Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67659327
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 461372 characters in sequence are not A, C, G, or T
File 134 of 216
Found at i:42617658 original size:29 final size:29
Alignment explanation
Indices: 42617626--42617831 Score: 182
Period size: 29 Copynumber: 7.1 Consensus size: 29
42617616 AAAGAAAGCA
* * *
42617626 TTTGTGGCGATCTTTGTTAAATGGAAGTC
1 TTTGTGGAGATCTCTATTAAATGGAAGTC
* *
42617655 TTTGTGGCGATCTGTATTAAATGGAA-TAC
1 TTTGTGGAGATCTCTATTAAATGGAAGT-C
* * * * *
42617684 CTTGTGGTGATCTTTGTTAAATGAAAAG-C
1 TTTGTGGAGATCTCTATTAAATG-GAAGTC
* * * * * **
42617713 TTTATAGTGATCTCTGTTAAATAGAAACC
1 TTTGTGGAGATCTCTATTAAATGGAAGTC
* *
42617742 TTTATGGAGATCTCTATTAAATGAAAGTC
1 TTTGTGGAGATCTCTATTAAATGGAAGTC
* *
42617771 TTTTTGGAGATCTCTATTAAATGAAAGTC
1 TTTGTGGAGATCTCTATTAAATGGAAGTC
*
42617800 TTTGTGGAGATCTCTATTAAATGGAAGCC
1 TTTGTGGAGATCTCTATTAAATGGAAGTC
42617829 TTT
1 TTT
42617832 TTAGTGATCT
Statistics
Matches: 148, Mismatches: 25, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
28 3 0.02
29 143 0.97
30 2 0.01
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (29 bp):
TTTGTGGAGATCTCTATTAAATGGAAGTC
Found at i:42617832 original size:58 final size:57
Alignment explanation
Indices: 42617626--42617851 Score: 202
Period size: 58 Copynumber: 3.9 Consensus size: 57
42617616 AAAGAAAGCA
* * * * * * * * *
42617626 TTTGTGGCGATCTTTGTTAAATGGAAGTCTTTGTGGCGATCTGTATTAAATGGAATAC
1 TTTGTGGAGATCTCTATTAAATGAAAGTCTTTTTAGTGATCTCTATTAAATGAAAT-C
* * * * * * *
42617684 CTTGTGGTGATCTTTGTTAAATGAAAAG-CTTTATAGTGATCTCTGTTAAATAGAAACC
1 TTTGTGGAGATCTCTATTAAATG-AAAGTCTTTTTAGTGATCTCTATTAAAT-GAAATC
* * *
42617742 TTTATGGAGATCTCTATTAAATGAAAGTCTTTTTGGAGATCTCTATTAAATGAAAGTC
1 TTTGTGGAGATCTCTATTAAATGAAAGTCTTTTTAGTGATCTCTATTAAATGAAA-TC
* * * *
42617800 TTTGTGGAGATCTCTATTAAATGGAAGCCTTTTTAGTGATCTATGTTAAATG
1 TTTGTGGAGATCTCTATTAAATGAAAGTCTTTTTAGTGATCTCTATTAAATG
42617852 GATGCCCTTG
Statistics
Matches: 137, Mismatches: 27, Indels: 8
0.80 0.16 0.05
Matches are distributed among these distances:
57 8 0.06
58 123 0.90
59 6 0.04
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.40
Consensus pattern (57 bp):
TTTGTGGAGATCTCTATTAAATGAAAGTCTTTTTAGTGATCTCTATTAAATGAAATC
Found at i:42617840 original size:29 final size:29
Alignment explanation
Indices: 42617621--42617864 Score: 177
Period size: 29 Copynumber: 8.4 Consensus size: 29
42617611 TTCTAAAAGA
* * * *
42617621 AAGCATTTGTGGCGATCTTTGTTAAATGG
1 AAGCCTTTGTGGAGATCTCTATTAAATGG
* * *
42617650 AAGTCTTTGTGGCGATCTGTATTAAATGG
1 AAGCCTTTGTGGAGATCTCTATTAAATGG
* * * * *
42617679 AATACC-TTGTGGTGATCTTTGTTAAATGAA
1 AA-GCCTTTGTGGAGATCTCTATTAAATG-G
* * * * *
42617709 AAG-CTTTATAGTGATCTCTGTTAAATAG
1 AAGCCTTTGTGGAGATCTCTATTAAATGG
* * *
42617737 AAACCTTTATGGAGATCTCTATTAAATGA
1 AAGCCTTTGTGGAGATCTCTATTAAATGG
* * *
42617766 AAGTCTTTTTGGAGATCTCTATTAAATGA
1 AAGCCTTTGTGGAGATCTCTATTAAATGG
*
42617795 AAGTCTTTGTGGAGATCTCTATTAAATGG
1 AAGCCTTTGTGGAGATCTCTATTAAATGG
* * * * *
42617824 AAGCCTTTTTAGTGATCTATGTTAAATGG
1 AAGCCTTTGTGGAGATCTCTATTAAATGG
* *
42617853 ATGCCCTTGTGG
1 AAGCCTTTGTGG
42617865 CTATCTTAAC
Statistics
Matches: 174, Mismatches: 37, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
28 3 0.02
29 168 0.97
30 3 0.02
ACGTcount: A:0.28, C:0.11, G:0.22, T:0.39
Consensus pattern (29 bp):
AAGCCTTTGTGGAGATCTCTATTAAATGG
Found at i:42617841 original size:87 final size:87
Alignment explanation
Indices: 42617620--42617851 Score: 216
Period size: 87 Copynumber: 2.7 Consensus size: 87
42617610 TTTCTAAAAG
* * * * * * *
42617620 AAAGCATTTGTGGCGATCTTTGTTAAATGGAAGTCTTTGTGGCGATCTGTATTAAATGGAATACC
1 AAAGC-TTTGTGGAGATCTCTGTTAAATGGAAGCCTTTATGGAGATCTATATTAAATGAAATACC
* * *
42617685 TTGTGGTGATCTTTGTTAAATGA
65 TTGTGGAGATCTCTATTAAATGA
* * * * * * *
42617708 AAAGCTTTATAGTGATCTCTGTTAAATAGAAACCTTTATGGAGATCTCTATTAAATGAAAGT-CT
1 AAAGCTTTGTGGAGATCTCTGTTAAATGGAAGCCTTTATGGAGATCTATATTAAATGAAA-TACC
*
42617772 TTTTGGAGATCTCTATTAAATG-
65 TTGTGGAGATCTCTATTAAATGA
* * * * *
42617794 AAAGTCTTTGTGGAGATCTCTATTAAATGGAAGCCTTTTTAGTGATCTATGTTAAATG
1 AAAG-CTTTGTGGAGATCTCTGTTAAATGGAAGCCTTTATGGAGATCTATATTAAATG
42617852 GATGCCCTTG
Statistics
Matches: 115, Mismatches: 27, Indels: 5
0.78 0.18 0.03
Matches are distributed among these distances:
86 4 0.03
87 105 0.91
88 6 0.05
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.39
Consensus pattern (87 bp):
AAAGCTTTGTGGAGATCTCTGTTAAATGGAAGCCTTTATGGAGATCTATATTAAATGAAATACCT
TGTGGAGATCTCTATTAAATGA
Found at i:42625650 original size:93 final size:94
Alignment explanation
Indices: 42625521--42625723 Score: 264
Period size: 93 Copynumber: 2.2 Consensus size: 94
42625511 CGAACAGCAA
* *
42625521 GTTGATTTAAGATCATAGCCTAAGTTTAATCGATTTAATATCATTAACAATTTTC-TGAGTTAGT
1 GTTGATTTAAGATCATAGCCTAAGTTTAATCGATTTAATATCATGAACAATTTTCTTGAGATAGT
* * **
42625585 TGATTCAATTTCGCTACTGTAAATAGCTC
66 TGATTCAATATCACTACTCCAAATAGCTC
* * * **
42625614 GTTGATTTAATATCGTAGCCTAAGTTTATTTTATTTAATATCATGAACAATTTTCTTTGAGATAG
1 GTTGATTTAAGATCATAGCCTAAGTTTAATCGATTTAATATCATGAACAATTTTC-TTGAGATAG
*
42625679 TTGATTCAATATCACTACTCCAAATAGCTT
65 TTGATTCAATATCACTACTCCAAATAGCTC
* *
42625709 GCTAATTTAAGATCA
1 GTTGATTTAAGATCA
42625724 CGGTTAATAA
Statistics
Matches: 92, Mismatches: 16, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
93 49 0.53
95 43 0.47
ACGTcount: A:0.32, C:0.14, G:0.13, T:0.41
Consensus pattern (94 bp):
GTTGATTTAAGATCATAGCCTAAGTTTAATCGATTTAATATCATGAACAATTTTCTTGAGATAGT
TGATTCAATATCACTACTCCAAATAGCTC
Found at i:42625916 original size:218 final size:218
Alignment explanation
Indices: 42625609--42626066 Score: 781
Period size: 218 Copynumber: 2.1 Consensus size: 218
42625599 TACTGTAAAT
* * * * **
42625609 AGCTCGTTGATTTAATATCGTAGCCTAAGTTTATTTTATTTAATATCATGAACAATTTTCTTTGA
1 AGCTCGTTGATTTAAGATCGCAACCTAAGTTCATTCGATTTAATATCATGAACAATTTTCTTTGA
* *
42625674 GATAGTTGATTCAATATCACTACTCCAAATAGCTTGCTAATTTAAGATCACGGTTAATAATGTTA
66 GATAGTTGATTCAATATCACTACTCCAAATAGCTTGCAAATTAAAGATCACGGTTAATAATGTTA
42625739 AGGCCCACTGATTTAGTCTAAGTTCATTTGATTTAATATTATGAACAATTTTCTTTGAGATAGCT
131 AGGCCCACTGATTTAGTCTAAGTTCATTTGATTTAATATTATGAACAATTTTCTTTGAGATAGCT
42625804 AATTTAATATCACTACGCCATAG
196 AATTTAATATCACTACGCCATAG
*
42625827 AGCTCGTTGATTTAAGATTGCAACCTAAGTTCATTCGATTTAATATCATGAACAATTTTCTTTGA
1 AGCTCGTTGATTTAAGATCGCAACCTAAGTTCATTCGATTTAATATCATGAACAATTTTCTTTGA
42625892 GATAGTTGATTCAATATCACTACTCCAAATAGCTTGCAAATTAAAGATCACGGTTAATAATGTTA
66 GATAGTTGATTCAATATCACTACTCCAAATAGCTTGCAAATTAAAGATCACGGTTAATAATGTTA
42625957 AGGCCCACTGATTTAGTCTAAGTTCATTTGATTTAATATTATGAACAATTTTCTTTGAGATAGCT
131 AGGCCCACTGATTTAGTCTAAGTTCATTTGATTTAATATTATGAACAATTTTCTTTGAGATAGCT
* * *
42626022 AATTTAATATCACTACTCCAAAC
196 AATTTAATATCACTACGCCATAG
* * *
42626045 AACTCGTTCATTTAATATCGCA
1 AGCTCGTTGATTTAAGATCGCA
42626067 GCAGATATCA
Statistics
Matches: 224, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
218 224 1.00
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.38
Consensus pattern (218 bp):
AGCTCGTTGATTTAAGATCGCAACCTAAGTTCATTCGATTTAATATCATGAACAATTTTCTTTGA
GATAGTTGATTCAATATCACTACTCCAAATAGCTTGCAAATTAAAGATCACGGTTAATAATGTTA
AGGCCCACTGATTTAGTCTAAGTTCATTTGATTTAATATTATGAACAATTTTCTTTGAGATAGCT
AATTTAATATCACTACGCCATAG
Found at i:42625939 original size:95 final size:95
Alignment explanation
Indices: 42625756--42625939 Score: 251
Period size: 95 Copynumber: 1.9 Consensus size: 95
42625746 CTGATTTAGT
* * *
42625756 CTAAGTTCATTTGATTTAATATTATGAACAATTTTCTTTGAGATAGCTAATTTAATATCACTACG
1 CTAAGTTCATTCGATTTAATATCATGAACAATTTTCTTTGAGATAGCTAATTCAATATCACTACG
* *** *
42625821 CCATAGAGCTCGTTGATTTAAGATTGCAAC
66 CCAAAGAGCTCGCAAATTAAAGATTGCAAC
* * *
42625851 CTAAGTTCATTCGATTTAATATCATGAACAATTTTCTTTGAGATAGTTGATTCAATATCACTACT
1 CTAAGTTCATTCGATTTAATATCATGAACAATTTTCTTTGAGATAGCTAATTCAATATCACTACG
* *
42625916 CCAAATAGCTTGCAAATTAAAGAT
66 CCAAAGAGCTCGCAAATTAAAGAT
42625940 CACGGTTAAT
Statistics
Matches: 76, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
95 76 1.00
ACGTcount: A:0.34, C:0.15, G:0.12, T:0.38
Consensus pattern (95 bp):
CTAAGTTCATTCGATTTAATATCATGAACAATTTTCTTTGAGATAGCTAATTCAATATCACTACG
CCAAAGAGCTCGCAAATTAAAGATTGCAAC
Found at i:42626208 original size:95 final size:95
Alignment explanation
Indices: 42626088--42626305 Score: 296
Period size: 95 Copynumber: 2.3 Consensus size: 95
42626078 TAAGAATCGT
* * * *
42626088 TGATTTAAGATCACAGCCTATGTTCATTAAATTTAATATCATGAACAATTTTTTTTGAGTTAGCT
1 TGATTTAAGATCGCAGCCTAAGTTCATTAAATTTAATATCATGAAAAATTTTCTTTGAGTTAGCT
42626153 GAATCAATATCGCTACTCTAAATAGCTCTG-
66 GAATCAATATCGCTACTCTAAATAGCT-TGC
* ** * *
42626183 TGATTTAAGATCGCAACCTAAGTTCATTCGATTTGATATCGTGAAAAATTTTCTTTGAGTTAGCT
1 TGATTTAAGATCGCAGCCTAAGTTCATTAAATTTAATATCATGAAAAATTTTCTTTGAGTTAGCT
* *
42626248 GATTCAATATCGTTACTCTAAATAGCTTGC
66 GAATCAATATCGCTACTCTAAATAGCTTGC
*
42626278 TAATTTAAGATCGCAGCCT-AGTTTCATT
1 TGATTTAAGATCGCAGCCTAAG-TTCATT
42626306 TGATTTGACA
Statistics
Matches: 108, Mismatches: 13, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
94 4 0.04
95 104 0.96
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.39
Consensus pattern (95 bp):
TGATTTAAGATCGCAGCCTAAGTTCATTAAATTTAATATCATGAAAAATTTTCTTTGAGTTAGCT
GAATCAATATCGCTACTCTAAATAGCTTGC
Found at i:42634700 original size:27 final size:27
Alignment explanation
Indices: 42634652--42634722 Score: 117
Period size: 27 Copynumber: 2.6 Consensus size: 27
42634642 TGCAATGTGG
42634652 TAAG-TTTAATTCCATTATACGGGCCTAT
1 TAAGCTTTAATT-C-TTATACGGGCCTAT
42634680 TAAGCTTTAATTCTTATACGGGCCTAT
1 TAAGCTTTAATTCTTATACGGGCCTAT
42634707 TAAGCTTTAATTCTTA
1 TAAGCTTTAATTCTTA
42634723 CTCGGTTTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
27 30 0.71
28 5 0.12
29 7 0.17
ACGTcount: A:0.28, C:0.17, G:0.13, T:0.42
Consensus pattern (27 bp):
TAAGCTTTAATTCTTATACGGGCCTAT
Found at i:42649038 original size:77 final size:77
Alignment explanation
Indices: 42648947--42649096 Score: 200
Period size: 77 Copynumber: 1.9 Consensus size: 77
42648937 ATGATTAAAC
*
42648947 TTAATATTAAATTAATATAATACTTATCTACAAGATAAATATTAA-ATTAAATTAA-ATT-AAA-
1 TTAATATTAAATTAATAAAATA-TTA--T-CAAGATAAATATTAACATTAAATTAATATTAAAAC
*
42649008 TATTAATATAATCACT
62 TATTAAAATAATCACT
* *
42649024 TTAATATTAAATTAATAAAATATTATCAAGATAAATATTAACTTTAATTTAATATTAAAACTATT
1 TTAATATTAAATTAATAAAATATTATCAAGATAAATATTAACATTAAATTAATATTAAAACTATT
42649089 AAAATAAT
66 AAAATAAT
42649097 ATCATTTTTG
Statistics
Matches: 65, Mismatches: 4, Indels: 8
0.84 0.05 0.10
Matches are distributed among these distances:
73 15 0.23
74 9 0.14
75 3 0.05
76 6 0.09
77 32 0.49
ACGTcount: A:0.53, C:0.05, G:0.01, T:0.41
Consensus pattern (77 bp):
TTAATATTAAATTAATAAAATATTATCAAGATAAATATTAACATTAAATTAATATTAAAACTATT
AAAATAATCACT
Found at i:42651062 original size:16 final size:16
Alignment explanation
Indices: 42651030--42651063 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
42651020 CTAATATCCA
*
42651030 ATTATCATAATTGCAC
1 ATTATCATAATTACAC
*
42651046 ATTATCATATTTACAC
1 ATTATCATAATTACAC
42651062 AT
1 AT
42651064 ATATTTATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.18, G:0.03, T:0.41
