Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67659327
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 461372 characters in sequence are not A, C, G, or T
File 118 of 216
Found at i:37600368 original size:24 final size:24
Alignment explanation
Indices: 37600341--37600387 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
37600331 ATTGAAATGG
37600341 ATTG-ATTTAGTATGTGA-TGAATTT
1 ATTGAATTTA-TAT-TGATTGAATTT
37600365 ATTGAATTTATATTGATTGAATT
1 ATTGAATTTATATTGATTGAATT
37600388 GGTATATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 3 0.14
24 13 0.62
25 5 0.24
ACGTcount: A:0.32, C:0.00, G:0.17, T:0.51
Consensus pattern (24 bp):
ATTGAATTTATATTGATTGAATTT
Found at i:37609997 original size:14 final size:14
Alignment explanation
Indices: 37609978--37610017 Score: 73
Period size: 13 Copynumber: 2.9 Consensus size: 14
37609968 GTAAGTTTAA
37609978 TTAATAAACTAAAT
1 TTAATAAACTAAAT
37609992 TTAATAAACT-AAT
1 TTAATAAACTAAAT
37610005 TTAATAAACTAAA
1 TTAATAAACTAAA
37610018 AACACATGCA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
13 13 0.52
14 12 0.48
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.35
Consensus pattern (14 bp):
TTAATAAACTAAAT
Found at i:37610103 original size:54 final size:54
Alignment explanation
Indices: 37610036--37610161 Score: 207
Period size: 54 Copynumber: 2.3 Consensus size: 54
37610026 CAACAATAAA
* * *
37610036 TTATTTCAACAACTAAATTAACTAAGAAGAACTTAATTAACTAAGATGAGTAAT
1 TTATTCCAGCAACTAAATTAACTAAGAAGAACTCAATTAACTAAGATGAGTAAT
* *
37610090 TTATTCCAGCAACTTAATTAACTAAGATGAACTCAATTAACTAAGATGAGTAAT
1 TTATTCCAGCAACTAAATTAACTAAGAAGAACTCAATTAACTAAGATGAGTAAT
37610144 TTATTCCAGCAACTAAAT
1 TTATTCCAGCAACTAAAT
37610162 ACTTATTCCA
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 66 1.00
ACGTcount: A:0.44, C:0.14, G:0.10, T:0.32
Consensus pattern (54 bp):
TTATTCCAGCAACTAAATTAACTAAGAAGAACTCAATTAACTAAGATGAGTAAT
Found at i:37610127 original size:19 final size:19
Alignment explanation
Indices: 37610100--37610138 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
37610090 TTATTCCAGC
*
37610100 AACTTAATTAACTAAGATG
1 AACTCAATTAACTAAGATG
37610119 AACTCAATTAACTAAGATG
1 AACTCAATTAACTAAGATG
37610138 A
1 A
37610139 GTAATTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.49, C:0.13, G:0.10, T:0.28
Consensus pattern (19 bp):
AACTCAATTAACTAAGATG
Found at i:37610237 original size:10 final size:10
Alignment explanation
Indices: 37610222--37610267 Score: 60
Period size: 9 Copynumber: 4.8 Consensus size: 10
37610212 GGTTAAACAT
37610222 ATGTGTTTAA
1 ATGTGTTTAA
37610232 ATGTG-TTAA
1 ATGTGTTTAA
37610241 ATGTGTTT-A
1 ATGTGTTTAA
* *
37610250 ATGCGTTTTA
1 ATGTGTTTAA
37610260 ATGTGTTT
1 ATGTGTTT
37610268 GCTAATAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
9 17 0.53
10 15 0.47
ACGTcount: A:0.24, C:0.02, G:0.22, T:0.52
Consensus pattern (10 bp):
ATGTGTTTAA
Found at i:37610262 original size:19 final size:19
Alignment explanation
Indices: 37610222--37610267 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
37610212 GGTTAAACAT
*
37610222 ATGTGTTTAAATGTGTTAA
1 ATGTGTTTAAATGCGTTAA
*
37610241 ATGTGTTT-AATGCGTTTTA
1 ATGTGTTTAAATGCG-TTAA
37610260 ATGTGTTT
1 ATGTGTTT
37610268 GCTAATAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 5 0.21
19 19 0.79
ACGTcount: A:0.24, C:0.02, G:0.22, T:0.52
Consensus pattern (19 bp):
ATGTGTTTAAATGCGTTAA
Found at i:37612734 original size:49 final size:50
Alignment explanation
Indices: 37612516--37612750 Score: 221
Period size: 51 Copynumber: 4.7 Consensus size: 50
37612506 TATCGATGAA
* * * * * *
37612516 CACGTGTGTAGTACTGTGTGAATGCTACCACGTG-TCTCGGT-AAACTACGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAAC-C-GTAAAACT-TGAT
* * * * *
37612567 CACATGTGTAGTACTAAGTGAAGGCTACTATGTGTACC--AAGAAGCTTTGAG
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAA-AA-C-TTGAT
* *
37612618 CACGTGTGTAGTACTGA-GTGAAGGCTACTACGGGAGCCGTAAAACTTGAT
1 CACGTGTGTAGTACT-ATGTGAAGGCTACTACGTGAACCGTAAAACTTGAT
* **
37612668 CACGTGTGTAGTACTATGTGAAAGCTACTACGTGAATTGTAAAAC-TGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGAT
37612717 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG
37612751 TATCGAATGA
Statistics
Matches: 153, Mismatches: 22, Indels: 20
0.78 0.11 0.10
Matches are distributed among these distances:
49 39 0.25
50 44 0.29
51 63 0.41
52 5 0.03
53 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (50 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGAT
Found at i:37615650 original size:9 final size:9
Alignment explanation
Indices: 37615635--37615697 Score: 74
Period size: 9 Copynumber: 6.9 Consensus size: 9
37615625 GGTAATTTTT
37615635 GGGTAATTC
1 GGGTAATTC
*
37615644 AGGTAATTTTC
1 GGGTAA--TTC
37615655 GGGTAATTC
1 GGGTAATTC
*
37615664 GGTTAATTC
1 GGGTAATTC
*
37615673 GGTTAA-TC
1 GGGTAATTC
37615681 GGGTAATTC
1 GGGTAATTC
37615690 GGGTAATT
1 GGGTAATT
37615698 TTTAACCAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
8 7 0.15
9 32 0.68
11 8 0.17
ACGTcount: A:0.24, C:0.10, G:0.29, T:0.38
Consensus pattern (9 bp):
GGGTAATTC
Found at i:37615671 original size:20 final size:20
Alignment explanation
Indices: 37615625--37615663 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
37615615 GAACTTTTTG
*
37615625 GGTAATTTTTGGGTAATTCA
1 GGTAATTTTCGGGTAATTCA
37615645 GGTAATTTTCGGGTAATTC
1 GGTAATTTTCGGGTAATTC
37615664 GGTTAATTCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.23, C:0.08, G:0.26, T:0.44
Consensus pattern (20 bp):
GGTAATTTTCGGGTAATTCA
Found at i:37615687 original size:17 final size:17
Alignment explanation
Indices: 37615652--37615696 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
37615642 TCAGGTAATT
*
37615652 TTCGGGTAATTCGGTTAA
1 TTCGGGTAA-TCGGGTAA
*
37615670 TTCGGTTAATCGGGTAA
1 TTCGGGTAATCGGGTAA
37615687 TTCGGGTAAT
1 TTCGGGTAAT
37615697 TTTTAACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
17 16 0.67
18 8 0.33
ACGTcount: A:0.22, C:0.11, G:0.29, T:0.38
Consensus pattern (17 bp):
TTCGGGTAATCGGGTAA
Found at i:37615815 original size:27 final size:28
Alignment explanation
Indices: 37615760--37615818 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
37615750 TTATTAACTG
* ***
37615760 AAAAAAATTCGGTTCGGTTAATTTTTTA
1 AAAAAAATTCGATTCGGTTAATAGGTTA
37615788 AAAAAAATTCGATTCGGTTAA-AGGTTA
1 AAAAAAATTCGATTCGGTTAATAGGTTA
37615815 AAAA
1 AAAA
37615819 TTTTGGAAGG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
27 7 0.26
28 20 0.74
ACGTcount: A:0.44, C:0.07, G:0.15, T:0.34
Consensus pattern (28 bp):
AAAAAAATTCGATTCGGTTAATAGGTTA
Found at i:37620777 original size:50 final size:49
Alignment explanation
Indices: 37620650--37620834 Score: 232
Period size: 50 Copynumber: 3.7 Consensus size: 49
37620640 TAAACTACGG
* *
37620650 TCACATGTGTAGTACTAAGTGAAGGCTACTATGTGTACC--AAGAAGCTTTGA
1 TCACGTGTGTAGTACTAAGTGAAGGCTACTACGTG-ACCGTAA-AA-C-TTGA
*
37620701 GCACGTGTGTAGTACTAAGTGAAGGCTACTACGTGAGCCGTAAAACTTGA
1 TCACGTGTGTAGTACTAAGTGAAGGCTACTACGTGA-CCGTAAAACTTGA
* **
37620751 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATTGTAAAAC-TGA
1 TCACGTGTGTAGTACTAAGTGAAGGCTACTACGTG-ACCGTAAAACTTGA
*
37620800 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTG
1 TCACGTGTGTAGTACTAAGTGAAGGCTACTACGTG
37620835 TGTCGAATGA
Statistics
Matches: 123, Mismatches: 7, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
49 38 0.31
50 45 0.37
51 36 0.29
52 2 0.02
53 2 0.02
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (49 bp):
TCACGTGTGTAGTACTAAGTGAAGGCTACTACGTGACCGTAAAACTTGA
Found at i:37620820 original size:49 final size:49
Alignment explanation
Indices: 37620600--37620834 Score: 233
Period size: 51 Copynumber: 4.7 Consensus size: 49
37620590 TATCGATGAA
* * * * * *
37620600 CACGTGTGTAGTACTGTGTGAATGCTACCACGTGTCTTGGT-AAACTACGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG-ATT-GTAAAACT-TGAT
* * * *** *
37620651 CACATGTGTAGTACTAAGTGAAGGCTACTATGTG-TACCAAGAAGCTTTGAG
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGATTGTAA-AA-C-TTGAT
* **
37620702 CACGTGTGTAGTACTAAGTGAAGGCTACTACGTGAGCCGTAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGA-TTGTAAAACTTGAT
37620752 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATTGTAAAAC-TGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG-ATTGTAAAACTTGAT
37620801 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG
37620835 TGTCGAATGA
Statistics
Matches: 155, Mismatches: 22, Indels: 16
0.80 0.11 0.08
Matches are distributed among these distances:
49 40 0.26
50 46 0.30
51 64 0.41
52 3 0.02
53 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (49 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGATTGTAAAACTTGAT
Found at i:37628236 original size:15 final size:15
Alignment explanation
Indices: 37628216--37628246 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
37628206 CCAACCTTCA
37628216 AATTTTACCTCAATT
1 AATTTTACCTCAATT
37628231 AATTTTACCTCAATT
1 AATTTTACCTCAATT
37628246 A
1 A
37628247 TACATAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.35, C:0.19, G:0.00, T:0.45
Consensus pattern (15 bp):
AATTTTACCTCAATT
Found at i:37630506 original size:11 final size:11
Alignment explanation
Indices: 37630490--37630516 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
37630480 TAGAAATTAG
37630490 TTTGTGAAACT
1 TTTGTGAAACT
37630501 TTTGTGAAACT
1 TTTGTGAAACT
37630512 TTTGT
1 TTTGT
37630517 ATTGATTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.22, C:0.07, G:0.19, T:0.52
Consensus pattern (11 bp):
TTTGTGAAACT
Found at i:37632045 original size:93 final size:92
Alignment explanation
Indices: 37631913--37632107 Score: 286
Period size: 93 Copynumber: 2.1 Consensus size: 92
37631903 TTGATTTTAG
* *
37631913 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCACTA-TATAATTA
1 TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTA-AATTA
* *
37631977 TATTTAAT-ATTAATTATTTTAAATTGTA
65 TATGTAATAATT-ATTATTTTAAATTATA
* *
37632005 TAAATTCATATAAGAAAATTTTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTA
1 TAAATTCATATAAGAAAA-TTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTA
37632070 TATGTAATAATTATTATTTTAAATTATA
65 TATGTAATAATTATTATTTTAAATTATA
*
37632098 CAAATTCATA
1 TAAATTCATA
37632108 AACTATAATC
Statistics
Matches: 93, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
92 17 0.18
93 71 0.76
94 5 0.05
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (92 bp):
TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTAT
ATGTAATAATTATTATTTTAAATTATA
Found at i:37632165 original size:17 final size:17
Alignment explanation
Indices: 37632140--37632173 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
37632130 ATAATTTTAA
*
37632140 ATTTTATTAAATCATAT
1 ATTTAATTAAATCATAT
37632157 ATTTAATTAAATCATAT
1 ATTTAATTAAATCATAT
37632174 TTAATATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTTAATTAAATCATAT
Found at i:37632175 original size:15 final size:16
Alignment explanation
Indices: 37632140--37632178 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
37632130 ATAATTTTAA
*
37632140 ATTTTATTAAATCATAT
1 ATTTAATTAAATCA-AT
37632157 ATTTAATTAAATC-AT
1 ATTTAATTAAATCAAT
37632172 ATTTAAT
1 ATTTAAT
37632179 ATTAATTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 9 0.43
17 12 0.57
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (16 bp):
ATTTAATTAAATCAAT
Found at i:37632182 original size:17 final size:18
Alignment explanation
Indices: 37632144--37632183 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
37632134 TTTTAAATTT
*
37632144 TATTAAATCATATATTTA
1 TATTAAATCATATATTAA
37632162 -ATTAAATCATAT-TTAA
1 TATTAAATCATATATTAA
