Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67659327
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 461372 characters in sequence are not A, C, G, or T
File 15 of 216
Found at i:4753164 original size:41 final size:40
Alignment explanation
Indices: 4753119--4753204 Score: 104
Period size: 40 Copynumber: 2.1 Consensus size: 40
4753109 CGACCAGCCC
4753119 AAATATTTAATAAATATA-TATTTTT-TAATTTTTTAATTTTA
1 AAATATTT-ATAAA-ATACT-TTTTTATAATTTTTTAATTTTA
* * *
4753160 AAATATTTTTAAAATACTTTTTTATTATTTTTTATTTTTA
1 AAATATTTATAAAATACTTTTTTATAATTTTTTAATTTTA
4753200 AAATA
1 AAATA
4753205 AATTTTTGGT
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
39 8 0.20
40 24 0.60
41 8 0.20
ACGTcount: A:0.40, C:0.01, G:0.00, T:0.59
Consensus pattern (40 bp):
AAATATTTATAAAATACTTTTTTATAATTTTTTAATTTTA
Found at i:4756498 original size:21 final size:22
Alignment explanation
Indices: 4756472--4756518 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
4756462 CTCTGCTCAA
*
4756472 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
4756493 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
4756515 ACTC
1 ACTC
4756519 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:4760680 original size:2 final size:2
Alignment explanation
Indices: 4760673--4760703 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
4760663 TACTTTCTTT
4760673 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
4760704 TATTTACATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:4762870 original size:29 final size:27
Alignment explanation
Indices: 4762817--4762882 Score: 80
Period size: 29 Copynumber: 2.4 Consensus size: 27
4762807 TCTTTACAAA
4762817 TTTAAAATTTAGTCTTTATACTTTTACT
1 TTTAAAATTTAGTCTTTATACTTTT-CT
* *
4762845 TTTAGAAATTTAGTCCTTT-TATTTTTTT
1 TTTA-AAATTTAGT-CTTTATACTTTTCT
4762873 TTTAAAATTT
1 TTTAAAATTT
4762883 TAAAATCCAG
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
27 6 0.18
28 9 0.26
29 15 0.44
30 4 0.12
ACGTcount: A:0.27, C:0.08, G:0.05, T:0.61
Consensus pattern (27 bp):
TTTAAAATTTAGTCTTTATACTTTTCT
Found at i:4762884 original size:28 final size:28
Alignment explanation
Indices: 4762817--4762882 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 28
4762807 TCTTTACAAA
4762817 TTTAAAATTTAGTCTTTATACTTTTACT
1 TTTAAAATTTAGTCTTTATACTTTTACT
**
4762845 TTTAGAAATTTAGTCCTTT-TA-TTTTTTT
1 TTTA-AAATTTAGT-CTTTATACTTTTACT
4762873 TTTAAAATTT
1 TTTAAAATTT
4762883 TAAAATCCAG
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
27 6 0.18
28 13 0.38
29 11 0.32
30 4 0.12
ACGTcount: A:0.27, C:0.08, G:0.05, T:0.61
Consensus pattern (28 bp):
TTTAAAATTTAGTCTTTATACTTTTACT
Found at i:4770637 original size:3 final size:3
Alignment explanation
Indices: 4770629--4770690 Score: 79
Period size: 3 Copynumber: 20.3 Consensus size: 3
4770619 ATGAAAAACC
* * *
4770629 ATA ATA ATA ATTA ATA ATA ATA ATA ATA ATA GTA ATA ATA ATT GTA
1 ATA ATA ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
4770675 ATA ATA AAA ATA ATA A
1 ATA ATA ATA ATA ATA A
4770691 GTCCGTTGTT
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
3 47 0.94
4 3 0.06
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:4771163 original size:15 final size:15
Alignment explanation
Indices: 4771143--4771181 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
4771133 TTTTCTCGAA
4771143 TCGAGTCAAAAAATT
1 TCGAGTCAAAAAATT
* *
4771158 TCGAGTTAAAAATTT
1 TCGAGTCAAAAAATT
4771173 TCGAGTCAA
1 TCGAGTCAA
4771182 TGTTGTGCTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.41, C:0.13, G:0.15, T:0.31
Consensus pattern (15 bp):
TCGAGTCAAAAAATT
Found at i:4779174 original size:21 final size:21
Alignment explanation
Indices: 4779132--4779189 Score: 66
Period size: 21 Copynumber: 2.8 Consensus size: 21
4779122 TTTTACCCAG
* *
4779132 AACCCCAAACTCTAAA-CCTA
1 AACCTCAAACTCCAAACCCTA
*
4779152 AATCCT-AAACTTCAAACCCTA
1 AA-CCTCAAACTCCAAACCCTA
4779173 AACCTCAAACTCCAAAC
1 AACCTCAAACTCCAAAC
4779190 TTCAACTCTA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
20 13 0.42
21 18 0.58
ACGTcount: A:0.45, C:0.38, G:0.00, T:0.17
Consensus pattern (21 bp):
AACCTCAAACTCCAAACCCTA
Found at i:4779189 original size:14 final size:15
Alignment explanation
Indices: 4779132--4779194 Score: 64
Period size: 14 Copynumber: 4.5 Consensus size: 15
4779122 TTTTACCCAG
*
4779132 AACCCCAAACT-CTA
1 AACCTCAAACTCCTA
4779146 AACCT-AAA-TCCTA
1 AACCTCAAACTCCTA
*
4779159 AACTTCAAAC-CCTA
1 AACCTCAAACTCCTA
4779173 AACCTCAAACTCC-A
1 AACCTCAAACTCCTA
*
4779187 AACTTCAA
1 AACCTCAA
4779195 CTCTAAATCT
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
12 1 0.02
13 10 0.24
14 28 0.68
15 2 0.05
ACGTcount: A:0.44, C:0.37, G:0.00, T:0.19
Consensus pattern (15 bp):
AACCTCAAACTCCTA
Found at i:4787534 original size:24 final size:23
Alignment explanation
Indices: 4787507--4787560 Score: 56
Period size: 24 Copynumber: 2.3 Consensus size: 23
4787497 AAAAAATTGT
4787507 ATAAAATTATTAAAATAAAATAAA
1 ATAAAATTATTAAAA-AAAATAAA
* * *
4787531 ATAAATATTTTTTAAAAAATTAAA
1 ATAAA-ATTATTAAAAAAAATAAA
4787555 A-AAAAT
1 ATAAAAT
4787561 ATACGAGGGC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
22 2 0.08
23 3 0.12
24 13 0.50
25 8 0.31
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (23 bp):
ATAAAATTATTAAAAAAAATAAA
Found at i:4792527 original size:3 final size:3
Alignment explanation
Indices: 4792519--4792559 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
4792509 CCTTCACTGA
4792519 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
4792560 ACCCATTTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:4795550 original size:3 final size:3
Alignment explanation
Indices: 4795542--4795567 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
4795532 TATACATTTT
4795542 ATC ATC ATC ATC ATC ATC ATC ATC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC AT
4795568 AATAATAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.31, G:0.00, T:0.35
Consensus pattern (3 bp):
ATC
Found at i:4796864 original size:5 final size:5
Alignment explanation
Indices: 4796854--4796882 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
4796844 AATTTACATA
4796854 ATAAT ATAAT ATAAT ATAAT ATAAT ATAA
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAA
4796883 ATGTTAAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
ATAAT
Found at i:4799338 original size:21 final size:20
Alignment explanation
Indices: 4799314--4799364 Score: 66
Period size: 21 Copynumber: 2.5 Consensus size: 20
4799304 GTAGTGGTGT
*
4799314 TGAGATTAATTATTATAGCGA
1 TGAGATTAA-TATTATAGCAA
*
4799335 TGAGATTAGATATTTTAGCAA
1 TGAGATTA-ATATTATAGCAA
4799356 TGAGATTAA
1 TGAGATTAA
4799365 AAACAGTTGT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
20 1 0.04
21 25 0.93
22 1 0.04
ACGTcount: A:0.39, C:0.04, G:0.20, T:0.37
Consensus pattern (20 bp):
TGAGATTAATATTATAGCAA
Found at i:4799541 original size:23 final size:23
Alignment explanation
Indices: 4799515--4799563 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
4799505 ATATGAAGAT
* *
4799515 AATTT-AAAATTGTTAATTATAAA
1 AATTTGAAAATT-TTAAATAAAAA
4799538 AATTTGAAAATTTTAAATAAAAA
1 AATTTGAAAATTTTAAATAAAAA
4799561 AAT
1 AAT
4799564 CAGATATAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 17 0.74
24 6 0.26
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (23 bp):
AATTTGAAAATTTTAAATAAAAA
Found at i:4800077 original size:27 final size:26
Alignment explanation
Indices: 4800033--4800086 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 26
4800023 ATAATAATGT
4800033 TATTTTAAAAATAAAAATAAAAATTA
1 TATTTTAAAAATAAAAATAAAAATTA
*
4800059 TATTTTAAAAATAAAAAATAAAGATTA
1 TATTTTAAAAAT-AAAAATAAAAATTA
4800086 T
1 T
4800087 TTAATAGAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 12 0.46
27 14 0.54
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (26 bp):
TATTTTAAAAATAAAAATAAAAATTA
Found at i:4801285 original size:16 final size:18
Alignment explanation
Indices: 4801246--4801279 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
4801236 TAAGTTTATA
4801246 ATATTT-TATATTATGTT
1 ATATTTATATATTATGTT
*
4801263 ATTTTTATATATTATGT
1 ATATTTATATATTATGT
4801280 AATTTAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (18 bp):
ATATTTATATATTATGTT
Found at i:4804533 original size:50 final size:49
Alignment explanation
Indices: 4804422--4804668 Score: 172
Period size: 50 Copynumber: 4.8 Consensus size: 49
4804412 ATTTGGGTAA
* * *
4804422 AGAGATCCCATGTAAGACCATGTCTGTGACATGGCACTGGCATCATTGAGGTCATG
1 AGAGGTCCCATGTAAGACCATGTCTG-GACATGGCATTGGCA-C--CGA-G--ATG
*
4804478 AGAGGTCCCATGTAAGACCATGTCTAGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCT-GGACATGGCATTGGCACCGAGATG
** * * * *
4804528 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGACATGGGCACCAATATG
1 AGAGGTCCCATGTAAGACCATGTCT-GGACATGGCATTGGCACCGAGATG
** * * * ** * *
4804578 AGAACTCCCATGTAAGACCATATCTGGGATATGACATTGGCA-ATACAAG
1 AGAGGTCCCATGTAAGACCATGTCT-GGACATGGCATTGGCACCGAGATG
* ** * *
4804627 AAACATCCCATGGAAGACCATGTCTGGGACATGGCTTTGGCA
1 AGAGGTCCCATGTAAGACCATGTCT-GGACATGGCATTGGCA
4804669 TGTTATTATC
Statistics
Matches: 159, Mismatches: 31, Indels: 9
0.80 0.16 0.05
Matches are distributed among these distances:
49 37 0.23
50 80 0.50
52 1 0.01
53 2 0.01
55 1 0.01
56 37 0.23
57 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.27, T:0.21
Consensus pattern (49 bp):
AGAGGTCCCATGTAAGACCATGTCTGGACATGGCATTGGCACCGAGATG
Found at i:4804653 original size:49 final size:49
Alignment explanation
Indices: 4804541--4804659 Score: 143
Period size: 49 Copynumber: 2.4 Consensus size: 49
4804531 GGTCCCCCGT
* * *
4804541 AAGACCATGTCTGGGACATGACATGGGCACCAATATGAGAACTCCCATGT
1 AAGACCATGTCTGGGACATGACATGGGCA-CAACAAGAGAACTCCCATGG
* * *
4804591 AAGACCATATCTGGGATATGACATTGGCA-ATACAAGA-AACATCCCATGG
1 AAGACCATGTCTGGGACATGACATGGGCACA-ACAAGAGAAC-TCCCATGG
4804640 AAGACCATGTCTGGGACATG
1 AAGACCATGTCTGGGACATG
4804660 GCTTTGGCAT
Statistics
Matches: 59, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
48 4 0.07
49 29 0.49
50 26 0.44
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.20
Consensus pattern (49 bp):
AAGACCATGTCTGGGACATGACATGGGCACAACAAGAGAACTCCCATGG
Found at i:4807815 original size:34 final size:34
Alignment explanation
Indices: 4807743--4807816 Score: 87
Period size: 34 Copynumber: 2.2 Consensus size: 34
4807733 TAAGTGGCAA
* * *
4807743 TATCAGTGTGGGCCTTAGCCCATTACGGTAACTC
1 TATCAGGGTGGGCCTTAGCCCATTACAGTAACAC
* *
4807777 TATCAGGGTGGGCCTTAGCCCCATTTCAGT-ACAG
1 TATCAGGGTGGGCCTTAG-CCCATTACAGTAACAC
4807811 TATCAG
1 TATCAG
4807817 AGATGCATAT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
34 25 0.74
35 9 0.26
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (34 bp):
TATCAGGGTGGGCCTTAGCCCATTACAGTAACAC
Found at i:4816601 original size:50 final size:50
Alignment explanation
Indices: 4816484--4816780 Score: 224
Period size: 50 Copynumber: 5.8 Consensus size: 50
4816474 GATAATAACA
* * * * * * **
4816484 TGCCAAAGCCATGTCCCAGACATGGTCTTCCATAGGATG-TTTCTTGT-AT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-GCTCTCATCTCGG
* * * * * * *
