Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67659327
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 461372 characters in sequence are not A, C, G, or T
File 153 of 216
Found at i:48469048 original size:38 final size:38
Alignment explanation
Indices: 48468982--48469138 Score: 217
Period size: 38 Copynumber: 4.2 Consensus size: 38
48468972 AGTCCCGTTA
48468982 AACACCGGCACGAA-GCCTGCTAGGCACATAGCCCGAT
1 AACACCGGCACGAAGGCCTGCTAGGCACATAGCCCGAT
* * * * *
48469019 AACACCGGCATGAAGGCTTGCTAGACACATATCCCAAT
1 AACACCGGCACGAAGGCCTGCTAGGCACATAGCCCGAT
* *
48469057 AACACCGGCACGAAGGCTTGCTAGGCACATAGCCTGAT
1 AACACCGGCACGAAGGCCTGCTAGGCACATAGCCCGAT
* * *
48469095 AACACCGGCACAAAGGCCTACTAGGCATATAGCCCGAT
1 AACACCGGCACGAAGGCCTGCTAGGCACATAGCCCGAT
48469133 AACACC
1 AACACC
48469139 TTATAGACAA
Statistics
Matches: 104, Mismatches: 15, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
37 13 0.12
38 91 0.88
ACGTcount: A:0.32, C:0.32, G:0.22, T:0.14
Consensus pattern (38 bp):
AACACCGGCACGAAGGCCTGCTAGGCACATAGCCCGAT
Found at i:48475030 original size:15 final size:15
Alignment explanation
Indices: 48475006--48475049 Score: 79
Period size: 15 Copynumber: 2.9 Consensus size: 15
48474996 ATGCCTCACA
48475006 CACCGTGTTATCAAT
1 CACCGTGTTATCAAT
*
48475021 CACCGCGTTATCAAT
1 CACCGTGTTATCAAT
48475036 CACCGTGTTATCAA
1 CACCGTGTTATCAA
48475050 GAAACAATAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.30
Consensus pattern (15 bp):
CACCGTGTTATCAAT
Found at i:48476149 original size:13 final size:13
Alignment explanation
Indices: 48476131--48476157 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
48476121 AAACAACCAT
48476131 AAATAATCAATTA
1 AAATAATCAATTA
48476144 AAATAATCAATTA
1 AAATAATCAATTA
48476157 A
1 A
48476158 GCTACTAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (13 bp):
AAATAATCAATTA
Found at i:48481943 original size:17 final size:17
Alignment explanation
Indices: 48481913--48481946 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
48481903 TAAGAGGAAT
* *
48481913 AAAAATAAATAAATAAC
1 AAAAAGAAAAAAATAAC
48481930 AAAAAGAAAAAAATAAC
1 AAAAAGAAAAAAATAAC
48481947 GATAAATAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.79, C:0.06, G:0.03, T:0.12
Consensus pattern (17 bp):
AAAAAGAAAAAAATAAC
Found at i:48483199 original size:19 final size:19
Alignment explanation
Indices: 48483171--48483216 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
48483161 GTATGGGTTT
* *
48483171 ATACAATTCGTGTGCCAAG
1 ATACACTTCGTATGCCAAG
*
48483190 ATACACTTCGTATGCCAAT
1 ATACACTTCGTATGCCAAG
48483209 ATACACTT
1 ATACACTT
48483217 TATGTGCCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.33, C:0.24, G:0.13, T:0.30
Consensus pattern (19 bp):
ATACACTTCGTATGCCAAG
Found at i:48483224 original size:19 final size:19
Alignment explanation
Indices: 48483171--48483225 Score: 56
Period size: 19 Copynumber: 2.9 Consensus size: 19
48483161 GTATGGGTTT
* *
48483171 ATACAATTCGTGTGCCAAG
1 ATACACTTCATGTGCCAAG
* * *
48483190 ATACACTTCGTATGCCAAT
1 ATACACTTCATGTGCCAAG
*
48483209 ATACACTTTATGTGCCA
1 ATACACTTCATGTGCCA
48483226 GTTTATTTGC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.31
Consensus pattern (19 bp):
ATACACTTCATGTGCCAAG
