Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67659327
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 461372 characters in sequence are not A, C, G, or T
File 12 of 216
Found at i:4009290 original size:22 final size:22
Alignment explanation
Indices: 4009265--4009307 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
4009255 TATCCAAACA
4009265 ATAACAATAAAATAGTAGCAAC
1 ATAACAATAAAATAGTAGCAAC
* * *
4009287 ATAATAGTAAAATGGTAGCAA
1 ATAACAATAAAATAGTAGCAA
4009308 AATATGGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.56, C:0.09, G:0.14, T:0.21
Consensus pattern (22 bp):
ATAACAATAAAATAGTAGCAAC
Found at i:4012104 original size:10 final size:9
Alignment explanation
Indices: 4012080--4012139 Score: 52
Period size: 9 Copynumber: 6.7 Consensus size: 9
4012070 CACAACCACG
4012080 ATAAAAATT
1 ATAAAAATT
4012089 ATAAAAATT
1 ATAAAAATT
4012098 ATGAAAAATT
1 AT-AAAAATT
***
4012108 A-AATTTTTT
1 ATAA-AAATT
4012117 ATAAAAATT
1 ATAAAAATT
*
4012126 GTAAAAA-T
1 ATAAAAATT
4012134 ATAAAA
1 ATAAAA
4012140 TATATAGAAA
Statistics
Matches: 40, Mismatches: 8, Indels: 7
0.73 0.15 0.13
Matches are distributed among these distances:
8 8 0.20
9 22 0.55
10 10 0.25
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (9 bp):
ATAAAAATT
Found at i:4012209 original size:21 final size:21
Alignment explanation
Indices: 4012167--4012211 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
4012157 AAAAATTTGT
* *
4012167 AAAATTTTATAAAGCTGTAAG
1 AAAATTATATAAAGATGTAAG
4012188 AAAATTATATAAA-ATGTAAAG
1 AAAATTATATAAAGATGT-AAG
4012209 AAA
1 AAA
4012212 TATAAAATTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 3 0.14
21 18 0.86
ACGTcount: A:0.58, C:0.02, G:0.11, T:0.29
Consensus pattern (21 bp):
AAAATTATATAAAGATGTAAG
Found at i:4015100 original size:13 final size:13
Alignment explanation
Indices: 4015082--4015107 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4015072 AAAGTGCGAG
4015082 CCTGTTGAAGACA
1 CCTGTTGAAGACA
4015095 CCTGTTGAAGACA
1 CCTGTTGAAGACA
4015108 ATATGCAAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.23
Consensus pattern (13 bp):
CCTGTTGAAGACA
Found at i:4018983 original size:19 final size:20
Alignment explanation
Indices: 4018941--4018983 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
4018931 TCATGCTTTC
*
4018941 TATTCACATTTTCATATTCA
1 TATTCACATTTTCAAATTCA
4018961 -ATTCACATTTTCAAATT-A
1 TATTCACATTTTCAAATTCA
4018979 TATTC
1 TATTC
4018984 CACAATCATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 1 0.05
19 20 0.95
ACGTcount: A:0.33, C:0.19, G:0.00, T:0.49
Consensus pattern (20 bp):
TATTCACATTTTCAAATTCA
Found at i:4021573 original size:26 final size:26
Alignment explanation
Indices: 4021525--4021592 Score: 74
Period size: 26 Copynumber: 2.8 Consensus size: 26
4021515 ATATGCATAA
*
4021525 ATATA-ATAATAATAAAATAAAAAAT
1 ATATATATATTAATAAAATAAAAAAT
* *
4021550 GTATATATATTAATAAAA-ATAAAAT
1 ATATATATATTAATAAAATAAAAAAT
4021575 -TATATATA-T-ATAAAATAA
1 ATATATATATTAATAAAATAA
4021593 GATACATATG
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
22 6 0.16
23 2 0.05
24 8 0.22
25 10 0.27
26 11 0.30
ACGTcount: A:0.65, C:0.00, G:0.01, T:0.34
Consensus pattern (26 bp):
ATATATATATTAATAAAATAAAAAAT
Found at i:4021624 original size:3 final size:3
Alignment explanation
Indices: 4021616--4021676 Score: 72
Period size: 3 Copynumber: 20.3 Consensus size: 3
4021606 ATAAATATAT
* *
4021616 ATA ATA ATA ATA AAA ATA ATA ATA AGTA AT- ATA ATA ATA ATA GTA
1 ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA ATA
4021661 ATA TATA AT- ATA ATA A
1 ATA -ATA ATA ATA ATA A
4021677 CAAAGATAAC
Statistics
Matches: 50, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
2 4 0.08
3 40 0.80
4 6 0.12
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:4021649 original size:24 final size:24
Alignment explanation
Indices: 4021612--4021676 Score: 87
Period size: 24 Copynumber: 2.7 Consensus size: 24
4021602 GCGCATAAAT
4021612 ATATATAATAATAATAAAAATAATA
1 ATATATAAT-ATAATAAAAATAATA
* *
4021637 ATA-AGTAATATAATAATAATAGTA
1 ATATA-TAATATAATAAAAATAATA
4021661 ATATATAATATAATAA
1 ATATATAATATAATAA
4021677 CAAAGATAAC
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
24 28 0.78
25 8 0.22
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (24 bp):
ATATATAATATAATAAAAATAATA
Found at i:4022991 original size:33 final size:30
Alignment explanation
Indices: 4022943--4023012 Score: 88
Period size: 31 Copynumber: 2.2 Consensus size: 30
4022933 TATTTATCAT
4022943 ATAAAA-ATCTTTTACTAATTGATAATAAATA
1 ATAAAATATCTTTTACTAATT-AT-ATAAATA
*
4022974 ATAAAATATCTTTTTACTAATTATATATATA
1 ATAAAATATC-TTTTACTAATTATATAAATA
4023005 ATACAAAT
1 ATA-AAAT
4023013 GTTCTCATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
31 15 0.43
32 9 0.26
33 11 0.31
ACGTcount: A:0.50, C:0.07, G:0.01, T:0.41
Consensus pattern (30 bp):
ATAAAATATCTTTTACTAATTATATAAATA
Found at i:4027703 original size:356 final size:353
Alignment explanation
Indices: 4027046--4027955 Score: 1171
Period size: 356 Copynumber: 2.6 Consensus size: 353
4027036 TGTATTTAAG
* * * * * *
4027046 GATGATTGAAGAAAAGCACAATTGATATGCAGACCGAAATAACAAGCACCACAATAATAAGAAAA
1 GATGATTGAAGCAAAGCACAATTGATGTGCAGATCGAACTAACAAGCACCACAATTATAAGCAAA
* * * * * * * * *
4027111 TCCCCGAAACTCCTTACAACACAAATGGCACCTGTTTTTGTCCCAAGGGTAAAGTGAATCTGGAA
66 TCCCTGAAACTCCTTACCACACAAATCGCAACAG--TTTGGCCC-A---TAAGGTGATTCTGGCA
** ** *
4027176 AAAGAGTGAGAGGGTGTTTGGGGTTTAAGGGATGCTGAATCTCAAGGGGC--A-GT---TCAGCA
125 AAAGAGTGAGAGGGTGTTTGGGGTGGAAGGGATGCTGAATCT-GGGGGGCTAATCTAACTCAGCA
4027235 CATTCCTTATGAAGGTTAAATGGATAAGTGCAATCTGAACAGTGGTAAAAGGGACCAGATATTGG
189 CATTCCTTATGAAGGTTAAATGGATAAGTGCAATCTGAACAGTGGTAAAAGGGACCAGATATTGG
* **
4027300 TTTTTGACACCAGGAGCAATCAAGCTCGACTTCCCTGTTATGATTTTGAATGAAGAACAATGGAT
254 TTTTTGACACCAGGAGCAATCAAGCTCGACTTCCCTGTTAGGATTTTGAATGAAGAACAACAGAT
4027365 GGGGGTGCAAAGAATTAGGAAAATTTGCAGCAATA
319 GGGGGTGCAAAGAATTAGGAAAATTTGCAGCAATA
* *
4027400 GATGATTGAAGCAAAGCACAATTGATGTCCAGATCGAACTGACAAGCACCACAATTATAAGCAAA
1 GATGATTGAAGCAAAGCACAATTGATGTGCAGATCGAACTAACAAGCACCACAATTATAAGCAAA
* *
4027465 TCCCTGAAACTTCTTACCACACAAATTGCAACAGTTTGCGCCCCCATAAGGTGATTCTGGCAAAA
66 TCCCTGAAACTCCTTACCACACAAATCGCAACAGTTTG-G--CCCATAAGGTGATTCTGGCAAAA
* *
4027530 GAGTGAGAGTGTGTTTGGGGTGGAGGGGATGCTGAATCTGGGGGGCTAACTCTAACTCAGCACAT
128 GAGTGAGAGGGTGTTTGGGGTGGAAGGGATGCTGAATCTGGGGGGCTAA-TCTAACTCAGCACAT
*
4027595 TCCTTATGAAGGTTAAATGGAT-AGTGCAATCTGAACAGTGGTAAAATGGACCAGATATTGGTTT
192 TCCTTATGAAGGTTAAATGGATAAGTGCAATCTGAACAGTGGTAAAAGGGACCAGATATTGGTTT
* * *
4027659 TTGACA-CACGTAGCAATCAGGCTCGACTTCCTTGTTAGGATTTTGAATGAAGAACAACAGATGG
257 TTGACACCA-GGAGCAATCAAGCTCGACTTCCCTGTTAGGATTTTGAATGAAGAACAACAGATGG
*
4027723 GGGTGCAAAGAATTAGGAAAATTTGCAGCAATG
321 GGGTGCAAAGAATTAGGAAAATTTGCAGCAATA
* * * * *
4027756 GATGATTGAAGCAAAGCACAATTGATGTGCAGATCGAACTTACAATCA-TAGCAAGTATAAACAA
1 GATGATTGAAGCAAAGCACAATTGATGTGCAGATCGAACTAACAAGCACCA-CAATTATAAGCAA
* * * * ** *
4027820 ATCCGTCAAAGTCCTTACCACACAAATCGCACACCG-AAGG---ATAAGGTGATTTTGGCAAAAG
65 ATCCCTGAAACTCCTTACCACACAAATCGCA-ACAGTTTGGCCCATAAGGTGATTCTGGCAAAAG
*
4027881 AGTGAGAGGGTGTTTGGGGTGGAAGGGATGCTGAATCTGGGGGGCTAAGTCTAACTCAGCACATC
129 AGTGAGAGGGTGTTTGGGGTGGAAGGGATGCTGAATCTGGGGGGCTAA-TCTAACTCAGCACATT
4027946 CCTTATGAAG
193 CCTTATGAAG
4027956 ATAAAACTCA
Statistics
Matches: 491, Mismatches: 52, Indels: 30
0.86 0.09 0.05
Matches are distributed among these distances:
350 96 0.20
351 51 0.10
352 5 0.01
354 87 0.18
355 7 0.01
356 211 0.43
357 34 0.07
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.24
Consensus pattern (353 bp):
GATGATTGAAGCAAAGCACAATTGATGTGCAGATCGAACTAACAAGCACCACAATTATAAGCAAA
TCCCTGAAACTCCTTACCACACAAATCGCAACAGTTTGGCCCATAAGGTGATTCTGGCAAAAGAG
TGAGAGGGTGTTTGGGGTGGAAGGGATGCTGAATCTGGGGGGCTAATCTAACTCAGCACATTCCT
TATGAAGGTTAAATGGATAAGTGCAATCTGAACAGTGGTAAAAGGGACCAGATATTGGTTTTTGA
CACCAGGAGCAATCAAGCTCGACTTCCCTGTTAGGATTTTGAATGAAGAACAACAGATGGGGGTG
CAAAGAATTAGGAAAATTTGCAGCAATA
Found at i:4041558 original size:29 final size:31
Alignment explanation
Indices: 4041514--4041571 Score: 93
Period size: 29 Copynumber: 1.9 Consensus size: 31
4041504 AACTTCAACT
*
4041514 TTAAAATATGAAAAGTAGAGAGACTAAATTC
1 TTAAAATATGAAAAGTAGAAAGACTAAATTC
4041545 TTAAAA-AT-AAAAGTAGAAAGACTAAAT
1 TTAAAATATGAAAAGTAGAAAGACTAAAT
4041572 CTTGAATGTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 18 0.69
30 2 0.08
31 6 0.23
ACGTcount: A:0.57, C:0.05, G:0.14, T:0.24
Consensus pattern (31 bp):
TTAAAATATGAAAAGTAGAAAGACTAAATTC
Found at i:4047375 original size:10 final size:10
Alignment explanation
Indices: 4047360--4047390 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
4047350 CCTGCCATGA
*
4047360 TTGCTTGACT
1 TTGCTTAACT
4047370 TTGCTTAACT
1 TTGCTTAACT
4047380 TTGCTTAACT
1 TTGCTTAACT
4047390 T
1 T
4047391 ACATTATTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.16, C:0.19, G:0.13, T:0.52
Consensus pattern (10 bp):
TTGCTTAACT
Found at i:4050989 original size:29 final size:30
Alignment explanation
Indices: 4050956--4051036 Score: 119
Period size: 29 Copynumber: 2.7 Consensus size: 30
4050946 TACATTAGAT
4050956 TTTTTCAAAGTATAGGTACCACATTGGACA
1 TTTTTCAAAGTATAGGTACCACATTGGACA
* *
4050986 -TTTTCAAATTATATGTACCACATTGGACA
1 TTTTTCAAAGTATAGGTACCACATTGGACA
*
4051015 TTTTATGAAAGTATAGGTACCA
1 TTTT-TCAAAGTATAGGTACCA
4051037 AATAATACAC
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
29 27 0.61
30 3 0.07
31 14 0.32
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.36
Consensus pattern (30 bp):
TTTTTCAAAGTATAGGTACCACATTGGACA
Found at i:4051392 original size:23 final size:23
Alignment explanation
Indices: 4051366--4051410 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
4051356 TATTACAGCA
*
4051366 CTTTATTT-GATTCATTTGGTTAC
1 CTTTATTTAGA-TAATTTGGTTAC
*
4051389 CTTTTTTTAGATAATTTGGTTA
1 CTTTATTTAGATAATTTGGTTA
4051411 GAATTTAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 17 0.89
24 2 0.11
ACGTcount: A:0.20, C:0.09, G:0.13, T:0.58
Consensus pattern (23 bp):
CTTTATTTAGATAATTTGGTTAC
Found at i:4052829 original size:24 final size:24
Alignment explanation
Indices: 4052797--4052853 Score: 98
Period size: 24 Copynumber: 2.4 Consensus size: 24
4052787 TCCACCGCCG
4052797 CCACCACCAATA-TGCATGTGACCA
1 CCACCACCAA-ACTGCATGTGACCA
4052821 CCACCACCAAACTGCATGTGACCA
1 CCACCACCAAACTGCATGTGACCA
4052845 CCACCACCA
1 CCACCACCA
4052854 CCTCCACCAT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
23 1 0.03
24 31 0.97
ACGTcount: A:0.33, C:0.44, G:0.11, T:0.12
Consensus pattern (24 bp):
CCACCACCAAACTGCATGTGACCA
Found at i:4052928 original size:114 final size:115
Alignment explanation
Indices: 4052736--4053030 Score: 364
Period size: 120 Copynumber: 2.6 Consensus size: 115
4052726 AATGCATTTG
* * * * * *
4052736 ACCACCACCTCTACCTTGCCTTTTAGCCCCA-C--CAGCACTACTGCTACCACTTCCACCGCCGC
1 ACCACCACCTCCACCATGCCCTTTAGCCCCACCATCAACACTACTGCTACCACTTCCACCACCAC
* * * * *
4052798 CACCACCAATATGCATGTGACCACCACCA-CCAAACTGCATGTGACCACC
66 CACCACCAAAACGCATGTGACCACCACCACCCAAAATACATGTAACCACC
4052847 ACCACCACCTCCACCATGCCCTTTAGCCCCACCATCAACACTACTGCTACCACTTCCACCACCAC
1 ACCACCACCTCCACCATGCCCTTTAGCCCCACCATCAACACTACTGCTACCACTTCCACCACCAC
*
4052912 CACCAGCAAAACGCATGTGACCACCACCATCGCTGCCAAAATACATGTAACCACC
66 CACCACCAAAACGCATGTGACCACCACCA---C--CCAAAATACATGTAACCACC
* * * * *
4052967 ACCACTACCTCCACCATGTCCTTCAACCCCACCATCACCACTACTGCTACCACTTCCACCACCA
1 ACCACCACCTCCACCATGCCCTTTAGCCCCACCATCAACACTACTGCTACCACTTCCACCACCA
4053031 TCTCCACTAG
Statistics
Matches: 158, Mismatches: 17, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
111 28 0.18
112 1 0.01
114 53 0.34
120 76 0.48
ACGTcount: A:0.28, C:0.47, G:0.08, T:0.17
Consensus pattern (115 bp):
ACCACCACCTCCACCATGCCCTTTAGCCCCACCATCAACACTACTGCTACCACTTCCACCACCAC
CACCACCAAAACGCATGTGACCACCACCACCCAAAATACATGTAACCACC
Found at i:4053206 original size:12 final size:12
Alignment explanation
Indices: 4053189--4053496 Score: 155
Period size: 12 Copynumber: 25.8 Consensus size: 12
4053179 CCTATTCTAA
*
4053189 CTTTAGCTTCGG
1 CTTTAGCTTCAG
4053201 CTTTAGCTTCAG
1 CTTTAGCTTCAG
*
4053213 CTTTAGCCTC-G
1 CTTTAGCTTCAG
* * *
4053224 GTTTCAGCCTCAA
1 CTTT-AGCTTCAG
*
4053237 CTTTAGCTTTAG
1 CTTTAGCTTCAG
*
4053249 CTTTAGCTTCAA
1 CTTTAGCTTCAG
4053261 CTTTAGCTTC-G
1 CTTTAGCTTCAG
* **
4053272 ACTTCAGCCGCAG
1 -CTTTAGCTTCAG
*
4053285 CTTTAGCTTTAG
1 CTTTAGCTTCAG
* *
4053297 ATTCT-GCTTTAG
1 CTT-TAGCTTCAG
**
4053309 CTTCGGCTTCAG
1 CTTTAGCTTCAG
* *
4053321 CCTTAGCTTTAG
1 CTTTAGCTTCAG
* *