Consensus pattern (16 bp):
ATTATCATAATTACAC
Found at i:42651116 original size:19 final size:18
Alignment explanation
Indices: 42651064--42651117 Score: 56
Period size: 18 Copynumber: 3.0 Consensus size: 18
42651054 ATTTACACAT
*
42651064 ATATTTATTTCAATTCAA
1 ATATTTATATCAATTCAA
* * *
42651082 ATAATCA-ATAAATTCATA
1 ATATTTATATCAATTCA-A
42651100 ATATTTATATCAATTCAA
1 ATATTTATATCAATTCAA
42651118 TCCATTTCAA
Statistics
Matches: 27, Mismatches: 7, Indels: 4
0.71 0.18 0.11
Matches are distributed among these distances:
17 7 0.26
18 12 0.44
19 8 0.30
ACGTcount: A:0.46, C:0.11, G:0.00, T:0.43
Consensus pattern (18 bp):
ATATTTATATCAATTCAA
Found at i:42652484 original size:19 final size:20
Alignment explanation
Indices: 42652462--42652500 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
42652452 ATTTTAATTA
*
42652462 ATTTGATC-AATTTAATTTT
1 ATTTGATCAAAATTAATTTT
42652481 ATTTGATCAAAATTAATTTT
1 ATTTGATCAAAATTAATTTT
42652501 CCTAAAAATC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.36, C:0.05, G:0.05, T:0.54
Consensus pattern (20 bp):
ATTTGATCAAAATTAATTTT
Found at i:42653174 original size:12 final size:12
Alignment explanation
Indices: 42653157--42653181 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
42653147 GGTGTTCATT
42653157 CGGTTAACCGAC
1 CGGTTAACCGAC
42653169 CGGTTAACCGAC
1 CGGTTAACCGAC
42653181 C
1 C
42653182 CGAAATAACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.36, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTTAACCGAC
Found at i:42653333 original size:9 final size:9
Alignment explanation
Indices: 42653321--42653381 Score: 95
Period size: 9 Copynumber: 6.8 Consensus size: 9
42653311 AAAAATTAAT
42653321 CGAATTACC
1 CGAATTACC
*
42653330 CGAATTAAC
1 CGAATTACC
*
42653339 CTAATTACC
1 CGAATTACC
42653348 CGAATTACC
1 CGAATTACC
*
42653357 CGAATTAAC
1 CGAATTACC
42653366 CGAATTACC
1 CGAATTACC
42653375 CGAATTA
1 CGAATTA
42653382 ATCAAATGAA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 46 1.00
ACGTcount: A:0.38, C:0.28, G:0.10, T:0.25
Consensus pattern (9 bp):
CGAATTACC
Found at i:42653351 original size:27 final size:27
Alignment explanation
Indices: 42653321--42653381 Score: 113
Period size: 27 Copynumber: 2.3 Consensus size: 27
42653311 AAAAATTAAT
*
42653321 CGAATTACCCGAATTAACCTAATTACC
1 CGAATTACCCGAATTAACCGAATTACC
42653348 CGAATTACCCGAATTAACCGAATTACC
1 CGAATTACCCGAATTAACCGAATTACC
42653375 CGAATTA
1 CGAATTA
42653382 ATCAAATGAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.38, C:0.28, G:0.10, T:0.25
Consensus pattern (27 bp):
CGAATTACCCGAATTAACCGAATTACC
Found at i:42653382 original size:18 final size:18
Alignment explanation
Indices: 42653314--42653381 Score: 91
Period size: 18 Copynumber: 3.8 Consensus size: 18
42653304 TTTGGTTAAA
*
42653314 AATTAATCGAATTACCCG
1 AATTAACCGAATTACCCG
*
42653332 AATTAACCTAATTACCCG
1 AATTAACCGAATTACCCG
* *
42653350 AATTACCCGAATTAACCG
1 AATTAACCGAATTACCCG
*
42653368 AATTACCCGAATTA
1 AATTAACCGAATTA
42653382 ATCAAATGAA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 45 1.00
ACGTcount: A:0.40, C:0.25, G:0.09, T:0.26
Consensus pattern (18 bp):
AATTAACCGAATTACCCG
Found at i:42653393 original size:27 final size:27
Alignment explanation
Indices: 42653321--42653398 Score: 75
Period size: 27 Copynumber: 2.9 Consensus size: 27
42653311 AAAAATTAAT
* * * *
42653321 CGAATTACCCGAATTAACCTAATTACC
1 CGAATTAACCAAATGAACCAAATTACC
* * * *
42653348 CGAATTACCCGAATTAACCGAATTACC
1 CGAATTAACCAAATGAACCAAATTACC
*
42653375 CGAATTAATCAAATGAACCAAATT
1 CGAATTAACCAAATGAACCAAATT
42653399 GAATCACTAC
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.41, C:0.26, G:0.09, T:0.24
Consensus pattern (27 bp):
CGAATTAACCAAATGAACCAAATTACC
Found at i:42653526 original size:18 final size:18
Alignment explanation
Indices: 42653503--42653537 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
42653493 TAATTTTATG
42653503 ATTGGGTTGGGTTGGGTA
1 ATTGGGTTGGGTTGGGTA
42653521 ATTGGGTTGGGTTGGGT
1 ATTGGGTTGGGTTGGGT
42653538 TGAATACTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.09, C:0.00, G:0.51, T:0.40
Consensus pattern (18 bp):
ATTGGGTTGGGTTGGGTA
Found at i:42653548 original size:23 final size:23
Alignment explanation
Indices: 42653504--42653551 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
42653494 AATTTTATGA
**
42653504 TTGGGTTGGGTTGGGTAATTGGG
1 TTGGGTTGGGTTGAATAATTGGG
*
42653527 TTGGGTTGGGTTGAATACTTGGG
1 TTGGGTTGGGTTGAATAATTGGG
42653550 TT
1 TT
42653552 TAGATTGGGT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.10, C:0.02, G:0.46, T:0.42
Consensus pattern (23 bp):
TTGGGTTGGGTTGAATAATTGGG
Found at i:42660886 original size:16 final size:15
Alignment explanation
Indices: 42660851--42660884 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
42660841 ATTTTAAAGG
*
42660851 AAAATTAATATTGTA
1 AAAATGAATATTGTA
42660866 AAAATGAATATTGTA
1 AAAATGAATATTGTA
42660881 AAAA
1 AAAA
42660885 ATCTTGGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.32
Consensus pattern (15 bp):
AAAATGAATATTGTA
Found at i:42669479 original size:100 final size:100
Alignment explanation
Indices: 42669303--42669507 Score: 392
Period size: 100 Copynumber: 2.0 Consensus size: 100
42669293 CCTTCCCCAG
42669303 TTCTTTTGAAAATCAATACATTCTCTTAGCAGTGCACTATGTATCGAAATGGGTAGAAGCAGTGG
1 TTCTTTTGAAAATCAATACATTCTCTTAGCAGTGCACTATGTATCGAAATGGGTAGAAGCAGTGG
*
42669368 TGTTACTAGCCAACGACACTAAATTTATGGTTAGA
66 TGTTACCAGCCAACGACACTAAATTTATGGTTAGA
*
42669403 TTCTTTTGCAAATCAATACATTCTCTTAGCAGTGCACTATGTATCGAAATGGGTAGAAGCAGTGG
1 TTCTTTTGAAAATCAATACATTCTCTTAGCAGTGCACTATGTATCGAAATGGGTAGAAGCAGTGG
42669468 TGTTACCAGCCAACGACACTAAATTTATGGTTAGA
66 TGTTACCAGCCAACGACACTAAATTTATGGTTAGA
42669503 TTCTT
1 TTCTT
42669508 ACGTAATAAT
Statistics
Matches: 103, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
100 103 1.00
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.33
Consensus pattern (100 bp):
TTCTTTTGAAAATCAATACATTCTCTTAGCAGTGCACTATGTATCGAAATGGGTAGAAGCAGTGG
TGTTACCAGCCAACGACACTAAATTTATGGTTAGA
Found at i:42671399 original size:30 final size:32
Alignment explanation
Indices: 42671330--42671399 Score: 90
Period size: 31 Copynumber: 2.2 Consensus size: 32
42671320 ATTTAAAAAA
*
42671330 TCAATTGTGACTCTTTTTTAAAAAGTTGATGGT
1 TCAATT-TGACTCTTTTTTAAAAAGTTGATGGG
* *
42671363 TAAATTTGACTC-TTTTTAAAAGGTTGA-GGG
1 TCAATTTGACTCTTTTTTAAAAAGTTGATGGG
42671393 TCAATTT
1 TCAATTT
42671400 TAGCTCAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
30 8 0.24
31 14 0.42
32 6 0.18
33 5 0.15
ACGTcount: A:0.29, C:0.09, G:0.19, T:0.44
Consensus pattern (32 bp):
TCAATTTGACTCTTTTTTAAAAAGTTGATGGG
Found at i:42672720 original size:39 final size:41
Alignment explanation
Indices: 42672677--42672788 Score: 167
Period size: 40 Copynumber: 2.8 Consensus size: 41
42672667 GCGTTTGGAC
* *
42672677 AAAAAACGCCGCTAAAAATCAAGCATTAGCGGCGCTT-TTA
1 AAAAAACGCCACTAAAAATCGAGCATTAGCGGCGCTTCTTA
* *
42672717 AAAAAACGCCACTAAAGATCGAGTATTAGCGGCGCTTCTT-
1 AAAAAACGCCACTAAAAATCGAGCATTAGCGGCGCTTCTTA
42672757 AAAAAACGCCACTAAAAAT-GAGCATTAGCGGC
1 AAAAAACGCCACTAAAAATCGAGCATTAGCGGC
42672789 TTTTTCCAAA
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
39 12 0.18
40 51 0.78
41 2 0.03
ACGTcount: A:0.40, C:0.22, G:0.19, T:0.19
Consensus pattern (41 bp):
AAAAAACGCCACTAAAAATCGAGCATTAGCGGCGCTTCTTA
Found at i:42672800 original size:39 final size:39
Alignment explanation
Indices: 42672676--42672800 Score: 137
Period size: 40 Copynumber: 3.2 Consensus size: 39
42672666 GGCGTTTGGA
* * *
42672676 CAAAAAACGCCGCTAAAAATCAAGCATTAGCGGCGCTTTT
1 CAAAAAACGCCACTAAAAATCGAGCATTAGCGGC-TTTTT
* * * *
42672716 AAAAAAACGCCACTAAAGATCGAGTATTAGCGGCGCTTCTT
1 CAAAAAACGCCACTAAAAATCGAGCATTAGC-G-GCTTTTT
42672757 -AAAAAACGCCACTAAAAAT-GAGCATTAGCGGCTTTTT
1 CAAAAAACGCCACTAAAAATCGAGCATTAGCGGCTTTTT
*
42672794 CCAAAAA
1 CAAAAAA
42672801 GCGTCGCAAA
Statistics
Matches: 71, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
37 6 0.08
38 6 0.08
39 9 0.13
40 44 0.62
41 4 0.06
42 2 0.03
ACGTcount: A:0.40, C:0.22, G:0.17, T:0.21
Consensus pattern (39 bp):
CAAAAAACGCCACTAAAAATCGAGCATTAGCGGCTTTTT
Found at i:42673513 original size:23 final size:23
Alignment explanation
Indices: 42673487--42673538 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 23
42673477 TAAAATTGAA
*
42673487 CATACTCATCTCAGACATGCCTT
1 CATACTCATATCAGACATGCCTT
* * *
42673510 CATACCCATATCTGACATGTCTT
1 CATACTCATATCAGACATGCCTT
*
42673533 TATACT
1 CATACT
42673539 GACACCTAAC
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.27, C:0.31, G:0.08, T:0.35
Consensus pattern (23 bp):
CATACTCATATCAGACATGCCTT
Found at i:42678496 original size:20 final size:20
Alignment explanation
Indices: 42678467--42678506 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
42678457 TTCACCTCAT
*
42678467 GCATCGCATCATATGCATTA
1 GCATCACATCATATGCATTA
42678487 GCATCACATCATATGCATTA
1 GCATCACATCATATGCATTA
42678507 AAGACCTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.30
Consensus pattern (20 bp):
GCATCACATCATATGCATTA
Found at i:42686878 original size:133 final size:133
Alignment explanation
Indices: 42686605--42686905 Score: 327
Period size: 133 Copynumber: 2.3 Consensus size: 133
42686595 ATGTATTGGC
* * * * *
42686605 GTGAAGTTGATCAGAGATACTAGATCTTACCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAG
1 GTGAAGTAGATCAAAGATAC-AGATCTTATCTCCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
* * ** * *
42686670 CAGATCTCGTTTTCATGTACCGGCGTGAAGCAGATCAAAGATAGTAGGTCCTGTCCTCCTATATC
65 CAAATCTCGTCTTCATGTACCGGCGTGAAGCAGATCAAAGATACCAGATCCTGTCCTCCCATATC
42686735 GGTA
130 GGTA
* * * * * * * *
42686739 GCGAAGTGGATCAAATATACAGATTTTATCTCCCCATACTGGTGGTGGAGTAGATCGAAGAAAAT
1 GTGAAGTAGATCAAAGATACAGATCTTATCTCCCCATACTGGTGGTGAAGCAGATCAAAGAAAAC
* * * * *
42686804 AAATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATACCAGATCTTGTCTTCCCATA-CT
66 AAATCTCGTCTTCATGTACCGGCGTGAAGCAGATCAAAGATACCAGATCCTGTCCTCCCATATC-
*
42686868 GGTG
130 GGTA
*
42686872 GTGAAGTAGATCGAAGATACA-AGTCTTATCTCCC
1 GTGAAGTAGATCAAAGATACAGA-TCTTATCTCCC
42686906 TGAAGTTGCA
Statistics
Matches: 136, Mismatches: 29, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
132 2 0.01
133 118 0.87
134 16 0.12
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (133 bp):
GTGAAGTAGATCAAAGATACAGATCTTATCTCCCCATACTGGTGGTGAAGCAGATCAAAGAAAAC
AAATCTCGTCTTCATGTACCGGCGTGAAGCAGATCAAAGATACCAGATCCTGTCCTCCCATATCG
GTA
Found at i:42690317 original size:43 final size:43
Alignment explanation
Indices: 42690223--42690406 Score: 226
Period size: 43 Copynumber: 4.3 Consensus size: 43
42690213 AGATTATGTT
* ** * * * *
42690223 TTTAGCGGCGTTTTTGCTAGAAGCGCCGCTAAAGAT-TTGTTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCGTGGTC
* *
42690265 TTTAGCGGCGCTTGTGGGAAAAGCGCCGCAAAAGGTCGTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCGTGGTC
* * * *
42690308 ATTAGCGGCGTTTGTGGGGAAAGAGCCTCTAAAGGTCGTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCGTGGTC
* *
42690351 TTTAGCGGCGTTTGTGGTAAAAGCGCCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCGTGGTC
42690394 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
42690407 TTTCCGGCGC
Statistics
Matches: 120, Mismatches: 21, Indels: 1
0.85 0.15 0.01
Matches are distributed among these distances:
42 29 0.24
43 91 0.76
ACGTcount: A:0.20, C:0.18, G:0.33, T:0.29
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCGTGGTC
Found at i:42693397 original size:42 final size:42
Alignment explanation
Indices: 42693349--42693485 Score: 157
Period size: 42 Copynumber: 3.3 Consensus size: 42
42693339 AAAGCTAAAT
* *
42693349 AGAAGCTCATGAGAGCTAAACGAAAACCCATAAGGGTTGAAC
1 AGAAGCTCATAAGAGCTGAACGAAAACCCATAAGGGTTGAAC
* * * * *
42693391 GGAAGCTCGTAAGATCTGAACGGAAACCCATAAGGGTTAAAC
1 AGAAGCTCATAAGAGCTGAACGAAAACCCATAAGGGTTGAAC
* * * * *
42693433 TGAAGCTCAAAAGAGTTGAACGAAAACCCATTAGGTTTGAAC
1 AGAAGCTCATAAGAGCTGAACGAAAACCCATAAGGGTTGAAC
*
42693475 AGAAACTCATA
1 AGAAGCTCATA
42693486 TGAGTTAACA
Statistics
Matches: 76, Mismatches: 19, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
42 76 1.00
ACGTcount: A:0.42, C:0.18, G:0.23, T:0.18
Consensus pattern (42 bp):
AGAAGCTCATAAGAGCTGAACGAAAACCCATAAGGGTTGAAC
Found at i:42693403 original size:21 final size:21
Alignment explanation
Indices: 42693377--42693507 Score: 68
Period size: 21 Copynumber: 6.3 Consensus size: 21
42693367 AACGAAAACC
42693377 CATAAGGGTTGAACGGAAGCT
1 CATAAGGGTTGAACGGAAGCT
* * * *
42693398 CGTAA-GATCTGAACGGAAACC
1 CATAAGGGT-TGAACGGAAGCT
* *
42693419 CATAAGGGTTAAACTGAAGCT
1 CATAAGGGTTGAACGGAAGCT
* * * * *
42693440 CAAAAGAGTTGAACGAAAACC
1 CATAAGGGTTGAACGGAAGCT
* * * *
42693461 CATTAGGTTTGAACAGAAACT
1 CATAAGGGTTGAACGGAAGCT
* * *
42693482 CATATGAGTT-AACAGAAGCT
1 CATAAGGGTTGAACGGAAGCT
*
42693502 CGTAAG
1 CATAAG
42693508 AGCTAAACGG
Statistics
Matches: 77, Mismatches: 31, Indels: 5
0.68 0.27 0.04
Matches are distributed among these distances:
20 15 0.19
21 60 0.78
22 2 0.03
ACGTcount: A:0.40, C:0.17, G:0.24, T:0.20
Consensus pattern (21 bp):
CATAAGGGTTGAACGGAAGCT
Found at i:42693602 original size:24 final size:24
Alignment explanation
Indices: 42693570--42693641 Score: 92
Period size: 24 Copynumber: 3.0 Consensus size: 24
42693560 TACTTGGGTA
* *
42693570 ATTTGTCATCAATTCATCATTTTC
1 ATTTATCATCAATTCATCCTTTTC
42693594 ATTTATCATCAATTCATCCTTTGT-
1 ATTTATCATCAATTCATCCTTT-TC
* *
42693618 ATTTACCGTCAATTCATCCTTTTC
1 ATTTATCATCAATTCATCCTTTTC
42693642 CACATAACGA
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
23 1 0.02
24 40 0.95
25 1 0.02
ACGTcount: A:0.24, C:0.24, G:0.04, T:0.49
Consensus pattern (24 bp):
ATTTATCATCAATTCATCCTTTTC
Found at i:42699619 original size:14 final size:16
Alignment explanation
Indices: 42699587--42699633 Score: 53
Period size: 14 Copynumber: 3.0 Consensus size: 16
42699577 TGGTGAAGAG
* *
42699587 AAAGAAAGAGAAAGGAA
1 AAAGAGAGA-AAAGAAA
42699604 AAAGA-A-AAAAGAAA
1 AAAGAGAGAAAAGAAA
42699618 AAAGAGAGAAAAGAAA
1 AAAGAGAGAAAAGAAA
42699634 GGGAAAGGGA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
14 11 0.41
15 2 0.07
16 9 0.33
17 5 0.19
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (16 bp):
AAAGAGAGAAAAGAAA
Found at i:42701048 original size:18 final size:18
Alignment explanation
Indices: 42701010--42701048 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
42701000 TGAACTCTAC
* * *
42701010 AATTCGAATAATTTAAGT
1 AATTCGAATAACTCAAAT
42701028 AATTCGAATAACTCAAAT
1 AATTCGAATAACTCAAAT
42701046 AAT
1 AAT
42701049 AGATTGGTGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.49, C:0.10, G:0.08, T:0.33
Consensus pattern (18 bp):
AATTCGAATAACTCAAAT
Found at i:42701179 original size:18 final size:19
Alignment explanation
Indices: 42701142--42701195 Score: 67
Period size: 18 Copynumber: 2.9 Consensus size: 19
42701132 GTTCCAATAT
* *
42701142 AATTCAAAATAATTTTTAAA
1 AATTCCAAAT-ATTTATAAA
42701162 AA-TCCAAATATTTATAAA
1 AATTCCAAATATTTATAAA
42701180 AATTCCAAA-ATTTATA
1 AATTCCAAATATTTATA
42701196 TTTTTTAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
18 17 0.55
19 12 0.39
20 2 0.06
ACGTcount: A:0.54, C:0.09, G:0.00, T:0.37
Consensus pattern (19 bp):
AATTCCAAATATTTATAAA
Found at i:42701181 original size:19 final size:18
Alignment explanation
Indices: 42701159--42701195 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
42701149 AATAATTTTT
42701159 AAAAATCCAAATATTTATA
1 AAAAATCCAAA-ATTTATA
*
42701178 AAAATTCCAAAATTTATA
1 AAAAATCCAAAATTTATA
42701196 TTTTTTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (18 bp):
AAAAATCCAAAATTTATA
Found at i:42701360 original size:16 final size:17
Alignment explanation
Indices: 42701330--42701362 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
42701320 CTTTAAAAGA
42701330 GTTTTCAAATATATATG
1 GTTTTCAAATATATATG
*
42701347 GTTTT-AAATTTATATG
1 GTTTTCAAATATATATG
42701363 CTCTAAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.33, C:0.03, G:0.12, T:0.52
Consensus pattern (17 bp):
GTTTTCAAATATATATG
Found at i:42702036 original size:16 final size:16
Alignment explanation
Indices: 42702002--42702054 Score: 63
Period size: 16 Copynumber: 3.3 Consensus size: 16
42701992 ATGGCATCAG
42702002 TCATGCAATACTCAAT
1 TCATGCAATACTCAAT
*
42702018 TCATG-AATACATCATT
1 TCATGCAATAC-TCAAT
* *
42702034 TCATACCATACTCAAT
1 TCATGCAATACTCAAT
42702050 TCATG
1 TCATG
42702055 AGTATATAAC
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
15 5 0.17
16 21 0.70
17 4 0.13
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.34
Consensus pattern (16 bp):
TCATGCAATACTCAAT
Found at i:42703223 original size:4 final size:4
Alignment explanation
Indices: 42703214--42703288 Score: 53
Period size: 4 Copynumber: 17.0 Consensus size: 4
42703204 TGTCTTTCTC
*
42703214 CTTT CTTT CTTT CCTTT -TTT TTTT CTTTT CTTT CTTT CCTTT CTGTTT
1 CTTT CTTT CTTT -CTTT CTTT CTTT C-TTT CTTT CTTT -CTTT C--TTT
*
42703262 CGTTT CGTTTT GTTT CTTT CTTT CTTT
1 C-TTT C--TTT CTTT CTTT CTTT CTTT
42703289 ATTCATTTAC
Statistics
Matches: 60, Mismatches: 4, Indels: 14
0.77 0.05 0.18
Matches are distributed among these distances:
3 3 0.05
4 33 0.55
5 17 0.28
6 7 0.12
ACGTcount: A:0.00, C:0.21, G:0.05, T:0.73
Consensus pattern (4 bp):
CTTT
Found at i:42703229 original size:25 final size:25
Alignment explanation
Indices: 42703201--42703254 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
42703191 GAAACCCTAG
42703201 CCTTGTCTTTCTCCTTTCTTTCTTT
1 CCTTGTCTTTCTCCTTTCTTTCTTT
* * * *
42703226 CCTTTTTTTTTTCTTTTCTTTCTTT
1 CCTTGTCTTTCTCCTTTCTTTCTTT
42703251 CCTT
1 CCTT
42703255 TCTGTTTCGT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.00, C:0.28, G:0.02, T:0.70
Consensus pattern (25 bp):
CCTTGTCTTTCTCCTTTCTTTCTTT
Found at i:42703242 original size:9 final size:9
Alignment explanation
Indices: 42703215--42703288 Score: 73
Period size: 9 Copynumber: 8.2 Consensus size: 9
42703205 GTCTTTCTCC
42703215 TTTCTTTCT
1 TTTCTTTCT
*
42703224 TTCCTTT-T
1 TTTCTTTCT
42703232 TTT-TTTCT
1 TTTCTTTCT
42703240 TTTCTTTCT
1 TTTCTTTCT
*
42703249 TTCCTTTCT
1 TTTCTTTCT
42703258 GTTTCGTTTCGT
1 -TTTC-TTTC-T
*
42703270 TTTGTTTC-
1 TTTCTTTCT
42703278 TTTCTTTCT
1 TTTCTTTCT
42703287 TT
1 TT
42703289 ATTCATTTAC
Statistics
Matches: 53, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
7 3 0.06
8 14 0.26
9 21 0.40
10 7 0.13
11 7 0.13
12 1 0.02
ACGTcount: A:0.00, C:0.20, G:0.05, T:0.74
Consensus pattern (9 bp):
TTTCTTTCT
Found at i:42704321 original size:25 final size:25
Alignment explanation
Indices: 42704293--42704342 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
42704283 ATATAGTTTT
42704293 TATATTAT-TTATAAAGGTTATAATA
1 TATATTATATTAT-AAGGTTATAATA
*
42704318 TATATTATATTATAATGTTATAATA
1 TATATTATATTATAAGGTTATAATA
42704343 AAACAAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 19 0.83
26 4 0.17
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (25 bp):
TATATTATATTATAAGGTTATAATA
Found at i:42707097 original size:20 final size:20
Alignment explanation
Indices: 42707074--42707111 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
42707064 GCATGATTTG
*
42707074 TATATGTGAAATGATTTAAA
1 TATATATGAAATGATTTAAA
*
42707094 TATATATGAATTGATTTA
1 TATATATGAAATGATTTA
42707112 GAAAACTTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.42, C:0.00, G:0.13, T:0.45
Consensus pattern (20 bp):
TATATATGAAATGATTTAAA
Found at i:42734600 original size:16 final size:16
Alignment explanation
Indices: 42734579--42734630 Score: 70
Period size: 16 Copynumber: 3.2 Consensus size: 16
42734569 TTTGGTTCGC
42734579 TGTATTGAATTAGAGG
1 TGTATTGAATTAGAGG
*
42734595 TGTATTGGATTAGAGG
1 TGTATTGAATTAGAGG
*
42734611 TGTAATGGAA-TAGAGG
1 TGT-ATTGAATTAGAGG
42734627 TGTA
1 TGTA
42734631 ATAGCAAATC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
15 1 0.03
16 27 0.84
17 4 0.12
ACGTcount: A:0.31, C:0.00, G:0.35, T:0.35
Consensus pattern (16 bp):
TGTATTGAATTAGAGG
Found at i:42734677 original size:45 final size:44
Alignment explanation
Indices: 42734611--42734705 Score: 136
Period size: 45 Copynumber: 2.1 Consensus size: 44
42734601 GGATTAGAGG
*
42734611 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAG-AAATCAACTGTTTGGTTGAA
* ***
42734656 TGTAATGGAATAGAGGCGTAATAGTAATCCTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGAAATCAACTGTTTGGTTGAA
42734700 TGTAAT
1 TGTAAT
42734706 AGAGGTGTAA
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 22 0.49
45 23 0.51
ACGTcount: A:0.33, C:0.06, G:0.27, T:0.34
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGAAATCAACTGTTTGGTTGAA
Found at i:42734884 original size:18 final size:17
Alignment explanation
Indices: 42734863--42734897 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
42734853 TTATTATTAA
*
42734863 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
42734881 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
42734898 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:42735022 original size:147 final size:145
Alignment explanation
Indices: 42734786--42735056 Score: 499
Period size: 147 Copynumber: 1.9 Consensus size: 145
42734776 ATGATTATTG
42734786 TTATTGTTATTAAATTTTAATAAGATTATTATATCAATAATAAATAATTTAATCATATTTAACAT
1 TTATTGTTATTAAATTTTAATAAGATTATTATATCAATAATAAATAATTTAATCATATTTAACAT
*
42734851 AATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGCAGAA
66 AATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGCAGAA
42734916 ATTTGTTTTGGTAAA
131 ATTTGTTTTGGTAAA
42734931 TTATT-TTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTTAAA
1 TTATTGTTA-TTAAATTTTAATAAGATTATT-ATATCAATAATAAATAATTTAATCATATTT-AA
42734995 CATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
63 CATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
42735057 ATATTCTTAT
Statistics
Matches: 122, Mismatches: 1, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
144 3 0.02
145 26 0.21
146 30 0.25
147 63 0.52
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.46
Consensus pattern (145 bp):
TTATTGTTATTAAATTTTAATAAGATTATTATATCAATAATAAATAATTTAATCATATTTAACAT
AATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGCAGAA
ATTTGTTTTGGTAAA