37632178 TATTAA
1 TATTAA
37632184 TTATTTGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 3 0.15
17 17 0.85
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (18 bp):
TATTAAATCATATATTAA
Found at i:37632298 original size:15 final size:15
Alignment explanation
Indices: 37632263--37632397 Score: 70
Period size: 15 Copynumber: 8.9 Consensus size: 15
37632253 TTAAGAATTT
*
37632263 TATTAAATTAT-ATA
1 TATTTAATTATAATA
37632277 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
37632291 TATTTAATAATAAT-
1 TATTTAATTATAATA
37632305 TATGTTAATT-T-ATA
1 TAT-TTAATTATAATA
* *
37632319 T-TTTACAGTATCATA
1 TATTTA-ATTATAATA
*
37632334 TATTATGATTTGAGTAAATTCA
1 TATT-T-AATT-A-T-AA-T-A
*
37632356 TATTAAATTAT-ATA
1 TATTTAATTATAATA
37632370 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
37632384 TATTTAATAATAAT
1 TATTTAATTATAAT
37632398 TATGTTTAAA
Statistics
Matches: 93, Mismatches: 11, Indels: 33
0.68 0.08 0.24
Matches are distributed among these distances:
12 3 0.03
13 21 0.23
14 17 0.18
15 32 0.34
16 3 0.03
17 2 0.02
18 3 0.03
19 2 0.02
20 4 0.04
21 1 0.01
22 5 0.05
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:37632305 original size:120 final size:119
Alignment explanation
Indices: 37632139--37632357 Score: 345
Period size: 120 Copynumber: 1.8 Consensus size: 119
37632129 AATAATTTTA
* *
37632139 AATTTTATTAAATCATATATTTAATTAAATCATATTTAATATTAATTAT-TTGAAATTT-TCTTT
1 AATTTTATTAAATCATATATTTAATTAAATCATATTTAATAATAATTATGTT--AATTTATATTT
*
37632202 TATAGTATCATATATTATGATTTGAGTAAATTCATAGAAGAATTTTATTTATTAAG
64 TACAGTATCATATATTATGATTTGAGTAAATTCATAGAAGAATTTTATTTATTAAG
*
37632258 AATTTTATTAAATTATATATTTTAATTATAAT-ATATTTAATAATAATTATGTTAATTTATATTT
1 AATTTTATTAAATCATATA-TTTAATTA-AATCATATTTAATAATAATTATGTTAATTTATATTT
37632322 TACAGTATCATATATTATGATTTGAGTAAATTCATA
64 TACAGTATCATATATTATGATTTGAGTAAATTCATA
37632358 TTAAATTATA
Statistics
Matches: 92, Mismatches: 4, Indels: 7
0.89 0.04 0.07
Matches are distributed among these distances:
119 23 0.25
120 64 0.70
121 5 0.05
ACGTcount: A:0.40, C:0.04, G:0.06, T:0.50
Consensus pattern (119 bp):
AATTTTATTAAATCATATATTTAATTAAATCATATTTAATAATAATTATGTTAATTTATATTTTA
CAGTATCATATATTATGATTTGAGTAAATTCATAGAAGAATTTTATTTATTAAG
Found at i:37632386 original size:16 final size:16
Alignment explanation
Indices: 37632365--37632406 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
37632355 ATATTAAATT
*
37632365 ATATATTTTAATTATA
1 ATATATTTTAATAATA
37632381 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
37632396 AT-TATGTTTAA
1 ATATAT-TTTAA
37632407 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:37632514 original size:154 final size:156
Alignment explanation
Indices: 37632356--37632653 Score: 546
Period size: 154 Copynumber: 1.9 Consensus size: 156
37632346 AGTAAATTCA
*
37632356 TATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAATATGATTAAATTA
1 TATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAATTA
37632421 TTTATTATTGAT-AT-TAATCTTATTAAAATTTAAATAACAATAACAATAATAATTTACCAAAAC
66 TTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAACAATAATAATTTACCAAAAC
37632484 AAATTTATGCTAATTATTAAGAATTT
131 AAATTTATGCTAATTATTAAGAATTT
37632510 TATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAATTA
1 TATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAATTA
*
37632575 TTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAATAATCATTTACCAAAA
66 TTTATTATTGATAAT-ATAATCTTATTAAAATTTAAATAACAATAACAATAATAATTTACCAAAA
*
37632640 CAAATTTCTGCTAA
130 CAAATTTATGCTAA
37632654 GGGTATTCTA
Statistics
Matches: 138, Mismatches: 3, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
154 76 0.55
155 2 0.01
157 60 0.43
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.44
Consensus pattern (156 bp):
TATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAATTA
TTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAACAATAATAATTTACCAAAAC
AAATTTATGCTAATTATTAAGAATTT
Found at i:37632534 original size:18 final size:17
Alignment explanation
Indices: 37632506--37632540 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
37632496 ATTATTAAGA
*
37632506 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
37632523 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
37632541 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:37632805 original size:16 final size:16
Alignment explanation
Indices: 37632786--37632826 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
37632776 ACACAGCTTT
*
37632786 TCCATTACACCTATAA
1 TCCAATACACCTATAA
*
37632802 TCCAATACACCTCTAA
1 TCCAATACACCTATAA
37632818 TCCAATACA
1 TCCAATACA
37632827 GCGAACCAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.39, C:0.34, G:0.00, T:0.27
Consensus pattern (16 bp):
TCCAATACACCTATAA
Found at i:37636962 original size:9 final size:9
Alignment explanation
Indices: 37636948--37636972 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
37636938 CAATCCCTAG
37636948 CAACAACGC
1 CAACAACGC
37636957 CAACAACGC
1 CAACAACGC
37636966 CAACAAC
1 CAACAAC
37636973 TTGATTGCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.48, C:0.44, G:0.08, T:0.00
Consensus pattern (9 bp):
CAACAACGC
Found at i:37659394 original size:74 final size:72
Alignment explanation
Indices: 37659273--37659408 Score: 218
Period size: 74 Copynumber: 1.9 Consensus size: 72
37659263 TACAAAGATA
* *
37659273 AAAATGCAAGAAAAGTAAAAAAGACAAGAGAAGCCAGAGTAAATGCTAAGTAATTTCTATTACTC
1 AAAATGAAAGAAAAGTAAAAAAGACAAGAGAAGCAAGAGTAAATGCTAAGTAATTTCTATTACTC
37659338 AACAATT
66 AACAATT
* *
37659345 AAAATGAAAGAATAGTAAAAAAAAGACAAGAGAAGCAAGAGTAATTGCTAAGTAATTTCTATTA
1 AAAATGAAAGAAAAGT--AAAAAAGACAAGAGAAGCAAGAGTAAATGCTAAGTAATTTCTATTA
37659409 AAATGCAAGA
Statistics
Matches: 58, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
72 14 0.24
74 44 0.76
ACGTcount: A:0.53, C:0.10, G:0.16, T:0.21
Consensus pattern (72 bp):
AAAATGAAAGAAAAGTAAAAAAGACAAGAGAAGCAAGAGTAAATGCTAAGTAATTTCTATTACTC
AACAATT
Found at i:37659413 original size:63 final size:60
Alignment explanation
Indices: 37659342--37659468 Score: 191
Period size: 60 Copynumber: 2.1 Consensus size: 60
37659332 TTACTCAACA
* *
37659342 ATTAAAATGAAAGAATAGTAAAAAAAAGACAAGAGAAGCAAGAGTAATTGCTAAGTAATTTCT
1 ATTAAAATGAAAGAACAGT---AAAAAGACAAGAGAAGCAAGAGTAAATGCTAAGTAATTTCT
* *
37659405 ATTAAAATGCAAGAACAGTAAAAAGACAAGAGAAGCCAGAGTAAATGCTAAGTAATTTCT
1 ATTAAAATGAAAGAACAGTAAAAAGACAAGAGAAGCAAGAGTAAATGCTAAGTAATTTCT
37659465 ATTA
1 ATTA
37659469 CTCAAGAATG
Statistics
Matches: 60, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
60 43 0.72
63 17 0.28
ACGTcount: A:0.52, C:0.09, G:0.17, T:0.22
Consensus pattern (60 bp):
ATTAAAATGAAAGAACAGTAAAAAGACAAGAGAAGCAAGAGTAAATGCTAAGTAATTTCT
Found at i:37663822 original size:43 final size:43
Alignment explanation
Indices: 37663721--37663903 Score: 151
Period size: 43 Copynumber: 4.3 Consensus size: 43
37663711 TCCCGGACTT
* * * * *
37663721 GGTCTTACATGTAATCAAATAATGAAGCCATTGTCCCAGACAG
1 GGTCTTACACGTAATTAAATAACGATGCCACTGTCCCAGACAG
* *
37663764 GGTTTTACATGTAATTAAATAACGATGCCACTGTCCCAGACAG
1 GGTCTTACACGTAATTAAATAACGATGCCACTGTCCCAGACAG
* ** * * **
37663807 GGTCTTACACGTAATTATAT-ACGACACCAATATCCCAGACTT
1 GGTCTTACACGTAATTAAATAACGATGCCACTGTCCCAGACAG
*
37663849 GGTCTTACACGTAAATCTCAAATTA--ATGCCAAC-GTCCCAGAC-G
1 GGTCTTACACGT-AAT-T-AAATAACGATGCC-ACTGTCCCAGACAG
37663892 TGGTCTTACACG
1 -GGTCTTACACG
37663904 AAGTCACAAT
Statistics
Matches: 114, Mismatches: 20, Indels: 11
0.79 0.14 0.08
Matches are distributed among these distances:
42 28 0.25
43 58 0.51
44 23 0.20
45 4 0.04
46 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (43 bp):
GGTCTTACACGTAATTAAATAACGATGCCACTGTCCCAGACAG
Found at i:37669674 original size:25 final size:25
Alignment explanation
Indices: 37669636--37669732 Score: 110
Period size: 25 Copynumber: 3.9 Consensus size: 25
37669626 GTATGCTTTC
*
37669636 ACGAGCTGTA-AATCGGTAAGCTCAT
1 ACGAGCTG-AGAATCGATAAGCTCAT
* *
37669661 ATGAACTGAGAATCGATAAGCTC-T
1 ACGAGCTGAGAATCGATAAGCTCAT
37669685 CACGAGCTGA-AATCGATAAGCTCAT
1 -ACGAGCTGAGAATCGATAAGCTCAT
* *
37669710 ACGAGTTGAGAATCGGTAAGCTC
1 ACGAGCTGAGAATCGATAAGCTC
37669733 TCATGAGCTA
Statistics
Matches: 61, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
24 23 0.38
25 38 0.62
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.23
Consensus pattern (25 bp):
ACGAGCTGAGAATCGATAAGCTCAT
Found at i:37669720 original size:49 final size:49
Alignment explanation
Indices: 37669620--37669748 Score: 168
Period size: 49 Copynumber: 2.6 Consensus size: 49
37669610 TATGAGCTAC
* * * *
37669620 GAATCGGTATGCTTTCACGAGCTGTAAATCGGTAAGCTCATATGAACTGA
1 GAATCGGTAAGCTCTCACGAGCTG-AAATCGATAAGCTCATACGAACTGA
* **
37669670 GAATCGATAAGCTCTCACGAGCTGAAATCGATAAGCTCATACGAGTTGA
1 GAATCGGTAAGCTCTCACGAGCTGAAATCGATAAGCTCATACGAACTGA
* *
37669719 GAATCGGTAAGCTCTCATGAGCTAAAATCG
1 GAATCGGTAAGCTCTCACGAGCTGAAATCG
37669749 GTAATCCCTA
Statistics
Matches: 69, Mismatches: 10, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
49 48 0.70
50 21 0.30
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25
Consensus pattern (49 bp):
GAATCGGTAAGCTCTCACGAGCTGAAATCGATAAGCTCATACGAACTGA
Found at i:37686570 original size:27 final size:27
Alignment explanation
Indices: 37686539--37686716 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
37686529 TAAATTGTAC
37686539 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
37686566 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37686592 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
37686620 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
37686648 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37686675 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
37686702 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
37686717 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:37686653 original size:82 final size:81
Alignment explanation
Indices: 37686540--37686695 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
37686530 AAATTGTACA
* *
37686540 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
37686604 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
37686621 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
37686686 TGCGAGTTGA
65 TGCGAATTGA
37686696 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:37686707 original size:82 final size:81
Alignment explanation
Indices: 37686536--37686716 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
37686526 GATTAAATTG
* *
37686536 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
37686601 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
37686617 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
37686681 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
37686699 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
37686717 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:37694708 original size:27 final size:27
Alignment explanation
Indices: 37694669--37694847 Score: 182
Period size: 27 Copynumber: 6.6 Consensus size: 27
37694659 TAAATTGTAC
*
37694669 AGCAC-AAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
37694695 TGCACTAAGTGTGCGAAATGAAATATG-
1 AGCACTAAGTGTGCGAATTG-ACTATGT
* *
37694722 ATGCACTAAGTGTGCGAATTGACCATGCC
1 A-GCACTAAGTGTGCGAATTGACTATG-T
* *
37694751 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
37694778 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
37694805 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
37694832 AGCACTGAGTGTGCGA
1 AGCACTAAGTGTGCGA
37694848 CTCAATTACA
Statistics
Matches: 128, Mismatches: 20, Indels: 9
0.82 0.13 0.06
Matches are distributed among these distances:
26 4 0.03
27 78 0.61
28 46 0.36
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:37694820 original size:54 final size:54
Alignment explanation
Indices: 37694669--37694847 Score: 200
Period size: 55 Copynumber: 3.3 Consensus size: 54
37694659 TAAATTGTAC
* **
37694669 AGCAC-AAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTG-AATATGT
* * ** *
37694722 ATGCACTAAGTGTGCGAATTGACCATGCCGGCACTAAGTGTGCGAGTTGACTATGT
1 A-GCACTAAGTGTGCGATTTGACTATG-TAGCACTAAGTGTGCGAGTTGAATATGT
* * * *
37694778 AGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGT
*
37694832 AGCACTGAGTGTGCGA
1 AGCACTAAGTGTGCGA
37694848 CTCAATTACA
Statistics
Matches: 106, Mismatches: 16, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
53 1 0.01
54 43 0.41
55 44 0.42
56 18 0.17
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (54 bp):
AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGT
Found at i:37694855 original size:27 final size:27
Alignment explanation
Indices: 37694752--37694858 Score: 115
Period size: 27 Copynumber: 4.0 Consensus size: 27
37694742 GACCATGCCG
* * **
37694752 GCACTAAGTGTGCGAGTTGACTATGTA
1 GCACTAAGTGTGCGACTTGATTACATA
* *
37694779 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGACTTGATTACATA
* *
37694806 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTGATTACATA
* **
37694833 GCACTGAGTGTGCGACTCAATTACAT
1 GCACTAAGTGTGCGACTTGATTACAT
37694859 TCGTGAATCA
Statistics
Matches: 69, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 69 1.00
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTGATTACATA
Found at i:37720306 original size:39 final size:39
Alignment explanation
Indices: 37720262--37720359 Score: 153
Period size: 39 Copynumber: 2.5 Consensus size: 39
37720252 ATTTAAGGAA
37720262 AATGTGATAAAAATTACTAAATAAAATAAAGCATAAATT
1 AATGTGATAAAAATTACTAAATAAAATAAAGCATAAATT
*
37720301 AATGTGATAAAAATTAATAAATAAAATAAAGCATAAATT
1 AATGTGATAAAAATTACTAAATAAAATAAAGCATAAATT
* *
37720340 AA-GTAAAAAAAATTAGCTAA
1 AATGTGATAAAAATTA-CTAA
37720360 TGGAATGAAA
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
38 11 0.20
39 43 0.80
ACGTcount: A:0.61, C:0.04, G:0.08, T:0.27
Consensus pattern (39 bp):
AATGTGATAAAAATTACTAAATAAAATAAAGCATAAATT
Found at i:37725547 original size:14 final size:14
Alignment explanation
Indices: 37725524--37725560 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
37725514 CAATATATCA
*
37725524 TGGTCATTCATTAT
1 TGGTCGTTCATTAT
*
37725538 TGGTTGTTCATTAT
1 TGGTCGTTCATTAT
37725552 TGGTCGTTC
1 TGGTCGTTC
37725561 CTGAGCTCTC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.14, C:0.14, G:0.22, T:0.51
Consensus pattern (14 bp):
TGGTCGTTCATTAT
Found at i:37732053 original size:37 final size:37
Alignment explanation
Indices: 37732012--37732113 Score: 127
Period size: 37 Copynumber: 2.7 Consensus size: 37
37732002 TGAACATCAG
*
37732012 TCAGTATATCGATAAGATTTGCTC-AGTTAAGC-TCAAT
1 TCAGTATAACGATAAGATTTGCTCGA-TTAAGCTTC-AT
* *
37732049 TCAGTATAACGATATGACTTGCTCGATTAAGCTTCAT
1 TCAGTATAACGATAAGATTTGCTCGATTAAGCTTCAT
*
37732086 TCAGTATAACAATAAGATTTGGCTCGAT
1 TCAGTATAACGATAAGATTT-GCTCGAT
37732114 AGAGCATATT
Statistics
Matches: 56, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
37 46 0.82
38 10 0.18
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (37 bp):
TCAGTATAACGATAAGATTTGCTCGATTAAGCTTCAT
Found at i:37735952 original size:40 final size:38
Alignment explanation
Indices: 37735908--37736087 Score: 152
Period size: 40 Copynumber: 4.6 Consensus size: 38
37735898 AGCTACCGTT
*
37735908 CAAATGCCTTCGGGTCATAGCCCGTTTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCG-TTATAGTAACTCGCA
*
37735948 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCC-G-TTATAGTAACTCGCA
** *
37735988 CAAATGCCTTC-GGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGTTA-TAGTAACTCGCA
* * * * *
37736026 CAAATGCCTTCGGATCTTAGTCCG-GATATGTCACTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGTTATA-GTAAC-TCGCA
*
37736066 CAAA-GCCTTCGGACTTAGCCCG
1 CAAATGCCTTCGGGCTTAGCCCG
37736088 GAAATCATTC
Statistics
Matches: 117, Mismatches: 16, Indels: 16
0.79 0.11 0.11
Matches are distributed among these distances:
37 1 0.01
38 39 0.33
39 15 0.13
40 59 0.50
41 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (38 bp):
CAAATGCCTTCGGGCTTAGCCCGTTATAGTAACTCGCA
Found at i:37736007 original size:78 final size:79
Alignment explanation
Indices: 37735936--37736090 Score: 210
Period size: 78 Copynumber: 2.0 Consensus size: 79
37735926 AGCCCGTTTA
* *
37735936 TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCACAAATGCCTTC
1 TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGGATAT-GTAACTTAGCACAAATGCCTTC
37735999 GG-CTTAGCCCGGAAT
64 GGACTTAGCCCGGAAT
* ** *
37736014 TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGATATGTCACTTAGCACAAA-GCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATGTAACTTAGCACAAATGCCTTCGG
37736078 ACTTAGCCCGGAA
66 ACTTAGCCCGGAA
37736091 ATCATTCGAA
Statistics
Matches: 68, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
77 15 0.22
78 53 0.78
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATGTAACTTAGCACAAATGCCTTCGG
ACTTAGCCCGGAAT
Found at i:37736024 original size:38 final size:39
Alignment explanation
Indices: 37735936--37736090 Score: 192
Period size: 38 Copynumber: 4.0 Consensus size: 39
37735926 AGCCCGTTTA
* *
37735936 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATT
1 TAGTAACTCGCACAAATGCCTTC-GGACTTAGCCCGGAAT
37735976 TAGTAACTCGCACAAATGCCTTCGG-CTTAGCCCGGAAT
1 TAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGGAAT
* *
37736014 TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG-A-
1 TAGTAACTCGCACAAATGCCTTCGGA-CTTAGCCCGGAAT
* *
37736052 TATGTCACTTAGCACAAA-GCCTTCGGACTTAGCCCGGAA
1 TA-GTAAC-TCGCACAAATGCCTTCGGACTTAGCCCGGAA
37736091 ATCATTCGAA
Statistics
Matches: 102, Mismatches: 8, Indels: 11
0.84 0.07 0.09
Matches are distributed among these distances:
38 46 0.45
39 16 0.16
40 40 0.39
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
TAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGGAAT
Found at i:37737372 original size:55 final size:56
Alignment explanation
Indices: 37737215--37737381 Score: 311
Period size: 56 Copynumber: 3.0 Consensus size: 56
37737205 TATTAGTTTA
*
37737215 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
37737271 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
37737327 TTGCCCATGCTTCTTA-TTTATTTTTCCATTAACACAACATGTTTCATGA-ATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
37737381 T
1 T
37737382 GCCATCATCC
Statistics
Matches: 110, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
54 6 0.05
55 33 0.30
56 71 0.65
ACGTcount: A:0.23, C:0.22, G:0.09, T:0.46
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:37743289 original size:78 final size:81
Alignment explanation
Indices: 37743168--37743349 Score: 230
Period size: 78 Copynumber: 2.3 Consensus size: 81
37743158 TACTCGTTCA
* *
37743168 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
37743231 ATTTAGTAAC-TCGCAC
65 ATATAGTAACTTAGCAC
* **
37743247 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
37743310 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
37743326 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
37743350 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
77 3 0.03
78 46 0.52
79 29 0.33
80 11 0.12
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:37743349 original size:40 final size:40
Alignment explanation
Indices: 37743147--37743349 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
37743137 CGGAATTTAA
** *
37743147 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
37743187 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
37743227 CCGGATTTAGTAACTCGCAC-AATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
37743265 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
37743305 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
37743345 CCGGA
1 CCGGA
37743350 CATCATTCGA
Statistics
Matches: 139, Mismatches: 16, Indels: 16
0.81 0.09 0.09
Matches are distributed among these distances:
38 24 0.17
39 22 0.16
40 81 0.58
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:37744544 original size:56 final size:56
Alignment explanation
Indices: 37744477--37744652 Score: 343
Period size: 56 Copynumber: 3.1 Consensus size: 56
37744467 TATTAGTTTA
*
37744477 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
37744533 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
37744589 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
37744645 TTGCCCAT
1 TTGCCCAT
37744653 CACCCCTTGT
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 119 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:37745704 original size:21 final size:20
Alignment explanation
Indices: 37745655--37745705 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
37745645 CAAATACACC
** *
37745655 AACAGAAGCTCGTGAGAGTG
1 AACAGAAGCTAATGAGAGAG
*
37745675 AACAAAAGCTAATGAGAGCAG
1 AACAGAAGCTAATGAGAG-AG
37745696 AACAGAAGCT
1 AACAGAAGCT
37745706 CAAAAGAGCT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 15 0.60
21 10 0.40
ACGTcount: A:0.45, C:0.16, G:0.27, T:0.12
Consensus pattern (20 bp):
AACAGAAGCTAATGAGAGAG
Found at i:37745734 original size:21 final size:21
Alignment explanation
Indices: 37745655--37745734 Score: 81
Period size: 21 Copynumber: 3.9 Consensus size: 21
37745645 CAAATACACC
*
37745655 AACAGAAGCTCGTGAGAG-TG
1 AACAGAAGCTCATGAGAGCTG
* * *
37745675 AACAAAAGCTAATGAGAGCAG
1 AACAGAAGCTCATGAGAGCTG
** *
37745696 AACAGAAGCTCAAAAGAGCTT
1 AACAGAAGCTCATGAGAGCTG
*
37745717 AACAGAAGCTCGTGAGAG
1 AACAGAAGCTCATGAGAG
37745735 TTGATCCACC
Statistics
Matches: 46, Mismatches: 13, Indels: 1
0.77 0.22 0.02
Matches are distributed among these distances:
20 15 0.33
21 31 0.67
ACGTcount: A:0.44, C:0.16, G:0.28, T:0.12
Consensus pattern (21 bp):
AACAGAAGCTCATGAGAGCTG
Found at i:37750655 original size:32 final size:32
Alignment explanation
Indices: 37750619--37750683 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
37750609 TTGGGCTTCG
37750619 GAGCATTTCGTACACTTCCCACACTATCAGCA
1 GAGCATTTCGTACACTTCCCACACTATCAGCA
37750651 GAGCATTTCGTACACTTCCCACACTATCAGCA
1 GAGCATTTCGTACACTTCCCACACTATCAGCA
37750683 G
1 G
37750684 GTTTAGTAGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.28, C:0.34, G:0.14, T:0.25
Consensus pattern (32 bp):
GAGCATTTCGTACACTTCCCACACTATCAGCA
Found at i:37753613 original size:79 final size:78
Alignment explanation
Indices: 37753512--37753735 Score: 263
Period size: 79 Copynumber: 2.8 Consensus size: 78
37753502 GCTACTCGTT
* *
37753512 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCTGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
*
37753577 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
* * *
37753592 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
*
37753656 ATTAGTATCTCGCA
65 ATTAGTAACTCGCA
* * * * * *
37753670 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCG
37753734 GA
63 GA
37753736 CATCATTCAA
Statistics
Matches: 125, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
78 35 0.28
79 56 0.45
80 34 0.27
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAA
TTAGTAACTCGCA
Found at i:37753633 original size:39 final size:40
Alignment explanation
Indices: 37753512--37753735 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
37753502 GCTACTCGTT
* *
37753512 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* * *
37753552 CAAATGCCTTCGGGACTTAACCTGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
37753592 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