4053333 CTTCCA-CTTCTG
1 CTT-TAGCTTCAG
*
4053345 C-TTAGCTTTAG
1 CTTTAGCTTCAG
**
4053356 CTTCGGCTTCAG
1 CTTTAGCTTCAG
* *
4053368 CCTTAGCTTTAG
1 CTTTAGCTTCAG
* * *
4053380 CTTCAACTTCGG
1 CTTTAGCTTCAG
* *
4053392 CTTCAGCCTT-GG
1 CTTTAG-CTTCAG
4053404 CTTTAGCTTCAG
1 CTTTAGCTTCAG
* *
4053416 CATTAGCTTTAG
1 CTTTAGCTTCAG
* *
4053428 CATTAGCTTCGG
1 CTTTAGCTTCAG
*
4053440 CTTTAGCTTTAG
1 CTTTAGCTTCAG
*
4053452 C-TTCGACATT-AG
1 CTTTAG-C-TTCAG
*
4053464 CTTTAGCTTCAA
1 CTTTAGCTTCAG
* *
4053476 CATTAGCTTCGG
1 CTTTAGCTTCAG
4053488 CTTTAGCTT
1 CTTTAGCTT
4053497 TAACATTATC
Statistics
Matches: 219, Mismatches: 62, Indels: 30
0.70 0.20 0.10
Matches are distributed among these distances:
10 1 0.00
11 18 0.08
12 186 0.85
13 14 0.06
ACGTcount: A:0.16, C:0.26, G:0.18, T:0.40
Consensus pattern (12 bp):
CTTTAGCTTCAG
Found at i:4053248 original size:6 final size:6
Alignment explanation
Indices: 4053237--4053498 Score: 113
Period size: 6 Copynumber: 43.8 Consensus size: 6
4053227 TCAGCCTCAA
* * * * ***
4053237 CTTTAG CTTTAG CTTTAG CTTCAA CTTTAG C-TTCG ACTTCAG CCGCAG
1 CTTTAG CTTTAG CTTTAG CTTTAG CTTTAG CTTTAG -CTTTAG CTTTAG
* ** * *
4053285 CTTTAG CTTTAG ATTCT-G CTTTAG CTTCGG CTTCAG CCTTAG CTTTAG
1 CTTTAG CTTTAG CTT-TAG CTTTAG CTTTAG CTTTAG CTTTAG CTTTAG
* ** * *
4053333 CTTCCA- CTTCT-G C-TTAG CTTTAG CTTCGG CTTCAG CCTTAG CTTTAG
1 CTT-TAG CTT-TAG CTTTAG CTTTAG CTTTAG CTTTAG CTTTAG CTTTAG
* * ** * * * * *
4053380 CTTCAA CTTCGG CTTCAG CCTTGG CTTTAG CTTCAG CATTAG CTTTAG
1 CTTTAG CTTTAG CTTTAG CTTTAG CTTTAG CTTTAG CTTTAG CTTTAG
* ** * * * *
4053428 CATTAG CTTCGG CTTTAG CTTTAG C-TTCG ACATTAG CTTTAG CTTCAA
1 CTTTAG CTTTAG CTTTAG CTTTAG CTTTAG -CTTTAG CTTTAG CTTTAG
* **
4053476 CATTAG CTTCGG CTTTAG CTTTA
1 CTTTAG CTTTAG CTTTAG CTTTA
4053499 ACATTATCTT
Statistics
Matches: 185, Mismatches: 61, Indels: 20
0.70 0.23 0.08
Matches are distributed among these distances:
4 1 0.01
5 10 0.05
6 167 0.90
7 7 0.04
ACGTcount: A:0.17, C:0.26, G:0.18, T:0.40
Consensus pattern (6 bp):
CTTTAG
Found at i:4053266 original size:18 final size:18
Alignment explanation
Indices: 4053241--4053498 Score: 136
Period size: 18 Copynumber: 14.4 Consensus size: 18
4053231 CCTCAACTTT
4053241 AGCTTTAGCTTTAGCTTC
1 AGCTTTAGCTTTAGCTTC
* *
4053259 AACTTTAGC-TTCGACTTC
1 AGCTTTAGCTTTAG-CTTC
*** *
4053277 AGCCGCAGCTTTAGCTTT
1 AGCTTTAGCTTTAGCTTC
*
4053295 AGATTCT-GCTTTAGCTTC
1 AGCTT-TAGCTTTAGCTTC
* * * *
4053313 GGCTTCAGCCTTAGCTTT
1 AGCTTTAGCTTTAGCTTC
*
4053331 AGCTTCCA-CTTCT-GCTT-
1 AGCTT-TAGCTT-TAGCTTC
**
4053348 AGCTTTAGCTTCGGCTTC
1 AGCTTTAGCTTTAGCTTC
*
4053366 AGCCTTAGCTTTAGCTTC
1 AGCTTTAGCTTTAGCTTC
* ** *
4053384 AACTTCGGCTTCAGCCTT-
1 AGCTTTAGCTTTAG-CTTC
* *
4053402 GGCTTTAGCTTCAGCATT-
1 AGCTTTAGCTTTAGC-TTC
*
4053420 AGCTTTAGCATTAGCTTC
1 AGCTTTAGCTTTAGCTTC
*
4053438 GGCTTTAGCTTTAGCTTC
1 AGCTTTAGCTTTAGCTTC
*
4053456 -GACATTAGCTTTAGCTTC
1 AG-CTTTAGCTTTAGCTTC
* * ** *
4053474 AACATTAGCTTCGGCTTT
1 AGCTTTAGCTTTAGCTTC
4053492 AGCTTTA
1 AGCTTTA
4053499 ACATTATCTT
Statistics
Matches: 180, Mismatches: 46, Indels: 28
0.71 0.18 0.11
Matches are distributed among these distances:
16 1 0.01
17 19 0.11
18 151 0.84
19 9 0.05
ACGTcount: A:0.17, C:0.26, G:0.18, T:0.40
Consensus pattern (18 bp):
AGCTTTAGCTTTAGCTTC
Found at i:4053287 original size:42 final size:42
Alignment explanation
Indices: 4053241--4053335 Score: 136
Period size: 42 Copynumber: 2.3 Consensus size: 42
4053231 CCTCAACTTT
*
4053241 AGCTTTAGCTTTAGCTTCAACTTTAGCTTCGACTTCAGCCGC
1 AGCTTTAGCTTTAGATTCAACTTTAGCTTCGACTTCAGCCGC
** * **
4053283 AGCTTTAGCTTTAGATTCTGCTTTAGCTTCGGCTTCAGCCTT
1 AGCTTTAGCTTTAGATTCAACTTTAGCTTCGACTTCAGCCGC
4053325 AGCTTTAGCTT
1 AGCTTTAGCTT
4053336 CCACTTCTGC
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.17, C:0.25, G:0.18, T:0.40
Consensus pattern (42 bp):
AGCTTTAGCTTTAGATTCAACTTTAGCTTCGACTTCAGCCGC
Found at i:4053382 original size:30 final size:30
Alignment explanation
Indices: 4053191--4053498 Score: 130
Period size: 30 Copynumber: 10.3 Consensus size: 30
4053181 TATTCTAACT
** *
4053191 TTAGCTTCGGCTTTAGCTTCAGCTTTAGCC
1 TTAGCTTTAGCTTTAGCTTCAGCTTCAGCC
* * * * * * * *
4053221 -TCGGTTTCAGCCTCAACTTTAGCTTTAGCT
1 TTAGCTTT-AGCTTTAGCTTCAGCTTCAGCC
* *
4053251 TTAGCTTCAACTTTAGCTTC-GACTTCAGCC
1 TTAGCTTTAGCTTTAGCTTCAG-CTTCAGCC
** * * *
4053281 GCAGCTTTAGCTTTAGATTCTGCTTTAG-C
1 TTAGCTTTAGCTTTAGCTTCAGCTTCAGCC
* * * *
4053310 TTCGGCTTCAGCCTTAGCTTTAGCTTC--CAC
1 TT-AGCTTTAGCTTTAGCTTCAGCTTCAGC-C
* *
4053340 TTCTGC-TTAGCTTTAGCTTCGGCTTCAGCC
1 TT-AGCTTTAGCTTTAGCTTCAGCTTCAGCC
* * *
4053370 TTAGCTTTAGCTTCAACTTCGGCTTCAGCC
1 TTAGCTTTAGCTTTAGCTTCAGCTTCAGCC
* * * *
4053400 TTGGCTTTAGCTTCAGCATT-AGCTTTAGCA
1 TTAGCTTTAGCTTTAGC-TTCAGCTTCAGCC
** * *
4053430 TTAGCTTCGGCTTTAGCTTTAGCTTC-GACA
1 TTAGCTTTAGCTTTAGCTTCAGCTTCAG-CC
* * * *
4053460 TTAGCTTTAGCTTCAACATT-AGCTTCGGCT
1 TTAGCTTTAGCTTTAGC-TTCAGCTTCAGCC
4053490 TTAGCTTTA
1 TTAGCTTTA
4053499 ACATTATCTT
Statistics
Matches: 206, Mismatches: 57, Indels: 30
0.70 0.19 0.10
Matches are distributed among these distances:
29 27 0.13
30 168 0.82
31 11 0.05
ACGTcount: A:0.17, C:0.26, G:0.18, T:0.40
Consensus pattern (30 bp):
TTAGCTTTAGCTTTAGCTTCAGCTTCAGCC
Found at i:4055280 original size:30 final size:30
Alignment explanation
Indices: 4055244--4055315 Score: 81
Period size: 30 Copynumber: 2.4 Consensus size: 30
4055234 AGCCATACCA
* *
4055244 CCACCACCACCAACGCCGCCACCTGCACCT
1 CCACCACCACCAACACCGCCACCTACACCT
* * *
4055274 CCACCACCACTACCACCGCCAGCTACACCT
1 CCACCACCACCAACACCGCCACCTACACCT
**
4055304 TTACCACCACCA
1 CCACCACCACCA
4055316 CCTTCACCTC
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.26, C:0.57, G:0.07, T:0.10
Consensus pattern (30 bp):
CCACCACCACCAACACCGCCACCTACACCT
Found at i:4055323 original size:21 final size:21
Alignment explanation
Indices: 4055284--4055324 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
4055274 CCACCACCAC
* *
4055284 TACCACCGCCAGCTACACCTT
1 TACCACCACCACCTACACCTT
*
4055305 TACCACCACCACCTTCACCT
1 TACCACCACCACCTACACCT
4055325 CCTGCGCCTG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.24, C:0.51, G:0.05, T:0.20
Consensus pattern (21 bp):
TACCACCACCACCTACACCTT
Found at i:4058002 original size:17 final size:17
Alignment explanation
Indices: 4057976--4058017 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
4057966 ACCTAATATA
4057976 CTTT-TTTTCCCTTTAT
1 CTTTCTTTTCCCTTTAT
* *
4057992 CTTTCTTTTCCTTTTTT
1 CTTTCTTTTCCCTTTAT
*
4058009 TTTTCTTTT
1 CTTTCTTTT
4058018 TGATAAAATC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
16 4 0.18
17 18 0.82
ACGTcount: A:0.02, C:0.21, G:0.00, T:0.76
Consensus pattern (17 bp):
CTTTCTTTTCCCTTTAT
Found at i:4058634 original size:3 final size:3
Alignment explanation
Indices: 4058626--4058736 Score: 89
Period size: 3 Copynumber: 37.0 Consensus size: 3
4058616 AAGAGGTGAC
* ** * * * * **
4058626 GGT GGT GGT GGT GGA GGT GCA GTT GGC AGT GGT GGT GGT GGA GGT GCA
1 GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT
* * * *
4058674 GGT GGC AGT GGT GGT GGT GGT GGT GGT GGA GGT -GT AGGT GGC GGT
1 GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT -GGT GGT GGT
4058719 GGT GGT GGT GGT GGT GGT
1 GGT GGT GGT GGT GGT GGT
4058737 ATGGCTGCTG
Statistics
Matches: 81, Mismatches: 25, Indels: 4
0.74 0.23 0.04
Matches are distributed among these distances:
2 2 0.02
3 77 0.95
4 2 0.02
ACGTcount: A:0.07, C:0.05, G:0.61, T:0.27
Consensus pattern (3 bp):
GGT
Found at i:4058665 original size:27 final size:27
Alignment explanation
Indices: 4058627--4058698 Score: 126
Period size: 27 Copynumber: 2.7 Consensus size: 27
4058617 AGAGGTGACG
*
4058627 GTGGTGGTGGTGGAGGTGCAGTTGGCA
1 GTGGTGGTGGTGGAGGTGCAGGTGGCA
4058654 GTGGTGGTGGTGGAGGTGCAGGTGGCA
1 GTGGTGGTGGTGGAGGTGCAGGTGGCA
*
4058681 GTGGTGGTGGTGGTGGTG
1 GTGGTGGTGGTGGAGGTG
4058699 GTGGAGGTGT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.08, C:0.06, G:0.60, T:0.26
Consensus pattern (27 bp):
GTGGTGGTGGTGGAGGTGCAGGTGGCA
Found at i:4058694 original size:36 final size:36
Alignment explanation
Indices: 4058654--4058736 Score: 148
Period size: 36 Copynumber: 2.3 Consensus size: 36
4058644 GCAGTTGGCA
4058654 GTGGTGGTGGTGGAGGTGCAGGTGGCAGTGGTGGTG
1 GTGGTGGTGGTGGAGGTGCAGGTGGCAGTGGTGGTG
* *
4058690 GTGGTGGTGGTGGAGGTGTAGGTGGCGGTGGTGGTG
1 GTGGTGGTGGTGGAGGTGCAGGTGGCAGTGGTGGTG
4058726 GTGGTGGTGGT
1 GTGGTGGTGGT
4058737 ATGGCTGCTG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
36 45 1.00
ACGTcount: A:0.06, C:0.04, G:0.63, T:0.28
Consensus pattern (36 bp):
GTGGTGGTGGTGGAGGTGCAGGTGGCAGTGGTGGTG
Found at i:4058713 original size:27 final size:28
Alignment explanation
Indices: 4058618--4058734 Score: 98
Period size: 27 Copynumber: 4.2 Consensus size: 28
4058608 GGAGGTGGAA
4058618 GAGGTG-ACGGTGGTGGTGGTGGAGGTG
1 GAGGTGCACGGTGGTGGTGGTGGAGGTG
* *
4058645 CAGTTGGCA--GTGGTGGTGGTGGAGGTG
1 GAGGT-GCACGGTGGTGGTGGTGGAGGTG
* * *
4058672 CAGGTGGCAGTGGTGGTGGTGGTGGTGGTG
1 GAGGT-GCA-CGGTGGTGGTGGTGGAGGTG
* * *
4058702 GAGGTGTA-GGTGGCGGTGGTGGTGGTG
1 GAGGTGCACGGTGGTGGTGGTGGAGGTG
*
4058729 GTGGTG
1 GAGGTG
4058735 GTATGGCTGC
Statistics
Matches: 77, Mismatches: 8, Indels: 10
0.81 0.08 0.11
Matches are distributed among these distances:
27 52 0.68
28 1 0.01
29 3 0.04
30 21 0.27
ACGTcount: A:0.09, C:0.05, G:0.61, T:0.26
Consensus pattern (28 bp):
GAGGTGCACGGTGGTGGTGGTGGAGGTG
Found at i:4059984 original size:18 final size:18
Alignment explanation
Indices: 4059965--4060267 Score: 155
Period size: 18 Copynumber: 16.5 Consensus size: 18
4059955 GATGAAGTTA
* * *
4059965 AAGCTGAAGCCGAAGCTA
1 AAGCTAAAGCTGAAGCTG
* *
4059983 AAGCTAAGGCTGAAGCCG
1 AAGCTAAAGCTGAAGCTG
* *
4060001 AAGCTAAAGTTAAAGCTG
1 AAGCTAAAGCTGAAGCTG
* *
4060019 AAGCTAAAGCTGAAACTA
1 AAGCTAAAGCTGAAGCTG
* * *
4060037 AATCTAAGGCTGAAGCCG
1 AAGCTAAAGCTGAAGCTG
*
4060055 AAGCTAAATCTAAGGCTGAAGCCG
1 AAGCT--A---AA-GCTGAAGCTG
* *
4060079 AAGCTAAAGTTGAGGCTG
1 AAGCTAAAGCTGAAGCTG
*
4060097 AAGATAAAGCT-AAGGCTG
1 AAGCTAAAGCTGAA-GCTG
* * * *
4060115 AAACCAAAGCTAAAGCCG
1 AAGCTAAAGCTGAAGCTG
* *
4060133 AAGC-AGAAGCTAAAGCAG
1 AAGCTA-AAGCTGAAGCTG
* *
4060151 AAGC-AGAAGCTAAAGCTA
1 AAGCTA-AAGCTGAAGCTG
* * *
4060169 AAGCTGAAGCCGAAGCTA
1 AAGCTAAAGCTGAAGCTG
*** *
4060187 AAGCTGGTGCTGAAGCTA
1 AAGCTAAAGCTGAAGCTG
4060205 AAGCTAAAGCTGAAGCTG
1 AAGCTAAAGCTGAAGCTG
** * *
4060223 AAGGAAAAGCTGAATCTA
1 AAGCTAAAGCTGAAGCTG
* *
4060241 AAGCAAAAGGT-AATGCTG
1 AAGCTAAAGCTGAA-GCTG
4060259 AAGCTAAAG
1 AAGCTAAAG
4060268 TTGGAATAGG
Statistics
Matches: 221, Mismatches: 53, Indels: 22
0.75 0.18 0.07
Matches are distributed among these distances:
17 4 0.02
18 195 0.88
19 4 0.02
20 1 0.00
22 1 0.00
23 1 0.00
24 15 0.07
ACGTcount: A:0.42, C:0.17, G:0.26, T:0.15
Consensus pattern (18 bp):
AAGCTAAAGCTGAAGCTG
Found at i:4059999 original size:24 final size:24
Alignment explanation
Indices: 4059967--4060130 Score: 151
Period size: 24 Copynumber: 6.8 Consensus size: 24
4059957 TGAAGTTAAA
4059967 GCTGAAGCCGAAGCTAAAGCTAAG
1 GCTGAAGCCGAAGCTAAAGCTAAG
* *
4059991 GCTGAAGCCGAAGCTAAAGTTAAA
1 GCTGAAGCCGAAGCTAAAGCTAAG
* *
4060015 GCTGAAGCTAAAGCTGAAACTAAATCTAAG
1 GCTGAAGC-----C-GAAGCTAAAGCTAAG
*
4060045 GCTGAAGCCGAAGCTAAATCTAAG
1 GCTGAAGCCGAAGCTAAAGCTAAG
* *
4060069 GCTGAAGCCGAAGCTAAAGTTGAG
1 GCTGAAGCCGAAGCTAAAGCTAAG
4060093 GCTGAA---G-A--TAAAGCTAAG
1 GCTGAAGCCGAAGCTAAAGCTAAG
* *
4060111 GCTGAAACCAAAGCTAAAGC
1 GCTGAAGCCGAAGCTAAAGC
4060131 CGAAGCAGAA
Statistics
Matches: 115, Mismatches: 13, Indels: 24
0.76 0.09 0.16
Matches are distributed among these distances:
18 14 0.12
20 1 0.01
21 1 0.01
22 1 0.01
24 77 0.67
25 1 0.01
29 1 0.01
30 19 0.17
ACGTcount: A:0.40, C:0.18, G:0.26, T:0.16
Consensus pattern (24 bp):
GCTGAAGCCGAAGCTAAAGCTAAG
Found at i:4060009 original size:42 final size:42
Alignment explanation
Indices: 4059963--4060225 Score: 245
Period size: 42 Copynumber: 6.4 Consensus size: 42
4059953 ATGATGAAGT
*
4059963 TAAAGCTGAAGCCGAAGCTAAAGCTAAGGCTGAAGCCGAAGC
1 TAAAGCTGAAGCCGAAGCTAAAGCTAAGGCTGAAGCCAAAGC
* * * * * *
4060005 TAAAG-T-TA----AAGCTGAAGCTAAAGCTGAAACTAAATC
1 TAAAGCTGAAGCCGAAGCTAAAGCTAAGGCTGAAGCCAAAGC
* * *
4060041 TAAGGCTGAAGCCGAAGCTAAATCTAAGGCTGAAGCCGAAGC
1 TAAAGCTGAAGCCGAAGCTAAAGCTAAGGCTGAAGCCAAAGC
* * * * *
4060083 TAAAGTTGAGGCTGAAGATAAAGCTAAGGCTGAAACCAAAGC
1 TAAAGCTGAAGCCGAAGCTAAAGCTAAGGCTGAAGCCAAAGC
* * * * *
4060125 TAAAGCCGAAGCAGAAGCTAAAGC-AGAAGCAGAAGCTAAAGC
1 TAAAGCTGAAGCCGAAGCTAAAGCTA-AGGCTGAAGCCAAAGC
* *
4060167 TAAAGCTGAAGCCGAAGCTAAAGCT-GGTGCTGAAGCTAAAGC