Found at i:42735027 original size:16 final size:16
Alignment explanation
Indices: 42734990--42735031 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
42734980 TTAATCATAT
*
42734990 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
42735006 TT-AAATATATTATAA
1 TTAAAATATATTATAA
42735021 TTAAAATATAT
1 TTAAAATATAT
42735032 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:42735038 original size:14 final size:15
Alignment explanation
Indices: 42734999--42735040 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
42734989 TTTAAACATA
*
42734999 ATTATTATTAAATAT
1 ATTATAATTAAATAT
42735014 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
42735028 A-TATAATTTAATA
1 ATTATAATTAAATA
42735041 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:42735128 original size:120 final size:121
Alignment explanation
Indices: 42734988--42735285 Score: 521
Period size: 120 Copynumber: 2.5 Consensus size: 121
42734978 ATTTAATCAT
*
42734988 ATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
1 ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
42735053 ATTAATATTCTTATATGAATTTACTCAAACCATAATATATGATACTATAAAATATAA
66 ATTAATATTCTTATATGAATTTACTCAAACCATAATATATGATACTATAAAATA-AA
42735110 A-TT-AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
1 ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
*
42735173 ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATAAA
66 ATTAATATTCTTATATGAATTTACTCAAACCATAATATATGATACTATAAAATAAA
* * *
42735229 ATTTGAA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATT
42735286 TAAAATAATT
Statistics
Matches: 170, Mismatches: 4, Indels: 6
0.94 0.02 0.03
Matches are distributed among these distances:
119 3 0.02
120 162 0.95
121 4 0.02
122 1 0.01
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (121 bp):
ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
ATTAATATTCTTATATGAATTTACTCAAACCATAATATATGATACTATAAAATAAA
Found at i:42735158 original size:14 final size:15
Alignment explanation
Indices: 42735109--42735160 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
42735099 ATAAAATATA
42735109 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
42735124 TATTAAATATATTAT
1 AATTAAATATATTAT
42735139 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
42735152 AATTTAATA
1 AATTAAATA
42735161 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:42735223 original size:61 final size:61
Alignment explanation
Indices: 42735038--42735225 Score: 192
Period size: 61 Copynumber: 3.1 Consensus size: 61
42735028 ATATAATTTA
*
42735038 ATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAACCATAATATATGATACT
1 ATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACT
* * * * * * * * *
42735099 ATAAAA-T-AT-A-AATTAACATAATTATTAT-TAAATATA-TTATAATTAAAATATATAAT-TT
1 ATAAAATTCTTAATAATT-A-AT-ATTCTTATATGAATTTACTCA-AATCATAATATATGATACT
42735157 AATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACT
1 -ATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACT
42735219 ATAAAAT
1 ATAAAAT
42735226 AAAATTTGAA
Statistics
Matches: 96, Mismatches: 19, Indels: 24
0.69 0.14 0.17
Matches are distributed among these distances:
57 4 0.04
58 5 0.05
59 27 0.28
60 16 0.17
61 35 0.36
62 5 0.05
63 4 0.04
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.41
Consensus pattern (61 bp):
ATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACT
Found at i:42735298 original size:28 final size:27
Alignment explanation
Indices: 42735222--42735298 Score: 70
Period size: 28 Copynumber: 2.9 Consensus size: 27
42735212 TGATACTATA
*
42735222 AAATAAAATTTGAAATAATTA-ATATT
1 AAATAAAATTTAAAATAATTATATATT
* *
42735248 AAATATATTTTAATTAA-AA-TATATGATT
1 AAATAAAATTTAA--AATAATTATAT-ATT
*
42735276 TAATAAAATTTAAAATAATTATA
1 AAATAAAATTTAAAATAATTATA
42735299 ACTAATAAAT
Statistics
Matches: 39, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
26 14 0.36
27 6 0.15
28 19 0.49
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.42
Consensus pattern (27 bp):
AAATAAAATTTAAAATAATTATATATT
Found at i:42735395 original size:101 final size:93
Alignment explanation
Indices: 42735228--42735507 Score: 277
Period size: 91 Copynumber: 3.0 Consensus size: 93
42735218 TATAAAATAA
* * * *
42735228 AATTTGAAATAATTAATATTAAATATATTTTAATTAA-AATATATGATTTAATAAAATT-TAAAA
1 AATTTAAAATAATTAATATTAAATATAATTTAA-TAATAATATATAATTTCATAAAATTCT----
* * * *
42735291 TAATTATAACTAATAAATTATATTTTATGAATTTGTAT
61 T-A--ATAA-T-ATAAATTTTATTATATGAATTTATAC
* *
42735329 AATTTAAAATAA-TAATTATTACATATAATTTAATAATAATATATAATTTCATAAAATTCTTGAT
1 AATTTAAAATAATTAA-TATTAAATATAATTTAATAATAATATATAATTTCATAAAATTCTTAAT
*
42735393 -A-ATAAATTTTCTTATATGAATTTATAC
65 AATATAAATTTTATTATATGAATTTATAC
* *
42735420 AATTTAAAATAATTAATATTAAATATAATTTAATAGTGATATATAATTTCATAAAATTCTTAATA
1 AATTTAAAATAATTAATATTAAATATAATTTAATAATAATATATAATTTCATAAAATTCTTAATA
* *
42735485 ATA-AAA-TGTCTTATATGAATTTA
66 ATATAAATTTTATTATATGAATTTA
42735508 CTAAAATCAA
Statistics
Matches: 157, Mismatches: 16, Indels: 22
0.81 0.08 0.11
Matches are distributed among these distances:
91 93 0.59
92 7 0.04
93 1 0.01
94 1 0.01
95 2 0.01
98 1 0.01
100 6 0.04
101 45 0.29
102 1 0.01
ACGTcount: A:0.49, C:0.03, G:0.04, T:0.45
Consensus pattern (93 bp):
AATTTAAAATAATTAATATTAAATATAATTTAATAATAATATATAATTTCATAAAATTCTTAATA
ATATAAATTTTATTATATGAATTTATAC
Found at i:42735396 original size:91 final size:91
Alignment explanation
Indices: 42735301--42735507 Score: 290
Period size: 91 Copynumber: 2.3 Consensus size: 91
42735291 TAATTATAAC
* * * *
42735301 TAATAAATTATATTTTATGAATTTGTATAATTTAAAATAA-TAATTATTACATATAATTTAATAA
1 TAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAA-TATTAAATATAATTTAATAA
*
42735365 TAATATATAATTTCATAAAATTCTTGA
65 TAATATATAATTTCATAAAATTCTTAA
* * *
42735392 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAGT
1 TAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
42735457 GATATATAATTTCATAAAATTCTTAA
66 AATATATAATTTCATAAAATTCTTAA
* * *
42735483 TAATAAAATGTCTTATATGAATTTA
1 TAATAAATTATATTATATGAATTTA
42735508 CTAAAATCAA
Statistics
Matches: 104, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
91 101 0.97
92 3 0.03
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.45
Consensus pattern (91 bp):
TAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
AATATATAATTTCATAAAATTCTTAA
Found at i:42735424 original size:47 final size:47
Alignment explanation
Indices: 42735368--42735507 Score: 123
Period size: 47 Copynumber: 3.0 Consensus size: 47
42735358 TTAATAATAA
*
42735368 TATATAATTTCATAAAATTCTTGATAATAAATTTTCTTATATGAATT
1 TATATAATTTCATAAAATTCTTAATAATAAATTTTCTTATATGAATT
* ** * *
42735415 TATACAA-TT--TAAAATAATTAATATTAAATATAATT-TAATAGTG-A--
1 TATATAATTTCATAAAATTCTTAATAATAAAT-T--TTCTTATA-TGAATT
* *
42735459 TATATAATTTCATAAAATTCTTAATAATAAAATGTCTTATATGAATT
1 TATATAATTTCATAAAATTCTTAATAATAAATTTTCTTATATGAATT
42735506 TA
1 TA
42735508 CTAAAATCAA
Statistics
Matches: 69, Mismatches: 13, Indels: 22
0.66 0.12 0.21
Matches are distributed among these distances:
44 25 0.36
45 8 0.12
46 8 0.12
47 28 0.41
ACGTcount: A:0.46, C:0.05, G:0.04, T:0.45
Consensus pattern (47 bp):
TATATAATTTCATAAAATTCTTAATAATAAATTTTCTTATATGAATT
Found at i:42739147 original size:15 final size:15
Alignment explanation
Indices: 42739127--42739157 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
42739117 ATATTATGTA
*
42739127 TAATTGACGTAAAAT
1 TAATTGACCTAAAAT
42739142 TAATTGACCTAAAAT
1 TAATTGACCTAAAAT
42739157 T
1 T
42739158 TGAAGGTTGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.45, C:0.10, G:0.10, T:0.35
Consensus pattern (15 bp):
TAATTGACCTAAAAT
Found at i:42749650 original size:34 final size:34
Alignment explanation
Indices: 42749601--42749665 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
42749591 ACCTCACTTC
* *
42749601 TATCTTTTTCGTTTTTTCTTTTCACCATCTGTTT
1 TATCTTCTTCGTTTTTTCCTTTCACCATCTGTTT
*
42749635 TATCTTCTTCTTTTTTTCCTTTCACCATCTG
1 TATCTTCTTCGTTTTTTCCTTTCACCATCTG
42749666 ATTTGTTTTC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.09, C:0.25, G:0.05, T:0.62
Consensus pattern (34 bp):
TATCTTCTTCGTTTTTTCCTTTCACCATCTGTTT
Found at i:42749789 original size:18 final size:18
Alignment explanation
Indices: 42749766--42749822 Score: 50
Period size: 18 Copynumber: 3.2 Consensus size: 18
42749756 TCTTGAAAAC
42749766 AAAAAACCCAACACATTA
1 AAAAAACCCAACACATTA
*
42749784 AAAAAA-ACAA-ACA--A
1 AAAAAACCCAACACATTA
42749798 ACAAAGAACCCAACACATTCA
1 A-AAA-AACCCAACACATT-A
42749819 AAAA
1 AAAA
42749823 CTAAATAACA
Statistics
Matches: 30, Mismatches: 2, Indels: 12
0.68 0.05 0.27
Matches are distributed among these distances:
14 2 0.07
15 3 0.10
16 5 0.17
17 6 0.20
18 9 0.30
20 3 0.10
21 2 0.07
ACGTcount: A:0.67, C:0.25, G:0.02, T:0.07
Consensus pattern (18 bp):
AAAAAACCCAACACATTA
Found at i:42749802 original size:34 final size:35
Alignment explanation
Indices: 42749762--42749882 Score: 122
Period size: 39 Copynumber: 3.3 Consensus size: 35
42749752 AGAATCTTGA
42749762 AAACAAAAAACCCAACACATTAAAAAA-AACAAAC
1 AAACAAAAAACCCAACACATTAAAAAATAACAAAC
*
42749796 AAACAAAGAACCCAACACATTCAAAAACTAAATAACAAAC
1 AAACAAAAAACCCAACACATT---AAA--AAATAACAAAC
*
42749836 -AATAAAAAACCCAACACATTCAAAAATATAA-ATAAC
1 AAACAAAAAACCCAACACATT-AAAAA-ATAACA-AAC
*
42749872 AAACAATAAAC
1 AAACAAAAAAC
42749883 AACCCAGAAT
Statistics
Matches: 72, Mismatches: 6, Indels: 15
0.77 0.06 0.16
Matches are distributed among these distances:
34 20 0.28
35 3 0.04
36 7 0.10
37 14 0.19
39 21 0.29
40 7 0.10
ACGTcount: A:0.66, C:0.22, G:0.01, T:0.11
Consensus pattern (35 bp):
AAACAAAAAACCCAACACATTAAAAAATAACAAAC
Found at i:42749833 original size:32 final size:33
Alignment explanation
Indices: 42749762--42749861 Score: 103
Period size: 34 Copynumber: 2.8 Consensus size: 33
42749752 AGAATCTTGA
42749762 AAACAAAAAACCCAACACATTAAAAAAAACAAAC
1 AAACAAAAAACCCAACACATT-AAAAAAACAAAC
*
42749796 AAACAAAGAACCCAACACATTCAAAAACTAA-ATAAC
1 AAACAAAAAACCCAACACATT-AAAAA--AACA-AAC
*
42749832 AAACAATAAAAAACCCAACACATTCAAAAA
1 AAAC---AAAAAACCCAACACATTAAAAAA
42749862 TATAAATAAC
Statistics
Matches: 56, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
34 25 0.45
35 1 0.02
36 10 0.18
38 4 0.07
39 16 0.29
ACGTcount: A:0.66, C:0.24, G:0.01, T:0.09
Consensus pattern (33 bp):
AAACAAAAAACCCAACACATTAAAAAAACAAAC
Found at i:42749868 original size:40 final size:39
Alignment explanation
Indices: 42749766--42749906 Score: 161
Period size: 40 Copynumber: 3.7 Consensus size: 39
42749756 TCTTGAAAAC
42749766 AAAAAACCCAACACATT-AAAAAA-AACA-AACAAAC---
1 AAAAAACCCAACACATTCAAAAAATAA-ATAACAAACAAT
* *
42749800 AAAGAACCCAACACATTCAAAAACTAAATAACAAACAAT
1 AAAAAACCCAACACATTCAAAAAATAAATAACAAACAAT
42749839 AAAAAACCCAACACATTCAAAAATATAAATAACAAACAAT
1 AAAAAACCCAACACATTCAAAAA-ATAAATAACAAACAAT
* * *
42749879 AAACAACCCAGA-ATATTTAAAAAATAAA
1 AAAAAACCCA-ACACATTCAAAAAATAAA
42749907 AAAAGAACCC
Statistics
Matches: 92, Mismatches: 7, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
34 16 0.17
35 6 0.07
36 9 0.10
39 27 0.29
40 33 0.36
41 1 0.01
ACGTcount: A:0.65, C:0.21, G:0.01, T:0.13
Consensus pattern (39 bp):
