Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67659327
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 461372 characters in sequence are not A, C, G, or T
File 119 of 216
Found at i:37896460 original size:20 final size:20
Alignment explanation
Indices: 37896419--37896457 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
37896409 GATTTTTATT
37896419 TTTTAAAAATATTTTATTAA
1 TTTTAAAAATATTTTATTAA
*
37896439 TTTTAAATATATTTT-TTAA
1 TTTTAAAAATATTTTATTAA
37896458 ATTATGACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (20 bp):
TTTTAAAAATATTTTATTAA
Found at i:37897891 original size:12 final size:12
Alignment explanation
Indices: 37897874--37897899 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
37897864 AGACTTTTGG
37897874 TGAAGTGCAAGA
1 TGAAGTGCAAGA
37897886 TGAAGTGCAAGA
1 TGAAGTGCAAGA
37897898 TG
1 TG
37897900 GGTTTGCATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.08, G:0.35, T:0.19
Consensus pattern (12 bp):
TGAAGTGCAAGA
Found at i:37901137 original size:20 final size:20
Alignment explanation
Indices: 37901114--37901154 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
37901104 AATATCGCGA
37901114 ACAAGCTACCAAAATCGCAG
1 ACAAGCTACCAAAATCGCAG
37901134 ACAAGCTACCAAAATCGCAG
1 ACAAGCTACCAAAATCGCAG
37901154 A
1 A
37901155 TAAACTGTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.46, C:0.29, G:0.15, T:0.10
Consensus pattern (20 bp):
ACAAGCTACCAAAATCGCAG
Found at i:37905435 original size:18 final size:18
Alignment explanation
Indices: 37905398--37905444 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
37905388 CAAAATTGCG
*
37905398 AGTTGCGAGCTCACTTGA
1 AGTTGCAAGCTCACTTGA
37905416 AGTTGCAAGCTCA-TTGGA
1 AGTTGCAAGCTCACTT-GA
*
37905434 AGCTGCAAGCT
1 AGTTGCAAGCT
37905445 GTCAAGACTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
17 2 0.08
18 24 0.92
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (18 bp):
AGTTGCAAGCTCACTTGA
Found at i:37909139 original size:41 final size:41
Alignment explanation
Indices: 37909078--37909232 Score: 169
Period size: 41 Copynumber: 3.9 Consensus size: 41
37909068 TTCTGACCTT
*
37909078 TCGGGGCTTTAGCGGTGTTTTTGAAAAAGCGCCGCTAATGC
1 TCGGGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
* *
37909119 TCGGGGCTTTAACGGCGTTTTTGAAAAAGTGCCGC---T-C
1 TCGGGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
* * *
37909156 T--GGGCTTTAGCGGAGTTTTTAAAAAAGCGCCGCTAACGC
1 TCGGGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
** * * *
37909195 TTTGGTCTTTAGCGGCGTTTTTGAATAAGCGTCGCTAA
1 TCGGGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAA
37909233 AAAACATTTT
Statistics
Matches: 95, Mismatches: 13, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
35 28 0.29
37 2 0.02
38 1 0.01
39 2 0.02
41 62 0.65
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (41 bp):
TCGGGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
Found at i:37909613 original size:21 final size:21
Alignment explanation
Indices: 37909579--37909631 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
37909569 GTATGAATTA
* *
37909579 GGGA-TTATGGTTTAAGTGTT
1 GGGATTTAAGGTTTAAGGGTT
37909599 GGGATTTAAGGTTTAAGGGTT
1 GGGATTTAAGGTTTAAGGGTT
*
37909620 GAGGGTTTAAGG
1 G-GGATTTAAGG
37909632 GTTAGACATT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 4 0.14
21 15 0.54
22 9 0.32
ACGTcount: A:0.23, C:0.00, G:0.40, T:0.38
Consensus pattern (21 bp):
GGGATTTAAGGTTTAAGGGTT
Found at i:37915357 original size:102 final size:102
Alignment explanation
Indices: 37915237--37915422 Score: 347
Period size: 102 Copynumber: 1.8 Consensus size: 102
37915227 TCAAAAATAA
37915237 AACATAATATAATATTTATCATAGAAATAAATATTATTTAATTAAAATATTTTTTTAAAAGTCAT
1 AACATAATATAATATTTATCATAGAAATAAATATTATTTAATTAAAATATTTTTTTAAAAGTCAT
37915302 GTTTTTAGCT-GCGTTTGTGAAAAAGCGCCACTAAAAG
66 GTTTTTAG-TGGCGTTTGTGAAAAAGCGCCACTAAAAG
*
37915339 AACATAATATAATATTTATCATAGAAATAAATATTATTTAATTAAAATATTTTTTTAAAATTCAT
1 AACATAATATAATATTTATCATAGAAATAAATATTATTTAATTAAAATATTTTTTTAAAAGTCAT
37915404 GTTTTTAGTGGCGTTTGTG
66 GTTTTTAGTGGCGTTTGTG
37915423 GTAAAAGTGT
Statistics
Matches: 82, Mismatches: 1, Indels: 2
0.96 0.01 0.02
Matches are distributed among these distances:
101 1 0.01
102 81 0.99
ACGTcount: A:0.41, C:0.07, G:0.10, T:0.42
Consensus pattern (102 bp):
AACATAATATAATATTTATCATAGAAATAAATATTATTTAATTAAAATATTTTTTTAAAAGTCAT
GTTTTTAGTGGCGTTTGTGAAAAAGCGCCACTAAAAG
Found at i:37915451 original size:42 final size:43
Alignment explanation
Indices: 37915400--37915503 Score: 131
Period size: 42 Copynumber: 2.5 Consensus size: 43
37915390 TTTTTAAAAT
* *
37915400 TCATG-TTTTTAGTGGCGTTTGTGGTAAAAGTGTCGTTAAAGG
1 TCATGATTTTTAGTGGCGTTTGTGGTAAAAGTGCCGCTAAAGG
** *
37915442 -CATGATTTTTAGTGGTATTTGTGGTAGAAGTGCCGCTAAAGG
1 TCATGATTTTTAGTGGCGTTTGTGGTAAAAGTGCCGCTAAAGG
* *
37915484 TCATGATATTTAGCGGCGTT
1 TCATGATTTTTAGTGGCGTT
37915504 GTCTATAGCG
Statistics
Matches: 51, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
41 4 0.08
42 32 0.63
43 15 0.29
ACGTcount: A:0.22, C:0.10, G:0.30, T:0.38
Consensus pattern (43 bp):
TCATGATTTTTAGTGGCGTTTGTGGTAAAAGTGCCGCTAAAGG
Found at i:37916273 original size:16 final size:16
Alignment explanation
Indices: 37916252--37916283 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
37916242 CATTTATTCC
37916252 AACAATAATAGGAGCA
1 AACAATAATAGGAGCA
37916268 AACAATAATAGGAGCA
1 AACAATAATAGGAGCA
37916284 CATCAAATTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.12, G:0.19, T:0.12
Consensus pattern (16 bp):
AACAATAATAGGAGCA
Found at i:37928513 original size:6 final size:6
Alignment explanation
Indices: 37928502--37928545 Score: 88
Period size: 6 Copynumber: 7.3 Consensus size: 6
37928492 CATATAACTG
37928502 ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT AT
1 ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT AT
37928546 ATATTCTTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 38 1.00
ACGTcount: A:0.34, C:0.16, G:0.00, T:0.50
Consensus pattern (6 bp):
ATCTAT
Found at i:37940655 original size:4 final size:4
Alignment explanation
Indices: 37940648--37940696 Score: 98
Period size: 4 Copynumber: 12.2 Consensus size: 4
37940638 TGTGTGTGTG
37940648 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
37940696 T
1 T
37940697 TGTTTATTAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 45 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.51
Consensus pattern (4 bp):
TGTA
Found at i:37940750 original size:23 final size:23
Alignment explanation
Indices: 37940723--37940803 Score: 101
Period size: 23 Copynumber: 3.5 Consensus size: 23
37940713 ACATTGTTCG
*
37940723 TGAACATGTTGGATTAAGTTAAA
1 TGAACATGTTCGATTAAGTTAAA
* **
37940746 TGAACATGTTCGTTTAATGTT-TG
1 TGAACATGTTCGATTAA-GTTAAA
*
37940769 TGAACATGTTCGATTAAATTAAA
1 TGAACATGTTCGATTAAGTTAAA
37940792 TGAACATGTTCG
1 TGAACATGTTCG
37940804 TGAACATTAA
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
22 2 0.04
23 43 0.90
24 3 0.06
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.38
Consensus pattern (23 bp):
TGAACATGTTCGATTAAGTTAAA
Found at i:37940791 original size:46 final size:46
Alignment explanation
Indices: 37940717--37940804 Score: 149
Period size: 46 Copynumber: 1.9 Consensus size: 46
37940707 TTATTAACAT
* *
37940717 TGTTCGTGAACATGTTGGATTAAGTTAAATGAACATGTTCGTTTAA
1 TGTTCGTGAACATGTTCGATTAAATTAAATGAACATGTTCGTTTAA
*
37940763 TGTTTGTGAACATGTTCGATTAAATTAAATGAACATGTTCGT
1 TGTTCGTGAACATGTTCGATTAAATTAAATGAACATGTTCGT
37940805 GAACATTAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (46 bp):
TGTTCGTGAACATGTTCGATTAAATTAAATGAACATGTTCGTTTAA
Found at i:37940812 original size:23 final size:23
Alignment explanation
Indices: 37940723--37940814 Score: 71
Period size: 23 Copynumber: 4.0 Consensus size: 23
37940713 ACATTGTTCG
* * *
37940723 TGAACATGTTGGATTAAGTTAAA
1 TGAACATGTTCGATGAAATTAAA
** ***
37940746 TGAACATGTTCG-TTTAATGTTTG
1 TGAACATGTTCGATGAAAT-TAAA
*
37940769 TGAACATGTTCGATTAAATTAAA
1 TGAACATGTTCGATGAAATTAAA
37940792 TGAACATGTTCG-TGAACATTAAA
1 TGAACATGTTCGATGAA-ATTAAA
37940815 CAAATGAACA
Statistics
Matches: 55, Mismatches: 11, Indels: 6
0.76 0.15 0.08
Matches are distributed among these distances:
22 7 0.13
23 43 0.78
24 5 0.09
ACGTcount: A:0.36, C:0.09, G:0.18, T:0.37
Consensus pattern (23 bp):
TGAACATGTTCGATGAAATTAAA
Found at i:37941036 original size:31 final size:31
Alignment explanation
Indices: 37940998--37941075 Score: 120
Period size: 31 Copynumber: 2.5 Consensus size: 31
37940988 ATGTTTGCAT
* * *
37940998 TTTCATTTTGGTCACCTAACTTCTAGGTCGC
1 TTTCATTTTGATCACCCAACTTCTAAGTCGC
*
37941029 TTTCATTTTGATCACCCAACTTTTAAGTCGC
1 TTTCATTTTGATCACCCAACTTCTAAGTCGC
37941060 TTTCATTTTGATCACC
1 TTTCATTTTGATCACC
37941076 AAAAAAATAC
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.19, C:0.26, G:0.12, T:0.44
Consensus pattern (31 bp):
TTTCATTTTGATCACCCAACTTCTAAGTCGC
Found at i:37941805 original size:13 final size:13
Alignment explanation
Indices: 37941787--37941862 Score: 84
Period size: 13 Copynumber: 5.8 Consensus size: 13
37941777 TTGGCAATGT
37941787 TTTTGAAAAGTGC
1 TTTTGAAAAGTGC
37941800 TTTTGAAAAGTG-
1 TTTTGAAAAGTGC
*
37941812 TTGTGAAAAAGTGC
1 TTTTG-AAAAGTGC
* *
37941826 TGTGGAAAAGTGC
1 TTTTGAAAAGTGC
37941839 TTTTGAGAAA-TGC
1 TTTTGA-AAAGTGC
*
37941852 TTTTAAAAAGT
1 TTTTGAAAAGT
37941863 TTAGTTTAAA
Statistics
Matches: 52, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
12 7 0.13
13 40 0.77
14 5 0.10
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (13 bp):
TTTTGAAAAGTGC
Found at i:37942144 original size:8 final size:8
Alignment explanation
Indices: 37942131--37942157 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
37942121 TAAACTATAT
37942131 TTTAAATA
1 TTTAAATA
37942139 TTTAAATA
1 TTTAAATA
37942147 TTTAAATA
1 TTTAAATA
37942155 TTT
1 TTT
37942158 GTAATTAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (8 bp):
TTTAAATA
Found at i:37943017 original size:31 final size:31
Alignment explanation
Indices: 37942975--37943035 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
37942965 CAATTTGGTC
37942975 ACTGAAATATTCAAAAGTTTTCATTTAAGTT
1 ACTGAAATATTCAAAAGTTTTCATTTAAGTT
* *
37943006 ACTGAATTATTCAAAAGTTTTTATTTAAGT
1 ACTGAAATATTCAAAAGTTTTCATTTAAGT
37943036 CGCTAGGTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.38, C:0.08, G:0.10, T:0.44
Consensus pattern (31 bp):
ACTGAAATATTCAAAAGTTTTCATTTAAGTT
Found at i:37944247 original size:2 final size:2
Alignment explanation
Indices: 37944240--37944268 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
37944230 GTACCAACTG
37944240 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
37944269 ATGTTTACAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:37955646 original size:49 final size:49
Alignment explanation
Indices: 37955425--37955933 Score: 804
Period size: 49 Copynumber: 10.6 Consensus size: 49
37955415 CCCTTCGGGA
* * * * *
37955425 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37955472 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37955519 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37955566 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37955613 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37955662 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37955711 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37955758 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37955807 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37955856 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37955905 CTTATCACATATATATACACTTTCACATT
1 CTTATCACATATATATACACTTTCACATT
37955934 TATTCAAATA
Statistics
Matches: 438, Mismatches: 18, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
46 1 0.00
47 180 0.41
49 257 0.59
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:37955732 original size:145 final size:145
Alignment explanation
Indices: 37955425--37955933 Score: 846
Period size: 145 Copynumber: 3.5 Consensus size: 145
37955415 CCCTTCGGGA
* * * * * * * *
37955425 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
37955488 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCA
* * *
37955551 CATCGGCTATTAGGC
131 CATTGGCCATTCGGC
37955566 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
37955631 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCA
37955696 CATTGGCCATTCGGC
131 CATTGGCCATTCGGC
37955711 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
37955776 ACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCA
37955841 CATTGGCCATTCGGC
131 CATTGGCCATTCGGC
*
37955856 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
37955921 ACACTTTCACATT
64 ACACTTTCACATT
37955934 TATTCAAATA
Statistics
Matches: 347, Mismatches: 15, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
141 47 0.14
143 45 0.13
145 188 0.54
147 67 0.19
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (145 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCA
CATTGGCCATTCGGC
Found at i:37959290 original size:25 final size:25
Alignment explanation
Indices: 37959261--37959310 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
37959251 CAAACCTAGG
*
37959261 CTTTGTGGCGAGTTATTTGTAAAGC
1 CTTTGTGGCGAGTTATCTGTAAAGC
37959286 CTTTGTGGCGAGTTATCTGTAAAGC
1 CTTTGTGGCGAGTTATCTGTAAAGC
37959311 GCTTATGGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.20, C:0.14, G:0.28, T:0.38
Consensus pattern (25 bp):
CTTTGTGGCGAGTTATCTGTAAAGC