1 TAAAGCTGAAGCCGAAGCTAAAGCTAAG-GCTGAAGCCAAAGC
*
4060209 TAAAGCTGAAGCTGAAG
1 TAAAGCTGAAGCCGAAG
4060226 GAAAAGCTGA
Statistics
Matches: 173, Mismatches: 39, Indels: 18
0.75 0.17 0.08
Matches are distributed among these distances:
36 26 0.15
37 1 0.01
38 1 0.01
40 1 0.01
41 2 0.01
42 142 0.82
ACGTcount: A:0.41, C:0.18, G:0.26, T:0.15
Consensus pattern (42 bp):
TAAAGCTGAAGCCGAAGCTAAAGCTAAGGCTGAAGCCAAAGC
Found at i:4060016 original size:12 final size:12
Alignment explanation
Indices: 4059963--4060267 Score: 125
Period size: 12 Copynumber: 25.4 Consensus size: 12
4059953 ATGATGAAGT
*
4059963 TAAAGCTGAAGC
1 TAAAGCTAAAGC
**
4059975 CGAAGCTAAAGC
1 TAAAGCTAAAGC
* *
4059987 TAAGGCTGAAGC
1 TAAAGCTAAAGC
** *
4059999 CGAAGCTAAAGT
1 TAAAGCTAAAGC
*
4060011 TAAAGCTGAAGC
1 TAAAGCTAAAGC
4060023 TAAAGCTGAAA-C
1 TAAAGCT-AAAGC
* *
4060035 TAAATCTAAGGC
1 TAAAGCTAAAGC
* **
4060047 TGAAGCCGAAGC
1 TAAAGCTAAAGC
* *
4060059 TAAATCTAAGGC
1 TAAAGCTAAAGC
* **
4060071 TGAAGCCGAAGC
1 TAAAGCTAAAGC
* * *
4060083 TAAAGTTGAGGC
1 TAAAGCTAAAGC
* *
4060095 TGAAGATAAAGC
1 TAAAGCTAAAGC
*
4060107 TAAGGCTGAAA-C
1 TAAAGCT-AAAGC
*
4060119 CAAAGCTAAAGC
1 TAAAGCTAAAGC
**
4060131 CGAAGC-AGAAGC
1 TAAAGCTA-AAGC
4060143 TAAAGC-AGAAGC
1 TAAAGCTA-AAGC
4060155 -AGAAGCTAAAGC
1 TA-AAGCTAAAGC
*
4060167 TAAAGCTGAAGC
1 TAAAGCTAAAGC
**
4060179 CGAAGCTAAAGC
1 TAAAGCTAAAGC
*** *
4060191 TGGTGCTGAAGC
1 TAAAGCTAAAGC
4060203 TAAAGCTAAAGC
1 TAAAGCTAAAGC
* * *
4060215 TGAAGCTGAAGG
1 TAAAGCTAAAGC
* * *
4060227 AAAAGCTGAATC
1 TAAAGCTAAAGC
* *
4060239 TAAAGCAAAAGG
1 TAAAGCTAAAGC
* *
4060251 TAATGCTGAAGC
1 TAAAGCTAAAGC
4060263 TAAAG
1 TAAAG
4060268 TTGGAATAGG
Statistics
Matches: 206, Mismatches: 79, Indels: 16
0.68 0.26 0.05
Matches are distributed among these distances:
11 7 0.03
12 192 0.93
13 7 0.03
ACGTcount: A:0.42, C:0.17, G:0.26, T:0.15
Consensus pattern (12 bp):
TAAAGCTAAAGC
Found at i:4060147 original size:24 final size:24
Alignment explanation
Indices: 4059963--4060244 Score: 141
Period size: 24 Copynumber: 12.2 Consensus size: 24
4059953 ATGATGAAGT
*
4059963 TAAAGCTGAAGCCGAAGCTAAAGC
1 TAAAGCTGAAGCAGAAGCTAAAGC
* * *
4059987 TAAGGCTGAAGCCGAAGCTAAAGT
1 TAAAGCTGAAGCAGAAGCTAAAGC
4060011 TAAAGCTGAAGCTA-AAGCTGAAA-C
1 TAAAGCTGAAGC-AGAAGCT-AAAGC
* * **
4060035 TAAATCT-AAGGCTGAAGCCGAAGC
1 TAAAGCTGAA-GCAGAAGCTAAAGC
* * **
4060059 TAAATCT-AAGGCTGAAGCCGAAGC
1 TAAAGCTGAA-GCAGAAGCTAAAGC
* * * *
4060083 TAAAGTTGAGGCTGAAGATAAAGC
1 TAAAGCTGAAGCAGAAGCTAAAGC
* *
4060107 TAAGGCTGAAACCA-AAGCTAAAGC
1 TAAAGCTG-AAGCAGAAGCTAAAGC
4060131 -----C-GAAGCAGAAGCTAAAGC
1 TAAAGCTGAAGCAGAAGCTAAAGC
4060149 --A----GAAGCAGAAGCTAAAGC
1 TAAAGCTGAAGCAGAAGCTAAAGC
*
4060167 TAAAGCTGAAGCCGAAGCTAAAGC
1 TAAAGCTGAAGCAGAAGCTAAAGC
***
4060191 TGGTGCTGAAGCTA-AAGCTAAAGC
1 TAAAGCTGAAGC-AGAAGCTAAAGC
* * * * *
4060215 TGAAGCTGAAGGAAAAGCTGAATC
1 TAAAGCTGAAGCAGAAGCTAAAGC
4060239 TAAAGC
1 TAAAGC
4060245 AAAAGGTAAT
Statistics
Matches: 208, Mismatches: 33, Indels: 34
0.76 0.12 0.12
Matches are distributed among these distances:
17 4 0.02
18 28 0.13
19 1 0.00
20 1 0.00
23 5 0.02
24 163 0.78
25 6 0.03
ACGTcount: A:0.41, C:0.18, G:0.26, T:0.15
Consensus pattern (24 bp):
TAAAGCTGAAGCAGAAGCTAAAGC
Found at i:4060510 original size:54 final size:54
Alignment explanation
Indices: 4060428--4060544 Score: 198
Period size: 54 Copynumber: 2.2 Consensus size: 54
4060418 CTAGTGGAGA
* * *
4060428 TGGTGGTGGAAGTGGTAGCAGTAGTGTTGATGGTGGGGCTGAAGGGCATGGTGG
1 TGGTGGTGGAAGTGGTAGCAGTAATGTTGATGGCGGGACTGAAGGGCATGGTGG
4060482 TGGTGGTGGAAGTGGTAGCAGTAATGTTGATGGCGGGACTGAAGGGCATGGTGG
1 TGGTGGTGGAAGTGGTAGCAGTAATGTTGATGGCGGGACTGAAGGGCATGGTGG
*
4060536 AGGTGGTGG
1 TGGTGGTGG
4060545 TGGTGGTCAC
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 59 1.00
ACGTcount: A:0.18, C:0.06, G:0.51, T:0.25
Consensus pattern (54 bp):
TGGTGGTGGAAGTGGTAGCAGTAATGTTGATGGCGGGACTGAAGGGCATGGTGG
Found at i:4060585 original size:90 final size:90
Alignment explanation
Indices: 4060476--4060641 Score: 264
Period size: 90 Copynumber: 1.8 Consensus size: 90
4060466 CTGAAGGGCA
*
4060476 TGGTGGTGGTGGTGGAAGTGGTAGCAGTAATGTTGATGGCGG-GACTGAAGG-GCATGGTGGAGG
1 TGGTGGTGGTGGTGGAAGTGGTAGCAGTAATGTTGATGGCGGCG-CTAAAGGAG-ATGGTGGAGG
4060539 TGGTGGTGGTGGTCACATTCATTTTGC
64 TGGTGGTGGTGGTCACATTCATTTTGC
* * *
4060566 TGGTGGTGGTGGTGGAAGTGGTAGCAGTAGTGTTGATGGTGGCGCTAAAGGAGGTGGTGGAGGTG
1 TGGTGGTGGTGGTGGAAGTGGTAGCAGTAATGTTGATGGCGGCGCTAAAGGAGATGGTGGAGGTG
4060631 GTGGTGGTGGT
66 GTGGTGGTGGT
4060642 GGAAGTGGTA
Statistics
Matches: 70, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
90 68 0.97
91 2 0.03
ACGTcount: A:0.16, C:0.07, G:0.49, T:0.28
Consensus pattern (90 bp):
TGGTGGTGGTGGTGGAAGTGGTAGCAGTAATGTTGATGGCGGCGCTAAAGGAGATGGTGGAGGTG
GTGGTGGTGGTCACATTCATTTTGC
Found at i:4060629 original size:9 final size:9
Alignment explanation
Indices: 4060615--4060650 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
4060605 TGGCGCTAAA
4060615 GGAGGTGGT
1 GGAGGTGGT
4060624 GGAGGTGGT
1 GGAGGTGGT
*
4060633 GGTGGTGGT
1 GGAGGTGGT
*
4060642 GGAAGTGGT
1 GGAGGTGGT
4060651 AGCAATAATG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.11, C:0.00, G:0.64, T:0.25
Consensus pattern (9 bp):
GGAGGTGGT
Found at i:4060642 original size:63 final size:63
Alignment explanation
Indices: 4060566--4060704 Score: 226
Period size: 63 Copynumber: 2.2 Consensus size: 63
4060556 TTCATTTTGC
* * *
4060566 TGGTGGTGGTGGTGGAAGTGGTAGCAGTAGTGTTGATGGTGGCGCTAAAGGAG-GTGGTGGAGG
1 TGGTGGTGGTGGTGGAAGTGGTAGCAATAATGTTGATGGTGGCGCTAAAGG-GCATGGTGGAGG
*
4060629 TGGTGGTGGTGGTGGAAGTGGTAGCAATAATGTTGATGGTGGGGCTAAAGGGCATGGTGGAGG
1 TGGTGGTGGTGGTGGAAGTGGTAGCAATAATGTTGATGGTGGCGCTAAAGGGCATGGTGGAGG
4060692 TGGTGGTGGTGGT
1 TGGTGGTGGTGGT
4060705 CACATGCATT
Statistics
Matches: 71, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
62 1 0.01
63 70 0.99
ACGTcount: A:0.17, C:0.04, G:0.52, T:0.27
Consensus pattern (63 bp):
TGGTGGTGGTGGTGGAAGTGGTAGCAATAATGTTGATGGTGGCGCTAAAGGGCATGGTGGAGG
Found at i:4063255 original size:42 final size:43
Alignment explanation
Indices: 4063196--4063280 Score: 154
Period size: 42 Copynumber: 2.0 Consensus size: 43
4063186 TCTTTTCTAG
*
4063196 TTTAGTTTTAAAAGTGATATTCATCATATTAATACAT-TTATA
1 TTTAGTTCTAAAAGTGATATTCATCATATTAATACATATTATA
4063238 TTTAGTTCTAAAAGTGATATTCATCATATTAATACATATTATA
1 TTTAGTTCTAAAAGTGATATTCATCATATTAATACATATTATA
4063281 AAATGATTCT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
42 36 0.88
43 5 0.12
ACGTcount: A:0.39, C:0.08, G:0.07, T:0.46
Consensus pattern (43 bp):
TTTAGTTCTAAAAGTGATATTCATCATATTAATACATATTATA
Found at i:4065543 original size:13 final size:13
Alignment explanation
Indices: 4065525--4065587 Score: 74
Period size: 13 Copynumber: 4.8 Consensus size: 13
4065515 TTTTCATTGT
*
4065525 TTTTGAAAGGTGC
1 TTTTGAAAAGTGC
4065538 TTTTGAAAAGTGC
1 TTTTGAAAAGTGC
*
4065551 -TGTGAAAAAGTGC
1 TTTTG-AAAAGTGC
* *
4065564 TTTTGAGAAGTAC
1 TTTTGAAAAGTGC
4065577 TTTTGAAAAGT
1 TTTTGAAAAGT
4065588 TTGGTTTAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
12 3 0.07
13 36 0.86
14 3 0.07
ACGTcount: A:0.32, C:0.06, G:0.25, T:0.37
Consensus pattern (13 bp):
TTTTGAAAAGTGC
Found at i:4066789 original size:24 final size:24
Alignment explanation
Indices: 4066730--4066808 Score: 94
Period size: 24 Copynumber: 3.4 Consensus size: 24
4066720 TAATATGCTG
*
4066730 TTATTTTAAA-TTATCAT-TAATA
1 TTATTTTAAACTTATCATATACTA
*
4066752 TTA-TTTAAATTTATCATATACTA
1 TTATTTTAAACTTATCATATACTA
*
4066775 -TAGTTTTAAACTTATCATATATTA
1 TTA-TTTTAAACTTATCATATACTA
4066799 TTATTTTAAA
1 TTATTTTAAA
4066809 TGCATTACGT
Statistics
Matches: 49, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
21 6 0.12
22 12 0.24
23 4 0.08
24 25 0.51
25 2 0.04
ACGTcount: A:0.39, C:0.06, G:0.01, T:0.53
Consensus pattern (24 bp):
TTATTTTAAACTTATCATATACTA
Found at i:4070999 original size:27 final size:27
Alignment explanation
Indices: 4070969--4071021 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
4070959 TAAGTGAAAC
4070969 GGGGCGCATTGGAGTTCTAGTTTAAAT
1 GGGGCGCATTGGAGTTCTAGTTTAAAT
*
4070996 GGGGTGCATTGGAGTTCTAGTTTAAA
1 GGGGCGCATTGGAGTTCTAGTTTAAA
4071022 CGTAACGTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.23, C:0.09, G:0.34, T:0.34
Consensus pattern (27 bp):
GGGGCGCATTGGAGTTCTAGTTTAAAT
Found at i:4071196 original size:2 final size:2
Alignment explanation
Indices: 4071189--4071213 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
4071179 ATGAAATTTG
4071189 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
4071214 TTCTTCTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:4074278 original size:21 final size:21
Alignment explanation
Indices: 4074252--4074292 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
4074242 CAAATTTAAA
4074252 ACCACCACCAACATTACCACC
1 ACCACCACCAACATTACCACC
* *
4074273 ACCACCACCACCATTTCCAC
1 ACCACCACCAACATTACCAC
4074293 TTACTTTTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.34, C:0.54, G:0.00, T:0.12
Consensus pattern (21 bp):
ACCACCACCAACATTACCACC
Found at i:4074332 original size:12 final size:12
Alignment explanation
Indices: 4074315--4074442 Score: 143
Period size: 12 Copynumber: 10.7 Consensus size: 12
4074305 GTCCTCCTAT
4074315 TTCGGCTTTTGC
1 TTCGGCTTTTGC
*
4074327 TTCGGCCTTTGC
1 TTCGGCTTTTGC
*
4074339 TTCGGCTTTTCC
1 TTCGGCTTTTGC
*
4074351 TTCGGCCTTTGC
1 TTCGGCTTTTGC
*
4074363 TTTGGCTTTTGC
1 TTCGGCTTTTGC
*
4074375 TTC-GTTGTTTGC
1 TTCGGCT-TTTGC
*
4074387 TTCGG-TTTCAGC
1 TTCGGCTTT-TGC
4074399 TTCGGCTTTTGC
1 TTCGGCTTTTGC
***
4074411 TTCGGCTTCAAC
1 TTCGGCTTTTGC
4074423 TTCGGCTTTTGC
1 TTCGGCTTTTGC
4074435 TTCGGCTT
1 TTCGGCTT
4074443 CAGCTTTGGC
Statistics
Matches: 95, Mismatches: 17, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
11 4 0.04
12 87 0.92
13 4 0.04
ACGTcount: A:0.02, C:0.27, G:0.23, T:0.48
Consensus pattern (12 bp):
TTCGGCTTTTGC
Found at i:4074418 original size:6 final size:6
Alignment explanation
Indices: 4074385--4074466 Score: 56
Period size: 6 Copynumber: 13.7 Consensus size: 6
4074375 TTCGTTGTTT
* * ** * * **
4074385 GCTTCG GTTTCA GCTTCG GCTTTT GCTTCG GCTTCA ACTTCG GCTTTT
1 GCTTCG GCTTCG GCTTCG GCTTCG GCTTCG GCTTCG GCTTCG GCTTCG
* * * *
4074433 GCTTCG GCTTCA GCTTTG GCTTCA GCTTCA GCTT
1 GCTTCG GCTTCG GCTTCG GCTTCG GCTTCG GCTT
4074467 TAGCATTTCC
Statistics
Matches: 55, Mismatches: 21, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
6 55 1.00
ACGTcount: A:0.07, C:0.28, G:0.23, T:0.41
Consensus pattern (6 bp):
GCTTCG
Found at i:4074448 original size:12 final size:12
Alignment explanation
Indices: 4074385--4074466 Score: 92
Period size: 12 Copynumber: 6.8 Consensus size: 12
4074375 TTCGTTGTTT
*
4074385 GCTTCGGTTTCA
1 GCTTCGGCTTCA
**
4074397 GCTTCGGCTTTT
1 GCTTCGGCTTCA
4074409 GCTTCGGCTTCA
1 GCTTCGGCTTCA
* **
4074421 ACTTCGGCTTTT
1 GCTTCGGCTTCA
4074433 GCTTCGGCTTCA
1 GCTTCGGCTTCA
*
4074445 GCTTTGGCTTCA
1 GCTTCGGCTTCA
*
4074457 GCTTCAGCTT
1 GCTTCGGCTT
4074467 TAGCATTTCC
Statistics
Matches: 56, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
12 56 1.00
ACGTcount: A:0.07, C:0.28, G:0.23, T:0.41
Consensus pattern (12 bp):
GCTTCGGCTTCA
Found at i:4074601 original size:6 final size:6
Alignment explanation
Indices: 4074592--4074831 Score: 108
Period size: 6 Copynumber: 40.0 Consensus size: 6
4074582 TTCTGCTTTT
* * * *
4074592 GCTTCA GCTTCA GCTTCA GCTTCAA CCTTTC- -CTTCA GTTTTA GCTTTA
1 GCTTCA GCTTCA GCTTCA GCTTC-A GC-TTCA GCTTCA GCTTCA GCTTCA
** * * *
4074640 GCTTCA GCTTTG GCTTCA -CTTTTA GCCTCA GCTTTA GCTTCA GCTTCA
1 GCTTCA GCTTCA GCTTCA GC-TTCA GCTTCA GCTTCA GCTTCA GCTTCA
* * * * * * * * *
4074688 GCTTTA GCTTCT TCTTTA GATTTA GCTTTA GCTTCA GATTCA GCTTTA
1 GCTTCA GCTTCA GCTTCA GCTTCA GCTTCA GCTTCA GCTTCA GCTTCA
* * * * ** * * *
4074736 GCTTCA TCTTTA ACTTTA GCTTGT GCTTCA TCTTCA GCTTTA ACTTCA
1 GCTTCA GCTTCA GCTTCA GCTTCA GCTTCA GCTTCA GCTTCA GCTTCA
* * * * * * * * *
4074784 TCTTTA GCTTTA GCTTGA GGTTGA GTTTCA GCTTTA GCTTTA GCTTCA
1 GCTTCA GCTTCA GCTTCA GCTTCA GCTTCA GCTTCA GCTTCA GCTTCA
4074832 TCTTTACCAC
Statistics
Matches: 176, Mismatches: 52, Indels: 12
0.73 0.22 0.05
Matches are distributed among these distances:
4 3 0.02
5 2 0.01
6 165 0.94
7 3 0.02
8 3 0.02
ACGTcount: A:0.17, C:0.24, G:0.15, T:0.44
Consensus pattern (6 bp):
GCTTCA
Found at i:4074601 original size:12 final size:12
Alignment explanation
Indices: 4074534--4074613 Score: 72
Period size: 12 Copynumber: 6.7 Consensus size: 12
4074524 GTCCTCCTAT
4074534 TTCAGCTTTTGC
1 TTCAGCTTTTGC
* *
4074546 TTTAGCCTTTGC
1 TTCAGCTTTTGC
*
