Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67659327
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 461372 characters in sequence are not A, C, G, or T
File 152 of 216
Found at i:48128037 original size:12 final size:11
Alignment explanation
Indices: 48128006--48128045 Score: 53
Period size: 12 Copynumber: 3.5 Consensus size: 11
48127996 TCTGGTAGGA
48128006 TGAATGTGAAG
1 TGAATGTGAAG
48128017 TGAATGTGAAG
1 TGAATGTGAAG
*
48128028 CTGAAAGTGAAGG
1 -TGAATGTGAA-G
48128041 TGAAT
1 TGAAT
48128046 CTTATTAACC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
11 11 0.44
12 13 0.52
13 1 0.04
ACGTcount: A:0.38, C:0.03, G:0.35, T:0.25
Consensus pattern (11 bp):
TGAATGTGAAG
Found at i:48135796 original size:50 final size:51
Alignment explanation
Indices: 48135626--48135818 Score: 237
Period size: 51 Copynumber: 3.8 Consensus size: 51
48135616 TGCCTATAAA
* * * *
48135626 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATC-GATAGATAATGGT
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCAAAAAGAT-TTGGT
* * * * ** * *
48135677 CACATGTGTAGTACTATGTGCAAGCTACTATGTGTACCGGAAGGTTTTGGT
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCAAAAAGATTTGGT
*
48135728 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGAATCAAAAAG-TTTGGT
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCAAAAAGATTTGGT
*
48135778 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCAAA
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCAAA
48135819 TGATAATAAT
Statistics
Matches: 122, Mismatches: 19, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
50 45 0.37
51 73 0.60
52 4 0.03
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (51 bp):
CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCAAAAAGATTTGGT
Found at i:48139918 original size:19 final size:20
Alignment explanation
Indices: 48139902--48139946 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 20
48139892 TTATGAAACT
*
48139902 TAATGCATATG-ATGAAATG
1 TAATGCAGATGAATGAAATG
48139921 TAATGCAGATGAATGAAATG
1 TAATGCAGATGAATGAAATG
48139941 -AATGCA
1 TAATGCA
48139947 AAAAGAGGCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 16 0.67
20 8 0.33
ACGTcount: A:0.44, C:0.07, G:0.22, T:0.27
Consensus pattern (20 bp):
TAATGCAGATGAATGAAATG
Found at i:48146541 original size:16 final size:16
Alignment explanation
Indices: 48146517--48146554 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
48146507 AGTCCTTGAC
*
48146517 TGATTTTTGAATATAT
1 TGATGTTTGAATATAT
*
48146533 TGATGTTTGAATTTAT
1 TGATGTTTGAATATAT
48146549 TG-TGTT
1 TGATGTT
48146555 AAAGCTTCGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 4 0.20
16 16 0.80
ACGTcount: A:0.24, C:0.00, G:0.18, T:0.58
Consensus pattern (16 bp):
TGATGTTTGAATATAT
Found at i:48156542 original size:17 final size:17
Alignment explanation
Indices: 48156516--48156555 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
48156506 CCAATGCACT
* *
48156516 AAAATGAAAATGTAATG
1 AAAATAAAAATGCAATG
48156533 AAAATAAAAATGCAATG
1 AAAATAAAAATGCAATG
*
48156550 ATAATA
1 AAAATA
48156556 TATACTTATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.62, C:0.03, G:0.12, T:0.23
Consensus pattern (17 bp):
AAAATAAAAATGCAATG
Found at i:48167225 original size:106 final size:106
Alignment explanation
Indices: 48167040--48167510 Score: 599
Period size: 106 Copynumber: 4.5 Consensus size: 106
48167030 TTACAAGTGA
* * * * * * *
48167040 TGATATGATAAAGGTTAGCTGATTTAATATCGCAATCTAAGTTTCTTTGAGTTAGTTTATTTAAG
1 TGATATTATAAAGGTTAGCTGATTTAAGATCACAACCTAAGTTTATTTGAGTTAGCTGATTTAAG
**
48167105 ATCA-CAACTCCTAAAACAGCTTGATGACCTACATTCACAGC
66 AT-AGCAACTCCTAAAACAGCTCAATGACCTACATTCACAGC
*
48167146 TGATATTATAAAGGTTAGCTGATTTACGATCACAACCTAAGTTTATTTGAGTTAGCTGATTTAAG
1 TGATATTATAAAGGTTAGCTGATTTAAGATCACAACCTAAGTTTATTTGAGTTAGCTGATTTAAG
* *
48167211 ATTAG-AACTCCTAAAATAGCTCAATGACCTACATTCATAGC
66 A-TAGCAACTCCTAAAACAGCTCAATGACCTACATTCACAGC
* * * * *
48167252 TGATATTATAAAGGTTAGTTAATTTAAGA-CTGCAACCTAAGTTTTTTTGAGTTAGCTGATTTGA
1 TGATATTATAAAGGTTAGCTGATTTAAGATC-ACAACCTAAGTTTATTTGAGTTAGCTGATTTAA
* * * * *
48167316 GATCGTAACTCCTAAAACATCTCACTGACCTACGTTCACAGC
65 GATAGCAACTCCTAAAACAGCTCAATGACCTACATTCACAGC
* * *
48167358 TGATATTATAAAGGTTAGCTGATTTAAGATCACAACCTAAGCTTCTTTGAGTTAGCTGATTTAAT
1 TGATATTATAAAGGTTAGCTGATTTAAGATCACAACCTAAGTTTATTTGAGTTAGCTGATTTAAG
* * * *
48167423 ATCGCAACTCCTAAAATAGCTCAATGACCTACGTTTACAGC
66 ATAGCAACTCCTAAAACAGCTCAATGACCTACATTCACAGC
* * *
48167464 TAATATTATAAAGGTTAGCTGATTTAAAAT-ACAACCCAAGTTTATTT
1 TGATATTATAAAGGTTAGCTGATTTAAGATCACAACCTAAGTTTATTT
48167511 AAATTTGTTC
Statistics
Matches: 319, Mismatches: 41, Indels: 11
0.86 0.11 0.03
Matches are distributed among these distances:
105 17 0.05
106 300 0.94
107 2 0.01
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.35
Consensus pattern (106 bp):
TGATATTATAAAGGTTAGCTGATTTAAGATCACAACCTAAGTTTATTTGAGTTAGCTGATTTAAG
ATAGCAACTCCTAAAACAGCTCAATGACCTACATTCACAGC
Found at i:48168249 original size:15 final size:15
Alignment explanation
Indices: 48168229--48168259 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
48168219 TCTTTAAGTC
48168229 AACCACCACAATTTT
1 AACCACCACAATTTT
48168244 AACCACCACAATTTT
1 AACCACCACAATTTT
48168259 A
1 A
48168260 CGTTCTTCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.42, C:0.32, G:0.00, T:0.26
Consensus pattern (15 bp):
AACCACCACAATTTT
Found at i:48171258 original size:47 final size:47
Alignment explanation
Indices: 48171207--48171699 Score: 797
Period size: 47 Copynumber: 10.4 Consensus size: 47
48171197 TTGTGATGTG
48171207 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
48171254 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
48171301 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
48171348 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
48171397 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
48171444 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
48171491 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGGTAAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
48171540 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
48171587 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * *
48171634 AGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
48171681 AGTGTATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
48171700 TCCCGAAGGG
Statistics
Matches: 418, Mismatches: 24, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
47 330 0.79
49 88 0.21
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:48171423 original size:143 final size:143
Alignment explanation
Indices: 48171211--48171699 Score: 874
Period size: 143 Copynumber: 3.4 Consensus size: 143
48171201 GATGTGAGTG
48171211 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
48171276 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
66 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
48171341 ATGTGAAAGTGTA
131 ATGTGAAAGTGTA
48171354 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
48171419 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
66 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
48171484 ATGTGAAAGTGTA
131 ATGTGAAAGTGTA
* *
48171497 TATATATGTGATAAGGCCTAATGGCCGATGTGGTAAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
48171562 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
66 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
48171627 ATGTGAAAGTG--
131 ATGTGAAAGTGTA
* * * * * * *
48171638 TATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
48171700 TCCCGAAGGG
Statistics
Matches: 334, Mismatches: 12, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
141 53 0.16
143 281 0.84
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (143 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
ATGTGAAAGTGTA
Found at i:48171490 original size:190 final size:188
Alignment explanation
Indices: 48171207--48171699 Score: 815
Period size: 190 Copynumber: 2.6 Consensus size: 188
48171197 TTGTGATGTG
48171207 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* * *
48171272 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
66 GGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
*
48171337 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
131 ATAAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
48171397 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* *
48171462 GGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATG
66 GGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATG
*
48171527 TGGTAAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
129 TGATAAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
48171587 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAG
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* * * *
48171652 GGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
66 GGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
48171700 TCCCGAAGGG
Statistics
Matches: 285, Mismatches: 16, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
188 14 0.05
190 228 0.80
192 43 0.15
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (188 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
GGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
ATAAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:48171874 original size:37 final size:37
Alignment explanation
Indices: 48171818--48171896 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
48171808 CCGAGCTCTA
* * *
48171818 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
* *
48171855 AAGACCCGATAACTTCGTGTGGAGATTATGTCTGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
48171892 AAGAC
1 AAGAC
48171897 TTTGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:48187923 original size:2 final size:2
Alignment explanation
Indices: 48187916--48187948 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
48187906 TTAAGCTTAA
48187916 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
48187949 TCAAATTTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:48190733 original size:16 final size:15
Alignment explanation
Indices: 48190712--48190750 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
48190702 ATTAATAAAA
48190712 AAATATTTATTTTTAG
1 AAATATTTATTTTT-G
* *
48190728 AAATATTCATTTTTT
1 AAATATTTATTTTTG
48190743 AAATATTT
1 AAATATTT
48190751 GATGACATGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 7 0.35
16 13 0.65
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (15 bp):