Found at i:37959350 original size:25 final size:23
Alignment explanation
Indices: 37959263--37959362 Score: 65
Period size: 25 Copynumber: 4.0 Consensus size: 23
37959253 AACCTAGGCT
* *
37959263 TTGTGGCGAGTTATTTGTAAAGCC
1 TTGTGGAGA-TTATCTGTAAAGCC
*
37959287 TTTGTGGCGAGTTATCTGTAAAGCGC
1 -TTGTGGAGA-TTATCTGTAAAGC-C
* *
37959313 TTATGGAAAATTATCTGTAAAGCTC
1 TTGTGG-AGATTATCTGTAAAGC-C
* **
37959338 TTGTGGTGTATTATCTAAAAAGCC
1 TTGTGGAG-ATTATCTGTAAAGCC
37959362 T
1 T
37959363 ATATGACGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
24 2 0.03
25 58 0.94
26 2 0.03
ACGTcount: A:0.26, C:0.13, G:0.24, T:0.37
Consensus pattern (23 bp):
TTGTGGAGATTATCTGTAAAGCC
Found at i:37959876 original size:25 final size:25
Alignment explanation
Indices: 37959847--37959929 Score: 114
Period size: 25 Copynumber: 3.3 Consensus size: 25
37959837 CAAACCTAGG
*
37959847 CTTTGTGGCGAGTTATTTGTAAAGC
1 CTTTGTGGCGAGTTATCTGTAAAGC
37959872 CTTTGTGGCGAGTTATCTGTAAAGC
1 CTTTGTGGCGAGTTATCTGTAAAGC
* * *
37959897 CCTTATGGCGAATTATCTGTAAAG-
1 CTTTGTGGCGAGTTATCTGTAAAGC
37959921 CTCTTGTGG
1 CT-TTGTGG
37959930 TGTATTATCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
24 1 0.02
25 50 0.98
ACGTcount: A:0.20, C:0.16, G:0.27, T:0.37
Consensus pattern (25 bp):
CTTTGTGGCGAGTTATCTGTAAAGC
Found at i:37959936 original size:25 final size:23
Alignment explanation
Indices: 37959849--37959953 Score: 93
Period size: 25 Copynumber: 4.2 Consensus size: 23
37959839 AACCTAGGCT
*
37959849 TTGTGGCGAGTTATTTGTAAAGCC
1 TTGTGGCGA-TTATCTGTAAAGCC
37959873 TTTGTGGCGAGTTATCTGTAAAGCCC
1 -TTGTGGCGA-TTATCTGTAAAG-CC
*
37959899 TTATGGCGAATTATCTGTAAAGCTC
1 TTGTGGCG-ATTATCTGTAAAGC-C
* **
37959924 TTGTGGTGTATTATCTAAAAAGCC
1 TTGTGGCG-ATTATCTGTAAAGCC
37959948 TATGTG
1 T-TGTG
37959954 ACGTATGTGA
Statistics
Matches: 69, Mismatches: 7, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
24 3 0.04
25 63 0.91
26 3 0.04
ACGTcount: A:0.24, C:0.14, G:0.25, T:0.37
Consensus pattern (23 bp):
TTGTGGCGATTATCTGTAAAGCC
Found at i:37959946 original size:50 final size:50
Alignment explanation
Indices: 37959852--37959947 Score: 115
Period size: 50 Copynumber: 1.9 Consensus size: 50
37959842 CTAGGCTTTG
* * **
37959852 TGGCGAGTTATTTGTAAAGCCTTTGTGGCGAGTTATCTGTAAAGCCCTTA
1 TGGCGAATTATCTGTAAAGCCTTTGTGGCGAGTTATCTAAAAAGCCCTTA
*
37959902 TGGCGAATTATCTGTAAAG-CTCTTGTGGTGTA-TTATCTAAAAAGCC
1 TGGCGAATTATCTGTAAAGCCT-TTGTGGCG-AGTTATCTAAAAAGCC
37959948 TATGTGACGT
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
49 2 0.05
50 36 0.92
51 1 0.03
ACGTcount: A:0.25, C:0.16, G:0.24, T:0.35
Consensus pattern (50 bp):
TGGCGAATTATCTGTAAAGCCTTTGTGGCGAGTTATCTAAAAAGCCCTTA
Found at i:37960127 original size:586 final size:585
Alignment explanation
Indices: 37959011--37960187 Score: 2111
Period size: 586 Copynumber: 2.0 Consensus size: 585
37959001 AATATGTAAT
37959011 ATGATAATGGATCCCGCGATGGTGCTTTGATGACGTTCGTTGGGACAGTAAACATGCGAAAGGGC
1 ATGATAATGGATCCCGCGATGGTGCTTTGATGACGTTCGTTGGGACAGTAAACATGCGAAAGGGC
* * * *
37959076 TAGTATAGAAGATATGTGGAATGACCATGACCATGGCATATTCTAGAAATAGTGGATGAGCCACA
66 CAGTATAGAAGATATGTGGAAAGACCACGACCATGGCATATTCTAGAAATAGCGGATGAGCCACA
* * *
37959141 CTTGTCTAGTAGGTTTCCTACATGTCCTAGGGGCGATAATGGGCAAATCTCAAGTGATGTTGAGT
131 CTTGTCTACTAGGTTTCCTACATGTCCTAGGGGCGATAATGGGAAAACCTCAAGTGATGTTGAGT
37959206 TTAGGTAAATCAATATTAGTTTTATATGGTGCCTTGGTGGCAAACCAAACCTAGGCTTTGTGGCG
196 TTAGGTAAATCAATATTAGTTTTATATGGTGCCTTGGTGGCAAACCAAACCTAGGCTTTGTGGCG
*
37959271 AGTTATTTGTAAAGCCTTTGTGGCGAGTTATCTGTAAAGCGCTTATGGAAAATTATCTGTAAAGC
261 AGTTATTTGTAAAGCCTTTGTGGCGAGTTATCTGTAAAGCCCTTATGGAAAATTATCTGTAAAGC
37959336 TCTTGTGGTGTATTATCTAAAAAGCCTATATGACGTATGTGACGTATTATTCGGAAAACCTATGT
326 TCTTGTGGTGTATTATCTAAAAAGCCTATATGACGTATGTGACGTATTATTCGGAAAACCTATGT
* *
37959401 GGCATATTATTCAAAAAGCCTTAGTGGCGAAGTTATTTGGGAAGCCCTTGTGGCAAGTCATCTAG
391 GGCATATTAATCAAAAAGCCTTAGTGGCGAAGTTATCTGGGAAGCCCTTGTGGCAAGTCATCTAG
37959466 AAAGTCTATTTGGTGAATTCTGTAACACCTAAGTGTGAGATGTTAGTCCGCCTTTGTGGTGAGAT
456 AAAGTCTATTTGGTGAATTCTGTAACACCTAAGTGTGAGATGTTAGTCCGCCTTTGTGGTGAGAT
*
37959531 CTGGGTATTCCTTTACGACATTTTTTGAAAGTGTTCCCTATAGTGTAACTGATGAATAAACCCAC
521 CTGCGTATTCCTTTACGACATTTTTTGAAAGTGTTCCCTATAGTGTAAC-GATGAATAAACCCAC
37959596 C
585 C
* *
37959597 ATGATAATGGATCCTGCGATGGTGCTTTGATGACGTTTGTTGGGACAGTAAACATGCGAAAGGGC
1 ATGATAATGGATCCCGCGATGGTGCTTTGATGACGTTCGTTGGGACAGTAAACATGCGAAAGGGC
*
37959662 CAGTATAGAAGATATGTGGAAAGACCACGGCCATGGCATATTCTAGAAATAGCGGATGAGCCACA
66 CAGTATAGAAGATATGTGGAAAGACCACGACCATGGCATATTCTAGAAATAGCGGATGAGCCACA
*
37959727 CTTGTCTACTAGGTTTCCTACATGTCCTAGGGGCGATGATGGGAAAACCTCAAGTGATGTTGAGT
131 CTTGTCTACTAGGTTTCCTACATGTCCTAGGGGCGATAATGGGAAAACCTCAAGTGATGTTGAGT
*
37959792 TTAGGTAAATCAATATTAGTTTTCTATGGTGCCTTGGTGGCAAACCAAACCTAGGCTTTGTGGCG
196 TTAGGTAAATCAATATTAGTTTTATATGGTGCCTTGGTGGCAAACCAAACCTAGGCTTTGTGGCG
**
37959857 AGTTATTTGTAAAGCCTTTGTGGCGAGTTATCTGTAAAGCCCTTATGGCGAATTATCTGTAAAGC
261 AGTTATTTGTAAAGCCTTTGTGGCGAGTTATCTGTAAAGCCCTTATGGAAAATTATCTGTAAAGC
* *
37959922 TCTTGTGGTGTATTATCTAAAAAGCCTATGTGACGTATGTGACGTATTATTTGGAAAACCTATGT
326 TCTTGTGGTGTATTATCTAAAAAGCCTATATGACGTATGTGACGTATTATTCGGAAAACCTATGT
* * *
37959987 GGCGTATTAATCAGAAAGCCTTAGTGGTGAAGTTATCTGGGAAGCCCTTGTGGCAAGTCATCTAG
391 GGCATATTAATCAAAAAGCCTTAGTGGCGAAGTTATCTGGGAAGCCCTTGTGGCAAGTCATCTAG
*
37960052 AAAGTCTATTTGGTGAATTTTGTAACACCTAAGTGTGAGATGTTAGTCCGCCTTTGTGGTGAGAT
456 AAAGTCTATTTGGTGAATTCTGTAACACCTAAGTGTGAGATGTTAGTCCGCCTTTGTGGTGAGAT
* *
37960117 CTGCGTATTCCTTTGCGGCATTTTTTGAAAGTGTTCCCTATAGTGTAACGATGAATAAACCCACC
521 CTGCGTATTCCTTTACGACATTTTTTGAAAGTGTTCCCTATAGTGTAACGATGAATAAACCCACC
37960182 ATGATA
1 ATGATA
37960188 GAGAACTTGG
Statistics
Matches: 565, Mismatches: 26, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
585 22 0.04
586 543 0.96
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (585 bp):
ATGATAATGGATCCCGCGATGGTGCTTTGATGACGTTCGTTGGGACAGTAAACATGCGAAAGGGC
CAGTATAGAAGATATGTGGAAAGACCACGACCATGGCATATTCTAGAAATAGCGGATGAGCCACA
CTTGTCTACTAGGTTTCCTACATGTCCTAGGGGCGATAATGGGAAAACCTCAAGTGATGTTGAGT
TTAGGTAAATCAATATTAGTTTTATATGGTGCCTTGGTGGCAAACCAAACCTAGGCTTTGTGGCG
AGTTATTTGTAAAGCCTTTGTGGCGAGTTATCTGTAAAGCCCTTATGGAAAATTATCTGTAAAGC
TCTTGTGGTGTATTATCTAAAAAGCCTATATGACGTATGTGACGTATTATTCGGAAAACCTATGT
GGCATATTAATCAAAAAGCCTTAGTGGCGAAGTTATCTGGGAAGCCCTTGTGGCAAGTCATCTAG
AAAGTCTATTTGGTGAATTCTGTAACACCTAAGTGTGAGATGTTAGTCCGCCTTTGTGGTGAGAT
CTGCGTATTCCTTTACGACATTTTTTGAAAGTGTTCCCTATAGTGTAACGATGAATAAACCCACC
Found at i:37969160 original size:21 final size:22
Alignment explanation
Indices: 37969112--37969160 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
37969102 TCTACCAACT
*
37969112 TACTTACCTTGAATAATTTTCA
1 TACTTACCTTGAATAATTTTAA
*
37969134 TGCTTACCTT-AAT-ATTTTAAA
1 TACTTACCTTGAATAATTTT-AA
37969155 TACTTA
1 TACTTA
37969161 TATTACTTGC
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 5 0.22
21 9 0.39
22 9 0.39
ACGTcount: A:0.33, C:0.16, G:0.04, T:0.47
Consensus pattern (22 bp):
TACTTACCTTGAATAATTTTAA
Found at i:37976603 original size:31 final size:31
Alignment explanation
Indices: 37976544--37976603 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
37976534 GTCACCGAAA
* *
37976544 TATTCAAAAGTTTTCATTTAATTTACTAAAC
1 TATTCAAAAGTTTTCATTTAACTCACTAAAC
*
37976575 TATTCAAAAGTTTTTATTTAACTCACTAA
1 TATTCAAAAGTTTTCATTTAACTCACTAA
37976604 GTTGTTAAGG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.38, C:0.13, G:0.03, T:0.45
Consensus pattern (31 bp):
TATTCAAAAGTTTTCATTTAACTCACTAAAC
Found at i:37988169 original size:18 final size:18
Alignment explanation
Indices: 37988146--37988180 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
37988136 GCATAAAAAA
37988146 AATTCAACTAA-AAATATT
1 AATTCAA-TAAGAAATATT
37988164 AATTCAATAAGAAATAT
1 AATTCAATAAGAAATAT
37988181 AAATGTGTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 3 0.19
18 13 0.81
ACGTcount: A:0.57, C:0.09, G:0.03, T:0.31
Consensus pattern (18 bp):
AATTCAATAAGAAATATT
Found at i:37990607 original size:27 final size:26
Alignment explanation
Indices: 37990550--37990607 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 26
37990540 TCTAACGGGC
*
37990550 TTACCCGTGTTTAATGTCCTGGTGGA
1 TTACCCGTGTTTAATGTCCTGGTAGA
* *
37990576 CTACCCTGTGTTTACTGT-CTAGGTAGA
1 TTACCC-GTGTTTAATGTCCT-GGTAGA
37990603 TTACC
1 TTACC
37990608 TATGCTTCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
26 7 0.27
27 19 0.73
ACGTcount: A:0.17, C:0.22, G:0.22, T:0.38
Consensus pattern (26 bp):
TTACCCGTGTTTAATGTCCTGGTAGA
Found at i:37996879 original size:882 final size:875
Alignment explanation
Indices: 37995422--37997493 Score: 2831
Period size: 882 Copynumber: 2.4 Consensus size: 875
37995412 AGAGAAGGAT
* * * *
37995422 GAATGAAGAATGAAATTCTGTGAAAAGTATT-TGCCAGAAACAAGTTAGAAGACCATATTATTAA
1 GAATGAAGAATAAAAATCTGAGAAAAGTATTCT-CCAGAAACAAGTTGGAAGACCATATTATTAA
* * *
37995486 ATAAGTTCTAA-CGATCCTTTAGTAACAATGTGCAAGCACTGTGCAGGTAAAAGGGATGTTTTTC
65 AGAAGTTCTAATC-ATCCTTTAGTAACAATGTGCAAGCATTGTGCAGGTAAAAGGGATGCTTTTC
* *
37995550 TCACTAAGTTTTGATATGCTTACATGAGTTTATGTTTTTGTTTCAGGTTGATTGTGAATATGTGA
129 TCACTAAGTTCTGATA-GCTTACATGAGTTTATGTTTTTGTTTTAGGTTGATTGTGAATATGTGA
* * * * * * *
37995615 CTGCCTTTGGATGTACTAAC-GTCCAGAGAT-TGAATATTGTAATAAAATAT-AAATACAAGGCG
193 CCGCC-TCGGACGTACTAGCATTCCAGAG-TGTGAAAATTTTAATAAAATATGAAATACAAGGCG
* * *
37995677 ATATTCGCAAGTATACAGGTCGAGTTATAATATAGTTTTACAATGATGTAGGTGAGTACTCTGAG
256 ATATCCGCAAGTATACAGGTCGAGTTGTAATATAGTTTTACAATGATATAGGTGAGTACTCTGAG
*
37995742 GATCGTACCCAAGGAGACGACTACCAGATCAATTCTAACCTAAACACTAAAGGATCTAATTAGTA
321 GATCGTACCCAAGGAGACGACTACCAAATCAATTCTAACCTAAACACTAAAGGATCTAATTAGTA
37995807 CGTTAAATTAGTTATAGTACGAAAGCATAAAATAAAGGATCTTTAGGGTTGTAATAATAAAACAA
386 CGTTAAATTAGTTATAGTACGAAAGCATAAAATAAAGGATCTTTAGGGTTGTAATAATAAAACAA
* * * * * *
37995872 AATATTAAAAAGTAATAAACTTCAAGAGATAGAAATGGTGAATGAATCAAATCTTTATTATGGGT
451 AATATTAAAAAGGAATAAACTTCAAGAGATAAAAAAGGAGAATAAATCAAATCTTAATTATGGGT
* * * *
37995937 GATTAGCTCGCTTCGGTAATCCCTATTAACTTTCGTTTCAGGTTCCTCGTCAATCAACTAGTTGC
516 GATTAGCTCGCTTCGGTAATCCCTAGTAACTGTCATTTCAGATTCCTCGTCAATCAACTAGTTGC
* * *
37996002 TACCTTAGTAGGATCTTTTGATCTTCCATTAACGTAATGAGTCAGCAAGGATTGCTTATCTTCTG
581 TACCCTAGTAGGATCTTTTGATCTTCCATTAACATAACGAGTCAGCAAGGATTGCTTATCTTCTG
* *
37996067 ACCTCACAGTCTAGACTGGCTTGGTGTGAAGGTGTTCATAGATGGATTATACCAAATTTGGGTTA
646 ACCTCACAGTCCAGACTGGCTTGGTGTGAAGGTGTTCATAGATGGATCATACCAAATTTGGGTTA
* * *
37996132 ATTCCCACCTTGATGACTTCCTAGGGTTGTCAGGCCTAGGTTTTGTTTCATG-TTCATCATTTCC
711 ATTCCCACCTTGATGACTTCATAGGGTTGTCAAGCCTAGGTTTTGTTTCATGCCT-ATCATTTCC
* * **
37996196 CAAATAG-TGGATCTGTTGAGTAACCCTACAAAATAGTCAATAGATCATAACTTCACTCGTTAAT
775 CAAATAGCT-AATCTGTTGAGTAACCCTACAAAATAGTCAATAGATCATAACTCCACTCACTAAT
* * * *
37996260 CCCCCAAAGGGGGATTATTTCCTCATGGAAGAATGAG
839 CCACCAAAGAGGGATTAGTTCCTCATGGAAGAATGAA
*
37996297 GAATGAAGAATAAAAATCTGAGAAAAGTATTCTCCAGAAACAAGTTGGAAGACCAGATTATTAAA
1 GAATGAAGAATAAAAATCTGAGAAAAGTATTCTCCAGAAACAAGTTGGAAGACCATATTATTAAA
* * * * ** *
37996362 GAAGTTCTAATCATCCTTCAATAACAATGTGCAAGCATTCTGCAGGGAAAAAATGATGCTTTTAT
66 GAAGTTCTAATCATCCTTTAGTAACAATGTGCAAGCATTGTGCA-GGTAAAAGGGATGCTTTTCT
* *
37996427 CACTAAATTCTGATGAGCTTACATGAGTTTCTGTTTTTGTTTTAGGTTGATTGTGAATATGTGAC
130 CACTAAGTTCTGAT-AGCTTACATGAGTTTATGTTTTTGTTTTAGGTTGATTGTGAATATGTGAC
* * *
37996492 CGCCTACGGACGTACTAGCATTCCA-AGTGTGAAAATTTTAATAAAATATAGAAAAATAAGGCGT
194 CGCCT-CGGACGTACTAGCATTCCAGAGTGTGAAAATTTTAATAAAATAT-GAAATACAAGGCGA
* * * * *
37996556 TATCCCCAAGTAAACATGTCAAGTTGTAATATAGTTTTACAATGATATAGGTGAGTACTCTGAGT
257 TATCCGCAAGTATACAGGTCGAGTTGTAATATAGTTTTACAATGATATAGGTGAGTACTCTGAGG
* * * * *
37996621 ATTGTACTCAAGGGAGGCGAGTGCCAAATCAATTCTAACCTAAACACTAAAGGATCTAATTAGTA
322 ATCGTACCCAA-GGAGACGACTACCAAATCAATTCTAACCTAAACACTAAAGGATCTAATTAGTA
* ** *
37996686 CTTTAAATTAGTTATAGTACGAAAGCATAAAATAACTGAT-TTCTAGGGTTTTTAGAATAATAAA
386 CGTTAAATTAGTTATAGTACGAAAGCATAAAATAAAGGATCTT-TAGGG-TTGT--AATAATAAA
* * * *
37996750 ACAAAATATTAAAATGGAATAAACTTTAAGTGATAAAAAAGGAGAATAAATTAAATCTTAATTAT
447 ACAAAATATTAAAAAGGAATAAACTTCAAGAGATAAAAAAGGAGAATAAATCAAATCTTAATTAT
*
37996815 GGGTGATTAGCTCGCTTCGGTAATCCCTAGTAACTGTCATTTCAGATTCCTTGTCAATCAACTAG
512 GGGTGATTAGCTCGCTTCGGTAATCCCTAGTAACTGTCATTTCAGATTCCTCGTCAATCAACTAG
37996880 TTGCTACCCTAGTAGGATCTTTTGATCTTCCATTAACATAACGAGTCAGCAAGGATTGCTTATCT
577 TTGCTACCCTAGTAGGATCTTTTGATCTTCCATTAACATAACGAGTCAGCAAGGATTGCTTATCT
* *
37996945 TCTGACCTTACAGTCCAGACTGGCTTGGTGTGAAGGTGTTCATAGATGGGTCATACCAAATTTGG
642 TCTGACCTCACAGTCCAGACTGGCTTGGTGTGAAGGTGTTCATAGATGGATCATACCAAATTTGG
* * *
37997010 GTTAATTCCCACCTTGATGACTTCATGGGGTTGTCAAGCCTAGGTTTTGTTTCATGCCTGTCCTT
707 GTTAATTCCCACCTTGATGACTTCATAGGGTTGTCAAGCCTAGGTTTTGTTTCATGCCTATCATT
* *
37997075 TCCTAAATAGCTAATCTGTTGAGTAACCCTACAAAATAGTCAATAGATCATACCTCCACTCACTA
772 TCCCAAATAGCTAATCTGTTGAGTAACCCTACAAAATAGTCAATAGATCATAACTCCACTCACTA
*
37997140 ATCCACGAAAGAGGGATTAGTTCCTCATGGAAGAATGAA
837 ATCCACCAAAGAGGGATTAGTTCCTCATGGAAGAATGAA
* * * * * * *
37997179 GAATGAAGACTAAATATCTGGGAAAAGCATTCGCCATAAACAAGTTGCAAGACCATATTATTAAA
1 GAATGAAGAATAAAAATCTGAGAAAAGTATTCTCCAGAAACAAGTTGGAAGACCATATTATTAAA
* * *
37997244 GAAGTTCAAATGATCCTTTAGTAACAATGTGCAAGCATTGTGCAGGTAAGAGGGATGCTTTTCTC
66 GAAGTTCTAATCATCCTTTAGTAACAATGTGCAAGCATTGTGCAGGTAAAAGGGATGCTTTTCTC
* * * * *
37997309 TA-TAAGTTCTGATTAGCTTACATGAGTTTATGATTTTG-CTTATGGATGGTTGTGAATATGTGG
131 -ACTAAGTTCTGA-TAGCTTACATGAGTTTATGTTTTTGTTTTA-GGTTGATTGTGAATATGTGA
* * * * * * *
37997372 CCACCTCTGTACGTAC--GAATATCCAGAGTGAGAATACTGTT-ACAAAATATTGAAATACAAGG