AAAAAACCCAACACATTCAAAAAATAAATAACAAACAAT
Found at i:42754856 original size:12 final size:12
Alignment explanation
Indices: 42754841--42754870 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
42754831 TCTTAGTCTC
*
42754841 CCTCTCCCTTTT
1 CCTCTCCCTCTT
42754853 CCTCTCCCTCTT
1 CCTCTCCCTCTT
42754865 CCTCTC
1 CCTCTC
42754871 TTCGTTCTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.00, C:0.57, G:0.00, T:0.43
Consensus pattern (12 bp):
CCTCTCCCTCTT
Found at i:42762236 original size:11 final size:11
Alignment explanation
Indices: 42762220--42762277 Score: 77
Period size: 11 Copynumber: 5.5 Consensus size: 11
42762210 AACTTTTGAT
42762220 TAAAAAAATTA
1 TAAAAAAATTA
42762231 T-AAAAAA-T-
1 TAAAAAAATTA
*
42762239 TAAAAAGATTA
1 TAAAAAAATTA
42762250 TAAAAAAATTA
1 TAAAAAAATTA
*
42762261 TCAAAAAATTA
1 TAAAAAAATTA
42762272 TAAAAA
1 TAAAAA
42762278 TTATTAAATA
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
8 1 0.03
9 6 0.15
10 7 0.17
11 26 0.65
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.26
Consensus pattern (11 bp):
TAAAAAAATTA
Found at i:42762237 original size:10 final size:10
Alignment explanation
Indices: 42762218--42762422 Score: 110
Period size: 9 Copynumber: 20.9 Consensus size: 10
42762208 ACAACTTTTG
42762218 ATTA-AAAAA
1 ATTATAAAAA
42762227 ATTATAAAAA
1 ATTATAAAAA
*
42762237 ATTA-AAAAG
1 ATTATAAAAA
42762246 ATTATAAAAAA
1 ATTAT-AAAAA
42762257 ATTATCAAAAA
1 ATTAT-AAAAA
42762268 ATTAT-AAAA
1 ATTATAAAAA
* *
42762277 ATTATTAAAT
1 ATTATAAAAA
42762287 ATT-T-AAAA
1 ATTATAAAAA
*
42762295 A-TAT-GAAA
1 ATTATAAAAA
* *
42762303 CTTGATATAAA
1 ATT-ATAAAAA
*
42762314 CTTAT-AAAA
1 ATTATAAAAA
42762323 ATTATAAAAA
1 ATTATAAAAA
** *
42762333 AACATCAAAA
1 ATTATAAAAA
42762343 A-TATAAAAA
1 ATTATAAAAA
* *
42762352 AGTCTAATAAA
1 ATTATAA-AAA
*
42762363 A-TATAATAA
1 ATTATAAAAA
*
42762372 ATCATAAAAA
1 ATTATAAAAA
42762382 TATTATAAAAGTA
1 -ATTATAAAA--A
*
42762395 ATT-TTAAAA
1 ATTATAAAAA
42762404 ATT-TAAAAA
1 ATTATAAAAA
*
42762413 TTTATTAAAA
1 ATTA-TAAAA
42762423 CATATTAAAA
Statistics
Matches: 155, Mismatches: 24, Indels: 32
0.73 0.11 0.15
Matches are distributed among these distances:
7 1 0.01
8 8 0.05
9 51 0.33
10 45 0.29
11 46 0.30
12 3 0.02
13 1 0.01
ACGTcount: A:0.63, C:0.03, G:0.02, T:0.31
Consensus pattern (10 bp):
ATTATAAAAA
Found at i:42762242 original size:19 final size:19
Alignment explanation
Indices: 42762218--42762277 Score: 84
Period size: 19 Copynumber: 3.0 Consensus size: 19
42762208 ACAACTTTTG
42762218 ATTAAAAAAATTATAAAAA
1 ATTAAAAAAATTATAAAAA
*
42762237 ATTAAAAAGATTATAAAAAA
1 ATTAAAAAAATTAT-AAAAA
42762257 ATTATCAAAAAATTATAAAAA
1 ATTA--AAAAAATTATAAAAA
42762278 TTATTAAATA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
19 13 0.36
20 9 0.25
21 5 0.14
22 9 0.25
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.27
Consensus pattern (19 bp):
ATTAAAAAAATTATAAAAA
Found at i:42762267 original size:31 final size:30
Alignment explanation
Indices: 42762220--42762281 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 30
42762210 AACTTTTGAT
42762220 TAAAAAAATTATAAAAAATTA-AAAAGATTA
1 TAAAAAAATTATAAAAAATTATAAAA-ATTA
42762250 TAAAAAAATTATCAAAAAATTATAAAAATTA
1 TAAAAAAATTAT-AAAAAATTATAAAAATTA
42762281 T
1 T
42762282 TAAATATTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
30 12 0.40
31 14 0.47
32 4 0.13
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.29
Consensus pattern (30 bp):
TAAAAAAATTATAAAAAATTATAAAAATTA
Found at i:42762351 original size:9 final size:9
Alignment explanation
Indices: 42762222--42762391 Score: 65
Period size: 10 Copynumber: 17.4 Consensus size: 9
42762212 CTTTTGATTA
42762222 AAAAAATTAT
1 AAAAAA-TAT
42762232 AAAAAAT-T
1 AAAAAATAT
42762240 AAAAAGATTAT
1 AAAAA-A-TAT
42762251 AAAAAAATTAT
1 -AAAAAA-TAT
42762262 CAAAAAATTAT
1 -AAAAAA-TAT
*
42762273 AAAAATTAT
1 AAAAAATAT
* *
42762282 TAAATAT-T
1 AAAAAATAT
*
42762290 TAAAAATAT
1 AAAAAATAT
* **
42762299 GAAACTTGAT
1 AAAAAAT-AT
**
42762309 ATAAACTTAT
1 A-AAAAATAT
*
42762319 AAAAATTAT
1 AAAAAATAT
*
42762328 AAAAAAACAT
1 -AAAAAATAT
*
42762338 CAAAAATAT
1 AAAAAATAT
*
42762347 AAAAAAGTCT
1 AAAAAA-TAT
42762357 AATAAAATAT
1 AA-AAAATAT
*
42762367 AATAAATCAT
1 AAAAAAT-AT
42762377 AAAAATATTAT
1 AAAAA-A-TAT
42762388 AAAA
1 AAAA
42762392 GTAATTTTAA
Statistics
Matches: 127, Mismatches: 20, Indels: 25
0.74 0.12 0.15
Matches are distributed among these distances:
8 13 0.10
9 37 0.29
10 38 0.30
11 33 0.26
12 6 0.05
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.29
Consensus pattern (9 bp):
AAAAAATAT
Found at i:42763008 original size:29 final size:28
Alignment explanation
Indices: 42762976--42763067 Score: 91
Period size: 29 Copynumber: 3.2 Consensus size: 28
42762966 TAATTTCAAG
42762976 TATTTTAAATAATTTTTATATTTTTATAA
1 TATTTT-AATAATTTTTATATTTTTATAA
42763005 TA-TTT-ATAAGTTTTTATATTTTATTATAA
1 TATTTTAATAA-TTTTTATA-TTT-TTATAA
* * *
42763034 T-TTTTAATAATTTTAATAATTTTCTAA
1 TATTTTAATAATTTTTATATTTTTATAA
*
42763061 TTTTTTA
1 TATTTTA
42763068 TGATTTTCTT
Statistics
Matches: 54, Mismatches: 3, Indels: 13
0.77 0.04 0.19
Matches are distributed among these distances:
26 4 0.07
27 14 0.26
28 13 0.24
29 19 0.35
30 4 0.07
ACGTcount: A:0.35, C:0.01, G:0.01, T:0.63
Consensus pattern (28 bp):
TATTTTAATAATTTTTATATTTTTATAA
Found at i:42763052 original size:19 final size:19
Alignment explanation
Indices: 42762861--42763061 Score: 85
Period size: 19 Copynumber: 10.4 Consensus size: 19
42762851 TTTTTTATGT
*
42762861 TTTTTAATAATTTTCATAA
1 TTTTTAATAATTTTAATAA
*
42762880 -GTTTATATGAATTTTAAT-A
1 TTTTTA-AT-AATTTTAATAA
* * * *
42762899 TTTTAAATATTTTTTATAG
1 TTTTTAATAATTTTAATAA
* * * *
42762918 TTTTTAACATTTTTAGTATT
1 TTTTTAATAATTTTAATA-A
* * *
42762938 TTTTTAAAGAATTCTAATACG
1 TTTTT-AATAATTTTAATA-A
** *
42762959 TTTTTTTTAATTTCAAGT-A
1 TTTTTAATAATTTTAA-TAA
* *
42762978 TTTTAAATAATTTTTAT-A
1 TTTTTAATAATTTTAATAA
42762996 TTTTT-ATAATATTT-ATAA
1 TTTTTAATAAT-TTTAATAA
42763014 GTTTTT-AT-ATTTTATTATAA
1 -TTTTTAATAATTTTA--ATAA
42763034 TTTTTAATAATTTTAATAA
1 TTTTTAATAATTTTAATAA
42763053 TTTTCTAAT
1 TTTT-TAAT
42763062 TTTTTATGAT
Statistics
Matches: 136, Mismatches: 30, Indels: 31
0.69 0.15 0.16
Matches are distributed among these distances:
17 10 0.07
18 23 0.17
19 50 0.37
20 32 0.24
21 21 0.15
ACGTcount: A:0.34, C:0.03, G:0.04, T:0.59
Consensus pattern (19 bp):
TTTTTAATAATTTTAATAA
Found at i:42763062 original size:27 final size:27
Alignment explanation
Indices: 42762977--42763074 Score: 99
Period size: 27 Copynumber: 3.6 Consensus size: 27
42762967 AATTTCAAGT
*
42762977 ATTTTAAATAATTTTTATATTTTTATA
1 ATTTTTAATAATTTTTATATTTTTATA
*
42763004 ATATTT-ATAAGTTTTTATATTTTATTATA
1 ATTTTTAATAA-TTTTTATA-TTT-TTATA
* * *
42763033 ATTTTTAATAATTTTAATAATTTTCTA
1 ATTTTTAATAATTTTTATATTTTTATA
* *
42763060 ATTTTTTATGATTTT
1 ATTTTTAATAATTTT
42763075 CTTGATGAGA
Statistics
Matches: 59, Mismatches: 8, Indels: 8
0.79 0.11 0.11
Matches are distributed among these distances:
26 4 0.07
27 29 0.49
28 5 0.08
29 17 0.29
30 4 0.07
ACGTcount: A:0.34, C:0.01, G:0.02, T:0.63
Consensus pattern (27 bp):
ATTTTTAATAATTTTTATATTTTTATA
Found at i:42763074 original size:9 final size:9
Alignment explanation
Indices: 42762984--42763065 Score: 87
Period size: 9 Copynumber: 9.0 Consensus size: 9
42762974 AGTATTTTAA
42762984 ATAATTTTT
1 ATAATTTTT
42762993 AT-ATTTTT
1 ATAATTTTT
*
42763001 ATAATATTT
1 ATAATTTTT
42763010 ATAAGTTTTT
1 ATAA-TTTTT
*
42763020 ATATTTTATT
1 ATAATTT-TT
42763030 ATAATTTTT
1 ATAATTTTT
*
42763039 AATAATTTTA
1 -ATAATTTTT
42763049 ATAA-TTTT
1 ATAATTTTT
*
42763057 CTAATTTTT
1 ATAATTTTT
42763066 TATGATTTTC
Statistics
Matches: 61, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
8 14 0.23
9 24 0.39
10 23 0.38
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.63
Consensus pattern (9 bp):
ATAATTTTT
Found at i:42764415 original size:40 final size:40
Alignment explanation
Indices: 42764371--42764453 Score: 166
Period size: 40 Copynumber: 2.1 Consensus size: 40
42764361 TGGGATGGAA
42764371 GATAGTCCAATGGAAGTGGTTTACAGGAAAGAAAGACCAC
1 GATAGTCCAATGGAAGTGGTTTACAGGAAAGAAAGACCAC
42764411 GATAGTCCAATGGAAGTGGTTTACAGGAAAGAAAGACCAC
1 GATAGTCCAATGGAAGTGGTTTACAGGAAAGAAAGACCAC
42764451 GAT
1 GAT
42764454 TGGTAACTTT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.40, C:0.14, G:0.28, T:0.18
Consensus pattern (40 bp):
GATAGTCCAATGGAAGTGGTTTACAGGAAAGAAAGACCAC
Found at i:42766956 original size:29 final size:29
Alignment explanation
Indices: 42766907--42766971 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 29
42766897 ACTTCAATTT
* *
42766907 TTTTTCTTAGATCGCCGCAAAGGCTTTCA
1 TTTTTCTTAGATCGCCACAAAGGCTTCCA
* *
42766936 TTTTTCTTAGATTGCCACAAAGTCTTCCA
1 TTTTTCTTAGATCGCCACAAAGGCTTCCA
42766965 TTTTTCT
1 TTTTTCT
42766972 AGTGTGTTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.20, C:0.23, G:0.12, T:0.45
Consensus pattern (29 bp):
TTTTTCTTAGATCGCCACAAAGGCTTCCA
Found at i:42772251 original size:24 final size:24
Alignment explanation
Indices: 42772224--42772287 Score: 74
Period size: 24 Copynumber: 2.7 Consensus size: 24
42772214 CATTTTCTAA
* **
42772224 TGCTACTGAAGAGCCCACTCACCC
1 TGCTGCTGAAGAGCCCACTCAAAC
* *
42772248 TGCTGCCGAGGAGCCCACTCAAAC
1 TGCTGCTGAAGAGCCCACTCAAAC
*
42772272 TGCTGCTGAATAGCCC
1 TGCTGCTGAAGAGCCC
42772288 GAAAATATGC
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.23, C:0.38, G:0.22, T:0.17
Consensus pattern (24 bp):
TGCTGCTGAAGAGCCCACTCAAAC
Found at i:42772764 original size:14 final size:14
Alignment explanation
Indices: 42772747--42772775 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
42772737 ATGTATGATC
42772747 ATTTTAGTATAGTT
1 ATTTTAGTATAGTT
42772761 ATTTTAGTATAGTT
1 ATTTTAGTATAGTT
42772775 A
1 A
42772776 AATCTGTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (14 bp):
ATTTTAGTATAGTT
Found at i:42779212 original size:20 final size:20
Alignment explanation
Indices: 42779167--42779214 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
42779157 TAATATTTAA
42779167 TTATATTTAAATAAAATTAT
1 TTATATTTAAATAAAATTAT
* **
42779187 TAATATTTATTTATAAATT-T
1 TTATATTTAAATA-AAATTAT
42779207 TTATATTT
1 TTATATTT
42779215 TTATTCAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 18 0.78
21 5 0.22
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (20 bp):
TTATATTTAAATAAAATTAT
Found at i:42782048 original size:29 final size:29
Alignment explanation
Indices: 42781962--42782052 Score: 123
Period size: 29 Copynumber: 3.2 Consensus size: 29
42781952 ATTTTTATAT
42781962 ATTTAATCAATGGTTCATGAGATCTATTG
1 ATTTAATCAATGGTTCATGAGATCTATTG
* * ** *
42781991 ATTTAAAC-CTTATT-TTGAGATCTATTG
1 ATTTAATCAATGGTTCATGAGATCTATTG
42782018 ATTTAATCAATGGTTCATGAGATCTATTG
1 ATTTAATCAATGGTTCATGAGATCTATTG
42782047 ATTTAA
1 ATTTAA
42782053 AAACAATTTT
Statistics
Matches: 50, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
27 19 0.38
28 6 0.12
29 25 0.50
ACGTcount: A:0.32, C:0.10, G:0.14, T:0.44
Consensus pattern (29 bp):
ATTTAATCAATGGTTCATGAGATCTATTG
Found at i:42782793 original size:17 final size:17