4816533 TGCCAATGTCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATTGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGAGCTCTCATCTCGG
* * *
4816583 TGCCCATGTCATGTCCCAGACATGGTCTTAC--GGGAGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGAG--CTCTCATCTCGG
* ** *
4816633 TGCCAACGCCATGTCCTAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGAGCTCTCATCTCGG
* * * *
4816683 TGCCAACACCATGTCCTAGACATGGTCTTACATGGGACCTCTCATGATCTCAATGA
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGAGCTCTC---ATCTC---GG
* * *
4816739 TGCCAATGCCATGTCCCAGACATGGTCTTACGTGGGATCTCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGAGCTCT
4816781 TTACCCAAAT
Statistics
Matches: 205, Mismatches: 31, Indels: 17
0.81 0.12 0.07
Matches are distributed among these distances:
48 6 0.03
49 36 0.18
50 116 0.57
52 4 0.02
53 5 0.02
56 38 0.19
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.29
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGAGCTCTCATCTCGG
Found at i:4816676 original size:100 final size:102
Alignment explanation
Indices: 4816546--4816780 Score: 251
Period size: 100 Copynumber: 2.3 Consensus size: 102
4816536 CAATGTCATA
* * ** * * ***
4816546 TCCCAGATATGGTCTTACATGGGAGTTCTCATATTGGTGCCCATGTCATGTCCCAGACATGGTCT
1 TCCCAGACATGGTCTTACGTGGGACCTCTCATATCGGTGCCAACACCATGTCCCAGACATGGTCT
*
4816611 TAC-GGGAGACCTCTC-ATCTC-GGTGCCAACGCCATG
66 TACAGGG-GACCTCTCAATCTCAGATGCCAACGCCATG
* * * *
4816646 TCCTAGACATGGTCTTACGGGGGACCTCTCATCTCGGTGCCAACACCATGTCCTAGACATGGTCT
1 TCCCAGACATGGTCTTACGTGGGACCTCTCATATCGGTGCCAACACCATGTCCCAGACATGGTCT
* *
4816711 TACATGGGACCTCTCATGATCTCAATGATGCCAATGCCATG
66 TACAGGGGACCTCTCA--ATCTC-A-GATGCCAACGCCATG
*
4816752 TCCCAGACATGGTCTTACGTGGGATCTCT
1 TCCCAGACATGGTCTTACGTGGGACCTCT
4816781 TTACCCAAAT
Statistics
Matches: 109, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
100 63 0.58
101 2 0.02
103 5 0.05
106 39 0.36
ACGTcount: A:0.21, C:0.29, G:0.23, T:0.28
Consensus pattern (102 bp):
TCCCAGACATGGTCTTACGTGGGACCTCTCATATCGGTGCCAACACCATGTCCCAGACATGGTCT
TACAGGGGACCTCTCAATCTCAGATGCCAACGCCATG
Found at i:4824798 original size:29 final size:30
Alignment explanation
Indices: 4824738--4824798 Score: 70
Period size: 30 Copynumber: 2.1 Consensus size: 30
4824728 AAAACTTTTC
* * *
4824738 AAAAATACATAGAAAATTTAAAATTTAAAT
1 AAAAATACATAAAAAATTCAAAATGTAAAT
* *
4824768 AAAAATTCATAAAAAATTCAAAA-GTAGAT
1 AAAAATACATAAAAAATTCAAAATGTAAAT
4824797 AA
1 AA
4824799 GGTGAGAGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
29 6 0.23
30 20 0.77
ACGTcount: A:0.64, C:0.05, G:0.05, T:0.26
Consensus pattern (30 bp):
AAAAATACATAAAAAATTCAAAATGTAAAT
Found at i:4839049 original size:72 final size:72
Alignment explanation
Indices: 4838843--4839265 Score: 433
Period size: 72 Copynumber: 5.8 Consensus size: 72
4838833 TAATCAAGAC
* * * *
4838843 CAACCTTTAAAAAAGGTTAGGATAGATCCGTCGAAGGCAACCTTAAAAAGGTTGGGATAGAACTT
1 CAACCTTTAAAAAAGGTTGGGATA-AACCGTCTAAGGCAACCTTAAAAAGGTTGGGATAGACCTT
* *
4838908 GTGTGAGG
65 GTCTAAGG
* * * *
4838916 CAACATTCAAAAATA-GTTGGGATAGAGCCATCTAAGGCAACCTTAAAAAGGTTGGGATAGACCT
1 CAACCTTTAAAAA-AGGTTGGGATA-AACCGTCTAAGGCAACCTTAAAAAGGTTGGGATAGACCT
*
4838980 TGTCTAAGA
64 TGTCTAAGG
* * * * *
4838989 TAACCTATAAAAAAGGTTGGGATAAACCTGTC-CAGGTAACCTTAAAAAGGTTGGGATAGACCAT
1 CAACCTTTAAAAAAGGTTGGGATAAACC-GTCTAAGGCAACCTTAAAAAGGTTGGGATAGACCTT
*
4839053 ATCTAAGG
65 GTCTAAGG
* * * *
4839061 TAACCTTTAAAAAAGGTTGGGATAGACCCGTCAAAGGCAACCTTAAAAAGGTAGGGATAGA-CTT
1 CAACCTTTAAAAAAGGTTGGGATA-AACCGTCTAAGGCAACCTTAAAAAGGTTGGGATAGACCTT
*
4839125 GTCCAAGG
65 GTCTAAGG
* * * * *
4839133 CAACTTTTAAAAAA-GTTGGGATAAATCCGTTTAAGGTAACCTTAAAAAAGTTGGGATAAACCTT
1 CAACCTTTAAAAAAGGTTGGGATAAA-CCGTCTAAGGCAACCTTAAAAAGGTTGGGATAGACCTT
*
4839197 GTCTAAGA
65 GTCTAAGG
** * * * * *
4839205 CAATATTT-AAAAAGGTTAGGATAAACCTGTCTAAAGTATCCTTAAAAAGGTTGAGATAGAC
1 CAACCTTTAAAAAAGGTTGGGATAAACC-GTCTAAGGCAACCTTAAAAAGGTTGGGATAGAC
4839266 ATGAATAATG
Statistics
Matches: 292, Mismatches: 49, Indels: 19
0.81 0.14 0.05
Matches are distributed among these distances:
70 1 0.00
71 44 0.15
72 137 0.47
73 109 0.37
74 1 0.00
ACGTcount: A:0.39, C:0.14, G:0.22, T:0.25
Consensus pattern (72 bp):
CAACCTTTAAAAAAGGTTGGGATAAACCGTCTAAGGCAACCTTAAAAAGGTTGGGATAGACCTTG
TCTAAGG
Found at i:4839073 original size:145 final size:143
Alignment explanation
Indices: 4838837--4839190 Score: 415
Period size: 145 Copynumber: 2.4 Consensus size: 143
4838827 AAAACCTAAT
* * *
4838837 CAAGACCAACCTTTAAAAAAGGTTAGGATAGATCCGTCGAAGGCAACCTTAAAAAGGTTGGGATA
1 CAAGA-CAACCTTTAAAAAAGGTTGGGATA-AACCGTC-AAGGTAACCTTAAAAAGGTTGGGATA
* * * * * *
4838902 GAACTTGTGTGAGGCAACATTCAAAAATA-GTTGGGATAGAGCCATCTAAGGCAACCTTAAAAAG
63 GAACATATCTAAGGCAACATTCAAAAA-AGGTTGGGATAGACCCATCAAAGGCAACCTTAAAAAG
*
4838966 GTTGGGATAGACCTTGTC
127 GTAGGGATAGA-CTTGTC
* * * *
4838984 TAAGATAACCTATAAAAAAGGTTGGGATAAACCTGTCCAGGTAACCTTAAAAAGGTTGGGATAGA
1 CAAGACAACCTTTAAAAAAGGTTGGGATAAACC-GTCAAGGTAACCTTAAAAAGGTTGGGATAGA
* * * * *
4839049 CCATATCTAAGGTAACCTTTAAAAAAGGTTGGGATAGACCCGTCAAAGGCAACCTTAAAAAGGTA
65 ACATATCTAAGGCAACATTCAAAAAAGGTTGGGATAGACCCATCAAAGGCAACCTTAAAAAGGTA
4839114 GGGATAGACTTGTC
130 GGGATAGACTTGTC
* * * *
4839128 CAAGGCAACTTTTAAAAAA-GTTGGGATAAATCCGTTTAAGGTAACCTTAAAAAAGTTGGGATA
1 CAAGACAACCTTTAAAAAAGGTTGGGATAAA-CCG-TCAAGGTAACCTTAAAAAGGTTGGGATA
4839191 AACCTTGTCT
Statistics
Matches: 176, Mismatches: 27, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
143 12 0.07
144 48 0.27
145 88 0.50
146 24 0.14
147 4 0.02
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.23
Consensus pattern (143 bp):
CAAGACAACCTTTAAAAAAGGTTGGGATAAACCGTCAAGGTAACCTTAAAAAGGTTGGGATAGAA
CATATCTAAGGCAACATTCAAAAAAGGTTGGGATAGACCCATCAAAGGCAACCTTAAAAAGGTAG
GGATAGACTTGTC
Found at i:4844570 original size:41 final size:40
Alignment explanation
Indices: 4844518--4844816 Score: 105
Period size: 41 Copynumber: 7.2 Consensus size: 40
4844508 TTTGGTAAAT
* *
4844518 CGCCACTAATGTTAAGGTATTTAGCGGCGTTTCTATCCTAG
1 CGCCGCTAATGTTAAGGTATTTAGCGGCGTTTTTAT-CTAG
* *
4844559 CGCCGCTAATGTT--GTGAATTTTA-CTGGCGTTTTTATGTATG
1 CGCCGCTAATGTTAAG-GTA-TTTAGC-GGCGTTTTTATCTA-G
* ** * * * *
4844600 CGCCGCTATTGGTTGGGGGTGA--TAGTGGCGTGTTTTGGTCAAT
1 CGCCGCTAAT-GTT-AAGGT-ATTTAGCGGCGT-TTTT-ATCTAG
* * *
4844643 CGCCACTAATGTTAAGGTATTTAGCGGTGTTTCTATCCTAG
1 CGCCGCTAATGTTAAGGTATTTAGCGGCGTTTTTAT-CTAG
* * *
4844684 CGCCGCTAATGTT--GTGAATTTTA-CTGGCGTTTTTATGTTTG
1 CGCCGCTAATGTTAAG-GTA-TTTAGC-GGCGTTTTTAT-CTAG
* ** * * * *
4844725 CGCCGCTATTGGTTGGGGGTGA--TAGTGGCGTGTTTTGGTCAAT
1 CGCCGCTAAT-GTT-AAGGT-ATTTAGCGGCGT-TTTT-ATCTAG
* *
4844768 CGCCACTAATGTTAAGGTATTTAGCGGCGTTTCTATCCTAG
1 CGCCGCTAATGTTAAGGTATTTAGCGGCGTTTTTAT-CTAG
4844809 CGCCGCTA
1 CGCCGCTA
4844817 TTGGTTGGGG
Statistics
Matches: 183, Mismatches: 46, Indels: 58
0.64 0.16 0.20
Matches are distributed among these distances:
39 2 0.01
40 12 0.07
41 95 0.52
42 41 0.22
43 24 0.13
44 5 0.03
45 4 0.02
ACGTcount: A:0.17, C:0.18, G:0.28, T:0.37
Consensus pattern (40 bp):
CGCCGCTAATGTTAAGGTATTTAGCGGCGTTTTTATCTAG
Found at i:4844621 original size:125 final size:125
Alignment explanation
Indices: 4844474--4844816 Score: 625
Period size: 125 Copynumber: 2.7 Consensus size: 125
4844464 TTTTCTCTTA
* * *
4844474 GCGCCGCTATCT-GTTGGTGGTGATAGTGGCGTTTTTTGGTAAATCGCCACTAATGTTAAGGTAT
1 GCGCCGCTAT-TGGTTGGGGGTGATAGTGGCGTGTTTTGGTCAATCGCCACTAATGTTAAGGTAT
4844538 TTAGCGGCGTTTCTATCCTAGCGCCGCTAATGTTGTGAATTTTACTGGCGTTTTTATGTAT
65 TTAGCGGCGTTTCTATCCTAGCGCCGCTAATGTTGTGAATTTTACTGGCGTTTTTATGTAT
4844599 GCGCCGCTATTGGTTGGGGGTGATAGTGGCGTGTTTTGGTCAATCGCCACTAATGTTAAGGTATT
1 GCGCCGCTATTGGTTGGGGGTGATAGTGGCGTGTTTTGGTCAATCGCCACTAATGTTAAGGTATT
* *
4844664 TAGCGGTGTTTCTATCCTAGCGCCGCTAATGTTGTGAATTTTACTGGCGTTTTTATGTTT
66 TAGCGGCGTTTCTATCCTAGCGCCGCTAATGTTGTGAATTTTACTGGCGTTTTTATGTAT
4844724 GCGCCGCTATTGGTTGGGGGTGATAGTGGCGTGTTTTGGTCAATCGCCACTAATGTTAAGGTATT
1 GCGCCGCTATTGGTTGGGGGTGATAGTGGCGTGTTTTGGTCAATCGCCACTAATGTTAAGGTATT
4844789 TAGCGGCGTTTCTATCCTAGCGCCGCTA
66 TAGCGGCGTTTCTATCCTAGCGCCGCTA
4844817 TTGGTTGGGG
Statistics
Matches: 211, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
124 1 0.00
125 210 1.00
ACGTcount: A:0.17, C:0.17, G:0.29, T:0.37
Consensus pattern (125 bp):
GCGCCGCTATTGGTTGGGGGTGATAGTGGCGTGTTTTGGTCAATCGCCACTAATGTTAAGGTATT
TAGCGGCGTTTCTATCCTAGCGCCGCTAATGTTGTGAATTTTACTGGCGTTTTTATGTAT
Found at i:4844830 original size:84 final size:84
Alignment explanation
Indices: 4844724--4844879 Score: 312
Period size: 84 Copynumber: 1.9 Consensus size: 84
4844714 TTTTATGTTT
4844724 GCGCCGCTATTGGTTGGGGGTGATAGTGGCGTGTTTTGGTCAATCGCCACTAATGTTAAGGTATT
1 GCGCCGCTATTGGTTGGGGGTGATAGTGGCGTGTTTTGGTCAATCGCCACTAATGTTAAGGTATT
4844789 TAGCGGCGTTTCTATCCTA
66 TAGCGGCGTTTCTATCCTA
4844808 GCGCCGCTATTGGTTGGGGGTGATAGTGGCGTGTTTTGGTCAATCGCCACTAATGTTAAGGTATT
1 GCGCCGCTATTGGTTGGGGGTGATAGTGGCGTGTTTTGGTCAATCGCCACTAATGTTAAGGTATT
4844873 TAGCGGC
66 TAGCGGC
4844880 ATTTGGTTTT
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
84 72 1.00
ACGTcount: A:0.17, C:0.17, G:0.33, T:0.33
Consensus pattern (84 bp):
GCGCCGCTATTGGTTGGGGGTGATAGTGGCGTGTTTTGGTCAATCGCCACTAATGTTAAGGTATT
TAGCGGCGTTTCTATCCTA
Found at i:4845898 original size:13 final size:13
Alignment explanation
Indices: 4845880--4845904 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4845870 TACCGGGTAT
4845880 GGATTAAGGTTTG
1 GGATTAAGGTTTG
4845893 GGATTAAGGTTT
1 GGATTAAGGTTT
4845905 AGGGGTTGGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.36, T:0.40
Consensus pattern (13 bp):
GGATTAAGGTTTG
Found at i:4845964 original size:21 final size:20
Alignment explanation
Indices: 4845940--4846008 Score: 66
Period size: 21 Copynumber: 3.3 Consensus size: 20
4845930 TTAGGAGTTA
*
4845940 GGGGTTAATGATTTGGGATTT
1 GGGGTTAGTGATTTGGG-TTT
* * *
4845961 GGGGTTGGGGGTTTGGGGTTT
1 GGGGTTAGTGATTT-GGGTTT
*
4845982 GGGGTTTGTGATTTAGGGTTT
1 GGGGTTAGTGATTT-GGGTTT
4846003 GGGGTT
1 GGGGTT
4846009 CGGGATTAAG
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
21 36 0.92
22 3 0.08
ACGTcount: A:0.09, C:0.00, G:0.49, T:0.42
Consensus pattern (20 bp):
GGGGTTAGTGATTTGGGTTT
Found at i:4845988 original size:7 final size:7
Alignment explanation
Indices: 4845951--4846008 Score: 71
Period size: 7 Copynumber: 8.3 Consensus size: 7
4845941 GGGTTAATGA
*
4845951 TTTGGGA
1 TTTGGGG
4845958 TTTGGGG
1 TTTGGGG
*
4845965 TTGGGGG
1 TTTGGGG
4845972 TTTGGGG
1 TTTGGGG
4845979 TTTGGGG
1 TTTGGGG
* *
4845986 TTTGTGA
1 TTTGGGG
*
4845993 TTTAGGG
1 TTTGGGG
4846000 TTTGGGG
1 TTTGGGG
4846007 TT
1 TT
4846009 CGGGATTAAG
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
7 42 1.00
ACGTcount: A:0.05, C:0.00, G:0.50, T:0.45
Consensus pattern (7 bp):
TTTGGGG
Found at i:4846015 original size:21 final size:21
Alignment explanation
Indices: 4845949--4846029 Score: 76
Period size: 21 Copynumber: 3.9 Consensus size: 21
4845939 AGGGGTTAAT
*
4845949 GATTT-GGGATTTGGGGTTGGG
1 GATTTAGGG-TTTGGGGTTCGG
* * * *
4845970 GGTTTGGGGTTTGGGGTTTGT
1 GATTTAGGGTTTGGGGTTCGG
4845991 GATTTAGGGTTTGGGGTTCGG
1 GATTTAGGGTTTGGGGTTCGG
*
4846012 GA-TTAAGGTTTAGGGGTT
1 GATTTAGGGTTT-GGGGTT
4846030 AAGGACTTAA
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
20 8 0.16
21 39 0.78
22 3 0.06