193 CCGCCTC-GGACGTACTAGCAT-TCCAGAGTGTGAA-AATTTTAATAAAATA-TGAAATACAAGG
* * * *
37997434 CGATATCTGCAAGTATACAGGTCGAGTTGTAATATAATTTTACAACGATATAAGTGAGTA
254 CGATATCCGCAAGTATACAGGTCGAGTTGTAATATAGTTTTACAATGATATAGGTGAGTA
37997494 ATCTAATTAC
Statistics
Matches: 1044, Mismatches: 129, Indels: 42
0.86 0.11 0.03
Matches are distributed among these distances:
875 97 0.09
876 109 0.10
877 5 0.00
878 78 0.07
879 94 0.09
880 11 0.01
881 150 0.14
882 498 0.48
883 2 0.00
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.32
Consensus pattern (875 bp):
GAATGAAGAATAAAAATCTGAGAAAAGTATTCTCCAGAAACAAGTTGGAAGACCATATTATTAAA
GAAGTTCTAATCATCCTTTAGTAACAATGTGCAAGCATTGTGCAGGTAAAAGGGATGCTTTTCTC
ACTAAGTTCTGATAGCTTACATGAGTTTATGTTTTTGTTTTAGGTTGATTGTGAATATGTGACCG
CCTCGGACGTACTAGCATTCCAGAGTGTGAAAATTTTAATAAAATATGAAATACAAGGCGATATC
CGCAAGTATACAGGTCGAGTTGTAATATAGTTTTACAATGATATAGGTGAGTACTCTGAGGATCG
TACCCAAGGAGACGACTACCAAATCAATTCTAACCTAAACACTAAAGGATCTAATTAGTACGTTA
AATTAGTTATAGTACGAAAGCATAAAATAAAGGATCTTTAGGGTTGTAATAATAAAACAAAATAT
TAAAAAGGAATAAACTTCAAGAGATAAAAAAGGAGAATAAATCAAATCTTAATTATGGGTGATTA
GCTCGCTTCGGTAATCCCTAGTAACTGTCATTTCAGATTCCTCGTCAATCAACTAGTTGCTACCC
TAGTAGGATCTTTTGATCTTCCATTAACATAACGAGTCAGCAAGGATTGCTTATCTTCTGACCTC
ACAGTCCAGACTGGCTTGGTGTGAAGGTGTTCATAGATGGATCATACCAAATTTGGGTTAATTCC
CACCTTGATGACTTCATAGGGTTGTCAAGCCTAGGTTTTGTTTCATGCCTATCATTTCCCAAATA
GCTAATCTGTTGAGTAACCCTACAAAATAGTCAATAGATCATAACTCCACTCACTAATCCACCAA
AGAGGGATTAGTTCCTCATGGAAGAATGAA
Found at i:38007061 original size:50 final size:50
Alignment explanation
Indices: 38006925--38007071 Score: 136
Period size: 50 Copynumber: 2.8 Consensus size: 50
38006915 AGATCCAATG
*
38006925 TAAGACCATGTCTGGGACATGGCATCGGCATCCTTGAGATCATGAGAGGTCCCACG
1 TAAGACCATGTCTGGGACATGGCATCGGCA-CC--GAG---ATGAGAGGTCCCACA
* * *
38006981 TAAGACCATGTCTAGGACATGG-AGTTGGCACCGAGATGAGAGGT-CCATTA
1 TAAGACCATGTCTGGGACATGGCA-TCGGCACCGAGATGAGAGGTCCCA-CA
* * * *
38007031 TAAGACCATGTCTGGGTCATGGCATGGGCACCAATATGAGA
1 TAAGACCATGTCTGGGACATGGCATCGGCACCGAGATGAGA
38007072 ACTCTTATGT
Statistics
Matches: 79, Mismatches: 9, Indels: 12
0.79 0.09 0.12
Matches are distributed among these distances:
49 3 0.04
50 43 0.54
51 1 0.01
53 3 0.04
55 3 0.04
56 26 0.33
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (50 bp):
TAAGACCATGTCTGGGACATGGCATCGGCACCGAGATGAGAGGTCCCACA
Found at i:38009765 original size:49 final size:49
Alignment explanation
Indices: 38009645--38009771 Score: 159
Period size: 49 Copynumber: 2.6 Consensus size: 49
38009635 ACGAGAGGTA
*
38009645 CCATGTAAGACCATGTCTGGGACATGGCATGGACACCGATATGAGAACTC
1 CCATGTAAGACCATGTCTGGGACATGGCATGGACA-CGATATCAGAACTC
* * * *
38009695 CCTTGTAAGACCATATCTGGGATATGGCATTGACA-GTATATCA-AACATC
1 CCATGTAAGACCATGTCTGGGACATGGCATGGACACG-ATATCAGAAC-TC
*
38009744 CCATGTAAGACCATGTTTGGGACATGGC
1 CCATGTAAGACCATGTCTGGGACATGGC
38009772 TTTGGCATGT
Statistics
Matches: 66, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
48 4 0.06
49 31 0.47
50 31 0.47
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (49 bp):
CCATGTAAGACCATGTCTGGGACATGGCATGGACACGATATCAGAACTC
Found at i:38016728 original size:50 final size:50
Alignment explanation
Indices: 38016601--38016833 Score: 177
Period size: 50 Copynumber: 4.6 Consensus size: 50
38016591 GTAAAGAGAT
* * * *
38016601 CCCATGTATGACCATGTCTGGGACATGGCATCGGCATCCTTGAGATCATG-ACA
1 CCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--AAGATGA-GAACA
* * * **
38016654 GGTCCCATGTAAGACCAAGTCTGGGACATGGCGTTGGCACCAAGATGAGATGA
1 ---CCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCAAGATGAGAACA
* * *
38016707 CCC-TCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAACT
1 CCCAT-GTAAGACCATGTCTGGGACATGGCATGGGCACCAAGATGAGAACA
* * * * ** *
38016757 CCCATGTAAGACCATATCTGGGATATGACATTGGCA-GTACATGA-AACA
1 CCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCAAGATGAGAACA
*
38016805 TCCCATGTAAGACCATGTTTGGGACATGG
1 -CCCATGTAAGACCATGTCTGGGACATGG
38016834 ATTTGGCATG
Statistics
Matches: 145, Mismatches: 28, Indels: 15
0.77 0.15 0.08
Matches are distributed among these distances:
48 3 0.02
49 30 0.21
50 70 0.48
51 1 0.01
52 1 0.01
53 6 0.04
55 2 0.01
56 32 0.22
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.22
Consensus pattern (50 bp):
CCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCAAGATGAGAACA
Found at i:38045003 original size:34 final size:34
Alignment explanation
Indices: 38044927--38045010 Score: 93
Period size: 34 Copynumber: 2.4 Consensus size: 34
38044917 TTCCGAAAAA
38044927 AAGAA-AAAAAAAAGAAGAAATAGGGAAAGTGAAT
1 AAGAACAAAAAAAAGAAGAAATAGGGAAAGTG-AT
*
38044961 AAGAAACAAAAAAAAGAAAGGAAATA-GGAAGGTG-T
1 AAG-AACAAAAAAAAG-AA-GAAATAGGGAAAGTGAT
*
38044996 AAGAACAAAGAAAAG
1 AAGAACAAAAAAAAG
38045011 TGATTGAGAG
Statistics
Matches: 44, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
34 14 0.32
35 6 0.14
36 9 0.20
37 9 0.20
38 6 0.14
ACGTcount: A:0.67, C:0.02, G:0.24, T:0.07
Consensus pattern (34 bp):
AAGAACAAAAAAAAGAAGAAATAGGGAAAGTGAT
Found at i:38046046 original size:42 final size:42
Alignment explanation
Indices: 38045972--38046444 Score: 573
Period size: 42 Copynumber: 11.3 Consensus size: 42
38045962 AAAGAAAACA
* *
38045972 TTCATTGCATTTAGGGGCCCAGGTGTGGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGACCAGGTGTGGAGGTCCATTTACTT
* * *
38046014 TTCATTGCATTTAGAGGACCAGATGTGCAGGTCCATTTATTT
1 TTCATTGCATTTAGAGGACCAGGTGTGGAGGTCCATTTACTT
*
38046056 TTCATTGCATTTAGAGG-CCTAGGTGTGGAGGTCCATTCACTT
1 TTCATTGCATTTAGAGGACC-AGGTGTGGAGGTCCATTTACTT
* * * * *
38046098 TTCAATACATTTAGAGG-CAAAGGTCTGGAGGTTCATTTACTT
1 TTCATTGCATTTAGAGGAC-CAGGTGTGGAGGTCCATTTACTT
* * * *
38046140 TTCATTGCATTTAGAGGCCCAGGTGTTGAGGTTCATTCACTT
1 TTCATTGCATTTAGAGGACCAGGTGTGGAGGTCCATTTACTT
* * *
38046182 TTCATTGCATTTA-AAGACCCAGGTGTGGAGCTCCATTGACTT
1 TTCATTGCATTTAGAGGA-CCAGGTGTGGAGGTCCATTTACTT
* * * *
38046224 TTCATTGCATTTAAAGGCCCAAGTATGGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGACCAGGTGTGGAGGTCCATTTACTT
38046266 TTCATTGCATTTAGA-GACCCAGGTGTGGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGA-CCAGGTGTGGAGGTCCATTTACTT
* *
38046308 TTCATTGCATTTAGA-GACCCAGGTGTTGAGGTCCATTCACTT
1 TTCATTGCATTTAGAGGA-CCAGGTGTGGAGGTCCATTTACTT
* * *
38046350 TTCATTACATTTAGA-GACCCAAGTGTGGAGGTCCATTCACTT
1 TTCATTGCATTTAGAGGA-CCAGGTGTGGAGGTCCATTTACTT
* *
38046392 TTCATTACATTTATA-GACCCAGGTGTGGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGA-CCAGGTGTGGAGGTCCATTTACTT
38046434 TTCATTGCATT
1 TTCATTGCATT
38046445 GACTTTTCAT
Statistics
Matches: 379, Mismatches: 46, Indels: 12
0.87 0.11 0.03
Matches are distributed among these distances:
41 5 0.01
42 371 0.98
43 3 0.01
ACGTcount: A:0.23, C:0.19, G:0.22, T:0.36
Consensus pattern (42 bp):
TTCATTGCATTTAGAGGACCAGGTGTGGAGGTCCATTTACTT
Found at i:38046113 original size:84 final size:84
Alignment explanation
Indices: 38045972--38046444 Score: 651
Period size: 84 Copynumber: 5.6 Consensus size: 84
38045962 AAAGAAAACA
* *
38045972 TTCATTGCATTTAGGGGCCCAGGTGTGGAGGTCCATTTACTTTTCATTGCATTTAGAGGA-CCAG
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTCACTTTTCATTGCATTTAGA-GACCCAG
* * *
38046036 ATGTGCAGGTCCATTTATTT
65 GTGTGGAGGTCCATTTACTT
* * * * **
38046056 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTCACTTTTCAATACATTTAGAGGCAAAGG
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTCACTTTTCATTGCATTTAGAGACCCAGG
* *
38046121 TCTGGAGGTTCATTTACTT
66 TGTGGAGGTCCATTTACTT
* * *
38046140 TTCATTGCATTTAGAGGCCCAGGTGTTGAGGTTCATTCACTTTTCATTGCATTTAAAGACCCAGG
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTCACTTTTCATTGCATTTAGAGACCCAGG
* *
38046205 TGTGGAGCTCCATTGACTT
66 TGTGGAGGTCCATTTACTT
* * * *
38046224 TTCATTGCATTTAAAGGCCCAAGTATGGAGGTCCATTTACTTTTCATTGCATTTAGAGACCCAGG
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTCACTTTTCATTGCATTTAGAGACCCAGG
38046289 TGTGGAGGTCCATTTACTT
66 TGTGGAGGTCCATTTACTT
* * * *
38046308 TTCATTGCATTTAGAGACCCAGGTGTTGAGGTCCATTCACTTTTCATTACATTTAGAGACCCAAG
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTCACTTTTCATTGCATTTAGAGACCCAGG
*
38046373 TGTGGAGGTCCATTCACTT
66 TGTGGAGGTCCATTTACTT
* * * *
38046392 TTCATTACATTTATAGACCCAGGTGTGGAGGTCCATTTACTTTTCATTGCATT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTCACTTTTCATTGCATT
38046445 GACTTTTCAT
Statistics
Matches: 339, Mismatches: 49, Indels: 2
0.87 0.13 0.01
Matches are distributed among these distances:
83 1 0.00
84 338 1.00
ACGTcount: A:0.23, C:0.19, G:0.22, T:0.36
Consensus pattern (84 bp):
TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTCACTTTTCATTGCATTTAGAGACCCAGG
TGTGGAGGTCCATTTACTT
Found at i:38046184 original size:126 final size:125
Alignment explanation
Indices: 38045972--38046444 Score: 651
Period size: 126 Copynumber: 3.8 Consensus size: 125
38045962 AAAGAAAACA
* * *
38045972 TTCATTGCATTTAGGGGCCCAGGTGTGGAGGTCCATTTACTTTTCATTGCATTTAGAGGA-CCAG
1 TTCATTACATTTAGAGG-CCAAGTGTGGAGGTCCATTTACTTTTCATTGCATTTAGA-GACCCAG
* * * * *
38046036 ATGTGCAGGTCCATTTATTTTTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTCACTT
64 GTGTGGAGGTCCATTTACTTTTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTCACTT
* * * * *
38046098 TTCAATACATTTAGAGGCAAAGGTCTGGAGGTTCATTTACTTTTCATTGCATTTAGAGGCCCAGG
1 TTCATTACATTTAGAGGCCAA-GTGTGGAGGTCCATTTACTTTTCATTGCATTTAGAGACCCAGG
* * * * * *
38046163 TGTTGAGGTTCATTCACTTTTCATTGCATTTAAAGACCCAGGTGTGGAGCTCCATTGACTT
65 TGTGGAGGTCCATTTACTTTTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTCACTT
* * *
38046224 TTCATTGCATTTAAAGGCCCAAGTATGGAGGTCCATTTACTTTTCATTGCATTTAGAGACCCAGG
1 TTCATTACATTTAGAGG-CCAAGTGTGGAGGTCCATTTACTTTTCATTGCATTTAGAGACCCAGG
*
38046289 TGTGGAGGTCCATTTACTTTTCATTGCATTTAGAGACCCAGGTGTTGAGGTCCATTCACTT
65 TGTGGAGGTCCATTTACTTTTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTCACTT
* * * *
38046350 TTCATTACATTTAGAGACCCAAGTGTGGAGGTCCATTCACTTTTCATTACATTTATAGACCCAGG
1 TTCATTACATTTAGAG-GCCAAGTGTGGAGGTCCATTTACTTTTCATTGCATTTAGAGACCCAGG
38046415 TGTGGAGGTCCATTTACTTTTCATTGCATT
65 TGTGGAGGTCCATTTACTTTTCATTGCATT
38046445 GACTTTTCAT
Statistics
Matches: 303, Mismatches: 40, Indels: 8
0.86 0.11 0.02
Matches are distributed among these distances:
125 3 0.01
126 297 0.98
127 3 0.01
ACGTcount: A:0.23, C:0.19, G:0.22, T:0.36
Consensus pattern (125 bp):
TTCATTACATTTAGAGGCCAAGTGTGGAGGTCCATTTACTTTTCATTGCATTTAGAGACCCAGGT
GTGGAGGTCCATTTACTTTTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTCACTT
Found at i:38046449 original size:16 final size:16
Alignment explanation
Indices: 38046425--38046460 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
38046415 TGTGGAGGTC
* *
38046425 CATTTACTTTTCATTG
1 CATTGACTTTTCATTA
38046441 CATTGACTTTTCATTA
1 CATTGACTTTTCATTA
38046457 CATT
1 CATT
38046461 TAGAGGCCCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.22, C:0.19, G:0.06, T:0.53
Consensus pattern (16 bp):
CATTGACTTTTCATTA
Found at i:38047396 original size:156 final size:156
Alignment explanation
Indices: 38047163--38047570 Score: 583
Period size: 156 Copynumber: 2.6 Consensus size: 156
38047153 TGATATTTTT
* * * *
38047163 AAAAAACAGAAAGTTAAGATTTT-AACAAAT-AAAA-ATGTTTTTTTT-TTTATTTTAAAGGAAA
1 AAAAAAGAGAAAGTTTAGATTTTGAA-AAATAAAAATATGTTTTTTTTAGTCATTTTAAAGGAAA
* * * * *
38047224 GTTTAAATTTTTAAAACAAAGTTTAGATTTTTTTCAACTATTTCAAAGTAAAAGCTTTAATCTTT
65 GTTTAAAATTTTAAAACAAAGTTTTGATTTTTTTCAACTACTCCAAAATAAAAGCTTTAATCTTT
38047289 AAGAAAAATAGTGTTTTTTTAAAT-AA
130 AAGAAAAATAGTGTTTTTTTAAATAAA
* * *
38047315 AAAAAAGTAGAAAGTTTAGTTTTTGAAAATTAAAAATCTGTTTTTTTTAGTCATTTTAAAGGAAA
1 AAAAAAG-AGAAAGTTTAGATTTTGAAAAATAAAAATATGTTTTTTTTAGTCATTTTAAAGGAAA
*
38047380 GTTTAAAATTTTAAAACAAAGTTTTGGTTTTTTTCAACTACTCCAAAATAAAAGCTTTAATCTTT
65 GTTTAAAATTTTAAAACAAAGTTTTGATTTTTTTCAACTACTCCAAAATAAAAGCTTTAATCTTT
* ***
38047445 AAGAAAGATAGTGTTTTTTTTTTTAAA
130 AAGAAAAATAGTGTTTTTTTAAATAAA
*
38047472 AAAAAAGAGAAAGTTTAGATTTTGAAAAATAAAAATATGTTTTTTTTAAGTCATTTTAAAGAAAA
1 AAAAAAGAGAAAGTTTAGATTTTGAAAAATAAAAATATGTTTTTTTT-AGTCATTTTAAAGGAAA
*
38047537 GTTTAAAATTTTTAAACAAAGTTTTGATTTTTTT
65 GTTTAAAATTTTAAAACAAAGTTTTGATTTTTTT
38047571 TAAGTTTGGA
Statistics
Matches: 226, Mismatches: 23, Indels: 9
0.88 0.09 0.03
Matches are distributed among these distances:
152 6 0.03
153 17 0.08
154 6 0.03
155 10 0.04
156 130 0.58
157 57 0.25
ACGTcount: A:0.42, C:0.05, G:0.11, T:0.42
Consensus pattern (156 bp):
AAAAAAGAGAAAGTTTAGATTTTGAAAAATAAAAATATGTTTTTTTTAGTCATTTTAAAGGAAAG
TTTAAAATTTTAAAACAAAGTTTTGATTTTTTTCAACTACTCCAAAATAAAAGCTTTAATCTTTA
AGAAAAATAGTGTTTTTTTAAATAAA
Found at i:38050320 original size:45 final size:45
Alignment explanation
Indices: 38050256--38050351 Score: 151
Period size: 45 Copynumber: 2.1 Consensus size: 45
38050246 AGCAAGGCAA
38050256 TAATGTGAAATTTCTAGCTAATGTTCCATTATATAAACAAT-AGGC
1 TAATGTGAAATTTCTAGCTAATGTTCCATTATATAAACAATCA-GC
*
38050301 TAATGTGAAATTT-TGAGCTAATTTTCCATTATATAAACAATCAGC
1 TAATGTGAAATTTCT-AGCTAATGTTCCATTATATAAACAATCAGC
38050346 TAATGT
1 TAATGT
38050352 TCCATTTATA
Statistics
Matches: 48, Mismatches: 1, Indels: 4
0.91 0.02 0.08
Matches are distributed among these distances:
44 1 0.02
45 46 0.96
46 1 0.02
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (45 bp):
TAATGTGAAATTTCTAGCTAATGTTCCATTATATAAACAATCAGC
Found at i:38051809 original size:10 final size:10
Alignment explanation
Indices: 38051794--38051825 Score: 64
Period size: 10 Copynumber: 3.2 Consensus size: 10
38051784 GCCTAAAATT
38051794 ATATATAATG
1 ATATATAATG
38051804 ATATATAATG
1 ATATATAATG