4074558 TTC-GGTGTTTGC
1 TTCAGCT-TTTGC
* *
4074570 TTCGGCCTTTGC
1 TTCAGCTTTTGC
*
4074582 TTCTGCTTTTGC
1 TTCAGCTTTTGC
**
4074594 TTCAGCTTCAGC
1 TTCAGCTTTTGC
4074606 TTCAGCTT
1 TTCAGCTT
4074614 CAACCTTTCC
Statistics
Matches: 54, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
11 1 0.02
12 52 0.96
13 1 0.02
ACGTcount: A:0.06, C:0.26, G:0.20, T:0.47
Consensus pattern (12 bp):
TTCAGCTTTTGC
Found at i:4074837 original size:42 final size:42
Alignment explanation
Indices: 4074592--4074823 Score: 234
Period size: 42 Copynumber: 5.5 Consensus size: 42
4074582 TTCTGCTTTT
* * * * * *
4074592 GCTTCAGCTTCAGCTTCAGCTTCAACCTTT-CCTTCAGTTTTA
1 GCTTCAGCTTCAGCTTTAGCTTC-ATCTTTAGCTTTAGCTTGA
* * * * *
4074634 GCTTTAGCTTCAGCTTTGGCTTCA-CTTTTAGCCTCAGCTTTA
1 GCTTCAGCTTCAGCTTTAGCTTCATC-TTTAGCTTTAGCTTGA
* * *
4074676 GCTTCAGCTTCAGCTTTAGCTTCTTCTTTAGATTTAGCTTTA
1 GCTTCAGCTTCAGCTTTAGCTTCATCTTTAGCTTTAGCTTGA
* * *
4074718 GCTTCAGATTCAGCTTTAGCTTCATCTTTAACTTTAGCTTGT
1 GCTTCAGCTTCAGCTTTAGCTTCATCTTTAGCTTTAGCTTGA
* *
4074760 GCTTCATCTTCAGCTTTAACTTCATCTTTAGCTTTAGCTTGA
1 GCTTCAGCTTCAGCTTTAGCTTCATCTTTAGCTTTAGCTTGA
* * *
4074802 GGTTGAGTTTCAGCTTTAGCTT
1 GCTTCAGCTTCAGCTTTAGCTT
4074824 TAGCTTCATC
Statistics
Matches: 159, Mismatches: 28, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
40 1 0.01
41 4 0.03
42 153 0.96
43 1 0.01
ACGTcount: A:0.17, C:0.24, G:0.15, T:0.44
Consensus pattern (42 bp):
GCTTCAGCTTCAGCTTTAGCTTCATCTTTAGCTTTAGCTTGA
Found at i:4075094 original size:156 final size:156
Alignment explanation
Indices: 4074810--4075353 Score: 998
Period size: 156 Copynumber: 3.5 Consensus size: 156
4074800 GAGGTTGAGT
*
4074810 TTCAGCTTTAGCTTTAGCTTCATCTTTACCACTTGCATTTGTATTACCACTACCATCTCCTCCAC
1 TTCAGCTTTACCTTTAGCTTCATCTTTACCACTTGCATTTGTATTACCACTACCATCTCCTCCAC
* * * *
4074875 CTTGTCCTTTTACCCCACCGGAATCATTAAAGCTATCACTTTCACCACTATTTCCATCGACCTTT
66 CTTGTCCTTTTACCCCACCAGAATCATTAGAGCTGTCACTTCCACCACTATTTCCATCGACCTTT
*
4074940 CCTTGTCCTCCAAAATTTCCTTCAAC
131 CCCTGTCCTCCAAAATTTCCTTCAAC
*
4074966 TTCAGCTTTACCTTTAGCTTTATCTTTACCACTTGCATTTGTATTACCACTACCATCTCCTCCAC
1 TTCAGCTTTACCTTTAGCTTCATCTTTACCACTTGCATTTGTATTACCACTACCATCTCCTCCAC
4075031 CTTGTCCTTTTACCCCACCAGAATCATTAGAGCTGTCACTTCCACCACTATTTCCATCGACCTTT
66 CTTGTCCTTTTACCCCACCAGAATCATTAGAGCTGTCACTTCCACCACTATTTCCATCGACCTTT
*
4075096 CCCTGTCCTCCAAAATTTCCTTCAGC
131 CCCTGTCCTCCAAAATTTCCTTCAAC
*
4075122 TTCAGCTTTACCTTTAGCTTCATCTTTACCACTTGCATTTGTATTACCACTACCATATCCTCCAC
1 TTCAGCTTTACCTTTAGCTTCATCTTTACCACTTGCATTTGTATTACCACTACCATCTCCTCCAC
4075187 CTTGTCCTTTTACCCCACCAGAATCATTAGAGCTGTCACTTCCACCACTATTTCCATCGACCTTT
66 CTTGTCCTTTTACCCCACCAGAATCATTAGAGCTGTCACTTCCACCACTATTTCCATCGACCTTT
4075252 CCCTGTCCTCCAAAATTTCCTTCAAC
131 CCCTGTCCTCCAAAATTTCCTTCAAC
*
4075278 TTCAGCTTTACCTTTAGCTTTATCTTTACCACTTGCATTTGTATTACCACTACCATCTCCTCCAC
1 TTCAGCTTTACCTTTAGCTTCATCTTTACCACTTGCATTTGTATTACCACTACCATCTCCTCCAC
4075343 CTTGTCCTTTT
66 CTTGTCCTTTT
4075354 TCTTTATCAC
Statistics
Matches: 375, Mismatches: 13, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
156 375 1.00
ACGTcount: A:0.21, C:0.34, G:0.07, T:0.38
Consensus pattern (156 bp):
TTCAGCTTTACCTTTAGCTTCATCTTTACCACTTGCATTTGTATTACCACTACCATCTCCTCCAC
CTTGTCCTTTTACCCCACCAGAATCATTAGAGCTGTCACTTCCACCACTATTTCCATCGACCTTT
CCCTGTCCTCCAAAATTTCCTTCAAC
Found at i:4075140 original size:18 final size:18
Alignment explanation
Indices: 4075114--4075151 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
4075104 TCCAAAATTT
4075114 CCTTCAGCTTCAGCTTTA
1 CCTTCAGCTTCAGCTTTA
* *
4075132 CCTTTAGCTTCATCTTTA
1 CCTTCAGCTTCAGCTTTA
4075150 CC
1 CC
4075152 ACTTGCATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.16, C:0.34, G:0.08, T:0.42
Consensus pattern (18 bp):
CCTTCAGCTTCAGCTTTA
Found at i:4075369 original size:54 final size:53
Alignment explanation
Indices: 4075295--4075407 Score: 181
Period size: 54 Copynumber: 2.1 Consensus size: 53
4075285 TTACCTTTAG
* *
4075295 CTTTATCTTTACCACTTGCATTTGTATTACCACTACCATCTCCTCCACCTTGT
1 CTTTTTCTTTACCACTTGCATCTGTATTACCACTACCATCTCCTCCACCTTGT
* *
4075348 CCTTTTTCTTTATCACTTGCATCTGTATTACCACTACCATTTCCTCCACCTTGT
1 -CTTTTTCTTTACCACTTGCATCTGTATTACCACTACCATCTCCTCCACCTTGT
4075402 CTTTTT
1 CTTTTT
4075408 ACCCCACTAG
Statistics
Matches: 55, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
53 6 0.11
54 49 0.89
ACGTcount: A:0.17, C:0.33, G:0.05, T:0.45
Consensus pattern (53 bp):
CTTTTTCTTTACCACTTGCATCTGTATTACCACTACCATCTCCTCCACCTTGT
Found at i:4075502 original size:12 final size:12
Alignment explanation
Indices: 4075481--4075515 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
4075471 TCAAATTTTC
*
4075481 CTTCAACTTTAG
1 CTTCATCTTTAG
*
4075493 CTTTATCTTTAG
1 CTTCATCTTTAG
4075505 CTTCATCTTTA
1 CTTCATCTTTA
4075516 CCACTTGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.20, C:0.23, G:0.06, T:0.51
Consensus pattern (12 bp):
CTTCATCTTTAG
Found at i:4075515 original size:210 final size:210
Alignment explanation
Indices: 4075144--4076037 Score: 1331
Period size: 210 Copynumber: 4.3 Consensus size: 210
4075134 TTTAGCTTCA
* * *
4075144 TCTTTACCACTTGCATTTGTATTACCACTACCATATCCTCCACCTTGTCCTTTTACCCCACCAGA
1 TCTTTACCACTTGCATCTGTATTACCACTACCATCTCCTCCACCTTGTCCTTTTACCCCACTAGA
4075209 ATCATTAGAGCTGTCACTTCCACCACTATTTCCATCGACCTTTCCCTGTCCTCCAAAATTTCCTT
66 ATCATTAGAGCTGTCACTTCCACCACTATTTCCATCGACCTTTCCCTGTCCTCCAAAATTTCCTT
* *
4075274 CAACTTCAGCTTTACCTTTAGCTTTATCTTTACCACTTGCATTTGTATTACCACTACCATCTCCT
131 CAACTTCAGCTTTATCTTTAGCTTCATCTTTACCACTTGCATTTGTATTACCACTACCATCTCCT
4075339 CCACCTTGTCCTTTT
196 CCACCTTGTCCTTTT
* * *
4075354 TCTTTATCACTTGCATCTGTATTACCACTACCATTTCCTCCACCTTGTCTTTTTACCCCACTAGA
1 TCTTTACCACTTGCATCTGTATTACCACTACCATCTCCTCCACCTTGTCCTTTTACCCCACTAGA
* * * * * *
4075419 ATCATTAGAACTATCACTTCCACCACTATTTCCATCGACCTTTCCTTGCCCTTCAAATTTTCCTT
66 ATCATTAGAGCTGTCACTTCCACCACTATTTCCATCGACCTTTCCCTGTCCTCCAAAATTTCCTT
* * *
4075484 CAACTTTAGCTTTATCTTTAGCTTCATCTTTACCACTTGTATTTGTATTACCACTACTATCTCCT
131 CAACTTCAGCTTTATCTTTAGCTTCATCTTTACCACTTGCATTTGTATTACCACTACCATCTCCT
4075549 CCACCTTGTCCTTTT
196 CCACCTTGTCCTTTT
* * * * * *
4075564 TGTTTACCACTTGTATCTGTATCACCACTACCATCTCCTCCACCTTGCCCTTTTACCTCAAC-GG
1 TCTTTACCACTTGCATCTGTATTACCACTACCATCTCCTCCACCTTGTCCTTTTACC-CCACTAG
* * * * *
4075628 AATTATTAGATCTGTCATTTCCACCACTATTTTCATCGACCTTTCCCTGTCCTCCAAATTTTCCT
65 AATCATTAGAGCTGTCACTTCCACCACTATTTCCATCGACCTTTCCCTGTCCTCCAAAATTTCCT
* * * * *
4075693 TCAACTTCAGCTTTATTTTTAGCTTCATATTTACCACTTGCATTTTTATTATCACTACCATCTCT
130 TCAACTTCAGCTTTATCTTTAGCTTCATCTTTACCACTTGCATTTGTATTACCACTACCATCTCC
**
4075758 TCCACCAGGTCCTTTT
195 TCCACCTTGTCCTTTT
4075774 TCTTTACCACTTGCATCTGTATTACCACTACCATCTCCTCCACCTTGTCCTTTTACCCCACTAGA
1 TCTTTACCACTTGCATCTGTATTACCACTACCATCTCCTCCACCTTGTCCTTTTACCCCACTAGA
* * *
4075839 ATCACTAGAGCTGTCACTTCCACCACTATTTTCATCGACCTTTCCCTGTCCTCCAAAATTTCCTC
66 ATCATTAGAGCTGTCACTTCCACCACTATTTCCATCGACCTTTCCCTGTCCTCCAAAATTTCCTT
* * * * *
4075904 CAGCTTTAGCTTTAACTTTAGCTTCATCTTTACCACTTGCATCTATATTACCACTACCATCTCCT
131 CAACTTCAGCTTTATCTTTAGCTTCATCTTTACCACTTGCATTTGTATTACCACTACCATCTCCT
* *
4075969 CTACCTTTTCCTTTT
196 CCACCTTGTCCTTTT
* * * *
4075984 TCTCTACCACTTGCATCTATATTACCACTACCATCTCCTCTACCCTGTCCTTTT
1 TCTTTACCACTTGCATCTGTATTACCACTACCATCTCCTCCACCTTGTCCTTTT
4076038 TCTTTACCAC
Statistics
Matches: 610, Mismatches: 72, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
209 3 0.00
210 604 0.99
211 3 0.00
ACGTcount: A:0.20, C:0.34, G:0.06, T:0.40
Consensus pattern (210 bp):
TCTTTACCACTTGCATCTGTATTACCACTACCATCTCCTCCACCTTGTCCTTTTACCCCACTAGA
ATCATTAGAGCTGTCACTTCCACCACTATTTCCATCGACCTTTCCCTGTCCTCCAAAATTTCCTT
CAACTTCAGCTTTATCTTTAGCTTCATCTTTACCACTTGCATTTGTATTACCACTACCATCTCCT
CCACCTTGTCCTTTT
Found at i:4075594 original size:54 final size:54
Alignment explanation
Indices: 4075512--4075617 Score: 176
Period size: 54 Copynumber: 2.0 Consensus size: 54
4075502 TAGCTTCATC
* * * *
4075512 TTTACCACTTGTATTTGTATTACCACTACTATCTCCTCCACCTTGTCCTTTTTG
1 TTTACCACTTGTATCTGTATCACCACTACCATCTCCTCCACCTTGCCCTTTTTG
4075566 TTTACCACTTGTATCTGTATCACCACTACCATCTCCTCCACCTTGCCCTTTT
1 TTTACCACTTGTATCTGTATCACCACTACCATCTCCTCCACCTTGCCCTTTT
4075618 ACCTCAACGG
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 48 1.00
ACGTcount: A:0.17, C:0.34, G:0.07, T:0.42
Consensus pattern (54 bp):
TTTACCACTTGTATCTGTATCACCACTACCATCTCCTCCACCTTGCCCTTTTTG
Found at i:4075786 original size:54 final size:54
Alignment explanation
Indices: 4075722--4075827 Score: 158
Period size: 54 Copynumber: 2.0 Consensus size: 54
4075712 TAGCTTCATA
* * * *
4075722 TTTACCACTTGCATTTTTATTATCACTACCATCTCTTCCACCAGGTCCTTTTTC
1 TTTACCACTTGCATCTGTATTACCACTACCATCTCCTCCACCAGGTCCTTTTTC
**
4075776 TTTACCACTTGCATCTGTATTACCACTACCATCTCCTCCACCTTGTCCTTTT
1 TTTACCACTTGCATCTGTATTACCACTACCATCTCCTCCACCAGGTCCTTTT
4075828 ACCCCACTAG
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 46 1.00
ACGTcount: A:0.18, C:0.34, G:0.06, T:0.42
Consensus pattern (54 bp):
TTTACCACTTGCATCTGTATTACCACTACCATCTCCTCCACCAGGTCCTTTTTC
Found at i:4076016 original size:54 final size:54
Alignment explanation
Indices: 4075934--4076091 Score: 244
Period size: 54 Copynumber: 2.9 Consensus size: 54
4075924 GCTTCATCTT
*
4075934 TACCACTTGCATCTATATTACCACTACCATCTCCTCTACCTTTTCCTTTTTCTC
1 TACCACTTGCATCTATATTACCACTACCATCTCCTCTACCTTGTCCTTTTTCTC
* *
4075988 TACCACTTGCATCTATATTACCACTACCATCTCCTCTACCCTGTCCTTTTTCTT
1 TACCACTTGCATCTATATTACCACTACCATCTCCTCTACCTTGTCCTTTTTCTC
* * * * *
4076042 TACCACTGGCATTTGTATTACCACTACCATCTCTTCCACCTTGTCCTTTT
1 TACCACTTGCATCTATATTACCACTACCATCTCCTCTACCTTGTCCTTTT
4076092 ACCCCATCAT
Statistics
Matches: 95, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 95 1.00
ACGTcount: A:0.18, C:0.36, G:0.04, T:0.41
Consensus pattern (54 bp):
TACCACTTGCATCTATATTACCACTACCATCTCCTCTACCTTGTCCTTTTTCTC
Found at i:4076038 original size:264 final size:258
Alignment explanation
Indices: 4075724--4076241 Score: 786
Period size: 264 Copynumber: 2.0 Consensus size: 258
4075714 GCTTCATATT
* * * * *
4075724 TACCACTTGCATTTTTATTATCACTACCATCTCTTCCACCAGGTCCTTTTTCTTTACCACTTGCA
1 TACCACTTGCATCTATATTACCACTACCATCTCCTCCACCAGGTCCTTTTTCTTTACCACTGGCA
* *
4075789 TCTGTATTACCACTACCATCTCCTCCACCTTGTCCTTTTACCCCA-CTAGAATCACTAGAGCTGT
66 TCTGTATTACCACTACCATCTCCTCCACCTTGTCCTTTTACCCCATC-AGAATAACTAGAGCTAT
* *
4075853 CACTTCCACCACTATTTTCATCGACCTTTCCCTGTCCTCCAAAATTTCCTCCAGCTTTAGCTTTA
130 CACTTCCACCACTATTTCCATCGACCTTTCCCTGTCCTCC-AAATTT--T-C--CTTCAGCTTTA
* *
4075918 ACTTTAGCTTCATCTTTACCACTTGCATCTATATTACCACTACCATCTCCTCTACCTTTTCCTTT
189 ACTTTAGCTTCATCTTTACCACTTGCATCTATATTACCACTACCATCTCCTCCACCTTGTCCTTT
4075983 TTCTC
254 TTCTC
* **
4075988 TACCACTTGCATCTATATTACCACTACCATCTCCTCTACCCTGTCCTTTTTCTTTACCACTGGCA
1 TACCACTTGCATCTATATTACCACTACCATCTCCTCCACCAGGTCCTTTTTCTTTACCACTGGCA
* * *
4076053 TTTGTATTACCACTACCATCTCTTCCACCTTGTCCTTTTACCCCATCATAATAACTAGAGCTATC
66 TCTGTATTACCACTACCATCTCCTCCACCTTGTCCTTTTACCCCATCAGAATAACTAGAGCTATC
* *
4076118 ACTTCCACCACTATTTCCATCGACCTTTCCCTGTCCTCCAAATTTTCCTTCAGTTTTAGCTTTAG
131 ACTTCCACCACTATTTCCATCGACCTTTCCCTGTCCTCCAAATTTTCCTTCAGCTTTAACTTTAG
*
4076183 CTTCATCTTTACCACTTGCGTCTATATTACCACTACCATCTCCTCCACCTTGTCCTTTT
196 CTTCATCTTTACCACTTGCATCTATATTACCACTACCATCTCCTCCACCTTGTCCTTTT
4076242 ACCCCACTAG
Statistics
Matches: 233, Mismatches: 20, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
258 71 0.30
260 1 0.00
261 1 0.00
263 6 0.03
264 153 0.66
265 1 0.00
ACGTcount: A:0.20, C:0.35, G:0.06, T:0.39
Consensus pattern (258 bp):
TACCACTTGCATCTATATTACCACTACCATCTCCTCCACCAGGTCCTTTTTCTTTACCACTGGCA
TCTGTATTACCACTACCATCTCCTCCACCTTGTCCTTTTACCCCATCAGAATAACTAGAGCTATC
ACTTCCACCACTATTTCCATCGACCTTTCCCTGTCCTCCAAATTTTCCTTCAGCTTTAACTTTAG
CTTCATCTTTACCACTTGCATCTATATTACCACTACCATCTCCTCCACCTTGTCCTTTTTCTC
Found at i:4078186 original size:45 final size:45
Alignment explanation
Indices: 4078122--4078212 Score: 182
Period size: 45 Copynumber: 2.0 Consensus size: 45
4078112 GATCTGTCAC
4078122 GAATTACACTATTATTTACATCCTTTTTTCACATAATTTTAGTTT
1 GAATTACACTATTATTTACATCCTTTTTTCACATAATTTTAGTTT
4078167 GAATTACACTATTATTTACATCCTTTTTTCACATAATTTTAGTTT
1 GAATTACACTATTATTTACATCCTTTTTTCACATAATTTTAGTTT
4078212 G
1 G
4078213 TTTAGTAGTT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.29, C:0.15, G:0.05, T:0.51
Consensus pattern (45 bp):
GAATTACACTATTATTTACATCCTTTTTTCACATAATTTTAGTTT
Found at i:4081819 original size:16 final size:17
Alignment explanation
Indices: 4081792--4081826 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
4081782 TAGAAGATGG
*
4081792 TTGAGAAAATTACTTAA
1 TTGAGAAAATTAATTAA