ACGTcount: A:0.10, C:0.01, G:0.48, T:0.41
Consensus pattern (21 bp):
GATTTAGGGTTTGGGGTTCGG
Found at i:4846033 original size:14 final size:15
Alignment explanation
Indices: 4846014--4846063 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 15
4846004 GGGTTCGGGA
4846014 TTAAGG-TTTAGGGG
1 TTAAGGATTTAGGGG
* *
4846028 TTAAGGACTTAAGGG
1 TTAAGGATTTAGGGG
*
4846043 TT-AGGTATTTAGGGT
1 TTAAGG-ATTTAGGGG
4846058 TTAAGG
1 TTAAGG
4846064 TTTGGGATTT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
14 9 0.32
15 16 0.57
16 3 0.11
ACGTcount: A:0.26, C:0.02, G:0.36, T:0.36
Consensus pattern (15 bp):
TTAAGGATTTAGGGG
Found at i:4846596 original size:4 final size:4
Alignment explanation
Indices: 4846589--4846615 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
4846579 ATTAAAGATA
4846589 AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA
4846616 AGATGTGAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:4846932 original size:23 final size:23
Alignment explanation
Indices: 4846906--4846954 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
4846896 CACTTAGCCG
4846906 AAATTCCCCCCAAATTATCCCCA
1 AAATTCCCCCCAAATTATCCCCA
* *
4846929 AAATTCCCTCCAAATTTTCCCCA
1 AAATTCCCCCCAAATTATCCCCA
4846952 AAA
1 AAA
4846955 AATCCCCCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.37, C:0.39, G:0.00, T:0.24
Consensus pattern (23 bp):
AAATTCCCCCCAAATTATCCCCA
Found at i:4846964 original size:23 final size:22
Alignment explanation
Indices: 4846912--4846964 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 22
4846902 GCCGAAATTC
*
4846912 CCCCCAAATTATCCCCAAAATT
1 CCCCCAAATTATCCCCAAAAAT
*
4846934 CCCTCCAAATTTTCCCCAAAAAAT
1 CCC-CCAAATTATCCCC-AAAAAT
4846958 CCCCCAA
1 CCCCCAA
4846965 TTCTAGAACC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
22 3 0.11
23 16 0.59
24 8 0.30
ACGTcount: A:0.36, C:0.43, G:0.00, T:0.21
Consensus pattern (22 bp):
CCCCCAAATTATCCCCAAAAAT
Found at i:4847398 original size:12 final size:12
Alignment explanation
Indices: 4847383--4847422 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
4847373 TGTAATACTG
4847383 TTTGTTCATAAT
1 TTTGTTCATAAT
4847395 TTTGTT-ACTAAT
1 TTTGTTCA-TAAT
*
4847407 TTTGTTCATAAG
1 TTTGTTCATAAT
4847419 TTTG
1 TTTG
4847423 AAACAATCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
11 1 0.04
12 23 0.92
13 1 0.04
ACGTcount: A:0.23, C:0.07, G:0.12, T:0.57
Consensus pattern (12 bp):
TTTGTTCATAAT
Found at i:4848817 original size:43 final size:44
Alignment explanation
Indices: 4848617--4848950 Score: 196
Period size: 43 Copynumber: 7.8 Consensus size: 44
4848607 AGCTGCTCAA
* * * * * *
4848617 TTTAGCGGCGTTTGT-GGGAAAAGTGCCGCTGAAAGTTAATGC-A
1 TTTAGCGGCGTTTGTATGGTAAAGCGCCGCTAAAAGTCAA-GCTC
* * * * * *
4848660 TTTAGTGGCGTTTCTAT-GAAAAGCGTCGCTAAAAGTCCAGGTC
1 TTTAGCGGCGTTTGTATGGTAAAGCGCCGCTAAAAGTCAAGCTC
** * * * * *
4848703 TTTTAGCGGCGTTTGTA-AATCAAGCGCCG-TTATAGGCTAATG-TA
1 -TTTAGCGGCGTTTGTATGGTAAAGCGCCGCTAAAAGTC-AA-GCTC
*
4848747 TTT-GCGGCGTTTGTAGTGG--AAGTGCCGCTAAAAGTCAAGCTC
1 TTTAGCGGCGTTTGTA-TGGTAAAGCGCCGCTAAAAGTCAAGCTC
** *
4848789 TTTAGCGGCGTTT-TATGGTAAAGCGCCGCTAAATTTCAAGGTC
1 TTTAGCGGCGTTTGTATGGTAAAGCGCCGCTAAAAGTCAAGCTC
* ** * * *
4848832 TTTAGTGGCGTTTGTA-AATAAAGCGCCGCT-ATAGGCTAATG-TA
1 TTTAGCGGCGTTTGTATGGTAAAGCGCCGCTAAAAGTC-AA-GCTC
* * *
4848875 TTTTGCGGCGTTTGTAGTGG--AAGCACAGCTAAAAGTCAAGCTC
1 TTTAGCGGCGTTTGTA-TGGTAAAGCGCCGCTAAAAGTCAAGCTC
4848918 TTTAGCGGCGTTT-TATGGTAAAGCGCCGCTAAA
1 TTTAGCGGCGTTTGTATGGTAAAGCGCCGCTAAA
4848951 GATAATAACC
Statistics
Matches: 217, Mismatches: 52, Indels: 44
0.69 0.17 0.14
Matches are distributed among these distances:
41 7 0.03
42 33 0.15
43 146 0.67
44 30 0.14
45 1 0.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.31
Consensus pattern (44 bp):
TTTAGCGGCGTTTGTATGGTAAAGCGCCGCTAAAAGTCAAGCTC
Found at i:4848880 original size:129 final size:130
Alignment explanation
Indices: 4848616--4848950 Score: 448
Period size: 129 Copynumber: 2.6 Consensus size: 130
4848606 AAGCTGCTCA
* * * * *
4848616 ATTTAGCGGCGTTTGT-G-GGAAAAGTGCCGCTGAAAGTTAATGC-ATTTAGTGGCGTTTCTAT-
1 ATTTTGCGGCGTTTGTAGTGG--AAGTGCCGCTAAAAGTCAA-GCTCTTTAGCGGCGTTT-TATG
* * * * *
4848677 GAAAAGCGTCGCTAAAAGTCCAGGTCTTTTAGCGGCGTTTGTAAATCAAGCGCCGTTATAGGCTA
62 GTAAAGCGCCGCTAAAAGTCAAGGTCTTTTAGCGGCGTTTGTAAATAAAGCGCCGCTATAGGCTA
4848742 ATGT
127 ATGT
4848746 A-TTTGCGGCGTTTGTAGTGGAAGTGCCGCTAAAAGTCAAGCTCTTTAGCGGCGTTTTATGGTAA
1 ATTTTGCGGCGTTTGTAGTGGAAGTGCCGCTAAAAGTCAAGCTCTTTAGCGGCGTTTTATGGTAA
** *
4848810 AGCGCCGCTAAATTTCAAGGTC-TTTAGTGGCGTTTGTAAATAAAGCGCCGCTATAGGCTAATGT
66 AGCGCCGCTAAAAGTCAAGGTCTTTTAGCGGCGTTTGTAAATAAAGCGCCGCTATAGGCTAATGT
** *
4848874 ATTTTGCGGCGTTTGTAGTGGAAGCACAGCTAAAAGTCAAGCTCTTTAGCGGCGTTTTATGGTAA
1 ATTTTGCGGCGTTTGTAGTGGAAGTGCCGCTAAAAGTCAAGCTCTTTAGCGGCGTTTTATGGTAA
4848939 AGCGCCGCTAAA
66 AGCGCCGCTAAA
4848951 GATAATAACC
Statistics
Matches: 184, Mismatches: 16, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
128 45 0.24
129 135 0.73
130 2 0.01
131 2 0.01
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.30
Consensus pattern (130 bp):
ATTTTGCGGCGTTTGTAGTGGAAGTGCCGCTAAAAGTCAAGCTCTTTAGCGGCGTTTTATGGTAA
AGCGCCGCTAAAAGTCAAGGTCTTTTAGCGGCGTTTGTAAATAAAGCGCCGCTATAGGCTAATGT
Found at i:4848990 original size:43 final size:43
Alignment explanation
Indices: 4848961--4849101 Score: 212
Period size: 43 Copynumber: 3.3 Consensus size: 43
4848951 GATAATAACC
* * *
4848961 TTTAGTGGCGCTTAAGTCACAAACACCGCTAAAGAGCTTGACT
1 TTTAGCGGCGCTCAAGTCACAAACGCCGCTAAAGAGCTTGACT
*
4849004 TTTAGCGGCGCTCAAGTCACAAACGCCGTTAAAGAGCTTGACT
1 TTTAGCGGCGCTCAAGTCACAAACGCCGCTAAAGAGCTTGACT
* *
4849047 TTTAGCGGCGCTCAAGTCACAAACGCCGCTAAAG-GCCGTGACC
1 TTTAGCGGCGCTCAAGTCACAAACGCCGCTAAAGAG-CTTGACT
4849090 TTTAGCGGCGCT
1 TTTAGCGGCGCT
4849102 TGTCGCTATA
Statistics
Matches: 90, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
42 1 0.01
43 89 0.99
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.23
Consensus pattern (43 bp):
TTTAGCGGCGCTCAAGTCACAAACGCCGCTAAAGAGCTTGACT
Found at i:4848990 original size:129 final size:128
Alignment explanation
Indices: 4848704--4848991 Score: 357
Period size: 129 Copynumber: 2.2 Consensus size: 128
4848694 GTCCAGGTCT
* * * * * *
4848704 TTTAGCGGCGTTTGTAAATCAAGCGCCGTTATAGGCTAATGTATTTGCGGCGTTTGTAGTGGAAG
1 TTTAGTGGCGTCTGTAAATAAAACACCGCTATAGGCTAATGTATTTGCGGCGTTTGTAGTGGAAG
** * ** ***
4848769 TGCCGCTAAAAGTCAAGCTCTTTAGCGGCGTTTTATGGTAAAGCGCCGCTAAATTTCAAGGTC
66 CACAGCTAAAAGTCAAGCTCTTTAGCGGCGTTTTATGGTAAAGCGCCGCTAAAGATCAAAACC
* * *
4848832 TTTAGTGGCGTTTGTAAATAAAGCGCCGCTATAGGCTAATGTATTTTGCGGCGTTTGTAGTGGAA
1 TTTAGTGGCGTCTGTAAATAAAACACCGCTATAGGCTAATGTA-TTTGCGGCGTTTGTAGTGGAA
4848897 GCACAGCTAAAAGTCAAGCTCTTTAGCGGCGTTTTATGGTAAAGCGCCGCTAAAGAT-AATAACC
65 GCACAGCTAAAAGTCAAGCTCTTTAGCGGCGTTTTATGGTAAAGCGCCGCTAAAGATCAA-AACC
*
4848961 TTTAGTGGCG-CT-TAAGTCACAAACACCGCTA
1 TTTAGTGGCGTCTGTAAAT-A-AAACACCGCTA
4848992 AAGAGCTTGA
Statistics
Matches: 141, Mismatches: 15, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
127 4 0.03
128 44 0.31
129 93 0.66
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (128 bp):
TTTAGTGGCGTCTGTAAATAAAACACCGCTATAGGCTAATGTATTTGCGGCGTTTGTAGTGGAAG
CACAGCTAAAAGTCAAGCTCTTTAGCGGCGTTTTATGGTAAAGCGCCGCTAAAGATCAAAACC
Found at i:4849031 original size:86 final size:86
Alignment explanation
Indices: 4848941--4849101 Score: 207
Period size: 86 Copynumber: 1.9 Consensus size: 86
4848931 TATGGTAAAG
* * * * *
4848941 CGCCGCTAAAGATAATAACCTTTAGTGGCGCTTAAGTCACAAACACCGCTAAAGAG-CTTGACTT
1 CGCCGCTAAAGAGAATAACCTTTAGCGGCGCTCAAGTCACAAACACCGCTAAAG-GCCGTGACCT
4849005 TTAGCGGCGCTCAAGTCACAAA
65 TTAGCGGCGCTCAAGTCACAAA
* ** * * *
4849027 CGCCGTTAAAGAGCTTGACTTTTAGCGGCGCTCAAGTCACAAACGCCGCTAAAGGCCGTGACCTT
1 CGCCGCTAAAGAGAATAACCTTTAGCGGCGCTCAAGTCACAAACACCGCTAAAGGCCGTGACCTT
4849092 TAGCGGCGCT
66 TAGCGGCGCT
4849102 TGTCGCTATA
Statistics
Matches: 63, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
85 1 0.02
86 62 0.98
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.22
Consensus pattern (86 bp):
CGCCGCTAAAGAGAATAACCTTTAGCGGCGCTCAAGTCACAAACACCGCTAAAGGCCGTGACCTT
TAGCGGCGCTCAAGTCACAAA
Found at i:4850019 original size:140 final size:138
Alignment explanation
Indices: 4849836--4850363 Score: 618
Period size: 140 Copynumber: 3.9 Consensus size: 138
4849826 TATAACACAA
* * * *
4849836 GTCGGCATAGTGTTGGATAAAACCGGCTCTTATTTAAGCGTTGCCTTAGGCATGTATATCCCGAC
1 GTCGGCATAGTGTTGGACAAAACCGACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAAC
* * * *
4849901 CCTCATACAAAGAGTTGGCCAAAGCATATGTCGGCAAGTCTATCCCAACACTTAGGAAAGTTTTG
66 TCTTATACAAAGAGTTGGCCAAAGCATATATCGACAAGTCTATCCCAACACTTAGGAAA-TTTTG
4849966 CCCCAAAAGT
130 -CCCAAAAGT
* * * *
4849976 GTCGGCATAGTGTTGGACAAAGCCGATTCTTATTTAAGTGTTGCCTTAGGCATGCATATACCAAC
1 GTCGGCATAGTGTTGGACAAAACCGACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAAC
* * *
4850041 TCTTATACAAAGAGTTGGCCAAAACATAT-GCTGACAAGTCTACCCCAACACTT-----A----G
66 TCTTATACAAAGAGTTGGCCAAAGCATATATC-GACAAGTCTATCCCAACACTTAGGAAATTTTG
4850096 ---AAAAGT
130 CCCAAAAGT
* * *
4850102 GTCGGCATAGTGTTGAACAAAACCGACTCTTATTTAAGCGTTGTCTTAGGCATACATATCCCAAC
1 GTCGGCATAGTGTTGGACAAAACCGACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAAC
* ** *
4850167 TCTTATACAAAGGGTTGGCCAAAGTGTATATCGACAAGT-TATCCCAATACTTAGGAAATTGTTG
66 TCTTATACAAAGAGTTGGCCAAAGCATATATCGACAAGTCTATCCCAACACTTAGGAAATT-TT-
4850231 GCCCAAAAGT
129 GCCCAAAAGT
* * * * *
4850241 GTCGACATAGTGTTGGACAAAGCCGACTCTTATTTAAGCATTACCTTAGACATGCATATCCCAAC
1 GTCGGCATAGTGTTGGACAAAACCGACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAAC
* ** * *
4850306 TCTTATATAAA-AGTTGGCCAAAGTGTATATCGGCAAGTCTATCCCAGCACTTAGGAAA
66 TCTTATACAAAGAGTTGGCCAAAGCATATATCGACAAGTCTATCCCAACACTTAGGAAA
4850364 GCGTCGGCCC
Statistics
Matches: 330, Mismatches: 41, Indels: 35
0.81 0.10 0.09
Matches are distributed among these distances:
125 11 0.03
126 96 0.29
127 1 0.00
130 2 0.01
135 1 0.00
136 1 0.00
138 25 0.08
139 91 0.28
140 102 0.31
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (138 bp):
GTCGGCATAGTGTTGGACAAAACCGACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAAC
TCTTATACAAAGAGTTGGCCAAAGCATATATCGACAAGTCTATCCCAACACTTAGGAAATTTTGC
CCAAAAGT
Found at i:4850203 original size:126 final size:126
Alignment explanation
Indices: 4849970--4850371 Score: 443
Period size: 126 Copynumber: 3.1 Consensus size: 126
4849960 GTTTTGCCCC
* *
4849970 AAAAGTGTCGGCATAGTGTTGGACAAAGCCGATTCTTATTTAAGTGTTGCCTTAGGCATGCATAT
1 AAAAGTGTCGGCATAGTGTTGGACAAAGCCGACTCTTATTTAAGCGTTGCCTTAGGCATGCATAT
* ** *
4850035 ACCAACTCTTATACAAAGAGTTGGCCAAA--ACATATGCTGACAAGTCTACCCCAACACTTAG
66 CCCAACTCTTATACAAAGAGTTGGCCAAAGTGTATAT-C-GACAAGTCTATCCCAACACTTAG
* * * *
4850096 AAAAGTGTCGGCATAGTGTTGAACAAAACCGACTCTTATTTAAGCGTTGTCTTAGGCATACATAT
1 AAAAGTGTCGGCATAGTGTTGGACAAAGCCGACTCTTATTTAAGCGTTGCCTTAGGCATGCATAT
* *
4850161 CCCAACTCTTATACAAAGGGTTGGCCAAAGTGTATATCGACAAGT-TATCCCAATACTTAGGAAA
66 CCCAACTCTTATACAAAGAGTTGGCCAAAGTGTATATCGACAAGTCTATCCCAACACTT-----A
4850225 TTGTTGG
126 ------G
* * * *
4850232 CCCAAAAGTGTCGACATAGTGTTGGACAAAGCCGACTCTTATTTAAGCATTACCTTAGACATGCA
1 ---AAAAGTGTCGGCATAGTGTTGGACAAAGCCGACTCTTATTTAAGCGTTGCCTTAGGCATGCA
* * *