38051814 ATATATAATG
1 ATATATAATG
38051824 AT
1 AT
38051826 GGGGATGACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (10 bp):
ATATATAATG
Found at i:38070085 original size:232 final size:232
Alignment explanation
Indices: 38069651--38070123 Score: 711
Period size: 232 Copynumber: 2.0 Consensus size: 232
38069641 CGTCATGGAT
* * * * *
38069651 TGAG-TATATTAAGGGTAAGTAGTTTGAGGATGAGTTGTTGGGTCTTCGATTCCGACAGATTGAG
1 TGAGTTATATGAAAGGTAAGCAGTTGGAGGATGAGTTGTTGGGTCTTCGATTCAGACAGATTGAG
* *
38069715 GGTGGTAGTACTACGGATTTTAGACTAAACAGTGATGGGGTACTCTGTTTTCGTGGGAGAATCTG
66 GGTGGTAGTACTACGAATTTTAGACTAAACAGTGATGGGGTACTCTATTTTCGTGGGAGAATCTG
* * *
38069780 TGTTCCGAATAATCCTAATTTGAGACAGGCAATACTGAGAGAGGCGCTTAGTAGCCCTTATGCTA
131 TGTTCCGAATAATACTAATTTGAGACAGGCAATACTGAGAGAGGCACATAGTAGCCCTTATGCTA
*
38069845 TACATCCTGGCAGAAATAAGATGTACCGAGGCCTCCG
196 TACATCCTGGCAGAAATAAGATGTACCGAGACCTCCG
38069882 TGAGTTATATGAAAGGTAAGCAGTTGGAGGATGAGTCT-TTGGGTCTTCGATTCTAG-CAGATTG
1 TGAGTTATATGAAAGGTAAGCAGTTGGAGGATGAGT-TGTTGGGTCTTCGATTC-AGACAGATTG
* * * *
38069945 AGGGTGGTAGTACTATGAATTTTGGACTGAACAGTGATGGGGTGCTCTATTTTCGTGGGAGAATC
64 AGGGTGGTAGTACTACGAATTTTAGACTAAACAGTGATGGGGTACTCTATTTTCGTGGGAGAATC
* * *
38070010 TGTGTTTCGAATGATACTAATTTGAGACAGGCCATACTGAGAGA-GCAACATAGTAGCCCTTATG
129 TGTGTTCCGAATAATACTAATTTGAGACAGGCAATACTGAGAGAGGC-ACATAGTAGCCCTTATG
* *
38070074 CTATGCATCCTGGCAGAAATAAGATGTACCGAGACCTCTG
193 CTATACATCCTGGCAGAAATAAGATGTACCGAGACCTCCG
38070114 TGAGTTATAT
1 TGAGTTATAT
38070124 TGGTGCCCAG
Statistics
Matches: 218, Mismatches: 20, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
231 6 0.03
232 210 0.96
233 2 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (232 bp):
TGAGTTATATGAAAGGTAAGCAGTTGGAGGATGAGTTGTTGGGTCTTCGATTCAGACAGATTGAG
GGTGGTAGTACTACGAATTTTAGACTAAACAGTGATGGGGTACTCTATTTTCGTGGGAGAATCTG
TGTTCCGAATAATACTAATTTGAGACAGGCAATACTGAGAGAGGCACATAGTAGCCCTTATGCTA
TACATCCTGGCAGAAATAAGATGTACCGAGACCTCCG
Found at i:38076979 original size:24 final size:24
Alignment explanation
Indices: 38076932--38076981 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
38076922 AGAAAAAAAT
* * **
38076932 ATAACAGTAGATGTAGCCGCTAAC
1 ATAAAAGTAGAAGTAGCCAATAAC
38076956 ATAAAAGTAGAAGTAGCCAATAAC
1 ATAAAAGTAGAAGTAGCCAATAAC
38076980 AT
1 AT
38076982 GGAGCGTAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.46, C:0.16, G:0.18, T:0.20
Consensus pattern (24 bp):
ATAAAAGTAGAAGTAGCCAATAAC
Found at i:38084138 original size:12 final size:12
Alignment explanation
Indices: 38084121--38084155 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
38084111 TTGTTACAAG
38084121 GCCTAGCACATT
1 GCCTAGCACATT
38084133 GCCTAGCACATT
1 GCCTAGCACATT
38084145 GCCTAGCACAT
1 GCCTAGCACAT
38084156 GGTCGTGTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.26, C:0.34, G:0.17, T:0.23
Consensus pattern (12 bp):
GCCTAGCACATT
Found at i:38090232 original size:19 final size:19
Alignment explanation
Indices: 38090177--38090233 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 19
38090167 GAGTTTGATA
*
38090177 TTGAGCCAGATGCTTTATT
1 TTGAACCAGATGCTTTATT
38090196 TT-AA-CA-AT--TTTGATT
1 TTGAACCAGATGCTTT-ATT
38090211 TTGAACCAGATGCTTTATT
1 TTGAACCAGATGCTTTATT
38090230 TTGA
1 TTGA
38090234 TCCAATTATT
Statistics
Matches: 31, Mismatches: 1, Indels: 12
0.70 0.02 0.27
Matches are distributed among these distances:
14 3 0.10
15 5 0.16
16 4 0.13
17 4 0.13
18 3 0.10
19 9 0.29
20 3 0.10
ACGTcount: A:0.26, C:0.12, G:0.16, T:0.46
Consensus pattern (19 bp):
TTGAACCAGATGCTTTATT
Found at i:38091571 original size:20 final size:20
Alignment explanation
Indices: 38091543--38091584 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
38091533 AATAGATGCT
38091543 AACAAAGGCACCAAAGTGCA
1 AACAAAGGCACCAAAGTGCA
* **
38091563 AACAGAGGCACTGAAGTGCA
1 AACAAAGGCACCAAAGTGCA
38091583 AA
1 AA
38091585 TCTCATACAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.21, G:0.24, T:0.07
Consensus pattern (20 bp):
AACAAAGGCACCAAAGTGCA
Found at i:38093284 original size:23 final size:23
Alignment explanation
Indices: 38093212--38093451 Score: 160
Period size: 23 Copynumber: 10.4 Consensus size: 23
38093202 GTCGATTACA
* **
38093212 CCACAAAGGCCAAACAGAATATT
1 CCACAAAGGCCAAATAGAATACG
* * * * *
38093235 CCATAATGGCTAAACAAAATACG
1 CCACAAAGGCCAAATAGAATACG
*
38093258 CCACAAAGGCCAAATAGAGTACG
1 CCACAAAGGCCAAATAGAATACG
*
38093281 CCACAAAGGCCAAATAGAATATG
1 CCACAAAGGCCAAATAGAATACG
* * * *
38093304 CCACAAATGCCAAATAGACTGCA
1 CCACAAAGGCCAAATAGAATACG
* * *
38093327 CCACAAA-GCAAAACAGAATAGG
1 CCACAAAGGCCAAATAGAATACG
* * ***
38093349 CCACAAAGGCCAAATATAGTGTT
1 CCACAAAGGCCAAATAGAATACG
* **
38093372 CCAAAAAGGAAAAATAGAATACG
1 CCACAAAGGCCAAATAGAATACG
* * *
38093395 CCACAGAGGTCAAACA-AAGTACG
1 CCACAAAGGCCAAATAGAA-TACG
* * * *
38093418 CCACAAAGGCAAAAAAAAAATATG
1 CCACAAAGGC-CAAATAGAATACG
38093442 CCACAAAGGC
1 CCACAAAGGC
38093452 TCTATTTGGA
Statistics
Matches: 163, Mismatches: 50, Indels: 7
0.74 0.23 0.03
Matches are distributed among these distances:
22 18 0.11
23 126 0.77
24 17 0.10
25 2 0.01
ACGTcount: A:0.49, C:0.23, G:0.17, T:0.11
Consensus pattern (23 bp):
CCACAAAGGCCAAATAGAATACG
Found at i:38093307 original size:46 final size:46
Alignment explanation
Indices: 38093252--38093451 Score: 195
Period size: 46 Copynumber: 4.3 Consensus size: 46
38093242 GGCTAAACAA
*
38093252 AATACGCCACAAAGGCCAAATAGAGTACGCCACAAAGGCCAAATAG
1 AATACGCCACAAAGGCCAAATAGAGTACGCCACAAAGGCAAAATAG
* * * * * *
38093298 AATATGCCACAAATGCCAAATAGACTGCACCACAAA-GCAAAACAG
1 AATACGCCACAAAGGCCAAATAGAGTACGCCACAAAGGCAAAATAG
* * *** * *
38093343 AATAGGCCACAAAGGCCAAATATAGTGTTCCAAAAAGGAAAAATAG
1 AATACGCCACAAAGGCCAAATAGAGTACGCCACAAAGGCAAAATAG
* * * * * *
38093389 AATACGCCACAGAGGTCAAACAAAGTACGCCACAAAGGCAAAAAAAA
1 AATACGCCACAAAGGCCAAATAGAGTACGCCACAAAGGC-AAAATAG
*
38093436 AATATGCCACAAAGGC
1 AATACGCCACAAAGGC
38093452 TCTATTTGGA
Statistics
Matches: 121, Mismatches: 31, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
45 36 0.30
46 67 0.55
47 18 0.15
ACGTcount: A:0.49, C:0.23, G:0.17, T:0.10
Consensus pattern (46 bp):
AATACGCCACAAAGGCCAAATAGAGTACGCCACAAAGGCAAAATAG
Found at i:38093422 original size:91 final size:93
Alignment explanation
Indices: 38093212--38093451 Score: 218
Period size: 91 Copynumber: 2.6 Consensus size: 93
38093202 GTCGATTACA
** * * *
38093212 CCACAAAGGCCAAACAGAA-TATTCCATAATGGC-TAAACAAAATACGCCACAAAGGCCAAATAG
1 CCACAAAGGCCAAACA-AACTACACCACAAAGGCAAAAACAAAATACGCCACAAAGGCCAAATAG
* ** *
38093275 AGTACGCCACAAAGGCCAAATAGAATATG
65 AGTACGCCAAAAAGGAAAAATAGAATACG
* * * * * * *
38093304 CCACAAATGCCAAATAGACTGCACCACAAA-GC-AAAACAGAATAGGCCACAAAGGCCAAATATA
1 CCACAAAGGCCAAACAAACTACACCACAAAGGCAAAAACAAAATACGCCACAAAGGCCAAATAGA
***
38093367 GTGTTCCAAAAAGGAAAAATAGAATACG
66 GTACGCCAAAAAGGAAAAATAGAATACG
* * * * * *
38093395 CCACAGAGGTCAAACAAAGTACGCCACAAAGGCAAAAAAAAAATATGCCACAAAGGC
1 CCACAAAGGCCAAACAAACTACACCACAAAGGCAAAAACAAAATACGCCACAAAGGC
38093452 TCTATTTGGA
Statistics
Matches: 115, Mismatches: 30, Indels: 5
0.77 0.20 0.03
Matches are distributed among these distances:
91 73 0.63
92 22 0.19
93 20 0.17
ACGTcount: A:0.49, C:0.23, G:0.17, T:0.11
Consensus pattern (93 bp):
CCACAAAGGCCAAACAAACTACACCACAAAGGCAAAAACAAAATACGCCACAAAGGCCAAATAGA
GTACGCCAAAAAGGAAAAATAGAATACG
Found at i:38098604 original size:51 final size:50
Alignment explanation
Indices: 38098522--38098807 Score: 324
Period size: 51 Copynumber: 5.6 Consensus size: 50
38098512 GATGAACACG
* *
38098522 TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATAATGGTCACA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAAT-TTGGTCACA
* * * * **
38098573 TGTGTAGTACTAAGTGAAGGCTACAATGTGTACCGAGAGGCTTTGGTCACA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATA-AATTTGGTCACA
* * * * *
38098624 TGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGATCACA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAAT-TTGGTCACA
* * *
38098675 TGTGTAGTACTAAGTGAAGGCTACTATGTGTACCGA-AAAGCTTTGGTCACG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAA--TTTGGTCACA
* * * *
38098726 TGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAAACTTGATCACG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTACCGAT-AAATTTGGTCACA
38098776 TGTGTAGTACTATGTGAAGGCTACTACGTGTA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTA
38098808 TCGAATGATA
Statistics
Matches: 196, Mismatches: 33, Indels: 13
0.81 0.14 0.05
Matches are distributed among these distances:
50 43 0.22
51 148 0.76
52 5 0.03
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAATTTGGTCACA
Found at i:38098698 original size:102 final size:102
Alignment explanation
Indices: 38098522--38098799 Score: 425
Period size: 102 Copynumber: 2.7 Consensus size: 102
38098512 GATGAACACG
* *
38098522 TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATAATGGTCACATGTGTAGTACTAAG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATAATGATCACATGTGTAGTACTAAG
* *
38098587 TGAAGGCTACAATGTGTACCGAGAGGCTTTGGTCACA
66 TGAAGGCTACAATGTGTACCGAAAAGCTTTGGTCACA
* *
38098624 TGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGATCACATGTGTAGTACTAAG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATAATGATCACATGTGTAGTACTAAG
* *
38098689 TGAAGGCTACTATGTGTACCGAAAAGCTTTGGTCACG
66 TGAAGGCTACAATGTGTACCGAAAAGCTTTGGTCACA
* * * *
38098726 TGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAA-ACTTGATCACGTGTGTAGTACTAT
1 TGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATA-ATGATCACATGTGTAGTACTAA
38098789 GTGAAGGCTAC
65 GTGAAGGCTAC
38098800 TACGTGTATC
Statistics
Matches: 161, Mismatches: 14, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
101 34 0.21
102 127 0.79
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.29
Consensus pattern (102 bp):
TGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATAATGATCACATGTGTAGTACTAAG
TGAAGGCTACAATGTGTACCGAAAAGCTTTGGTCACA
Found at i:38102222 original size:50 final size:52
Alignment explanation
Indices: 38102097--38102227 Score: 151
Period size: 50 Copynumber: 2.6 Consensus size: 52
38102087 ATGACAAATG
* * * *
38102097 AGTTACTTAATGCA-AGACTTAATTTAATGATGCAGACTTAAACTATCATGGG
1 AGTTACATAATGCATA-ACTTTATTTAATGATGCAGACTTAAACTAGCATGGA
** * *
38102149 AGTTACATAATGCATGTCATTATTT-ATGATGCATACTT-AACTAGCATGGA
1 AGTTACATAATGCATAACTTTATTTAATGATGCAGACTTAAACTAGCATGGA
*
38102199 AGTTACATAATGCATAACTTTATTAAATG
1 AGTTACATAATGCATAACTTTATTTAATG
38102228 CAAAACACAC
Statistics
Matches: 65, Mismatches: 12, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
50 31 0.48
51 15 0.23
52 19 0.29
ACGTcount: A:0.37, C:0.13, G:0.15, T:0.35
Consensus pattern (52 bp):
AGTTACATAATGCATAACTTTATTTAATGATGCAGACTTAAACTAGCATGGA
Found at i:38103913 original size:9 final size:11
Alignment explanation
Indices: 38103880--38103909 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
38103870 AATGTCATGA
*
38103880 TATATATAATT
1 TATATATAAGT
38103891 TATATATAAGT
1 TATATATAAGT
38103902 TATATATA
1 TATATATA
38103910 TTATGTTAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (11 bp):
TATATATAAGT
Found at i:38105448 original size:57 final size:57
Alignment explanation
Indices: 38105360--38105474 Score: 221
Period size: 57 Copynumber: 2.0 Consensus size: 57
38105350 AATCTTGATG
*
38105360 TCCTTATAATTATGTAAGTATGTAAGGTATATTGGTAATGATCAAAGTGTTAATAGC
1 TCCTTATAATTATGTAAATATGTAAGGTATATTGGTAATGATCAAAGTGTTAATAGC
38105417 TCCTTATAATTATGTAAATATGTAAGGTATATTGGTAATGATCAAAGTGTTAATAGC
1 TCCTTATAATTATGTAAATATGTAAGGTATATTGGTAATGATCAAAGTGTTAATAGC
38105474 T
1 T
38105475 TGAAAGTTTT
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 57 1.00
ACGTcount: A:0.36, C:0.07, G:0.18, T:0.39
Consensus pattern (57 bp):
TCCTTATAATTATGTAAATATGTAAGGTATATTGGTAATGATCAAAGTGTTAATAGC
Found at i:38111435 original size:85 final size:85
Alignment explanation
Indices: 38111293--38111577 Score: 491
Period size: 85 Copynumber: 3.4 Consensus size: 85
38111283 ATCCGTTACT
* *
38111293 CGGTGGATTCAGCACTTAGCAACCACC-TTAAATTTAGTGATACGGGGAATCAGCACATAGCAAC
1 CGGTGGAATCAGCACTTAGCAACCACCTTTATATTTAGTGATACGGGGAATCAGCACATAGCAAC
*
38111357 CCCTTTCACAATCAAAGATA
66 CCCTTTCACAATCAAATATA
* * *
38111377 CGGTGGAATCAACACTTAGCAATCACCTTTATATTTAGTGATACGGGGAATCAGCACATATCAAC
1 CGGTGGAATCAGCACTTAGCAACCACCTTTATATTTAGTGATACGGGGAATCAGCACATAGCAAC
38111442 CCCTTTCACAATCAAATATA
66 CCCTTTCACAATCAAATATA
* *
38111462 CGGTGGAATCAGCACTTAGCAACCACCTTTATATTTAGTGATACGAGGATTCAGCACATAGCAAC
1 CGGTGGAATCAGCACTTAGCAACCACCTTTATATTTAGTGATACGGGGAATCAGCACATAGCAAC
38111527 CCCTTTCACAATCAAATATA
66 CCCTTTCACAATCAAATATA
38111547 CGGTGGAATCAGCACTTAGCAACCACCTTTA
1 CGGTGGAATCAGCACTTAGCAACCACCTTTA
38111578 GAATCAATAA
Statistics
Matches: 189, Mismatches: 11, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
84 24 0.13
85 165 0.87
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (85 bp):
CGGTGGAATCAGCACTTAGCAACCACCTTTATATTTAGTGATACGGGGAATCAGCACATAGCAAC
CCCTTTCACAATCAAATATA
Found at i:38111609 original size:85 final size:85
Alignment explanation
Indices: 38111293--38111615 Score: 445
Period size: 85 Copynumber: 3.8 Consensus size: 85
38111283 ATCCGTTACT
* *
38111293 CGGTGGATTCAGCACTTAGCAACCACC-TTA-AATTTAGTGATACGGGGAATCAGCACATAGCAA
1 CGGTGGAATCAGCACTTAGCAACCACCTTTATAA-TTAGTGATACAGGGAATCAGCACATAGCAA
*
38111356 CCCCTTTCACAATCAAAGATA
65 CCCCTTTCACAATCAAATATA
* * * * *
38111377 CGGTGGAATCAACACTTAGCAATCACCTTTATATTTAGTGATACGGGGAATCAGCACATATCAAC
1 CGGTGGAATCAGCACTTAGCAACCACCTTTATAATTAGTGATACAGGGAATCAGCACATAGCAAC