Found at i:48489616 original size:42 final size:41
Alignment explanation
Indices: 48489501--48489618 Score: 112
Period size: 43 Copynumber: 2.8 Consensus size: 41
48489491 AAAAAGCTCG
* *
48489501 TACGATGCCAATGTCCCAGACGTGGTCTTACATGAAATCAAA
1 TACGATGCCAATGTCCCAGACATGGTCTTACA-CAAATCAAA
** * * * * *
48489543 TAAC-AGTGTTACTATCCCAAACAAGGTCTTACACATAATCATA
1 T-ACGA-TGCCAATGTCCCAGACATGGTCTTACACA-AATCAAA
48489586 TACGATGCCAATGTCCCAGACATGGTCTTACAC
1 TACGATGCCAATGTCCCAGACATGGTCTTACAC
48489619 GTAAATCACA
Statistics
Matches: 57, Mismatches: 15, Indels: 8
0.71 0.19 0.10
Matches are distributed among these distances:
42 27 0.47
43 30 0.53
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.25
Consensus pattern (41 bp):
TACGATGCCAATGTCCCAGACATGGTCTTACACAAATCAAA
Found at i:48489800 original size:23 final size:22
Alignment explanation
Indices: 48489773--48489825 Score: 63
Period size: 23 Copynumber: 2.4 Consensus size: 22
48489763 TATATACATT
48489773 AAAATTTA-ATTCGAAATTTATAA
1 AAAATTTACATTC-AAATTTA-AA
*
48489796 AAAATATACATTCAAATTTAAA
1 AAAATTTACATTCAAATTTAAA
*
48489818 AACATTTA
1 AAAATTTA
48489826 TTTACTTACA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
22 8 0.31
23 14 0.54
24 4 0.15
ACGTcount: A:0.55, C:0.08, G:0.02, T:0.36
Consensus pattern (22 bp):
AAAATTTACATTCAAATTTAAA
Found at i:48497071 original size:21 final size:21
Alignment explanation
Indices: 48497013--48497073 Score: 61
Period size: 21 Copynumber: 2.8 Consensus size: 21
48497003 TCTTAAAAAG
*
48497013 TTATTTTTATACAATAATAATATT
1 TTATTTTT-TAAAAT-AT-ATATT
* *
48497037 TTA-ATTTTAGAATATATATT
1 TTATTTTTTAAAATATATATT
48497057 TTATTTTTTAAAATATA
1 TTATTTTTTAAAATATA
48497074 ATTCTATCAT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 8 0.25
21 13 0.41
22 5 0.16
23 3 0.09
24 3 0.09
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.56
Consensus pattern (21 bp):
TTATTTTTTAAAATATATATT
Found at i:48497086 original size:21 final size:21
Alignment explanation
Indices: 48497028--48497087 Score: 54
Period size: 21 Copynumber: 3.0 Consensus size: 21
48497018 TTTATACAAT
* *
48497028 AATA-ATATTTTA-ATTTTAG
1 AATATATATTCTATATTTTAA
* *
48497047 AATATATATTTTATTTTTTAA
1 AATATATATTCTATATTTTAA
48497068 AATATA-ATTCTATCATTTTA
1 AATATATATTCTAT-ATTTTA
48497088 TTGATTTCAT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
19 4 0.12
20 14 0.41
21 16 0.47
ACGTcount: A:0.40, C:0.03, G:0.02, T:0.55
Consensus pattern (21 bp):
AATATATATTCTATATTTTAA
Found at i:48497219 original size:45 final size:45
Alignment explanation
Indices: 48497159--48497244 Score: 109
Period size: 45 Copynumber: 1.9 Consensus size: 45
48497149 CACTGTCTAA
* *
48497159 TTAACTAAATTACATATTATATACTATAAATTATTTATACTAAAT
1 TTAACTAAATCACATAGTATATACTATAAATTATTTATACTAAAT
* * * * *
48497204 TTAAGTAAATCACATAGTATTTATTGTTAATTATTTATACT
1 TTAACTAAATCACATAGTATATACTATAAATTATTTATACT
48497245 CGGTGGAAGA
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 34 1.00
ACGTcount: A:0.42, C:0.08, G:0.03, T:0.47
Consensus pattern (45 bp):
TTAACTAAATCACATAGTATATACTATAAATTATTTATACTAAAT
Found at i:48502429 original size:13 final size:13
Alignment explanation
Indices: 48502413--48502437 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
48502403 ATGGGTCATA