AAATATTTATTTTTG
Found at i:48191724 original size:31 final size:32
Alignment explanation
Indices: 48191677--48191737 Score: 90
Period size: 31 Copynumber: 1.9 Consensus size: 32
48191667 ACAATTCAGA
48191677 TCTTTTTAAAAGATTGATGG-TCAAATTTAATTT
1 TCTTTTT-AAAGATTGA-GGATCAAATTTAATTT
48191710 TCTTTTT-AAGATTGAGGATCAAATTTAA
1 TCTTTTTAAAGATTGAGGATCAAATTTAA
48191738 CTCCAAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
30 2 0.07
31 18 0.67
33 7 0.26
ACGTcount: A:0.34, C:0.07, G:0.13, T:0.46
Consensus pattern (32 bp):
TCTTTTTAAAGATTGAGGATCAAATTTAATTT
Found at i:48193175 original size:68 final size:68
Alignment explanation
Indices: 48193064--48193324 Score: 326
Period size: 68 Copynumber: 3.8 Consensus size: 68
48193054 CGAAATTAAG
* * *
48193064 AGTCCGCCAAGACATTAAACATGGATTCATAATGTGTAAGACCATAGCTAGGATATGACAATATA
1 AGTCCGCCAAGACATTAAACATGGGTTCATAATGTGTAAGACCATAGCTAGGCTATGACAACATA
48193129 TGA
66 TGA
* * * * *
48193132 AGTCCTCCAAGACATTAAACTTGAGTTTATAATGTGTATGACCATAGCTAGGCTATGACAACATA
1 AGTCCGCCAAGACATTAAACATGGGTTCATAATGTGTAAGACCATAGCTAGGCTATGACAACATA
*
48193197 TGG
66 TGA
* * * * * *
48193200 AGTTCGCTAGGACATTAAACATGGGTTCATACTGTGTAAGACCATACCTAGGCTATGGCAACATA
1 AGTCCGCCAAGACATTAAACATGGGTTCATAATGTGTAAGACCATAGCTAGGCTATGACAACATA
48193265 TGA
66 TGA
** * * *
48193268 AGTCTACCAAAACATTAAACATGGGTTCATACAT-TGTAAGACCATAGTTGGGCTATG
1 AGTCCGCCAAGACATTAAACATGGGTTCATA-ATGTGTAAGACCATAGCTAGGCTATG
48193325 GTGCCAGATA
Statistics
Matches: 161, Mismatches: 31, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
68 160 0.99
69 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (68 bp):
AGTCCGCCAAGACATTAAACATGGGTTCATAATGTGTAAGACCATAGCTAGGCTATGACAACATA
TGA
Found at i:48194980 original size:29 final size:29
Alignment explanation
Indices: 48194938--48195042 Score: 113
Period size: 29 Copynumber: 3.6 Consensus size: 29
48194928 CACCATCGGT
*
48194938 ACATAGTACCTGATAAATATAAAACTGAA
1 ACATAGTACCTGATAAATATAACACTGAA
* * * * *
48194967 ACATAGTGCTTGATAACTATAACACCGAT
1 ACATAGTACCTGATAAATATAACACTGAA
*
48194996 ACAAAGTACCTGATAAATATAATCACT-AA
1 ACATAGTACCTGATAAATATAA-CACTGAA
*
48195025 CACATAGTGCCTGATAAA
1 -ACATAGTACCTGATAAA
48195043 CCCTAATGAC
Statistics
Matches: 60, Mismatches: 14, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
29 42 0.70
30 18 0.30
ACGTcount: A:0.46, C:0.18, G:0.11, T:0.25
Consensus pattern (29 bp):
ACATAGTACCTGATAAATATAACACTGAA
Found at i:48198717 original size:40 final size:40
Alignment explanation
Indices: 48198660--48198740 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
48198650 CTCGAGAGTG
48198660 TTAGTTAACCTAAGGTTAAGGACAACGACTACCTCAAGTC
1 TTAGTTAACCTAAGGTTAAGGACAACGACTACCTCAAGTC
*
48198700 TTAGTTAACCTAGGGTTAAGGACAACGACTACCTCAAGTC
1 TTAGTTAACCTAAGGTTAAGGACAACGACTACCTCAAGTC
48198740 T
1 T
48198741 ATAAATAGGC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (40 bp):
TTAGTTAACCTAAGGTTAAGGACAACGACTACCTCAAGTC
Found at i:48202802 original size:27 final size:27
Alignment explanation
Indices: 48202768--48202945 Score: 198
Period size: 27 Copynumber: 6.6 Consensus size: 27
48202758 TAAATTGTAC
48202768 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
48202795 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
48202821 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
48202849 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
48202877 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
48202904 AGCACTAAGTGTGCGAGTTGA-TGATAT
1 AGCACTAAGTGTGCGATTTGACT-ATGT
*
48202931 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
48202946 GACTCAATAT
Statistics
Matches: 128, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
26 1 0.01
27 104 0.81
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:48202882 original size:82 final size:81
Alignment explanation
Indices: 48202769--48202924 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
48202759 AAATTGTACA
* *
48202769 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
48202833 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
48202850 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
48202915 TGCGAGTTGA
65 TGCGAATTGA
48202925 TGATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:48202936 original size:82 final size:81
Alignment explanation
Indices: 48202765--48202945 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
48202755 GAGTAAATTG
* *
48202765 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
48202830 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
48202846 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
48202910 AAGTGTGCGAGTTGATGA
64 AAGTGTGCGAATTGACCA
* *
48202928 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
48202946 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:48210975 original size:22 final size:22
Alignment explanation
Indices: 48210917--48210968 Score: 86
Period size: 22 Copynumber: 2.4 Consensus size: 22
48210907 TGTAACACCC
*
48210917 TGAATTTTGGGGTTAGAAGTTT
1 TGAATTTTGGGGTTAAAAGTTT
*
48210939 TGACTTTTGGGGTTAAAAGTTT
1 TGAATTTTGGGGTTAAAAGTTT
48210961 TGAATTTT
1 TGAATTTT
48210969 TCGGTTAGGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.23, C:0.02, G:0.27, T:0.48
Consensus pattern (22 bp):
TGAATTTTGGGGTTAAAAGTTT
Found at i:48215926 original size:33 final size:33
Alignment explanation
Indices: 48215879--48215942 Score: 112
Period size: 33 Copynumber: 1.9 Consensus size: 33
48215869 TGGATTGCCA
48215879 TCTGGGGTCTTCTTCTGGAATCTGTTGTTAGTC
1 TCTGGGGTCTTCTTCTGGAATCTGTTGTTAGTC
48215912 TCTGGGGT-TCTCTTCTGGAATCTGTTGTTAG
1 TCTGGGGTCT-TCTTCTGGAATCTGTTGTTAG
48215943 CCGTTCTGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
32 1 0.03
33 29 0.97
ACGTcount: A:0.09, C:0.17, G:0.28, T:0.45
Consensus pattern (33 bp):
TCTGGGGTCTTCTTCTGGAATCTGTTGTTAGTC
Found at i:48222680 original size:59 final size:59
Alignment explanation
Indices: 48222581--48222699 Score: 175
Period size: 59 Copynumber: 2.0 Consensus size: 59
48222571 GCATACATTA
* * *
48222581 AACCTACAGGGGAGACACGGTCATGTCGCCTAGCCATGTGTGACACACGGCTGAGTCAG
1 AACCTACAAGGGACACACGGTCATGTCGCCTAGCCATGTGTCACACACGGCTGAGTCAG
* * * *
48222640 AACCTACAAGGGACACATGGTCGTGTCGCCTGGCCGTGTGTCACACACGGCTGAGTCAG
1 AACCTACAAGGGACACACGGTCATGTCGCCTAGCCATGTGTCACACACGGCTGAGTCAG
48222699 A
1 A
48222700 CGCTCGTGTC
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
59 53 1.00
ACGTcount: A:0.24, C:0.28, G:0.30, T:0.18
Consensus pattern (59 bp):
AACCTACAAGGGACACACGGTCATGTCGCCTAGCCATGTGTCACACACGGCTGAGTCAG
Found at i:48223514 original size:41 final size:41
Alignment explanation
Indices: 48223466--48223610 Score: 211
Period size: 41 Copynumber: 3.5 Consensus size: 41
48223456 AAGTATAGAT
* *
48223466 AGGGGCACGTATGTGCAATTTAAGGGTATCGAAGTACAAAC
1 AGGGGCACGTATGTGCAATTCAAGGGTATCGAAATACAAAC
* * *
48223507 AGAGGCACTTATGTGCAATTCAAGGGTA-CTGAAATACAAAT
1 AGGGGCACGTATGTGCAATTCAAGGGTATC-GAAATACAAAC
* *
48223548 AGGGGCACGTATGTGCAATTCAGGGGTATCGAATTACAAAC
1 AGGGGCACGTATGTGCAATTCAAGGGTATCGAAATACAAAC
48223589 AGGGGCACGTATGTGCAATTCA
1 AGGGGCACGTATGTGCAATTCA
48223611 TTATTATTTT
Statistics
Matches: 92, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
40 1 0.01
41 90 0.98
42 1 0.01
ACGTcount: A:0.34, C:0.16, G:0.28, T:0.23
Consensus pattern (41 bp):
AGGGGCACGTATGTGCAATTCAAGGGTATCGAAATACAAAC
Found at i:48225489 original size:11 final size:13
Alignment explanation
Indices: 48225469--48225500 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
48225459 AAAATAATAA
48225469 TAAAATATC-ATT
1 TAAAATATCAATT
48225481 TAAAA-ATCAATT
1 TAAAATATCAATT
48225493 TAAAATAT
1 TAAAATAT
48225501 TAATCAACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 3 0.17
12 13 0.72
13 2 0.11
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (13 bp):
TAAAATATCAATT
Found at i:48230117 original size:19 final size:21
Alignment explanation
Indices: 48230092--48230139 Score: 57
Period size: 19 Copynumber: 2.4 Consensus size: 21
48230082 AACCTTTTTA
48230092 ATTTAATGTT-ATTTATAA-TG
1 ATTTAATGTTAATTT-TAATTG
*
48230112 -TTTAATCTTAATTTTAATTG
1 ATTTAATGTTAATTTTAATTG
48230132 ATTTAATG
1 ATTTAATG
48230140 CTATAATAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
19 11 0.48
20 6 0.26
21 6 0.26
ACGTcount: A:0.33, C:0.02, G:0.08, T:0.56
Consensus pattern (21 bp):
ATTTAATGTTAATTTTAATTG
Found at i:48230504 original size:12 final size:12
Alignment explanation
Indices: 48230459--48230512 Score: 65
Period size: 12 Copynumber: 4.3 Consensus size: 12
48230449 TATGCATAGG
48230459 CATTCTTTCTTA
1 CATTCTTTCTTA
*
48230471 CATTTATTTCTGTA
1 CA-TTCTTTCT-TA
48230485 -ATTTCTTTCTTA
1 CA-TTCTTTCTTA
48230497 CATTCTTTCTTA
1 CATTCTTTCTTA
48230509 CATT
1 CATT
48230513 TGCATTTATC
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
12 18 0.49
13 17 0.46
14 2 0.05
ACGTcount: A:0.19, C:0.20, G:0.02, T:0.59
Consensus pattern (12 bp):
CATTCTTTCTTA
Found at i:48246114 original size:18 final size:18
Alignment explanation
Indices: 48246091--48246128 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
48246081 TCATAATCAC
48246091 TTGAAAATTTCTTTTCAT
1 TTGAAAATTTCTTTTCAT
48246109 TTGAAAATTTCTTTTCAT
1 TTGAAAATTTCTTTTCAT
48246127 TT
1 TT
48246129 CTCATCTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.26, C:0.11, G:0.05, T:0.58
Consensus pattern (18 bp):
TTGAAAATTTCTTTTCAT
Found at i:48252202 original size:45 final size:45
Alignment explanation
Indices: 48252138--48252325 Score: 220
Period size: 45 Copynumber: 4.2 Consensus size: 45
48252128 TACTACGTGT
* *
48252138 ACTGGGTACCATTAATTATAAAGGTGGTTGCTGTGTGCTGATTCC
1 ACTGGGTATCATTAATTATAAAGGTGGTTGCTATGTGCTGATTCC
* * * *
48252183 ACTGGGTATGATTGATTATAAAGGTGGTTGTTGTGTGCTGATTCC
1 ACTGGGTATCATTAATTATAAAGGTGGTTGCTATGTGCTGATTCC
* *
48252228 ACCGGGTA-CTATTAATTATAAAGGTGGTTGCTATGTGTTGATTCC
1 ACTGGGTATC-ATTAATTATAAAGGTGGTTGCTATGTGCTGATTCC
* * * * *
48252273 ACCGAGTATCATTGACTATAAGGGTGG-TGCTATGTGCTGA-TCC
1 ACTGGGTATCATTAATTATAAAGGTGGTTGCTATGTGCTGATTCC
*
48252316 ACTGTGTATC
1 ACTGGGTATC
48252326 TGTTATTATT
Statistics
Matches: 124, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
43 11 0.09
44 12 0.10
45 100 0.81
46 1 0.01
ACGTcount: A:0.22, C:0.14, G:0.27, T:0.36
Consensus pattern (45 bp):
ACTGGGTATCATTAATTATAAAGGTGGTTGCTATGTGCTGATTCC
Found at i:48252299 original size:90 final size:88
Alignment explanation
Indices: 48252141--48252317 Score: 246
Period size: 90 Copynumber: 2.0 Consensus size: 88
48252131 TACGTGTACT