4081809 TTGAG-AAATTAATTAA
1 TTGAGAAAATTAATTAA
4081825 TT
1 TT
4081827 AAATTAAACG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.46, C:0.03, G:0.11, T:0.40
Consensus pattern (17 bp):
TTGAGAAAATTAATTAA
Found at i:4085302 original size:43 final size:43
Alignment explanation
Indices: 4085254--4085557 Score: 371
Period size: 43 Copynumber: 7.1 Consensus size: 43
4085244 AGAAATAAAC
* *
4085254 GACCTTTAGCGGCACTTATACCACAAACGCCACTAAAGACCAT
1 GACCTTTAGCGGCGCTTATACCACAAACGCCGCTAAAGACCAT
* *
4085297 GACCTTTAGCTGCGCTTATACCACAAACGCCACTAAAGACCAT
1 GACCTTTAGCGGCGCTTATACCACAAACGCCGCTAAAGACCAT
* *
4085340 GACCTTTAGCGGCGCTT-TTCCTACAAACGCCGCTAAATACCAT
1 GACCTTTAGCGGCGCTTATACC-ACAAACGCCGCTAAAGACCAT
* * *
4085383 GACCTTTAGCGGCGCTT-TTCCTACAAATGTCGCTAAAGACCAT
1 GACCTTTAGCGGCGCTTATACC-ACAAACGCCGCTAAAGACCAT
* * *
4085426 GACTTTTAAG-GGCGCTTATCCCACAAACGCCGCTATAGACCAT
1 GACCTTT-AGCGGCGCTTATACCACAAACGCCGCTAAAGACCAT
* * *
4085469 GACCTTTAGCGGTGCTTTTCCCACAAACGCCGCTAAAGACCAT
1 GACCTTTAGCGGCGCTTATACCACAAACGCCGCTAAAGACCAT
* * *** *
4085512 GACCTTTAGCGGAGCTTTTTTTACAAATGCCGCTAAAGACCAT
1 GACCTTTAGCGGCGCTTATACCACAAACGCCGCTAAAGACCAT
4085555 GAC
1 GAC
4085558 TTTTTGTGGC
Statistics
Matches: 234, Mismatches: 23, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
42 5 0.02
43 224 0.96
44 5 0.02
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.24
Consensus pattern (43 bp):
GACCTTTAGCGGCGCTTATACCACAAACGCCGCTAAAGACCAT
Found at i:4085558 original size:129 final size:129
Alignment explanation
Indices: 4085254--4085561 Score: 433
Period size: 129 Copynumber: 2.4 Consensus size: 129
4085244 AGAAATAAAC
* * * * *
4085254 GACCTTTAGCGGCA-CTTATACC-ACAAACGCCACTAAAGACCATGACCTTTAGCTGCGCTTATA
1 GACCTTTAGCGG-AGCTT-TTCCTACAAATGCCGCTAAAGACCATGACTTTTAGCGGCGCTTATA
* *
4085317 CCACAAACGCCACTAAAGACCATGACCTTTAGCGGCGCTTTTCCTACAAACGCCGCTAAATACCA
64 CCACAAACGCCACTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCA
4085382 T
129 T
* * *
4085383 GACCTTTAGCGGCGCTTTTCCTACAAATGTCGCTAAAGACCATGACTTTTAAG-GGCGCTTATCC
1 GACCTTTAGCGGAGCTTTTCCTACAAATGCCGCTAAAGACCATGACTTTT-AGCGGCGCTTATAC
* * *
4085447 CACAAACGCCGCTATAGACCATGACCTTTAGCGGTGCTTTTCCCACAAACGCCGCTAAAGACCAT
65 CACAAACGCCACTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAT
**
4085512 GACCTTTAGCGGAGCTTTTTTTACAAATGCCGCTAAAGACCATGACTTTT
1 GACCTTTAGCGGAGCTTTTCCTACAAATGCCGCTAAAGACCATGACTTTT
4085562 TGTGGCATTT
Statistics
Matches: 159, Mismatches: 17, Indels: 6
0.87 0.09 0.03
Matches are distributed among these distances:
128 3 0.02
129 154 0.97
130 2 0.01
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (129 bp):
GACCTTTAGCGGAGCTTTTCCTACAAATGCCGCTAAAGACCATGACTTTTAGCGGCGCTTATACC
ACAAACGCCACTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAT
Found at i:4085791 original size:19 final size:19
Alignment explanation
Indices: 4085767--4085804 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
4085757 TACAAAAATG
4085767 TTAAAAGTT-AAAATGATAA
1 TTAAAA-TTCAAAATGATAA
4085786 TTAAAATTCAAAATGATAA
1 TTAAAATTCAAAATGATAA
4085805 AAATATTTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 2 0.11
19 16 0.89
ACGTcount: A:0.58, C:0.03, G:0.08, T:0.32
Consensus pattern (19 bp):
TTAAAATTCAAAATGATAA
Found at i:4085991 original size:66 final size:66
Alignment explanation
Indices: 4085921--4086045 Score: 164
Period size: 66 Copynumber: 1.9 Consensus size: 66
4085911 CTCGTTGTCG
* *
4085921 CATCTGCTTTAAGCTGCAAG-TGGAGTTCTTCATA-CTTTCGTTGAACATCAGCTTCTCTCATTG
1 CATCTGCTTTAAGCTG-AAGCTAGAGTTCTTCATATCTTT-GTTCAACATCAGCTTCTCTCATTG
4085984 CTA
64 CTA
* * * *
4085987 CATCTGCTTTAAGTTGTAGCTAGAGTTCTTCATATCTTTTTTCAACCTCAGCTTCTCTC
1 CATCTGCTTTAAGCTGAAGCTAGAGTTCTTCATATCTTTGTTCAACATCAGCTTCTCTC
4086046 GATGCTGCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
65 2 0.04
66 45 0.88
67 4 0.08
ACGTcount: A:0.20, C:0.25, G:0.14, T:0.41
Consensus pattern (66 bp):
CATCTGCTTTAAGCTGAAGCTAGAGTTCTTCATATCTTTGTTCAACATCAGCTTCTCTCATTGCT
A
Found at i:4086062 original size:66 final size:66
Alignment explanation
Indices: 4085943--4086069 Score: 168
Period size: 66 Copynumber: 1.9 Consensus size: 66
4085933 GCTGCAAGTG
* *
4085943 GAGTTCTTCATACTTTCGTTGAACATCAGCTTCTCTCATTGCTACATCTGCTTTAAGTTGTAGCT
1 GAGTTCTTCATACTTTCGTTCAACATCAGCTTCTCTCATTGCTACATCCGCTTTAAGTTGTAGCT
4086008 A
66 A
* * * *
4086009 GAGTTCTTCATATCTTT-TTTCAACCTCAGCTTCTCTCGA-TGCTGCCTCCGCTTTAAGTTGT
1 GAGTTCTTCATA-CTTTCGTTCAACATCAGCTTCTCTC-ATTGCTACATCCGCTTTAAGTTGT
4086070 GTAATTTGCT
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
66 48 0.91
67 5 0.09
ACGTcount: A:0.18, C:0.25, G:0.15, T:0.42
Consensus pattern (66 bp):
GAGTTCTTCATACTTTCGTTCAACATCAGCTTCTCTCATTGCTACATCCGCTTTAAGTTGTAGCT
A
Found at i:4087693 original size:10 final size:10
Alignment explanation
Indices: 4087678--4087702 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
4087668 AAAATAGTTG
4087678 AAATATAATT
1 AAATATAATT
4087688 AAATATAATT
1 AAATATAATT
4087698 AAATA
1 AAATA
4087703 ATCGTAAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (10 bp):
AAATATAATT
Found at i:4091520 original size:25 final size:25
Alignment explanation
Indices: 4091489--4091570 Score: 112
Period size: 25 Copynumber: 3.3 Consensus size: 25
4091479 TGATATATAT
*
4091489 TTATGTATTAAGTAAATTATGTAAG
1 TTATGTATTAAGTAAGTTATGTAAG
*
4091514 TTATGTATTATA-TAAGTTATTTAAG
1 TTATGTATTA-AGTAAGTTATGTAAG
* *
4091539 TTATGTATTATGTAAGCTATGTAAG
1 TTATGTATTAAGTAAGTTATGTAAG
4091564 TTATGTA
1 TTATGTA
4091571 AGTGTTGTAT
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
25 49 0.98
26 1 0.02
ACGTcount: A:0.35, C:0.01, G:0.16, T:0.48
Consensus pattern (25 bp):
TTATGTATTAAGTAAGTTATGTAAG
Found at i:4091564 original size:34 final size:34
Alignment explanation
Indices: 4091514--4091895 Score: 221
Period size: 34 Copynumber: 11.8 Consensus size: 34
4091504 ATTATGTAAG
* *
4091514 TTATGT-A-TTATATAAGTTATTTAAGT-TATGTA
1 TTATGTAAGTTATGTAAGTTATGTAAGTGT-TGTA
*
4091546 TTATGTAAGCTATGTAAGTTATGTAAGTGTTGTA
1 TTATGTAAGTTATGTAAGTTATGTAAGTGTTGTA
* *
4091580 TCATGTAAGTTATATAAGTTATGT-AG-GCTATGTA
1 TTATGTAAGTTATGTAAGTTATGTAAGTG-T-TGTA
* * *
4091614 TTATGCAAGTTATTTAAGTTGTGTAAGTGTTGTA
1 TTATGTAAGTTATGTAAGTTATGTAAGTGTTGTA
*
4091648 TTATGTAAGTTATGT-A-TTATATAA--G-T-T-
1 TTATGTAAGTTATGTAAGTTATGTAAGTGTTGTA
**
4091675 TTATGTAAAATATGTAAG-T-TGT-A----T-T-
1 TTATGTAAGTTATGTAAGTTATGTAAGTGTTGTA
* * *
4091700 TTGTGAAAGTTATATAAGTTATGT-AG-GCTATGTA
1 TTATGTAAGTTATGTAAGTTATGTAAGTG-T-TGTA
* * *
4091734 TTATGCAAGTTATTTAAGTTGTGTAAGTGTTGTA
1 TTATGTAAGTTATGTAAGTTATGTAAGTGTTGTA
*
4091768 TTATGTAAGTTATGT-A-TTATGTAAGAT-ATGTAA
1 TTATGTAAGTTATGTAAGTTATGTAAG-TGTTGT-A
* ** * * *
4091801 GT-TGTATTTTATGTAAGTTCTGTATTA-TGTATATG
1 TTATGTAAGTTATGTAAGTTATGTA--AGTGT-TGTA
* * *
4091836 TTATGTAAGTTGTGT-AG-AATGTAAGTGGTGTA
1 TTATGTAAGTTATGTAAGTTATGTAAGTGTTGTA
4091868 TTATGTAAGTTATGTAAGTTATGTAAGT
1 TTATGTAAGTTATGTAAGTTATGTAAGT
4091896 TATTATGTAA
Statistics
Matches: 270, Mismatches: 48, Indels: 62
0.71 0.13 0.16
Matches are distributed among these distances:
25 15 0.06
26 2 0.01
27 19 0.07
28 3 0.01
29 1 0.00
30 1 0.00
32 52 0.19
33 15 0.06
34 138 0.51
35 10 0.04
36 14 0.05
ACGTcount: A:0.31, C:0.02, G:0.21, T:0.47
Consensus pattern (34 bp):
TTATGTAAGTTATGTAAGTTATGTAAGTGTTGTA
Found at i:4091726 original size:120 final size:117
Alignment explanation
Indices: 4091530--4091800 Score: 418
Period size: 120 Copynumber: 2.3 Consensus size: 117
4091520 ATTATATAAG
* **
4091530 TTATTTAAGTTATGTATTATGTAAGCTATGTAAGTTATGTAAGTGTTGTATCATGTAAGTTATAT
1 TTATGTAAGTTATGTATTATGTAAGCTATGTAAAATATGTAAG-GTTGTATCATGTAAGTTATAT
4091595 AAGTTATGTAGGCTATGTATTATGCAAGTTATTTAAGTTGTGTAAGTGTTGTA
65 AAGTTATGTAGGCTATGTATTATGCAAGTTATTTAAGTTGTGTAAGTGTTGTA
* * **
4091648 TTATGTAAGTTATGTATTATATAAGTTTTATGTAAAATATGTAA-GTTGTATTTTGTGAAAGTTA
1 TTATGTAAGTTATGTATTATGTAAG--CTATGTAAAATATGTAAGGTTGTATCATGT--AAGTTA
4091712 TATAAGTTATGTAGGCTATGTATTATGCAAGTTATTTAAGTTGTGTAAGTGTTGTA
62 TATAAGTTATGTAGGCTATGTATTATGCAAGTTATTTAAGTTGTGTAAGTGTTGTA
*
4091768 TTATGTAAGTTATGTATTATGTAAGATATGTAA
1 TTATGTAAGTTATGTATTATGTAAGCTATGTAA
4091801 GTTGTATTTT
Statistics
Matches: 140, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
118 40 0.29
120 100 0.71
ACGTcount: A:0.31, C:0.02, G:0.20, T:0.46
Consensus pattern (117 bp):
TTATGTAAGTTATGTATTATGTAAGCTATGTAAAATATGTAAGGTTGTATCATGTAAGTTATATA
AGTTATGTAGGCTATGTATTATGCAAGTTATTTAAGTTGTGTAAGTGTTGTA
Found at i:4091797 original size:25 final size:24
Alignment explanation
Indices: 4091769--4091898 Score: 78
Period size: 25 Copynumber: 5.5 Consensus size: 24
4091759 AGTGTTGTAT
4091769 TATGTAAGTTATGTATTATGTAAG
1 TATGTAAGTTATGTATTATGTAAG
* * *
4091793 ATATGTAAGTTGTATTTTATGTAAG
1 -TATGTAAGTTATGTATTATGTAAG
*
4091818 TTCTGT-A-TTATGTA-TATGT---
1 -TATGTAAGTTATGTATTATGTAAG
* **
4091837 TATGTAAGTTGTGTAGAATGTAAG
1 TATGTAAGTTATGTATTATGTAAG
*
4091861 TGGTGT-A-TTATGTAAGTTATGTAAG
1 T-ATGTAAGTTATGT-A-TTATGTAAG
4091886 TTATGTAAGTTAT
1 -TATGTAAGTTAT
4091899 TATGTAAGTA
Statistics
Matches: 77, Mismatches: 16, Indels: 22
0.67 0.14 0.19
Matches are distributed among these distances:
18 4 0.05
19 1 0.01
20 6 0.08
21 4 0.05
22 5 0.06
23 9 0.12
24 4 0.05
25 38 0.49
26 2 0.03
27 4 0.05
ACGTcount: A:0.30, C:0.01, G:0.22, T:0.47
Consensus pattern (24 bp):
TATGTAAGTTATGTATTATGTAAG
Found at i:4091903 original size:12 final size:12
Alignment explanation
Indices: 4091886--4092038 Score: 65
Period size: 12 Copynumber: 14.1 Consensus size: 12
4091876 GTTATGTAAG
4091886 TTATGTAAGTTA
1 TTATGTAAGTTA
4091898 TTATGTAAG-TA
1 TTATGTAAGTTA
* *
4091909 --ATGCAATCTTA
1 TTATGTAA-GTTA
*
4091920 -TATATAAGTTA
1 TTATGTAAGTTA
*
4091931 TGTAT-TATGTTA
1 T-TATGTAAGTTA
4091943 TTA--T--GT-A
1 TTATGTAAGTTA
*
4091950 TTATGTAATTTA
1 TTATGTAAGTTA
*
4091962 TTATGTTA-TTA
1 TTATGTAAGTTA
*
4091973 -TATATAAG---
1 TTATGTAAGTTA
4091981 TTATGTAAGTTA
1 TTATGTAAGTTA
4091993 TTATGTAAG---
1 TTATGTAAGTTA
*
4092002 TTATGCAAGCTTA
1 TTATGTAAG-TTA
*
4092015 -TATATAAGTTA
1 TTATGTAAGTTA
4092026 TTATGTAAGTTA
1 TTATGTAAGTTA
4092038 T
1 T
4092039 GAGTTTATAA
Statistics
Matches: 106, Mismatches: 15, Indels: 40
0.66 0.09 0.25
Matches are distributed among these distances:
7 4 0.04
8 2 0.02
9 21 0.20
10 6 0.06
11 16 0.15
12 54 0.51
13 3 0.03
ACGTcount: A:0.35, C:0.03, G:0.14, T:0.49
Consensus pattern (12 bp):
TTATGTAAGTTA
Found at i:4091931 original size:42 final size:42
Alignment explanation
Indices: 4091882--4092026 Score: 146
Period size: 42 Copynumber: 3.2 Consensus size: 42
4091872 GTAAGTTATG
4091882 TAAGTTATGTAAGTTATTATGTAAGTAATGCAATCTTATATA
1 TAAGTTATGTAAGTTATTATGTAAGTAATGCAATCTTATATA
** *
4091924 TAAGTTATGTATTATGTTATTATGTATTATGTAATTTATTATGTTATTATATA
1 TAAGTTATGTA--A-GTTATTATGTA--A-GTAATGCA--A---TCTTATATA
* *
4091977 TAAGTTATGTAAGTTATTATGTAAGTTATGCAAGCTTATATA
1 TAAGTTATGTAAGTTATTATGTAAGTAATGCAATCTTATATA
4092019 TAAGTTAT
1 TAAGTTAT
4092027 TATGTAAGTT
Statistics
Matches: 84, Mismatches: 8, Indels: 22
0.74 0.07 0.19
Matches are distributed among these distances:
42 26 0.31
44 1 0.01
45 12 0.14
47 6 0.07
48 7 0.08
50 12 0.14
51 1 0.01
53 19 0.23
ACGTcount: A:0.35, C:0.03, G:0.14, T:0.48
Consensus pattern (42 bp):
TAAGTTATGTAAGTTATTATGTAAGTAATGCAATCTTATATA
Found at i:4091946 original size:8 final size:7
Alignment explanation
Indices: 4091928--4091973 Score: 51
Period size: 7 Copynumber: 6.6 Consensus size: 7
4091918 TATATATAAG
4091928 TTATGTA
1 TTATGTA
4091935 TTATGTTA
1 TTATG-TA
4091943 TTATGTA
1 TTATGTA
4091950 TTATGTA
1 TTATGTA
*
4091957 --ATTTA
1 TTATGTA
4091962 TTATGTTA
1 TTATG-TA
4091970 TTAT
1 TTAT
4091974 ATATAAGTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
5 4 0.12
7 16 0.48
8 13 0.39
ACGTcount: A:0.28, C:0.00, G:0.11, T:0.61
Consensus pattern (7 bp):
TTATGTA
Found at i:4091948 original size:15 final size:15
Alignment explanation
Indices: 4091928--4091973 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
4091918 TATATATAAG
4091928 TTATGTATTATGTTA
1 TTATGTATTATGTTA
4091943 TTATGTATTATG-TA
1 TTATGTATTATGTTA
*
4091957 --ATTTATTATGTTA
1 TTATGTATTATGTTA
4091970 TTAT
1 TTAT
4091974 ATATAAGTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
12 9 0.33
13 2 0.07
14 2 0.07
15 14 0.52
ACGTcount: A:0.28, C:0.00, G:0.11, T:0.61
Consensus pattern (15 bp):
TTATGTATTATGTTA
Found at i:4092006 original size:9 final size:9
Alignment explanation
Indices: 4091460--4091898 Score: 235
Period size: 9 Copynumber: 51.7 Consensus size: 9
4091450 AAATTAAATG
4091460 AGTTATGTA
1 AGTTATGTA
4091469 AGTTATGATA