4850297 TATCCCAACTCTTATATAAA-AGTTGGCCAAAGTGTATATCGGCAAGTCTATCCCAGCACTTAG
63 TATCCCAACTCTTATACAAAGAGTTGGCCAAAGTGTATATCGACAAGTCTATCCCAACACTTAG
* *
4850360 GAAAGCGTCGGC
1 AAAAGTGTCGGC
4850372 CCAAGTCTAT
Statistics
Matches: 231, Mismatches: 28, Indels: 35
0.79 0.10 0.12
Matches are distributed among these distances:
125 20 0.09
126 93 0.40
127 1 0.00
128 5 0.02
130 1 0.00
134 1 0.00
136 1 0.00
138 25 0.11
139 84 0.36
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.27
Consensus pattern (126 bp):
AAAAGTGTCGGCATAGTGTTGGACAAAGCCGACTCTTATTTAAGCGTTGCCTTAGGCATGCATAT
CCCAACTCTTATACAAAGAGTTGGCCAAAGTGTATATCGACAAGTCTATCCCAACACTTAG
Found at i:4850310 original size:265 final size:265
Alignment explanation
Indices: 4849836--4850327 Score: 736
Period size: 265 Copynumber: 1.9 Consensus size: 265
4849826 TATAACACAA
* * * ** *
4849836 GTCGGCATAGTGTTGGATAAAACCGGCTCTTATTTAAGCGTTGCCTTAGGCATGTATATCCCGAC
1 GTCGGCATAGTGTTGAACAAAACCGACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAAC
* *
4849901 CCTCATACAAAGAGTTGGCCAAAGCATATGTCGGCAAGTCTATCCCAACACTTAGGAAAGTTTTG
66 CCTCATACAAAGAGTTGGCCAAAGCATATATCGACAAGTCTATCCCAACACTTAGGAAAGTTTTG
* * ** * *
4849966 CCCCAAAAGTGTCGGCATAGTGTTGGACAAAGCCGATTCTTATTTAAGTGTTGCCTTAGGCATGC
131 CCCCAAAAGTGTCGACATAGTGTTGGACAAAGCCGACTCTTATTTAAGCATTACCTTAGACATGC
4850031 ATATACCAACTCTTATACAAAGAGTTGGCCAAAACATATGCTGACAAGTCTACCCCAACACTTAG
196 ATATACCAACTCTTATACAAA-AGTTGGCCAAAACATATGCTGACAAGTCTACCCCAACACTTAG
4850096 AAAAGT
260 AAAAGT
*
4850102 GTCGGCATAGTGTTGAACAAAACCGACTCTTATTTAAGCGTTGTCTTAGGCATACATATCCCAAC
1 GTCGGCATAGTGTTGAACAAAACCGACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAAC
* * * ** *
4850167 TCTTATACAAAGGGTTGGCCAAAGTGTATATCGACAAGT-TATCCCAATACTTAGGAAA-TTGTT
66 CCTCATACAAAGAGTTGGCCAAAGCATATATCGACAAGTCTATCCCAACACTTAGGAAAGTT-TT
*
4850230 GGCCCAAAAGTGTCGACATAGTGTTGGACAAAGCCGACTCTTATTTAAGCATTACCTTAGACATG
130 GCCCCAAAAGTGTCGACATAGTGTTGGACAAAGCCGACTCTTATTTAAGCATTACCTTAGACATG
* *
4850295 CATATCCCAACTCTTATATAAAAGTTGGCCAAA
195 CATATACCAACTCTTATACAAAAGTTGGCCAAA
4850328 GTGTATATCG
Statistics
Matches: 201, Mismatches: 24, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
264 13 0.06
265 98 0.49
266 90 0.45
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (265 bp):
GTCGGCATAGTGTTGAACAAAACCGACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAAC
CCTCATACAAAGAGTTGGCCAAAGCATATATCGACAAGTCTATCCCAACACTTAGGAAAGTTTTG
CCCCAAAAGTGTCGACATAGTGTTGGACAAAGCCGACTCTTATTTAAGCATTACCTTAGACATGC
ATATACCAACTCTTATACAAAAGTTGGCCAAAACATATGCTGACAAGTCTACCCCAACACTTAGA
AAAGT
Found at i:4850349 original size:139 final size:139
Alignment explanation
Indices: 4850096--4850363 Score: 403
Period size: 139 Copynumber: 1.9 Consensus size: 139
4850086 CAACACTTAG
* * ** *
4850096 AAAAGTGTCGGCATAGTGTTGAACAAAACCGACTCTTATTTAAGCGTTGTCTTAGGCATACATAT
1 AAAAGTGTCGACATAGTGTTGAACAAAACCGACTCTTATTTAAGCATTACCTTAGACATACATAT
* *
4850161 CCCAACTCTTATACAAAGGGTTGGCCAAAGTGTATATCGACAAGTTATCCCAATACTTAGGAAAT
66 CCCAACTCTTATACAAAGAGTTGGCCAAAGTGTATATCGACAAGTTATCCCAACACTTAGGAAAT
4850226 TGTTGGCCC
131 TGTTGGCCC
* * *
4850235 AAAAGTGTCGACATAGTGTTGGACAAAGCCGACTCTTATTTAAGCATTACCTTAGACATGCATAT
1 AAAAGTGTCGACATAGTGTTGAACAAAACCGACTCTTATTTAAGCATTACCTTAGACATACATAT
* * *
4850300 CCCAACTCTTATATAAA-AGTTGGCCAAAGTGTATATCGGCAAGTCTATCCCAGCACTTAGGAAA
66 CCCAACTCTTATACAAAGAGTTGGCCAAAGTGTATATCGACAAGT-TATCCCAACACTTAGGAAA
4850364 GCGTCGGCCC
Statistics
Matches: 115, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
138 25 0.22
139 90 0.78
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.28
Consensus pattern (139 bp):
AAAAGTGTCGACATAGTGTTGAACAAAACCGACTCTTATTTAAGCATTACCTTAGACATACATAT
CCCAACTCTTATACAAAGAGTTGGCCAAAGTGTATATCGACAAGTTATCCCAACACTTAGGAAAT
TGTTGGCCC
Found at i:4852261 original size:5 final size:5
Alignment explanation
Indices: 4852248--4852278 Score: 53
Period size: 5 Copynumber: 6.0 Consensus size: 5
4852238 AAAATAAAAC
4852248 AAATGG AAATG AAATG AAATG AAATG AAATG
1 AAAT-G AAATG AAATG AAATG AAATG AAATG
4852279 CCTATGTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 21 0.84
6 4 0.16
ACGTcount: A:0.58, C:0.00, G:0.23, T:0.19
Consensus pattern (5 bp):
AAATG
Found at i:4853087 original size:11 final size:11
Alignment explanation
Indices: 4853073--4853169 Score: 61
Period size: 11 Copynumber: 9.4 Consensus size: 11
4853063 AAAAATTAAA
4853073 AAAAATATTTT
1 AAAAATATTTT
4853084 AAAAATATTTT
1 AAAAATATTTT
4853095 --AAA-A--TT
1 AAAAATATTTT
4853101 AAAAATGTATTTT
1 AAAAA--TATTTT
4853114 AAAAATATTTT
1 AAAAATATTTT
4853125 --AAA-A--TT
1 AAAAATATTTT
* *
4853131 AAAAAAATTTAA
1 AAAAATATTT-T
4853143 AAAAAGTATTTT
1 AAAAA-TATTTT
*
4853155 AAAAGTATTTT
1 AAAAATATTTT
4853166 AAAA
1 AAAA
4853170 TTAAAAAATA
Statistics
Matches: 68, Mismatches: 4, Indels: 28
0.68 0.04 0.28
Matches are distributed among these distances:
6 4 0.06
8 8 0.12
9 7 0.10
11 29 0.43
12 9 0.13
13 11 0.16
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:4853145 original size:17 final size:17
Alignment explanation
Indices: 4853112--4853145 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
4853102 AAAATGTATT
* *
4853112 TTAAAAATATTTTAAAA
1 TTAAAAAAATTTAAAAA
4853129 TTAAAAAAATTTAAAAA
1 TTAAAAAAATTTAAAAA
4853146 AAGTATTTTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (17 bp):
TTAAAAAAATTTAAAAA
Found at i:4853874 original size:140 final size:140
Alignment explanation
Indices: 4853688--4854370 Score: 826
Period size: 140 Copynumber: 5.0 Consensus size: 140
4853678 ACACAAGTCG
* * * * * *
4853688 GCATAGTGTTGGATAAAACCGACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCTCGACCCTC
1 GCATAGTGTTGGACAAAGCCGACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAACTCTT
** * * * *
4853753 ATACAAAGAGTTGGCCAAAGCATATGTCGGCAAGTCTATCCCAACACTTAGGAAAGTTTTGCCCC
66 ATACAAAGAGTTGGCCAAAGTGTATATCGACAAGTCTATCCCAACACTTAGGAAAGTGTCGCCCC
4853818 AAAAGTGTCA
131 AAAAGTGTCA
* * *
4853828 GCATAGTGTTGGACAAAGCCGATTCTTATTTAAGTGTTGCCTTAGGCATGCATATACCAACTCTT
1 GCATAGTGTTGGACAAAGCCGACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAACTCTT
** *
4853893 ATACAAAGAGTTGGCCAAA--ACATATGCTGACAAGTCTACCCCAACACTT-----A-----G--
66 ATACAAAGAGTTGGCCAAAGTGTATAT-C-GACAAGTCTATCCCAACACTTAGGAAAGTGTCGCC
*
4853944 --AAAAGTGTCG
129 CCAAAAGTGTCA
* * * **
4853954 GCATAGTGTTGAACAAAACCGACTCTTATTTAAGCGTTGTCTTAGGCATATATATCCCAACTCTT
1 GCATAGTGTTGGACAAAGCCGACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAACTCTT
* * *
4854019 ATACAAAGGGTTGGCCAAAGTGTATATCGACAAGTCTATCCCAATACTTAGGAAAGTGTCGGCCC
66 ATACAAAGAGTTGGCCAAAGTGTATATCGACAAGTCTATCCCAACACTTAGGAAAGTGTCGCCCC
*
4854084 AAAAGTGTCG
131 AAAAGTGTCA
*
4854094 GCATAGTGTTGGACAAAGCCGACTCTTATTTAAGCATTGCCTTAGGCATGCATATCCCAACTCTT
1 GCATAGTGTTGGACAAAGCCGACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAACTCTT
* * * *
4854159 ATATAAA-AGTTGGCCAAAGTGTATATCGGCAAGTCTATCCCAGCACTTAGGAAAGCT-TCGGCC
66 ATACAAAGAGTTGGCCAAAGTGTATATCGACAAGTCTATCCCAACACTTAGGAAAG-TGTCGCCC
4854222 CAAAAGTGTCA
130 CAAAAGTGTCA
* * * *
4854233 ACATAGTGTTGGACAAAGGCAACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACTCTT
1 GCATAGTGTTGGACAAAGCCGACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAACTCTT
* * * ** *
4854298 ATACAAAGAGTTGGCCAAAATGTATTTCGACAAATCTATCCCAACACTTAAAAAAATGTCGCCCC
66 ATACAAAGAGTTGGCCAAAGTGTATATCGACAAGTCTATCCCAACACTTAGGAAAGTGTCGCCCC
4854363 AAAAGTGT
131 AAAAGTGT
4854371 TGCAGTAAGC
Statistics
Matches: 468, Mismatches: 54, Indels: 42
0.83 0.10 0.07
Matches are distributed among these distances:
126 103 0.22
127 1 0.00
128 4 0.01
130 1 0.00
131 1 0.00
135 1 0.00
136 1 0.00
138 4 0.01
139 128 0.27
140 224 0.48
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.27
Consensus pattern (140 bp):
GCATAGTGTTGGACAAAGCCGACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAACTCTT
ATACAAAGAGTTGGCCAAAGTGTATATCGACAAGTCTATCCCAACACTTAGGAAAGTGTCGCCCC
AAAAGTGTCA
Found at i:4854158 original size:266 final size:272
Alignment explanation
Indices: 4853684--4854370 Score: 861
Period size: 266 Copynumber: 2.5 Consensus size: 272
4853674 TATAACACAA
* * * *
4853684 GTCGGCATAGTGTTGGATAAAACCGACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCTCGAC
1 GTCGGCATAGTGTTGGACAAAACCGACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAAC
* * ** * * * *
4853749 CCTCATACAAAGAGTTGGCCAAAGCATATGTCGGCAAGTCTATCCCAACACTTAGGAAAGTTTTG
66 TCTTATACAAAGAGTTGGCCAAAGTGTATATCGACAAGTCTATCCCAACACTTAGGAAAGTGTCG
* **
4853814 CCCCAAAAGTGTCAGCATAGTGTTGGACAAAGCCGATTCTTATTTAAGTGTTGCCTTAGGCATGC
131 CCCCAAAAGTGTCAGCATAGTGTTGGACAAAGCCGACTCTTATTTAAGCATTGCCTTAGGCATGC
*
4853879 ATATACCAACTCTTATACAAAGAGTTGGCCAAA-ACATATGCTGACAAGTCTA-CC-C-C-A-AC
196 ATATACCAACTCTTATACAAA-AGTTGGCCAAAGACATAT-C-GACAAGTCTACCCACACTAGAA
4853938 A-CTT-AG-AAAAGT
258 AGCTTCAGCAAAAGT
* * *
4853950 GTCGGCATAGTGTTGAACAAAACCGACTCTTATTTAAGCGTTGTCTTAGGCATATATATCCCAAC
1 GTCGGCATAGTGTTGGACAAAACCGACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAAC
* *
4854015 TCTTATACAAAGGGTTGGCCAAAGTGTATATCGACAAGTCTATCCCAATACTTAGGAAAGTGTCG
66 TCTTATACAAAGAGTTGGCCAAAGTGTATATCGACAAGTCTATCCCAACACTTAGGAAAGTGTCG
* *
4854080 GCCCAAAAGTGTCGGCATAGTGTTGGACAAAGCCGACTCTTATTTAAGCATTGCCTTAGGCATGC
131 CCCCAAAAGTGTCAGCATAGTGTTGGACAAAGCCGACTCTTATTTAAGCATTGCCTTAGGCATGC
* * ** *
4854145 ATATCCCAACTCTTATATAAAAGTTGGCCAAAGTGTATATCGGCAAGTCTATCCCAGCACTTAGG
196 ATATACCAACTCTTATACAAAAGTTGGCCAAAG-ACATATCGACAAGTCTA-CCCA-CAC-TA-G
*
4854210 AAAGCTTCGGCCCAAAAGT
256 AAAGCTTCAG--CAAAAGT
** ** *
4854229 GTCAACATAGTGTTGGACAAAGGCAACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAAC
1 GTCGGCATAGTGTTGGACAAAACCGACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAAC
* * * ** *
4854294 TCTTATACAAAGAGTTGGCCAAAATGTATTTCGACAAATCTATCCCAACACTTAAAAAAATGTCG
66 TCTTATACAAAGAGTTGGCCAAAGTGTATATCGACAAGTCTATCCCAACACTTAGGAAAGTGTCG
4854359 CCCCAAAAGTGT
131 CCCCAAAAGTGT
4854371 TGCAGTAAGC
Statistics
Matches: 359, Mismatches: 46, Indels: 19
0.85 0.11 0.04
Matches are distributed among these distances:
265 20 0.06
266 193 0.54
267 6 0.02
269 1 0.00
270 1 0.00
272 1 0.00
274 2 0.01
275 3 0.01
276 1 0.00
279 131 0.36
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.27
Consensus pattern (272 bp):
GTCGGCATAGTGTTGGACAAAACCGACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAAC
TCTTATACAAAGAGTTGGCCAAAGTGTATATCGACAAGTCTATCCCAACACTTAGGAAAGTGTCG
CCCCAAAAGTGTCAGCATAGTGTTGGACAAAGCCGACTCTTATTTAAGCATTGCCTTAGGCATGC
ATATACCAACTCTTATACAAAAGTTGGCCAAAGACATATCGACAAGTCTACCCACACTAGAAAGC
TTCAGCAAAAGT
Found at i:4859037 original size:5 final size:5
Alignment explanation
Indices: 4859023--4859061 Score: 71
Period size: 5 Copynumber: 8.0 Consensus size: 5
4859013 TATGTTTAAG
4859023 TAAT- TAATA TAATA TAATA TAATA TAATA TAATA TAATA
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
4859062 CAGGGTAAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 4 0.12
5 30 0.88
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
TAATA
Found at i:4861782 original size:15 final size:12
Alignment explanation
Indices: 4861757--4861801 Score: 54
Period size: 15 Copynumber: 3.4 Consensus size: 12
4861747 TATAATATAT
4861757 ATATATATATAAA