* * * * *
48252141 GGGTACCATTAATTATAAAGGTGGTTGCTGTGTGCTGATTCCACTGGGTATGATTGATTATAAAG
1 GGGTACCATTAATTATAAAGGTGGTTGCTATGTGCTGATTCCACCGAGTATCATTGACTATAAAG
* *
48252206 GTGGTTGTTGTGTGCTGATTCCACC
66 GTGG-TGCTATGTGCTGA-TCCACC
* * *
48252231 GGGTACTATTAATTATAAAGGTGGTTGCTATGTGTTGATTCCACCGAGTATCATTGACTATAAGG
1 GGGTACCATTAATTATAAAGGTGGTTGCTATGTGCTGATTCCACCGAGTATCATTGACTATAAAG
48252296 GTGGTGCTATGTGCTGATCCAC
66 GTGGTGCTATGTGCTGATCCAC
48252318 TGTGTATCTG
Statistics
Matches: 77, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
88 5 0.06
89 11 0.14
90 61 0.79
ACGTcount: A:0.23, C:0.14, G:0.28, T:0.36
Consensus pattern (88 bp):
GGGTACCATTAATTATAAAGGTGGTTGCTATGTGCTGATTCCACCGAGTATCATTGACTATAAAG
GTGGTGCTATGTGCTGATCCACC
Found at i:48258990 original size:12 final size:11
Alignment explanation
Indices: 48258964--48258997 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
48258954 TAGACCCAAC
48258964 TTGAATTAATT
1 TTGAATTAATT
*
48258975 TTGAATCTATTT
1 TTGAAT-TAATT
48258987 TTGAATTAATT
1 TTGAATTAATT
48258998 CACTTGTGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.32, C:0.03, G:0.09, T:0.56
Consensus pattern (11 bp):
TTGAATTAATT
Found at i:48261002 original size:44 final size:43
Alignment explanation
Indices: 48260878--48261003 Score: 146
Period size: 44 Copynumber: 2.9 Consensus size: 43
48260868 TACCATGGTG
** *
48260878 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGCCAC
1 AATCTTATCTCTTTGAAGTTGTAGTGGAGCAGATTGAAGCCAC
* * * *
48260921 AATCCTTATCTTTTTGAAGTTGTAATGGAGAAGATTGAAGCCATT
1 AAT-CTTATCTCTTTGAAGTTGTAGTGGAGCAGATTGAAGCCA-C
*
48260966 AATCTTATCTCTTTGAAGTT-TCAGTGGAGCATATTGAA
1 AATCTTATCTCTTTGAAGTTGT-AGTGGAGCAGATTGAA
48261004 ACAAAAAATC
Statistics
Matches: 69, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
43 4 0.06
44 62 0.90
45 3 0.04
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35
Consensus pattern (43 bp):
AATCTTATCTCTTTGAAGTTGTAGTGGAGCAGATTGAAGCCAC
Found at i:48261405 original size:45 final size:44
Alignment explanation
Indices: 48261356--48261460 Score: 111
Period size: 44 Copynumber: 2.4 Consensus size: 44
48261346 TTCCCTAAAG
* * *
48261356 TTATAGTGGAGTAGATCGAAGATAGCAAATCTTATCTTTCTGAAC
1 TTATAGTGGAGTAGATCAAAGATA-CAAACCTTATCTCTCTGAAC
* * * * *
48261401 TTATAGTAGAGTAGATTAAAGGTATAAACCTTATCTCTCTGAAG
1 TTATAGTGGAGTAGATCAAAGATACAAACCTTATCTCTCTGAAC
* *
48261445 TTACAGTGGAGAAGAT
1 TTATAGTGGAGTAGAT
48261461 TGAAATGATA
Statistics
Matches: 49, Mismatches: 11, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
44 29 0.59
45 20 0.41
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (44 bp):
TTATAGTGGAGTAGATCAAAGATACAAACCTTATCTCTCTGAAC
Found at i:48261461 original size:44 final size:44
Alignment explanation
Indices: 48261222--48261461 Score: 144
Period size: 45 Copynumber: 5.5 Consensus size: 44
48261212 TATACCCTCA
* * * * * * *
48261222 AAGTTGCAGTAGAGCAGATTGAAGATAGCAAATCTTATCGCTCTG
1 AAGTTACAGTAGAGAAGATTAAAGGTA-TAAACCTTATCTCTCTG
* * * *
48261267 AAGTTGCAGTAGAGCAGATTAAAGTTATAAACCTTA-C-CCCTG
1 AAGTTACAGTAGAGAAGATTAAAGGTATAAACCTTATCTCTCTG
* * * * * * * *
48261309 AAGTTGCAGT-GAGACAGATTGATGGTATAGATCTTATTTCCCTA
1 AAGTTACAGTAGAGA-AGATTAAAGGTATAAACCTTATCTCTCTG
* * * ** * * * *
48261353 AAGTTATAGTGGAGTAGATCGAAGATAGCAAATCTTATCTTTCTG
1 AAGTTACAGTAGAGAAGATTAAAGGTA-TAAACCTTATCTCTCTG
* * *
48261398 AACTTATAGTAGAGTAGATTAAAGGTATAAACCTTATCTCTCTG
1 AAGTTACAGTAGAGAAGATTAAAGGTATAAACCTTATCTCTCTG
*
48261442 AAGTTACAGTGGAGAAGATT
1 AAGTTACAGTAGAGAAGATT
48261462 GAAATGATAA
Statistics
Matches: 153, Mismatches: 37, Indels: 11
0.76 0.18 0.05
Matches are distributed among these distances:
41 3 0.02
42 30 0.20
43 1 0.01
44 58 0.38
45 61 0.40
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.30
Consensus pattern (44 bp):
AAGTTACAGTAGAGAAGATTAAAGGTATAAACCTTATCTCTCTG
Found at i:48263102 original size:61 final size:54
Alignment explanation
Indices: 48263026--48263204 Score: 175
Period size: 53 Copynumber: 3.2 Consensus size: 54
48263016 ATTTAATAAT
* *
48263026 AATATT-TATTTATTTATTTGCTCATTCCTTGTTTACTTTTAAAATATTTAGATTCA
1 AATATTATATTTATTTATTTGATCATT-CTT-TTTACTTTTAAAATATTTAAATT-A
* *
48263082 ACATTATTCATATTTGATTTATCAATTTATCATTCTTTTTAC-TTTAAAATATTTAAATTT
1 A-A-TATT-ATATTT-ATTTAT---TTGATCATTCTTTTTACTTTTAAAATATTTAAATTA
* * * *
48263142 AATATTAT-TTTATCTATTTGTTCATTATTTTTACTTTTAAAATATTTAAATTT
1 AATATTATATTTATTTATTTGATCATTCTTTTTACTTTTAAAATATTTAAATTA
48263195 AATATTATAT
1 AATATTATAT
48263205 GTATATCTAT
Statistics
Matches: 105, Mismatches: 8, Indels: 22
0.78 0.06 0.16
Matches are distributed among these distances:
52 14 0.13
53 26 0.25
54 1 0.01
55 5 0.05
56 4 0.04
57 3 0.03
58 8 0.08
59 1 0.01
60 6 0.06
61 22 0.21
62 5 0.05
63 3 0.03
64 7 0.07
ACGTcount: A:0.32, C:0.08, G:0.03, T:0.56
Consensus pattern (54 bp):
AATATTATATTTATTTATTTGATCATTCTTTTTACTTTTAAAATATTTAAATTA
Found at i:48263196 original size:53 final size:55
Alignment explanation
Indices: 48263111--48263216 Score: 173
Period size: 53 Copynumber: 2.0 Consensus size: 55
48263101 TATCAATTTA
*
48263111 TCATTCTTTTTACTTTAAAATATTTAAATTTAATATTAT-T-T-TATCTATTTGT
1 TCATTATTTTTACTTTAAAATATTTAAATTTAATATTATATGTATATCTATTTGT
48263163 TCATTATTTTTACTTTTAAAATATTTAAATTTAATATTATATGTATATCTATTT
1 TCATTATTTTTAC-TTTAAAATATTTAAATTTAATATTATATGTATATCTATTT
48263217 ATCTCCAAAT
Statistics
Matches: 49, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
52 12 0.24
53 26 0.53
54 1 0.02
55 1 0.02
56 9 0.18
ACGTcount: A:0.33, C:0.07, G:0.02, T:0.58
Consensus pattern (55 bp):
TCATTATTTTTACTTTAAAATATTTAAATTTAATATTATATGTATATCTATTTGT
Found at i:48271583 original size:4 final size:4
Alignment explanation
Indices: 48271570--48271615 Score: 60
Period size: 4 Copynumber: 11.8 Consensus size: 4
48271560 AAGGTTGAAG
*
48271570 AAAT -AAT AAAT AAAT GAAT AAAT AAAT AAAT AAA- ATAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT A-AAT AAAT AAA
48271616 ATAGTTTGTA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
3 4 0.11
4 32 0.86
5 1 0.03
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:48272950 original size:44 final size:44
Alignment explanation
Indices: 48272842--48273064 Score: 218
Period size: 44 Copynumber: 5.0 Consensus size: 44
48272832 GATTTGTAAC
* * * *
48272842 TTGTAGCTTCAATCTATTCCACCGTAA-TGTC-AGAGAAATAAGATT
1 TTGTAGCTTCAATCTACTCCACTGCAACT-TCAAG-GAGATAAGA-T
* * *
48272887 TTCTATCTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGAT
1 TTGTAGCTTCAATCTACTCCACTGCAACTTCAAGGAGATAAGAT
* *
48272931 TTGTAGCTTCAATCTGCTCCACTGCAACTTCATGGAGATAAGAT
1 TTGTAGCTTCAATCTACTCCACTGCAACTTCAAGGAGATAAGAT
* * *
48272975 TCGTAGCTTCAATCTACTCCACTGTAACTT-TAGAGAGATAAGAT
1 TTGTAGCTTCAATCTACTCCACTGCAACTTCAAG-GAGATAAGAT
** * * * * *
48273019 TCATAGCTTCAATCTATTCCACTGTAACTTTAGGGAGATACGAT
1 TTGTAGCTTCAATCTACTCCACTGCAACTTCAAGGAGATAAGAT
48273063 TT
1 TT
48273065 ACTACGGTTA
Statistics
Matches: 153, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
43 1 0.01
44 117 0.76
45 32 0.21
46 3 0.02
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (44 bp):
TTGTAGCTTCAATCTACTCCACTGCAACTTCAAGGAGATAAGAT
Found at i:48279803 original size:4 final size:4
Alignment explanation
Indices: 48279789--48279837 Score: 57
Period size: 4 Copynumber: 12.5 Consensus size: 4
48279779 AAAAAGGTTG
* *
48279789 AATA AAT- AATA AATA AATA AATA ACTA AATA ACTA AA-A TAATA AATA
1 AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA -AATA AATA
48279836 AA
1 AA
48279838 ACACTTTGTA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
3 4 0.11
4 33 0.87
5 1 0.03
ACGTcount: A:0.71, C:0.04, G:0.00, T:0.24
Consensus pattern (4 bp):
AATA
Found at i:48279817 original size:12 final size:11
Alignment explanation
Indices: 48279789--48279837 Score: 50
Period size: 11 Copynumber: 4.5 Consensus size: 11
48279779 AAAAAGGTTG
48279789 AATAAATAATA
1 AATAAATAATA
48279800 AATAAATAAATA
1 AATAAAT-AATA
*
48279812 ACTAAATAACT-
1 AATAAATAA-TA
48279823 -A-AAATAATA
1 AATAAATAATA
48279832 AATAAA
1 AATAAA
48279838 ACACTTTGTA
Statistics
Matches: 31, Mismatches: 2, Indels: 10
0.72 0.05 0.23
Matches are distributed among these distances:
8 1 0.03
9 6 0.19
10 1 0.03
11 12 0.39
12 11 0.35
ACGTcount: A:0.71, C:0.04, G:0.00, T:0.24
Consensus pattern (11 bp):
AATAAATAATA
Found at i:48297342 original size:26 final size:26
Alignment explanation
Indices: 48297313--48297364 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
48297303 AGGGACCTCT
48297313 CACATAGACAATCCTGGAAGACTTCC
1 CACATAGACAATCCTGGAAGACTTCC
* * *
48297339 CACATAGACAGTTCTGGCAGACTTCC
1 CACATAGACAATCCTGGAAGACTTCC
48297365 ACCTAGATAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.21
Consensus pattern (26 bp):
CACATAGACAATCCTGGAAGACTTCC
Found at i:48297485 original size:26 final size:26
Alignment explanation
Indices: 48297456--48297575 Score: 105
Period size: 26 Copynumber: 4.6 Consensus size: 26
48297446 TTATTAAATG
48297456 GTCCTTGCAGACTTTCCCATTAGATA
1 GTCCTTGCAGACTTTCCCATTAGATA
* * * *
48297482 GTCCGTGCGGACCTTCCTATTAGATA
1 GTCCTTGCAGACTTTCCCATTAGATA
* * * * *
48297508 GTCCCTACAAACTTTCCCATCAGATG
1 GTCCTTGCAGACTTTCCCATTAGATA
** **
48297534 GTCCTTGTGGACTTTTTCATTAGATA
1 GTCCTTGCAGACTTTCCCATTAGATA
**
48297560 GTCCACGCAGACTTTC
1 GTCCTTGCAGACTTTC
48297576 AACATTTACA
Statistics
Matches: 68, Mismatches: 26, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
26 68 1.00
ACGTcount: A:0.22, C:0.28, G:0.17, T:0.33
Consensus pattern (26 bp):
GTCCTTGCAGACTTTCCCATTAGATA
Found at i:48297574 original size:52 final size:52
Alignment explanation
Indices: 48297447--48297575 Score: 127
Period size: 52 Copynumber: 2.5 Consensus size: 52
48297437 GGACTTCCCT
* * * *
48297447 TATTAAATGGTCCTTGCAGACTTTCCCATTAGATAGTCCGTGCGGACCTTCC
1 TATTAGATAGTCCCTGCAGACTTTCCCATCAGATAGTCCGTGCGGACCTTCC
* * * * * **
48297499 TATTAGATAGTCCCTACAAACTTTCCCATCAGATGGTCCTTGTGGA-CTTTT
1 TATTAGATAGTCCCTGCAGACTTTCCCATCAGATAGTCCGTGCGGACCTTCC
48297550 TCATTAGATAGTCCAC-GCAGACTTTC
1 T-ATTAGATAGTCC-CTGCAGACTTTC
48297576 AACATTTACA
Statistics
Matches: 62, Mismatches: 13, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
51 4 0.06
52 57 0.92
53 1 0.02
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (52 bp):
TATTAGATAGTCCCTGCAGACTTTCCCATCAGATAGTCCGTGCGGACCTTCC
Found at i:48303615 original size:22 final size:23
Alignment explanation
Indices: 48303569--48303615 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
48303559 AACATTGAAG
*
48303569 AATTTCGATTATAATATATAGGA
1 AATTTCGATTATAATATATACGA