1 AGTTATG-TA
* * *
4091479 TGATATAT-
1 AGTTATGTA
*
4091487 ATTTATGT-
1 AGTTATGTA
*
4091495 A-TTAAGTA
1 AGTTATGTA
*
4091503 AATTATGTA
1 AGTTATGTA
4091512 AGTTATGT-
1 AGTTATGTA
*
4091520 A-TTATATA
1 AGTTATGTA
*
4091528 AGTTATTTA
1 AGTTATGTA
4091537 AGTTATGT-
1 AGTTATGTA
4091545 A-TTATGTA
1 AGTTATGTA
*
4091553 AGCTATGTA
1 AGTTATGTA
4091562 AGTTATGTA
1 AGTTATGTA
4091571 AGTGT-TGT-
1 AGT-TATGTA
*
4091579 A-TCATGTA
1 AGTTATGTA
*
4091587 AGTTATATA
1 AGTTATGTA
4091596 AGTTATGTA
1 AGTTATGTA
* *
4091605 GGCTATGT-
1 AGTTATGTA
*
4091613 A-TTATGCA
1 AGTTATGTA
*
4091621 AGTTATTTA
1 AGTTATGTA
*
4091630 AGTTGTGTA
1 AGTTATGTA
4091639 AGTGT-TGT-
1 AGT-TATGTA
4091647 A-TTATGTA
1 AGTTATGTA
4091655 AGTTATGT-
1 AGTTATGTA
*
4091663 A-TTATATA
1 AGTTATGTA
4091671 AGTTTTATGTA
1 AG--TTATGTA
**
4091682 AAATATGTA
1 AGTTATGTA
4091691 AG-T-TGTA
1 AGTTATGTA
** * *
4091698 TTTTGTGAA
1 AGTTATGTA
*
4091707 AGTTATATA
1 AGTTATGTA
4091716 AGTTATGTA
1 AGTTATGTA
* *
4091725 GGCTATGT-
1 AGTTATGTA
*
4091733 A-TTATGCA
1 AGTTATGTA
*
4091741 AGTTATTTA
1 AGTTATGTA
*
4091750 AGTTGTGTA
1 AGTTATGTA
4091759 AGTGT-TGT-
1 AGT-TATGTA
4091767 A-TTATGTA
1 AGTTATGTA
4091775 AGTTATGT-
1 AGTTATGTA
4091783 A-TTATGTA
1 AGTTATGTA
*
4091791 AGATATGTA
1 AGTTATGTA
4091800 AG-T-TGTA
1 AGTTATGTA
**
4091807 TTTTATGTA
1 AGTTATGTA
*
4091816 AGTTCTGT-
1 AGTTATGTA
4091824 A-TTATGTA
1 AGTTATGTA
4091832 TATGTTATGTA
1 -A-GTTATGTA
*
4091843 AGTTGTGT-
1 AGTTATGTA
*
4091851 AG-AATGTA
1 AGTTATGTA
**
4091859 AGTGGTGT-
1 AGTTATGTA
4091867 A-TTATGTA
1 AGTTATGTA
4091875 AGTTATGTA
1 AGTTATGTA
4091884 AGTTATGTA
1 AGTTATGTA
4091893 AGTTAT
1 AGTTAT
4091899 TATGTAAGTA
Statistics
Matches: 324, Mismatches: 65, Indels: 82
0.69 0.14 0.17
Matches are distributed among these distances:
6 2 0.01
7 67 0.21
8 33 0.10
9 198 0.61
10 10 0.03
11 14 0.04
ACGTcount: A:0.32, C:0.02, G:0.20, T:0.46
Consensus pattern (9 bp):
AGTTATGTA
Found at i:4092068 original size:95 final size:95
Alignment explanation
Indices: 4091882--4092054 Score: 253
Period size: 95 Copynumber: 1.8 Consensus size: 95
4091872 GTAAGTTATG
* * *
4091882 TAAGTTATGTAAGTTATTATGTAAGTAATGCAATCTTATATATAAGTTATGTATTATGTTATTAT
1 TAAGTTATGTAAGTTATTATGTAAGTAATGCAAGCTTATATATAAGTTATGTATTAAGTTATGAT
**
4091947 GTATTATGTAATTTATTATGTTATTATATA
66 GTATTATACAATTTATTATGTTATTATATA
*
4091977 TAAGTTATGTAAGTTATTATGTAAGTTATGCAAGCTTATATATAAGTTAT-TATGTAAGTTATGA
1 TAAGTTATGTAAGTTATTATGTAAGTAATGCAAGCTTATATATAAGTTATGTAT-TAAGTTATGA
4092041 -GT-TTATAACAATTT
65 TGTATTAT-ACAATTT
4092055 TTTTTTTGTA
Statistics
Matches: 70, Mismatches: 6, Indels: 5
0.86 0.07 0.06
Matches are distributed among these distances:
93 4 0.06
94 10 0.14
95 56 0.80
ACGTcount: A:0.35, C:0.03, G:0.14, T:0.48
Consensus pattern (95 bp):
TAAGTTATGTAAGTTATTATGTAAGTAATGCAAGCTTATATATAAGTTATGTATTAAGTTATGAT
GTATTATACAATTTATTATGTTATTATATA
Found at i:4092309 original size:45 final size:45
Alignment explanation
Indices: 4092237--4092336 Score: 164
Period size: 45 Copynumber: 2.2 Consensus size: 45
4092227 ATTAATACTA
* * *
4092237 ATAAATTTTATTATTAATAAATTTAGAACACTTATTTAGAAAACTT
1 ATAAA-TTTAATACTAATAAATTTAGAAAACTTATTTAGAAAACTT
4092283 ATAAATTTAATACTAATAAATTTAGAAAACTTATTTAGAAAACTT
1 ATAAATTTAATACTAATAAATTTAGAAAACTTATTTAGAAAACTT
4092328 ATAAATTTA
1 ATAAATTTA
4092337 GAAAACTTAT
Statistics
Matches: 51, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
45 46 0.90
46 5 0.10
ACGTcount: A:0.49, C:0.06, G:0.04, T:0.41
Consensus pattern (45 bp):
ATAAATTTAATACTAATAAATTTAGAAAACTTATTTAGAAAACTT
Found at i:4092320 original size:13 final size:13
Alignment explanation
Indices: 4092302--4092329 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
4092292 ATACTAATAA
4092302 ATTTAGAAAACTT
1 ATTTAGAAAACTT
4092315 ATTTAGAAAACTT
1 ATTTAGAAAACTT
4092328 AT
1 AT
4092330 AAATTTAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.46, C:0.07, G:0.07, T:0.39
Consensus pattern (13 bp):
ATTTAGAAAACTT
Found at i:4092337 original size:17 final size:17
Alignment explanation
Indices: 4092270--4092394 Score: 100
Period size: 17 Copynumber: 7.2 Consensus size: 17
4092260 TAGAACACTT
4092270 ATTTAGAAAACTTATAA
1 ATTTAGAAAACTTATAA
* *
4092287 ATTT--AATACTAATAA
1 ATTTAGAAAACTTATAA
4092302 ATTTAGAAAAC-T-T--
1 ATTTAGAAAACTTATAA
4092315 ATTTAGAAAACTTATAA
1 ATTTAGAAAACTTATAA
4092332 ATTTAGAAAACTTATATA
1 ATTTAGAAAACTTATA-A
* *
4092350 GATATTAAAACAATAATTATAA
1 -AT-TT-AGA-AA-ACTTATAA
4092372 TTATTTAGAAAACTTATAA
1 --ATTTAGAAAACTTATAA
4092391 ATTT
1 ATTT
4092395 TGTAGTAATA
Statistics
Matches: 86, Mismatches: 9, Indels: 26
0.71 0.07 0.21
Matches are distributed among these distances:
13 11 0.13
14 1 0.01
15 15 0.17
17 28 0.33
18 1 0.01
19 9 0.10
20 4 0.05
21 4 0.05
22 5 0.06
23 8 0.09
ACGTcount: A:0.51, C:0.06, G:0.05, T:0.38
Consensus pattern (17 bp):
ATTTAGAAAACTTATAA
Found at i:4092652 original size:21 final size:22
Alignment explanation
Indices: 4092626--4092666 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
4092616 TCCAAAATTT
4092626 ATTGCG-TTTTTGGCACGAATG
1 ATTGCGTTTTTTGGCACGAATG
*
4092647 ATTGCGTTTTTTTGCACGAA
1 ATTGCGTTTTTTGGCACGAA
4092667 CGTAGCAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.20, C:0.15, G:0.24, T:0.41
Consensus pattern (22 bp):
ATTGCGTTTTTTGGCACGAATG
Found at i:4092895 original size:22 final size:21
Alignment explanation
Indices: 4092870--4092921 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 21
4092860 ATGAATCAGA
*
4092870 TTACAAACCATAAATCGAAAGT
1 TTACAAACCAGAAATC-AAAGT
* *
4092892 TTACAAACC-GAATTCATAGT
1 TTACAAACCAGAAATCAAAGT
4092912 TTACAAACCA
1 TTACAAACCA
4092922 CAAAATGAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
20 13 0.50
21 4 0.15
22 9 0.35
ACGTcount: A:0.46, C:0.21, G:0.08, T:0.25
Consensus pattern (21 bp):
TTACAAACCAGAAATCAAAGT
Found at i:4094413 original size:15 final size:16
Alignment explanation
Indices: 4094393--4094427 Score: 63
Period size: 15 Copynumber: 2.2 Consensus size: 16
4094383 TTCAAATTTA
4094393 TAAATACTATCAAT-T
1 TAAATACTATCAATAT
4094408 TAAATACTATCAATAT
1 TAAATACTATCAATAT
4094424 TAAA
1 TAAA
4094428 ATTTATAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 14 0.74
16 5 0.26
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.37
Consensus pattern (16 bp):
TAAATACTATCAATAT
Found at i:4094806 original size:19 final size:19
Alignment explanation
Indices: 4094782--4094894 Score: 163
Period size: 19 Copynumber: 5.8 Consensus size: 19
4094772 AATTTTTTAG
4094782 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
**
4094801 GATATGCAATCCAAGATAT
1 GATATGCAATCTTAGATAT
4094820 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
*
4094841 GATATGCAATCTTAGAGAT
1 GATATGCAATCTTAGATAT
**
4094860 GATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
4094879 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
4094895 ATATATGATT
Statistics
Matches: 82, Mismatches: 10, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
19 65 0.79
21 17 0.21
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:4094827 original size:40 final size:40
Alignment explanation
Indices: 4094783--4094889 Score: 173
Period size: 40 Copynumber: 2.7 Consensus size: 40
4094773 ATTTTTTAGG
*
4094783 ATATGCAATCTTAGATATGATATGCAATCCAAGATATGAT
1 ATATGCAATCTTAGATATGATATGCAATCCAAGAGATGAT
**
4094823 ATATGCAATCTTAGATATGATATGCAATCTTAGAGATGAT
1 ATATGCAATCTTAGATATGATATGCAATCCAAGAGATGAT
4094863 ATAT--AATCTTAGATATGATATGCAATC
1 ATATGCAATCTTAGATATGATATGCAATC
4094890 TTAGAATATA
Statistics
Matches: 64, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
38 23 0.36
40 41 0.64
ACGTcount: A:0.39, C:0.11, G:0.15, T:0.35
Consensus pattern (40 bp):
ATATGCAATCTTAGATATGATATGCAATCCAAGAGATGAT
Found at i:4095536 original size:23 final size:23
Alignment explanation
Indices: 4095506--4095549 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
4095496 CATATATATA
4095506 TTTTTTTAAATGAATATTTTCCT
1 TTTTTTTAAATGAATATTTTCCT
4095529 TTTTTTTAAATGAATATTTTC
1 TTTTTTTAAATGAATATTTTC
4095550 ATATATATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.27, C:0.07, G:0.05, T:0.61
Consensus pattern (23 bp):
TTTTTTTAAATGAATATTTTCCT
Found at i:4096317 original size:98 final size:98
Alignment explanation
Indices: 4096184--4096380 Score: 349
Period size: 98 Copynumber: 2.0 Consensus size: 98
4096174 TTAAAAATAA
* * *
4096184 TAAAGGAAATATTCCGAGTTTGGGATTTTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAAGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
4096249 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
*
4096282 TAAAAGAAATATTCCGAGTTTGGGATTCTAGAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAAGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
*
4096347 TTAAATCTTGGATGAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
4096380 T
1 T
4096381 TTTATTGTAC
Statistics
Matches: 94, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
98 94 1.00
ACGTcount: A:0.28, C:0.10, G:0.25, T:0.37
Consensus pattern (98 bp):
TAAAAGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
Found at i:4100223 original size:41 final size:41
Alignment explanation
Indices: 4100166--4100311 Score: 220
Period size: 41 Copynumber: 3.6 Consensus size: 41
4100156 ACATATTCAT
* * *
4100166 CGGCACTTAGCCTGCTAGCCTTATAGCCTGATTCAAATCAC
1 CGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAGATCAC
* *
4100207 CGGCACTTAGCCTGCTAGGTTTATAACCTGGTTCAGATCAC
1 CGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAGATCAC
* *
4100248 CGGCACTTAGCCTGCTAGGTTTATAACCTGACTCAGATCAC
1 CGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAGATCAC
*
4100289 CGGCACTTAGCCTGCTAGACTTA
1 CGGCACTTAGCCTGCTAGGCTTA
4100312 AAGTCCGAAT
Statistics
Matches: 96, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 96 1.00
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.27
Consensus pattern (41 bp):
CGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAGATCAC
Found at i:4100330 original size:82 final size:82
Alignment explanation
Indices: 4100161--4100360 Score: 221
Period size: 82 Copynumber: 2.4 Consensus size: 82
4100151 ATTTAACATA
* ** * * *
4100161 TTCATCGGCACTTAGCCTGCTAGCCTTATAGCCTGATTCAAATCACCGGCACTTAGCCTGCTAGG
1 TTCACCGGCACTTAGCCTGCTAGGTTTATAACCTGACTCAAATCACCGGCACTTAGCCTGCTAGA
* *
4100226 TTTATAACCTGGTTCAG
66 CTTATAACCTGATTCAG
* *
4100243 ATCACCGGCACTTAGCCTGCTAGGTTTATAACCTGACTCAGATCACCGGCACTTAGCCTGCTAGA
1 TTCACCGGCACTTAGCCTGCTAGGTTTATAACCTGACTCAAATCACCGGCACTTAGCCTGCTAGA
*
4100308 CTTA-AAGTCC-GAATT-AT
66 CTTATAA--CCTG-ATTCAG
4100325 TTCACCGGC-CTTAAGCCTGCTAGGTTT-TAAACCTGA
1 TTCACCGGCACTT-AGCCTGCTAGGTTTAT-AACCTGA
4100361 AAGTTTCATT
Statistics
Matches: 101, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
81 6 0.06
82 91 0.90
83 4 0.04
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (82 bp):
TTCACCGGCACTTAGCCTGCTAGGTTTATAACCTGACTCAAATCACCGGCACTTAGCCTGCTAGA
CTTATAACCTGATTCAG
Found at i:4102029 original size:14 final size:15
Alignment explanation
Indices: 4102010--4102038 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
4102000 ACACGAAATT
4102010 TTCACACA-AATAAA
1 TTCACACATAATAAA
4102024 TTCACACATAATAAA
1 TTCACACATAATAAA
4102039 CACATAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.55, C:0.21, G:0.00, T:0.24
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:4104321 original size:25 final size:25
Alignment explanation
Indices: 4104264--4104326 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 25
4104254 TGTAGCTGTG
* * *
4104264 CTGCCAAAATATATAGTGCAGGTATA
1 CTGCCAGAAT-TATAGTGCAGATAAA
**
4104290 CCACCAGAATTATAGTGCAGATAAA
1 CTGCCAGAATTATAGTGCAGATAAA
4104315 CTGCCAGAATTA
1 CTGCCAGAATTA
4104327 GACTTCCTTC
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
25 23 0.77
26 7 0.23
ACGTcount: A:0.40, C:0.19, G:0.17, T:0.24
Consensus pattern (25 bp):
CTGCCAGAATTATAGTGCAGATAAA
Found at i:4106147 original size:9 final size:9
Alignment explanation
Indices: 4106133--4106199 Score: 100
Period size: 9 Copynumber: 7.4 Consensus size: 9
4106123 GTAGGGATTC
4106133 AATTCGGTT
1 AATTCGGTT
4106142 AATTCGGTT
1 AATTCGGTT
*
4106151 AATTTAGG-T
1 AA-TTCGGTT
4106160 AATTCGGTT
1 AATTCGGTT
*
4106169 AATTCGGGT
1 AATTCGGTT
4106178 AATTCGGTT
1 AATTCGGTT
4106187 AATTCGGTT
1 AATTCGGTT
4106196 AATT
1 AATT
4106200 TTTAACCAAA
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
8 4 0.08
9 44 0.85
10 4 0.08
ACGTcount: A:0.25, C:0.09, G:0.22, T:0.43
Consensus pattern (9 bp):
AATTCGGTT
Found at i:4111206 original size:14 final size:14