48502413 TGCCCGTGTGTGT
1 TGCCCGTGTGTGT
48502426 TGCCCGTGTGTG
1 TGCCCGTGTGTG
48502438 ACACAAGCCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.24, G:0.40, T:0.36
Consensus pattern (13 bp):
TGCCCGTGTGTGT
Found at i:48522755 original size:51 final size:51
Alignment explanation
Indices: 48522679--48522791 Score: 226
Period size: 51 Copynumber: 2.2 Consensus size: 51
48522669 TTCATTTATT
48522679 CAATTTAGTCCCTAATGTTACAAAGTTAACTAACAAGCTTAACTAACTTTA
1 CAATTTAGTCCCTAATGTTACAAAGTTAACTAACAAGCTTAACTAACTTTA
48522730 CAATTTAGTCCCTAATGTTACAAAGTTAACTAACAAGCTTAACTAACTTTA
1 CAATTTAGTCCCTAATGTTACAAAGTTAACTAACAAGCTTAACTAACTTTA
48522781 CAATTTAGTCC
1 CAATTTAGTCC
48522792 TTATCATGAT
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 62 1.00
ACGTcount: A:0.38, C:0.20, G:0.08, T:0.34
Consensus pattern (51 bp):
CAATTTAGTCCCTAATGTTACAAAGTTAACTAACAAGCTTAACTAACTTTA
Found at i:48524881 original size:21 final size:21
Alignment explanation
Indices: 48524857--48524987 Score: 86
Period size: 21 Copynumber: 6.2 Consensus size: 21
48524847 CACGGGCTAC
*
48524857 TCACAAGGCCGTGTAACTCTA
1 TCACAAGGCCGTGTGACTCTA
*
48524878 TCACACAGG-CGTGTGTCTCTA
1 TCACA-AGGCCGTGTGACTCTA
* * * *
48524899 CCACACGGCCGTGTGCCTCTT
1 TCACAAGGCCGTGTGACTCTA
* *** *
48524920 TCACACGGGTATGTCACTCTA
1 TCACAAGGCCGTGTGACTCTA
*
48524941 TCACACAGG-CGTGTGTCTCTA
1 TCACA-AGGCCGTGTGACTCTA
* * * *
48524962 CCACACGGCCGTGTGCCTCTT
1 TCACAAGGCCGTGTGACTCTA
48524983 TCACA
1 TCACA
48524988 CGGGTATGTC
Statistics
Matches: 83, Mismatches: 23, Indels: 8
0.73 0.20 0.07
Matches are distributed among these distances:
20 4 0.05
21 74 0.89
22 5 0.06
ACGTcount: A:0.19, C:0.34, G:0.21, T:0.26
Consensus pattern (21 bp):
TCACAAGGCCGTGTGACTCTA
Found at i:48524956 original size:63 final size:63
Alignment explanation
Indices: 48524872--48525009 Score: 267
Period size: 63 Copynumber: 2.2 Consensus size: 63
48524862 AGGCCGTGTA
48524872 ACTCTATCACACAGGCGTGTGTCTCTACCACACGGCCGTGTGCCTCTTTCACACGGGTATGTC
1 ACTCTATCACACAGGCGTGTGTCTCTACCACACGGCCGTGTGCCTCTTTCACACGGGTATGTC
48524935 ACTCTATCACACAGGCGTGTGTCTCTACCACACGGCCGTGTGCCTCTTTCACACGGGTATGTC
1 ACTCTATCACACAGGCGTGTGTCTCTACCACACGGCCGTGTGCCTCTTTCACACGGGTATGTC
*
48524998 ACTCTTTCACAC
1 ACTCTATCACAC
48525010 GACCGTGTAA
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
63 74 1.00
ACGTcount: A:0.18, C:0.34, G:0.20, T:0.28
Consensus pattern (63 bp):
ACTCTATCACACAGGCGTGTGTCTCTACCACACGGCCGTGTGCCTCTTTCACACGGGTATGTC
Found at i:48524988 original size:21 final size:20
Alignment explanation
Indices: 48524873--48524990 Score: 112
Period size: 21 Copynumber: 5.7 Consensus size: 20
48524863 GGCCGTGTAA
*
48524873 CTCTATCACACAGGCGTGTGT
1 CTCTATCACAC-GGCGTGTGC
*
48524894 CTCTACCACACGGCCGTGTGC
1 CTCTATCACACGG-CGTGTGC
* *
48524915 CTCTTTCACACGG-GTATGTC
1 CTCTATCACACGGCGTGTG-C
*
48524935 ACTCTATCACACAGGCGTGTGT
1 -CTCTATCACAC-GGCGTGTGC
*
48524957 CTCTACCACACGGCCGTGTGC
1 CTCTATCACACGG-CGTGTGC
*
48524978 CTCTTTCACACGG
1 CTCTATCACACGG
48524991 GTATGTCACT
Statistics
Matches: 79, Mismatches: 12, Indels: 12
0.77 0.12 0.12
Matches are distributed among these distances:
19 4 0.05
20 5 0.06
21 64 0.81
22 2 0.03
23 4 0.05
ACGTcount: A:0.17, C:0.35, G:0.22, T:0.26
Consensus pattern (20 bp):