1 ATATAT-TATAAA
4861770 ATACCTATGTATAAA
1 ATA--TAT-TATAAA
4861785 ATATATTATAAA
1 ATATATTATAAA
4861797 ATATA
1 ATATA
4861802 AAGAATATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
12 11 0.38
13 6 0.21
15 12 0.41
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.38
Consensus pattern (12 bp):
ATATATTATAAA
Found at i:4862170 original size:3 final size:3
Alignment explanation
Indices: 4862156--4862200 Score: 72
Period size: 3 Copynumber: 14.7 Consensus size: 3
4862146 TGATAATATT
*
4862156 TAA TAG TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TA
4862201 GCACACATTA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
3 36 0.92
4 3 0.08
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:4862958 original size:16 final size:17
Alignment explanation
Indices: 4862932--4862963 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
4862922 CAAGTAAGGA
4862932 TTTTCCTTTTCTTTTTG
1 TTTTCCTTTTCTTTTTG
4862949 TTTT-CTTTTCTTTTT
1 TTTTCCTTTTCTTTTT
4862964 AGTATGAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.00, C:0.16, G:0.03, T:0.81
Consensus pattern (17 bp):
TTTTCCTTTTCTTTTTG
Found at i:4867232 original size:21 final size:21
Alignment explanation
Indices: 4867206--4867246 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
4867196 AGACGAGCAA
* *
4867206 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
4867227 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
4867247 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:4874170 original size:11 final size:11
Alignment explanation
Indices: 4874151--4874183 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
4874141 GCCATTACTC
*
4874151 TCATAACAATT
1 TCATTACAATT
4874162 TCATTACAATT
1 TCATTACAATT
4874173 TCATTACAATT
1 TCATTACAATT
4874184 AGCTCTTTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.39, C:0.18, G:0.00, T:0.42
Consensus pattern (11 bp):
TCATTACAATT
Found at i:4889762 original size:23 final size:21
Alignment explanation
Indices: 4889731--4889786 Score: 85
Period size: 23 Copynumber: 2.5 Consensus size: 21
4889721 ATATTTCTTA
4889731 TTTTTTTTAATATTAATATAAT
1 TTTTTTTTAATATTAATAT-AT
4889753 TATTTTTTTAATATTAATATAT
1 T-TTTTTTTAATATTAATATAT
4889775 TTTTTATTTAAT
1 TTTTT-TTTAAT
4889787 TAGATTTTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
21 4 0.12
22 10 0.31
23 18 0.56
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (21 bp):
TTTTTTTTAATATTAATATAT
Found at i:4889788 original size:20 final size:20
Alignment explanation
Indices: 4889729--4889788 Score: 68
Period size: 22 Copynumber: 2.9 Consensus size: 20
4889719 GAATATTTCT
*
4889729 TATTTTTTTTAATATTAATA
1 TATTTTTTTTTATATTAATA
4889749 TAATTATTTTTTTAATATTAATA
1 T-ATT-TTTTTTT-ATATTAATA
4889772 TATTTTTTATTTA-ATTA
1 TATTTTTT-TTTATATTA
4889789 GATTTTAATG
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
20 5 0.14
21 8 0.23
22 12 0.34
23 10 0.29
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (20 bp):
TATTTTTTTTTATATTAATA
Found at i:4892674 original size:12 final size:12
Alignment explanation
Indices: 4892654--4892684 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
4892644 GGAAAACAGG
4892654 AAAGAAGATGAA
1 AAAGAAGATGAA
*
4892666 AAAGGAGATGAA
1 AAAGAAGATGAA
4892678 AAAGAAG
1 AAAGAAG
4892685 CGAAAAGATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.65, C:0.00, G:0.29, T:0.06
Consensus pattern (12 bp):
AAAGAAGATGAA
Found at i:4907120 original size:21 final size:21
Alignment explanation
Indices: 4907094--4907147 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
4907084 CAATAGTGGT
*
4907094 GGTGAGATTAGTTACTCTAGC
1 GGTGAGATTAGATACTCTAGC
*
4907115 GGTGAGATTAGATACTGTAGC
1 GGTGAGATTAGATACTCTAGC
*
4907136 AGTGAGATTAGA
1 GGTGAGATTAGA
4907148 AATATGATGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.30, C:0.09, G:0.31, T:0.30
Consensus pattern (21 bp):
GGTGAGATTAGATACTCTAGC
Found at i:4909122 original size:15 final size:16
Alignment explanation
Indices: 4909102--4909135 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
4909092 AAAAGCATAG
4909102 CATAAAAA-TATCAAA
1 CATAAAAAGTATCAAA
*
4909117 CATAAAAAGTATCATA
1 CATAAAAAGTATCAAA
4909133 CAT
1 CAT
4909136 TAGTTTTACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.59, C:0.15, G:0.03, T:0.24
Consensus pattern (16 bp):
CATAAAAAGTATCAAA
Found at i:4912561 original size:21 final size:21
Alignment explanation
Indices: 4912535--4912590 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 21
4912525 AACAACGGTG
*
4912535 GCGGTGAGATTAGTTAATGCA
1 GCGGTGAGATTAGATAATGCA
* * *
4912556 GCGGTGAGATTGGATACTGTA
1 GCGGTGAGATTAGATAATGCA
*
4912577 GCAGTGAGATTAGA
1 GCGGTGAGATTAGA
4912591 AACATTATGG
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.29, C:0.09, G:0.36, T:0.27
Consensus pattern (21 bp):
GCGGTGAGATTAGATAATGCA
Found at i:4915668 original size:18 final size:19
Alignment explanation
Indices: 4915642--4915688 Score: 62
Period size: 18 Copynumber: 2.6 Consensus size: 19
4915632 TTTGCAACCC
4915642 AAGGAGAAGGGG-AAGGGG
1 AAGGAGAAGGGGAAAGGGG
*
4915660 AAGGGGAAGGGGAAAGGGG
1 AAGGAGAAGGGGAAAGGGG
*
4915679 -AGAAGAAGGG
1 AAGGAGAAGGG
4915689 TAACCAAACA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 19 0.76
19 6 0.24
ACGTcount: A:0.40, C:0.00, G:0.60, T:0.00
Consensus pattern (19 bp):
AAGGAGAAGGGGAAAGGGG
Found at i:4915678 original size:7 final size:6
Alignment explanation
Indices: 4915642--4915679 Score: 58
Period size: 6 Copynumber: 6.2 Consensus size: 6
4915632 TTTGCAACCC
*
4915642 AAGGAG AAGGGG AAGGGG AAGGGG AAGGGG AAAGGGG A
1 AAGGGG AAGGGG AAGGGG AAGGGG AAGGGG -AAGGGG A
4915680 GAAGAAGGGT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
6 24 0.80
7 6 0.20
ACGTcount: A:0.39, C:0.00, G:0.61, T:0.00
Consensus pattern (6 bp):
AAGGGG
Found at i:4922308 original size:19 final size:21
Alignment explanation
Indices: 4922276--4922315 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
4922266 TTATTATCAA
*
4922276 TAAAAAAGAGAGAAAATTCTC
1 TAAAAAAGAGAGAAAAATCTC
4922297 TAAAAAA-A-AGAAAAATCTC
1 TAAAAAAGAGAGAAAAATCTC
4922316 AATAATTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 10 0.56
20 1 0.06
21 7 0.39
ACGTcount: A:0.62, C:0.10, G:0.10, T:0.17
Consensus pattern (21 bp):
TAAAAAAGAGAGAAAAATCTC
Found at i:4931358 original size:55 final size:57
Alignment explanation
Indices: 4931244--4931376 Score: 164
Period size: 59 Copynumber: 2.3 Consensus size: 57
4931234 ATATTTTTTG
4931244 TATATTTATTTATTTATTATTCTTCACTTTCTAAATACCTTAATATTATTTATAATATT
1 TATATTTATTTATTTATTATTCTTCACTTTCTAAATACCTTAATATTA--TATAATATT
* * *
4931303 TATATTTATTTATTTATTATTCTTTACTTTTTAAATACC-TAA-ATCTA-ATATTATT
1 TATATTTATTTATTTATTATTCTTCACTTTCTAAATACCTTAATAT-TATATAATATT
* *
4931358 TATATCTGTTGTATTTATT
1 TATATTTATT-TATTTATT
4931377 TATTTGTTCA
Statistics
Matches: 67, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
55 15 0.22
56 8 0.12
57 2 0.03
58 5 0.07
59 37 0.55
ACGTcount: A:0.31, C:0.09, G:0.02, T:0.59
Consensus pattern (57 bp):
TATATTTATTTATTTATTATTCTTCACTTTCTAAATACCTTAATATTATATAATATT
Found at i:4931447 original size:69 final size:68
Alignment explanation
Indices: 4931306--4931453 Score: 161
Period size: 69 Copynumber: 2.2 Consensus size: 68
4931296 TAATATTTAT
* * * *
4931306 ATTTATTTATTTATTATTCTTTACTTTTTAAATACCTAAATCTAATATTATTTATATCTGTTGTA
1 ATTTATTTATTCATTATTCTTTACCTTTTAAACACCTAAATCTAATATTACTTATATCTGTTGTA
**
4931371 TTT
66 TCG
* * ** * * * *
4931374 ATTTATTTGTTCATTATTCTTTTACCTTTTAGACATTTAAATTTAATATTACTTATGTTTGTTTT
1 ATTTATTTATTCATTATTC-TTTACCTTTTAAACACCTAAATCTAATATTACTTATATCTGTTGT
4931439 ATCG
65 ATCG
4931443 ATTTATTTATT
1 ATTTATTTATT
4931454 TATTTATTTA
Statistics
Matches: 64, Mismatches: 15, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
68 17 0.27
69 47 0.73
ACGTcount: A:0.27, C:0.09, G:0.05, T:0.59
Consensus pattern (68 bp):
ATTTATTTATTCATTATTCTTTACCTTTTAAACACCTAAATCTAATATTACTTATATCTGTTGTA
TCG
Found at i:4931451 original size:77 final size:77
Alignment explanation
Indices: 4931369--4931538 Score: 200
Period size: 77 Copynumber: 2.2 Consensus size: 77
4931359 ATATCTGTTG
* * * * * **
4931369 TATTTATTTATTTGTTCATTATTC-TTTTACCTTTTAGACATTTAAATTTAATATTACT-TATGT
1 TATTTATTTATTTATTCATCATTCTTTTTA-CTTCTAAACACTTAAATTTAATATTA-TGTACAT
4931432 TTGTTTTATCGATT
64 TTGTTTTATCGATT
* *
4931446 TATTTATTTATTTATTTATCATTCTTTTTACTTCTAAATACTTAAATTTAATATTATGTACATTT
1 TATTTATTTATTTATTCATCATTCTTTTTACTTCTAAACACTTAAATTTAATATTATGTACATTT
**
4931511 GTTTTATTTATT
66 GTTTTATCGATT
*
4931523 TACTTATTTATTTATT
1 TATTTATTTATTTATT
4931539 TATTTTTTTT
Statistics
Matches: 79, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
76 1 0.01
77 73 0.92
78 5 0.06
ACGTcount: A:0.26, C:0.08, G:0.04, T:0.61
Consensus pattern (77 bp):
TATTTATTTATTTATTCATCATTCTTTTTACTTCTAAACACTTAAATTTAATATTATGTACATTT
GTTTTATCGATT
Found at i:4931522 original size:4 final size:4
Alignment explanation
Indices: 4931513--4931543 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
4931503 GTACATTTGT
*
4931513 TTTA TTTA TTTA CTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
4931544 TTTTTTCTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:4934255 original size:28 final size:30
Alignment explanation
Indices: 4934224--4934279 Score: 80
Period size: 28 Copynumber: 1.9 Consensus size: 30
4934214 CACAAATTTG
*
4934224 GAATTTAATC-ATGTACTTT-TATTTTTAC
1 GAATTTAATCTATCTACTTTCTATTTTTAC
*
4934252 GAATTTAGTCTATCTACTTTCTATTTTT
1 GAATTTAATCTATCTACTTTCTATTTTT
4934280 TGAAATCTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 9 0.38
29 8 0.33
30 7 0.29
ACGTcount: A:0.25, C:0.12, G:0.07, T:0.55
Consensus pattern (30 bp):
GAATTTAATCTATCTACTTTCTATTTTTAC
Found at i:4937234 original size:27 final size:28
Alignment explanation
Indices: 4937167--4937236 Score: 81
Period size: 27 Copynumber: 2.5 Consensus size: 28
4937157 CAAGTGTTTC
*
4937167 AATTTCATACAATGTCATCAATCTCAATCT
1 AATTT-ATAC-ATATCATCAATCTCAATCT
*
4937197 AATTTATACATATCATCAATCT-ATTACT
1 AATTTATACATATCATCAATCTCAAT-CT
4937225 -ATTTATACATAT
1 AATTTATACATAT
4937237 ATCTCCATAT
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
27 14 0.38
28 14 0.38
29 4 0.11
30 5 0.14
ACGTcount: A:0.39, C:0.19, G:0.01, T:0.41
Consensus pattern (28 bp):
AATTTATACATATCATCAATCTCAATCT
Found at i:4937747 original size:26 final size:22
Alignment explanation
Indices: 4937694--4937754 Score: 68
Period size: 23 Copynumber: 2.5 Consensus size: 22
4937684 ATCATCAATT
4937694 AATATACATATATATAAATATTC
1 AATAT-CATATATATAAATATTC
*
4937717 AATATCATATAGTATAATTCATATC
1 AATATCATATA-TATAAAT-AT-TC
4937742 ACATATCATATAT
1 A-ATATCATATAT
4937755 TAATAATGTC
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
22 6 0.18
23 11 0.33
24 2 0.06
25 4 0.12
26 10 0.30
ACGTcount: A:0.48, C:0.11, G:0.02, T:0.39
Consensus pattern (22 bp):
AATATCATATATATAAATATTC
Found at i:4941863 original size:41 final size:42
Alignment explanation
Indices: 4941785--4941868 Score: 102
Period size: 41 Copynumber: 2.0 Consensus size: 42
4941775 TAAAAAATAT
* * *
4941785 TTATATTAAAAAATACTACCATAAATTTAATAAATGTT-TTG
1 TTATATTAAAAAACACTACAATAAATATAATAAATGTTATTG