37753631 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * * *
37753670 CAAATGCCTTC-GGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCA
37753711 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37753736 CATCATTCAA
Statistics
Matches: 164, Mismatches: 13, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
38 2 0.01
39 73 0.45
40 76 0.46
41 13 0.08
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:37756257 original size:21 final size:21
Alignment explanation
Indices: 37756228--37756270 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
37756218 TGAATACGCC
37756228 AACAAAAGCTCGTAAGAGCTG
1 AACAAAAGCTCGTAAGAGCTG
*
37756249 AACAGAAGCTCGTAAGAGCTG
1 AACAAAAGCTCGTAAGAGCTG
37756270 A
1 A
37756271 TCCTCCCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.42, C:0.19, G:0.26, T:0.14
Consensus pattern (21 bp):
AACAAAAGCTCGTAAGAGCTG
Found at i:37758446 original size:13 final size:13
Alignment explanation
Indices: 37758428--37758453 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
37758418 CTAGTTCATA
37758428 GAATAAAAGAGGT
1 GAATAAAAGAGGT
37758441 GAATAAAAGAGGT
1 GAATAAAAGAGGT
37758454 AGAGAAGATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.31, T:0.15
Consensus pattern (13 bp):
GAATAAAAGAGGT
Found at i:37764022 original size:10 final size:10
Alignment explanation
Indices: 37764007--37764053 Score: 78
Period size: 10 Copynumber: 4.7 Consensus size: 10
37763997 AAAAAAAATA
37764007 ATTTTTTTAT
1 ATTTTTTTAT
37764017 ATTTTTTTAT
1 ATTTTTTTAT
37764027 ATATTTTTTA-
1 AT-TTTTTTAT
37764037 ATTTTTTTAT
1 ATTTTTTTAT
37764047 ATTTTTT
1 ATTTTTT
37764054 AAAATAAATT
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
9 7 0.20
10 21 0.60
11 7 0.20
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (10 bp):
ATTTTTTTAT
Found at i:37765416 original size:71 final size:71
Alignment explanation
Indices: 37765318--37765479 Score: 225
Period size: 71 Copynumber: 2.3 Consensus size: 71
37765308 ACTGTGTTGT
* * * * *
37765318 AAAATACCGCAAACTATATTTACAGAAATGCCGCAAAATGTATTGTAGAATTACTGTGAACTGCA
1 AAAATACTGCAAACTGTATTTACAGAAATGCCACAAAATATATTGTAGAATTACTATGAACTGCA
37765383 TTTACA
66 TTTACA
* ** * *
37765389 AAAATATTGTGAACTGTATTTATAGAAATGCCACAAAATATATTGTAGAATTACTATGAACTGTA
1 AAAATACTGCAAACTGTATTTACAGAAATGCCACAAAATATATTGTAGAATTACTATGAACTGCA
37765454 TTTACA
66 TTTACA
*
37765460 GAAATACTGCAAACTGTATT
1 AAAATACTGCAAACTGTATT
37765480 GTAATACCCA
Statistics
Matches: 77, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
71 77 1.00
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.31
Consensus pattern (71 bp):
AAAATACTGCAAACTGTATTTACAGAAATGCCACAAAATATATTGTAGAATTACTATGAACTGCA
TTTACA
Found at i:37765474 original size:24 final size:24
Alignment explanation
Indices: 37765319--37765479 Score: 69
Period size: 24 Copynumber: 6.8 Consensus size: 24
37765309 CTGTGTTGTA
* *
37765319 AAATACCGCAAACTATATTTACAG
1 AAATACTGCAAACTGTATTTACAG
* * *
37765343 AAATGCCGCAAAATGTATTGT--AG
1 AAATACTGCAAACTGTATT-TACAG
* ** * *
37765366 AATTACTGTGAACTGCATTTACAA
1 AAATACTGCAAACTGTATTTACAG
* ** *
37765390 AAATATTGTGAACTGTATTTATAG
1 AAATACTGCAAACTGTATTTACAG
* ** * *
37765414 AAATGCCACAAAATATATTGT--AG
1 AAATACTGCAAACTGTATT-TACAG
* ***
37765437 AATTACTATGAACTGTATTTACAG
1 AAATACTGCAAACTGTATTTACAG
37765461 AAATACTGCAAACTGTATT
1 AAATACTGCAAACTGTATT
37765480 GTAATACCCA
Statistics
Matches: 96, Mismatches: 35, Indels: 12
0.67 0.24 0.08
Matches are distributed among these distances:
22 2 0.02
23 28 0.29
24 64 0.67
25 2 0.02
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.32
Consensus pattern (24 bp):
AAATACTGCAAACTGTATTTACAG
Found at i:37779674 original size:44 final size:44
Alignment explanation
Indices: 37779611--37780081 Score: 681
Period size: 44 Copynumber: 10.7 Consensus size: 44
37779601 AAATCATAAA
37779611 CCCTAGTTCCCTGACCAGCAGTGGAATAGGTGGAAGACTGTAAG
1 CCCTAGTTCCCTGACCAGCAGTGGAATAGGTGGAAGACTGTAAG
* *
37779655 CCCTAGTTCCCTAACCAGCAGTGGAATAGGTGGAAGACTGCAAG
1 CCCTAGTTCCCTGACCAGCAGTGGAATAGGTGGAAGACTGTAAG
37779699 CCCTAGTTCCCTGACCAGCAGTGGAATAGGTGGAAGACTGTAAG
1 CCCTAGTTCCCTGACCAGCAGTGGAATAGGTGGAAGACTGTAAG
* *
37779743 CCCTAGTTCCTTGACCAGCAGTGGAATAGGTGGAAGACTGCAAG
1 CCCTAGTTCCCTGACCAGCAGTGGAATAGGTGGAAGACTGTAAG
* * *
37779787 CCCTAGTTCCCTGACTATCAGTGGAACAGGTGGAAGACTGTAAG
1 CCCTAGTTCCCTGACCAGCAGTGGAATAGGTGGAAGACTGTAAG
*
37779831 CCCTAGTTCCCTGACCAGCAGTGGAATAGGTAGAAGACTGTAAG
1 CCCTAGTTCCCTGACCAGCAGTGGAATAGGTGGAAGACTGTAAG
* *
37779875 CCCTAGTTCCCTAACCAGCAGTGGAATAGGTGGAAGATTGTAAG
1 CCCTAGTTCCCTGACCAGCAGTGGAATAGGTGGAAGACTGTAAG
** * * * * * *
37779919 TTCTAGCTCCCTGAACAGCAGTGGAATAGGCGGAATATTGTAAA
1 CCCTAGTTCCCTGACCAGCAGTGGAATAGGTGGAAGACTGTAAG
* *
37779963 TCCTAGCTCCCTGACCAGCAGTGGAATAGGTGGAAGACTGTAAG
1 CCCTAGTTCCCTGACCAGCAGTGGAATAGGTGGAAGACTGTAAG
* * * *
37780007 TCCTAGCTCCCTGACCAGCAGTGGAATAGGTAGAAGATTGTAAG
1 CCCTAGTTCCCTGACCAGCAGTGGAATAGGTGGAAGACTGTAAG
* * * * *
37780051 TCCTAGCTCCCTGAGCAGCTGTGGAGTAGGT
1 CCCTAGTTCCCTGACCAGCAGTGGAATAGGT
37780082 TGAAAATTAC
Statistics
Matches: 390, Mismatches: 37, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 390 1.00
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (44 bp):
CCCTAGTTCCCTGACCAGCAGTGGAATAGGTGGAAGACTGTAAG
Found at i:37780976 original size:17 final size:16
Alignment explanation
Indices: 37780954--37780995 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 16
37780944 AGGTAATTGT
37780954 TTTA-TTTATTTGTTTAC
1 TTTATTTTATTT-TTT-C
37780971 TTTATTTTATTTTTTC
1 TTTATTTTATTTTTTC
37780987 TTTAGTTTT
1 TTTA-TTTT
37780996 CGGTCGGGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 5 0.22
17 11 0.48
18 7 0.30
ACGTcount: A:0.14, C:0.05, G:0.05, T:0.76
Consensus pattern (16 bp):
TTTATTTTATTTTTTC
Found at i:37782255 original size:18 final size:18
Alignment explanation
Indices: 37782215--37782275 Score: 52
Period size: 18 Copynumber: 3.2 Consensus size: 18
37782205 TTTTGCTAAC
37782215 ATTATTATATATATATATATAT
1 ATTATTAT-TATAT-T-T-TAT
*
37782237 ATCTA-TATTATCTTTTAT
1 AT-TATTATTATATTTTAT
*
37782255 ATTATTATTATATTTTTT
1 ATTATTATTATATTTTAT
37782273 ATT
1 ATT
37782276 TACTACGTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
17 2 0.06
18 19 0.56
19 1 0.03
20 1 0.03
21 4 0.12
22 5 0.15
23 2 0.06
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.62
Consensus pattern (18 bp):
ATTATTATTATATTTTAT
Found at i:37783602 original size:54 final size:54
Alignment explanation
Indices: 37783372--37783603 Score: 277
Period size: 54 Copynumber: 4.3 Consensus size: 54
37783362 GCAAAAGGAC
* *
37783372 GTGATCGTAAATCAGCGGACTGTGAGATTCGTAAAATCCCGTAAGTAAAAGGTT
1 GTGATCATAAATCAGCGGACTGCGAGATTCGTAAAATCCCGTAAGTAAAAGGTT
** ** * * *
37783426 GTGATTTTAAATCAATGGACTGCAAGATTCGTAAAATCCCGTAAGTAAAAGATC
1 GTGATCATAAATCAGCGGACTGCGAGATTCGTAAAATCCCGTAAGTAAAAGGTT
* ** * * *
37783480 GTGATCATAAATCAACATA-TCACGAGATTCGTAAAATCTCATAAGTAAAAGGTT
1 GTGATCATAAATCAGCGGACT-GCGAGATTCGTAAAATCCCGTAAGTAAAAGGTT
* * **
37783534 GTGATCATAAATCAGCGGACTGTGAGATTCATAAAATCTTGTAAGTAAAAGGTT
1 GTGATCATAAATCAGCGGACTGCGAGATTCGTAAAATCCCGTAAGTAAAAGGTT
37783588 GTGATCATAAATCAGC
1 GTGATCATAAATCAGC
37783604 AAACCATAAG
Statistics
Matches: 149, Mismatches: 27, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
53 1 0.01
54 147 0.99
55 1 0.01
ACGTcount: A:0.38, C:0.14, G:0.20, T:0.28
Consensus pattern (54 bp):
GTGATCATAAATCAGCGGACTGCGAGATTCGTAAAATCCCGTAAGTAAAAGGTT
Found at i:37783638 original size:39 final size:39
Alignment explanation
Indices: 37783582--37783804 Score: 232
Period size: 39 Copynumber: 5.7 Consensus size: 39
37783572 TTGTAAGTAA
* * *
37783582 AAGGTTGTGATCATAAATCAGCAAACCATAAGAAAGTCG
1 AAGGTCGTGATCGTAAATCAGCAAACCATAAGAAAGCCG
* * *
37783621 AAGGTCGTGATCGTAAATCAGCAGACTATAAGAAAGCCA
1 AAGGTCGTGATCGTAAATCAGCAAACCATAAGAAAGCCG
*
37783660 AAGGTCGTGATCGTAAACCAGCAAACCATAAGAAAGCCG
1 AAGGTCGTGATCGTAAATCAGCAAACCATAAGAAAGCCG
* * * * * *
37783699 -ATGACTGTGACCGTAAATCAACAGACCATAAGAAAGCCA
1 AAGGTC-GTGATCGTAAATCAGCAAACCATAAGAAAGCCG
* * * ****
37783738 AAGTTTGTGATCGTAAATCAACGGGTCATAAGAAAGCCG
1 AAGGTCGTGATCGTAAATCAGCAAACCATAAGAAAGCCG
* *
37783777 AAGGTCGTGGTCATAAATCAGCAAACCA
1 AAGGTCGTGATCGTAAATCAGCAAACCA
37783805 CGAAATTCAT
Statistics
Matches: 147, Mismatches: 35, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
38 3 0.02
39 143 0.97
40 1 0.01
ACGTcount: A:0.41, C:0.19, G:0.22, T:0.18
Consensus pattern (39 bp):
AAGGTCGTGATCGTAAATCAGCAAACCATAAGAAAGCCG
Found at i:37783872 original size:54 final size:54
Alignment explanation
Indices: 37783777--37783959 Score: 224
Period size: 54 Copynumber: 3.4 Consensus size: 54
37783767 AAGAAAGCCG
* * * *
37783777 AAGGTCGTGGTCATAAATCAGCAAACCACGAAATTCATAAAATCCCGTAAGTAA
1 AAGGTCGTGATCGTAAATCAGCAGACCACGAGATTCATAAAATCCCGTAAGTAA
* * *
37783831 AAAGTCGTGATTGTAAATCAGCAGACCACGAGATTCGTAAAATCCCGTAAGTAA
1 AAGGTCGTGATCGTAAATCAGCAGACCACGAGATTCATAAAATCCCGTAAGTAA
* ** * **
37783885 AAGGTCGTGATCGTAAATCAG-TGAACTGCGAGACTCATAAAATCTTGTAAGTAA
1 AAGGTCGTGATCGTAAATCAGCAG-ACCACGAGATTCATAAAATCCCGTAAGTAA
*
37783939 AAGGCCGTGATCGTAAATCAG
1 AAGGTCGTGATCGTAAATCAG
37783960 TGAACCATAA
Statistics
Matches: 111, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
53 1 0.01
54 110 0.99
ACGTcount: A:0.39, C:0.18, G:0.21, T:0.22
Consensus pattern (54 bp):
AAGGTCGTGATCGTAAATCAGCAGACCACGAGATTCATAAAATCCCGTAAGTAA
Found at i:37784127 original size:357 final size:357
Alignment explanation
Indices: 37783452--37784151 Score: 865
Period size: 357 Copynumber: 2.0 Consensus size: 357
37783442 GGACTGCAAG
* * *
37783452 ATTCGTAAAATCCCGTAAGTAAAAGATCGTGATCATAAATCAACATATCACGAGATTCGTAAAAT
1 ATTCATAAAATCCCGTAAGTAAAAGATCGTGATCATAAATCAACAGACCACGAGATTCGTAAAAT
* * * * *
37783517 CTCATAAGTAAAAGGTTGTGATCATAAATCAGCGGACTGTGAGATTCATAAAATCTTGTAAGTAA
66 CCCATAAGTAAAAGGTCGTGATCATAAATCAGCGAACTGCGAGACTCATAAAATCTTGTAAGTAA
** * * *
37783582 AAGGTTGTGATCATAAATCAGCAAACCATAAGAAAGTCGAAGGTCGTGATCGTAAATCAGCAGAC
131 AAGGCCGTGATCATAAATCAGCAAACCATAAGAAAGGCGAAAGTCATGATCGTAAATCAGCAGAC
* * * * *
37783647 TATAAGAAAGCCAAAGGTCGTGATCGTAAACCAGCAAACCATAAGAAAGCCGATGACTGTGACCG
196 CATAAGAAAGCCAAAGGTCATGATCGTAAACCAACAAACCATAAGAAAGCAGAGGACTGTGACCG
* **
37783712 TAAATCAACAGACCATAAGAAAGCCAAAGTTTGTGATCGTAAATCAACGGGTCATAAGAAAGCCG
261 TAAATCAACAGACCATAAGAAAGCCAAAGGTCATGATCGTAAATCAACGGGTCATAAGAAAGCCG
*
37783777 AAGGTCGTGGTCATAAATCAGCAAACCACGAA
326 AAGGTCGTGATCATAAATCAGCAAACCACGAA
** *
37783809 ATTCATAAAATCCCGTAAGTAAAA-AGTCGTGATTGTAAATCAGCAGACCACGAGATTCGTAAAA
1 ATTCATAAAATCCCGTAAGTAAAAGA-TCGTGATCATAAATCAACAGACCACGAGATTCGTAAAA
* * *
37783873 TCCCGTAAGTAAAAGGTCGTGATCGTAAATCAGTGAACTGCGAGACTCATAAAATCTTGTAAGTA
65 TCCCATAAGTAAAAGGTCGTGATCATAAATCAGCGAACTGCGAGACTCATAAAATCTTGTAAGTA
* **
37783938 AAAGGCCGTGATCGTAAATCAGTGAACCATAAGAAAGGCGAAAGTCATGATCGTAAATCA--ATG
130 AAAGGCCGTGATCATAAATCAGCAAACCATAAGAAAGGCGAAAGTCATGATCGTAAATCAGCA-G
* * ** * *
37784001 AACCGTAAGAAAGCCGAAA-GTCATGATCGTAAATCAATGAACCGTAAGAAAGTCAGAGGTC-GT
194 -ACCATAAGAAAGCC-AAAGGTCATGATCGTAAACCAACAAACCATAAGAAAG-CAGAGGACTGT
* *** * * * *
37784064 GATCGTAAATCAGTGGACCATAAGAAAGTCGAAGGTCATGATCTTAAAT-AA-GTGTACCATAAG
256 GACCGTAAATCAACAGACCATAAGAAAGCCAAAGGTCATGATCGTAAATCAACGGGT--CATAAG
* *
37784127 AAAGTCGAAGGTTGTGATCATAAAT
319 AAAGCCGAAGGTCGTGATCATAAAT
37784152 TAGCGGACTA
Statistics
Matches: 289, Mismatches: 47, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
355 4 0.01
356 4 0.01
357 273 0.94
358 8 0.03
ACGTcount: A:0.40, C:0.17, G:0.21, T:0.22
Consensus pattern (357 bp):
ATTCATAAAATCCCGTAAGTAAAAGATCGTGATCATAAATCAACAGACCACGAGATTCGTAAAAT
CCCATAAGTAAAAGGTCGTGATCATAAATCAGCGAACTGCGAGACTCATAAAATCTTGTAAGTAA