38111442 CCCTTTCACAATCAAATATA
66 CCCTTTCACAATCAAATATA
* *
38111462 CGGTGGAATCAGCACTTAGCAACCACCTTTATATTTAGTGATAC-GAGGATTCAGCACATAGCAA
1 CGGTGGAATCAGCACTTAGCAACCACCTTTATAATTAGTGATACAG-GGAATCAGCACATAGCAA
38111526 CCCCTTTCACAATCAAATATA
65 CCCCTTTCACAATCAAATATA
* * * * ** * *
38111547 CGGTGGAATCAGCACTTAGCAACCACCTTTAGAATCAATAATTTAGGGAATCAACACTTAGCAAC
1 CGGTGGAATCAGCACTTAGCAACCACCTTTATAATTAGTGATACAGGGAATCAGCACATAGCAAC
38111612 CCCT
66 CCCT
38111616 CGGGGAATCT
Statistics
Matches: 215, Mismatches: 20, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
84 25 0.12
85 188 0.87
86 2 0.01
ACGTcount: A:0.35, C:0.25, G:0.16, T:0.25
Consensus pattern (85 bp):
CGGTGGAATCAGCACTTAGCAACCACCTTTATAATTAGTGATACAGGGAATCAGCACATAGCAAC
CCCTTTCACAATCAAATATA
Found at i:38111621 original size:26 final size:26
Alignment explanation
Indices: 38111592--38111641 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
38111582 CAATAATTTA
38111592 GGGAATCAACACTTAGCAACCCCTCG
1 GGGAATCAACACTTAGCAACCCCTCG
** *
38111618 GGGAATCTGCACTTAGCGACCCCT
1 GGGAATCAACACTTAGCAACCCCT
38111642 TTTTATCCAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.26, C:0.34, G:0.22, T:0.18
Consensus pattern (26 bp):
GGGAATCAACACTTAGCAACCCCTCG
Found at i:38112010 original size:29 final size:30
Alignment explanation
Indices: 38111977--38112033 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
38111967 TCCTTAACTC
38111977 AAACTTTTGCA-AATTACAATTTTGCCCTT
1 AAACTTTTGCATAATTACAATTTTGCCCTT
* *
38112006 AAACTTTTGCATATTTACACTTTTGCCC
1 AAACTTTTGCATAATTACAATTTTGCCC
38112034 CAAAGCTCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 11 0.44
30 14 0.56
ACGTcount: A:0.28, C:0.23, G:0.07, T:0.42
Consensus pattern (30 bp):
AAACTTTTGCATAATTACAATTTTGCCCTT
Found at i:38132316 original size:104 final size:105
Alignment explanation
Indices: 38132136--38132403 Score: 450
Period size: 104 Copynumber: 2.6 Consensus size: 105
38132126 TAACCGTTAT
* **
38132136 TGGTGGATCTCGCACTTAGCACCACCGCTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
38132201 AATCAGCACATAGCAACCCCC-TTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
*
38132240 TGGTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
38132305 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
* **
38132345 TGGTGGATCA-CGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
38132404 TTATATACAA
Statistics
Matches: 154, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
104 82 0.53
105 71 0.46
106 1 0.01
ACGTcount: A:0.30, C:0.31, G:0.21, T:0.19
Consensus pattern (105 bp):
TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
Found at i:38132764 original size:29 final size:29
Alignment explanation
Indices: 38132731--38132794 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
38132721 TAATCCACCA
38132731 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
38132760 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
38132790 CCCAA
1 CCCAA
38132795 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:38132768 original size:30 final size:30
Alignment explanation
Indices: 38132738--38132794 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
38132728 CCACCCAACT
38132738 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
38132767 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
38132795 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:38134006 original size:37 final size:37
Alignment explanation
Indices: 38133956--38134030 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
38133946 CACTAATAAC
* *
38133956 TACCACTACTACCACCTCGACTCGAGTTTTAGCTTTT
1 TACCACCACTACCACCTCGACTCGAGTTTTAGATTTT
38133993 TACCACCACTACCACCTCGACTCGAGTTTTAGATTTT
1 TACCACCACTACCACCTCGACTCGAGTTTTAGATTTT
38134030 T
1 T
38134031 CTCTACCACC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.23, C:0.32, G:0.11, T:0.35
Consensus pattern (37 bp):
TACCACCACTACCACCTCGACTCGAGTTTTAGATTTT
Found at i:38134037 original size:32 final size:33
Alignment explanation
Indices: 38133963--38134040 Score: 95
Period size: 37 Copynumber: 2.3 Consensus size: 33
38133953 AACTACCACT
*
38133963 ACTACCACCTCGACTCGAGTTTTAGCTTTTTACCACC
1 ACTACCACCTCGACTCGAGTTTTAGATTTTT----CC
38134000 ACTACCACCTCGACTCGAGTTTTAGATTTTT-C
1 ACTACCACCTCGACTCGAGTTTTAGATTTTTCC
*
38134032 TCTACCACC
1 ACTACCACC
38134041 ACAGCCACTC
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
32 9 0.23
37 30 0.77
ACGTcount: A:0.22, C:0.35, G:0.10, T:0.33
Consensus pattern (33 bp):
ACTACCACCTCGACTCGAGTTTTAGATTTTTCC
Found at i:38134788 original size:21 final size:19
Alignment explanation
Indices: 38134763--38134809 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
38134753 TTGGATCCGA
*
38134763 TTTCAATTCAAGCTTTATTT
1 TTTCAATT-AAGCTTTAGTT
*
38134783 TCTTCAATTAATCTTTAGTT
1 T-TTCAATTAAGCTTTAGTT
38134803 TTTCAAT
1 TTTCAAT
38134810 CATTTGTCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 6 0.25
20 11 0.46
21 7 0.29
ACGTcount: A:0.26, C:0.15, G:0.04, T:0.55
Consensus pattern (19 bp):
TTTCAATTAAGCTTTAGTT
Found at i:38137701 original size:47 final size:47
Alignment explanation
Indices: 38137647--38137810 Score: 229
Period size: 47 Copynumber: 3.5 Consensus size: 47
38137637 GTTTTATGGA
*
38137647 TGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
*
38137694 TGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
* * * * * * *
38137741 TGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATG
1 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
* *
38137788 TGAAAGCGTATAAATGTGATAAG
1 TGAAAGTGTATATATGTGATAAG
38137811 TCCCGAAGGG
Statistics
Matches: 103, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 103 1.00
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.27
Consensus pattern (47 bp):
TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
Found at i:38140727 original size:18 final size:18
Alignment explanation
Indices: 38140690--38140727 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
38140680 AATCTCTTGA
*
38140690 ATTTTATTTCTTTATGTT
1 ATTTTATTTCTTTATATT
38140708 ATTTTATTT-TTTATTATT
1 ATTTTATTTCTTTA-TATT
38140726 AT
1 AT
38140728 AAAAACTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.21, C:0.03, G:0.03, T:0.74
Consensus pattern (18 bp):
ATTTTATTTCTTTATATT
Found at i:38141783 original size:94 final size:94
Alignment explanation
Indices: 38141622--38141809 Score: 279
Period size: 94 Copynumber: 2.0 Consensus size: 94
38141612 TAGTTCAGAT
38141622 ACAAAATTTCTATTATGGGTTAGACAATCAAAATAGACGAAAATTCGACATTATGACTAGGGAAG
1 ACAAAATTTCTATTATGGGTTAGACAATCAAAATAGACGAAAATTCGACATTATGACTAGGGAAG
** *
38141687 TATTTGGACTAAAACCTAGGAGAAAGTTA
66 TATTTGGAAGAAAACCCAGGAGAAAGTTA
* * * * *
38141716 ACAAATTTTCTTTTATGGGTTGGACAATCAAAATAGATG-GAATTCGACATTATGACTAAGGGAA
1 ACAAAATTTCTATTATGGGTTAGACAATCAAAATAGACGAAAATTCGACATTATGACT-AGGGAA
*
38141780 GTATTTGGAAGAAAACCCAGGAGGAAGTTA
65 GTATTTGGAAGAAAACCCAGGAGAAAGTTA
38141810 TGGAAATATT
Statistics
Matches: 84, Mismatches: 9, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
93 17 0.20
94 67 0.80
ACGTcount: A:0.40, C:0.11, G:0.21, T:0.27
Consensus pattern (94 bp):
ACAAAATTTCTATTATGGGTTAGACAATCAAAATAGACGAAAATTCGACATTATGACTAGGGAAG
TATTTGGAAGAAAACCCAGGAGAAAGTTA
Found at i:38145019 original size:21 final size:21
Alignment explanation
Indices: 38144979--38145019 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
38144969 ACCTGCTCTC
* **
38144979 GATGTCGCGACATCGCTGAGG
1 GATGACGCGACATCAATGAGG
38145000 GATGACGCGACATCAATGAG
1 GATGACGCGACATCAATGAG
38145020 TAACTCTGTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.27, C:0.22, G:0.34, T:0.17
Consensus pattern (21 bp):
GATGACGCGACATCAATGAGG
Found at i:38146643 original size:50 final size:50
Alignment explanation
Indices: 38146475--38146716 Score: 177
Period size: 50 Copynumber: 4.7 Consensus size: 50
38146465 GGTGATGAGA
* * **
38146475 TCCCATGTAAGACCATGT-TTGGAACATGGCATTGGCATCATTGAGATTATGAGAGG
1 TCCCATGTAAGACCATGTCTAGG-ACATGGCATTGGCA-C----CGA-TATGAGAAC
* * * * * **
38146531 TCCCATGTAAGAACGTGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTAGGACATGGCATTGGCACCGATATGAGAAC
** * *
38146581 TCCCCCGTAAGACCATGTCTAGGACAAGGCATGGGCACCGATATGAGAAC
1 TCCCATGTAAGACCATGTCTAGGACATGGCATTGGCACCGATATGAGAAC
* * ** **
38146631 TCCCATGTAAGACCATATCTGGGATGTGGCATTGGCA--G-TACAAGAAAC
1 TCCCATGTAAGACCATGTCTAGGACATGGCATTGGCACCGATATGAG-AAC
*
38146679 ATCCCATGTAAGACCATGTCTAGGACATGGCTTTGGCA
1 -TCCCATGTAAGACCATGTCTAGGACATGGCATTGGCA
38146717 TGTTATTATC
Statistics
Matches: 151, Mismatches: 32, Indels: 13
0.77 0.16 0.07
Matches are distributed among these distances:
47 4 0.03
48 4 0.03
49 32 0.21
50 76 0.50
51 2 0.01
55 1 0.01
56 29 0.19
57 3 0.02
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTAGGACATGGCATTGGCACCGATATGAGAAC
Found at i:38150851 original size:50 final size:50
Alignment explanation
Indices: 38150776--38150944 Score: 257
Period size: 50 Copynumber: 3.4 Consensus size: 50
38150766 TACACGGAAT
* * *
38150776 CACTTATCATTTATCTCTTGTCACTGATCAGATAAGTGTTGCTAAGCTAC
1 CACTTATCACTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAGCTAC
* *
38150826 CACTTATCACTTATCACTTGTCACTGATCAGATAAGTGTAGCTAGGTTAC
1 CACTTATCACTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAGCTAC
* *
38150876 CACTTAATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCGAAGCTAC
1 CACTT-ATCACTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAGCTAC
*
38150927 CACTTATCACTTGTCACT
1 CACTTATCACTTATCACT
38150945 GATCAGAAGT
Statistics
Matches: 109, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
50 63 0.58
51 46 0.42
ACGTcount: A:0.27, C:0.24, G:0.15, T:0.34
Consensus pattern (50 bp):
CACTTATCACTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAGCTAC
Found at i:38150880 original size:43 final size:43
Alignment explanation
Indices: 38150833--38150951 Score: 139
Period size: 51 Copynumber: 2.6 Consensus size: 43
38150823 TACCACTTAT
* * *
38150833 CACTTATCACTTGTCACTGATCAGATAAGTGTAGCTAGGTTAC
1 CACTTATCACTTGTCACTGATCAGATAAGTGTAGCGAAGCTAC
38150876 CACTTAATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCGAAGCTAC
1 CAC-T--T-A----TCACTTGTCACTGATCAGATAAGTGTAGCGAAGCTAC
38150927 CACTTATCACTTGTCACTGATCAGA
1 CACTTATCACTTGTCACTGATCAGA
38150952 AGTACTCAAC
Statistics
Matches: 65, Mismatches: 3, Indels: 16
0.77 0.04 0.19
Matches are distributed among these distances:
43 22 0.34
44 1 0.02
46 1 0.02
47 2 0.03
48 1 0.02
50 1 0.02
51 37 0.57
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.31
Consensus pattern (43 bp):
CACTTATCACTTGTCACTGATCAGATAAGTGTAGCGAAGCTAC
Found at i:38152312 original size:14 final size:14
Alignment explanation
Indices: 38152293--38152326 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
38152283 CCCCTTTTAG
*
38152293 GAAATTTCGTCCCT
1 GAAATTTCGTACCT
38152307 GAAATTTCGTACCT
1 GAAATTTCGTACCT
38152321 GTAAAT
1 G-AAAT
38152327 AAATTCGGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 14 0.78
15 4 0.22
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.35
Consensus pattern (14 bp):
GAAATTTCGTACCT
Found at i:38163398 original size:50 final size:50
Alignment explanation
Indices: 38163318--38163530 Score: 318
Period size: 50 Copynumber: 4.2 Consensus size: 50
38163308 TACACGGAAT
* * * * *
38163318 CACTTGTCACTTATCTCTTATCGCTAATCAGATAAGTGTAGCTAAGCTAC
1 CACTTATCACTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAGCTAC
*
38163368 CACTTATCACTTATCACTTGTCACTGATCAGATAAGTGTAGCTAGGCTAC
1 CACTTATCACTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAGCTAC
*
38163418 CACTTAATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAGCTAC
1 CACTT-ATCACTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAGCTAC
* * * *
38163469 GACTTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAACGAAGCTAC
1 CACTTATCACTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAGCTAC
38163519 CACTTATCACTT
1 CACTTATCACTT
38163531 GTCATTGATC
Statistics
Matches: 150, Mismatches: 12, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
50 103 0.69
51 47 0.31
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (50 bp):
CACTTATCACTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAGCTAC
Found at i:38163468 original size:101 final size:100
Alignment explanation
Indices: 38163344--38163534 Score: 328
Period size: 101 Copynumber: 1.9 Consensus size: 100
38163334 CTTATCGCTA
*
38163344 ATCAGATAAGTGTAGCTAAGCTACCACTTATCACTTATCACTTGTCACTGATCAGATAAGTGTAG
1 ATCAGATAAGTGTAGCTAAGCTACCACTTATCACTTATCACTTGTCACTGATCAGATAAGTGTAA
* *
38163409 CTAGGCTACCACTTAATCACTTGTCACTTGTCACTG
66 CGAAGCTACCACTT-ATCACTTGTCACTTGTCACTG
* *
38163445 ATCAGATAAGTGTAGCTAAGCTACGACTTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAA
1 ATCAGATAAGTGTAGCTAAGCTACCACTTATCACTTATCACTTGTCACTGATCAGATAAGTGTAA
38163510 CGAAGCTACCACTTATCACTTGTCA
66 CGAAGCTACCACTTATCACTTGTCA
38163535 TTGATCAGAA
Statistics
Matches: 85, Mismatches: 5, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
100 11 0.13
101 74 0.87
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (100 bp):
ATCAGATAAGTGTAGCTAAGCTACCACTTATCACTTATCACTTGTCACTGATCAGATAAGTGTAA
CGAAGCTACCACTTATCACTTGTCACTTGTCACTG
Found at i:38163531 original size:50 final size:50
Alignment explanation
Indices: 38163344--38163534 Score: 328
Period size: 50 Copynumber: 3.8 Consensus size: 50
38163334 CTTATCGCTA
*
38163344 ATCAGATAAGTGTAGCTAAGCTACCACTTATCACTTATCACTTGTCACTG