4941826 TTATATTAAAAAACAC-A-AATAAATATAATAAATATGTTATTG
1 TTATATTAAAAAACACTACAATAAATATAAT-AA-ATGTTATTG
4941868 T
1 T
4941869 ATTAAATATA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
39 10 0.27
40 3 0.08
41 20 0.54
42 4 0.11
ACGTcount: A:0.50, C:0.06, G:0.05, T:0.39
Consensus pattern (42 bp):
TTATATTAAAAAACACTACAATAAATATAATAAATGTTATTG
Found at i:4942020 original size:31 final size:31
Alignment explanation
Indices: 4941983--4942051 Score: 81
Period size: 31 Copynumber: 2.2 Consensus size: 31
4941973 ATTTAATATA
4941983 AATATAA-AATATATATAATTATTATT-TAACAT
1 AATATAATAATATA-AT-ATTATT-TTATAACAT
4942015 -ATATAATTAATATAATATTATTTTATAACAT
1 AATATAA-TAATATAATATTATTTTATAACAT
4942046 AATATA
1 AATATA
4942052 TTTGGGCTGG
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
30 2 0.06
31 18 0.55
32 7 0.21
33 6 0.18
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (31 bp):
AATATAATAATATAATATTATTTTATAACAT
Found at i:4945625 original size:18 final size:18
Alignment explanation
Indices: 4945602--4945636 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
4945592 GTAAAGGATC
*
4945602 AGGATCAGCGTCAGCCAA
1 AGGATCAGCATCAGCCAA
4945620 AGGATCAGCATCAGCCA
1 AGGATCAGCATCAGCCA
4945637 CACCTAAGCG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.29, G:0.26, T:0.11
Consensus pattern (18 bp):
AGGATCAGCATCAGCCAA
Found at i:4947173 original size:10 final size:9
Alignment explanation
Indices: 4947099--4947204 Score: 67
Period size: 9 Copynumber: 11.9 Consensus size: 9
4947089 AATAACATTC
4947099 AAAAATTTA
1 AAAAATTTA
*
4947108 AAATATTTA
1 AAAAATTTA
* *
4947117 TAAAATTTT
1 AAAAATTTA
*
4947126 CAAAATTT-
1 AAAAATTTA
* *
4947134 -ATATTTTA
1 AAAAATTTA
4947142 AAAAATTATA
1 AAAAATT-TA
*
4947152 ATAAATTT-
1 AAAAATTTA
4947160 AAAAATTGTA
1 AAAAATT-TA
*
4947170 AAAAATATA
1 AAAAATTTA
*
4947179 AAAAAGGTT-
1 AAAAA-TTTA
*
4947188 AAAATTTTA
1 AAAAATTTA
4947197 AAAAATTT
1 AAAAATTT
4947205 CTAAAATAAT
Statistics
Matches: 73, Mismatches: 17, Indels: 14
0.70 0.16 0.13
Matches are distributed among these distances:
7 5 0.07
8 8 0.11
9 45 0.62
10 15 0.21
ACGTcount: A:0.58, C:0.01, G:0.03, T:0.39
Consensus pattern (9 bp):
AAAAATTTA
Found at i:4947210 original size:10 final size:10
Alignment explanation
Indices: 4947136--4947210 Score: 52
Period size: 10 Copynumber: 7.9 Consensus size: 10
4947126 CAAAATTTAT
4947136 ATTTTAAAAA
1 ATTTTAAAAA
* *
4947146 ATTATAATAA
1 ATTTTAAAAA
4947156 A-TTT-AAAA
1 ATTTTAAAAA
*
4947164 ATTGTAAAAA
1 ATTTTAAAAA
*
4947174 A-TATAAAAA
1 ATTTTAAAAA
**
4947183 AGGTT--AAA
1 ATTTTAAAAA
4947191 ATTTTAAAAA
1 ATTTTAAAAA
4947201 ATTTCTAAAA
1 ATTT-TAAAA
4947211 TAATAATTTT
Statistics
Matches: 49, Mismatches: 10, Indels: 11
0.70 0.14 0.16
Matches are distributed among these distances:
8 10 0.20
9 12 0.24
10 22 0.45
11 5 0.10
ACGTcount: A:0.60, C:0.01, G:0.04, T:0.35
Consensus pattern (10 bp):
ATTTTAAAAA
Found at i:4947719 original size:15 final size:17
Alignment explanation
Indices: 4947690--4947722 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
4947680 TTTTTAATTC
4947690 TATGTTTATTAATTTTA
1 TATGTTTATTAATTTTA
4947707 TATGTTT-TT-ATTTTA
1 TATGTTTATTAATTTTA
4947722 T
1 T
4947723 TAAAATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 2 0.12
17 7 0.44
ACGTcount: A:0.24, C:0.00, G:0.06, T:0.70
Consensus pattern (17 bp):
TATGTTTATTAATTTTA
Found at i:4954423 original size:31 final size:32
Alignment explanation
Indices: 4954374--4954433 Score: 95
Period size: 31 Copynumber: 1.9 Consensus size: 32
4954364 GGGGGCTGAA
4954374 AACTTAAATAAAAAACTTTCGAATAGTTCTGT
1 AACTTAAATAAAAAACTTTCGAATAGTTCTGT
* *
4954406 AACTTAAAT-GAAAACTTTTGAATAGTTC
1 AACTTAAATAAAAAACTTTCGAATAGTTC
4954434 AATGATCATT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
31 17 0.65
32 9 0.35
ACGTcount: A:0.43, C:0.12, G:0.10, T:0.35
Consensus pattern (32 bp):
AACTTAAATAAAAAACTTTCGAATAGTTCTGT
Found at i:4955304 original size:31 final size:31
Alignment explanation
Indices: 4955268--4955343 Score: 134
Period size: 31 Copynumber: 2.5 Consensus size: 31
4955258 TTAACGGCTT
*
4955268 AGTGACTAAAATGTTATAACACGTTAACGTA
1 AGTGACTAAAATGTTACAACACGTTAACGTA
*
4955299 AGTGACTAAAATGTTACAACACGTTAATGTA
1 AGTGACTAAAATGTTACAACACGTTAACGTA
4955330 AGTGACTAAAATGT
1 AGTGACTAAAATGT
4955344 AACATTTCAA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.29
Consensus pattern (31 bp):
AGTGACTAAAATGTTACAACACGTTAACGTA
Found at i:4956290 original size:36 final size:36
Alignment explanation
Indices: 4956250--4956322 Score: 103
Period size: 36 Copynumber: 2.0 Consensus size: 36
4956240 AGAAGTTTAA
* *
4956250 AGAAGCTGTCACGAG-TATAATTGATCGAGTTTGGGC
1 AGAAGCTGTCACGGGAT-TAATTGATCGAGCTTGGGC
*
4956286 AGAAGCTGTCATGGGATTAATTGATCGAGCTTGGGC
1 AGAAGCTGTCACGGGATTAATTGATCGAGCTTGGGC
4956322 A
1 A
4956323 TGCACTCCTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
36 32 0.97
37 1 0.03
ACGTcount: A:0.27, C:0.14, G:0.32, T:0.27
Consensus pattern (36 bp):
AGAAGCTGTCACGGGATTAATTGATCGAGCTTGGGC
Found at i:4958188 original size:31 final size:31
Alignment explanation
Indices: 4958153--4958216 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 31
4958143 GCCCCACCTT
*
4958153 TATTAT-TT-TTTTAATTTTTTAAAAATATTTA
1 TATTATATTATTTTAA-TATTTAAAAAT-TTTA
*
4958184 TATTATATTATTTTAATATTTAATAATTTTA
1 TATTATATTATTTTAATATTTAAAAATTTTA
4958215 TA
1 TA
4958217 CATTCTTTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
31 12 0.41
32 11 0.38
33 6 0.21
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (31 bp):
TATTATATTATTTTAATATTTAAAAATTTTA
Found at i:4972396 original size:97 final size:97
Alignment explanation
Indices: 4972230--4972757 Score: 1011
Period size: 97 Copynumber: 5.4 Consensus size: 97
4972220 TTAAATTATG
4972230 TATAAACAATCAATCAAGTTCCAATTTCGATGCTTATATAATATCCAAATTTAAGATTAAATCTG
1 TATAAACAATCAATCAAGTTCCAATTTCGATGCTTATATAATATCCAAATTTAAGATTAAATCTG
4972295 CATATTTTAATTAAAATATAATTCGGTACTTA
66 CATATTTTAATTAAAATATAATTCGGTACTTA
*
4972327 TATAAACAATCAATCAAGTTCCAATTTCGATGCTTATATAATATCGAAATTTAAGATTAAATCTG
1 TATAAACAATCAATCAAGTTCCAATTTCGATGCTTATATAATATCCAAATTTAAGATTAAATCTG
4972392 CATATTTTAATTAAAATATAATTCGGTACTTA
66 CATATTTTAATTAAAATATAATTCGGTACTTA
*
4972424 TATAAACAATCAATCAAGTTCCAATTTCGATGCTTATATAATATCCAAATTTAAGATTAAATCTT
1 TATAAACAATCAATCAAGTTCCAATTTCGATGCTTATATAATATCCAAATTTAAGATTAAATCTG
4972489 CATATTTTAATTAAAATATAATTCGGTACTTA
66 CATATTTTAATTAAAATATAATTCGGTACTTA
*
4972521 TATAAACAATCAATCAAGTTCCAATTTCGATGCTTATATAATATCGAAATTTAAGATTAAATCTG
1 TATAAACAATCAATCAAGTTCCAATTTCGATGCTTATATAATATCCAAATTTAAGATTAAATCTG
4972586 CATATTTTAATTAAAATATAATTCGGTACTTA
66 CATATTTTAATTAAAATATAATTCGGTACTTA
4972618 TATAAACAATCAATCCAAGTTCCAATTTCGATGCTTATATAATATCCAAATTTAAGATTAAATCT
1 TATAAACAATCAAT-CAAGTTCCAATTTCGATGCTTATATAATATCCAAATTTAAGATTAAATCT
*
4972683 TCATATTTTAATTAAAATATAATTCGGTACTTA
65 GCATATTTTAATTAAAATATAATTCGGTACTTA
4972716 TATAAACAATCAATCAAGTTCCAATTTCGATGCTTATATAAT
1 TATAAACAATCAATCAAGTTCCAATTTCGATGCTTATATAAT
4972758 TGTTATTAAA
Statistics
Matches: 423, Mismatches: 7, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
97 328 0.78
98 95 0.22
ACGTcount: A:0.41, C:0.13, G:0.07, T:0.38
Consensus pattern (97 bp):
TATAAACAATCAATCAAGTTCCAATTTCGATGCTTATATAATATCCAAATTTAAGATTAAATCTG
CATATTTTAATTAAAATATAATTCGGTACTTA
Found at i:4972830 original size:23 final size:23
Alignment explanation
Indices: 4972795--4972839 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
4972785 CCTTATTTAA
**
4972795 TTCAAATTGATTAT-AATATTATT
1 TTCAAATAAATTATCAA-ATTATT
4972818 TTCAAATAAATTATCAAATTAT
1 TTCAAATAAATTATCAAATTAT
4972840 AAAATGACAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 17 0.89
24 2 0.11
ACGTcount: A:0.44, C:0.07, G:0.02, T:0.47
Consensus pattern (23 bp):
TTCAAATAAATTATCAAATTATT
Found at i:4972862 original size:11 final size:11
Alignment explanation
Indices: 4972846--4972883 Score: 76
Period size: 11 Copynumber: 3.5 Consensus size: 11
4972836 TTATAAAATG
4972846 ACAATATCTCA
1 ACAATATCTCA
4972857 ACAATATCTCA
1 ACAATATCTCA
4972868 ACAATATCTCA
1 ACAATATCTCA
4972879 ACAAT
1 ACAAT
4972884 TGATAAAATC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.47, C:0.26, G:0.00, T:0.26
Consensus pattern (11 bp):
ACAATATCTCA
Found at i:4976067 original size:92 final size:91
Alignment explanation
Indices: 4975910--4976118 Score: 260
Period size: 92 Copynumber: 2.3 Consensus size: 91
4975900 TTGATTTTAG
* * * *
4975910 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCACTGTTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATAACTATTAAATTAT
** *
4975975 ATTTAAT-ATTAATTATTTTAAATTGTA
65 ATGCAATAATT-ATTATTTTAAATTATA
*
4976002 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATT-TAATATTAATTATTAAATTA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTAT-ATA-TAACTATTAAATTA
4976066 TATGCAATAATTATTATTTTAAATTATA
64 TATGCAATAATTATTATTTTAAATTATA
* * * *
4976094 CAAATTCATAAAATATAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
4976119 GTTATAATTA
Statistics
Matches: 102, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
90 1 0.01
91 29 0.28
92 69 0.68
93 3 0.03
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.46
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATAACTATTAAATTATA
TGCAATAATTATTATTTTAAATTATA
Found at i:4976247 original size:66 final size:64
Alignment explanation
Indices: 4976172--4976382 Score: 194
Period size: 66 Copynumber: 3.4 Consensus size: 64
4976162 AAATATATTT
*
4976172 AATATTAATTATTTCAAATTTTCATTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
1 AATATTAATTATTT-AAATTTT-ATTTAAAGTATCATATATTATGATTTGAGTAAATTCATATAA
4976237 G
64 G
* * * **
4976238 AATATTAATTATTAAGAATTTTA-TTAAATTA-CATAT-TT-T-AATT-A-T-AA-T-ATAT-TT
1 AATATTAATTATTTA-AATTTTATTTAAAGTATCATATATTATGATTTGAGTAAATTCATATAAG
* *
4976292 AATAATAATTATGTT-AATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTCATATA
1 AATATTAATTAT-TTAAATTT-TA-TTTAAAGTATCATATATTATGATTTGAGTAAATTCATATA
4976356 AG
63 AG
*
4976358 AATATTAATTATTAAGAATTTTATT
1 AATATTAATTATTTA-AATTTTATT
4976383 AAATTATATA
Statistics
Matches: 113, Mismatches: 15, Indels: 35
0.69 0.09 0.21
Matches are distributed among these distances:
53 5 0.04
54 13 0.12
55 5 0.04
56 7 0.06
57 7 0.06
58 3 0.03
59 2 0.02
60 6 0.05
61 2 0.02
62 3 0.03
63 7 0.06
64 7 0.06
65 9 0.08
66 32 0.28
67 5 0.04
ACGTcount: A:0.42, C:0.04, G:0.06, T:0.48
Consensus pattern (64 bp):
AATATTAATTATTTAAATTTTATTTAAAGTATCATATATTATGATTTGAGTAAATTCATATAAG
Found at i:4976274 original size:120 final size:120
Alignment explanation
Indices: 4976134--4976426 Score: 484
Period size: 120 Copynumber: 2.4 Consensus size: 120
4976124 AATTATTTTA
* * * *
4976134 AATTTTATTAAATCATATATTTTAAATAAAATATATTTAATATTAATTAT-TTCAAATTT-TCA-
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT--AATTTAT-AT
*
4976196 TTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
63 TTTACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
4976254 AATTTTATTAAATTACATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
4976319 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
4976374 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
4976427 TAAATATGAT
Statistics