AAGGCCGTGATCATAAATCAGCAAACCATAAGAAAGGCGAAAGTCATGATCGTAAATCAGCAGAC
CATAAGAAAGCCAAAGGTCATGATCGTAAACCAACAAACCATAAGAAAGCAGAGGACTGTGACCG
TAAATCAACAGACCATAAGAAAGCCAAAGGTCATGATCGTAAATCAACGGGTCATAAGAAAGCCG
AAGGTCGTGATCATAAATCAGCAAACCACGAA
Found at i:37784136 original size:39 final size:39
Alignment explanation
Indices: 37783939--37784346 Score: 300
Period size: 39 Copynumber: 10.5 Consensus size: 39
37783929 TTGTAAGTAA
* * * *
37783939 AAGGCCGTGATCGTAAATCAGTGAACCATAAGAAAGGCG
1 AAGGTCGTGATCGTAAATAAGTGGACCATAAGAAAGTCG
* * * * *
37783978 AAAGTCATGATCGTAAATCAA-TGAACCGTAAGAAAGCCG
1 AAGGTCGTGATCGTAAAT-AAGTGGACCATAAGAAAGTCG
* * * *
37784017 AAAGTCATGATCGTAAATCAA-TGAACCGTAAGAAAGTC-
1 AAGGTCGTGATCGTAAAT-AAGTGGACCATAAGAAAGTCG
*
37784055 AGAGGTCGTGATCGTAAATCAGTGGACCATAAGAAAGTCG
1 A-AGGTCGTGATCGTAAATAAGTGGACCATAAGAAAGTCG
* * *
37784095 AAGGTCATGATCTTAAATAAGTGTACCATAAGAAAGTCG
1 AAGGTCGTGATCGTAAATAAGTGGACCATAAGAAAGTCG
* * * * * *
37784134 AAGGTTGTGATCATAAATTAGCGGACTATAAGAAAGTTG
1 AAGGTCGTGATCGTAAATAAGTGGACCATAAGAAAGTCG
* ** * * * *
37784173 AAGGCCGTGATAATAAATCAGTGGACCGTAAGAAAATCA
1 AAGGTCGTGATCGTAAATAAGTGGACCATAAGAAAGTCG
* * * * *
37784212 AAGGTCGTCATCGTAAATAAGCGGACCATAAAAAAATTG
1 AAGGTCGTGATCGTAAATAAGTGGACCATAAGAAAGTCG
* * *** * *
37784251 AAGGTCGTGATCGTAAATTAGCGGATTGTAAAAAAGTCA
1 AAGGTCGTGATCGTAAATAAGTGGACCATAAGAAAGTCG
* * * * *** ** *
37784290 AAGATCATGATCATAAATTAGCATATTATAAAAAAGTCG
1 AAGGTCGTGATCGTAAATAAGTGGACCATAAGAAAGTCG
37784329 AAGGTCGTGATCGTAAAT
1 AAGGTCGTGATCGTAAAT
37784347 CAACAAATCA
Statistics
Matches: 303, Mismatches: 62, Indels: 8
0.81 0.17 0.02
Matches are distributed among these distances:
38 2 0.01
39 299 0.99
40 2 0.01
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.22
Consensus pattern (39 bp):
AAGGTCGTGATCGTAAATAAGTGGACCATAAGAAAGTCG
Found at i:37784151 original size:117 final size:117
Alignment explanation
Indices: 37783933--37784268 Score: 352
Period size: 117 Copynumber: 2.9 Consensus size: 117
37783923 AAAATCTTGT
* * * *
37783933 AAGTAAAAGGCCGTGATCGTAAATCAGTGAACCATAAGAAAGGCGAAAGTCATGATCGTAAATCA
1 AAGTAGAAGGCCGTGATCGTAAATCAGTGGACCATAAGAAAGTCGAAGGTCATGATCGTAAAT-A
* * * * * *
37783998 A-TGAACCGTAAGAAAGCCGAAAGTCATGATCGTAAATCAATGAACCGTAAGA
65 AGTGAACCATAAGAAAGTCGAAGGTCGTGATCGTAAATCAACGAACCATAAGA
* *
37784050 AAGTCAG-AGGTCGTGATCGTAAATCAGTGGACCATAAGAAAGTCGAAGGTCATGATCTTAAATA
1 AAGT-AGAAGGCCGTGATCGTAAATCAGTGGACCATAAGAAAGTCGAAGGTCATGATCGTAAATA
* * * * * * *
37784114 AGTGTACCATAAGAAAGTCGAAGGTTGTGATCATAAATTAGCGGACTATAAGA
65 AGTGAACCATAAGAAAGTCGAAGGTCGTGATCGTAAATCAACGAACCATAAGA
* ** * * * * *
37784167 AAGTTGAAGGCCGTGATAATAAATCAGTGGACCGTAAGAAAATCAAAGGTCGTCATCGTAAATAA
1 AAGTAGAAGGCCGTGATCGTAAATCAGTGGACCATAAGAAAGTCGAAGGTCATGATCGTAAATAA
* * * * *
37784232 GCGGACCATAAAAAAATTGAAGGTCGTGATCGTAAAT
66 GTGAACCATAAGAAAGTCGAAGGTCGTGATCGTAAAT
37784269 TAGCGGATTG
Statistics
Matches: 180, Mismatches: 36, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
116 3 0.02
117 176 0.98
118 1 0.01
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (117 bp):
AAGTAGAAGGCCGTGATCGTAAATCAGTGGACCATAAGAAAGTCGAAGGTCATGATCGTAAATAA
GTGAACCATAAGAAAGTCGAAGGTCGTGATCGTAAATCAACGAACCATAAGA
Found at i:37798961 original size:41 final size:41
Alignment explanation
Indices: 37798916--37799107 Score: 330
Period size: 41 Copynumber: 4.7 Consensus size: 41
37798906 GGTTTTAAAA
*
37798916 CCTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
37798957 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
37798998 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
*
37799039 CCTAGCAGGCTAAATGCCGGTGATCTGAATCAGGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
* * *
37799080 CCTAACAAGCTAAGTGCCAGTGAATCTG
1 CCTAGCAGGCTAAGTGCCGGTG-ATCTG
37799108 TTTAAATTAA
Statistics
Matches: 144, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
41 139 0.97
42 5 0.03
ACGTcount: A:0.29, C:0.22, G:0.28, T:0.21
Consensus pattern (41 bp):
CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
Found at i:37801418 original size:24 final size:25
Alignment explanation
Indices: 37801372--37801418 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
37801362 TTACGTGCTT
*
37801372 ATTTTTAATTAGTTTTAAATAATGC
1 ATTTTTAATTAGTTGTAAATAATGC
*
37801397 ATTTTTAATTA-TTGTAATTAAT
1 ATTTTTAATTAGTTGTAAATAAT
37801419 TTTTTAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 9 0.45
25 11 0.55
ACGTcount: A:0.36, C:0.02, G:0.06, T:0.55
Consensus pattern (25 bp):
ATTTTTAATTAGTTGTAAATAATGC
Found at i:37803405 original size:20 final size:20
Alignment explanation
Indices: 37803375--37803412 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
37803365 TGATCCATGT
37803375 AATTAAAATGTATGGTATAAG
1 AATTAAAATGT-TGGTATAAG
37803396 AATT-AAATGTTGGTATA
1 AATTAAAATGTTGGTATA
37803413 TGGCATGATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 7 0.41
20 6 0.35
21 4 0.24
ACGTcount: A:0.45, C:0.00, G:0.18, T:0.37
Consensus pattern (20 bp):
AATTAAAATGTTGGTATAAG
Found at i:37805352 original size:18 final size:18
Alignment explanation
Indices: 37805326--37805374 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
37805316 CAAATATGCC
37805326 CAAGCCCAAACTAATAAA
1 CAAGCCCAAACTAATAAA
* * * *
37805344 TAGGCCCAAACCATTAAA
1 CAAGCCCAAACTAATAAA
37805362 CAAGCCCAAACTA
1 CAAGCCCAAACTA
37805375 TCCCAAGCCC
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.49, C:0.31, G:0.08, T:0.12
Consensus pattern (18 bp):
CAAGCCCAAACTAATAAA
Found at i:37808548 original size:13 final size:13
Alignment explanation
Indices: 37808530--37808554 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37808520 AAGAGATTTC
37808530 TTTTCTAGTAAAG
1 TTTTCTAGTAAAG
37808543 TTTTCTAGTAAA
1 TTTTCTAGTAAA
37808555 AAAATTGAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.12, T:0.48
Consensus pattern (13 bp):
TTTTCTAGTAAAG
Found at i:37808625 original size:19 final size:20
Alignment explanation
Indices: 37808588--37808627 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
37808578 TCTTTTCGCA
* *
37808588 TTCATTTCATGCATTTGCAT
1 TTCATTACATGCATATGCAT
37808608 TTCATTACAT-CATATGCAT
1 TTCATTACATGCATATGCAT
37808627 T
1 T
37808628 AAACACGATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.25, C:0.20, G:0.07, T:0.47
Consensus pattern (20 bp):
TTCATTACATGCATATGCAT
Found at i:37810561 original size:19 final size:20
Alignment explanation
Indices: 37810521--37810561 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
37810511 GCAAATGTTC
37810521 TTTCATTCTTTACAATTTTT
1 TTTCATTCTTTACAATTTTT
37810541 TTTCATTCTTT-CAGATTTTT
1 TTTCATTCTTTACA-ATTTTT
37810561 T
1 T
37810562 CTGCCAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 2 0.10
20 18 0.90
ACGTcount: A:0.17, C:0.15, G:0.02, T:0.66
Consensus pattern (20 bp):
TTTCATTCTTTACAATTTTT
Found at i:37811690 original size:42 final size:42
Alignment explanation
Indices: 37811629--37811740 Score: 143
Period size: 42 Copynumber: 2.7 Consensus size: 42
37811619 GAAAAGGGCG
* * *
37811629 GCTCAAATATTAATTAGAATGGGGTATGAGATTATCGAAGTA
1 GCTCAAATATTGATCAGAATGGGGCATGAGATTATCGAAGTA
* * *
37811671 GCTCAAATATTGATCAGAATGTGGCATGAGATTATTGGAGTA
1 GCTCAAATATTGATCAGAATGGGGCATGAGATTATCGAAGTA
* * *
37811713 GCTCAAATACTGATCAGCATGAGGCATG
1 GCTCAAATATTGATCAGAATGGGGCATG
37811741 CAGTGGTCTT
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 61 1.00
ACGTcount: A:0.35, C:0.12, G:0.25, T:0.29
Consensus pattern (42 bp):
GCTCAAATATTGATCAGAATGGGGCATGAGATTATCGAAGTA
Found at i:37812909 original size:45 final size:45
Alignment explanation
Indices: 37812841--37813209 Score: 297
Period size: 44 Copynumber: 8.2 Consensus size: 45
37812831 GTGGAGTAGC
*** * ** *
37812841 AACAGATCTTGTCTTCCCATACTGGTGGCGAAACAGATCGAAGA-
1 AACAGATCTTGTCTTCATGTACTGGTGGTGAAGTAGATCAAAGAT
** *
37812885 AAGCAGATCTTGTCTTCATGTACTGG-CATGAAGTATATCAAAGAT
1 AA-CAGATCTTGTCTTCATGTACTGGTGGTGAAGTAGATCAAAGAT
*** * * *
37812930 AACAGATCTTGTCTTCCCATACTAGTGGCGAAGTAGATCGAAGA-
1 AACAGATCTTGTCTTCATGTACTGGTGGTGAAGTAGATCAAAGAT
*
37812974 AAGCAGATCTTGTCTTCATGTACTGG-CGTGAAGTAGATCAAAGAT
1 AA-CAGATCTTGTCTTCATGTACTGGTGGTGAAGTAGATCAAAGAT
*** * * *
37813019 AACAGATCTTG-CATTCCCATACTGGTGGTGAAGCAGATCGAAGGAAA
1 AACAGATCTTGTC-TTCATGTACTGGTGGTGAAGTAGATC-AAAG-AT
* * *
37813066 AAGCAGATTTTGTCTTCATGTATTGGT-GTGAAGTAGATCAAAGAC
1 AA-CAGATCTTGTCTTCATGTACTGGTGGTGAAGTAGATCAAAGAT
* * *
37813111 AACAGATCTTGTCTCTCCA--TACTGGTGGTGGAGTAGATTAAAGAG
1 AACAGATCTTGTCT-T-CATGTACTGGTGGTGAAGTAGATCAAAGAT
* * *
37813156 AACAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGAT
1 AACAGATCTTGTCTTCATGTACTGGTGGTGAAGTAGATCAAAGAT
* *
37813200 TATAGATCTT
1 AACAGATCTT
37813210 ATCTCCCTAA
Statistics
Matches: 255, Mismatches: 54, Indels: 32
0.75 0.16 0.09
Matches are distributed among these distances:
43 3 0.01
44 107 0.42
45 105 0.41
46 8 0.03
47 14 0.05
48 17 0.07
49 1 0.00
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (45 bp):
AACAGATCTTGTCTTCATGTACTGGTGGTGAAGTAGATCAAAGAT
Found at i:37812992 original size:89 final size:89
Alignment explanation
Indices: 37812841--37814123 Score: 1114
Period size: 89 Copynumber: 14.1 Consensus size: 89
37812831 GTGGAGTAGC
**
37812841 AACAGATCTTGTCTTCCCATACTGGTGGCGAAACAGATCGAAGAAAGCAGATCTTGTCTTCATGT
1 AACAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGT
* *
37812906 ACTGGCATGAAGTATATCAAAGAT
66 ACTGGCGTGAAGTAGATCAAAGAT
*
37812930 AACAGATCTTGTCTTCCCATACTAGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGT
1 AACAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGT
37812995 ACTGGCGTGAAGTAGATCAAAGAT
66 ACTGGCGTGAAGTAGATCAAAGAT
* * *
37813019 AACAGATCTTG-CATTCCCATACTGGTGGTGAAGCAGATCGAAGGAAAAAGCAGATTTTGTCTTC
1 AACAGATCTTGTC-TTCCCATACTGGTGGCGAAGTAGATCGAA-G--AAAGCAGATCTTGTCTTC
* * *
37813083 ATGTATTGGTGTGAAGTAGATCAAAGAC
62 ATGTACTGGCGTGAAGTAGATCAAAGAT
* * **
37813111 AACAGATCTTGTC-TCTCCATACTGGTGGTGGAGTAGATTAAAGAGAA-CAGATCTTGTCTTCAT
1 AACAGATCTTGTCTTC-CCATACTGGTGGCGAAGTAGATCGAAGA-AAGCAGATCTTGTCTTCAT
* *
37813174 GTATTGGCGTGAAGTAGATCGAAGAT
64 GTACTGGCGTGAAGTAGATCAAAGAT
* * * * * * * ** * * **
37813200 TATAGATCTTATC-TCCC-TAAGC-AGTAG-TAGAGCAGATCGAAGATGGCGGATTTTACCTCTC
1 AACAGATCTTGTCTTCCCAT-A-CTGGTGGCGA-AGTAGATCGAAGAAAGCAGATCTTGTCT-TC
* **
37813261 -TG-A--GGC-T-ACAGTGGACTACATTGA-
62 ATGTACTGGCGTGA-AGTAGA-T-CAAAGAT
* ** ** * ** * * *
37813285 AGCCAG-TAAT-TCTATCGAAGAAAATAGATATTGTCTTCATGTACTGGAGT-GAAGTAGATCAA
1 A-ACAGATCTTGTCT-TC-----CCATA-CTGGTGGC--GAAGTA---GA-TCG-A--AG---AA
*** * * ** *
37813347 AGATAACAGATCTTGTCTTCCCATACTGGTGGCGAAACAGATCGAAGA-
46 AG----CAGATCTTGTCTTCATGTACTGG-CGTGAAGTAGATCAAAGAT
* *** * * * **
37813395 AAGCAGATCTTATCTTCATGTACTGG-CGTGAAGTAGATCAAAGATAA-CAGATCTTGTCTTCCC
1 AA-CAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGA-AAGCAGATCTTGTCTTCAT
* * * *
37813458 ATACTGGTGACGAAGTAAATCAAAGAT
64 GTACTGGCG-TGAAGTAGATCAAAGAT
** *
37813485 AACAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAATAGATTTTGTCTTCATGT
1 AACAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGT
*
37813550 ACTGGCGTGAAATAGATCAAAGAT
66 ACTGGCGTGAAGTAGATCAAAGAT
* ** * *
37813574 AACAGATCTTGTCTTCCCATACTGGTGGCAAAACAGATCAAAGAAAACAGATCTTGTCTTCATGT
1 AACAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGT
*
37813639 ACTAGCGTGAAGTAGATCAAAGAT
66 ACTGGCGTGAAGTAGATCAAAGAT
** * *
37813663 AACAGATCTTGTCTTCCCATACTGGTGGCGAAACAGATCGAAAAAAGTAGATCTTGTCTTCATGT
1 AACAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGT
*
37813728 ACTGGCGTGAAGTAGATCAAAGGT
66 ACTGGCGTGAAGTAGATCAAAGAT
37813752 AACAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGGAAAAAGCAGATCTTGTCTTCA
1 AACAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAA-G--AAAGCAGATCTTGTCTTCA