CTCTATCACACGGCGTGTGC
Found at i:48525002 original size:21 final size:21
Alignment explanation
Indices: 48524873--48525010 Score: 90
Period size: 21 Copynumber: 6.6 Consensus size: 21
48524863 GGCCGTGTAA
* *
48524873 CTCTATCACACAGGCGTGTGT-
1 CTCTTTCACAC-GGCGTATGTC
** *
48524894 CTCTACCACACGGCCGTGTG-C
1 CTCTTTCACACGG-CGTATGTC
48524915 CTCTTTCACACGG-GTATGTC
1 CTCTTTCACACGGCGTATGTC
* *
48524935 ACTCTATCACACAGGCGTGTGT-
1 -CTCTTTCACAC-GGCGTATGTC
** *
48524957 CTCTACCACACGGCCGTGTG-C
1 CTCTTTCACACGG-CGTATGTC
48524978 CTCTTTCACACGG-GTATGTC
1 CTCTTTCACACGGCGTATGTC
48524998 ACTCTTTCACACG
1 -CTCTTTCACACG
48525011 ACCGTGTAAA
Statistics
Matches: 97, Mismatches: 10, Indels: 20
0.76 0.08 0.16
Matches are distributed among these distances:
19 8 0.08
20 6 0.06
21 76 0.78
22 2 0.02
23 5 0.05
ACGTcount: A:0.17, C:0.34, G:0.21, T:0.28
Consensus pattern (21 bp):
CTCTTTCACACGGCGTATGTC
Found at i:48525883 original size:24 final size:24
Alignment explanation
Indices: 48525855--48525902 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
48525845 GTACAGAGTG
*
48525855 TATAGGGACTTAAATCATATTTTA
1 TATAGGGACTTAAAGCATATTTTA
*
48525879 TATAGGGACTTAGAGCATATTTTA
1 TATAGGGACTTAAAGCATATTTTA
48525903 ACTTTTAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.35, C:0.08, G:0.17, T:0.40
Consensus pattern (24 bp):
TATAGGGACTTAAAGCATATTTTA
Found at i:48527330 original size:20 final size:20
Alignment explanation
Indices: 48527300--48527346 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
48527290 CTGGTTTAAT
*
48527300 TAAATAAATTATTAAAAATAA
1 TAAA-AAATTAATAAAAATAA
* *
48527321 TAAAAAATTAATAAAAGTAT
1 TAAAAAATTAATAAAAATAA
48527341 TAAAAA
1 TAAAAA
48527347 TAGGGAAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 19 0.83
21 4 0.17
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (20 bp):
TAAAAAATTAATAAAAATAA
Found at i:48527954 original size:31 final size:30
Alignment explanation
Indices: 48527882--48527947 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 30
48527872 TGAAGGATAC
*
48527882 ATTTTTAAAAAAATCTAAAAATATCATAAT
1 ATTTTTAAAATAATCTAAAAATATCATAAT
* *
48527912 ATTCTATAAAATAATCTAAAAAT-TCATTAT
1 ATT-TTTAAAATAATCTAAAAATATCATAAT
*
48527942 TTTTTT
1 ATTTTT
48527948 CTAAAATTAT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
29 2 0.07
30 11 0.37
31 17 0.57
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (30 bp):
ATTTTTAAAATAATCTAAAAATATCATAAT
Found at i:48530194 original size:48 final size:48
Alignment explanation
Indices: 48530120--48530212 Score: 143
Period size: 48 Copynumber: 1.9 Consensus size: 48
48530110 TGCTATGCAA
* * *
48530120 TGCTAAACTTGGTTTTCCACTTTCTACACTTTTATC-CATATTTATCTT
1 TGCTAAACTTGGTCTTCCACTGTCTACACTCTTATCAC-TATTTATCTT
48530168 TGCTAAACTTGGTCTTCCACTGTCTACACTCTTATCACTATTTAT
1 TGCTAAACTTGGTCTTCCACTGTCTACACTCTTATCACTATTTAT
48530213 TCCCTCTTGA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
48 40 0.98
49 1 0.02
ACGTcount: A:0.22, C:0.25, G:0.08, T:0.46
Consensus pattern (48 bp):
TGCTAAACTTGGTCTTCCACTGTCTACACTCTTATCACTATTTATCTT
Found at i:48531633 original size:18 final size:19
Alignment explanation
Indices: 48531591--48531638 Score: 62
Period size: 18 Copynumber: 2.5 Consensus size: 19
48531581 GATTCATATC
* *