48303592 AATTT-GATTATAAGTAT-TACGA
1 AATTTCGATTATAA-TATATACGA
48303614 AA
1 AA
48303616 ATGATGTCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 14 0.64
23 8 0.36
ACGTcount: A:0.45, C:0.04, G:0.13, T:0.38
Consensus pattern (23 bp):
AATTTCGATTATAATATATACGA
Found at i:48303617 original size:23 final size:23
Alignment explanation
Indices: 48303569--48303617 Score: 57
Period size: 23 Copynumber: 2.1 Consensus size: 23
48303559 AACATTGAAG
*
48303569 AATTTCGATTATAATATATAGGA
1 AATTTCGATTATAATATATAGAA
48303592 AATTT-GATTATAAGTAT-TACGAA
1 AATTTCGATTATAA-TATATA-GAA
48303615 AAT
1 AAT
48303618 GATGTCATGG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
22 10 0.43
23 13 0.57
ACGTcount: A:0.45, C:0.04, G:0.12, T:0.39
Consensus pattern (23 bp):
AATTTCGATTATAATATATAGAA
Found at i:48307384 original size:27 final size:27
Alignment explanation
Indices: 48307354--48307531 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
48307344 ATATTGAGCC
* * *
48307354 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
48307381 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
48307408 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
48307436 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
48307463 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
48307490 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
48307517 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
48307532 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:48307447 original size:55 final size:55
Alignment explanation
Indices: 48307354--48307531 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
48307344 ATATTGAGCC
* * *
48307354 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
48307408 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
48307463 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
48307517 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
48307532 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:48307493 original size:82 final size:81
Alignment explanation
Indices: 48307375--48307530 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
48307365 TGCTATACAA
* * *
48307375 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
48307440 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
48307457 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
48307521 CACTTAGTGC
65 CACTTAGTGC
48307531 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:48315448 original size:27 final size:27
Alignment explanation
Indices: 48315418--48315595 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
48315408 ATATTGAGCC
* * *
48315418 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
48315445 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
48315472 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
48315500 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
48315527 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
48315554 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
48315581 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
48315596 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:48315511 original size:55 final size:55
Alignment explanation
Indices: 48315418--48315595 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
48315408 ATATTGAGCC
* * *
48315418 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
48315472 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
48315527 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
48315581 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
48315596 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:48315557 original size:82 final size:81
Alignment explanation
Indices: 48315439--48315594 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
48315429 TGCTATACAA
* * *
48315439 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
48315504 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
48315521 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
48315585 CACTTAGTGC
65 CACTTAGTGC
48315595 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:48325522 original size:22 final size:22
Alignment explanation
Indices: 48325490--48325531 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
48325480 TATATAATTA
*
48325490 ATATTACTTGAATAGTTATGAG
1 ATATTACTTGAATAATTATGAG
*
48325512 ATATTAGTTGAATAATTATG
1 ATATTACTTGAATAATTATG
48325532 TCTCTTTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.38, C:0.02, G:0.17, T:0.43
Consensus pattern (22 bp):
ATATTACTTGAATAATTATGAG
Found at i:48325786 original size:127 final size:127
Alignment explanation
Indices: 48325623--48325876 Score: 490
Period size: 127 Copynumber: 2.0 Consensus size: 127
48325613 ATAGGAGCGA
*
48325623 GATCTCATTCAGAAGACATACATAAAATTCTCAGAAGGTCTTTCTGTCTTTCCTCCATCTTCTGC
1 GATCTCATTCAGAAGACATACATAAAATTCTCAGAAGGTCTTTCTGTCTTTCCTCCATATTCTGC
*
48325688 TATTATTAGATTGTTTTATAAAGATTTTTTATAGTAATTCTTTATAGAAATTGATTTGCTTG
66 TATTATTAGATTGTTTTATAAAGAATTTTTATAGTAATTCTTTATAGAAATTGATTTGCTTG
48325750 GATCTCATTCAGAAGACATACATAAAATTCTCAGAAGGTCTTTCTGTCTTTCCTCCATATTCTGC
1 GATCTCATTCAGAAGACATACATAAAATTCTCAGAAGGTCTTTCTGTCTTTCCTCCATATTCTGC
48325815 TATTATTAGATTGTTTTATAAAGAATTTTTATAGTAATTCTTTATAGAAATTGATTTGCTTG
66 TATTATTAGATTGTTTTATAAAGAATTTTTATAGTAATTCTTTATAGAAATTGATTTGCTTG
48325877 TTATGCTATG
Statistics
Matches: 125, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
127 125 1.00
ACGTcount: A:0.29, C:0.15, G:0.13, T:0.44
Consensus pattern (127 bp):
GATCTCATTCAGAAGACATACATAAAATTCTCAGAAGGTCTTTCTGTCTTTCCTCCATATTCTGC
TATTATTAGATTGTTTTATAAAGAATTTTTATAGTAATTCTTTATAGAAATTGATTTGCTTG
Found at i:48328001 original size:25 final size:25
Alignment explanation
Indices: 48327965--48328028 Score: 83
Period size: 25 Copynumber: 2.6 Consensus size: 25
48327955 AATCGATATA
* *
48327965 CTCACTCAAGCTGTAGATCAGTATG
1 CTCACACAAGCTGTAAATCAGTATG
* *
48327990 CTCTCACAAGCTATAAATCAGTATG
1 CTCACACAAGCTGTAAATCAGTATG
*
48328015 CTCACACGAGCTGT
1 CTCACACAAGCTGT
48328029 GGGTCGAAAC
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.27
Consensus pattern (25 bp):
CTCACACAAGCTGTAAATCAGTATG
Found at i:48330944 original size:27 final size:27
Alignment explanation
Indices: 48330907--48331114 Score: 213
Period size: 27 Copynumber: 7.7 Consensus size: 27
48330897 CTTAGGCTAA
*
48330907 AAAATTACCGAAATACCCTCGAAGGGT
1 AAAATTACCAAAATACCCTCGAAGGGT
*
48330934 AAAATTACCGAAATACCCTCGAAGGGT
1 AAAATTACCAAAATACCCTCGAAGGGT
* * * * *
48330961 AAAATTATCGAAATACCATCGAATGAT
1 AAAATTACCAAAATACCCTCGAAGGGT
*
48330988 AAAATTACCAAAATACCC-CCATAGGG-
1 AAAATTACCAAAATACCCTCGA-AGGGT
*
48331014 AAAATTTACTAAAATACCCTCGAAGGGT
1 AAAA-TTACCAAAATACCCTCGAAGGGT
* * * *
48331042 AAAATGACTAATATACCCTTCGCAGGGT
1 AAAATTACCAAAATACCC-TCGAAGGGT
* * *
48331070 AAAATGATCAAAATACCCCCGAAGGGT
1 AAAATTACCAAAATACCCTCGAAGGGT
* *
48331097 AAAATGACTAAAATACCC
1 AAAATTACCAAAATACCC
48331115 CCATATGGTA
Statistics
Matches: 154, Mismatches: 22, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
26 6 0.04
27 119 0.77
28 29 0.19
ACGTcount: A:0.44, C:0.21, G:0.15, T:0.20
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTCGAAGGGT
Found at i:48331111 original size:82 final size:82
Alignment explanation
Indices: 48330907--48331140 Score: 235
Period size: 82 Copynumber: 2.9 Consensus size: 82
48330897 CTTAGGCTAA
* * * ** * *
48330907 AAAATTACCGAAATACCCTCGAAGGGTAAAATTACCGAAATACCCTCGAAGGGTAAAATTATCGA
1 AAAATGACCAAAATACCCCCGAAGGGTAAAATTACTAAAATACCCTCGAAGGGTAAAATGA-CTA
*
48330972 A-ATA-CCATCGAATGAT
65 ATATACCCATCGAAGGAT
*
48330988 AAAATTACCAAAATACCCCC-ATAGGG-AAAATTTACTAAAATACCCTCGAAGGGTAAAATGACT
1 AAAATGACCAAAATACCCCCGA-AGGGTAAAA-TTACTAAAATACCCTCGAAGGGTAAAATGACT
* * *
48331051 AATATACCCTTCGCAGGGT
64 AATATACCCATCGAAGGAT
* * * * * *
48331070 AAAATGATCAAAATACCCCCGAAGGGTAAAATGACTAAAATACCC-CCATATGGTAAAATGATTG
1 AAAATGACCAAAATACCCCCGAAGGGTAAAATTACTAAAATACCCTCGA-AGGGTAAAATGACTA
48331134 ATATACC
65 ATATACC
48331141 TTAAGAGTTG
Statistics
Matches: 129, Mismatches: 17, Indels: 13
0.81 0.11 0.08
Matches are distributed among these distances:
80 8 0.06
81 54 0.42
82 62 0.48
83 5 0.04
ACGTcount: A:0.43, C:0.21, G:0.15, T:0.21
Consensus pattern (82 bp):
AAAATGACCAAAATACCCCCGAAGGGTAAAATTACTAAAATACCCTCGAAGGGTAAAATGACTAA
TATACCCATCGAAGGAT
Found at i:48331124 original size:27 final size:26
Alignment explanation
Indices: 48330987--48331130 Score: 132
Period size: 27 Copynumber: 5.3 Consensus size: 26
48330977 CATCGAATGA
* *
48330987 TAAAATTACCAAAATACCCCCATAGGG
1 TAAAATGACTAAAATACCCCCA-AGGG
* *
48331014 -AAAATTTACTAAAATACCCTCGAAGGG
1 TAAAA-TGACTAAAATACCC-CCAAGGG
*
48331041 TAAAATGACTAATATACCCTTCGC-AGGG
1 TAAAATGACTAAAATACCC--C-CAAGGG
48331069 TAAAATGA-TCAAAATACCCCCGAAGGG
1 TAAAATGACT-AAAATACCCCC-AAGGG
*
48331096 TAAAATGACTAAAATACCCCCATATGG
1 TAAAATGACTAAAATACCCCCA-AGGG
48331123 TAAAATGA
1 TAAAATGA
48331131 TTGATATACC
Statistics
Matches: 100, Mismatches: 7, Indels: 20
0.79 0.06 0.16
Matches are distributed among these distances:
25 1 0.01
26 6 0.06
27 64 0.64
28 29 0.29
ACGTcount: A:0.44, C:0.21, G:0.15, T:0.21
Consensus pattern (26 bp):
TAAAATGACTAAAATACCCCCAAGGG
Found at i:48331336 original size:26 final size:26
Alignment explanation
Indices: 48331307--48331380 Score: 85
Period size: 26 Copynumber: 2.8 Consensus size: 26
48331297 TTACCACAAA
*
48331307 TACTGTTACTGGCAACTTTGCTACGT
1 TACTGTTACTGGCAACTTTGCTACAT
* * * *
48331333 TACTGTTATTGGCAGCTCTGCTGCAT
1 TACTGTTACTGGCAACTTTGCTACAT
* *
48331359 TATTATTACTGGCAACTTTGCT
1 TACTGTTACTGGCAACTTTGCT
48331381 GCGATATTGG
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.19, C:0.22, G:0.19, T:0.41
Consensus pattern (26 bp):
TACTGTTACTGGCAACTTTGCTACAT
Found at i:48331388 original size:26 final size:26
Alignment explanation
Indices: 48331312--48331388 Score: 75
Period size: 26 Copynumber: 3.0 Consensus size: 26
48331302 ACAAATACTG
* * * *
48331312 TTACTGGCAACTTTGCTACGTTACTG
1 TTACTGGCAACTTTGCTGCGATATTA
* * *
48331338 TTATTGGCAGCTCTGCTGC-ATTATTA
1 TTACTGGCAACTTTGCTGCGA-TATTA
48331364 TTACTGGCAACTTTGCTGCGATATT
1 TTACTGGCAACTTTGCTGCGATATT
48331389 GGTGTGTTGG
Statistics
Matches: 39, Mismatches: 10, Indels: 4
0.74 0.19 0.08
Matches are distributed among these distances:
26 38 0.97
27 1 0.03
ACGTcount: A:0.19, C:0.21, G:0.19, T:0.40
Consensus pattern (26 bp):
TTACTGGCAACTTTGCTGCGATATTA
Found at i:48331551 original size:22 final size:24
Alignment explanation