1 ATCAGATAAGTGTAGCTAAGCTACCACTTATCACTTGTCACTTGTCACTG
*
38163394 ATCAGATAAGTGTAGCTAGGCTACCACTTAATCACTTGTCACTTGTCACTG
1 ATCAGATAAGTGTAGCTAAGCTACCACTT-ATCACTTGTCACTTGTCACTG
*
38163445 ATCAGATAAGTGTAGCTAAGCTACGACTTATCACTTGTCACTTGTCACTG
1 ATCAGATAAGTGTAGCTAAGCTACCACTTATCACTTGTCACTTGTCACTG
* *
38163495 ATCAGATAAGTGTAACGAAGCTACCACTTATCACTTGTCA
1 ATCAGATAAGTGTAGCTAAGCTACCACTTATCACTTGTCA
38163535 TTGATCAGAA
Statistics
Matches: 133, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
50 86 0.65
51 47 0.35
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (50 bp):
ATCAGATAAGTGTAGCTAAGCTACCACTTATCACTTGTCACTTGTCACTG
Found at i:38164924 original size:13 final size:14
Alignment explanation
Indices: 38164908--38164936 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
38164898 TTTTCCTTGA
38164908 TTTTTTTTTGT-TT
1 TTTTTTTTTGTCTT
38164921 TTTTTTTTTGTCTT
1 TTTTTTTTTGTCTT
38164935 TT
1 TT
38164937 GTGTGCTTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.00, C:0.03, G:0.07, T:0.90
Consensus pattern (14 bp):
TTTTTTTTTGTCTT
Found at i:38170912 original size:9 final size:9
Alignment explanation
Indices: 38170898--38170937 Score: 53
Period size: 9 Copynumber: 4.3 Consensus size: 9
38170888 CTCCTCTCTG
38170898 TTCTTTTTT
1 TTCTTTTTT
38170907 TTCTTTTTT
1 TTCTTTTTT
*
38170916 CTCTTTTTT
1 TTCTTTTTT
*
38170925 TTGTTTTCTT
1 TTCTTTT-TT
38170935 TTC
1 TTC
38170938 GTTGCTGGTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
9 22 0.85
10 4 0.15
ACGTcount: A:0.00, C:0.15, G:0.03, T:0.82
Consensus pattern (9 bp):
TTCTTTTTT
Found at i:38170918 original size:23 final size:23
Alignment explanation
Indices: 38170892--38170936 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
38170882 TCCCTTCTCC
38170892 TCTCTGTTCTTTT-TTTTCTTTTT
1 TCTCT-TTCTTTTGTTTTCTTTTT
*
38170915 TCTCTTTTTTTTGTTTTCTTTT
1 TCTCTTTCTTTTGTTTTCTTTT
38170937 CGTTGCTGGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.00, C:0.16, G:0.04, T:0.80
Consensus pattern (23 bp):
TCTCTTTCTTTTGTTTTCTTTTT
Found at i:38171267 original size:14 final size:14
Alignment explanation
Indices: 38171243--38171277 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
38171233 TGGTTTGGTT
38171243 TATTTTT-TTTATA
1 TATTTTTGTTTATA
*
38171256 TATTTTTGTTTATT
1 TATTTTTGTTTATA
38171270 TATTTTTG
1 TATTTTTG
38171278 ATTTGGGCCG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 7 0.35
14 13 0.65
ACGTcount: A:0.17, C:0.00, G:0.06, T:0.77
Consensus pattern (14 bp):
TATTTTTGTTTATA
Found at i:38171693 original size:50 final size:50
Alignment explanation
Indices: 38171539--38171695 Score: 124
Period size: 50 Copynumber: 3.1 Consensus size: 50
38171529 TCGGGGAAGC
* * *
38171539 AAGATTCGTCGTTGTGGCTTCAATCTGTTCCACTGCACC-GTCTGGAAAGT
1 AAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTG-ACCAATCTGGAAAGT
* * * * ** * * *
38171589 AAGACTCACCGTTGTGGCTTTAGTCTTTTTAACTG--CAATGTAGGGGAAGA
1 AAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGACCAATCT--GGAAAGT
* *
38171639 AAGATTCGCCGTTGTGGATTTAATCTGTTCCACTGTACCACT-TGGAAAGT
1 AAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTG-ACCAATCTGGAAAGT
38171689 AAGATTC
1 AAGATTC
38171696 AACCTACTCC
Statistics
Matches: 79, Mismatches: 22, Indels: 12
0.70 0.19 0.11
Matches are distributed among these distances:
47 1 0.01
48 2 0.03
50 72 0.91
52 1 0.01
53 3 0.04
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (50 bp):
AAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGACCAATCTGGAAAGT
Found at i:38171948 original size:131 final size:131
Alignment explanation
Indices: 38171782--38172078 Score: 470
Period size: 131 Copynumber: 2.3 Consensus size: 131
38171772 ATCTATAATT
* *
38171782 TTTCCAACCTACTCCACTACTG-CTCAGGGAAATAGGACTTGTGGCTTAAATCTGCTTCCCTACT
1 TTTCCAACCTACTCCACTGCTGAC-CAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCCTACT
* * * *
38171846 CCTAGGGAAGATAAGATTCACCATCTTCGATCTGCTCTACTATTGCTTAGGAAGATGAGATCTGT
65 CCTAGGGAAGACAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGAAGATGAGATCAGT
38171911 AA
130 AA
38171913 TTTCCAACCTACTCCACTGCTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCCTACTC
1 TTTCCAACCTACTCCACTGCTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCCTACTC
* * * * *
38171978 TTGGGGAAGACAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATGAGATCAGTA
66 CTAGGGAAGACAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGAAGATGAGATCAGTA
38172043 A
131 A
*
38172044 TTTCCAACCTATTCCACTGCTGACCAGGGAGATAG
1 TTTCCAACCTACTCCACTGCTGACCAGGGAGATAG
38172079 AATTACTGGC
Statistics
Matches: 153, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
131 152 0.99
132 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.29
Consensus pattern (131 bp):
TTTCCAACCTACTCCACTGCTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCCTACTC
CTAGGGAAGACAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGAAGATGAGATCAGTA
A
Found at i:38172089 original size:131 final size:132
Alignment explanation
Indices: 38171861--38172660 Score: 862
Period size: 132 Copynumber: 6.1 Consensus size: 132
38171851 GGAAGATAAG
* * * * * * *
38171861 ATTCACCATCTTCGATCTGCTCTACTATTGCTTAGGAAGATGAGATCTGTAAT-TTCCAACCTAC
1 ATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCAGTAATCTT-CAACCTAT
* * * * *** *
38171925 TCCACTGCTGACCAGGGAGATAGGACTT-GTGGCTTAAATCTGCTTCC-C-T-ACTCTTGGGGAA
65 TCCACTGCTGACCAGGGAGATA-GAATTACTGGCTTAAATGTAC-TCCACGTAACTCACAGGGAG
38171986 G-ACAA
128 GTA-AA
* *
38171991 GATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATGAGATCAGTAAT-TTCCAACCTA
1 -ATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCAGTAATCTT-CAACCTA
* *
38172055 TTCCACTGCTGACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACT-TCAGGGAG
64 TTCCACTGCTGACCAGGGAGATAGAATTACTGGCTTAAATGTACTCCAC-GTAACTCACAGGGAG
38172119 GTAAA
128 GTAAA
* * *
38172124 A-TCTGCCATCTTTGATCTACTCCACTACTGCTTAGGGAGATAAGATCTA-TAATCTTCAATCTA
1 ATTC-GCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATC-AGTAATCTTCAACCTA
* * *
38172187 TTCCACTGCTG-CCTAGGAAGATAGAA-TATTGGCTTTAATGTACTCCACTGTAAC-CACAGGGA
64 TTCCACTGCTGACC-AGGGAGATAGAATTACTGGCTTAAATGTACTCCAC-GTAACTCACAGGGA
38172249 GGTAAA
127 GGTAAA
* * *
38172255 A-CCTGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTA-TAATCTTCAATCTA
1 ATTC-GCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATC-AGTAATCTTCAACCTA
** *
38172318 TTCCACTGCCAACCAGGGAGATAGAATTACTGGCTTTAATGTACTCCACTGTAAC-CACAGGGAG
64 TTCCACTGCTGACCAGGGAGATAGAATTACTGGCTTAAATGTACTCCAC-GTAACTCACAGGGAG
38172382 GTAAA
128 GTAAA
* * *
38172387 ATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATT
1 ATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCAGTAATCTTCAACCTATT
* ** * * * *
38172452 CCACTACCAACTAGGGAGATAGAATTACTAGCTTCAATGTACTCCACTGTAAC-CACAGGTAGGT
66 CCACTGCTGACCAGGGAGATAGAATTACTGGCTTAAATGTACTCCAC-GTAACTCACAGGGAGGT
38172516 AAA
130 AAA
* * * * * *
38172519 ATCCGTCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTTAATCTATT
1 ATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCAGTAATCTTCAACCTATT
** * * *
38172584 CCACTGCCAACCAGAGAGATAGAATTACTAGCTTCAATGTACTCCACTGTAAC-CACAGGGAGGT
66 CCACTGCTGACCAGGGAGATAGAATTACTGGCTTAAATGTACTCCAC-GTAACTCACAGGGAGGT
38172648 AAA
130 AAA
38172651 ATTCGCCATC
1 ATTCGCCATC
38172661 AACCTGTTCC
Statistics
Matches: 608, Mismatches: 46, Indels: 29
0.89 0.07 0.04
Matches are distributed among these distances:
130 7 0.01
131 214 0.35
132 369 0.61
133 14 0.02
134 4 0.01
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.29
Consensus pattern (132 bp):
ATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCAGTAATCTTCAACCTATT
CCACTGCTGACCAGGGAGATAGAATTACTGGCTTAAATGTACTCCACGTAACTCACAGGGAGGTA
AA
Found at i:38172161 original size:44 final size:44
Alignment explanation
Indices: 38172113--38172588 Score: 134
Period size: 44 Copynumber: 10.8 Consensus size: 44
38172103 CTGTAACTTC
* *
38172113 AGGGAGGTAAAATCTGCCATCTTTGATCTACTCCACTACTGCTT
1 AGGGAGATAAAATCTGCCATCTTTAATCTACTCCACTACTGCTT
* *** * * * *
38172157 AGGGAGATAAGATCTATAATCTTCAATCTATTCCACTGCTGCCT
1 AGGGAGATAAAATCTGCCATCTTTAATCTACTCCACTACTGCTT
* * * **
38172201 AGGAAGATAGAATAT-TG---GCTTTAATGTACTCCACTGTAAC--CAC
1 AGGGAGATA-AA-ATCTGCCATCTTTAATCTACTCCAC--T-ACTGCTT
* * * *
38172244 AGGGAGGTAAAACCTGCCATCTTTGATCTGCTCCACTACTGCTT
1 AGGGAGATAAAATCTGCCATCTTTAATCTACTCCACTACTGCTT
* *** * * * ** *
38172288 AGGGAGATAAGATCTATAATCTTCAATCTATTCCACTGCCAAC-C
1 AGGGAGATAAAATCTGCCATCTTTAATCTACTCCACT-ACTGCTT
* * *** * **
38172332 AGGGAGATAGAAT-TACTGGCTTTAATGTACTCCACTGTAAC--CAC
1 AGGGAGATAAAATCTGCCATCTTTAATCTACTCCAC--T-ACTGCTT
* * ** *
38172376 AGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTT
1 AGGGAGATAAAATCTGCCATCTTTAATCTACTCCACTACTGCTT
* ** * * **
38172420 AGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTACCAAC-T
1 AGGGAGATAAAATCTGCCATCTTTAATCTACTCCACTA-CTGCTT
* * * * * * **
38172464 AGGGAGATAGAAT-TACTAGCTTCAATGTACTCCACTGTAAC--CAC
1 AGGGAGATAAAATCTGCCATCTTTAATCTACTCCAC--T-ACTGCTT
* * * * * *
38172508 AGGTAGGTAAAATCCGTCATCTTTGATCTGCTCCACTACTGCTT
1 AGGGAGATAAAATCTGCCATCTTTAATCTACTCCACTACTGCTT
* ** *
38172552 AGGGAGATAAGATCTGTAATCTTTAATCTATTCCACT
1 AGGGAGATAAAATCTGCCATCTTTAATCTACTCCACT
38172589 GCCAACCAGA
Statistics
Matches: 298, Mismatches: 108, Indels: 52
0.65 0.24 0.11
Matches are distributed among these distances:
41 1 0.00
42 23 0.08
43 44 0.15
44 177 0.59
45 50 0.17
46 3 0.01
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (44 bp):
AGGGAGATAAAATCTGCCATCTTTAATCTACTCCACTACTGCTT
Found at i:38172188 original size:132 final size:132
Alignment explanation
Indices: 38172000--38172660 Score: 999
Period size: 132 Copynumber: 5.0 Consensus size: 132
38171990 AGATTCGCCG
* * *
38172000 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATGAGATC-AGTAAT-TTCCAACCTATTCCACTG
1 TCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTA-TAATCTT-CAATCTATTCCACTG
** **
38172063 CTGACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACTTCAGGGAGGTAAAATCT
64 CCAACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCT
38172128 GCCA
129 GCCA
*
38172132 TCTTTGATCTACTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAATCTATTCCACTG-C
1 TCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAATCTATTCCACTGCC
** * * * *
38172196 TGCCTAGGAAGATAGAA-TATTGGCTTTAATGTACTCCACTGTAACCACAGGGAGGTAAAACCTG
66 AACC-AGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTG
38172260 CCA
130 CCA
38172263 TCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAATCTATTCCACTGCC
1 TCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAATCTATTCCACTGCC
* *
38172328 AACCAGGGAGATAGAATTACTGGCTTTAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGC
66 AACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGC
38172393 CA
131 CA
* * *
38172395 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTACC
1 TCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAATCTATTCCACTGCC
* * * * *
38172460 AACTAGGGAGATAGAATTACTAGCTTCAATGTACTCCACTGTAACCACAGGTAGGTAAAATCCGT
66 AACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGC
38172525 CA
131 CA
* *
38172527 TCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTTAATCTATTCCACTGCC
1 TCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAATCTATTCCACTGCC
* *
38172592 AACCAGAGAGATAGAATTACTAGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAAT-TCG
66 AACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCT-G
38172656 CCA
130 CCA
38172659 TC
1 TC
38172661 AACCTGTTCC
Statistics
Matches: 487, Mismatches: 36, Indels: 12
0.91 0.07 0.02
Matches are distributed among these distances:
131 120 0.25
132 364 0.75
133 3 0.01
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (132 bp):
TCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAATCTATTCCACTGCC
AACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGC
CA
Found at i:38172345 original size:263 final size:264
Alignment explanation
Indices: 38171995--38172660 Score: 1018
Period size: 263 Copynumber: 2.5 Consensus size: 264
38171985 AGACAAGATT
* * * *
38171995 CGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATGAGATC-AGTAAT-TTCCAACCTATTC
1 CGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTA-TAATCTT-CAATCTATTC
** **
38172058 CACTGCTGACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACTTCAGGGAGGTAA
64 CACTGCCAACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAA
*
38172123 AATCTGCCATCTTTGATCTACTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAATCTAT
129 AATCTGCCATCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAATCTAT
* *** * * *
38172188 TCCACTGCTGCCTAGGAAGATAGAA-TATTGGCTTTAATGTACTCCACTGTAACCACAGGGAGGT
194 TCCACTACCAACTAGGAAGATAGAATTACTAGCTTCAATGTACTCCACTGTAACCACAGGGAGGT
38172252 AAAA-C
259 AAAATC
38172257 CTGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAATCTATTCC
1 C-GCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAATCTATTCC
*
38172322 ACTGCCAACCAGGGAGATAGAATTACTGGCTTTAATGTACTCCACTGTAACCACAGGGAGGTAAA
65 ACTGCCAACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAA
* * *
38172387 ATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATT
130 ATCTGCCATCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAATCTATT
* *
38172452 CCACTACCAACTAGGGAGATAGAATTACTAGCTTCAATGTACTCCACTGTAACCACAGGTAGGTA
195 CCACTACCAACTAGGAAGATAGAATTACTAGCTTCAATGTACTCCACTGTAACCACAGGGAGGTA
38172517 AAATC
260 AAATC
* * *
38172522 CGTCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTTAATCTATTCCA
1 CGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAATCTATTCCA
* *
38172587 CTGCCAACCAGAGAGATAGAATTACTAGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAA
66 CTGCCAACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAA
38172652 T-TCGCCATC
131 TCT-GCCATC
38172661 AACCTGTTCC
Statistics
Matches: 369, Mismatches: 29, Indels: 10
0.90 0.07 0.02
Matches are distributed among these distances:
262 1 0.00
263 194 0.53
264 172 0.47
265 2 0.01
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (264 bp):
CGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAATCTATTCCA
CTGCCAACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAA
TCTGCCATCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAATCTATTC
CACTACCAACTAGGAAGATAGAATTACTAGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAA
AATC
Found at i:38174984 original size:16 final size:16
Alignment explanation
Indices: 38174963--38174995 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
38174953 CGCATTGGTC
*
38174963 TCTCCTTTTTTCTTTT
1 TCTCCTTTTTTATTTT
38174979 TCTCCTTTTTTATTTT
1 TCTCCTTTTTTATTTT
38174995 T
1 T
38174996 ATTTTTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.03, C:0.21, G:0.00, T:0.76
Consensus pattern (16 bp):
TCTCCTTTTTTATTTT
Found at i:38174994 original size:6 final size:6
Alignment explanation
Indices: 38174985--38175089 Score: 59
Period size: 6 Copynumber: 16.8 Consensus size: 6
38174975 TTTTTCTCCT
* * * * * *
38174985 TTTTTA TTTTTA TTTTTA TTTTAA TTTTTCC TTTTTGC TTTTGA CTTTGA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTT-A TTTTT-A TTTTTA TTTTTA
* * * * *
38175035 TTTTTC TTTTT- TTTCTTCT TTTTTGT TTTTTA TTTTTA TTTTGA TTTTGA
1 TTTTTA TTTTTA TTT-TT-A TTTTT-A TTTTTA TTTTTA TTTTTA TTTTTA
38175085 TTTTT
1 TTTTT
38175090 TATTGAATCT
Statistics
Matches: 81, Mismatches: 14, Indels: 8
0.79 0.14 0.08
Matches are distributed among these distances:
5 3 0.04
6 57 0.70
7 18 0.22
8 3 0.04
ACGTcount: A:0.10, C:0.07, G:0.06, T:0.77
Consensus pattern (6 bp):
TTTTTA
Found at i:38175020 original size:26 final size:26
Alignment explanation
Indices: 38174991--38175047 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
38174981 TCCTTTTTTA
* *
38174991 TTTTTATTTTTATTTTAATTTTTCCT
1 TTTTTATTTTGACTTTAATTTTTCCT
** * *
38175017 TTTTGCTTTTGACTTTGATTTTTCTT
1 TTTTTATTTTGACTTTAATTTTTCCT
38175043 TTTTT
1 TTTTT
38175048 TCTTCTTTTT
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.11, C:0.09, G:0.05, T:0.75
Consensus pattern (26 bp):
TTTTTATTTTGACTTTAATTTTTCCT
Found at i:38175912 original size:25 final size:25
Alignment explanation
Indices: 38175859--38175924 Score: 71
Period size: 25 Copynumber: 2.6 Consensus size: 25
38175849 AAGAAAGTCT
* *
38175859 AAAAGAATGAAAGAATAATTATTCC
1 AAAAGAATGAAAGAATAATTACTCA
*
38175884 AAAAGAATGAAAGAAT-ATTGGCTCA
1 AAAAGAATGAAAGAATAATT-ACTCA
38175909 AAAATGAATGCAAAGA
1 AAAA-GAATG-AAAGA
38175925 TGTATTTTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
24 3 0.09
25 22 0.63
26 5 0.14
27 5 0.14
ACGTcount: A:0.56, C:0.08, G:0.17, T:0.20
Consensus pattern (25 bp):
AAAAGAATGAAAGAATAATTACTCA
Found at i:38185958 original size:16 final size:16
Alignment explanation
Indices: 38185937--38185992 Score: 60
Period size: 16 Copynumber: 3.4 Consensus size: 16
38185927 AATCGGATGT
38185937 GGAATTAATTAACTAA
1 GGAATTAATTAACTAA
* **
38185953 GGAATTAAGGTTTA-TGT
1 GGAATTAA--TTAACTAA
38185970 GGAATTAATTAACTAA
1 GGAATTAATTAACTAA
38185986 GGAATTA
1 GGAATTA
38185993 GGGTTTACTT
Statistics
Matches: 31, Mismatches: 6, Indels: 6
0.72 0.14 0.14
Matches are distributed among these distances:
15 3 0.10
16 16 0.52
17 9 0.29
18 3 0.10
ACGTcount: A:0.43, C:0.04, G:0.20, T:0.34
Consensus pattern (16 bp):
GGAATTAATTAACTAA
Found at i:38185975 original size:33 final size:33
Alignment explanation
Indices: 38185933--38185999 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
38185923 TAACAATCGG
38185933 ATGTGGAATTAATTAACTAAGGAATTAAGGTTT
1 ATGTGGAATTAATTAACTAAGGAATTAAGGTTT
*
38185966 ATGTGGAATTAATTAACTAAGGAATTAGGGTTT
1 ATGTGGAATTAATTAACTAAGGAATTAAGGTTT
38185999 A
1 A
38186000 CTTTAGAAGT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.39, C:0.03, G:0.22, T:0.36
Consensus pattern (33 bp):
ATGTGGAATTAATTAACTAAGGAATTAAGGTTT
Found at i:38188034 original size:25 final size:23
Alignment explanation
Indices: 38187986--38188035 Score: 57
Period size: 25 Copynumber: 2.1 Consensus size: 23
38187976 ATATTTGTAT
*
38187986 ATAATTTTATAAACATATATTAA
1 ATAATTTTATAAACATATAATAA
38188009 ATAATTTTTAATAAA-ATATTAATAA
1 ATAA-TTTT-ATAAACATA-TAATAA
38188034 AT
1 AT
38188036 TTGAAATAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
23 4 0.17
24 7 0.30
25 12 0.52
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (23 bp):
ATAATTTTATAAACATATAATAA
Found at i:38197681 original size:6 final size:6
Alignment explanation
Indices: 38197670--38197710 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
38197660 CAATACACTA
*
38197670 ATACAT ATACAT ATACATAT ATATAT ATACAT ATACAT ATA
1 ATACAT ATACAT ATAC--AT ATACAT ATACAT ATACAT ATA
38197711 TGTGATTGCT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 26 0.84
8 5 0.16
ACGTcount: A:0.51, C:0.12, G:0.00, T:0.37
Consensus pattern (6 bp):
ATACAT
Found at i:38197697 original size:20 final size:20
Alignment explanation
Indices: 38197674--38197711 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
38197664 ACACTAATAC
38197674 ATATACATATACATATATAT
1 ATATACATATACATATATAT
38197694 ATATACATATACATATAT
1 ATATACATATACATATAT
38197712 GTGATTGCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.11, G:0.00, T:0.39
Consensus pattern (20 bp):
ATATACATATACATATATAT
Found at i:38203144 original size:10 final size:10
Alignment explanation
Indices: 38203126--38203198 Score: 50
Period size: 10 Copynumber: 7.9 Consensus size: 10
38203116 ATATAAGAAT
*
38203126 AATTATATTG
1 AATTATATTA
*
38203136 AATTTTATTA
1 AATTATATTA
38203146 AATTATA-T-
1 AATTATATTA
* *
38203154 ATTTTTATTA
1 AATTATATTA
*
38203164 AATTATATTT
1 AATTATATTA
38203174 AA-TA-A-T-
1 AATTATATTA
*
38203180 AATTATTTTA
1 AATTATATTA
38203190 AATTATATT
1 AATTATATT
38203199 TTATAGTATT
Statistics
Matches: 47, Mismatches: 10, Indels: 12
0.68 0.14 0.17
Matches are distributed among these distances:
6 2 0.04
7 3 0.06
8 6 0.13
9 5 0.11
10 31 0.66
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.56
Consensus pattern (10 bp):
AATTATATTA
Found at i:38203172 original size:28 final size:27
Alignment explanation
Indices: 38203123--38203198 Score: 84
Period size: 28 Copynumber: 2.9 Consensus size: 27
38203113 TTCATATAAG
* *
38203123 AATAATTA-TATTGAATTTTATTAAAT
1 AATAATTATTATTAAATTATATTAAAT
* * *
38203149 TATATATTTTTATTAAATTATATTTAAT
1 AATA-ATTATTATTAAATTATATTAAAT
38203177 AATAATTATT-TTAAATTATATT
1 AATAATTATTATTAAATTATATT
38203199 TTATAGTATT
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
26 15 0.37
27 8 0.20
28 18 0.44
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.55
Consensus pattern (27 bp):
AATAATTATTATTAAATTATATTAAAT
Found at i:38203246 original size:59 final size:58
Alignment explanation
Indices: 38203076--38203246 Score: 161
Period size: 59 Copynumber: 2.9 Consensus size: 58
38203066 TAGATTATAT
* * * *
38203076 ATTAT-TTTTATAGATTATATAATATGATTTTAGTAAATTCATATAAGAATA-ATTAT
1 ATTATATTTTATAGATTATATATTATGATTTTAGTAAATTCATATAAAAATATTTTAA
* * * ** * * * *
38203132 ATTGA-ATTTTATTAAATTATATATTTTTATTAAATTATATTTA-ATAATAATTATTTTAA
1 ATT-ATATTTTA-TAGATTATATATTATGATTTTAGTAAATTCATATAA-AAATATTTTAA
38203191 ATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAAAATATTT
1 ATTATATTTTATAG-ATTATATATTATGATTTTAGTAAATTCATATAAAAATATTT
38203247 AATACTAGGA
Statistics
Matches: 85, Mismatches: 22, Indels: 13
0.71 0.18 0.11
Matches are distributed among these distances:
56 3 0.04
57 10 0.12
58 28 0.33
59 40 0.47
60 4 0.05
ACGTcount: A:0.42, C:0.01, G:0.05, T:0.52
Consensus pattern (58 bp):
ATTATATTTTATAGATTATATATTATGATTTTAGTAAATTCATATAAAAATATTTTAA
Found at i:38203319 original size:117 final size:117
Alignment explanation
Indices: 38203075--38203320 Score: 283
Period size: 117 Copynumber: 2.1 Consensus size: 117
38203065 GTAGATTATA
* *
38203075 TATTATTTTTATAGATTATATAATATGATTTTAGTAAATTCATATAAGAATAATTATATTGAATT
1 TATTATTTTTATAGATTATATAATATGATTTTAGTAAATTCATATAAAAATAATTATATGGAATT
* ** * * *
38203140 TTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAAT
66 TTATTAAATTACATATTAATAATAAATTATAGTTAATAATAATGA-TTTAAAT
* *
38203193 TA-TA-TTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAAAATATTTAATACTAGG
1 TATTATTTTTATAG-ATTATATAATATGATTTTAGTAAATTCATATAAAAATAATT-ATA-T-GG
38203256 AATTTTATTAAATTACAT-TTAATAAT-AATTAT-GTTAA-AAT-ATGA-TTAAAT
62 AATTTTATTAAATTACATATTAATAATAAATTATAGTTAATAATAATGATTTAAAT
38203306 TATTTATTATTTATA
1 TA-TTATT-TTTATA
38203321 TTAATAAACT
Statistics
Matches: 110, Mismatches: 10, Indels: 17
0.80 0.07 0.12
Matches are distributed among these distances:
113 8 0.07
115 5 0.05
116 12 0.11
117 50 0.45
118 11 0.10
119 6 0.05
120 18 0.16
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.51
Consensus pattern (117 bp):
TATTATTTTTATAGATTATATAATATGATTTTAGTAAATTCATATAAAAATAATTATATGGAATT
TTATTAAATTACATATTAATAATAAATTATAGTTAATAATAATGATTTAAAT
Found at i:38203465 original size:39 final size:41
Alignment explanation
Indices: 38203420--38203525 Score: 135
Period size: 44 Copynumber: 2.5 Consensus size: 41
38203410 GTTACTTATG
* *
38203420 CTATTACACCTCTATTCCATTCAACCAAACACAAGAA-TAC
1 CTATTACGCCTCTATTCCATTCAACCAAACAAAAGAATTAC
38203460 C-ATTACGCCTCTAATCCATTCCATTCAACCAAACAAAAGAATTAC
1 CTATTACGCCTC---T--ATTCCATTCAACCAAACAAAAGAATTAC
38203505 CTATTACGCCTCTATTCCATT
1 CTATTACGCCTCTATTCCATT
38203526 ACGCATCTAT
Statistics
Matches: 57, Mismatches: 2, Indels: 13
0.79 0.03 0.18
Matches are distributed among these distances:
39 9 0.16
40 1 0.02
41 8 0.14
42 1 0.02
43 1 0.02
44 23 0.40
45 4 0.07
46 10 0.18
ACGTcount: A:0.36, C:0.32, G:0.04, T:0.28
Consensus pattern (41 bp):
CTATTACGCCTCTATTCCATTCAACCAAACAAAAGAATTAC
Found at i:38203500 original size:44 final size:46
Alignment explanation
Indices: 38203433--38203525 Score: 154
Period size: 44 Copynumber: 2.1 Consensus size: 46
38203423 TTACACCTCT
*
38203433 ATTCCATTCAACCAAACACAAGAA-TACC-ATTACGCCTCTAATCC
1 ATTCCATTCAACCAAACAAAAGAATTACCTATTACGCCTCTAATCC
*
38203477 ATTCCATTCAACCAAACAAAAGAATTACCTATTACGCCTCTATTCC
1 ATTCCATTCAACCAAACAAAAGAATTACCTATTACGCCTCTAATCC
38203523 ATT
1 ATT
38203526 ACGCATCTAT
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
44 23 0.51
45 4 0.09
46 18 0.40
ACGTcount: A:0.38, C:0.31, G:0.04, T:0.27
Consensus pattern (46 bp):
ATTCCATTCAACCAAACAAAAGAATTACCTATTACGCCTCTAATCC
Found at i:38203528 original size:16 final size:16
Alignment explanation
Indices: 38203507--38203559 Score: 97
Period size: 16 Copynumber: 3.3 Consensus size: 16
38203497 AGAATTACCT
38203507 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
*
38203523 ATTACGCATCTATTCC
1 ATTACGCCTCTATTCC
38203539 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
38203555 ATTAC
1 ATTAC
38203560 AGCGAACCAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.23, C:0.34, G:0.06, T:0.38
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:38204020 original size:41 final size:39
Alignment explanation
Indices: 38203966--38204102 Score: 129
Period size: 41 Copynumber: 3.5 Consensus size: 39
38203956 CGACTTCAAG
*
38203966 TCGAAGAGACACTGGGTGTCAATTTACTACTTCGGATTAAT
1 TCGATGAGACACTGGGTGTCAATTTA-TACTTCGGATT-AT
* *
38204007 TCGATGAGGCACTGGGTGCCAA-TT-TACTTC-GATT-T
1 TCGATGAGACACTGGGTGTCAATTTATACTTCGGATTAT
* *
38204042 AGCTGATGAGACACTGGGTGTCAATTTATTTACTTCGAATTAT
1 -TC-GATGAGACACTGGGTGTCAATTTA--TACTTCGGATTAT
* *
38204085 CCGATGAGGCACTGGGTG
1 TCGATGAGACACTGGGTG
38204103 CCAAACTGGT
Statistics
Matches: 79, Mismatches: 9, Indels: 16
0.76 0.09 0.15
Matches are distributed among these distances:
35 1 0.01
36 1 0.01
37 22 0.28
38 8 0.10
40 2 0.03
41 40 0.51
42 4 0.05
43 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.32
Consensus pattern (39 bp):
TCGATGAGACACTGGGTGTCAATTTATACTTCGGATTAT
Found at i:38210791 original size:85 final size:85
Alignment explanation
Indices: 38210693--38210867 Score: 269
Period size: 85 Copynumber: 2.1 Consensus size: 85
38210683 GACTAAATTC
** *
38210693 GAATTTAGGCAAATAATGAGTAAATTTTTTTTAAAATATTAAATATAAGATTGAATTGTGTTGTA
1 GAATTTAGGCAAATAATGAGTAAAAATTTTTTAAAATATTAAATATAAGATTGAATTGAGTTGTA
*
38210758 TTGATGAATTTTAATTGTTT
66 TTGATGAATTTTAATTATTT
* ** *
38210778 GAATTTGGGCAAATGTTGAGTAAAAATTTTTTGAAATATTAAATATAAGATTGAATTGAGTTGTA
1 GAATTTAGGCAAATAATGAGTAAAAATTTTTTAAAATATTAAATATAAGATTGAATTGAGTTGTA
38210843 TTGATGAATTTTAATTATTT
66 TTGATGAATTTTAATTATTT
*
38210863 TAATT
1 GAATT
38210868 CCATAGCTAA
Statistics
Matches: 81, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
85 81 1.00
ACGTcount: A:0.38, C:0.01, G:0.16, T:0.45
Consensus pattern (85 bp):
GAATTTAGGCAAATAATGAGTAAAAATTTTTTAAAATATTAAATATAAGATTGAATTGAGTTGTA
TTGATGAATTTTAATTATTT
Found at i:38216235 original size:37 final size:36
Alignment explanation
Indices: 38216175--38216268 Score: 116
Period size: 37 Copynumber: 2.6 Consensus size: 36
38216165 AGTACATAAG
* * *
38216175 TAATCCAACCAAAACACGCCAAATTCTCATGAGAGC
1 TAATCCAACCATAACACGCCAAATGCTCATAAGAGC
* *
38216211 TAATCCAACCGATAACACGTCAAATGCTCATAAGAGT
1 TAATCCAACC-ATAACACGCCAAATGCTCATAAGAGC
*
38216248 TAATCCAACTAATAACACGCC
1 TAATCCAAC-CATAACACGCC