37813817 TGTACTGGCGTGAAGTAGATCAAAGAT
63 TGTACTGGCGTGAAGTAGATCAAAGAT
* * * *
37813844 AACAGATTTTGTCTTCCCATACTGGTGGTGAAGTATATTGAAGAAAGCAGATCTTGTCTTCATGT
1 AACAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGT
37813909 ACTGGCGTGAAGTAGATCAAAGAT
66 ACTGGCGTGAAGTAGATCAAAGAT
* * * *
37813933 AACAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCGAAGGAAAAAACAGATCTTGTCTTCA
1 AACAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAA-G--AAAGCAGATCTTGTCTTCA
* *
37813998 TGTATTGGCGTGAAGTAGATCAAAGAC
63 TGTACTGGCGTGAAGTAGATCAAAGAT
* * * *
37814025 AGCAGATCTTGTCTCCCCATACTGGTGGTGGAGTAGATCGAAGAGAA-CAGATCTTGTCTTCATG
1 AACAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGA-AAGCAGATCTTGTCTTCATG
* *
37814089 TATTGGCGTGAAGTAGATCGAAGAT
65 TACTGGCGTGAAGTAGATCAAAGAT
*
37814114 TACAGATCTT
1 AACAGATCTT
37814124 ATCTCCCTAA
Statistics
Matches: 983, Mismatches: 146, Indels: 130
0.78 0.12 0.10
Matches are distributed among these distances:
83 1 0.00
84 8 0.01
85 6 0.01
86 7 0.01
87 2 0.00
88 28 0.03
89 580 0.59
90 42 0.04
91 7 0.01
92 240 0.24
93 2 0.00
94 4 0.00
95 1 0.00
96 2 0.00
97 3 0.00
98 4 0.00
99 2 0.00
100 2 0.00
102 4 0.00
103 2 0.00
105 1 0.00
106 5 0.01
107 8 0.01
108 1 0.00
110 9 0.01
111 5 0.01
112 6 0.01
113 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (89 bp):
AACAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGT
ACTGGCGTGAAGTAGATCAAAGAT
Found at i:37813148 original size:181 final size:178
Alignment explanation
Indices: 37812841--37814123 Score: 1275
Period size: 181 Copynumber: 7.1 Consensus size: 178
37812831 GTGGAGTAGC
* *
37812841 AACAGATCTTGTCTTCCCATACTGGTGGCGAAACAGATCGAA-G-AAAGCAGATCTTGTCTTCAT
1 AACAGATCTTG-CTTCCCATACTGGTGGTGAAGCAGATCGAAGGAAAAGCAGATCTTGTCTTCAT
* * * *
37812904 GTACTGGCATGAAGTATATCAAAGATAACAGATCTTGTCTTCCCATACTAGTGGCGAAGTAGATC
65 GTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATC
37812969 GAAGAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGAT
130 GAAGAAA-CAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGAT
*
37813019 AACAGATCTTGCATTCCCATACTGGTGGTGAAGCAGATCGAAGGAAAAAGCAGATTTTGTCTTCA
1 AACAGATCTTGC-TTCCCATACTGGTGGTGAAGCAGATCGAAGG-AAAAGCAGATCTTGTCTTCA
* * * *
37813084 TGTATTGGTGTGAAGTAGATCAAAGACAACAGATCTTGTC-TCTCCATACTGGTGGTGGAGTAGA
64 TGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTC-CCATACTGGTGGTGAAGTAGA
** * *
37813148 TTAAAGAGAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAT
128 TCGAAGA-AACAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGAT
* * * * * ** * * *
37813200 TATAGATCTT-ATCTCCC-TAAGC-AGTAGT-AGAGCAGATCGAA-G-ATGGCGGATTTTACCTC
1 AACAGATCTTGCT-TCCCAT-A-CTGGTGGTGA-AGCAGATCGAAGGAAAAGCAGATCTT--GTC
* * * * * * * *
37813259 TCTGAGGCTACAGTGGACTACATTGAAGCCAGTAATTCTATCGAAGAAAATAGATATTGTCTTCA
60 T-TCATG-TAC--TGG----C-GTGAAG-TAG--A-TC-A---AAGATAACAGATCTTGTCTTCC
** * * *** * * **
37813324 TGTACTGG-AGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACTGGTGGCGAAACAGA
108 CATACTGGTGGTGAAGTAGATCGAAGA-AACAGATCTTGTCTTCATGTACTGG-CGTGAAGTAGA
*
37813388 TCGAAGA-
171 TCAAAGAT
* *** * * * * *
37813395 AAGCAGATCTTATCTTCATGTACTGG-CGTGAAGTAGATC-AAAGATAA-CAGATCTTGTCTTCC
1 AA-CAGATCTT-GCTTCCCATACTGGTGGTGAAGCAGATCGAAGGAAAAGCAGATCTTGTCTTCA
** * * * *
37813457 CATACTGGTGACGAAGTAAATCAAAGATAACAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGA
64 TGTACTGGCG-TGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGA
* * *
37813522 TCGAAGAAAATAGATTTTGTCTTCATGTACTGGCGTGAAATAGATCAAAGAT
128 TCGAAG-AAACAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGAT
** * *
37813574 AACAGATCTTGTCTTCCCATACTGGTGGCAAAACAGATC-AAAGAAAA-CAGATCTTGTCTTCAT
1 AACAGATCTTG-CTTCCCATACTGGTGGTGAAGCAGATCGAAGGAAAAGCAGATCTTGTCTTCAT
* * **
37813637 GTACTAGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACTGGTGGCGAAACAGATC
65 GTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATC
* * *
37813702 GAAAAAAGTAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGGT
130 GAAGAAA-CAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGAT
* *
37813752 AACAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGGAAAAAGCAGATCTTGTCTTCA
1 AACAGATCTTG-CTTCCCATACTGGTGGTGAAGCAGATCGAAGG-AAAAGCAGATCTTGTCTTCA
* *
37813817 TGTACTGGCGTGAAGTAGATCAAAGATAACAGATTTTGTCTTCCCATACTGGTGGTGAAGTATAT
64 TGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGAT
*
37813882 TGAAGAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGAT
129 CGAAGAAA-CAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGAT
*
37813933 AACAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCGAAGGAAAAAACAGATCTTGTCTTCA
1 AACAGATCTTG-CTTCCCATACTGGTGGTGAAGCAGATCGAAGG-AAAAGCAGATCTTGTCTTCA
* * * * *
37813998 TGTATTGGCGTGAAGTAGATCAAAGACAGCAGATCTTGTCTCCCCATACTGGTGGTGGAGTAGAT
64 TGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGAT
* *
37814063 CGAAGAGAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAT
129 CGAAGA-AACAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGAT
*
37814114 TACAGATCTT
1 AACAGATCTT
37814124 ATCTCCCTAA
Statistics
Matches: 914, Mismatches: 141, Indels: 97
0.79 0.12 0.08
Matches are distributed among these distances:
177 13 0.01
178 224 0.25
179 82 0.09
180 30 0.03
181 422 0.46
182 6 0.01
183 4 0.00
185 1 0.00
186 4 0.00
188 5 0.01
189 2 0.00
190 3 0.00
191 1 0.00
192 5 0.01
193 2 0.00
194 3 0.00
195 39 0.04
196 59 0.06
197 7 0.01
198 2 0.00
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (178 bp):
AACAGATCTTGCTTCCCATACTGGTGGTGAAGCAGATCGAAGGAAAAGCAGATCTTGTCTTCATG
TACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCG
AAGAAACAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGAT
Found at i:37813404 original size:45 final size:44
Alignment explanation
Indices: 37813333--37814085 Score: 649
Period size: 45 Copynumber: 16.8 Consensus size: 44
37813323 ATGTACTGGA
37813333 GTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACTGGTG
1 GTGAAGTAGATCAAAGA-AACAGATCTTGTCTTCCCATACTGGTG
* ** * * *** *
37813378 GCGAAACAGATCGAAGAAAGCAGATCTTATCTTCATGTACTGG-C
1 GTGAAGTAGATCAAAGAAA-CAGATCTTGTCTTCCCATACTGGTG
37813422 GTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACTGGTG
1 GTGAAGTAGATCAAAGA-AACAGATCTTGTCTTCCCATACTGGTG
** *
37813467 ACGAAGTAAATCAAAGATAACAGATCTTGTCTTCCCATACTGGTG
1 GTGAAGTAGATCAAAGA-AACAGATCTTGTCTTCCCATACTGGTG
* * * * *** *
37813512 GCGAAGTAGATCGAAGAAAATAGATTTTGTCTTCATGTACTGG-C
1 GTGAAGTAGATCAAAG-AAACAGATCTTGTCTTCCCATACTGGTG
*
37813556 GTGAAATAGATCAAAGATAACAGATCTTGTCTTCCCATACTGGTG
1 GTGAAGTAGATCAAAGA-AACAGATCTTGTCTTCCCATACTGGTG
** ** *** * *
37813601 GCAAAACAGATCAAAGAAAACAGATCTTGTCTTCATGTACTAG-C
1 GTGAAGTAGATCAAAG-AAACAGATCTTGTCTTCCCATACTGGTG
37813645 GTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACTGGTG
1 GTGAAGTAGATCAAAGA-AACAGATCTTGTCTTCCCATACTGGTG
* ** * *** *
37813690 GCGAAACAGATCGAAA-AAAGTAGATCTTGTCTTCATGTACTGG-C
1 GTGAAGTAGATC-AAAGAAA-CAGATCTTGTCTTCCCATACTGGTG
*
37813734 GTGAAGTAGATCAAAGGTAACAGATCTTGTCTTCCCATACTGGTG
1 GTGAAGTAGATCAAA-GAAACAGATCTTGTCTTCCCATACTGGTG
* * *** *
37813779 GCGAAGTAGATCGAAGGAAAAAGCAGATCTTGTCTTCATGTACTGG-C
1 GTGAAGTAGATC-AA--AGAAA-CAGATCTTGTCTTCCCATACTGGTG
*
37813826 GTGAAGTAGATCAAAGATAACAGATTTTGTCTTCCCATACTGGTG
1 GTGAAGTAGATCAAAGA-AACAGATCTTGTCTTCCCATACTGGTG
* ** *** *
37813871 GTGAAGTATATTGAAGAAAGCAGATCTTGTCTTCATGTACTGG-C
1 GTGAAGTAGATCAAAGAAA-CAGATCTTGTCTTCCCATACTGGTG
*
37813915 GTGAAGTAGATCAAAGATAACAGATCTTGCCTTCCCATACTGGTG
1 GTGAAGTAGATCAAAGA-AACAGATCTTGTCTTCCCATACTGGTG
* * *** * *
37813960 GTGAAGCAGATCGAAGGAAAAAACAGATCTTGTCTTCATGTATTGG-C
1 GTGAAGTAGATC--A--AAGAAACAGATCTTGTCTTCCCATACTGGTG
* *
37814007 GTGAAGTAGATCAAAGACAGCAGATCTTGTCTCCCCATACTGGTG
1 GTGAAGTAGATCAAAGA-AACAGATCTTGTCTTCCCATACTGGTG
* *
37814052 GTGGAGTAGATCGAAGAGAACAGATCTTGTCTTC
1 GTGAAGTAGATCAAAGA-AACAGATCTTGTCTTC
37814086 ATGTATTGGC
Statistics
Matches: 554, Mismatches: 125, Indels: 58
0.75 0.17 0.08
Matches are distributed among these distances:
43 8 0.01
44 205 0.37
45 263 0.47
46 9 0.02
47 25 0.05
48 41 0.07
49 3 0.01
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (44 bp):
GTGAAGTAGATCAAAGAAACAGATCTTGTCTTCCCATACTGGTG
Found at i:37814259 original size:44 final size:44
Alignment explanation
Indices: 37814211--37814402 Score: 147
Period size: 44 Copynumber: 4.4 Consensus size: 44
37814201 CCAGTAATTA
37814211 TATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCT
1 TATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCT
** * ** ** ** *
37814255 TATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTT
1 TATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCT
* * * * ** * *
37814299 TACCTCCCTGAGGTTA-CAGTGGAGTACATTGAAG-CCA-ATATTT
1 TATCTCCCTG-GG-CAGCAGTGGAATAGATTGAAGATTACAGATCT
* *
37814342 CTATCTCCCTGGGCAACAGTGGAATAGATTGAAGAATACAGATCT
1 -TATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCT
*
37814387 TATCTCCCTAGGCAGC
1 TATCTCCCTGGGCAGC
37814403 GAAGTAGATC
Statistics
Matches: 109, Mismatches: 33, Indels: 12
0.71 0.21 0.08
Matches are distributed among these distances:
42 1 0.01
43 23 0.21
44 66 0.61
45 18 0.17
46 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.27
Consensus pattern (44 bp):
TATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCT
Found at i:37814274 original size:132 final size:132
Alignment explanation
Indices: 37814102--37814401 Score: 492
Period size: 132 Copynumber: 2.3 Consensus size: 132
37814092 TGGCGTGAAG
* * **
37814102 TAGATCGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCGAAGATGGTGGATTT
1 TAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCAAAGATGGCAGATTT
* * *
37814167 TATCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTATATCTCCCTGGGCAGCAGTGG
66 TACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAATAATTATATCTCCCTGGGCAACAGTGG
37814232 AA
131 AA
*
37814234 TAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTT
1 TAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCAAAGATGGCAGATTT
* *
37814299 TACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAATATTTCTATCTCCCTGGGCAACAGTGG
66 TACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAATAATTATATCTCCCTGGGCAACAGTGG
37814364 AA
131 AA
* *
37814366 TAGATTGAAGAATACAGATCTTATCTCCCTAGGCAG
1 TAGATTGAAGATTACAGATCTTATCTCCCTAAGCAG
37814402 CGAAGTAGAT
Statistics
Matches: 156, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
132 156 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.27
Consensus pattern (132 bp):
TAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCAAAGATGGCAGATTT
TACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAATAATTATATCTCCCTGGGCAACAGTGG
AA
Found at i:37814464 original size:44 final size:43
Alignment explanation
Indices: 37814414--37814648 Score: 187
Period size: 44 Copynumber: 5.4 Consensus size: 43
37814404 AAGTAGATCA
*
37814414 AAGTTGCAGTGGGGCAGATTAAGGA-AGCAAGTCTTATC-CTCCTG
1 AAGTTGCAGTGGAGCAGATTAA-GACAGCAA-TCTTATCTC-CCTG
* * **
37814458 AAGTTGCAGTGGGGCAGACTGAAGATGGCGAATCTTATCTCCCTG
1 AAGTTGCAGTGGAGCAGA-TTAAGACAGC-AATCTTATCTCCCTG
* ** *
37814503 AAGTTGCAGTGGAGCAGGTTAAAGACAATAATCCTATCTCCCTG
1 AAGTTGCAGTGGAGCAGATT-AAGACAGCAATCTTATCTCCCTG
* * *
37814547 AAGTTGCAGTGGAGCGGATTAAAACCA-CAGATCTTATCTCTCTG
1 AAGTTGCAGTGGAGCAGATTAAGA-CAGCA-ATCTTATCTCCCTG
* * * * *
37814591 AAGTTGCAGAGG-GTAGA-T-CG-CATCCAGTCTTATCTCCCTG
1 AAGTTGCAGTGGAGCAGATTAAGACA-GCAATCTTATCTCCCTG
37814631 AAGTTGCAGTGGAGCAGA
1 AAGTTGCAGTGGAGCAGA
37814649 CAGAACTCCT
Statistics
Matches: 156, Mismatches: 25, Indels: 23
0.76 0.12 0.11
Matches are distributed among these distances:
39 2 0.01
40 23 0.15
41 6 0.04
42 1 0.01
43 7 0.04
44 78 0.50
45 36 0.23