Indices: 48331499--48331546 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
48331489 ATTGTTTACA
*
48331499 GTACTGGGCTAAAGCCCACATTGT
1 GTACTGAGCTAAAGCCCACATTGT
*
48331523 GTACTGAGCTAAGGCCCACATTGT
1 GTACTGAGCTAAAGCCCACATTGT
48331547 ACTGATACTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (24 bp):
GTACTGAGCTAAAGCCCACATTGT
Found at i:48334676 original size:37 final size:37
Alignment explanation
Indices: 48334626--48334704 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
48334616 TTATTACGAA
* * *
48334626 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
48334663 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
48334700 GTCTT
1 GTCTT
48334705 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:48334942 original size:47 final size:47
Alignment explanation
Indices: 48334824--48335194 Score: 679
Period size: 47 Copynumber: 7.9 Consensus size: 47
48334814 CCTATCACAT
*
48334824 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCAC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
48334871 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCAC
1 --ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
48334920 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCGTATCAC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
48334967 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCATTATCAC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
48335014 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
48335061 ATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
48335108 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
48335155 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
48335195 ATACTATCAT
Statistics
Matches: 316, Mismatches: 6, Indels: 2
0.98 0.02 0.01
Matches are distributed among these distances:
47 269 0.85
49 47 0.15
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (47 bp):
ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:48335038 original size:25 final size:25
Alignment explanation
Indices: 48334962--48335040 Score: 74
Period size: 25 Copynumber: 3.3 Consensus size: 25
48334952 ATTAGGCCGT
48334962 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
**** ***
48334987 ATCACAT-CGGCCA-TTAGGCATT-
1 ATCACATATATACACTTTCACATTC
48335009 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
48335034 ATCACAT
1 ATCACAT
48335041 CGGCCATTAG
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 8 0.22
25 14 0.38
ACGTcount: A:0.34, C:0.28, G:0.05, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:48342727 original size:27 final size:27
Alignment explanation
Indices: 48342687--48342934 Score: 259
Period size: 27 Copynumber: 9.2 Consensus size: 27
48342677 CTTGGGCTAA
* **
48342687 AAAATTACCGAAATACCCTCGAAGTTT
1 AAAATTACCAAAATACCCTCGAAGGGT
* * *
48342714 AAAATTATCAAAATACACTAGAAGGGT
1 AAAATTACCAAAATACCCTCGAAGGGT
* * *
48342741 AAACTTACCGAAATACCTTCGAAGGGT
1 AAAATTACCAAAATACCCTCGAAGGGT
* *
48342768 AAAATTACCGAAATATCCTCGAAGGGT
1 AAAATTACCAAAATACCCTCGAAGGGT
* * *
48342795 AAAATTATCGAAATACCC-CCATAGGGT
1 AAAATTACCAAAATACCCTCGA-AGGGT
*
48342822 AAAATTACCAAAATACCCTCGAAGGAT
1 AAAATTACCAAAATACCCTCGAAGGGT
*
48342849 AAAATGACCAAAATACTCCT-GAAGGGT
1 AAAATTACCAAAATAC-CCTCGAAGGGT
* *
48342876 AAAATGACCAAAATACCCTCGAAGGAT
1 AAAATTACCAAAATACCCTCGAAGGGT
* * *
48342903 AAAATGACTAAAATACCC-CCATAGGGT
1 AAAATTACCAAAATACCCTCGA-AGGGT
48342930 AAAAT
1 AAAAT
48342935 GACTGATATA
Statistics
Matches: 188, Mismatches: 28, Indels: 10
0.83 0.12 0.04
Matches are distributed among these distances:
26 7 0.04
27 176 0.94
28 5 0.03
ACGTcount: A:0.45, C:0.20, G:0.15, T:0.21
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTCGAAGGGT
Found at i:48344499 original size:17 final size:18
Alignment explanation
Indices: 48344466--48344506 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
48344456 TAAGGTACCA
48344466 TTTATATTTCTATTAGT-T
1 TTTA-ATTTCTATTAGTCT
48344484 TTTAATTT-TATCTAGTCT
1 TTTAATTTCTAT-TAGTCT
48344502 TTTAA
1 TTTAA
48344507 ATGAAATTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
16 3 0.14
17 8 0.38
18 10 0.48
ACGTcount: A:0.24, C:0.07, G:0.05, T:0.63
Consensus pattern (18 bp):
TTTAATTTCTATTAGTCT
Found at i:48345763 original size:17 final size:17
Alignment explanation
Indices: 48345743--48345804 Score: 54
Period size: 17 Copynumber: 3.4 Consensus size: 17
48345733 TTGAATGTTA
48345743 TGTGATTATATGAGTAT
1 TGTGATTATATGAGTAT
*
48345760 TGTGATATATGCTTGAATGT-T
1 TGTGAT-TAT--ATG-A-GTAT
48345781 ATGTGATTATATGAGTAT
1 -TGTGATTATATGAGTAT
48345799 TGTGAT
1 TGTGAT
48345805 ATAACCTTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 14
0.69 0.04 0.27
Matches are distributed among these distances:
17 14 0.39
18 5 0.14
19 2 0.06
20 2 0.06
21 5 0.14
22 8 0.22
ACGTcount: A:0.27, C:0.02, G:0.24, T:0.47
Consensus pattern (17 bp):
TGTGATTATATGAGTAT
Found at i:48345771 original size:39 final size:39
Alignment explanation
Indices: 48345716--48345851 Score: 218
Period size: 39 Copynumber: 3.5 Consensus size: 39
48345706 CATATTTTTA
*
48345716 AGTATTGTGATGTATGCTTGAATGTTATGTGATTATATG
1 AGTATTGTGATATATGCTTGAATGTTATGTGATTATATG
48345755 AGTATTGTGATATATGCTTGAATGTTATGTGATTATATG
1 AGTATTGTGATATATGCTTGAATGTTATGTGATTATATG
** *
48345794 AGTATTGTGATATAACCTTAAATGTTATGTGATTATATG
1 AGTATTGTGATATATGCTTGAATGTTATGTGATTATATG
* *
48345833 TGTAATGTGATATATGCTT
1 AGTATTGTGATATATGCTT
48345852 AAAACTGTAT
Statistics
Matches: 89, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 89 1.00
ACGTcount: A:0.29, C:0.04, G:0.22, T:0.46
Consensus pattern (39 bp):
AGTATTGTGATATATGCTTGAATGTTATGTGATTATATG
Found at i:48352094 original size:39 final size:39
Alignment explanation
Indices: 48352039--48352179 Score: 210
Period size: 39 Copynumber: 3.6 Consensus size: 39
48352029 AACATGTTTT
*
48352039 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
* * *
48352078 TGAGTATTGTGGTATATGCTTAAATTTTATATGATTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
* *
48352117 TGAGTATTGTGACATATCCTTAAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
* *
48352156 TGTGTAATGTGATATATGCTTAAA
1 TGAGTATTGTGATATATGCTTAAA
48352180 AATGAATATG
Statistics
Matches: 89, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 89 1.00
ACGTcount: A:0.30, C:0.04, G:0.20, T:0.45
Consensus pattern (39 bp):
TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
Found at i:48354740 original size:13 final size:13
Alignment explanation
Indices: 48354715--48354747 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
48354705 TTTGTTTATC
*
48354715 TTTA-TTTATTTA
1 TTTATTTTAGTTA
48354727 TTTATTTTAGTTA
1 TTTATTTTAGTTA
48354740 TTTATTTT
1 TTTATTTT
48354748 TAGTCCTCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (13 bp):
TTTATTTTAGTTA
Found at i:48354740 original size:17 final size:18
Alignment explanation
Indices: 48354704--48354746 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
48354694 TGTCTAATTC
* *
48354704 ATTTGTTTATCTTTATTT
1 ATTTATTTATCTTTAGTT
48354722 ATTTATTTAT-TTTAGTT
1 ATTTATTTATCTTTAGTT
48354739 ATTTATTT
1 ATTTATTT
48354747 TTAGTCCTCT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 14 0.61
18 9 0.39
ACGTcount: A:0.21, C:0.02, G:0.05, T:0.72
Consensus pattern (18 bp):
ATTTATTTATCTTTAGTT
Found at i:48355917 original size:57 final size:58
Alignment explanation
Indices: 48355830--48355943 Score: 167
Period size: 57 Copynumber: 2.0 Consensus size: 58
48355820 AGAAATGGTG
* * *
48355830 AAAATGGAGAAATAGGAAACATTTGGAAATGATTATGGTTTTCTCAAAAATGAAAATT
1 AAAATAGAGAAATACGAAACATTTGGAAATGAATATGGTTTTCTCAAAAATGAAAATT
* * *
48355888 AAAATAGAGAAAT-CGAATCATTTGGAAATGAATGTGGTTTTCTCCAAAATGAAAAT
1 AAAATAGAGAAATACGAAACATTTGGAAATGAATATGGTTTTCTCAAAAATGAAAAT
48355944 GACCTGAAAA
Statistics
Matches: 50, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
57 38 0.76
58 12 0.24
ACGTcount: A:0.46, C:0.07, G:0.18, T:0.29
Consensus pattern (58 bp):
AAAATAGAGAAATACGAAACATTTGGAAATGAATATGGTTTTCTCAAAAATGAAAATT
Found at i:48357364 original size:28 final size:28
Alignment explanation
Indices: 48357332--48357387 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
48357322 TTCATGCTTG
48357332 GTCTGTTAATTTATTTTTAAGATCCAAA
1 GTCTGTTAATTTATTTTTAAGATCCAAA
48357360 GTCTGTTAATTTATTTTTAAGATCCAAA
1 GTCTGTTAATTTATTTTTAAGATCCAAA
48357388 CTATCAATCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.46
Consensus pattern (28 bp):
GTCTGTTAATTTATTTTTAAGATCCAAA
Found at i:48359841 original size:16 final size:16
Alignment explanation
Indices: 48359820--48359865 Score: 67
Period size: 16 Copynumber: 2.9 Consensus size: 16
48359810 GAGGTCGAAC
48359820 TTCTCTAATTCAAATT
1 TTCTCTAATTCAAATT
*
48359836 TTCTCTAATTTAAATT
1 TTCTCTAATTCAAATT
48359852 TTCT-TGAATTCAAA
1 TTCTCT-AATTCAAA
48359866 GCTATTTTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
15 1 0.04
16 26 0.96
ACGTcount: A:0.33, C:0.15, G:0.02, T:0.50
Consensus pattern (16 bp):
TTCTCTAATTCAAATT
Found at i:48360776 original size:7 final size:7
Alignment explanation
Indices: 48360764--48360791 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
48360754 GTAAATAAAT
48360764 ATTATTA
1 ATTATTA
48360771 ATTATTA
1 ATTATTA
48360778 ATTATTA
1 ATTATTA
48360785 ATTATTA
1 ATTATTA
48360792 TTTAATTATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (7 bp):
ATTATTA
Found at i:48364140 original size:35 final size:34
Alignment explanation
Indices: 48364088--48364153 Score: 89
Period size: 35 Copynumber: 1.9 Consensus size: 34
48364078 CTATGAAAAT
48364088 TTTAACTTTAAAATTAAATATAA-AAATTAATGAA
1 TTTAACTTTAAAATTAAA-ATAATAAATTAATGAA
* *
48364122 TTTAATTTTAGAATTTAAAATAATAAATTAAT
1 TTTAACTTTA-AAATTAAAATAATAAATTAAT
48364154 AACACAATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
34 13 0.46
35 15 0.54
ACGTcount: A:0.53, C:0.02, G:0.03, T:0.42
Consensus pattern (34 bp):
TTTAACTTTAAAATTAAAATAATAAATTAATGAA
Found at i:48364299 original size:19 final size:19
Alignment explanation
Indices: 48364277--48364342 Score: 60
Period size: 19 Copynumber: 3.3 Consensus size: 19
48364267 ACAGTAACGA
*
48364277 AAAATTAAACACCACACAT
1 AAAATTAAACACCAAACAT
* * *
48364296 AAAATTACACAGACAGTAACAA
1 AAAATTAAACA-CCA--AACAT
*
48364318 AAAATTAAACACCATACAT
1 AAAATTAAACACCAAACAT
48364337 AAAATT
1 AAAATT
48364343 TATCAAATTA
Statistics
Matches: 36, Mismatches: 8, Indels: 6
0.72 0.16 0.12
Matches are distributed among these distances:
19 19 0.53
20 2 0.06
21 2 0.06
22 13 0.36
ACGTcount: A:0.59, C:0.20, G:0.03, T:0.18
