches: 11, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
76 28 0.36
77 14 0.18
78 35 0.45
ACGTcount: A:0.37, C:0.03, G:0.18, T:0.42
Consensus pattern (78 bp):
TTAAAGGTATGAATGTTATATATATGTATATGTAAGTTCGAACATATATGTATATACATGAATAA
GTCTTGAATATAA
Done.