48531591 TCATTTCATCATTTCATATT
1 TCATTTC-TCATCTCATAGT
48531611 TCATTTCTCATCTCAT-GT
1 TCATTTCTCATCTCATAGT
48531629 TCATTTCTCA
1 TCATTTCTCA
48531639 ACTTTTCCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 11 0.42
19 8 0.31
20 7 0.27
ACGTcount: A:0.21, C:0.25, G:0.02, T:0.52
Consensus pattern (19 bp):
TCATTTCTCATCTCATAGT
Found at i:48532480 original size:40 final size:40
Alignment explanation
Indices: 48532436--48532527 Score: 157
Period size: 40 Copynumber: 2.3 Consensus size: 40
48532426 TTAAATTTTA
* * *
48532436 ACAATTTAGTCCATATTGCTCAAAATTAATAATTAATTCC
1 ACAATTTAGTCCATATTACTCAAAATCAACAATTAATTCC
48532476 ACAATTTAGTCCATATTACTCAAAATCAACAATTAATTCC
1 ACAATTTAGTCCATATTACTCAAAATCAACAATTAATTCC
48532516 ACAATTTAGTCC
1 ACAATTTAGTCC
48532528 TTTTCTACTA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 49 1.00
ACGTcount: A:0.40, C:0.21, G:0.04, T:0.35
Consensus pattern (40 bp):
ACAATTTAGTCCATATTACTCAAAATCAACAATTAATTCC
Found at i:48532887 original size:26 final size:26
Alignment explanation
Indices: 48532831--48532887 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
48532821 TGTTATTACG
**
48532831 ACATATATAATATATATAATAAGTTA
1 ACATATATAATATATATAATAACATA
*
48532857 ACATATATAA-ATATATTATAGACATA
1 ACATATATAATATATATAATA-ACATA
*
48532883 TCATA
1 ACATA
48532888 AATGTTTCAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
25 9 0.35
26 17 0.65
ACGTcount: A:0.53, C:0.07, G:0.04, T:0.37
Consensus pattern (26 bp):
ACATATATAATATATATAATAACATA
Found at i:48533277 original size:17 final size:17
Alignment explanation
Indices: 48533255--48533287 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
48533245 TTTAAATAAA
*
48533255 TAAATATTTTTCTCAAT
1 TAAATAATTTTCTCAAT
48533272 TAAATAATTTTCTCAA
1 TAAATAATTTTCTCAA
48533288 CCCAATTCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.12, G:0.00, T:0.48
Consensus pattern (17 bp):
TAAATAATTTTCTCAAT
Found at i:48543319 original size:45 final size:45
Alignment explanation
Indices: 48543252--48543340 Score: 115
Period size: 45 Copynumber: 2.0 Consensus size: 45
48543242 GTTGAAAAAC
*
48543252 GCTATGGCATCATAATAAAAATGCGTAAGACCATGGCTGAAAGAT
1 GCTATGGCATCATAATAAAAATGAGTAAGACCATGGCTGAAAGAT
** * * * *
48543297 GCTATGGTGTCATGATATAAATGAGTAAGACCCTGGTTGAAAGA
1 GCTATGGCATCATAATAAAAATGAGTAAGACCATGGCTGAAAGA
48543341 CAGCATGACA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.37, C:0.13, G:0.25, T:0.25
Consensus pattern (45 bp):
GCTATGGCATCATAATAAAAATGAGTAAGACCATGGCTGAAAGAT
Found at i:48549494 original size:19 final size:19
Alignment explanation
Indices: 48549470--48549582 Score: 154
Period size: 19 Copynumber: 5.8 Consensus size: 19
48549460 AATTTTTGAG
48549470 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
**
48549489 GATATGCAATCCAAGATAT
1 GATATGCAATCTTAGATAT
**
48549508 GATATATGCTCTCTTAGATAT
1 G--ATATGCAATCTTAGATAT
48549529 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
**
48549548 GATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
48549567 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
48549583 ATATATGATT
Statistics
Matches: 80, Mismatches: 12, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
19 65 0.81
21 15 0.19