Consensus pattern (19 bp):
AAAATTAAACACCAAACAT
Found at i:48364322 original size:22 final size:22
Alignment explanation
Indices: 48364261--48364324 Score: 62
Period size: 22 Copynumber: 3.0 Consensus size: 22
48364251 AAAAATTAAA
*
48364261 ACACAGACAGTAACGAAAAATT
1 ACACAGACAGTAACAAAAAATT
* * * *
48364283 AAACA-CCA--CACATAAAATT
1 ACACAGACAGTAACAAAAAATT
48364302 ACACAGACAGTAACAAAAAATT
1 ACACAGACAGTAACAAAAAATT
48364324 A
1 A
48364325 AACACCATAC
Statistics
Matches: 30, Mismatches: 9, Indels: 6
0.67 0.20 0.13
Matches are distributed among these distances:
19 12 0.40
20 2 0.07
21 2 0.07
22 14 0.47
ACGTcount: A:0.58, C:0.20, G:0.08, T:0.14
Consensus pattern (22 bp):
ACACAGACAGTAACAAAAAATT
Found at i:48364362 original size:41 final size:41
Alignment explanation
Indices: 48364261--48364342 Score: 146
Period size: 41 Copynumber: 2.0 Consensus size: 41
48364251 AAAAATTAAA
*
48364261 ACACAGACAGTAACGAAAAATTAAACACCACACATAAAATT
1 ACACAGACAGTAACAAAAAATTAAACACCACACATAAAATT
*
48364302 ACACAGACAGTAACAAAAAATTAAACACCATACATAAAATT
1 ACACAGACAGTAACAAAAAATTAAACACCACACATAAAATT
48364343 TATCAAATTA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.57, C:0.21, G:0.06, T:0.16
Consensus pattern (41 bp):
ACACAGACAGTAACAAAAAATTAAACACCACACATAAAATT
Found at i:48364459 original size:9 final size:9
Alignment explanation
Indices: 48364445--48364475 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
48364435 GTTAAACGAA
48364445 TCGAGTTAT
1 TCGAGTTAT
*
48364454 TCGAGTTAA
1 TCGAGTTAT
48364463 TCGAGTTAT
1 TCGAGTTAT
48364472 TCGA
1 TCGA
48364476 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:48364546 original size:9 final size:9
Alignment explanation
Indices: 48364529--48364565 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
48364519 TGAGTTTTCG
48364529 AATTCGAAT
1 AATTCGAAT
*
48364538 AACTCGAAT
1 AATTCGAAT
48364547 AATTCGAAT
1 AATTCGAAT
48364556 AATTCGAAT
1 AATTCGAAT
48364565 A
1 A
48364566 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:48364931 original size:18 final size:17
Alignment explanation
Indices: 48364905--48364962 Score: 55
Period size: 18 Copynumber: 3.2 Consensus size: 17
48364895 ACTCCCCCTA
*
48364905 TTTACTTTCCCTCAAACT
1 TTTATTTTCCC-CAAACT
*
48364923 TTTATTTT-CCAAAACTT
1 TTTATTTTCCCCAAAC-T
48364940 TTTATTTTTCCCCTAAACT
1 TTTA-TTTTCCCC-AAACT
48364959 TTTA
1 TTTA
48364963 CTTCTCACCC
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
16 4 0.12
17 7 0.21
18 11 0.33
19 7 0.21
20 4 0.12
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (17 bp):
TTTATTTTCCCCAAACT
Found at i:48365255 original size:18 final size:18
Alignment explanation
Indices: 48365234--48365268 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
48365224 AAAAATCATA
48365234 TTTTTACATT-TAATATAT
1 TTTTTA-ATTCTAATATAT
48365252 TTTTTAATTCTAATATA
1 TTTTTAATTCTAATATA
48365269 CATAGTGACA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 3 0.19
18 13 0.81
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (18 bp):
TTTTTAATTCTAATATAT
Found at i:48365968 original size:23 final size:23
Alignment explanation
Indices: 48365918--48365969 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 23
48365908 GTTAGGTGTC
* *
48365918 AGTATAAAGACATGTCAGATATG
1 AGTATGAAGACATGTCAGAGATG
* * *
48365941 GGTATGAAGGCATGTCTGAGATG
1 AGTATGAAGACATGTCAGAGATG
48365964 AGTATG
1 AGTATG
48365970 TTCAATTGCA
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.08, G:0.31, T:0.27
Consensus pattern (23 bp):
AGTATGAAGACATGTCAGAGATG
Found at i:48370394 original size:145 final size:146
Alignment explanation
Indices: 48370185--48370533 Score: 449
Period size: 145 Copynumber: 2.4 Consensus size: 146
48370175 GAGGGAATAT
* * **
48370185 TATAAAATGGCGCTATTTTTTTAAAAGT--AATT-TTTTTTGTGGCGTTTTTTATAAAAACGTCG
1 TATAAAATGGCGCTATTTTTTTAAAA-TAAAATTATTTTTTGTGGCGTTTTTAAAAAAAACACCG
* * * * *
48370247 CTATTGTTTATCTATTGCGGCGTTTTTA-ATAAAACGTCACAAAAAATTATTTTATTTGGAATAA
65 CTATTGCTTATCTATTGCGGCATTTTTATA-AAAACGCCACAAAAAATTACTTTATTTGAAATAA
* *
48370311 AACGACATTGTTTTGTTA
129 AACGACAATGTTTTGCTA
48370329 TATAAAATGGCGCTA-TTTTTTAAAATAAAATTATTTTTTGTGGCGTTTTTAAAAAAAACACCGC
1 TATAAAATGGCGCTATTTTTTTAAAATAAAATTATTTTTTGTGGCGTTTTTAAAAAAAACACCGC
* * *
48370393 TATTGCTTATCTTTTGCGGCATTTTTATGAAAAACGCCGCAACAAATTACTTTATTTGAAATAAA
66 TATTGCTTATCTATTGCGGCATTTTTAT-AAAAACGCCACAAAAAATTACTTTATTTGAAATAAA
48370458 ACGACAATGTTTTGCTA
130 ACGACAATGTTTTGCTA
* * * *
48370475 TGCTAAAA-GGACGCTATTTTTTTAAAGTAAAATTATTTTTTGTGGCTTTTTTATAAAAA
1 T-ATAAAATGG-CGCTATTTTTTTAAAATAAAATTATTTTTTGTGGCGTTTTTAAAAAAA
48370534 CGCCGCAAAA
Statistics
Matches: 179, Mismatches: 18, Indels: 12
0.86 0.09 0.06
Matches are distributed among these distances:
142 1 0.01
143 10 0.06
144 19 0.11
145 51 0.28
146 48 0.27
147 11 0.06
148 39 0.22
ACGTcount: A:0.33, C:0.11, G:0.14, T:0.42
Consensus pattern (146 bp):
TATAAAATGGCGCTATTTTTTTAAAATAAAATTATTTTTTGTGGCGTTTTTAAAAAAAACACCGC
TATTGCTTATCTATTGCGGCATTTTTATAAAAACGCCACAAAAAATTACTTTATTTGAAATAAAA
CGACAATGTTTTGCTA
Found at i:48371248 original size:18 final size:18
Alignment explanation
Indices: 48371225--48371260 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
48371215 GCTAAAGCTC
48371225 GCATATTTTATAATTTTT
1 GCATATTTTATAATTTTT
48371243 GCATATTTTATAATTTTT
1 GCATATTTTATAATTTTT
48371261 TATATTCAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.06, G:0.06, T:0.61
Consensus pattern (18 bp):
GCATATTTTATAATTTTT
Found at i:48372079 original size:41 final size:40
Alignment explanation
Indices: 48372022--48372306 Score: 311
Period size: 41 Copynumber: 7.0 Consensus size: 40
48372012 ATAAAAAAGG
* *
48372022 GCATTAGCGGCCCTTCTTCAAAAATGCCGCTAAAGGGCCGA
1 GCATTAGCGGCGCTT-TTCAAAAATGCCGCTAAAGGCCCGA
*
48372063 GCATTAGCGGCGCTTCTTCAAAAA-GCCGCTAAAAGGCCCCA
1 GCATTAGCGGCGCTT-TTCAAAAATGCCGCT-AAAGGCCCGA
* * *
48372104 GCATTAGCGGCGCTTTACCAAAAACGTCGCTAAAGGCCCGA
1 GCATTAGCGGCGCTTT-TCAAAAATGCCGCTAAAGGCCCGA
* * * * *
48372145 GCATTAGCGGCACTTTATAAAAAAAGTCGCTAAAGACCCGA
1 GCATTAGCGGCGCTTT-TCAAAAATGCCGCTAAAGGCCCGA
* * * *
48372186 GCATTAGCGGTGCTTTACCAAAAACGCCGCTAAAGACCCGA
1 GCATTAGCGGCGCTTT-TCAAAAATGCCGCTAAAGGCCCGA
* **
48372227 GCATTAGCGACGCTTTTTTTAAAATGCCGCTAAAGGCCCGA
1 GCATTAGCGGCGC-TTTTCAAAAATGCCGCTAAAGGCCCGA
* *
48372268 GCATTAGCAGCACTTTTTCAAAAATGCCGCTAAAGGCCC
1 GCATTAGCGGCGC-TTTTCAAAAATGCCGCTAAAGGCCC
48372307 CAAAAACTCA
Statistics
Matches: 211, Mismatches: 29, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
40 7 0.03
41 196 0.93
42 8 0.04
ACGTcount: A:0.31, C:0.28, G:0.22, T:0.20
Consensus pattern (40 bp):
GCATTAGCGGCGCTTTTCAAAAATGCCGCTAAAGGCCCGA
Found at i:48372460 original size:40 final size:39
Alignment explanation
Indices: 48372343--48372470 Score: 114
Period size: 40 Copynumber: 3.2 Consensus size: 39
48372333 GGCTTTTTGT
* *
48372343 GGCGTTTTACAAAAAACGCCGCTAATGCTT-ATTTTTAGC
1 GGCGTTTT-TAAAAAGCGCCGCTAATGCTTGATTTTTAGC
** * ** * **
48372382 AACGTTTTCCAAAAAGCGCCGCTGGTGCTCGACCTTTAGC
1 GGCGTTTT-TAAAAAGCGCCGCTAATGCTTGATTTTTAGC
* *
48372422 GGCGTTTTTATAAAAGCGCTGCTAATGCTTGATTTTTAGT
1 GGCGTTTTTA-AAAAGCGCCGCTAATGCTTGATTTTTAGC
48372462 GGCGTTTTT
1 GGCGTTTTT
48372471 TCCCAAACGC
Statistics
Matches: 68, Mismatches: 19, Indels: 3
0.76 0.21 0.03
Matches are distributed among these distances:
39 24 0.35
40 44 0.65
ACGTcount: A:0.23, C:0.20, G:0.22, T:0.35
Consensus pattern (39 bp):
GGCGTTTTTAAAAAGCGCCGCTAATGCTTGATTTTTAGC
Found at i:48374170 original size:255 final size:251
Alignment explanation
Indices: 48373710--48374220 Score: 782
Period size: 255 Copynumber: 2.0 Consensus size: 251
48373700 TTAAATGTGA
48373710 AAAATCTACTCGTAAATAGTGATTAAACATGCATTAGTTAATGGACGAAAAACTAATAGAGTAGA
1 AAAATCTACTCGTAAATAGTGATTAAACATGCATTAGTTAATGGACGAAAAACTAATAGAGTAGA
* *
48373775 ATCAAACTCAATTTATTTGTAATAGTAATTACAGATAGATATGATAAAAAAATTGAAATAGATTG
66 ATCAAACTCAATTTATTTGTAATAGTAAATACAGATAGATATGATAAAAAAATTGAAACAGATTG
**
48373840 GTTTTCATTCGATCGGATTTGATAGAGTTGGAATTTTGTTTTTTAAAATTAAGTTTGAAATGGAG
131 GTTTTCATTCGATCGGATTTGATAGAGTTGGAATTTTGTTTTAAAAAATTAAGTTTGAAATGGAG
* *
48373905 GAAGTATTTTTTTTAAAAAAAATCGAGTCTAAACTCGTTCTACCTATTTGAAATATTTAC
196 GAAGTATTTTTTTT----AAAATCGAGTCTAAACTCATTCTACCCATTTGAAATATTTAC
* *
48373965 AAAATCTACTTGTAAATAGTGATTAAACTTGCATTAGTTAATGGACGAACAAA-TAATAGAGTAG
1 AAAATCTACTCGTAAATAGTGATTAAACATGCATTAGTTAATGGACGAA-AAACTAATAGAGTAG
48374029 AATCAAACTCAATTTATTTGTAATAGTAAATACCA-ATAGATATGATAAAAAAATTGAAACAGAT
65 AATCAAACTCAATTTATTTGTAATAGTAAATA-CAGATAGATATGATAAAAAAATTGAAACAGAT
* *
48374093 TGG-TTTCATTCGATTGGATTTGTTAGAGTT-GAATTTT-TTTTAAAAAAAATTAAGTTTGAAA-
129 TGGTTTTCATTCGATCGGATTTGATAGAGTTGGAATTTTGTTTT--AAAAAATTAAGTTTGAAAT
* *
48374154 GGAAGGAAGTTATTTTTTTTTAAATCGAGTCTAAACTCATTCTACCCGTTTGAAATATTTAC
192 GG-AGGAAG-TATTTTTTTTAAAATCGAGTCTAAACTCATTCTACCCATTTGAAATATTTAC
48374216 AAAAT
1 AAAAT
48374221 TATCTTCTCT
Statistics
Matches: 238, Mismatches: 12, Indels: 16
0.89 0.05 0.06
Matches are distributed among these distances:
251 43 0.18
252 4 0.02
253 9 0.04
254 47 0.20
255 130 0.55
256 5 0.02
ACGTcount: A:0.40, C:0.09, G:0.15, T:0.36
Consensus pattern (251 bp):
AAAATCTACTCGTAAATAGTGATTAAACATGCATTAGTTAATGGACGAAAAACTAATAGAGTAGA
ATCAAACTCAATTTATTTGTAATAGTAAATACAGATAGATATGATAAAAAAATTGAAACAGATTG
GTTTTCATTCGATCGGATTTGATAGAGTTGGAATTTTGTTTTAAAAAATTAAGTTTGAAATGGAG
GAAGTATTTTTTTTAAAATCGAGTCTAAACTCATTCTACCCATTTGAAATATTTAC
Found at i:48376712 original size:21 final size:21
Alignment explanation
Indices: 48376686--48376746 Score: 77
Period size: 21 Copynumber: 2.9 Consensus size: 21
48376676 TTAAAAACAG
*
48376686 CTGTGGCGGTGAGATTAGTTA
1 CTGTGGCGGTGAGATTAGATA
*
48376707 CTGTGGCGGTGAGATTGGATA
1 CTGTGGCGGTGAGATTAGATA
* **
48376728 CTGTAGCAATGAGATTAGA
1 CTGTGGCGGTGAGATTAGA
48376747 AACAATTGTG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.25, C:0.10, G:0.36, T:0.30
Consensus pattern (21 bp):
CTGTGGCGGTGAGATTAGATA
Found at i:48385055 original size:30 final size:30
Alignment explanation
Indices: 48385014--48385074 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
48385004 CTACTTCGGT
*
48385014 TGGTAGGGACTATCGCACCTCAAGCCAAAC
1 TGGTAGGGACTACCGCACCTCAAGCCAAAC
*
48385044 TGGTAGTGACTACCGCACCTCAAGCCAAAC
1 TGGTAGGGACTACCGCACCTCAAGCCAAAC
48385074 T
1 T
48385075 CGCTTACTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.30, C:0.31, G:0.21, T:0.18
Consensus pattern (30 bp):
TGGTAGGGACTACCGCACCTCAAGCCAAAC
Found at i:48387239 original size:39 final size:39
Alignment explanation