Alignment explanation
Indices: 42782773--42782871 Score: 58
Period size: 17 Copynumber: 5.8 Consensus size: 17
42782763 TCTATGCTAA
42782773 ATGCAAACTATGCTGTT
1 ATGCAAACTATGCTGTT
* * *
42782790 ATGCGAACCTATTCT-AT
1 ATGC-AAACTATGCTGTT
* * *
42782807 GTGCGAACTATGTTGTT
1 ATGCAAACTATGCTGTT
* *
42782824 ATGCAAACCTACG-TTTT
1 ATGCAAA-CTATGCTGTT
** * *
42782841 ATGTGAACTGTGTTGTT
1 ATGCAAACTATGCTGTT
42782858 ATGCAAACTATGCT
1 ATGCAAACTATGCT
42782872 AGGTATGATG
Statistics
Matches: 56, Mismatches: 22, Indels: 8
0.65 0.26 0.09
Matches are distributed among these distances:
16 9 0.16
17 35 0.62
18 12 0.21
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.37
Consensus pattern (17 bp):
ATGCAAACTATGCTGTT
Found at i:42782816 original size:34 final size:34
Alignment explanation
Indices: 42782754--42782834 Score: 99
Period size: 34 Copynumber: 2.4 Consensus size: 34
42782744 AACTATATTT
*
42782754 TTATGCGAATCTATGCTAAATGCAAACTATGCTG
1 TTATGCGAACCTATGCTAAATGCAAACTATGCTG
* ** * *
42782788 TTATGCGAACCTATTCTATGTGCGAACTATGTTG
1 TTATGCGAACCTATGCTAAATGCAAACTATGCTG
*
42782822 TTATGCAAACCTA
1 TTATGCGAACCTA
42782835 CGTTTTATGT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 40 1.00
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.35
Consensus pattern (34 bp):
TTATGCGAACCTATGCTAAATGCAAACTATGCTG
Found at i:42782849 original size:34 final size:33
Alignment explanation
Indices: 42782778--42782865 Score: 106
Period size: 34 Copynumber: 2.6 Consensus size: 33
42782768 GCTAAATGCA
* *
42782778 AACTATGCTGTTATGCGAACCTATTCTATGTGCG
1 AACTATGTTGTTATGCAAACCTATTCTATGT-CG
*
42782812 AACTATGTTGTTATGCAAACCTACGTTTTATGT-G
1 AACTATGTTGTTATGCAAACCTA--TTCTATGTCG
*
42782846 AACTGTGTTGTTATGCAAAC
1 AACTATGTTGTTATGCAAAC
42782866 TATGCTAGGT
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
34 41 0.85
36 7 0.15
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.38
Consensus pattern (33 bp):
AACTATGTTGTTATGCAAACCTATTCTATGTCG
Found at i:42789075 original size:27 final size:27
Alignment explanation
Indices: 42789041--42789098 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 27
42789031 TTTTCTAACA
*
42789041 TATT-AAAAAT-AAATTAAATAATATTT
1 TATTAAAAAATAAAAATAAA-AATATTT
42789067 GTATTAAAAAATAAAAATAAAAATATTT
1 -TATTAAAAAATAAAAATAAAAATATTT
42789095 TATT
1 TATT
42789099 GTATTAAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
27 8 0.29
28 13 0.46
29 7 0.25
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.40
Consensus pattern (27 bp):
TATTAAAAAATAAAAATAAAAATATTT
Found at i:42789220 original size:6 final size:6
Alignment explanation
Indices: 42789209--42789238 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
42789199 TTAGTGGTTT
42789209 AATATA AATATA AATATA AATATA AATATA
1 AATATA AATATA AATATA AATATA AATATA
42789239 TATAATTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (6 bp):
AATATA
Found at i:42789272 original size:29 final size:30
Alignment explanation
Indices: 42789227--42789291 Score: 82
Period size: 29 Copynumber: 2.2 Consensus size: 30
42789217 TATAAATATA
42789227 AATATAAATATATATAATTATTATT-TAACAT
1 AATATAAATATATATAATT-TT-TTATAACAT
*
42789258 -ATATAATTA-ATATAATTTTTTATAACAT
1 AATATAAATATATATAATTTTTTATAACAT
42789286 AATATA
1 AATATA
42789292 TTTAGGTTGA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
27 2 0.06
28 8 0.26
29 13 0.42
30 8 0.26
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (30 bp):
AATATAAATATATATAATTTTTTATAACAT
Found at i:42797612 original size:50 final size:51
Alignment explanation
Indices: 42797557--42797691 Score: 254
Period size: 51 Copynumber: 2.7 Consensus size: 51
42797547 GTTACTTTTA
*
42797557 CACGTAGTAGCCTCCACATAGTACTACACACGTGATCAAG-TTTTACGGTT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTTACGGTT
42797607 CACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTTACGGTT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTTACGGTT
42797658 CACGTAGTAGCCTTCACATAGTACTACACACGTG
1 CACGTAGTAGCCTTCACATAGTACTACACACGTG
42797692 TTCATCGATA
Statistics
Matches: 83, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
50 39 0.47
51 44 0.53
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (51 bp):
CACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTTACGGTT
Found at i:42801522 original size:49 final size:47
Alignment explanation
Indices: 42801420--42801541 Score: 163
Period size: 49 Copynumber: 2.6 Consensus size: 47
42801410 GAAATCTCTG
* * * *
42801420 TGTAAGACCATATCTGGAATATGGCATCATTGTGATATGTGATTCCG
1 TGTAAGACCATAGCTGGACTATGGCATCATTGTGATATGTGATTACA
* *
42801467 TGTAAGACCATAGCTGGGCTATGGCATCGGTATGTGATATGTGATTACA
1 TGTAAGACCATAGCTGGACTATGGCATC-AT-TGTGATATGTGATTACA
*
42801516 TGTAAGACCATAGTTGGACTATGGCA
1 TGTAAGACCATAGCTGGACTATGGCA
42801542 ATGTGAAAAC
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
47 25 0.38
48 1 0.02
49 39 0.60
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (47 bp):
TGTAAGACCATAGCTGGACTATGGCATCATTGTGATATGTGATTACA
Found at i:42807972 original size:25 final size:25
Alignment explanation
Indices: 42807924--42807972 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
42807914 CATAATTGAA
* * *
42807924 ATGAAATGGATTGATTTTGTATATT
1 ATGAAATAGATTGATTATGAATATT
*
42807949 ATGAAATATATTGATTATGAATAT
1 ATGAAATAGATTGATTATGAATAT
42807973 ATGTGTATTG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.16, T:0.45
Consensus pattern (25 bp):
ATGAAATAGATTGATTATGAATATT
Found at i:42808426 original size:43 final size:43
Alignment explanation
Indices: 42808362--42808447 Score: 154
Period size: 43 Copynumber: 2.0 Consensus size: 43
42808352 TATGTGATTG
42808362 ATATTGAAATGGCAAAGATGAGAAATGAATATGAGATGAGAAA
1 ATATTGAAATGGCAAAGATGAGAAATGAATATGAGATGAGAAA
* *
42808405 ATATTGAAATGGCAAATATGAGAAATGATTATGAGATGAGAAA
1 ATATTGAAATGGCAAAGATGAGAAATGAATATGAGATGAGAAA
42808448 TGAAATATGA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.50, C:0.02, G:0.24, T:0.23
Consensus pattern (43 bp):
ATATTGAAATGGCAAAGATGAGAAATGAATATGAGATGAGAAA
Found at i:42808431 original size:16 final size:16
Alignment explanation
Indices: 42808367--42808431 Score: 52
Period size: 16 Copynumber: 4.4 Consensus size: 16
42808357 GATTGATATT
*
42808367 GAAATGGCAAAGATGA
1 GAAATGGCAAATATGA
42808383 GAAAT-G--AATATGA
1 GAAATGGCAAATATGA
* *
42808396 G--ATGAGAAAATAT-T
1 GAAATG-GCAAATATGA
42808410 GAAATGGCAAATATGA
1 GAAATGGCAAATATGA
42808426 GAAATG
1 GAAATG
42808432 ATTATGAGAT
Statistics
Matches: 38, Mismatches: 4, Indels: 14
0.68 0.07 0.25
Matches are distributed among these distances:
11 2 0.05
13 8 0.21
14 1 0.03
15 13 0.34
16 14 0.37
ACGTcount: A:0.51, C:0.03, G:0.26, T:0.20
Consensus pattern (16 bp):
GAAATGGCAAATATGA
Found at i:42809828 original size:49 final size:49
Alignment explanation
Indices: 42809756--42809852 Score: 167
Period size: 49 Copynumber: 2.0 Consensus size: 49
42809746 TCAAAAAGGG
* *
42809756 ATAAATAGTGATAAGAGTGTAGACAGTGAAAGACTAAGTTTAGCAATGT
1 ATAAATAGTGATAAGAGTGTAGACAGTGAAAGACCAAGTTTAGAAATGT
*
42809805 ATAAATAGTGATAAGAGTGTAGACAGTGGAAGACCAAGTTTAGAAATG
1 ATAAATAGTGATAAGAGTGTAGACAGTGAAAGACCAAGTTTAGAAATG
42809853 CATAGCATAA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.43, C:0.06, G:0.26, T:0.25
Consensus pattern (49 bp):
ATAAATAGTGATAAGAGTGTAGACAGTGAAAGACCAAGTTTAGAAATGT
Found at i:42818923 original size:19 final size:19
Alignment explanation
Indices: 42818881--42818931 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 19
42818871 AAATTACAAA
42818881 AAAAATTCAAAATAATTTTT
1 AAAAATTCAAAAT-ATTTTT
42818901 -AAAATTCAAAAT-TTTTAT
1 AAAAATTCAAAATATTTT-T
42818919 AAAAATTCTAAAA
1 AAAAATTC-AAAA
42818932 AATATATAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
17 4 0.14
18 1 0.04
19 19 0.68
20 4 0.14
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.37
Consensus pattern (19 bp):
AAAAATTCAAAATATTTTT
Found at i:42828222 original size:54 final size:54
Alignment explanation
Indices: 42828164--42828271 Score: 198
Period size: 54 Copynumber: 2.0 Consensus size: 54
42828154 ACACAAAATG
42828164 TTCACTTAACTAGAACTAATTTAAAATGTTCAATATGATCATTTATAAAGAAAA
1 TTCACTTAACTAGAACTAATTTAAAATGTTCAATATGATCATTTATAAAGAAAA
* *
42828218 TTCACTTATCTAGAACTAATTTAACATGTTCAATATGATCATTTATAAAGAAAA
1 TTCACTTAACTAGAACTAATTTAAAATGTTCAATATGATCATTTATAAAGAAAA
42828272 ATATTATCAT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.44, C:0.12, G:0.07, T:0.36
Consensus pattern (54 bp):
TTCACTTAACTAGAACTAATTTAAAATGTTCAATATGATCATTTATAAAGAAAA
Found at i:42830248 original size:20 final size:20
Alignment explanation
Indices: 42830207--42830250 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
42830197 AATGAAGTGC
* *
42830207 AAATGATTTTAACCAAATTA
1 AAATGATTTTAAACAAAGTA
42830227 AAATGATTTTCAAAC-AAGTA
1 AAATGATTTT-AAACAAAGTA
42830247 AAAT
1 AAAT
42830251 TTTCTCTAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 18 0.86
21 3 0.14
ACGTcount: A:0.52, C:0.09, G:0.07, T:0.32
Consensus pattern (20 bp):
AAATGATTTTAAACAAAGTA
Found at i:42830414 original size:21 final size:22
Alignment explanation
Indices: 42830390--42830431 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
42830380 TGTTTTTGGT
42830390 ATTGATAC-TT-TTTGAAAAATA
1 ATTGATACATTCTTT-AAAAATA
42830411 ATTGATACATTCTTTAAAAAT
1 ATTGATACATTCTTTAAAAAT
42830432 GATGCCAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 8 0.42
22 8 0.42
23 3 0.16
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43
Consensus pattern (22 bp):
ATTGATACATTCTTTAAAAATA
Found at i:42836815 original size:9 final size:9
Alignment explanation
Indices: 42836798--42836834 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
42836788 TGAGTTTTCG
42836798 AATTCGAAT
1 AATTCGAAT
*
42836807 AACTCGAAT
1 AATTCGAAT
*
42836816 AATTCAAAT
1 AATTCGAAT
42836825 AATTCGAAT
1 AATTCGAAT
42836834 A
1 A
42836835 TCAAACTGTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.49, C:0.14, G:0.08, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:42837497 original size:18 final size:17
Alignment explanation
Indices: 42837433--42837497 Score: 51
Period size: 18 Copynumber: 3.6 Consensus size: 17
42837423 ACATTTTATT
*
42837433 TTTAAAATAATTTTT-A
1 TTTAAAATATTTTTTAA
*
42837449 TTAAAAAATCATATTTTTACA
1 TT-TAAAAT-AT-TTTTTA-A
*
42837470 TTTAATATATTTTTTAA
1 TTTAAAATATTTTTTAA
42837487 TTTCAAAATAT
1 TTT-AAAATAT
42837498 ATAGTGACAA
Statistics
Matches: 38, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
16 2 0.05
17 9 0.24
18 13 0.34
19 7 0.18
20 4 0.11
21 3 0.08
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (17 bp):
TTTAAAATATTTTTTAA
Found at i:42845942 original size:33 final size:32
Alignment explanation
Indices: 42845886--42845951 Score: 82
Period size: 34 Copynumber: 2.0 Consensus size: 32
42845876 AAAAATTATT
*
42845886 AATGATTTTTTAAAATTTGAAA-TTGAAACGTA
1 AATGATTTTTTAAAAATTGAAATTTGAAA-GTA
42845918 AATGATTATTTTAAAAAATT-AAATTTGAAAGTA
1 AATGATT-TTTT-AAAAATTGAAATTTGAAAGTA
42845951 A
1 A
42845952 TGGTAAATGA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
32 7 0.23
33 11 0.37
34 12 0.40
ACGTcount: A:0.48, C:0.02, G:0.11, T:0.39