46 3 0.02
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (43 bp):
AAGTTGCAGTGGAGCAGATTAAGACAGCAATCTTATCTCCCTG
Found at i:37814509 original size:45 final size:44
Alignment explanation
Indices: 37814414--37814519 Score: 128
Period size: 45 Copynumber: 2.4 Consensus size: 44
37814404 AAGTAGATCA
*
37814414 AAGTTGCAGTGGGGCAGATTAAGGAAGCAAGTCTTATCCTCCTG
1 AAGTTGCAGTGGGGCAGATGAAGGAAGCAAGTCTTATCCTCCTG
*
37814458 AAGTTGCAGTGGGGCAGACTGAA-GATGGCGAA-TCTTAT-CTCCCTG
1 AAGTTGCAGTGGGGCAGA-TGAAGGA-AGC-AAGTCTTATCCT-CCTG
*
37814503 AAGTTGCAGTGGAGCAG
1 AAGTTGCAGTGGGGCAG
37814520 GTTAAAGACA
Statistics
Matches: 55, Mismatches: 3, Indels: 7
0.85 0.05 0.11
Matches are distributed among these distances:
44 22 0.40
45 31 0.56
46 2 0.04
ACGTcount: A:0.26, C:0.18, G:0.32, T:0.24
Consensus pattern (44 bp):
AAGTTGCAGTGGGGCAGATGAAGGAAGCAAGTCTTATCCTCCTG
Found at i:37817410 original size:21 final size:22
Alignment explanation
Indices: 37817380--37817435 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
37817370 CCTTGGTACT
37817380 TCAAAAA-TTTTGAAAATTTTA
1 TCAAAAATTTTTGAAAATTTTA
* *
37817401 TCAAAGATTTTTGAAAGTTTTTA
1 TCAAAAATTTTTGAAA-ATTTTA
*
37817424 TTAGAAAATTTT
1 TCA-AAAATTTT
37817436 ATCAAAGATT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
21 6 0.21
22 8 0.29
23 7 0.25
24 7 0.25
ACGTcount: A:0.41, C:0.04, G:0.09, T:0.46
Consensus pattern (22 bp):
TCAAAAATTTTTGAAAATTTTA
Found at i:37817448 original size:12 final size:12
Alignment explanation
Indices: 37817395--37817448 Score: 56
Period size: 12 Copynumber: 4.5 Consensus size: 12
37817385 AATTTTGAAA
37817395 ATTTTATCAAAG
1 ATTTTATCAAAG
*
37817407 ATTTT-TGAAAG
1 ATTTTATCAAAG
* * *
37817418 TTTTTATTAGAAA
1 ATTTTATCA-AAG
37817431 ATTTTATCAAAG
1 ATTTTATCAAAG
37817443 ATTTTA
1 ATTTTA
37817449 AAAGTTTTTT
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
11 9 0.27
12 15 0.45
13 9 0.27
ACGTcount: A:0.39, C:0.04, G:0.09, T:0.48
Consensus pattern (12 bp):
ATTTTATCAAAG
Found at i:37819522 original size:8 final size:8
Alignment explanation
Indices: 37819483--37819599 Score: 51
Period size: 9 Copynumber: 13.6 Consensus size: 8
37819473 ATGTGGCAAC
37819483 AAAATTAT
1 AAAATTAT
*
37819491 AAAA-AAT
1 AAAATTAT
*
37819498 -AAATCAAT
1 AAAAT-TAT
37819506 AAAAGTTAT
1 AAAA-TTAT
37819515 AAAATTATT
1 AAAATTA-T
*
37819524 AAATTTTAAT
1 AAA-ATT-AT
37819534 AAAAATTAT
1 -AAAATTAT
*
37819543 AAAAATTGT
1 -AAAATTAT
*
37819552 AAATTTTTAT
1 AAA--ATTAT
*
37819562 AAAAATCAT
1 -AAAATTAT
37819571 AAAA-TAT
1 AAAATTAT
*
37819578 AAAATTGT
1 AAAATTAT
37819586 AAAATTTAT
1 AAAA-TTAT
37819595 AAAAT
1 AAAAT
37819600 CGTAAGAAAT
Statistics
Matches: 84, Mismatches: 12, Indels: 26
0.69 0.10 0.21
Matches are distributed among these distances:
6 3 0.04
7 8 0.10
8 24 0.29
9 33 0.39
10 9 0.11
11 7 0.08
ACGTcount: A:0.60, C:0.02, G:0.03, T:0.36
Consensus pattern (8 bp):
AAAATTAT
Found at i:37819535 original size:28 final size:28
Alignment explanation
Indices: 37819503--37819583 Score: 94
Period size: 28 Copynumber: 2.9 Consensus size: 28
37819493 AAAATAAATC
*
37819503 AATAAAAGTTATAAAATTATTAAATTTT
1 AATAAAAATTATAAAATTATTAAATTTT
*
37819531 AATAAAAATTATAAAAATT-GTAAATTTT
1 AATAAAAATTAT-AAAATTATTAAATTTT
* * *
37819559 TATAAAAATCATAAAA-TATAAAATT
1 AATAAAAATTATAAAATTATTAAATT
37819584 GTAAAATTTA
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
26 1 0.02
27 9 0.20
28 29 0.64
29 6 0.13
ACGTcount: A:0.58, C:0.01, G:0.02, T:0.38
Consensus pattern (28 bp):
AATAAAAATTATAAAATTATTAAATTTT
Found at i:37819614 original size:35 final size:35
Alignment explanation
Indices: 37819535--37819616 Score: 98
Period size: 34 Copynumber: 2.3 Consensus size: 35
37819525 AATTTTAATA
*
37819535 AAAATTATAAAAATTGTAAATTTTTATAAAAATCAT
1 AAAATTAT-AAAATTGTAAATATTTATAAAAATCAT
*
37819571 AAAA-TATAAAATTGTAAA-ATTTAT-AAAATCGT
1 AAAATTATAAAATTGTAAATATTTATAAAAATCAT
37819603 AAGAAATTATAAAA
1 -A-AAATTATAAAA
37819617 AAATGTAAAG
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
32 7 0.17
33 6 0.15
34 14 0.34
35 10 0.24
36 4 0.10
ACGTcount: A:0.59, C:0.02, G:0.05, T:0.34
Consensus pattern (35 bp):
AAAATTATAAAATTGTAAATATTTATAAAAATCAT
Found at i:37819865 original size:20 final size:18
Alignment explanation
Indices: 37819840--37819883 Score: 70
Period size: 20 Copynumber: 2.3 Consensus size: 18
37819830 TCTTGATGCA
37819840 TTTTATAAAATTTTAATGAT
1 TTTTATAAAATTTT-AT-AT
37819860 TTTTATAAAATTTTATAT
1 TTTTATAAAATTTTATAT
37819878 TTTTAT
1 TTTTAT
37819884 GATTTTTATA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 8 0.33
19 2 0.08
20 14 0.58
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (18 bp):
TTTTATAAAATTTTATAT
Found at i:37819890 original size:10 final size:9
Alignment explanation
Indices: 37819848--37819990 Score: 66
Period size: 9 Copynumber: 15.8 Consensus size: 9
37819838 CATTTTATAA
*
37819848 AATTTTAAT
1 AATTTTTAT
*
37819857 GATTTTTAT
1 AATTTTTAT
*
37819866 AAAATTTTAT
1 -AATTTTTAT
37819876 -ATTTTTAT
1 AATTTTTAT
*
37819884 GATTTTTAT
1 AATTTTTAT
*
37819893 AATTTTTTTTCT
1 AA---TTTTTAT
*
37819905 AATTTTAAT
1 AATTTTTAT
**
37819914 AAAATTTA-
1 AATTTTTAT
37819922 AATATTTT-T
1 AAT-TTTTAT
37819931 -ATTTTTATT
1 AATTTTTA-T
*
37819940 AATATTTAAT
1 AAT-TTTTAT
37819950 AATTTTTAT
1 AATTTTTAT
*
37819959 AACTTTTATT
1 AATTTTTA-T
*
37819969 GATTTTTAT
1 AATTTTTAT
37819978 --TTTTTAT
1 AATTTTTAT
37819985 -ATTTTT
1 AATTTTT
37819991 TTTGTCACAT
Statistics
Matches: 102, Mismatches: 19, Indels: 27
0.69 0.13 0.18
Matches are distributed among these distances:
7 11 0.11
8 16 0.16
9 43 0.42
10 20 0.20
11 4 0.04
12 8 0.08
ACGTcount: A:0.32, C:0.01, G:0.02, T:0.64
Consensus pattern (9 bp):
AATTTTTAT
Found at i:37819946 original size:26 final size:26
Alignment explanation
Indices: 37819907--37819958 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
37819897 TTTTTTCTAA
37819907 TTTTAATAAAATTTAA-ATATTTTTAT
1 TTTTAATAAAATTTAATA-ATTTTTAT
* *
37819933 TTTTATTAATATTTAATAATTTTTAT
1 TTTTAATAAAATTTAATAATTTTTAT
37819959 AACTTTTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (26 bp):
TTTTAATAAAATTTAATAATTTTTAT
Found at i:37833811 original size:29 final size:28
Alignment explanation
Indices: 37833778--37833885 Score: 78
Period size: 29 Copynumber: 3.8 Consensus size: 28
37833768 AGAATACTAT
*
37833778 TTAAATGTATATTAAAAACATTTTTTATA
1 TTAAATATATATTAAAAA-ATTTTTTATA
*
37833807 TTAAA-ATAT-TTAAAATATTTTTTTATA
1 TTAAATATATATTAAAA-AATTTTTTATA
*** * *
37833834 TTTTCTAAAAATTAAAAATATTATTTTATA
1 TTAAATATATATTAAAAA-ATT-TTTTATA
* *
37833864 TTAAAT-CATATTAAAAGATTTT
1 TTAAATATATATTAAAAAATTTT
37833886 GTTTTGTTAT
Statistics
Matches: 60, Mismatches: 14, Indels: 12
0.70 0.16 0.14
Matches are distributed among these distances:
27 19 0.32
28 10 0.17
29 21 0.35
30 10 0.17
ACGTcount: A:0.45, C:0.03, G:0.02, T:0.50
Consensus pattern (28 bp):
TTAAATATATATTAAAAAATTTTTTATA
Found at i:37833854 original size:30 final size:31
Alignment explanation
Indices: 37833786--37833865 Score: 91
Period size: 30 Copynumber: 2.8 Consensus size: 31
37833776 ATTTAAATGT
*
37833786 ATATTAAAAACATT-TTTTATA---T-TAAA
1 ATATTAAAAATATTATTTTATATTTTCTAAA
* *
37833812 ATATTTAAAATATTTTTTTATATTTTCTAAA
1 ATATTAAAAATATTATTTTATATTTTCTAAA
37833843 A-ATTAAAAATATTATTTTATATT
1 ATATTAAAAATATTATTTTATATT
37833866 AAATCATATT
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
26 12 0.27
27 7 0.16
30 21 0.47
31 5 0.11
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (31 bp):
ATATTAAAAATATTATTTTATATTTTCTAAA
Found at i:37836443 original size:25 final size:24
Alignment explanation
Indices: 37836402--37836449 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
37836392 TTATAAATTA
* *
37836402 GAAAAATATCTTTAGAAATTTTTT
1 GAAAAATATCTTCAGAAAATTTTT
*
37836426 GAAATAATCTCTTCAGAAAATTTT
1 GAAA-AATATCTTCAGAAAATTTT
37836450 CTCTCAATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42
Consensus pattern (24 bp):
GAAAAATATCTTCAGAAAATTTTT
Found at i:37836589 original size:26 final size:26
Alignment explanation
Indices: 37836560--37836647 Score: 61
Period size: 26 Copynumber: 3.1 Consensus size: 26
37836550 AATCACTTTA
37836560 ATATTAAATTAATATAATATTTATCT
1 ATATTAAATTAATATAATATTTATCT
** *
37836586 ATATATAAACATTATATTATTTTAATA-AGATTT
1 ATAT-T-AA-ATTA-A-TA---TAATATTTATCT
37836619 AATATTAAATTAATATAATATTTATCT
1 -ATATTAAATTAATATAATATTTATCT
37836646 AT
1 AT
37836648 CAAGATAAAT
Statistics
Matches: 46, Mismatches: 6, Indels: 20
0.64 0.08 0.28
Matches are distributed among these distances:
26 11 0.24
27 4 0.09
28 2 0.04
29 6 0.13
30 2 0.04
31 6 0.13
32 2 0.04
33 4 0.09
34 9 0.20
ACGTcount: A:0.47, C:0.03, G:0.01, T:0.49
Consensus pattern (26 bp):
ATATTAAATTAATATAATATTTATCT
Found at i:37836687 original size:62 final size:61
Alignment explanation
Indices: 37836560--37836740 Score: 215
Period size: 62 Copynumber: 2.9 Consensus size: 61
37836550 AATCACTTTA
* * * *
37836560 ATATTAAATTAATATAATATTTATCTATATATAAACATTATATTATTTTAATA--AGATTT
1 ATATTAAATTAATATAATATTTATCTATAGATAAACATTATATTAATTTAATATTAAATCT
*
37836619 AATATTAAATTAATATAATATTTATCTATCAAGATAAATATTATATTAATTTAATATTAAATCT
1 -ATATTAAATTAATATAATATTTATCTAT--AGATAAACATTATATTAATTTAATATTAAATCT
* * * *
37836683 -TATTAAAATAATATAATGTTTATCTTGTAGATAAACATTAAATTGAATTTAATATTAA
1 ATATTAAATTAATATAATATTTATC-TATAGATAAACATTATATT-AATTTAATATTAA
37836741 GATAATCACT
Statistics
Matches: 105, Mismatches: 10, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
60 28 0.27
61 14 0.13
62 57 0.54
63 2 0.02
64 4 0.04
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.46
Consensus pattern (61 bp):
ATATTAAATTAATATAATATTTATCTATAGATAAACATTATATTAATTTAATATTAAATCT
Found at i:37840242 original size:27 final size:26
Alignment explanation
Indices: 37840203--37840266 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 26
37840193 TCGTAAGTGA
* *
37840203 GGGTTCACTAGTGCTTCACCAAACTAG
1 GGGTTCGCCAGTGCTTCACCAAACT-G
* *
37840230 GGGTTCGCCAGTGCTTCAGCGAACTG
1 GGGTTCGCCAGTGCTTCACCAAACTG
37840256 GGTGTTCGCCA
1 GG-GTTCGCCA
37840267 AATGAATATC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 3 0.09
27 29 0.91
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.25
Consensus pattern (26 bp):
GGGTTCGCCAGTGCTTCACCAAACTG
Found at i:37841084 original size:14 final size:13
Alignment explanation
Indices: 37841052--37841097 Score: 65
Period size: 13 Copynumber: 3.5 Consensus size: 13
37841042 TCTGAAACTT
37841052 TGTTTTTAATATA
1 TGTTTTTAATATA
*
37841065 TGTTTTTAAGATA
1 TGTTTTTAATATA
*
37841078 TGATTTTAAATATA
1 TG-TTTTTAATATA
37841092 TGTTTT
1 TGTTTT
37841098 ACGCCTGCTC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
13 18 0.62
14 11 0.38
ACGTcount: A:0.30, C:0.00, G:0.11, T:0.59
Consensus pattern (13 bp):
TGTTTTTAATATA
Found at i:37841165 original size:14 final size:13
Alignment explanation
Indices: 37841119--37841168 Score: 50
Period size: 14 Copynumber: 3.8 Consensus size: 13
37841109 TAAGCGAGCA
37841119 TATG-TTTT-AAG
1 TATGTTTTTAAAG
37841130 ATATGTTTTTAAAG
1 -TATGTTTTTAAAG
37841144 TATGGTTTTGTAAAG
1 TAT-GTTTT-TAAAG
*
37841159 TGTGTTTTTA
1 TATGTTTTTA
37841169 GGCACTTTAG
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
12 4 0.12
13 9 0.27
14 13 0.39
15 7 0.21
ACGTcount: A:0.26, C:0.00, G:0.20, T:0.54
Consensus pattern (13 bp):
TATGTTTTTAAAG
Found at i:37848763 original size:20 final size:19
Alignment explanation
Indices: 37848724--37848763 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
37848714 AAATAGTGAG
*
37848724 AATTTATTTTCTGAGTATA
1 AATTTATTTTCTGAGAATA
*
37848743 AATTCTATTTTCTGGGAATA
1 AATT-TATTTTCTGAGAATA
37848763 A
1 A