Indices: 48387189--48387284 Score: 165
Period size: 39 Copynumber: 2.5 Consensus size: 39
48387179 GGAGTTGTAA
* *
48387189 GTGACTATTCATCTACATCACTTCAGTGCTATAGGAGTT
1 GTGACTATTCATCTACATCACTTAAATGCTATAGGAGTT
*
48387228 GTGACTATTCATCTTCATCACTTAAATGCTATAGGAGTT
1 GTGACTATTCATCTACATCACTTAAATGCTATAGGAGTT
48387267 GTGACTATTCATCTACAT
1 GTGACTATTCATCTACAT
48387285 GCATGTGTGT
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 53 1.00
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.38
Consensus pattern (39 bp):
GTGACTATTCATCTACATCACTTAAATGCTATAGGAGTT
Found at i:48387318 original size:16 final size:16
Alignment explanation
Indices: 48387297--48387351 Score: 62
Period size: 16 Copynumber: 3.4 Consensus size: 16
48387287 ATGTGTGTAA
48387297 CTCTTCATCTTCAAGT
1 CTCTTCATCTTCAAGT
48387313 CTCTTCA-CATTTCTAA--
1 CTCTTCATC--TTC-AAGT
48387329 CTCTTCATCTTCAAGT
1 CTCTTCATCTTCAAGT
48387345 CTCTTCA
1 CTCTTCA
48387352 CATACTTAGA
Statistics
Matches: 33, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
14 2 0.06
15 4 0.12
16 21 0.64
17 4 0.12
18 2 0.06
ACGTcount: A:0.20, C:0.33, G:0.04, T:0.44
Consensus pattern (16 bp):
CTCTTCATCTTCAAGT
Found at i:48387335 original size:32 final size:32
Alignment explanation
Indices: 48387294--48387354 Score: 122
Period size: 32 Copynumber: 1.9 Consensus size: 32
48387284 TGCATGTGTG
48387294 TAACTCTTCATCTTCAAGTCTCTTCACATTTC
1 TAACTCTTCATCTTCAAGTCTCTTCACATTTC
48387326 TAACTCTTCATCTTCAAGTCTCTTCACAT
1 TAACTCTTCATCTTCAAGTCTCTTCACAT
48387355 ACTTAGAAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.23, C:0.31, G:0.03, T:0.43
Consensus pattern (32 bp):
TAACTCTTCATCTTCAAGTCTCTTCACATTTC
Found at i:48391683 original size:43 final size:41
Alignment explanation
Indices: 48391630--48391739 Score: 120
Period size: 39 Copynumber: 2.7 Consensus size: 41
48391620 CTTCATCACA
* * *
48391630 TATAAGAGTTGTAAGTGACTATTCATCTACATCACTTCAGTGC
1 TATAGGAGTTGT--GTGACTATTCATCTACATCACTTAAATGC
* *
48391673 TATAGGAG-T-TGTGACTATTTATCTTCATCACTTAAATGC
1 TATAGGAGTTGTGTGACTATTCATCTACATCACTTAAATGC
*
48391712 TATAGGAG-T-TGTGAGTATTCATCTACAT
1 TATAGGAGTTGTGTGACTATTCATCTACAT
48391740 GCATGTGTGT
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
39 50 0.85
41 1 0.02
42 1 0.02
43 7 0.12
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.38
Consensus pattern (41 bp):
TATAGGAGTTGTGTGACTATTCATCTACATCACTTAAATGC
Found at i:48391689 original size:39 final size:39
Alignment explanation
Indices: 48391644--48391739 Score: 147
Period size: 39 Copynumber: 2.5 Consensus size: 39
48391634 AGAGTTGTAA
* *
48391644 GTGACTATTCATCTACATCACTTCAGTGCTATAGGAGTT
1 GTGACTATTCATCTACATCACTTAAATGCTATAGGAGTT
* *
48391683 GTGACTATTTATCTTCATCACTTAAATGCTATAGGAGTT
1 GTGACTATTCATCTACATCACTTAAATGCTATAGGAGTT
*
48391722 GTGAGTATTCATCTACAT
1 GTGACTATTCATCTACAT
48391740 GCATGTGTGT
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 50 1.00
ACGTcount: A:0.27, C:0.18, G:0.17, T:0.39
Consensus pattern (39 bp):
GTGACTATTCATCTACATCACTTAAATGCTATAGGAGTT
Found at i:48391773 original size:16 final size:16
Alignment explanation
Indices: 48391752--48391806 Score: 53
Period size: 16 Copynumber: 3.4 Consensus size: 16
48391742 ATGTGTGTAA
48391752 CTCTTCATCTTCAAGT
1 CTCTTCATCTTCAAGT
48391768 CTCTTCA-CATTTCTAA--
1 CTCTTCATC--TTC-AAGT
*
48391784 CTCTTCATTTTCAAGT
1 CTCTTCATCTTCAAGT
48391800 CTCTTCA
1 CTCTTCA
48391807 CATACCTAGA
Statistics
Matches: 32, Mismatches: 1, Indels: 12
0.71 0.02 0.27
Matches are distributed among these distances:
14 2 0.06
15 4 0.12
16 21 0.66
17 3 0.09
18 2 0.06
ACGTcount: A:0.20, C:0.31, G:0.04, T:0.45
Consensus pattern (16 bp):
CTCTTCATCTTCAAGT
Found at i:48391790 original size:32 final size:32
Alignment explanation
Indices: 48391749--48391809 Score: 113
Period size: 32 Copynumber: 1.9 Consensus size: 32
48391739 TGCATGTGTG
48391749 TAACTCTTCATCTTCAAGTCTCTTCACATTTC
1 TAACTCTTCATCTTCAAGTCTCTTCACATTTC
*
48391781 TAACTCTTCATTTTCAAGTCTCTTCACAT
1 TAACTCTTCATCTTCAAGTCTCTTCACAT
48391810 ACCTAGAAAC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.23, C:0.30, G:0.03, T:0.44
Consensus pattern (32 bp):
TAACTCTTCATCTTCAAGTCTCTTCACATTTC
Found at i:48393525 original size:20 final size:20
Alignment explanation
Indices: 48393463--48393542 Score: 88
Period size: 20 Copynumber: 3.9 Consensus size: 20
48393453 ACTTTCAGGC
* * * *
48393463 TATGACTCAACATATGTTGC
1 TATGGCTCAACATAGGCTGT
*
48393483 TATGGCTCAACACAAGAGCTGT
1 TATGGCTCAACA-TAG-GCTGT
48393505 TATGGCTCAACATAGGCTGT
1 TATGGCTCAACATAGGCTGT
*
48393525 TATGGCTCAACACAGGCT
1 TATGGCTCAACATAGGCT
48393543 ACGTGTTGTG
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
20 33 0.65
21 3 0.06
22 15 0.29
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.28
Consensus pattern (20 bp):
TATGGCTCAACATAGGCTGT
Found at i:48398645 original size:26 final size:25
Alignment explanation
Indices: 48398597--48398648 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
48398587 CATGTTTTCT
* *
48398597 TCTAAATCTAACATAAAATTAAAAA
1 TCTAAATCTAAAATAAAACTAAAAA
*
48398622 TCTAAATCCTAAAATATAACTAAAAA
1 TCTAAAT-CTAAAATAAAACTAAAAA
48398648 T
1 T
48398649 AAAAACAACA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.58, C:0.13, G:0.00, T:0.29
Consensus pattern (25 bp):
TCTAAATCTAAAATAAAACTAAAAA
Found at i:48400277 original size:33 final size:33
Alignment explanation
Indices: 48400238--48400301 Score: 110
Period size: 33 Copynumber: 1.9 Consensus size: 33
48400228 TCCGCACAGA
48400238 AGAGATAGTCCACTAGGACAGTAAACACAGAAT
1 AGAGATAGTCCACTAGGACAGTAAACACAGAAT
* *
48400271 AGAGATAGTCCATTGGGACAGTAAACACAGA
1 AGAGATAGTCCACTAGGACAGTAAACACAGA
48400302 GCTAGTCTAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.44, C:0.17, G:0.23, T:0.16
Consensus pattern (33 bp):
AGAGATAGTCCACTAGGACAGTAAACACAGAAT
Found at i:48408242 original size:23 final size:23
Alignment explanation
Indices: 48408216--48408266 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
48408206 ACCTACTTTC
* *
48408216 TTACTGTAATAATTTTCGGGGTA
1 TTACAGTAATAATTTTCGGGATA
*
48408239 TTACAGTAGTAATTTTCGGGATA
1 TTACAGTAATAATTTTCGGGATA
48408262 TTACA
1 TTACA
48408267 TCGTTGGTGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.41
Consensus pattern (23 bp):
TTACAGTAATAATTTTCGGGATA
Found at i:48418906 original size:20 final size:20
Alignment explanation
Indices: 48418881--48418918 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
48418871 CGGGTGTGAC
*
48418881 ACTATGGCTTAACATAGGCT
1 ACTATGGCTCAACATAGGCT
48418901 ACTATGGCTCAACATAGG
1 ACTATGGCTCAACATAGG
48418919 AATGTCCCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (20 bp):
ACTATGGCTCAACATAGGCT
Found at i:48427496 original size:18 final size:18
Alignment explanation
Indices: 48427457--48427522 Score: 55
Period size: 20 Copynumber: 3.4 Consensus size: 18
48427447 AATATTTGAA
48427457 AAAAAAG-AGAAAAGAAAGG
1 AAAAAAGAAGAAAAG-AA-G
48427476 AAAAGAAGAA-AAAAGAAG
1 AAAA-AAGAAGAAAAGAAG
*
48427494 AAAGAAAGAAAGAAGAAAAAG
1 AAA-AAAG-AAGAA-AAGAAG
48427515 AAAAAAGA
1 AAAAAAGA
48427523 GAGGCCAAGG
Statistics
Matches: 40, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
18 7 0.17
19 10 0.25
20 14 0.35
21 9 0.22
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (18 bp):
AAAAAAGAAGAAAAGAAG
Found at i:48427505 original size:31 final size:30
Alignment explanation
Indices: 48427454--48427522 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 30
48427444 AAAAATATTT
* *
48427454 GAAAAAA-AAGAGAAAAGAAAGGAA-AAGAA
1 GAAAAAAGAAGAAAAAAGAAA-GAAGAAAAA
48427483 GAAAAAAGAAGAAAGAAAGAAAGAAGAAAAA
1 GAAAAAAGAAGAAA-AAAGAAAGAAGAAAAA
48427514 GAAAAAAGA
1 GAAAAAAGA
48427523 GAGGCCAAGG
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
29 7 0.20
30 8 0.23
31 20 0.57
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (30 bp):
GAAAAAAGAAGAAAAAAGAAAGAAGAAAAA
Found at i:48429238 original size:3 final size:3
Alignment explanation
Indices: 48429230--48429293 Score: 76
Period size: 3 Copynumber: 20.7 Consensus size: 3
48429220 ATAATCAAAT
* *
48429230 ATA ATA ATA ACA ATA ATAA ATA GTA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA
48429276 ATA GCA-A ATA ATA ATA AT
1 ATA --ATA ATA ATA ATA AT
48429294 TAAGTGATTA
Statistics
Matches: 53, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
2 1 0.02
3 47 0.89
4 4 0.08
5 1 0.02
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:48429245 original size:22 final size:22
Alignment explanation
Indices: 48429220--48429278 Score: 77
Period size: 22 Copynumber: 2.7 Consensus size: 22
48429210 ATAGCTAAAT
48429220 ATAATCAAATA-TAATAATAACA
1 ATAAT-AAATAGTAATAATAACA
*
48429242 ATAATAAATAGTAATAATAATA
1 ATAATAAATAGTAATAATAACA
*
48429264 ATAAT-AATAATAATA
1 ATAATAAATAGTAATA
48429279 GCAAATAATA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
21 14 0.41
22 20 0.59
ACGTcount: A:0.64, C:0.03, G:0.02, T:0.31
Consensus pattern (22 bp):
ATAATAAATAGTAATAATAACA
Found at i:48429272 original size:28 final size:28
Alignment explanation
Indices: 48429225--48429293 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
48429215 TAAATATAAT
48429225 CAAAT-ATAATAATAACAATAATAAATAG
1 CAAATAATAATAATAACAATAAT-AATAG
* *
48429253 -TAATAATAATAATAATAATAATAATAG
1 CAAATAATAATAATAACAATAATAATAG
48429280 CAAATAATAATAAT
1 CAAATAATAATAAT
48429294 TAAGTGATTA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
27 8 0.22
28 28 0.78
ACGTcount: A:0.64, C:0.04, G:0.03, T:0.29
Consensus pattern (28 bp):
CAAATAATAATAATAACAATAATAATAG
Found at i:48431485 original size:45 final size:45
Alignment explanation
Indices: 48431388--48431478 Score: 155
Period size: 45 Copynumber: 2.0 Consensus size: 45
48431378 AGAACAGATC
* * *
48431388 ACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACAGTGGAGCAG
1 ACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAA
48431433 ACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAA
1 ACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAA
48431478 A
1 A
48431479 TCGAAGACAC
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.30, C:0.23, G:0.24, T:0.23
Consensus pattern (45 bp):
ACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAA
Found at i:48440968 original size:15 final size:16
Alignment explanation
Indices: 48440948--48440980 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
48440938 GACTATTAGT
*
48440948 TTTTTCTATTAA-TCA
1 TTTTTCTAATAATTCA
48440963 TTTTTCTAATAATTCA
1 TTTTTCTAATAATTCA
48440979 TT
1 TT