Consensus pattern (32 bp):
AATGATTTTTTAAAAATTGAAATTTGAAAGTA
Found at i:42848422 original size:28 final size:28
Alignment explanation
Indices: 42848382--42848437 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
42848372 TAAAAATTTT
42848382 TGTTCAATCATAAGTAAACATGATATTA
1 TGTTCAATCATAAGTAAACATGATATTA
42848410 TGTTCAATCATAAGTAAACATGATATTA
1 TGTTCAATCATAAGTAAACATGATATTA
42848438 ACTTTTGAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.43, C:0.11, G:0.11, T:0.36
Consensus pattern (28 bp):
TGTTCAATCATAAGTAAACATGATATTA
Found at i:42858822 original size:23 final size:23
Alignment explanation
Indices: 42858759--42858822 Score: 92
Period size: 23 Copynumber: 2.7 Consensus size: 23
42858749 ACATTGTTTG
42858759 TGAACATGTTCAATTATATGTTCA
1 TGAACATGTTCAATTA-ATGTTCA
**
42858783 TGAACATGTTCGTTTAATGTTCA
1 TGAACATGTTCAATTAATGTTCA
*
42858806 TGAACATATTCAATTAA
1 TGAACATGTTCAATTAA
42858823 GTTAAATGAA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
23 21 0.60
24 14 0.40
ACGTcount: A:0.34, C:0.12, G:0.12, T:0.41
Consensus pattern (23 bp):
TGAACATGTTCAATTAATGTTCA
Found at i:42862630 original size:18 final size:18
Alignment explanation
Indices: 42862593--42862630 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
42862583 TTGTGAGGGG
* *
42862593 GATATGGGAAGTGAGGAA
1 GATATGGGAAGTCAGAAA
42862611 GATATGGGAAGTCAGAAA
1 GATATGGGAAGTCAGAAA
42862629 GA
1 GA
42862631 ATCATGTGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.42, C:0.03, G:0.39, T:0.16
Consensus pattern (18 bp):
GATATGGGAAGTCAGAAA
Found at i:42866366 original size:14 final size:14
Alignment explanation
Indices: 42866347--42866375 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
42866337 GTCCAAGTTA
42866347 CAAAAATCGCCATT
1 CAAAAATCGCCATT
42866361 CAAAAATCGCCATT
1 CAAAAATCGCCATT
42866375 C
1 C
42866376 GGGCGAATTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.31, G:0.07, T:0.21
Consensus pattern (14 bp):
CAAAAATCGCCATT
Found at i:42870065 original size:24 final size:24
Alignment explanation
Indices: 42870038--42870083 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
42870028 CTAATTAAAT
* *
42870038 TTTATAAATAATTAATATTTATTG
1 TTTAAAAATAATTAAAATTTATTG
*
42870062 TTTAAAAATATTTAAAATTTAT
1 TTTAAAAATAATTAAAATTTAT
42870084 ATTTCAGATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (24 bp):
TTTAAAAATAATTAAAATTTATTG
Found at i:42880303 original size:4 final size:4
Alignment explanation
Indices: 42880294--42880324 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
42880284 TTGAACATAT
42880294 AAAC AAAC AAAC AAAC AAAC AAAC AAAC AAA
1 AAAC AAAC AAAC AAAC AAAC AAAC AAAC AAA
42880325 TAAATCGACC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.77, C:0.23, G:0.00, T:0.00
Consensus pattern (4 bp):
AAAC
Found at i:42882694 original size:129 final size:129
Alignment explanation
Indices: 42882497--42882914 Score: 572
Period size: 129 Copynumber: 3.2 Consensus size: 129
42882487 ATGCGATCCA
* ** ** *
42882497 CTCTACTGCAAATTCAGAGAGATAAGATCCATCATTTTAATCCGCTCTACTGCAACTTCAGGGAG
1 CTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAG
* * *
42882562 ATAGGATTGGCTTCTTCTGTCTGCTTCACTGCAACTTCAGGGAGATAAGATTGGATGCGATCTG
66 ATAGGATTGGTTTCTTTTGTCTGCTTCACTGCAACTTCAGGGAGATAAGATTGGATGAGATCTG
* * * *
42882626 TTATACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGTAACTTTAGGGAG
1 CTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAG
* * ** * *
42882691 ATAGGATTGGTTTCTTTTGTCTTC-TCTACTACTGCTT-AGGGATATCAGACTT-GATGAGATCT
66 ATAGGATTGGTTTCTTTTGTCTGCTTC-ACTGCAACTTCAGGGAGATAAGA-TTGGATGAGATCT
42882753 G
129 G
*
42882754 CTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGAGAG
1 CTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAG
* * * * *
42882819 ATAGGATTGGTTTCTTTTGTCTGCTCCACTGCAACCTCAGAGAGATAAGACTGGATGTGATCTG
66 ATAGGATTGGTTTCTTTTGTCTGCTTCACTGCAACTTCAGGGAGATAAGATTGGATGAGATCTG
42882883 CTCTACTGCAACTTCAGAGAGATAAGATCTGT
1 CTCTACTGCAACTTCAGAGAGATAAGATCTGT
42882915 AATGTATGGC
Statistics
Matches: 249, Mismatches: 35, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
128 112 0.45
129 137 0.55
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (129 bp):
CTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAG
ATAGGATTGGTTTCTTTTGTCTGCTTCACTGCAACTTCAGGGAGATAAGATTGGATGAGATCTG
Found at i:42882821 original size:44 final size:44
Alignment explanation
Indices: 42882497--42882914 Score: 215
Period size: 44 Copynumber: 9.7 Consensus size: 44
42882487 ATGCGATCCA
* ** ** *
42882497 CTCTACTGCAAATTCAGAGAGATAAGATCCATCATTTTAATCCG
1 CTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCTG
* * * **
42882541 CTCTACTGCAACTTCAGGGAGATAGGAT-TG-GCTTCTTCTGTCTG
1 CTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTT-TT-AATCTG
* * ***
42882585 CT-TCACTGCAACTTCAGGGAGATAAGA--T-TGGATGCGATCTG
1 CTCT-ACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCTG
* * *
42882626 TTATACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCG
1 CTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCTG
* * * * * * ** *
42882670 CTCCACTGTAACTTTAGGGAGATAGGAT-TG-GTTTCTTTTGTCTT
1 CTCTACTGCAACTTCAGAGAGATAAGATCTGTG-GT-TTTAATCTG
* ** * * * * *
42882714 CTCTACTACTGCTT-AGGGATATCAGA-CT-T-G-ATGAGATCTG
1 CTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA-ATCTG
*
42882754 CTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCG
1 CTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCTG
* * * **
42882798 CTCCACTGCAACTTCAGAGAGATAGGAT-TG-GTTTCTTTTGTCTG
1 CTCTACTGCAACTTCAGAGAGATAAGATCTGTG-GT-TTTAATCTG
* * * * *
42882842 CTCCACTGCAACCTCAGAGAGATAAGA-C--TGGATGTGATCTG
1 CTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCTG
42882883 CTCTACTGCAACTTCAGAGAGATAAGATCTGT
1 CTCTACTGCAACTTCAGAGAGATAAGATCTGT
42882915 AATGTATGGC
Statistics
Matches: 275, Mismatches: 74, Indels: 50
0.69 0.19 0.13
Matches are distributed among these distances:
39 1 0.00
40 14 0.05
41 67 0.24
42 8 0.03
43 25 0.09
44 158 0.57
45 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (44 bp):
CTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCTG
Found at i:42883021 original size:50 final size:50
Alignment explanation
Indices: 42882921--42883083 Score: 209
Period size: 50 Copynumber: 3.2 Consensus size: 50
42882911 CTGTAATGTA
* * * * * * *
42882921 TGGCTTCAATCTTTTAAATTTCAATGTCGGGGGAAGCAAGATTCACCGTTG
1 TGGCTTTAATCTTTTTAACTGCAATGTC-GAGGAAGCAAGATTTATCGTTG
* *
42882972 TAGCTTTAATCTTTTTAACTGCATTGTCGAGGAAGCAAGATTTATCGTTG
1 TGGCTTTAATCTTTTTAACTGCAATGTCGAGGAAGCAAGATTTATCGTTG
* * *
42883022 TGGCTTTAATCTTTTTAGCTGCAATGTCGAGAAAGCAAGATTTTTCGTTG
1 TGGCTTTAATCTTTTTAACTGCAATGTCGAGGAAGCAAGATTTATCGTTG
42883072 TGGCTTTAATCT
1 TGGCTTTAATCT
42883084 GCTCCACTGC
Statistics
Matches: 98, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
50 76 0.78
51 22 0.22
ACGTcount: A:0.25, C:0.15, G:0.21, T:0.39
Consensus pattern (50 bp):
TGGCTTTAATCTTTTTAACTGCAATGTCGAGGAAGCAAGATTTATCGTTG
Found at i:42883144 original size:44 final size:44
Alignment explanation
Indices: 42883080--42883986 Score: 367
Period size: 44 Copynumber: 20.8 Consensus size: 44
42883070 TGTGGCTTTA
*
42883080 ATCTGCTCCACTGCAACCTCAGGGAGATAAGATCTACTTCTTCG
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTACTTCTTCG
* * * ** *
42883124 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGA-C--CTGATGCG
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTACTTCTTCG
** * * * **
42883165 ATCCACTCTACTGTAACTTCAGAGAGATAAGATCTA-TTACTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTACTT-CTTCG
** * * * * * ** *
42883209 ATCCAC-CTCACTACAATTTCAGGGAGATAGGATTTTCGGCTTCA
1 ATCTGCTC-CACTGCAACTTCAGGGAGATAAGATCTACTTCTTCG
* * * * *
42883253 ATCTGCTCCACTGCAACCTCAAGGAGATAAGATTTGCCATCTTCG
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCT-ACTTCTTCG
* * * *
42883298 ATCTGC-CTTACTACAACTTCAGGGGGATAAGATCTGCTTCTTCG
1 ATCTGCTC-CACTGCAACTTCAGGGAGATAAGATCTACTTCTTCG
** * * ** *
42883342 GCCTGCTTCGCTGCAACCTT-AGGGAGATAAGA-C--CTGATGCG
1 ATCTGCTCCACTGCAA-CTTCAGGGAGATAAGATCTACTTCTTCG
** * ** **
42883383 ATCCACTCTACTGCAACTTCAAAGAGATAAGATCTA-TTACTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTACTT-CTTCG
* * * * * * *
42883427 ATCCGCTCAACTACAATTTCAAGGAGATAGGAT-TA-TTAGCTTCA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTACTT--CTTCG
* * * **
42883471 ATCTGCTCCACTGCAACCTCAGGGAGATAAGATTTTCCAGCTTCG
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TCTACTTCTTCG
* * * *
42883516 ATCTGCCCCACTGCAACTTCAGGGGGATAAGATATGCTTCTTC-
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTACTTCTTCG
* * * ** *
42883559 AGTCTACTCCGCTGCAACCTCAGGGAGATAAGA-C--CTGATGCG
1 A-TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTACTTCTTCG
** * * **
42883601 ATCCACTCTACTGCAACTTCAGAGAGATAAGATCTA-TTACTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTACTT-CTTCG
* * * * * * *
42883645 ATCCGCTCAACTACAATTTTAGGGAGATAGGAT-TA-TTGACTTCA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTACTT--CTTCG
* * * * *
42883689 ATCTGCTCCACTACAACCTCAGGGAGATAAGATTTTCCATCTTCG
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TCTACTTCTTCG
* * * *
42883734 ATCTGCCCCACTACAACTTTAGAGG-GATAAGATCTGCTTCTTCG
1 ATCTGCTCCACTGCAACTTCAG-GGAGATAAGATCTACTTCTTCG
* ** * * ** *
42883778 GTCTGCTCCGTTGCAACCTCAGGGAGATAA-AAC--CTGATGCG
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTACTTCTTCG
** ** * * *
42883819 ATCCACTATACTTCAACTTCAGAGAGATAAGATCTA-TTACTT-T
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTACTT-CTTCG
* * * * ** *
42883862 AGTCCGCTCTACTACAACTTCAGGGAGATAGGAT-TATCGGCTTCA
1 A-TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTA-CTTCTTCG
* * *
42883907 ATCTGCTCCACTGCAACCTT-AGGGAGATAAGATTTGCCATCTTCG
1 ATCTGCTCCACTGCAA-CTTCAGGGAGATAAGATCT-ACTTCTTCG
* * *
42883952 ATCTGCCCCACTTCAACTTCAGGGGGATAAGATCT
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCT
42883987 GCTATTTCCA
Statistics
Matches: 633, Mismatches: 186, Indels: 87
0.70 0.21 0.10
Matches are distributed among these distances:
40 3 0.00
41 108 0.17
42 6 0.01
43 23 0.04
44 350 0.55
45 138 0.22
46 4 0.01
47 1 0.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (44 bp):
ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTACTTCTTCG
Found at i:42883483 original size:218 final size:218
Alignment explanation
Indices: 42883080--42883989 Score: 1446
Period size: 218 Copynumber: 4.2 Consensus size: 218
42883070 TGTGGCTTTA
* * * * *
42883080 ATCTGCTCCACTGCAACCTCAGGGAGATAAGATCTACTTCTTCGGTCTGCTCCGCTGCAACCTCA
1 ATCTGCCCCACTACAACTTCAGGGGGATAAGATCTGCTTCTTCGGTCTGCTCCGCTGCAACCTCA
*
42883145 GGGAGATAAGACCTGATGCGATCCACTCTACTGTAACTTCAGAGAGATAAGATCTATTACTTTAA
66 GGGAGATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAA
*
42883210 TCCACCTC-ACTACAATTTCAGGGAGATAGGATT-TTCGGCTTCAATCTGCTCCACTGCAACCTC
131 TCC-GCTCAACTACAATTTCAGGGAGATAGGATTATT-GGCTTCAATCTGCTCCACTGCAACCTC
*
42883273 AAGGAGATAAGATTTGCCATCTTCG
194 AGGGAGATAAGATTTGCCATCTTCG
** * * *
42883298 ATCTGCCTTACTACAACTTCAGGGGGATAAGATCTGCTTCTTCGGCCTGCTTCGCTGCAACCTTA
1 ATCTGCCCCACTACAACTTCAGGGGGATAAGATCTGCTTCTTCGGTCTGCTCCGCTGCAACCTCA