38216269 TCGACACTAA
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
36 10 0.20
37 39 0.80
ACGTcount: A:0.41, C:0.29, G:0.11, T:0.19
Consensus pattern (36 bp):
TAATCCAACCATAACACGCCAAATGCTCATAAGAGC
Found at i:38217279 original size:40 final size:40
Alignment explanation
Indices: 38217226--38217324 Score: 110
Period size: 40 Copynumber: 2.5 Consensus size: 40
38217216 GTGTTTGGAT
* *
38217226 AAAAAATGCCGCTAAAAAT-CAAGCATTACCGGTGCTTTTA
1 AAAAAACGCCGCTAAAAATCCAA-CATTACCGGCGCTTTTA
* * * *
38217266 AAAAAACGCCGCTAAAGATCCAATATTAGCGGCGCTTTTC
1 AAAAAACGCCGCTAAAAATCCAACATTACCGGCGCTTTTA
* *
38217306 AGAAAACGCTGCTAAAAAT
1 AAAAAACGCCGCTAAAAAT
38217325 GAGAATTAGC
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
40 46 0.94
41 3 0.06
ACGTcount: A:0.40, C:0.21, G:0.16, T:0.22
Consensus pattern (40 bp):
AAAAAACGCCGCTAAAAATCCAACATTACCGGCGCTTTTA
Found at i:38217473 original size:40 final size:41
Alignment explanation
Indices: 38217395--38217516 Score: 133
Period size: 40 Copynumber: 3.0 Consensus size: 41
38217385 CTTTGAGTTT
* *
38217395 TCGGGGCTTTAGT-GGCGTTTTTCAAAAAGCGTCGCTAATGCA
1 TCGGGGCTTTA-TCGGCATTTTT-GAAAAGCGTCGCTAATGCA
* *
38217437 T-GGGGCTTTATCGGCATTTTTGAAAAGTGTCGCTAATG-T
1 TCGGGGCTTTATCGGCATTTTTGAAAAGCGTCGCTAATGCA
* * *
38217476 TCGAGGCTTTAGCGGCATTTTTGAAGAAGCGCCGCTAATGC
1 TCGGGGCTTTATCGGCATTTTTGAA-AAGCGTCGCTAATGC
38217517 TCAGGACTTT
Statistics
Matches: 68, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
39 1 0.01
40 37 0.54
41 29 0.43
42 1 0.01
ACGTcount: A:0.21, C:0.18, G:0.29, T:0.32
Consensus pattern (41 bp):
TCGGGGCTTTATCGGCATTTTTGAAAAGCGTCGCTAATGCA
Found at i:38217527 original size:41 final size:41
Alignment explanation
Indices: 38217401--38217619 Score: 153
Period size: 41 Copynumber: 5.4 Consensus size: 41
38217391 GTTTTCGGGG
* * * * *
38217401 CTTTAGTGGCGTTTTTCAAAAAGCGTCGCTAATGCAT-GGGG
1 CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC-TCAGGA
* * * * *
38217442 CTTTATCGGCATTTTTG-AAAAGTGTCGCTAATGTTCGAGG-
1 CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC-AGGA
* *
38217482 CTTTAGCGGCATTTTTGAAGAAGCGCCGCTAATGCTCAGGA
1 CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAGGA
* * * ** *
38217523 CTTTAGCAGTGTTTTTGAAGAAA-CACATCTAATGCT-A-TA
1 CTTTAGCGGCGTTTTTGAA-AAAGCGCCGCTAATGCTCAGGA
* * * * *
38217562 TTTTTAACGGCGTTTTTGAAAAAGTGCCGCTAATGCTCGGGT
1 -CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAGGA
38217604 CTTTAGCGGCGTTTTT
1 CTTTAGCGGCGTTTTT
38217620 TAATGATCAG
Statistics
Matches: 136, Mismatches: 33, Indels: 18
0.73 0.18 0.10
Matches are distributed among these distances:
39 5 0.04
40 59 0.43
41 70 0.51
42 2 0.01
ACGTcount: A:0.23, C:0.17, G:0.25, T:0.35
Consensus pattern (41 bp):
CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAGGA
Found at i:38218064 original size:15 final size:14
Alignment explanation
Indices: 38218044--38218081 Score: 58
Period size: 15 Copynumber: 2.6 Consensus size: 14
38218034 CCTATCTTAA
38218044 GGTTTATGGATTAT
1 GGTTTATGGATTAT
*
38218058 GGGTTTAGGGATTAT
1 -GGTTTATGGATTAT
38218073 GGTTTATGG
1 GGTTTATGG
38218082 TTTAAGGGTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 8 0.38
15 13 0.62
ACGTcount: A:0.18, C:0.00, G:0.37, T:0.45
Consensus pattern (14 bp):
GGTTTATGGATTAT
Found at i:38218266 original size:22 final size:22
Alignment explanation
Indices: 38218241--38218378 Score: 74
Period size: 22 Copynumber: 6.4 Consensus size: 22
38218231 TTATCATTAT
38218241 AGTTTAGGGTTTAAGGTTTAGG
1 AGTTTAGGGTTTAAGGTTTAGG
*
38218263 AGTTACTA--GCTTAAGGTTTATGG
1 AGTT--TAGGGTTTAAGGTTTA-GG
* * *
38218286 A--TTATGGGTTTAGGGATTATG
1 AGTTTA-GGGTTTAAGGTTTAGG
* *
38218307 -GTTTATGGTTTAAGGGTTAGG
1 AGTTTAGGGTTTAAGGTTTAGG
* * * *
38218328 -GTTTAAGATTTAAGGGTTAAG
1 AGTTTAGGGTTTAAGGTTTAGG
* * *
38218349 AGTTTATGATTTAGGGTTTAGG
1 AGTTTAGGGTTTAAGGTTTAGG
38218371 -GTTTAGGG
1 AGTTTAGGG
38218379 ATTAGGGATT
Statistics
Matches: 89, Mismatches: 18, Indels: 19
0.71 0.14 0.15
Matches are distributed among these distances:
19 2 0.02
21 38 0.43
22 44 0.49
23 3 0.03
24 2 0.02
ACGTcount: A:0.24, C:0.01, G:0.33, T:0.41
Consensus pattern (22 bp):
AGTTTAGGGTTTAAGGTTTAGG
Found at i:38218297 original size:15 final size:15
Alignment explanation
Indices: 38218277--38218324 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
38218267 ACTAGCTTAA
38218277 GGTTTATGGATTATG
1 GGTTTATGGATTATG
*
38218292 GGTTTAGGGATTAT-
1 GGTTTATGGATTATG
* *
38218306 GGTTTATGGTTTAAG
1 GGTTTATGGATTATG
38218321 GGTT
1 GGTT
38218325 AGGGTTTAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
14 11 0.39
15 17 0.61
ACGTcount: A:0.19, C:0.00, G:0.35, T:0.46
Consensus pattern (15 bp):
GGTTTATGGATTATG
Found at i:38218332 original size:233 final size:233
Alignment explanation
Indices: 38217920--38218346 Score: 775
Period size: 233 Copynumber: 1.8 Consensus size: 233
38217910 CATTACTGAT
38217920 TGTTTTTTAATTTATATATTAAATAATTTCTTATATAATCGTAAAAGAGATAGTATTAATTTTAA
1 TGTTTTTTAATTTATATATTAAATAATTTCTTATATAATCGTAAAAGAGATAGTATTAATTTTAA
*
38217985 AATATTAAATTAATTATCATTATAGTTTAGGGTTTAAGGTTTAGGAGTACCTATCTTAAGGTTTA
66 AATATTAAATTAATTATCATTATAGTTTAGGGTTTAAGGTTTAGGAGTACCTAGCTTAAGGTTTA
* * *
38218050 TGGATTATGGGTTTAGGGATTATGGTTTATGGTTTAAGGGTCGGGGTTTAAGGTTTAGGGGTTAG
131 TGGATTATGGGTTTAGGGATTATGGTTTATGGTTTAAGGGTCAGGGTTTAAGATTTAAGGGTTAG
38218115 GGGATAGGAGTTAGGGGTTTAGGGTTTAGATTAATTAG
196 GGGATAGGAGTTAGGGGTTTAGGGTTTAGATTAATTAG
*
38218153 TGTTTTTTAATTTATATATTAAATGATTTCTTATATAATCGTAAAAGAGATAGTATTAATTTTAA
1 TGTTTTTTAATTTATATATTAAATAATTTCTTATATAATCGTAAAAGAGATAGTATTAATTTTAA
*
38218218 AATATTGAATTAATTATCATTATAGTTTAGGGTTTAAGGTTTAGGAGTTA-CTAGCTTAAGGTTT
66 AATATTAAATTAATTATCATTATAGTTTAGGGTTTAAGGTTTAGGAG-TACCTAGCTTAAGGTTT
*
38218282 ATGGATTATGGGTTTAGGGATTATGGTTTATGGTTTAAGGGTTAGGGTTTAAGATTTAAGGGTTA
130 ATGGATTATGGGTTTAGGGATTATGGTTTATGGTTTAAGGGTCAGGGTTTAAGATTTAAGGGTTA
38218347 AGAGTTTATG
Statistics
Matches: 186, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
233 184 0.99
234 2 0.01
ACGTcount: A:0.31, C:0.03, G:0.23, T:0.44
Consensus pattern (233 bp):
TGTTTTTTAATTTATATATTAAATAATTTCTTATATAATCGTAAAAGAGATAGTATTAATTTTAA
AATATTAAATTAATTATCATTATAGTTTAGGGTTTAAGGTTTAGGAGTACCTAGCTTAAGGTTTA
TGGATTATGGGTTTAGGGATTATGGTTTATGGTTTAAGGGTCAGGGTTTAAGATTTAAGGGTTAG
GGGATAGGAGTTAGGGGTTTAGGGTTTAGATTAATTAG
Found at i:38218376 original size:7 final size:7
Alignment explanation
Indices: 38218242--38218392 Score: 83
Period size: 7 Copynumber: 21.1 Consensus size: 7
38218232 TATCATTATA
38218242 GTTTAGG
1 GTTTAGG
*
38218249 GTTTAAG
1 GTTTAGG
38218256 GTTTAGG
1 GTTTAGG
38218263 AGTTACTA--
1 -GTT--TAGG
* *
38218271 GCTTAAG
1 GTTTAGG
*
38218278 GTTTATG
1 GTTTAGG
*
38218285 GATTATGG
1 GTTTA-GG
38218293 GTTTAGG
1 GTTTAGG
* *
38218300 GATTATG
1 GTTTAGG
*
38218307 GTTTATG
1 GTTTAGG
38218314 GTTTAAGG
1 GTTT-AGG
38218322 G-TTAGG
1 GTTTAGG
*
38218328 GTTTAAG
1 GTTTAGG
*
38218335 ATTTAAGG
1 GTTT-AGG
* *
38218343 GTTAAGA
1 GTTTAGG
*
38218350 GTTTATG
1 GTTTAGG
*
38218357 ATTTAGG
1 GTTTAGG
38218364 GTTTAGG
1 GTTTAGG
38218371 GTTTAGG
1 GTTTAGG
*
38218378 GATTAGG
1 GTTTAGG
*
38218385 GATTAGG
1 GTTTAGG
38218392 G
1 G
38218393 GTTAAAGGTT
Statistics
Matches: 110, Mismatches: 25, Indels: 18
0.72 0.16 0.12
Matches are distributed among these distances:
5 2 0.02
6 4 0.04
7 87 0.79
8 15 0.14
10 2 0.02
ACGTcount: A:0.24, C:0.01, G:0.34, T:0.40
Consensus pattern (7 bp):
GTTTAGG
Found at i:38222723 original size:86 final size:86
Alignment explanation
Indices: 38222555--38222827 Score: 300
Period size: 86 Copynumber: 3.2 Consensus size: 86
38222545 TGTTTTTGCG
* * * * * * *
38222555 AAAAGTGCCGCTAAAGGT-TTGTTTTATAGTGGCGTTTGCGATAAAA-AGTGCTGCTAAAAGTCA
1 AAAAGCGCCGCTAAAGGTCATGTTTTTTAGTGGCGTTTGTGATAAAAGCGT-C-GCTAAAGGCCA
38222618 TG-TTTTTAGCGGCATTTGTGAT
64 TGATTTTTAGCGGCATTTGTGAT
* * *
38222640 AAAAGTGCCGCTAAAGGTCATGTTTTTTAGTGGCATTTGTGACAAAAGCGTCGCTAAAGGCCATG
1 AAAAGCGCCGCTAAAGGTCATGTTTTTTAGTGGCGTTTGTGATAAAAGCGTCGCTAAAGGCCATG
** *
38222705 ACATTTAGCGGCATTTGTGAC
66 ATTTTTAGCGGCATTTGTGAT
** * * * * * *
38222726 AAAAGCGCCATTAAAGGTCATGATCTTTAGCGGCGTTTGTGATAGAAGCGCCACTAAAGGCCATG
1 AAAAGCGCCGCTAAAGGTCATGTTTTTTAGTGGCGTTTGTGATAAAAGCGTCGCTAAAGGCCATG
*
38222791 ATTTTTAGCAGCATTTGTGAT
66 ATTTTTAGCGGCATTTGTGAT
*
38222812 AAAAGCGTCGCTAAAG
1 AAAAGCGCCGCTAAAG
38222828 ACCATGGACT
Statistics
Matches: 156, Mismatches: 29, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
85 29 0.19
86 125 0.80
87 2 0.01
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (86 bp):
AAAAGCGCCGCTAAAGGTCATGTTTTTTAGTGGCGTTTGTGATAAAAGCGTCGCTAAAGGCCATG
ATTTTTAGCGGCATTTGTGAT
Found at i:38222797 original size:129 final size:128
Alignment explanation
Indices: 38222609--38222842 Score: 335
Period size: 129 Copynumber: 1.8 Consensus size: 128
38222599 AAAGTGCTGC
* * * * * **
38222609 TAAAAGTCATGTTTTTAGCGGCATTTGTGATAAAAGTGCCGCTAAAGGTCATGTTTTTTAGTGGC
1 TAAAAGTCATGTCTTTAGCGGCATTTGTGATAAAAGCGCCACTAAAGGCCATGATTTTTAGCAGC
*
38222674 ATTTGTGACAAAAGCGTCGCTAAAGGCCAT-GACATTTAGCGGCATTTGTGACAAAAGCGCCAT
66 ATTTGTGACAAAAGCGTCGCTAAAGACCATGGAC-TTTAGCGGCATTTGTGACAAAAGCGCCAT
* * *
38222737 TAAAGGTCATGATCTTTAGCGGCGTTTGTGATAGAAGCGCCACTAAAGGCCATGATTTTTAGCAG
1 TAAAAGTCATG-TCTTTAGCGGCATTTGTGATAAAAGCGCCACTAAAGGCCATGATTTTTAGCAG
*
38222802 CATTTGTGATAAAAGCGTCGCTAAAGACCATGGACTTTAGC
65 CATTTGTGACAAAAGCGTCGCTAAAGACCATGGACTTTAGC
38222843 AGCGTTGTCT
Statistics
Matches: 92, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
128 10 0.11
129 79 0.86
130 3 0.03
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.29
Consensus pattern (128 bp):
TAAAAGTCATGTCTTTAGCGGCATTTGTGATAAAAGCGCCACTAAAGGCCATGATTTTTAGCAGC
ATTTGTGACAAAAGCGTCGCTAAAGACCATGGACTTTAGCGGCATTTGTGACAAAAGCGCCAT
Found at i:38222833 original size:43 final size:43
Alignment explanation
Indices: 38222555--38222833 Score: 258
Period size: 43 Copynumber: 6.5 Consensus size: 43
38222545 TGTTTTTGCG
* ** * * *
38222555 AAAAGTGCCGCTAAAGG-TTTG-TTTTATAGTGGCGTTTGCGAT
1 AAAAGCGCCGCTAAAGGCCATGATTTT-TAGCGGCATTTGTGAT
* * * *
38222597 AAAAAGTGCTGCTAAAAGTCATG-TTTTTAGCGGCATTTGTGAT
1 -AAAAGCGCCGCTAAAGGCCATGATTTTTAGCGGCATTTGTGAT
* * * * *
38222640 AAAAGTGCCGCTAAAGGTCATGTTTTTTAGTGGCATTTGTGAC
1 AAAAGCGCCGCTAAAGGCCATGATTTTTAGCGGCATTTGTGAT
* ** *
38222683 AAAAGCGTCGCTAAAGGCCATGACATTTAGCGGCATTTGTGAC
1 AAAAGCGCCGCTAAAGGCCATGATTTTTAGCGGCATTTGTGAT
** * * *
38222726 AAAAGCGCCATTAAAGGTCATGATCTTTAGCGGCGTTTGTGAT
1 AAAAGCGCCGCTAAAGGCCATGATTTTTAGCGGCATTTGTGAT
* * *
38222769 AGAAGCGCCACTAAAGGCCATGATTTTTAGCAGCATTTGTGAT
1 AAAAGCGCCGCTAAAGGCCATGATTTTTAGCGGCATTTGTGAT
* *
38222812 AAAAGCGTCGCTAAAGACCATG
1 AAAAGCGCCGCTAAAGGCCATG
38222834 GACTTTAGCA
Statistics
Matches: 198, Mismatches: 36, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
42 20 0.10
43 172 0.87
44 6 0.03
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (43 bp):
AAAAGCGCCGCTAAAGGCCATGATTTTTAGCGGCATTTGTGAT
Found at i:38225883 original size:50 final size:50
Alignment explanation
Indices: 38225794--38225979 Score: 239
Period size: 50 Copynumber: 3.7 Consensus size: 50
38225784 TTATGAGAAC
*
38225794 CCCCATGTAAGACCAT-TCTGGGACATGACGTTGGCACCGAGATGAGAGGT
1 CCCC-TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGT
* *
38225844 CCCCTGTAAGACCATGTTTGGAACATGGCGTTGGCACCGAGATGAGAGGT
1 CCCCTGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGT
* * * * **
38225894 CCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAACT
1 CCCCTGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGT
* * * *
38225944 CCCATGTAAGACCATATCTGGGATATGGCATTGGCA
1 CCCCTGTAAGACCATGTCTGGGACATGGCGTTGGCA
38225980 GTACAGAAAA
Statistics
Matches: 119, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
49 11 0.09
50 108 0.91
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (50 bp):
CCCCTGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGT
Found at i:38226013 original size:49 final size:49
Alignment explanation
Indices: 38225795--38226018 Score: 148
Period size: 50 Copynumber: 4.5 Consensus size: 49
38225785 TATGAGAACC
* * * * * * **
38225795 CCCATGTAAGACCAT-TCTGGGACATGACGTTGGCACCGAGATGAGAGGT
1 CCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CGATAAGAAAACT
* * * * * * * * **
38225844 CCCCTGTAAGACCATGTTTGGAACATGGCGTTGGCACCGAGATGAGAGGT
1 CCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CGATAAGAAAACT
** * *
38225894 CCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAACT
1 CCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CGATAAGAAAACT
* * *
38225944 CCCATGTAAGACCATATCTGGGATATGGCATTGGCA-G-TACAGAAAACAT
1 CCCATGTAAGACCATGTCTGGGACATGGCATGGGCACGATA-AGAAAAC-T
*
38225993 CCCATGTAAGACTATGTCTGGGACAT
1 CCCATGTAAGACCATGTCTGGGACAT
38226019 AGCTTTGGCA
Statistics
Matches: 150, Mismatches: 22, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
47 2 0.01
48 6 0.04
49 38 0.25
50 104 0.69
ACGTcount: A:0.28, C:0.23, G:0.28, T:0.21
Consensus pattern (49 bp):
CCCATGTAAGACCATGTCTGGGACATGGCATGGGCACGATAAGAAAACT
Found at i:38226245 original size:12 final size:12
Alignment explanation
Indices: 38226228--38226266 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
38226218 ATGAGTTATT
38226228 TAAGTAAGCAAG
1 TAAGTAAGCAAG
*
38226240 TAAGTAAACAAG
1 TAAGTAAGCAAG
* *
38226252 TAAGTGAGTAAG
1 TAAGTAAGCAAG
38226264 TAA
1 TAA
38226267 AGAAGCGAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.51, C:0.05, G:0.23, T:0.21
Consensus pattern (12 bp):
TAAGTAAGCAAG
Done.