48440981 AATTTGTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.27, C:0.12, G:0.00, T:0.61
Consensus pattern (16 bp):
TTTTTCTAATAATTCA
Found at i:48448339 original size:26 final size:26
Alignment explanation
Indices: 48448310--48448367 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
48448300 CCCTATATAT
48448310 GGCTCTTCATGAGCTTCCCGATTAAA
1 GGCTCTTCATGAGCTTCCCGATTAAA
** * *
48448336 GGCTCTTTGTGAGCTTCCTGATTAAT
1 GGCTCTTCATGAGCTTCCCGATTAAA
48448362 GGCTCT
1 GGCTCT
48448368 CTGGAGCTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.36
Consensus pattern (26 bp):
GGCTCTTCATGAGCTTCCCGATTAAA
Found at i:48448379 original size:26 final size:26
Alignment explanation
Indices: 48448319--48448376 Score: 82
Period size: 26 Copynumber: 2.3 Consensus size: 26
48448309 TGGCTCTTCA
*
48448319 TGAGCTTCCCGATTAAAGGCTCTTTG
1 TGAGCTTCCCGATTAAAGGCTCTCTG
* *
48448345 TGAGCTTCCTGATTAATGGCTCTCTG
1 TGAGCTTCCCGATTAAAGGCTCTCTG
48448371 -GAGCTT
1 TGAGCTT
48448377 TCCAATATAG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
25 6 0.21
26 23 0.79
ACGTcount: A:0.17, C:0.22, G:0.24, T:0.36
Consensus pattern (26 bp):
TGAGCTTCCCGATTAAAGGCTCTCTG
Found at i:48448425 original size:25 final size:25
Alignment explanation
Indices: 48448397--48448448 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
48448387 CTCGCTTGAA
48448397 CTTCCCGA-TATATGGCTATCCGGAG
1 CTTCCCGATTA-ATGGCTATCCGGAG
* *
48448422 CTTCCCGATTAATGGCTTTTCGGAG
1 CTTCCCGATTAATGGCTATCCGGAG
48448447 CT
1 CT
48448449 ACCTGTTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 22 0.92
26 2 0.08
ACGTcount: A:0.17, C:0.27, G:0.23, T:0.33
Consensus pattern (25 bp):
CTTCCCGATTAATGGCTATCCGGAG
Found at i:48448573 original size:25 final size:24
Alignment explanation
Indices: 48448494--48448556 Score: 90
Period size: 25 Copynumber: 2.5 Consensus size: 24
48448484 GCTCTTGTGG
48448494 GCTTCTCGTTATACAGCCCAGATAA
1 GCTTCTCGTTATACAGCCCA-ATAA
* *
48448519 GTTTCCCGTTATACAGCCCGAATAA
1 GCTTCTCGTTATACAGCCC-AATAA
48448544 GCTTCTCGTTATA
1 GCTTCTCGTTATA
48448557 TAGCTCACAT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
25 32 0.97
26 1 0.03
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.32
Consensus pattern (24 bp):
GCTTCTCGTTATACAGCCCAATAA
Found at i:48456710 original size:23 final size:25
Alignment explanation
Indices: 48456671--48456731 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 25
48456661 ACAAAAATAT
48456671 TAAAAAAACTTAAAATAA-TAT-TACA
1 TAAAAAAA--TAAAATAAGTATATACA
*
48456696 TAATAAAATAAAATAATGTATATACA
1 TAAAAAAATAAAATAA-GTATATACA
48456722 TAAAAAAATA
1 TAAAAAAATA
48456732 GGTAGATAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
23 8 0.26
25 10 0.32
26 13 0.42
ACGTcount: A:0.66, C:0.05, G:0.02, T:0.28
Consensus pattern (25 bp):
TAAAAAAATAAAATAAGTATATACA
Found at i:48456787 original size:24 final size:24
Alignment explanation
Indices: 48456755--48456808 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 24
48456745 ATAAACTAGT
*
48456755 ATAATAACAAT-ATCAATAATATTA
1 ATAATAACAATGATC-ATAATAATA
48456779 ATAATAACAATGATCATAATAATA
1 ATAATAACAATGATCATAATAATA
*
48456803 GTAATA
1 ATAATA
48456809 GTAAATTAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 24 0.89
25 3 0.11
ACGTcount: A:0.57, C:0.07, G:0.04, T:0.31
Consensus pattern (24 bp):
ATAATAACAATGATCATAATAATA
Found at i:48457923 original size:50 final size:50
Alignment explanation
Indices: 48457831--48458433 Score: 286
Period size: 50 Copynumber: 12.2 Consensus size: 50
48457821 TGTGTCTGTA
* ** * * *
48457831 GGGAACTAAGATTTGCTTTTGTAGCTTTAATCGGTTCGACTGCACCGCCA
1 GGGAAGTAAGATTCACTTTTGTAGCTTTAATCAGTTCCACTGCACCGCCG
* * * *
48457881 TGGAAGTAAGATTCACTTTTGTAGCTTTGATCAGTTCCACTGCACCACCA
1 GGGAAGTAAGATTCACTTTTGTAGCTTTAATCAGTTCCACTGCACCGCCG
* * * **
48457931 TGGAAGTAAGATTC-TTTGTTGTAGCTTTAATCTA-TTCC-CGTGCATCATCG
1 GGGAAGTAAGATTCACTT-TTGTAGCTTTAATC-AGTTCCAC-TGCACCGCCG
* * * * * ** *
48457981 GGGAAGTAGGATTCACTGTTGTAGCGTTAAT-ATGTTTCATTGCAATGTCG
1 GGGAAGTAAGATTCACTTTTGTAGCTTTAATCA-GTTCCACTGCACCGCCG
*
48458031 GGGAAGTAAGATTCA-TTGTTGTAGCTTTAATCTGTTCCACTGCACCGCCG
1 GGGAAGTAAGATTCACTT-TTGTAGCTTTAATCAGTTCCACTGCACCGCCG
* ** * * * *
48458081 GGGAAATAATTTTC-GTTGTTGTAGCTTTAATCTGTTTCACTGC-CATGCCG
1 GGGAAGTAAGATTCACTT-TTGTAGCTTTAATCAGTTCCACTGCAC-CGCCG
* * * * * *** *
48458131 GGGAAGTAAGATTCGCTATTGTAGCTTTAAT-ATATTTCATTGCAATTCTG
1 GGGAAGTAAGATTCACTTTTGTAGCTTTAATCA-GTTCCACTGCACCGCCG
* * * ** * * * *
48458181 GGGAAGTAAGATTCGCTGTTGTAGCCTTAATTTGTTTCACCGCAACACCG
1 GGGAAGTAAGATTCACTTTTGTAGCTTTAATCAGTTCCACTGCACCGCCG
* * *** *
48458231 GGGAAGTAAGATTC-GTTGTT-TAG--TT--T--GTTCCATTGCACTTTCA
1 GGGAAGTAAGATTCACTT-TTGTAGCTTTAATCAGTTCCACTGCACCGCCG
** * * * * * *
48458274 ACGAAGTAAGATTCGCTGTTATAGCTTTAATCTGTTTCACTGC-CACACCG
1 GGGAAGTAAGATTCACTTTTGTAGCTTTAATCAGTTCCACTGCAC-CGCCG
* * * ** **
48458324 GGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTGTTCCACTGCAATGCTA
1 GGGAAGTAAGATTCACTTTTGTAGCTTTAATCAGTTCCACTGCACCGCCG
* * * * * * ***
48458374 GGGAGGTAAGATTCACTGTTGTAGCTTCAATCTGTTTCACTGTAATACCG
1 GGGAAGTAAGATTCACTTTTGTAGCTTTAATCAGTTCCACTGCACCGCCG
48458424 GGGAAGTAAG
1 GGGAAGTAAG
48458434 GTTTGTGGCT
Statistics
Matches: 432, Mismatches: 95, Indels: 52
0.75 0.16 0.09
Matches are distributed among these distances:
43 23 0.05
44 4 0.01
45 1 0.00
46 2 0.00
47 2 0.00
48 2 0.00
49 10 0.02
50 385 0.89
51 3 0.01
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.35
Consensus pattern (50 bp):
GGGAAGTAAGATTCACTTTTGTAGCTTTAATCAGTTCCACTGCACCGCCG
Found at i:48457994 original size:100 final size:100
Alignment explanation
Indices: 48457882--48458433 Score: 317
Period size: 100 Copynumber: 5.6 Consensus size: 100
48457872 GCACCGCCAT
* * * * * *
48457882 GGAAGTAAGATTCACTTTTGTAGCTTTGATCA-GTTCCACTGCACCACCATGGAAGTAAGATTCT
1 GGAAGTAAGATTCACTGTTGTAGCGTTAAT-ATGTTCCACTGCAACACCAGGGAAGTAAGATTCA
48457946 TTGTTGTAGCTTTAATCTATTCCCGTGCATCATCGG
65 TTGTTGTAGCTTTAATCTATTCCCGTGCATCATCGG
* * * *** *
48457982 GGAAGTAGGATTCACTGTTGTAGCGTTAATATGTTTCATTGCAATGTCGGGGAAGTAAGATTCAT
1 GGAAGTAAGATTCACTGTTGTAGCGTTAATATGTTCCACTGCAACACCAGGGAAGTAAGATTCAT
* * **
48458047 TGTTGTAGCTTTAATCTGTTCCAC-TGCACCGCCGG
66 TGTTGTAGCTTTAATCTATTCC-CGTGCATCATCGG
* ** ** * * * * ** * **
48458082 GGAAATAATTTTCGTTGTTGTAGCTTTAATCTGTTTCACTGCCATGCCGGGGAAGTAAGATTCGC
1 GGAAGTAAGATTCACTGTTGTAGCGTTAATATGTTCCACTGCAACACCAGGGAAGTAAGATTCAT
* * * **
48458147 TATTGTAGCTTTAATATATTTCATTGCA--ATTCTGG
66 TGTTGTAGCTTTAATCTATTCCCGTGCATCA-TC-GG
* * * * * * *
48458182 GGAAGTAAGATTCGCTGTTGTAGCCTTAATTTGTTTCACCGCAACACCGGGGAAGTAAGATTCGT
1 GGAAGTAAGATTCACTGTTGTAGCGTTAATATGTTCCACTGCAACACCAGGGAAGTAAGATTCAT
** * * * *
48458247 TGTT-TAG-TTTGTTCCATTGCAC-T--TTCAAC--
66 TGTTGTAGCTTTAATCTATT-CCCGTGCATCATCGG
* * * * * * * **
48458276 -GAAGTAAGATTCGCTGTTATAGCTTTAATCTGTTTCACTGCCACACCGGGGAAGTAAGATTCGC
1 GGAAGTAAGATTCACTGTTGTAGCGTTAATATGTTCCACTGCAACACCAGGGAAGTAAGATTCAT
* *
48458340 TGTTGTAGCTTTAATCTGTTCCAC-TGCA--ATGCTAG
66 TGTTGTAGCTTTAATCTATTCC-CGTGCATCAT-C-GG
* * * * * *
48458375 GGAGGTAAGATTCACTGTTGTAGC-TTCAATCTGTTTCACTGTAATACCGGGGAAGTAAG
1 GGAAGTAAGATTCACTGTTGTAGCGTT-AATATGTTCCACTGCAACACCAGGGAAGTAAG
48458434 GTTTGTGGCT
Statistics
Matches: 356, Mismatches: 77, Indels: 38
0.76 0.16 0.08
Matches are distributed among these distances:
93 62 0.17
94 4 0.01
95 10 0.03
96 1 0.00
97 1 0.00
98 9 0.03
99 7 0.02
100 261 0.73
101 1 0.00
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.35
Consensus pattern (100 bp):
GGAAGTAAGATTCACTGTTGTAGCGTTAATATGTTCCACTGCAACACCAGGGAAGTAAGATTCAT
TGTTGTAGCTTTAATCTATTCCCGTGCATCATCGG
Found at i:48458102 original size:150 final size:147
Alignment explanation
Indices: 48457882--48458367 Score: 520
Period size: 150 Copynumber: 3.3 Consensus size: 147
48457872 GCACCGCCAT
* * * ** *
48457882 GGAAGTAAGATTCACTTTTGTAGCTTTGATCAGTTCCACTGCACCACCATGGAAGTAAGATTCTT
1 GGAAGTAAGATTCACTGTTGTAGCTTTAATCTGTTCCACTGCACCACCGGGGAAGTAAGATTCGT
* * * *
48457947 TGTTGTAGCTTTAATCTATTCCCGTGCATCATCGGGGAAGTAGGATTCACTGTTGTAGCGTTAAT
66 TGTTGTAGCTTTAATCTATTCAC-TGC-TCATCGGGGAAGTAAGATTCGCTGTTGTAGCTTTAAT
48458012 ATGTTTCATTGCAATGTCGG
129 ATGTTTCATTGCAAT-TCGG
* * * **
48458032 GGAAGTAAGATTCATTGTTGTAGCTTTAATCTGTTCCACTGCACCGCCGGGGAAATAATTTTCGT
1 GGAAGTAAGATTCACTGTTGTAGCTTTAATCTGTTCCACTGCACCACCGGGGAAGTAAGATTCGT
* *
48458097 TGTTGTAGCTTTAATCTGTTTCACTGC-CATGCCGGGGAAGTAAGATTCGCTATTGTAGCTTTAA
66 TGTTGTAGCTTTAATCT-ATTCACTGCTCAT--CGGGGAAGTAAGATTCGCTGTTGTAGCTTTAA
*
48458161 TATATTTCATTGCAATTCTGG
128 TATGTTTCATTGCAATTC-GG
* * * * * *
48458182 GGAAGTAAGATTCGCTGTTGTAGCCTTAATTTGTTTCACCGCAACACCGGGGAAGTAAGATTCGT
1 GGAAGTAAGATTCACTGTTGTAGCTTTAATCTGTTCCACTGCACCACCGGGGAAGTAAGATTCGT
** * * * * *
48458247 TGTT-TAG-TTTGTTCCATTGCACT-TTCAAC---GAAGTAAGATTCGCTGTTATAGCTTTAATC
66 TGTTGTAGCTTTAATCTATT-CACTGCTCATCGGGGAAGTAAGATTCGCTGTTGTAGCTTTAATA
* *
48458306 TGTTTCACTGCCACA-CCGG
130 TGTTTCATTG-CA-ATTCGG
*
48458325 GGAAGTAAGATTCGCTGTTGTAGCTTTAATCTGTTCCACTGCA
1 GGAAGTAAGATTCACTGTTGTAGCTTTAATCTGTTCCACTGCA
48458368 ATGCTAGGGA
Statistics
Matches: 283, Mismatches: 45, Indels: 23
0.81 0.13 0.07
Matches are distributed among these distances:
143 76 0.27
144 3 0.01
145 1 0.00
146 1 0.00
147 2 0.01
148 14 0.05
149 5 0.02
150 177 0.63
151 4 0.01
ACGTcount: A:0.24, C:0.19, G:0.22, T:0.36
Consensus pattern (147 bp):
GGAAGTAAGATTCACTGTTGTAGCTTTAATCTGTTCCACTGCACCACCGGGGAAGTAAGATTCGT
TGTTGTAGCTTTAATCTATTCACTGCTCATCGGGGAAGTAAGATTCGCTGTTGTAGCTTTAATAT
GTTTCATTGCAATTCGG
Found at i:48459802 original size:13 final size:12
Alignment explanation
Indices: 48459770--48459809 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
48459760 GGCCTCTCCA
*
48459770 TTTTTTTCTTTT
1 TTTTTTTATTTT
*
48459782 TTTCTTTATTTT
1 TTTTTTTATTTT
48459794 TTCTTTTTATTTT
1 TT-TTTTTATTTT
48459807 TTT
1 TTT
48459810 AGACTCAAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
12 13 0.54
13 11 0.46
ACGTcount: A:0.05, C:0.07, G:0.00, T:0.88
Consensus pattern (12 bp):
TTTTTTTATTTT
Found at i:48468548 original size:20 final size:19
Alignment explanation
Indices: 48468503--48468552 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 19
48468493 TGGATTGTTA
48468503 TTTTATTTTATTTTATTTGGT
1 TTTTA-TTTATTTTATTT-GT
48468524 TTTTATTTATTATTATTT-T
1 TTTTATTTATT-TTATTTGT
48468543 TGTTTATTTA
1 T-TTTATTTA
48468553 ATCTGCATGG
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
19 2 0.07
20 14 0.52
21 11 0.41
ACGTcount: A:0.18, C:0.00, G:0.06, T:0.76
Consensus pattern (19 bp):
TTTTATTTATTTTATTTGT
Done.