*
42883363 GGGAGATAAGACCTGATGCGATCCACTCTACTGCAACTTCAAAGAGATAAGATCTATTACTTTAA
66 GGGAGATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAA
* *
42883428 TCCGCTCAACTACAATTTCAAGGAGATAGGATTATTAGCTTCAATCTGCTCCACTGCAACCTCAG
131 TCCGCTCAACTACAATTTCAGGGAGATAGGATTATTGGCTTCAATCTGCTCCACTGCAACCTCAG
* *
42883493 GGAGATAAGATTTTCCAGCTTCG
196 GGAGATAAGATTTGCCATCTTCG
* * * *
42883516 ATCTGCCCCACTGCAACTTCAGGGGGATAAGATATGCTTCTTCAGTCTACTCCGCTGCAACCTCA
1 ATCTGCCCCACTACAACTTCAGGGGGATAAGATCTGCTTCTTCGGTCTGCTCCGCTGCAACCTCA
42883581 GGGAGATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAA
66 GGGAGATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAA
* * *
42883646 TCCGCTCAACTACAATTTTAGGGAGATAGGATTATTGACTTCAATCTGCTCCACTACAACCTCAG
131 TCCGCTCAACTACAATTTCAGGGAGATAGGATTATTGGCTTCAATCTGCTCCACTGCAACCTCAG
*
42883711 GGAGATAAGATTTTCCATCTTCG
196 GGAGATAAGATTTGCCATCTTCG
* * *
42883734 ATCTGCCCCACTACAACTTTAGAGGGATAAGATCTGCTTCTTCGGTCTGCTCCGTTGCAACCTCA
1 ATCTGCCCCACTACAACTTCAGGGGGATAAGATCTGCTTCTTCGGTCTGCTCCGCTGCAACCTCA
* * * *
42883799 GGGAGATAAAACCTGATGCGATCCACTATACTTCAACTTCAGAGAGATAAGATCTATTACTTTAG
66 GGGAGATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAA
* * * *
42883864 TCCGCTCTACTACAACTTCAGGGAGATAGGATTATCGGCTTCAATCTGCTCCACTGCAACCTTAG
131 TCCGCTCAACTACAATTTCAGGGAGATAGGATTATTGGCTTCAATCTGCTCCACTGCAACCTCAG
42883929 GGAGATAAGATTTGCCATCTTCG
196 GGAGATAAGATTTGCCATCTTCG
*
42883952 ATCTGCCCCACTTCAACTTCAGGGGGATAAGATCTGCT
1 ATCTGCCCCACTACAACTTCAGGGGGATAAGATCTGCT
42883990 ATTTCCAACC
Statistics
Matches: 634, Mismatches: 56, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
217 3 0.00
218 629 0.99
219 2 0.00
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (218 bp):
ATCTGCCCCACTACAACTTCAGGGGGATAAGATCTGCTTCTTCGGTCTGCTCCGCTGCAACCTCA
GGGAGATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAA
TCCGCTCAACTACAATTTCAGGGAGATAGGATTATTGGCTTCAATCTGCTCCACTGCAACCTCAG
GGAGATAAGATTTGCCATCTTCG
Found at i:42885461 original size:354 final size:354
Alignment explanation
Indices: 42884812--42885876 Score: 2085
Period size: 354 Copynumber: 3.0 Consensus size: 354
42884802 AAGAGAAAGT
42884812 CCAAATTTAGACTCTTCCTTCTCAAATTTCTAACCTTTAAATTTGGTGTGTTCTAAACAATAGTC
1 CCAAATTTAGACTCTTCCTTCTCAAATTTCTAACCTTTAAATTTGGTGTGTTCTAAACAATAGTC
*
42884877 CTGTTTCAGGTTCTTATATTATTTAGAAACTTTTCAGAGTAATATGCAAAACTTCTTTTGTGAAA
66 CTATTTCAGGTTCTTATATTATTTAGAAACTTTTCAGAGTAATATGCAAAACTTCTTTTGTGAAA
42884942 GTTTTATTAGTCCCGTAATCATTATTCCAATGCAACATGCTTGCAAAAAAAGGTCATAACAATGG
131 GTTTTATTAGTCCCGTAATCATTATTCCAATGCAACATGCTTGCAAAAAAAGGTCATAACAATGG
42885007 ATAAGAATAAAGTTGGTTCTGGGCATAGCTCAAAATGAATAAATTATCACAAATAGTAAAGAAGG
196 ATAAGAATAAAGTTGGTTCTGGGCATAGCTCAAAATGAATAAATTATCACAAATAGTAAAGAAGG
42885072 ATAATAAAGAAATTGATTGGGAATGTATATCTTGGAAAAGAAAAAAATATTCCAAGAACAACAAA
261 ATAATAAAGAAATTGATTGGGAATGTATATCTTGGAAAAGAAAAAAATATTCCAAGAACAACAAA
*
42885137 TTCAATATAAATAATATGATAATTGAGTG
326 TTCAATATAAATAATATGAGAATTGAGTG
42885166 CCAAATTTAGACTCTTCCTTCTCAAATTTCTAACCTTTAAATTTGGTGTGTTCTAAACAATAGTC
1 CCAAATTTAGACTCTTCCTTCTCAAATTTCTAACCTTTAAATTTGGTGTGTTCTAAACAATAGTC
42885231 CTATTTCAGGTTCTTATATTATTTAGAAACTTTTCAGAGTAATATGCAAAACTTCTTTTGTGAAA
66 CTATTTCAGGTTCTTATATTATTTAGAAACTTTTCAGAGTAATATGCAAAACTTCTTTTGTGAAA
42885296 GTTTTATTAGTCCCGTAATCATTATTCCAATGCAACATGCTTGCAAAAAAAGGTCATAACAATGG
131 GTTTTATTAGTCCCGTAATCATTATTCCAATGCAACATGCTTGCAAAAAAAGGTCATAACAATGG
*
42885361 ATAAGAATAAAGTTGGTTCTGGGCATAGCTCAAAATGAATAAATCATCACAAATAGTAAAGAAGG
196 ATAAGAATAAAGTTGGTTCTGGGCATAGCTCAAAATGAATAAATTATCACAAATAGTAAAGAAGG
42885426 ATAATAAAGAAATTGATTGGGAATGTATATCTTGGAAAAGAAAAAAATATTCCAAGAACAACAAA
261 ATAATAAAGAAATTGATTGGGAATGTATATCTTGGAAAAGAAAAAAATATTCCAAGAACAACAAA
42885491 TTCAATATAAATAATATGAGAATTGAGTG
326 TTCAATATAAATAATATGAGAATTGAGTG
42885520 CCAAATTTAGACTCTTCCTTCTCAAATTTCTAACCTTTAAATTTGGTGTGTTCTAAACAATAGTC
1 CCAAATTTAGACTCTTCCTTCTCAAATTTCTAACCTTTAAATTTGGTGTGTTCTAAACAATAGTC
42885585 CTATTTCAGGTTCTTATATTATTTAGAAACTTTTCAGAGTAATATGCAAAACTTCTTTTGTGAAA
66 CTATTTCAGGTTCTTATATTATTTAGAAACTTTTCAGAGTAATATGCAAAACTTCTTTTGTGAAA
42885650 GTTTTATTAGTCCCGTAATCATTATTCCAATGCAACATGCTTGCAAAAAAAAGGTCATAACAATG
131 GTTTTATTAGTCCCGTAATCATTATTCCAATGCAACATGCTTGC-AAAAAAAGGTCATAACAATG
*
42885715 GATAAGAATAAAGTTGGTTCTGGGCATAACTCAAAATGAATAAATTATCACAAATAGTAAAGAAG
195 GATAAGAATAAAGTTGGTTCTGGGCATAGCTCAAAATGAATAAATTATCACAAATAGTAAAGAAG
42885780 GATAATAAAGAAATTGATTGGGAATGTATATCTTGGAAAAGAAAAAAATATTCCAAGAACAACAA
260 GATAATAAAGAAATTGATTGGGAATGTATATCTTGGAAAAGAAAAAAATATTCCAAGAACAACAA
42885845 ATTCAATATAAATAATATGAGAATTGAGTG
325 ATTCAATATAAATAATATGAGAATTGAGTG
42885875 CC
1 CC
42885877 CTAGATATCG
Statistics
Matches: 705, Mismatches: 5, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
354 525 0.74
355 180 0.26
ACGTcount: A:0.40, C:0.13, G:0.15, T:0.32
Consensus pattern (354 bp):
CCAAATTTAGACTCTTCCTTCTCAAATTTCTAACCTTTAAATTTGGTGTGTTCTAAACAATAGTC
CTATTTCAGGTTCTTATATTATTTAGAAACTTTTCAGAGTAATATGCAAAACTTCTTTTGTGAAA
GTTTTATTAGTCCCGTAATCATTATTCCAATGCAACATGCTTGCAAAAAAAGGTCATAACAATGG
ATAAGAATAAAGTTGGTTCTGGGCATAGCTCAAAATGAATAAATTATCACAAATAGTAAAGAAGG
ATAATAAAGAAATTGATTGGGAATGTATATCTTGGAAAAGAAAAAAATATTCCAAGAACAACAAA
TTCAATATAAATAATATGAGAATTGAGTG
Found at i:42886178 original size:7 final size:7
Alignment explanation
Indices: 42886159--42886211 Score: 56
Period size: 7 Copynumber: 7.4 Consensus size: 7
42886149 TTAGCCTCTC
42886159 CATTTTT
1 CATTTTT
42886166 -ACTTTTT
1 CA-TTTTT
42886173 CATTTTTT
1 CA-TTTTT
*
42886181 AATTTTT
1 CATTTTT
42886188 CA-TTTT
1 CATTTTT
42886194 CATTTTTT
1 CA-TTTTT
42886202 CATTTTT
1 CATTTTT
42886209 CAT
1 CAT
42886212 ACTTTTTTGA
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
6 7 0.18
7 19 0.49
8 13 0.33
ACGTcount: A:0.17, C:0.13, G:0.00, T:0.70
Consensus pattern (7 bp):
CATTTTT
Found at i:42886178 original size:14 final size:14
Alignment explanation
Indices: 42886159--42886208 Score: 64
Period size: 14 Copynumber: 3.5 Consensus size: 14
42886149 TTAGCCTCTC
*
42886159 CATTTTTACTTTTT
1 CATTTTTAATTTTT
42886173 CATTTTTTAATTTTT
1 CA-TTTTTAATTTTT
* *
42886188 CATTTTCATTTTTT
1 CATTTTTAATTTTT
42886202 CATTTTT
1 CATTTTT
42886209 CATACTTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
14 18 0.58
15 13 0.42
ACGTcount: A:0.16, C:0.12, G:0.00, T:0.72
Consensus pattern (14 bp):
CATTTTTAATTTTT
Found at i:42886179 original size:8 final size:8
Alignment explanation
Indices: 42886168--42886208 Score: 52
Period size: 8 Copynumber: 5.5 Consensus size: 8
42886158 CCATTTTTAC
42886168 TTTTTCAT
1 TTTTTCAT
*
42886176 TTTTT-AA
1 TTTTTCAT
42886183 TTTTTCA-
1 TTTTTCAT
42886190 -TTTTCAT
1 TTTTTCAT
42886197 TTTTTCAT
1 TTTTTCAT
42886205 TTTT
1 TTTT
42886209 CATACTTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
6 6 0.21
7 6 0.21
8 17 0.59
ACGTcount: A:0.15, C:0.10, G:0.00, T:0.76
Consensus pattern (8 bp):
TTTTTCAT
Found at i:42886181 original size:15 final size:15
Alignment explanation
Indices: 42886161--42886218 Score: 64
Period size: 15 Copynumber: 3.8 Consensus size: 15
42886151 AGCCTCTCCA
42886161 TTTTTACTTTTTCAT
1 TTTTTACTTTTTCAT
*
42886176 TTTTTAATTTTTCA-
1 TTTTTACTTTTTCAT
* *
42886190 TTTTCATTTTTTCAT
1 TTTTTACTTTTTCAT
42886205 TTTTCATACTTTTT
1 TTTT--TACTTTTT
42886219 TGACTCAGAG
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
14 12 0.34
15 17 0.49
17 6 0.17
ACGTcount: A:0.16, C:0.12, G:0.00, T:0.72
Consensus pattern (15 bp):
TTTTTACTTTTTCAT
Found at i:42886208 original size:21 final size:21
Alignment explanation
Indices: 42886159--42886211 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
42886149 TTAGCCTCTC
*
42886159 CATTTTTACTTTTTCATTTTTT
1 CATTTTT-CATTTTCATTTTTT
*
42886181 AATTTTTCATTTTCATTTTTT
1 CATTTTTCATTTTCATTTTTT
42886202 CATTTTTCAT
1 CATTTTTCAT
42886212 ACTTTTTTGA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
21 22 0.79
22 6 0.21
ACGTcount: A:0.17, C:0.13, G:0.00, T:0.70
Consensus pattern (21 bp):
CATTTTTCATTTTCATTTTTT
Found at i:42887125 original size:6 final size:6
Alignment explanation
Indices: 42887095--42887163 Score: 68
Period size: 6 Copynumber: 11.7 Consensus size: 6
42887085 CTTCTCTCTT
* * * * *
42887095 TTTTCA TTTTCA TTTTGA CTTTGA TTTTGA TTTT-T TTTTGC TTTTGA
1 TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA
* *
42887142 CTTTGA TTTTTA TTTTGA TTTT
1 TTTTGA TTTTGA TTTTGA TTTT
42887164 TTTCTTCCCC
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
5 4 0.08
6 48 0.92
ACGTcount: A:0.13, C:0.07, G:0.10, T:0.70
Consensus pattern (6 bp):
TTTTGA
Found at i:42887133 original size:35 final size:35
Alignment explanation
Indices: 42887093--42887166 Score: 96
Period size: 35 Copynumber: 2.1 Consensus size: 35
42887083 TTCTTCTCTC
*
42887093 TTTTTT-CATTTTCATTTTGACTTTGATTTTGATTT
1 TTTTTTGC-TTTTCACTTTGACTTTGATTTTGATTT
* * *
42887128 TTTTTTGCTTTTGACTTTGATTTTTATTTTGATTT
1 TTTTTTGCTTTTCACTTTGACTTTGATTTTGATTT
42887163 TTTT
1 TTTT
42887167 CTTCCCCCTT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
35 33 0.97
36 1 0.03
ACGTcount: A:0.12, C:0.07, G:0.09, T:0.72
Consensus pattern (35 bp):
TTTTTTGCTTTTCACTTTGACTTTGATTTTGATTT
Found at i:42887140 original size:23 final size:24
Alignment explanation
Indices: 42887100--42887163 Score: 85
Period size: 23 Copynumber: 2.7 Consensus size: 24
42887090 CTCTTTTTTC
* * *
42887100 ATTTTCATTTTGACTTTGATTTTG
1 ATTTTTATTTTGATTTTGACTTTG
*
42887124 ATTTTT-TTTTGCTTTTGACTTTG
1 ATTTTTATTTTGATTTTGACTTTG
42887147 ATTTTTATTTTGATTTT
1 ATTTTTATTTTGATTTT
42887164 TTTCTTCCCC
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
23 20 0.59
24 14 0.41
ACGTcount: A:0.14, C:0.06, G:0.11, T:0.69
Consensus pattern (24 bp):
ATTTTTATTTTGATTTTGACTTTG
Found at i:42891320 original size:4 final size:4
Alignment explanation
Indices: 42891311--42891340 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
42891301 GGAATAATTG
*
42891311 AACA AACA AACA AACA AACA AATA AACA AA
1 AACA AACA AACA AACA AACA AACA AACA AA
42891341 TAAATCGACC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.77, C:0.20, G:0.00, T:0.03
Consensus pattern (4 bp):
AACA
Found at i:42891345 original size:12 final size:12
Alignment explanation
Indices: 42891281--42891345 Score: 58
Period size: 12 Copynumber: 5.2 Consensus size: 12
42891271 ACCACATTTT
42891281 AATAAACAAATA
1 AATAAACAAATA
*
42891293 AATGAAACGGAATA
1 AAT-AAAC-AAATA
* * *
42891307 ATTGAACAAACA
1 AATAAACAAATA
* *
42891319 AACAAACAAACA
1 AATAAACAAATA
42891331 AATAAACAAATA
1 AATAAACAAATA
42891343 AAT
1 AAT
42891346 CGACCACACC
Statistics
Matches: 41, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
12 28 0.68
13 7 0.17
14 6 0.15
ACGTcount: A:0.68, C:0.12, G:0.06, T:0.14
Consensus pattern (12 bp):
AATAAACAAATA
Found at i:42891554 original size:13 final size:13
Alignment explanation
Indices: 42891536--42891566 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
42891526 TAACATAGTT
*
42891536 TAAAATGAATAAA
1 TAAAATAAATAAA
42891549 TAAAATAAATAAA
1 TAAAATAAATAAA
42891562 TAAAA
1 TAAAA
42891567 AAAACACAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (13 bp):
TAAAATAAATAAA
Done.