Matches: 163, Mismatches: 7, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
119 6 0.04
120 155 0.95
121 2 0.01
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.49
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:4976294 original size:15 final size:15
Alignment explanation
Indices: 4976270--4976310 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
4976260 ATTAAATTAC
4976270 ATAT-TTTAATTATA
1 ATATATTTAATTATA
*
4976284 ATATATTTAATAATA
1 ATATATTTAATTATA
4976299 AT-TATGTTAATT
1 ATATAT-TTAATT
4976311 TATATTTTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
14 7 0.30
15 16 0.70
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATATATTTAATTATA
Found at i:4976409 original size:16 final size:16
Alignment explanation
Indices: 4976388--4976429 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
4976378 TTATTAAATT
*
4976388 ATATATTTTAATTATA
1 ATATATTTTAATAATA
4976404 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
4976419 AT-TATGTTTAA
1 ATATAT-TTTAA
4976430 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:4976414 original size:15 final size:15
Alignment explanation
Indices: 4976379--4976420 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
4976369 TTAAGAATTT
*
4976379 TATTAAATTAT-ATA
1 TATTTAATTATAATA
4976393 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
4976407 TATTTAATAATAAT
1 TATTTAATTATAAT
4976421 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:4976540 original size:153 final size:153
Alignment explanation
Indices: 4976363--4976649 Score: 502
Period size: 153 Copynumber: 1.9 Consensus size: 153
4976353 ATAAGAATAT
* * *
4976363 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATGAAATTATATATTTTAATTAAAATAGATTTAATAATAATTATGTTT
* * * *
4976428 AAATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATACCAA
66 AAAAATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
4976493 TAATTACCAAAAAAAATTTCTGC
131 TAATTACCAAAAAAAATTTCTGC
*
4976516 TAATTATTAAGAATTTTATGAAATTATATATTTTAATTAAAATGGATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATGAAATTATATATTTTAATTAAAATAGATTTAATAATAATTATGTTT
4976581 AAAAATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAAAATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
4976646 TAAT
131 TAAT
4976650 CATTTACCAA
Statistics
Matches: 126, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
153 126 1.00
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.44
Consensus pattern (153 bp):
TAATTATTAAGAATTTTATGAAATTATATATTTTAATTAAAATAGATTTAATAATAATTATGTTT
AAAAATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
TAATTACCAAAAAAAATTTCTGC
Found at i:4980259 original size:2 final size:2
Alignment explanation
Indices: 4980254--4980280 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
4980244 TATATATATA
4980254 TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG T
4980281 ATGTTATAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:4982272 original size:20 final size:19
Alignment explanation
Indices: 4982243--4982293 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 19
4982233 TATATAAATA
*
4982243 TTTTTA-ATAAATGTTTAT
1 TTTTTAGATAAATATTTAT
*
4982261 TGTTTTAGATAATTATTTAT
1 T-TTTTAGATAAATATTTAT
4982281 TTGTTTAGATAAA
1 TT-TTTAGATAAA
4982294 AGAATAAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 1 0.04
19 6 0.22
20 20 0.74
ACGTcount: A:0.33, C:0.00, G:0.10, T:0.57
Consensus pattern (19 bp):
TTTTTAGATAAATATTTAT
Found at i:4998964 original size:22 final size:21
Alignment explanation
Indices: 4998938--4998978 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
4998928 AATTTAAATG
4998938 ATTATACTTTAATTTTATATTA
1 ATTAT-CTTTAATTTTATATTA
* *
4998960 ATTATTTTTTATTTTATAT
1 ATTATCTTTAATTTTATAT
4998979 CTAACTATTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (21 bp):
ATTATCTTTAATTTTATATTA
Found at i:5003741 original size:19 final size:19
Alignment explanation
Indices: 5003717--5003756 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
5003707 CCTGGTTTTG
5003717 TTCTCCCGTTCGTTCTCCC
1 TTCTCCCGTTCGTTCTCCC
*
5003736 TTCTCCCTTTCGTTCTCCC
1 TTCTCCCGTTCGTTCTCCC
5003755 TT
1 TT
5003757 GATTTGGTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.00, C:0.45, G:0.07, T:0.47
Consensus pattern (19 bp):
TTCTCCCGTTCGTTCTCCC
Found at i:5005447 original size:18 final size:18
Alignment explanation
Indices: 5005424--5005462 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
5005414 TTTACCAACT
5005424 TTATGGATAATAATTTAA
1 TTATGGATAATAATTTAA
5005442 TTATGGATAATAATTTAA
1 TTATGGATAATAATTTAA
5005460 TTA
1 TTA
5005463 AAGATACAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.44, C:0.00, G:0.10, T:0.46
Consensus pattern (18 bp):
TTATGGATAATAATTTAA
Found at i:5005468 original size:18 final size:18
Alignment explanation
Indices: 5005429--5005468 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
5005419 CAACTTTATG
**
5005429 GATAATAATTTAATTATG
1 GATAATAATTTAATTAAA
5005447 GATAATAATTTAATTAAA
1 GATAATAATTTAATTAAA
5005465 GATA
1 GATA
5005469 CAACATAATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (18 bp):
GATAATAATTTAATTAAA
Found at i:5006111 original size:20 final size:20
Alignment explanation
Indices: 5006086--5006125 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
5006076 AATATTTTCC
*
5006086 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
5006106 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
5006126 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:5006131 original size:34 final size:35
Alignment explanation
Indices: 5006074--5006140 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
5006064 CAAACACTAG
*
5006074 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
5006109 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
5006141 CATTTTACTA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.46, C:0.13, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:5006132 original size:14 final size:14
Alignment explanation
Indices: 5006109--5006148 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
5006099 ACAGAAAAGT
*
5006109 AAAACATTTTCCAG
1 AAAACATTTTACAG
* *
5006123 AAATCATTTTACGG
1 AAAACATTTTACAG
5006137 AAAACATTTTAC
1 AAAACATTTTAC
5006149 TAGCAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:5006686 original size:72 final size:71
Alignment explanation
Indices: 5006607--5006804 Score: 272
Period size: 72 Copynumber: 2.7 Consensus size: 71
5006597 AGAATTCGAC
* * *
5006607 GCATCTTATAACAATTTGAGTGGCCCAATTCCAAATTGGTTATGCAATATGAGTCAACTTAGA-T
1 GCATCTTATAACAATTTGAGTGGCCCAATTCCAAATTGCTT-GGCAATATGAGTCAACTT-GACA
* *
5006671 TTTTTAAT
64 GTTTCAAT
* *
5006679 GCATCTTATAACAATTTGAGTGGCTCAATTCCAAACTGCTTGGACAATATGAGTCAACTTGACAG
1 GCATCTTATAACAATTTGAGTGGCCCAATTCCAAATTGCTTGG-CAATATGAGTCAACTTGACAG
*
5006744 TTTCGAT
65 TTTCAAT
*
5006751 GTATCTTATAACAATTTGAGTGGCCCAATTCCAAATTGCTTGGGCAATATGAGT
1 GCATCTTATAACAATTTGAGTGGCCCAATTCCAAATTGCTT-GGCAATATGAGT
5006805 GCTCTCTATT
Statistics
Matches: 112, Mismatches: 11, Indels: 6
0.87 0.09 0.05
Matches are distributed among these distances:
71 3 0.03
72 107 0.96
73 2 0.02
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (71 bp):
GCATCTTATAACAATTTGAGTGGCCCAATTCCAAATTGCTTGGCAATATGAGTCAACTTGACAGT
TTCAAT
Found at i:5013576 original size:23 final size:23
Alignment explanation
Indices: 5013541--5013584 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
5013531 GAGTGAAAAA
5013541 AAAATACT-AAAAATCATATTTGT
1 AAAATACTAAAAAAT-ATATTTGT
* *
5013564 AAAATATTTAAAAATATATTT
1 AAAATACTAAAAAATATATTT
5013585 ATCTTTTACA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.39
Consensus pattern (23 bp):
AAAATACTAAAAAATATATTTGT
Found at i:5016500 original size:21 final size:19
Alignment explanation
Indices: 5016464--5016505 Score: 57
Period size: 21 Copynumber: 2.1 Consensus size: 19
5016454 TATGATGAAT
5016464 AAATACTATAAATTATGTA
1 AAATACTATAAATTATGTA
*
5016483 AAATATCTATACAATTATTTA
1 AAATA-CTATA-AATTATGTA
5016504 AA
1 AA
5016506 CCCCTGGCTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 5 0.25
20 5 0.25
21 10 0.50
ACGTcount: A:0.52, C:0.07, G:0.02, T:0.38
Consensus pattern (19 bp):
AAATACTATAAATTATGTA
Found at i:5019155 original size:154 final size:151
Alignment explanation
Indices: 5018872--5019696 Score: 1101
Period size: 154 Copynumber: 5.4 Consensus size: 151
5018862 CAATTATTCG
* * * * *
5018872 TATTTTGGCCATTTGTTTGTATTTTTTTCCCGGATTTTATTACTTTTAAAAAAATACTA--TTTT
1 TATTTCGGCCCTTTGTTCGTATTTTTTTCCCGAATTTTATTACTTTCAAAAAAATA-TATTTTTT
* **
5018935 CTAATTTTTTTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTAATTT
65 CT-ATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTGTTTT
*
5019000 TTAAATAAATTTAGAAAAACTCT
129 TTAAATAAATTTAAAAAAACTCT
*
5019023 TATTTCAGCCCTTTGTTCGTATTTTTTTCCCGAATTTTATTACTTTCAATAAAAATATATTTTTT
1 TATTTCGGCCCTTTGTTCGTATTTTTTTCCCGAATTTTATTACTTTCAA-AAAAATATA-TTTTT
* * *
5019088 TCGTATTTTATTATTTTACGTTATTTTAGTACATTATGTTTGAAATATATTAATTTACTGTGTTT
64 TC-TATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTGTTT
* *
5019153 TTTAAATAAATTTAAAAAAA-ACG
128 TTTAAATAAATTTAAAAAAACTCT
* * *
5019176 TATTTCGGCCCTTTGTTTGTATTTTTTTCCCCAGAGTTTATTACTTT-AAAAAAATACTA--TTT
1 TATTTCGGCCCTTTGTTCGTATTTTTTTCCCGA-ATTTTATTACTTTCAAAAAAATA-TATTTTT
*
5019238 TCTAATTTTATTATTTTACATTATTTTAGTACATTATATTTGAAATGTATTAATTTAGTGTGTTT
64 TCT-ATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTGTTT
*
5019303 TTTAAATAATTTTTTAAAAAAAAACTCT
128 TTTAAATAA--ATTT--AAAAAAACTCT
*
5019331 TATTTCGGCCCTTTGTTCGTATTTTTTTCCCGGATTTTATTACTTTCAATAAAAATATATTATTT
1 TATTTCGGCCCTTTGTTCGTATTTTTTTCCCGAATTTTATTACTTTCAA-AAAAATATATT-TTT
*
5019396 TCGTATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTACTGTGTTT
64 TC-TATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTGTTT
5019461 TTTAAATAAATTTTTAAAAAAAC-CTT
128 TTTAAATAAA--TTTAAAAAAACTC-T
* *
5019487 TATTTCGGCCCTTTGTTCGTATTTTTTTCCCCAGAGTTTATTACTTT-AAAAAATATACTATTTT
1 TATTTCGGCCCTTTGTTCGTATTTTTTTCCCGA-ATTTTATTACTTTCAAAAAA-ATA-TATTTT
* * *
5019551 TT-AATTTTATTATTTTACATTATTTTAGTACAATATGTTTGAAATGTATTCATTTAGTGTGTTT
63 TTCTATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTGTTT
5019615 TTTAAATAAATTTAAAAAAAAAACTCT
128 TTTAAATAAATTT---AAAAAAACTCT
* *
5019642 TATTTCGGCCCTTTGTTCGTATTTTTTTCTCGAATCTTATTACTTTCAATAAAAA
1 TATTTCGGCCCTTTGTTCGTATTTTTTTCCCGAATTTTATTACTTTCAA-AAAAA
5019697 ACACACTAAA
Statistics
Matches: 599, Mismatches: 44, Indels: 58
0.85 0.06 0.08
Matches are distributed among these distances:
149 1 0.00
150 71 0.12
151 45 0.08
152 20 0.03
153 35 0.06
154 189 0.32
155 84 0.14
156 61 0.10
157 16 0.03
158 76 0.13
159 1 0.00
ACGTcount: A:0.30, C:0.10, G:0.08, T:0.52
Consensus pattern (151 bp):
TATTTCGGCCCTTTGTTCGTATTTTTTTCCCGAATTTTATTACTTTCAAAAAAATATATTTTTTC
TATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTGTTTTTT
AAATAAATTTAAAAAAACTCT
Found at i:5019440 original size:308 final size:307
Alignment explanation
Indices: 5018870--5019696 Score: 1347
Period size: 308 Copynumber: 2.7 Consensus size: 307
5018860 ACCAATTATT
* * * *
5018870 CGTATTTTGGCCATTTGTTTGTATTTTTTT-CCCGGATTTTATTACTTTTAAAAAAATACTATTT