Alignment explanation
Indices: 4111179--4111224 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
4111169 TCGTTTATAC
4111179 TTAAA-TTAATTTAA
1 TTAAACTTAA-TTAA
4111193 TTAAACTTAATTAA
1 TTAAACTTAATTAA
*
4111207 TT-TACTTTAATTAA
1 TTAAAC-TTAATTAA
4111221 TTAA
1 TTAA
4111225 TCCATAATCC
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
13 2 0.07
14 21 0.78
15 4 0.15
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (14 bp):
TTAAACTTAATTAA
Found at i:4111441 original size:24 final size:24
Alignment explanation
Indices: 4111414--4111503 Score: 72
Period size: 24 Copynumber: 3.4 Consensus size: 24
4111404 AATTAATCAC
*
4111414 AATTGCAATTAAATTACTAATTCA
1 AATTCCAATTAAATTACTAATTCA
* *
4111438 AATTCCAATTCATCTATACACTAATTAATCA
1 AATTCCAATT-A--AAT-TACTAA-T--TCA
*
4111469 CAATTGCAATTAAATTACTAATTCA
1 -AATTCCAATTAAATTACTAATTCA
4111494 AATTCCAATT
1 AATTCCAATT
4111504 CATCTATACA
Statistics
Matches: 51, Mismatches: 7, Indels: 16
0.69 0.09 0.22
Matches are distributed among these distances:
24 18 0.35
25 4 0.08
27 3 0.06
28 10 0.20
29 3 0.06
31 4 0.08
32 9 0.18
ACGTcount: A:0.43, C:0.18, G:0.02, T:0.37
Consensus pattern (24 bp):
AATTCCAATTAAATTACTAATTCA
Found at i:4111460 original size:28 final size:28
Alignment explanation
Indices: 4111429--4111517 Score: 96
Period size: 28 Copynumber: 3.2 Consensus size: 28
4111419 CAATTAAATT
4111429 ACTAATTCAAATTCCAATTCATCTATAC
1 ACTAATTCAAATTCCAATTCATCTATAC
* *
4111457 ACTAATT--AA-TCACAATTGCAAT-TAAATT
1 ACTAATTCAAATTC-CAATT-C-ATCTATA-C
4111485 ACTAATTCAAATTCCAATTCATCTATAC
1 ACTAATTCAAATTCCAATTCATCTATAC
4111513 ACTAA
1 ACTAA
4111518 CTCTGAAAAT
Statistics
Matches: 49, Mismatches: 4, Indels: 16
0.71 0.06 0.23
Matches are distributed among these distances:
25 2 0.04
26 7 0.14
27 4 0.08
28 23 0.47
29 4 0.08
30 7 0.14
31 2 0.04
ACGTcount: A:0.43, C:0.21, G:0.01, T:0.35
Consensus pattern (28 bp):
ACTAATTCAAATTCCAATTCATCTATAC
Found at i:4111465 original size:56 final size:56
Alignment explanation
Indices: 4111403--4111517 Score: 230
Period size: 56 Copynumber: 2.1 Consensus size: 56
4111393 CCTTAGGTCT
4111403 TAATTAATCACAATTGCAATTAAATTACTAATTCAAATTCCAATTCATCTATACAC
1 TAATTAATCACAATTGCAATTAAATTACTAATTCAAATTCCAATTCATCTATACAC
4111459 TAATTAATCACAATTGCAATTAAATTACTAATTCAAATTCCAATTCATCTATACAC
1 TAATTAATCACAATTGCAATTAAATTACTAATTCAAATTCCAATTCATCTATACAC
4111515 TAA
1 TAA
4111518 CTCTGAAAAT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 59 1.00
ACGTcount: A:0.43, C:0.19, G:0.02, T:0.36
Consensus pattern (56 bp):
TAATTAATCACAATTGCAATTAAATTACTAATTCAAATTCCAATTCATCTATACAC
Found at i:4113287 original size:24 final size:24
Alignment explanation
Indices: 4113238--4113287 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
4113228 CTCGTCCTAA
*
4113238 ACCAAAATGAAACTTACCACTTCC
1 ACCAAAATGAAACTTACCACTACC
* * *
4113262 ACCAAAATGCAAGTTACCGCTACC
1 ACCAAAATGAAACTTACCACTACC
4113286 AC
1 AC
4113288 TTCCACCACC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.40, C:0.34, G:0.08, T:0.18
Consensus pattern (24 bp):
ACCAAAATGAAACTTACCACTACC
Found at i:4113352 original size:66 final size:66
Alignment explanation
Indices: 4113279--4113493 Score: 342
Period size: 66 Copynumber: 3.3 Consensus size: 66
4113269 TGCAAGTTAC
4113279 CGCTACCACTTCCACCACCTTTTCCACTAAACCCTCCTTCCCCTCCTGCTCCACCAGCAACATTA
1 CGCTACCACTTCCACCACCTTTTCCACTAAACCCTCCTTCCCCTCCTGCTCCACCAGCAACATTA
4113344 G
66 G
4113345 CGCTACCACTTCCACCACCTTTTCCACTAAACCCTCCTTCCCCTCCTGCTCCACCAGCAACATTA
1 CGCTACCACTTCCACCACCTTTTCCACTAAACCCTCCTTCCCCTCCTGCTCCACCAGCAACATTA
4113410 G
66 G
* * ** * * *
4113411 CGCTACCACTTCCACCACCTTTTCCACCAAACCCACCTTGTCCTCTTACTCCACCTA-TAACATT
1 CGCTACCACTTCCACCACCTTTTCCACTAAACCCTCCTTCCCCTCCTGCTCCACC-AGCAACATT
4113475 AG
65 AG
*
4113477 TGCTACCACTTCCACCA
1 CGCTACCACTTCCACCA
4113494 AACCCTCCTT
Statistics
Matches: 140, Mismatches: 8, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
66 139 0.99
67 1 0.01
ACGTcount: A:0.22, C:0.47, G:0.06, T:0.25
Consensus pattern (66 bp):
CGCTACCACTTCCACCACCTTTTCCACTAAACCCTCCTTCCCCTCCTGCTCCACCAGCAACATTA
G
Found at i:4113519 original size:120 final size:120
Alignment explanation
Indices: 4113366--4113613 Score: 336
Period size: 120 Copynumber: 2.1 Consensus size: 120
4113356 CCACCACCTT
* * *
4113366 TTCCACTAAACCCTCCTTCCCCTCCTGCTCCACCAGCAACATTAGCGCTACCACTTCCACCACCT
1 TTCCACCAAACCCTCCTTCCCCTCCTACTCCACCAGCAACATTAGCGATACCACTTCCACCACCT
* * * * *
4113431 TTTCCACCAAACCCACCTTGTCCTCTTACTCCACCTA-TAACATTAGTGCTACCAC
66 TTTCCACCAAACCCACCTTGCCCTCCTACTCCACC-AGCAAAATTAGCGCTACCAC
* ** * * *
4113486 TTCCACCAAACCCTCCTTTCCCTTTTATTCCACCAGCAACATTAGCGATGCTACTTCCACCACCT
1 TTCCACCAAACCCTCCTTCCCCTCCTACTCCACCAGCAACATTAGCGATACCACTTCCACCACCT
*
4113551 TTTCCACCAAACCCTCCTTGCCCTCCTACTCCACCAGCAAAATTAGCGCTACCAC
66 TTTCCACCAAACCCACCTTGCCCTCCTACTCCACCAGCAAAATTAGCGCTACCAC
*
4113606 TTGCACCA
1 TTCCACCA
4113614 CCTTTTCCAC
Statistics
Matches: 111, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
119 1 0.01
120 110 0.99
ACGTcount: A:0.24, C:0.44, G:0.06, T:0.26
Consensus pattern (120 bp):
TTCCACCAAACCCTCCTTCCCCTCCTACTCCACCAGCAACATTAGCGATACCACTTCCACCACCT
TTTCCACCAAACCCACCTTGCCCTCCTACTCCACCAGCAAAATTAGCGCTACCAC
Found at i:4113542 original size:54 final size:54
Alignment explanation
Indices: 4113432--4113547 Score: 128
Period size: 54 Copynumber: 2.1 Consensus size: 54
4113422 CCACCACCTT
* * *
4113432 TTCCACCAAACCCACCTTGTCCTCTTACTCCACCTATAACATTAGTGCTACCAC
1 TTCCACCAAACCCACCTTGTCCTCTTACTCCACCTACAACATTAGCGATACCAC
* * * * *
4113486 TTCCACCAAACCCTCCTT-TCCCTTTTATTCCACC-AGCAACATTAGCGATGCTAC
1 TTCCACCAAACCCACCTTGT-CCTCTTACTCCACCTA-CAACATTAGCGATACCAC
4113540 TTCCACCA
1 TTCCACCA
4113548 CCTTTTCCAC
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
53 2 0.04
54 50 0.96
ACGTcount: A:0.25, C:0.41, G:0.06, T:0.28
Consensus pattern (54 bp):
TTCCACCAAACCCACCTTGTCCTCTTACTCCACCTACAACATTAGCGATACCAC
Found at i:4113556 original size:66 final size:66
Alignment explanation
Indices: 4113486--4114124 Score: 737
Period size: 66 Copynumber: 9.4 Consensus size: 66
4113476 GTGCTACCAC
* ** * * *
4113486 TTCCACCAAACCCTCCTTTCCCTTTTATTCCACCAGCAACATTAGCGATGCTACTTCCACCACCT
1 TTCCACCAAACCCTCCTTGCCCTCCTACTCCACCAGCAACATTAGCGATACCACTTCCACCACCT
4113551 T
66 T
* * *
4113552 TTCCACCAAACCCTCCTTGCCCTCCTACTCCACCAGCAAAATTAGCGCTACCACTTGCACCACCT
1 TTCCACCAAACCCTCCTTGCCCTCCTACTCCACCAGCAACATTAGCGATACCACTTCCACCACCT
4113617 T
66 T
*
4113618 TTCCACCAAACCCTCCTTGCCCTCCTACTCCACCAGCAACATTAGCACTATCACTTGCGCTACCA
1 TTCCACCAAACCCTCCTTGCCCTCCTACTCCACCAGCAACATTAG--CGAT-A----C-C-A-C-
4113683 GTTCCACCACCTT
55 -TTCCACCACCTT
* * * * * * *
4113696 TTCCACTAAACCCTCCTTGCCCTACAAATCCACCAGCAAAATTAGC-ATTACTAGTTCCACCACC
1 TTCCACCAAACCCTCCTTGCCCTCCTACTCCACCAGCAACATTAGCGA-TACCACTTCCACCACC
4113760 TT
65 TT
* * * * *
4113762 TTCCACCAAACTCTCCTTTCCCTCCAAATCCACCATCAACATTAGC-ACTACCACTTCCACTTCC
1 TTCCACCAAACCCTCCTTGCCCTCCTACTCCACCAGCAACATTAGCGA-T---A---CCACTTCC
4113826 ACCACCTT
59 ACCACCTT
* * * *
4113834 TCCCACCAAACCCTCCTTGCCCTCCTACTCCACCAGCAACATTAGGGCTACCACTTCTACCACCT
1 TTCCACCAAACCCTCCTTGCCCTCCTACTCCACCAGCAACATTAGCGATACCACTTCCACCACCT
4113899 T
66 T
*
4113900 TTCCACCAAACCCTCCTTGCCCTCCTACTCCACCAGCAACATTAGCGCTACCACTTCCACCACCT
1 TTCCACCAAACCCTCCTTGCCCTCCTACTCCACCAGCAACATTAGCGATACCACTTCCACCACCT
4113965 T
66 T
* *
4113966 TTCCAACAAACCCTCCTTGTCCTCCTACTCCACC-GACAACATTAGC-ACTACCACTTCCACCAC
1 TTCCACCAAACCCTCCTTGCCCTCCTACTCCACCAG-CAACATTAGCGA-TACCACTTCCACCAC
4114029 CTT
64 CTT
** * * *
4114032 TTCCTTCAAACCCTCCTTGCCCTCCTACTCCACCAGCAATATTACCGCTACCACTTCCACCACCT
1 TTCCACCAAACCCTCCTTGCCCTCCTACTCCACCAGCAACATTAGCGATACCACTTCCACCACCT
4114097 T
66 T
*
4114098 TTCCACCAAACCCTCCTTGTCCTCCTA
1 TTCCACCAAACCCTCCTTGCCCTCCTA
4114125 TATTACCTCC
Statistics
Matches: 496, Mismatches: 53, Indels: 48
0.83 0.09 0.08
Matches are distributed among these distances:
65 1 0.00
66 374 0.75
67 1 0.00
68 2 0.00
69 4 0.01
71 1 0.00
72 54 0.11
73 1 0.00
74 1 0.00
75 3 0.01
76 3 0.01
78 51 0.10
ACGTcount: A:0.24, C:0.45, G:0.06, T:0.25
Consensus pattern (66 bp):
TTCCACCAAACCCTCCTTGCCCTCCTACTCCACCAGCAACATTAGCGATACCACTTCCACCACCT
T
Found at i:4113621 original size:186 final size:187
Alignment explanation
Indices: 4113300--4114093 Score: 686
Period size: 186 Copynumber: 4.0 Consensus size: 187
4113290 CCACCACCTT
* * * *
4113300 TTCCACTAAACCCTCCTTCCCCTCCTGCTCCACCAGCAACATTAGCGCTACCACTTCCACCACCT
1 TTCCACCAAACCCTCCTTGCCCTCCTACTCCACCAGCAACATTAGCGATACCACTTCCACCACCT
* * * *
4113365 TTTCCACTAAACCCTCCTTCCCCTCCTGCTCCACCAGCAACATTAGCGCTACCACTTCCACCACC
66 TTTCCACCAAACCCTCCTTGCCCTCCTACTCCACCAGCAACATTAGCACTACCACTTCCACCACC
* * * *
4113430 TTTTCCACCAAACCCACCTTGTCCTCTTACTCCACCTA-TAACATTAG-TGCTACCAC
131 TTTTCCACCAAACCCTCCTTGCCCTCCTACTCCACC-AGCAACATTAGCTGCTACCAC
* ** * * *
4113486 TTCCACCAAACCCTCCTTTCCCTTTTATTCCACCAGCAACATTAGCGATGCTACTTCCACCACCT
1 TTCCACCAAACCCTCCTTGCCCTCCTACTCCACCAGCAACATTAGCGATACCACTTCCACCACCT
* * *
4113551 TTTCCACCAAACCCTCCTTGCCCTCCTACTCCACCAGCAAAATTAGCGCTACCACTTGCACCACC
66 TTTCCACCAAACCCTCCTTGCCCTCCTACTCCACCAGCAACATTAGCACTACCACTTCCACCACC
* *
4113616 TTTTCCACCAAACCCTCCTTGCCCTCCTACTCCACCAGCAACATTAGC-ACTATCAC
131 TTTTCCACCAAACCCTCCTTGCCCTCCTACTCCACCAGCAACATTAGCTGCTACCAC
** * * * * **
4113672 TTGCGCTACCAGTTCCACCACCTTTTCCACTAAACCCTCCTTGCC-CTA-CAAATCCACCAGCAA
1 TT-C-C-ACCA--AAC-CCTCC-TTGCC-CT----CCTAC-T-CCACCAGC-AA--CATTAGC--
* * * * * * * *
4113735 AATTAGCA-TTACTAGTTCCACCACCTTTTCCACCAAACTCTCCTTTCCCTCCAAATCCACCATC
47 GA-TACCACTT-CCA---CCAC---CTTTTCCACCAAACCCTCCTTGCCCTCCTACTCCACCAGC
*
4113799 AACATTAGCACTACCACTTCCACTTCCACCACCTTTCCCACCAAACCCTCCTTGCCCTCCTACTC
104 AACATTAGCACT---A---CCACTTCCACCACCTTTTCCACCAAACCCTCCTTGCCCTCCTACTC
*
4113864 CACCAGCAACATTAGGGCTACCACTTCTACCACC
163 CACCAGCAACATTA--G------CTGCTACCA-C
*
4113898 TTTTCCACCAAACCCTCCTTGCCCTCCTACTCCACCAGCAACATTAGCGCTACCACTTCCACCAC
1 --TTCCACCAAACCCTCCTTGCCCTCCTACTCCACCAGCAACATTAGCGATACCACTTCCACCAC
* *
4113963 CTTTTCCAACAAACCCTCCTTGTCCTCCTACTCCACC-GACAACATTAGCACTACCACTTCCACC
64 CTTTTCCACCAAACCCTCCTTGCCCTCCTACTCCACCAG-CAACATTAGCACTACCACTTCCACC
** * *
4114027 ACCTTTTCCTTCAAACCCTCCTTGCCCTCCTACTCCACCAGCAATATTA-CCGCTACCAC
128 ACCTTTTCCACCAAACCCTCCTTGCCCTCCTACTCCACCAGCAACATTAGCTGCTACCAC
4114086 TTCCACCA
1 TTCCACCA
4114094 CCTTTTCCAC
Statistics
Matches: 486, Mismatches: 71, Indels: 102
0.74 0.11 0.15
Matches are distributed among these distances:
185 1 0.00
186 173 0.36
187 1 0.00
188 2 0.00
189 11 0.02
191 1 0.00
192 4 0.01
193 5 0.01
194 2 0.00
198 58 0.12
199 5 0.01
200 2 0.00
201 6 0.01
203 3 0.01
204 48 0.10
207 8 0.02
210 51 0.10
211 2 0.00
213 6 0.01
214 2 0.00
215 5 0.01
216 63 0.13
218 1 0.00
220 2 0.00
221 4 0.01
222 4 0.01
223 1 0.00
224 1 0.00
225 9 0.02
226 2 0.00
227 1 0.00
228 2 0.00
ACGTcount: A:0.24, C:0.45, G:0.06, T:0.25
Consensus pattern (187 bp):
TTCCACCAAACCCTCCTTGCCCTCCTACTCCACCAGCAACATTAGCGATACCACTTCCACCACCT
TTTCCACCAAACCCTCCTTGCCCTCCTACTCCACCAGCAACATTAGCACTACCACTTCCACCACC
TTTTCCACCAAACCCTCCTTGCCCTCCTACTCCACCAGCAACATTAGCTGCTACCAC
Found at i:4114141 original size:348 final size:343
Alignment explanation
Indices: 4113488--4114115 Score: 905
Period size: 348 Copynumber: 1.8 Consensus size: 343
4113478 GCTACCACTT
* ** * * *
4113488 CCACCAAACCCTCCTTTCCCTTTTATTCCACCAGCAACATTAGCGATGCTACTTCCACCACCTTT
1 CCACCAAACCCTCCTTGCCCTCCTACTCCACCAGCAACATTAGCGATACCACTTCCACCACCTTT
*
4113553 TCCACCAAACCCTCCTTGCCCTCCTACTCCACCAGCAAAATTAGCGCTACCACTTGCACCACCTT
66 TCCACCAAACCCTCCTTGCCCTCCTACTCCACCAGCAAAATTAGCGCTACCACTTCCACCACCTT
*
4113618 TTCCACCAAACCCTCCTTGCCCTCCTACTCCACCAGCAACATTAGCACTATCACTTGCGCTACCA
131 TTCCAACAAACCCTCCTTGCCCTCCTACTCCACCAGCAACATTAGCAC-ATCA--T-CGCTACCA
* * *
4113683 GTTCCACCACCTTTTCCACTAAACCCTCCTTGCCCTACAAATCCACCAGCAAAATTAGCATTACT
192 -TTCCACCACCTTTTCCACTAAACCCTCCTTGCCCTACAAATCCACCAGCAAAATTACCACTACC
* *
4113748 AGTTCCACCACCTTTTCCACCAAACTCTCCTTTCCCTCCAAATCCACCATCAACATTAGCACTAC
256 ACTTCCACCACCTTTTCCACCAAACTCTCCTTTACCTCCAAATCCACCATCAACATTAGCACTAC
4113813 CACTTCCACTTCCACCACCTTTC
321 CACTTCCACTTCCACCACCTTTC
* * *
4113836 CCACCAAACCCTCCTTGCCCTCCTACTCCACCAGCAACATTAGGGCTACCACTTCTACCACCTTT
1 CCACCAAACCCTCCTTGCCCTCCTACTCCACCAGCAACATTAGCGATACCACTTCCACCACCTTT
*
4113901 TCCACCAAACCCTCCTTGCCCTCCTACTCCACCAGCAACATTAGCGCTACCACTTCCACCACCTT
66 TCCACCAAACCCTCCTTGCCCTCCTACTCCACCAGCAAAATTAGCGCTACCACTTCCACCACCTT
*
4113966 TTCCAACAAACCCTCCTTGTCCTCCTACTCCACC-GACAACATTAGCAC-T-A-C-C-A-C-TTC
131 TTCCAACAAACCCTCCTTGCCCTCCTACTCCACCAG-CAACATTAGCACATCATCGCTACCATTC
* * * * * *