37848764 CAATTCTATC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.33, C:0.07, G:0.12, T:0.47
Consensus pattern (19 bp):
AATTTATTTTCTGAGAATA
Found at i:37859420 original size:12 final size:12
Alignment explanation
Indices: 37859405--37859435 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
37859395 GATGAAAATG
37859405 TAAATAAAGAAA
1 TAAATAAAGAAA
37859417 TAAATAAAGAAA
1 TAAATAAAGAAA
*
37859429 TGAATAA
1 TAAATAA
37859436 GATTTAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.71, C:0.00, G:0.10, T:0.19
Consensus pattern (12 bp):
TAAATAAAGAAA
Found at i:37859460 original size:2 final size:2
Alignment explanation
Indices: 37859455--37859488 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
37859445 AAGGTAAAAG
* *
37859455 AT AT AT AT AT AT AT AT GT AT AT GT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
37859489 GCATATAAGA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (2 bp):
AT
Found at i:37859475 original size:12 final size:12
Alignment explanation
Indices: 37859455--37859495 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
37859445 AAGGTAAAAG
*
37859455 ATATATATATAT
1 ATATATATATGT
*
37859467 ATATGTATATGT
1 ATATATATATGT
*
37859479 ATATATATATGC
1 ATATATATATGT
37859491 ATATA
1 ATATA
37859496 AGAATTGTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.44, C:0.02, G:0.07, T:0.46
Consensus pattern (12 bp):
ATATATATATGT
Found at i:37859558 original size:30 final size:32
Alignment explanation
Indices: 37859514--37859599 Score: 88
Period size: 32 Copynumber: 2.6 Consensus size: 32
37859504 AAGATAAGAA
*
37859514 ATACGTATAAGTATATATATGTTAGCAAAAATAA-
1 ATACGTAT--GTATATATATATTA-CAAAAATAAT
*
37859548 A-A-GTATGTATATAGATATATTATAAAAATAAT
1 ATACGTATGTATAT--ATATATTACAAAAATAAT
37859580 ATACGTATGTATATATATAT
1 ATACGTATGTATATATATAT
37859600 GTATGTATTA
Statistics
Matches: 45, Mismatches: 2, Indels: 12
0.76 0.03 0.20
Matches are distributed among these distances:
30 6 0.13
31 8 0.18
32 18 0.40
33 2 0.04
34 11 0.24
ACGTcount: A:0.49, C:0.03, G:0.10, T:0.37
Consensus pattern (32 bp):
ATACGTATGTATATATATATTACAAAAATAAT
Found at i:37859884 original size:3 final size:3
Alignment explanation
Indices: 37859870--37859947 Score: 54
Period size: 3 Copynumber: 26.3 Consensus size: 3
37859860 GAATGAGTAG
* * *
37859870 ATA ATT ATA ATA ATA A-A GTA AGTA ATA ATA ATA A-A TATA ATA CTA
1 ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA -ATA ATA ATA
* * * *
37859915 ATA ATA GTA ATA GTA GTA GTA ATA AT- ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
37859948 ATGAAAGGGA
Statistics
Matches: 60, Mismatches: 10, Indels: 10
0.75 0.12 0.12
Matches are distributed among these distances:
2 4 0.07
3 52 0.87
4 4 0.07
ACGTcount: A:0.58, C:0.01, G:0.08, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:37859899 original size:18 final size:17
Alignment explanation
Indices: 37859871--37859926 Score: 62
Period size: 18 Copynumber: 3.3 Consensus size: 17
37859861 AATGAGTAGA
*
37859871 TAATTATAATAATAAAG
1 TAATAATAATAATAAAG
37859888 TAAGTAATAATAATAAA-
1 TAA-TAATAATAATAAAG
*
37859905 T-ATAATACTAATAATAG
1 TAATAATAATAATAA-AG
37859922 TAATA
1 TAATA
37859927 GTAGTAGTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
15 11 0.33
16 2 0.06
17 5 0.15
18 15 0.45
ACGTcount: A:0.59, C:0.02, G:0.05, T:0.34
Consensus pattern (17 bp):
TAATAATAATAATAAAG
Found at i:37861045 original size:15 final size:17
Alignment explanation
Indices: 37861025--37861062 Score: 53
Period size: 15 Copynumber: 2.3 Consensus size: 17
37861015 TACAGTGTAC
37861025 GGAGGCG-TGTG-GCGT
1 GGAGGCGTTGTGCGCGT
37861040 GGAGGCGTTGTGCGCGT
1 GGAGGCGTTGTGCGCGT
37861057 GCGAGG
1 G-GAGG
37861063 GCAGCGGCTG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 7 0.35
16 4 0.20
17 5 0.25
18 4 0.20
ACGTcount: A:0.08, C:0.16, G:0.58, T:0.18
Consensus pattern (17 bp):
GGAGGCGTTGTGCGCGT
Found at i:37863571 original size:87 final size:85
Alignment explanation
Indices: 37863422--37863579 Score: 194
Period size: 87 Copynumber: 1.8 Consensus size: 85
37863412 ATATTGGGAT
* * * * *
37863422 TGCATTAAATGCATCCATTGTTGTCGTTGAACGTCAATTCACTTTTTGGCAAGTTTTAAAAGTAA
1 TGCATTAAATGCATCCATTGTTGCCGCTGAACGTCAATGCACTTTCTAGCAAGTTTTAAAAGT--
37863487 CATGTTTTAATCCCTTTCTTAA
64 CATGTTTTAATCCCTTTCTTAA
* * *
37863509 TGCATTAGATGCATCCATTGTTGCCGCTGAACGTCAATGC-GTTTCTAGTAAGTCCTTT-AAAGT
1 TGCATTAAATGCATCCATTGTTGCCGCTGAACGTCAATGCACTTTCTAGCAAGT--TTTAAAAGT
37863572 CATGTTTT
64 CATGTTTT
37863580 TATACTTAGG
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
85 8 0.13
86 9 0.15
87 41 0.67
88 3 0.05
ACGTcount: A:0.25, C:0.18, G:0.16, T:0.40
Consensus pattern (85 bp):
TGCATTAAATGCATCCATTGTTGCCGCTGAACGTCAATGCACTTTCTAGCAAGTTTTAAAAGTCA
TGTTTTAATCCCTTTCTTAA
Found at i:37867871 original size:17 final size:18
Alignment explanation
Indices: 37867851--37867889 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
37867841 TGGATTACAC
37867851 GGGT-GTGTAGGCCACAT
1 GGGTCGTGTAGGCCACAT
*
37867868 GGGTGCGTGTGGGCCACAT
1 GGGT-CGTGTAGGCCACAT
37867887 GGG
1 GGG
37867890 CTGCCCAGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 4 0.21
19 15 0.79
ACGTcount: A:0.13, C:0.18, G:0.49, T:0.21
Consensus pattern (18 bp):
GGGTCGTGTAGGCCACAT
Found at i:37868307 original size:25 final size:28
Alignment explanation
Indices: 37868278--37868329 Score: 83
Period size: 25 Copynumber: 2.0 Consensus size: 28
37868268 TATATTAGTA
37868278 AAGGTTAATATA-GTA-AAT-TAACAAT
1 AAGGTTAATATATGTATAATATAACAAT
37868303 AAGGTTAATATATGTATAATATAACAA
1 AAGGTTAATATATGTATAATATAACAA
37868330 ATTAAAATGC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 12 0.50
26 3 0.12
27 3 0.12
28 6 0.25
ACGTcount: A:0.52, C:0.04, G:0.12, T:0.33
Consensus pattern (28 bp):
AAGGTTAATATATGTATAATATAACAAT
Found at i:37870274 original size:41 final size:41
Alignment explanation
Indices: 37870229--37870455 Score: 418
Period size: 41 Copynumber: 5.5 Consensus size: 41
37870219 AACTTTAAGT
37870229 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGTTATAAAC
*
37870270 CTAGCAGGCTACGTGCCGGTGATCTGAATCAAGTTATAAAC
1 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGTTATAAAC
37870311 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGTTATAAAC
37870352 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGTTATAAAC
* *
37870393 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGCTATAAGC
1 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGTTATAAAC
*
37870434 CTAGCAGGCTAAGTGCCGGTGA
1 CTAGCAGGCTACGTGCCGGTGA
37870456 ATATGTTAAA
Statistics
Matches: 181, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 181 1.00
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.23
Consensus pattern (41 bp):
CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGTTATAAAC
Found at i:37872391 original size:13 final size:13
Alignment explanation
Indices: 37872375--37872399 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37872365 GTCTGTGAAA
37872375 AAATACTTTTGAG
1 AAATACTTTTGAG
37872388 AAATACTTTTGA
1 AAATACTTTTGA
37872400 AAAGTTTGGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.12, T:0.40
Consensus pattern (13 bp):
AAATACTTTTGAG
Found at i:37873767 original size:5 final size:5
Alignment explanation
Indices: 37873768--37873818 Score: 102
Period size: 5 Copynumber: 10.2 Consensus size: 5
37873758 TTTATCTTAT
37873768 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
37873818 T
1 T
37873819 TTTGGATAGT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 46 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TATTA
Found at i:37881475 original size:24 final size:23
Alignment explanation
Indices: 37881443--37881510 Score: 84
Period size: 24 Copynumber: 2.9 Consensus size: 23
37881433 GATGTTTAGC
37881443 CTTTCACCTTTCATCTTCCTTAAA
1 CTTTCACCTTTCATCTTCCTT-AA
**
37881467 CTTTCACCTTTTGTCTTCCTTAA
1 CTTTCACCTTTCATCTTCCTTAA
*
37881490 CTCTTCACATTTCATC-TCCTT
1 CT-TTCACCTTTCATCTTCCTT
37881511 GTAATCCCTT
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
23 9 0.24
24 29 0.76
ACGTcount: A:0.16, C:0.34, G:0.01, T:0.49
Consensus pattern (23 bp):
CTTTCACCTTTCATCTTCCTTAA
Found at i:37887828 original size:27 final size:26
Alignment explanation
Indices: 37887798--37887849 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
37887788 TTAAAATAAA
*
37887798 AAGGTTAATGAATAGAGTTCCTGTCAC
1 AAGGTTAATG-ACAGAGTTCCTGTCAC
* *
37887825 AAGGTTATTGCCAGAGTTCCTGTCA
1 AAGGTTAATGACAGAGTTCCTGTCA
37887850 ATCACAGCTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 13 0.59
27 9 0.41
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (26 bp):
AAGGTTAATGACAGAGTTCCTGTCAC
Found at i:37889964 original size:17 final size:17
Alignment explanation
Indices: 37889940--37889981 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
37889930 TAAACTTTTC
37889940 ACCTTTCATCTCCCTTA
1 ACCTTTCATCTCCCTTA
* * *
37889957 ATCTTTCATCTTCTTTA
1 ACCTTTCATCTCCCTTA
37889974 ACCTTTCA
1 ACCTTTCA
37889982 CCTTTCATAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.19, C:0.33, G:0.00, T:0.48
Consensus pattern (17 bp):
ACCTTTCATCTCCCTTA
Found at i:37890024 original size:23 final size:23
Alignment explanation
Indices: 37889959--37890038 Score: 108
Period size: 24 Copynumber: 3.4 Consensus size: 23
37889949 CTCCCTTAAT
37889959 CTTTCATCTTCTTTAAC-CTTTCAC
1 CTTTCATCTTC-TTAACTCTTT-AC
*
37889983 CTTTCATATTCCTTAACTCTTTAC
1 CTTTCATCTT-CTTAACTCTTTAC
*
37890007 CTTTCATCTTCTTAACTCTTCAC
1 CTTTCATCTTCTTAACTCTTTAC
37890030 CTTTCATCT
1 CTTTCATCT
37890039 CCTTGTATCC
Statistics
Matches: 51, Mismatches: 3, Indels: 5
0.86 0.05 0.08
Matches are distributed among these distances:
23 21 0.41
24 25 0.49
25 5 0.10
ACGTcount: A:0.17, C:0.33, G:0.00, T:0.50
Consensus pattern (23 bp):
CTTTCATCTTCTTAACTCTTTAC
Found at i:37890802 original size:18 final size:17
Alignment explanation
Indices: 37890771--37890816 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 17
37890761 AGAATAGGGT
37890771 TTTAAAATAAATAAAAATA
1 TTTAAAA-AAATAAAAA-A
37890790 TTTAAAAAAATAAAAAA
1 TTTAAAAAAATAAAAAA
*
37890807 TCTAAAAAAA
1 TTTAAAAAAA
37890817 AAGATTTCCT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
17 10 0.38
18 9 0.35
19 7 0.27
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (17 bp):
TTTAAAAAAATAAAAAA
Found at i:37890817 original size:18 final size:18
Alignment explanation
Indices: 37890772--37890817 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
37890762 GAATAGGGTT
*
37890772 TTAAAATAAATAAAAATA
1 TTAAAAAAAATAAAAATA
*
37890790 TTTAAAAAAATAAAAA-A
1 TTAAAAAAAATAAAAATA
37890807 TCTAAAAAAAA
1 T-TAAAAAAAA
37890818 AGATTTCCTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 2 0.08
18 22 0.92
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.24
Consensus pattern (18 bp):
TTAAAAAAAATAAAAATA
Found at i:37893230 original size:23 final size:22
Alignment explanation
Indices: 37893178--37893230 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
37893168 TCCACGTCTT
*
37893178 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
37893200 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
37893223 TTTCTTTT
1 TTTCTTTT
37893231 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:37896435 original size:18 final size:19
Alignment explanation
Indices: 37896412--37896453 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
37896402 TTTTTTAGAT
37896412 TTTTATT-TTTTAAAAATA
1 TTTTATTATTTTAAAAATA
*
37896430 TTTTATTAATTTTAAATATA
1 TTTTATT-ATTTTAAAAATA
37896450 TTTT
1 TTTT
37896454 TTAAATTATG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 7 0.33
20 14 0.67
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (19 bp):
TTTTATTATTTTAAAAATA
Done.