1 CGTATTTCGGCCCTTTGTTTGTATTTTTTTCCCCAGAGTTTATTAC-TTTAAAAAAATACTATTT
* **
5018934 TCTAATTTTTTTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTAATT
65 TCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTGTTT
* * *
5018999 TTTAAATAAATTT--AGAAAAACTCTTATTTCAGCCCTTTGTTCGTATTTTTTTCCCGAATTTTA
130 TTTAAATAATTTTAAAAAAAAACTCTTATTTCGGCCCTTTGTTCGTATTTTTTTCCCGAATTTTA
* *
5019062 TTACTTTCAATAAAAATATATTTTTTTCGTATTTTATTATTTTACGTTATTTTAGTACATTATGT
195 TTACTTTCAATAAAAATATATTATTTTCGTATTTTATTATTTTACATTATTTTAGTACATTATGT
5019127 TTGAAATATATTAATTTACTGTGTTTTTTAAATAAA-TTTAAAAAAAA
260 TTGAAATATATTAATTTACTGTGTTTTTTAAATAAATTTTAAAAAAAA
5019174 CGTATTTCGGCCCTTTGTTTGTATTTTTTTCCCCAGAGTTTATTACTTTAAAAAAATACTATTTT
1 CGTATTTCGGCCCTTTGTTTGTATTTTTTTCCCCAGAGTTTATTACTTTAAAAAAATACTATTTT
*
5019239 CTAATTTTATTATTTTACATTATTTTAGTACATTATATTTGAAATGTATTAATTTAGTGTGTTTT
66 CTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTGTTTT
*
5019304 TTAAATAATTTTTTAAAAAAAAACTCTTATTTCGGCCCTTTGTTCGTATTTTTTTCCCGGATTTT
131 TTAAATAA--TTTTAAAAAAAAACTCTTATTTCGGCCCTTTGTTCGTATTTTTTTCCCGAATTTT
5019369 ATTACTTTCAATAAAAATATATTATTTTCGTATTTTATTATTTTACATTATTTTAGTACATTATG
194 ATTACTTTCAATAAAAATATATTATTTTCGTATTTTATTATTTTACATTATTTTAGTACATTATG
* *
5019434 TTTGAAATGTATTAATTTACTGTGTTTTTTAAATAAATTTTTAAAAAAAC
259 TTTGAAATATATTAATTTACTGTGTTTTTTAAATAAA-TTTTAAAAAAAA
* *
5019484 CTTTATTTCGGCCCTTTGTTCGTATTTTTTTCCCCAGAGTTTATTACTTTAAAAAATATACTATT
1 C-GTATTTCGGCCCTTTGTTTGTATTTTTTTCCCCAGAGTTTATTACTTTAAAAAA-ATACTATT
* * *
5019549 TTTTAATTTTATTATTTTACATTATTTTAGTACAATATGTTTGAAATGTATTCATTTAGTGTGTT
64 TTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTGTT
* * *
5019614 TTTTAAATAAATTTAAAAAAAAAACTCTTATTTCGGCCCTTTGTTCGTATTTTTTTCTCGAATCT
129 TTTTAAAT-AATTTTAAAAAAAAACTCTTATTTCGGCCCTTTGTTCGTATTTTTTTCCCGAATTT
5019679 TATTACTTTCAATAAAAA
193 TATTACTTTCAATAAAAA
5019697 ACACACTAAA
Statistics
Matches: 487, Mismatches: 26, Indels: 13
0.93 0.05 0.02
Matches are distributed among these distances:
304 116 0.24
305 13 0.03
306 3 0.01
308 145 0.30
310 11 0.02
311 120 0.25
312 77 0.16
313 2 0.00
ACGTcount: A:0.30, C:0.10, G:0.08, T:0.51
Consensus pattern (307 bp):
CGTATTTCGGCCCTTTGTTTGTATTTTTTTCCCCAGAGTTTATTACTTTAAAAAAATACTATTTT
CTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTGTTTT
TTAAATAATTTTAAAAAAAAACTCTTATTTCGGCCCTTTGTTCGTATTTTTTTCCCGAATTTTAT
TACTTTCAATAAAAATATATTATTTTCGTATTTTATTATTTTACATTATTTTAGTACATTATGTT
TGAAATATATTAATTTACTGTGTTTTTTAAATAAATTTTAAAAAAAA
Found at i:5025707 original size:4 final size:4
Alignment explanation
Indices: 5025698--5025726 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
5025688 GCATCCAGGG
5025698 ATTA ATTA ATTA ATTA ATTA ATTA ATTA A
1 ATTA ATTA ATTA ATTA ATTA ATTA ATTA A
5025727 CAATTAAGTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (4 bp):
ATTA
Found at i:5026981 original size:35 final size:35
Alignment explanation
Indices: 5026934--5027004 Score: 108
Period size: 35 Copynumber: 2.0 Consensus size: 35
5026924 TTATAGGTAA
* *
5026934 ACTACACTTAATGTTTTTAAATTATTGGTAAGTTT
1 ACTACACTTAATGTTTCTAAATTATTAGTAAGTTT
5026969 ACTACA-TCTAATGTTTCTAAATTATTAGTAAGTTT
1 ACTACACT-TAATGTTTCTAAATTATTAGTAAGTTT
5027004 A
1 A
5027005 TTTTTTGGTC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
34 1 0.03
35 32 0.97
ACGTcount: A:0.34, C:0.10, G:0.10, T:0.46
Consensus pattern (35 bp):
ACTACACTTAATGTTTCTAAATTATTAGTAAGTTT
Found at i:5031748 original size:160 final size:159
Alignment explanation
Indices: 5031436--5031772 Score: 584
Period size: 160 Copynumber: 2.1 Consensus size: 159
5031426 GTTAATTGAT
* *
5031436 TTTAAGTTGGATGCTTAACATCGTATTTAACATCCAAGTTGTGTTCTGTTGTTATTGTCTATTTT
1 TTTAAGTTGGATGCTTAACATCGTATTTAACACCCAAGTTGTGTTCTATTGTTATTGTCTATTTT
*
5031501 CTGACCAATAGCCCTTTCGAGTTTGTTACATTATAACCTCTTTTGTCTTCATGAGTATTAATTCG
66 CTGACCAATAACCCTTTCGAGTTTGTTACATTATAACCTCTTTTGTCTTCATGAGTATTAATTCG
* *
5031566 ATTTTGTATTATTTGTGATGCCAATTAAC
131 ATTTTGTATTATCTGCGATGCCAATTAAC
* *
5031595 TTTAAGTTGGATGCTTAACATCGTATTTAACGCCCAAGTTTTGTTCTATTGTTATTGTCTATTTT
1 TTTAAGTTGGATGCTTAACATCGTATTTAACACCCAAGTTGTGTTCTATTGTTATTGTCTATTTT
*
5031660 CTGACCCAATAACCCTTTCGAGTTTGTTACATTATAACCTCTTTTGTCTTCGTGAGTATTAATTC
66 CTGA-CCAATAACCCTTTCGAGTTTGTTACATTATAACCTCTTTTGTCTTCATGAGTATTAATTC
5031725 GATTTTGTATTATCTGCGATGCCAATTAAC
130 GATTTTGTATTATCTGCGATGCCAATTAAC
*
5031755 TTTAAGTTGGGTGCTTAA
1 TTTAAGTTGGATGCTTAA
5031773 AAATCCCATA
Statistics
Matches: 168, Mismatches: 9, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
159 65 0.39
160 103 0.61
ACGTcount: A:0.23, C:0.16, G:0.15, T:0.45
Consensus pattern (159 bp):
TTTAAGTTGGATGCTTAACATCGTATTTAACACCCAAGTTGTGTTCTATTGTTATTGTCTATTTT
CTGACCAATAACCCTTTCGAGTTTGTTACATTATAACCTCTTTTGTCTTCATGAGTATTAATTCG
ATTTTGTATTATCTGCGATGCCAATTAAC
Found at i:5040093 original size:40 final size:41
Alignment explanation
Indices: 5040048--5040127 Score: 117
Period size: 42 Copynumber: 2.0 Consensus size: 41
5040038 TACATTACAC
* *
5040048 TCTTAAAAGAG-ATAAATTCGAGCTTTTAAGATAACATTAT
1 TCTTAAAAGAGTACAAATTCGAGCTTTAAAGATAACATTAT
*
5040088 TCTTAAAAGAGTTACAAATTCGAGCTTTAAAGATGACATT
1 TCTTAAAAGAG-TACAAATTCGAGCTTTAAAGATAACATT
5040128 GTTTAAAAGT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
40 11 0.31
42 24 0.69
ACGTcount: A:0.41, C:0.11, G:0.14, T:0.34
Consensus pattern (41 bp):
TCTTAAAAGAGTACAAATTCGAGCTTTAAAGATAACATTAT
Found at i:5040437 original size:20 final size:20
Alignment explanation
Indices: 5040391--5040438 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 20
5040381 CGAACTCAAG
* * *
5040391 TTTAAGATT-GGGTTTAGGG
1 TTTAAGGTTCGGGTTTAAGA
5040410 TTTAAGGTTCGGGTTTAAGA
1 TTTAAGGTTCGGGTTTAAGA
*
5040430 TTTGAGGTT
1 TTTAAGGTT
5040439 TTCAGATCGA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 8 0.33
20 16 0.67
ACGTcount: A:0.21, C:0.02, G:0.33, T:0.44
Consensus pattern (20 bp):
TTTAAGGTTCGGGTTTAAGA
Found at i:5041472 original size:24 final size:24
Alignment explanation
Indices: 5041445--5041494 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
5041435 AATTAAAGTC
*
5041445 AAATATATTATGCTAATAAATACT
1 AAATATATTATACTAATAAATACT
*
5041469 AAATATATTATACTCATAAATACT
1 AAATATATTATACTAATAAATACT
5041493 AA
1 AA
5041495 TTCTTTTAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.52, C:0.10, G:0.02, T:0.36
Consensus pattern (24 bp):
AAATATATTATACTAATAAATACT
Found at i:5042693 original size:33 final size:33
Alignment explanation
Indices: 5042624--5042721 Score: 108
Period size: 33 Copynumber: 2.9 Consensus size: 33
5042614 TTATACCCAT
* * *
5042624 CTATGCCGAATGCATAGATACATACACTTATTTTCAC
1 CTATGCCGAATGCAT--ACACATA-A-ATATATTCAC
5042661 CTATGCCGAATGCATACACATAAATATATTCAC
1 CTATGCCGAATGCATACACATAAATATATTCAC
* *
5042694 CTATGCCGAATGCA-ACATATATATATAT
1 CTATGCCGAATGCATACACATAAATATAT
5042722 ATACATATCT
Statistics
Matches: 56, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
32 12 0.21
33 22 0.39
34 1 0.02
35 6 0.11
37 15 0.27
ACGTcount: A:0.37, C:0.22, G:0.10, T:0.31
Consensus pattern (33 bp):
CTATGCCGAATGCATACACATAAATATATTCAC
Found at i:5042984 original size:41 final size:41
Alignment explanation
Indices: 5042938--5043093 Score: 226
Period size: 41 Copynumber: 3.8 Consensus size: 41
5042928 ACCGGCTCTT
*
5042938 AGCCTGCTAGACTTATAGTCCGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
5042979 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
*
5043020 AGCCTGCTAGACTTATAGTCTGAATAAT-T-TCACCGGCGTTA
1 AGCCTGCTAGACTTATAGTCTG-A-AATGTGTCACCGGCATTA
* * * *
5043061 AGCCTGCTAGACGTAAAGTCTGAATTATGTCAC
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCAC
5043094 TAACGATAAA
Statistics
Matches: 106, Mismatches: 5, Indels: 8
0.89 0.04 0.07
Matches are distributed among these distances:
39 2 0.02
40 2 0.02
41 97 0.92
42 2 0.02
43 3 0.03
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (41 bp):
AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
Found at i:5050598 original size:41 final size:41
Alignment explanation
Indices: 5050553--5050708 Score: 226
Period size: 41 Copynumber: 3.8 Consensus size: 41
5050543 ACCGGCTCTT
*
5050553 AGCCTGCTAGACTTATAGTCCGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
5050594 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
*
5050635 AGCCTGCTAGACTTATAGTCTGAATAAT-T-TCACCGGCGTTA
1 AGCCTGCTAGACTTATAGTCTG-A-AATGTGTCACCGGCATTA
* * * *
5050676 AGCCTGCTAGACGTAAAGTCTGAATTATGTCAC
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCAC
5050709 TAACGATAAA
Statistics
Matches: 106, Mismatches: 5, Indels: 8
0.89 0.04 0.07
Matches are distributed among these distances:
39 2 0.02
40 2 0.02
41 97 0.92
42 2 0.02
43 3 0.03
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (41 bp):
AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
Found at i:5057940 original size:33 final size:33
Alignment explanation
Indices: 5057871--5057968 Score: 108
Period size: 33 Copynumber: 2.9 Consensus size: 33
5057861 CTATACCCAT
* * *
5057871 CTATGCCGAATGCATAGATACATACACTTATTTTCAC
1 CTATGCCGAATGCAT--ACACATA-A-ATATATTCAC
5057908 CTATGCCGAATGCATACACATAAATATATTCAC
1 CTATGCCGAATGCATACACATAAATATATTCAC
* *
5057941 CTATGCCGAATGCA-ACATATATATATAT
1 CTATGCCGAATGCATACACATAAATATAT
5057969 ATATACATAT
Statistics
Matches: 56, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
32 12 0.21
33 22 0.39
34 1 0.02
35 6 0.11
37 15 0.27
ACGTcount: A:0.37, C:0.22, G:0.10, T:0.31
Consensus pattern (33 bp):
CTATGCCGAATGCATACACATAAATATATTCAC
Found at i:5058232 original size:41 final size:41
Alignment explanation
Indices: 5058187--5058342 Score: 226
Period size: 41 Copynumber: 3.8 Consensus size: 41
5058177 ACCGGCTCTT
*
5058187 AGCCTGCTAGACTTATAGTCCGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
5058228 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
*
5058269 AGCCTGCTAGACTTATAGTCTGAATAAT-T-TCACCGGCGTTA
1 AGCCTGCTAGACTTATAGTCTG-A-AATGTGTCACCGGCATTA
* * * *
5058310 AGCCTGCTAGACGTAAAGTCTGAATTATGTCAC
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCAC
5058343 TAACGATAAA
Statistics
Matches: 106, Mismatches: 5, Indels: 8
0.89 0.04 0.07
Matches are distributed among these distances:
39 2 0.02
40 2 0.02
41 97 0.92
42 2 0.02
43 3 0.03
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (41 bp):
AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
Found at i:5073149 original size:25 final size:25
Alignment explanation
Indices: 5073115--5073165 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
5073105 ATTAAGCTTT
5073115 TAAGCCCCCTCGAATCTGCAACCTC
1 TAAGCCCCCTCGAATCTGCAACCTC
*
5073140 TAAGCTCCCTCGAATCTGCAACCTC
1 TAAGCCCCCTCGAATCTGCAACCTC
5073165 T
1 T
5073166 TAGAATGCGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.41, G:0.12, T:0.24
Consensus pattern (25 bp):
TAAGCCCCCTCGAATCTGCAACCTC
Found at i:5073872 original size:15 final size:15
Alignment explanation
Indices: 5073852--5073881 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
5073842 AACTTACTAA
5073852 CAATTTAGTGACATT
1 CAATTTAGTGACATT
5073867 CAATTTAGTGACATT
1 CAATTTAGTGACATT
5073882 AGGTAGAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.40
Consensus pattern (15 bp):
CAATTTAGTGACATT
Done.