4114023 CACCACCTTTTCC-TTCAAACCCTCCTTGCCCTCCTACTCCACCAGCAATATTACCGCTACCACT
195 CACCACCTTTTCCACT-AAACCCTCCTTGCCCTACAAATCCACCAGCAAAATTACCACTACCACT
*
4114087 TCCACCACCTTTTCCACCAAACCCTCCTT
259 TCCACCACCTTTTCCACCAAACTCTCCTT
4114116 GTCCTCCTAT
Statistics
Matches: 254, Mismatches: 24, Indels: 16
0.86 0.08 0.05
Matches are distributed among these distances:
335 1 0.00
336 83 0.33
338 1 0.00
339 1 0.00
340 1 0.00
341 1 0.00
345 1 0.00
346 1 0.00
347 1 0.00
348 163 0.64
ACGTcount: A:0.24, C:0.45, G:0.06, T:0.25
Consensus pattern (343 bp):
CCACCAAACCCTCCTTGCCCTCCTACTCCACCAGCAACATTAGCGATACCACTTCCACCACCTTT
TCCACCAAACCCTCCTTGCCCTCCTACTCCACCAGCAAAATTAGCGCTACCACTTCCACCACCTT
TTCCAACAAACCCTCCTTGCCCTCCTACTCCACCAGCAACATTAGCACATCATCGCTACCATTCC
ACCACCTTTTCCACTAAACCCTCCTTGCCCTACAAATCCACCAGCAAAATTACCACTACCACTTC
CACCACCTTTTCCACCAAACTCTCCTTTACCTCCAAATCCACCATCAACATTAGCACTACCACTT
CCACTTCCACCACCTTTC
Found at i:4114187 original size:90 final size:90
Alignment explanation
Indices: 4114061--4114324 Score: 363
Period size: 90 Copynumber: 3.1 Consensus size: 90
4114051 CCCTCCTACT
* * *
4114061 CCACCAGCAATATTACCGCTACCACTTCCACCACCTTTTCCACCAAACCCTCCTTGTCCTCCTAT
1 CCACCAGCAATATTACTGCTACCACTTCCACTACCTTTTCCACCAAACTCTCCTTGTCCTCCTAT
4114126 ATTACCTCCAAATCCAACACTTTTA
66 ATTACCTCCAAATCCAACACTTTTA
* * *
4114151 TCACTAGCAATATTACTGCTACCACTTCCACTACCTTTTCCACCAAATTCTCCTTGTCCTCCTAT
1 CCACCAGCAATATTACTGCTACCACTTCCACTACCTTTTCCACCAAACTCTCCTTGTCCTCCTAT
4114216 ATTACCTCCAAATCCAACACTTTTA
66 ATTACCTCCAAATCCAACACTTTTA
4114241 CCACCAGC-A-A-TA-T--T---A---CCACTACCTTTTCCACCAAACTCTCCTTGTCCTCCTAT
1 CCACCAGCAATATTACTGCTACCACTTCCACTACCTTTTCCACCAAACTCTCCTTGTCCTCCTAT
* * *
4114294 ATTGCCTCCAACTCCAACACCTTTA
66 ATTACCTCCAAATCCAACACTTTTA
4114319 CCACCA
1 CCACCA
4114325 CCTCCTGCTA
Statistics
Matches: 162, Mismatches: 12, Indels: 12
0.87 0.06 0.06
Matches are distributed among these distances:
78 65 0.40
81 1 0.01
84 1 0.01
86 1 0.01
87 2 0.01
88 1 0.01
89 1 0.01
90 90 0.56
ACGTcount: A:0.27, C:0.40, G:0.03, T:0.30
Consensus pattern (90 bp):
CCACCAGCAATATTACTGCTACCACTTCCACTACCTTTTCCACCAAACTCTCCTTGTCCTCCTAT
ATTACCTCCAAATCCAACACTTTTA
Found at i:4120583 original size:39 final size:39
Alignment explanation
Indices: 4120529--4120614 Score: 172
Period size: 39 Copynumber: 2.2 Consensus size: 39
4120519 TTCCCTTCTA
4120529 TTCCACCAGCAACATTAGCGCTACCACTTCCACCACCTT
1 TTCCACCAGCAACATTAGCGCTACCACTTCCACCACCTT
4120568 TTCCACCAGCAACATTAGCGCTACCACTTCCACCACCTT
1 TTCCACCAGCAACATTAGCGCTACCACTTCCACCACCTT
4120607 TTCCACCA
1 TTCCACCA
4120615 AACCCTCCTT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 47 1.00
ACGTcount: A:0.26, C:0.44, G:0.07, T:0.23
Consensus pattern (39 bp):
TTCCACCAGCAACATTAGCGCTACCACTTCCACCACCTT
Found at i:4120643 original size:66 final size:66
Alignment explanation
Indices: 4120569--4121095 Score: 747
Period size: 66 Copynumber: 8.0 Consensus size: 66
4120559 CACCACCTTT
*
4120569 TCCACCAGCAACATTAGCGCTACCACTTCCACCACCTTTTCCACCAAACCCTCCTTGCCCTCCTA
1 TCCACCAGCAACATTAGCACTACCACTTCCACCACCTTTTCCACCAAACCCTCCTTGCCCTCCTA
4120634 C
66 C
** * *
4120635 TCCACCAGCAACATTAGTGCTACCACTTCCACCACCGTTTCCACCAAACCCTCATTGCCCTCCTA
1 TCCACCAGCAACATTAGCACTACCACTTCCACCACCTTTTCCACCAAACCCTCCTTGCCCTCCTA
4120700 C
66 C
**
4120701 TTTACCAGCAACATTAGCACTACCACTTCCACCACCTTTTCCACCAAACCC-CCATTGCCCTCCT
1 TCCACCAGCAACATTAGCACTACCACTTCCACCACCTTTTCCACCAAACCCTCC-TTGCCCTCCT
*
4120765 GC
65 AC
* * *
4120767 TCCATCAACAACAGTAGCACTACCACTTCCACCACCTTTTCCACCAAACCCTCCTTGCCCTCCTA
1 TCCACCAGCAACATTAGCACTACCACTTCCACCACCTTTTCCACCAAACCCTCCTTGCCCTCCTA
4120832 C
66 C
** * *
4120833 TCCACCAGCAACATTAGCGTTACTACTTCCACCACCTTTTCCACCAAACCC-CCTTTGTCCTCCT
1 TCCACCAGCAACATTAGCACTACCACTTCCACCACCTTTTCCACCAAACCCTCC-TTGCCCTCCT
4120897 AC
65 AC
* * *
4120899 TCCACTAGCAAAATTAGCACTACCACTTCCACCA-CTGTTTCCTCCAAACCCTCCTTGCCCTCCT
1 TCCACCAGCAACATTAGCACTACCACTTCCACCACCT-TTTCCACCAAACCCTCCTTGCCCTCCT
4120963 AC
65 AC
** * * *
4120965 TCCACCAGCAACATTAGCGTTACTACTTCCACCACCTTTTCCACCAAACCCCCCTTGTCCTCCTA
1 TCCACCAGCAACATTAGCACTACCACTTCCACCACCTTTTCCACCAAACCCTCCTTGCCCTCCTA
4121030 C
66 C
* * * *
4121031 TCCACCAGCAAAATTAGCACTACCACTTCCACCA-CTGTTTCCTCCAAACCCTCATTGTCCTCCT
1 TCCACCAGCAACATTAGCACTACCACTTCCACCACCT-TTTCCACCAAACCCTCCTTGCCCTCCT
4121095 A
65 A
4121096 TATTACCTCC
Statistics
Matches: 409, Mismatches: 45, Indels: 14
0.87 0.10 0.03
Matches are distributed among these distances:
65 7 0.02
66 396 0.97
67 6 0.01
ACGTcount: A:0.24, C:0.45, G:0.06, T:0.25
Consensus pattern (66 bp):
TCCACCAGCAACATTAGCACTACCACTTCCACCACCTTTTCCACCAAACCCTCCTTGCCCTCCTA
C
Found at i:4129716 original size:146 final size:146
Alignment explanation
Indices: 4129452--4129746 Score: 421
Period size: 146 Copynumber: 2.0 Consensus size: 146
4129442 GGGTCCAAAT
* * * * * *
4129452 ATGCTATCAACCCCAAGACTGCTTTTGCCTATTTAAACACGATTCAATCATTCAACATTAGAATA
1 ATGCTATCAACCCCAAGACTGCTGTTGCCAATTAAAACAAGATTCAATCATTCAACATTACAACA
** * *
4129517 CTTGATTTCGACTTAAAATCCAGCAACAATACAAGCACAGAAGTAGATTATTCATCCCTCCACAC
66 CTCAATTTCGACTTAAAATCCAGCAACAATACAAGCACAGAAGTAGATTATTCATCCCTACAAAC
*
4129582 TAACAAATTCAAACAA
131 CAACAAATTCAAACAA
** **
4129598 ATGCTATCAACCCCAAGACTGCTGTT-CCAATTAAAACAATTTTCAATCATTCAGTATTACAACA
1 ATGCTATCAACCCCAAGACTGCTGTTGCCAATTAAAACAAGATTCAATCATTCAACATTACAACA
* *
4129662 CTCAATTTCTACTTAAAAATCCAGCAACAATACAAGCACATAAGTAGATTATTCATCCCTACAAA
66 CTCAATTTCGACTT-AAAATCCAGCAACAATACAAGCACAGAAGTAGATTATTCATCCCTACAAA
4129727 CCAACAAATTCAAACAA
130 CCAACAAATTCAAACAA
4129744 ATG
1 ATG
4129747 AGAATAATAA
Statistics
Matches: 131, Mismatches: 17, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
145 40 0.31
146 91 0.69
ACGTcount: A:0.41, C:0.25, G:0.08, T:0.26
Consensus pattern (146 bp):
ATGCTATCAACCCCAAGACTGCTGTTGCCAATTAAAACAAGATTCAATCATTCAACATTACAACA
CTCAATTTCGACTTAAAATCCAGCAACAATACAAGCACAGAAGTAGATTATTCATCCCTACAAAC
CAACAAATTCAAACAA
Found at i:4131058 original size:23 final size:22
Alignment explanation
Indices: 4131032--4131075 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 22
4131022 TTTTCATTTT
* *
4131032 TTTTTCTTGAATTTTTTAGAAAA
1 TTTTGCTTAAATTTTTT-GAAAA
*
4131055 TTTTGGTTAAATTTTTTGAAA
1 TTTTGCTTAAATTTTTTGAAA
4131076 GTCCTCATTA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 4 0.22
23 14 0.78
ACGTcount: A:0.30, C:0.02, G:0.11, T:0.57
Consensus pattern (22 bp):
TTTTGCTTAAATTTTTTGAAAA
Found at i:4134620 original size:22 final size:21
Alignment explanation
Indices: 4134587--4134635 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 21
4134577 ATCAATATAC
4134587 ATTTT-TAGTTTTAT-ATTTAT
1 ATTTTATAGTTTTATAATTT-T
4134607 ATTTTATAGTTTTTATAATTTT
1 ATTTTATAG-TTTTATAATTTT
4134629 ATTTTAT
1 ATTTTAT
4134636 TTAATAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
20 5 0.19
21 3 0.12
22 14 0.54
23 4 0.15
ACGTcount: A:0.27, C:0.00, G:0.04, T:0.69
Consensus pattern (21 bp):
ATTTTATAGTTTTATAATTTT
Found at i:4135079 original size:22 final size:23
Alignment explanation
Indices: 4135043--4135086 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
4135033 TTTTAAATAT
* *
4135043 TAAAAAATTATAATTATGAAACA
1 TAAAAAATTAAAATTATAAAACA
4135066 TAAAAAA-TAAAATTATAAAAC
1 TAAAAAATTAAAATTATAAAAC
4135087 CAAAACAACT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.66, C:0.05, G:0.02, T:0.27
Consensus pattern (23 bp):
TAAAAAATTAAAATTATAAAACA
Found at i:4135525 original size:16 final size:15
Alignment explanation
Indices: 4135502--4135535 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
4135492 GAAATTAAAT
4135502 TTTAATTTTTAATAA
1 TTTAATTTTTAATAA
*
4135517 TTTATATTTTTTATAA
1 TTTA-ATTTTTAATAA
4135533 TTT
1 TTT
4135536 TTAAAAGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (15 bp):
TTTAATTTTTAATAA
Found at i:4135551 original size:26 final size:26
Alignment explanation
Indices: 4135504--4135554 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
4135494 AATTAAATTT
* *
4135504 TAATTTTTAATAATTTATATTTTTTA
1 TAATTTTTAATAAATTAAATTTTTTA
4135530 TAATTTTTAA-AAGATTAAATTTTTT
1 TAATTTTTAATAA-ATTAAATTTTTT
4135555 TTAGGGATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 2 0.09
26 20 0.91
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (26 bp):
TAATTTTTAATAAATTAAATTTTTTA
Found at i:4135817 original size:15 final size:15
Alignment explanation
Indices: 4135797--4135828 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
4135787 TTTAAATAAT
4135797 TTTTAAGTTTTTCAA
1 TTTTAAGTTTTTCAA
*
4135812 TTTTAATTTTTTCAA
1 TTTTAAGTTTTTCAA
4135827 TT
1 TT
4135829 GTAAATTTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.25, C:0.06, G:0.03, T:0.66
Consensus pattern (15 bp):
TTTTAAGTTTTTCAA
Found at i:4138412 original size:4 final size:4
Alignment explanation
Indices: 4138403--4138430 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
4138393 TAACCCAACA
4138403 ATTT ATTT ATTT ATTT ATTT ATTT ATTT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT
4138431 TTACTTTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
ATTT
Found at i:4138942 original size:24 final size:24
Alignment explanation
Indices: 4138914--4138960 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
4138904 TTAAACTATT
*
4138914 ATTATGAAGCATCTTACAGTTTTC
1 ATTATGAAGCATCTTAAAGTTTTC
*
4138938 ATTATGAAGTATCTTAAAGTTTT
1 ATTATGAAGCATCTTAAAGTTTT
4138961 TTCTAAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.32, C:0.11, G:0.13, T:0.45
Consensus pattern (24 bp):
ATTATGAAGCATCTTAAAGTTTTC
Found at i:4143061 original size:20 final size:21
Alignment explanation
Indices: 4143038--4143077 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
4143028 GAAAAAGAAA
4143038 ATTT-AAAATTTAAAAATATT
1 ATTTAAAAATTTAAAAATATT
*
4143058 ATTTAAAAATTTATAAATAT
1 ATTTAAAAATTTAAAAATAT
4143078 CTATCTATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
ATTTAAAAATTTAAAAATATT
Found at i:4146304 original size:20 final size:19
Alignment explanation
Indices: 4146242--4146309 Score: 68
Period size: 20 Copynumber: 3.5 Consensus size: 19
4146232 TTTTAATATT
*
4146242 TAAAA-ATTCTAAAAAATA
1 TAAAATATTATAAAAAATA
*
4146260 TTAACAATATTA-AAAGAAGTA
1 -TAA-AATATTATAAA-AAATA
4146281 TAAAATATTATAAAAACATA
1 TAAAATATTATAAAAA-ATA
4146301 TAAAATATT
1 TAAAATATT
4146310 TTTTAATTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
19 12 0.29
20 22 0.54
21 7 0.17
ACGTcount: A:0.62, C:0.04, G:0.03, T:0.31
Consensus pattern (19 bp):
TAAAATATTATAAAAAATA
Found at i:4153440 original size:26 final size:25
Alignment explanation
Indices: 4153364--4153440 Score: 91
Period size: 25 Copynumber: 3.0 Consensus size: 25
4153354 TGAACTTGAC
* *
4153364 ATTTTTTTTTCTAATTTGGTATTTA
1 ATTTTTTTTTCCAATTTGGTATCTA
* * *
4153389 ATTTTTTTATCCAATTTAGTACCTA
1 ATTTTTTTTTCCAATTTGGTATCTA
*
4153414 ATTTTTTTTGTCCAATTTGGCATCTA
1 ATTTTTTTT-TCCAATTTGGTATCTA
4153440 A
1 A
4153441 ACTTAGCCCA
Statistics
Matches: 42, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
25 28 0.67
26 14 0.33
ACGTcount: A:0.23, C:0.12, G:0.08, T:0.57
Consensus pattern (25 bp):
ATTTTTTTTTCCAATTTGGTATCTA
Found at i:4164530 original size:34 final size:34
Alignment explanation
Indices: 4164491--4164567 Score: 129
Period size: 34 Copynumber: 2.3 Consensus size: 34
4164481 CAATCTCATT
*
4164491 ATTTCTTGTAGGGAATTTC-TCATGTTCACACATC
1 ATTTCTTGTAGGGAATCTCTTC-TGTTCACACATC
4164525 ATTTCTTGTAGGGAATCTCTTCTGTTCACACATC
1 ATTTCTTGTAGGGAATCTCTTCTGTTCACACATC
4164559 ATTTCTTGT
1 ATTTCTTGT
4164568 GTCATTTCTT
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
34 39 0.95
35 2 0.05
ACGTcount: A:0.21, C:0.21, G:0.14, T:0.44
Consensus pattern (34 bp):
ATTTCTTGTAGGGAATCTCTTCTGTTCACACATC
Found at i:4175083 original size:15 final size:16
Alignment explanation
Indices: 4175056--4175085 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
4175046 GTTGAACTAA
4175056 TAAAAATTCGATTAAG
1 TAAAAATTCGATTAAG
4175072 TAAAAATT-GATTAA
1 TAAAAATTCGATTAA
4175086 AATCTGTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.53, C:0.03, G:0.10, T:0.33
Consensus pattern (16 bp):
TAAAAATTCGATTAAG
Found at i:4190460 original size:29 final size:30
Alignment explanation
Indices: 4190418--4190476 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 30
4190408 CTATGTTTAA
4190418 TGTGCAATTGTATACAT-GAATTTTGATTT
1 TGTGCAATTGTATACATGGAATTTTGATTT
* *
4190447 TGTGTAATTTTATACATGGAATTTTGATTT
1 TGTGCAATTGTATACATGGAATTTTGATTT
4190477 GATCTAATTC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 15 0.56
30 12 0.44
ACGTcount: A:0.27, C:0.05, G:0.17, T:0.51
Consensus pattern (30 bp):
TGTGCAATTGTATACATGGAATTTTGATTT
Done.