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:48549515 original size:40 final size:40
Alignment explanation
Indices: 48549471--48549577 Score: 164
Period size: 40 Copynumber: 2.7 Consensus size: 40
48549461 ATTTTTGAGG
48549471 ATATGCAATCTTAGATATGATATGCAATCCAAGATATGAT
1 ATATGCAATCTTAGATATGATATGCAATCCAAGATATGAT
** **
48549511 ATATGCTCTCTTAGATATGATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGATATGCAATCCAAGATATGAT
48549551 ATAT--AATCTTAGATATGATATGCAATC
1 ATATGCAATCTTAGATATGATATGCAATC
48549578 TTAGAATATA
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
38 21 0.34
40 40 0.66
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.36
Consensus pattern (40 bp):
ATATGCAATCTTAGATATGATATGCAATCCAAGATATGAT
Found at i:48550259 original size:24 final size:25
Alignment explanation
Indices: 48550215--48550264 Score: 68
Period size: 24 Copynumber: 2.0 Consensus size: 25
48550205 ATTTTTTCAG
48550215 CTATATTTTTTTAAACTAATATTTTC
1 CTATATTTTTTTAAAC-AATATTTTC
48550241 CTATA-TTTTTTAATA-AATATTTTC
1 CTATATTTTTTTAA-ACAATATTTTC
48550265 ATATTTATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 9 0.39
25 8 0.35
26 6 0.26
ACGTcount: A:0.32, C:0.10, G:0.00, T:0.58
Consensus pattern (25 bp):
CTATATTTTTTTAAACAATATTTTC
Found at i:48551066 original size:98 final size:97
Alignment explanation
Indices: 48550934--48551129 Score: 338
Period size: 98 Copynumber: 2.0 Consensus size: 97
48550924 TTAAAAATAA
* * **
48550934 TAAAGGAAATATTCCGATTTGGGATTTTAAAGGAATTGTGCCCTAACATATTGGGTGTGATTTCT
1 TAAAGGAAATATTCCAATTTGGGATTCTAAAGGAATCATGCCCTAACATATTGGGTGTGATTTCT
48550999 TAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TAAATCTTGGATAAGTGGATGTTCTTTTAAAG
*
48551031 TAAAGGAAATATTCCAAGTTTGGGATTCTAAAGGAATCATGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCAA-TTTGGGATTCTAAAGGAATCATGCCCTAACATATTGGGTGTGATTTC
48551096 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
65 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
48551129 T
1 T
48551130 TTTATTGTAC
Statistics
Matches: 93, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
97 16 0.17
98 77 0.83
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.37
Consensus pattern (97 bp):
TAAAGGAAATATTCCAATTTGGGATTCTAAAGGAATCATGCCCTAACATATTGGGTGTGATTTCT
TAAATCTTGGATAAGTGGATGTTCTTTTAAAG
Found at i:48551870 original size:16 final size:18
Alignment explanation
Indices: 48551846--48551886 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
48551836 AACAGCATAA
*
48551846 AAATTAAAT-AAATT-GG
1 AAATAAAATAAAATTGGG
48551862 AAATAAAATAAAATTGGG
1 AAATAAAATAAAATTGGG
48551880 AAATAAA
1 AAATAAA
48551887 TTTGTATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 8 0.36
17 5 0.23
18 9 0.41
ACGTcount: A:0.63, C:0.00, G:0.12, T:0.24
Consensus pattern (18 bp):
AAATAAAATAAAATTGGG
Found at i:48556393 original size:25 final size:27
Alignment explanation
Indices: 48556360--48556423 Score: 98
Period size: 25 Copynumber: 2.5 Consensus size: 27
48556350 TTTGTTGGGC
48556360 TTGTG-GGGTGTTGGGTATTGGATTTA
1 TTGTGTGGGTGTTGGGTATTGGATTTA
*
48556386 TT-T-TGGGTGTTGGGTATTGGGTTTA
1 TTGTGTGGGTGTTGGGTATTGGATTTA
48556411 TTGTGTGGGTGTT
1 TTGTGTGGGTGTT
48556424 TTATTCATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
25 23 0.68
26 3 0.09
27 8 0.24
ACGTcount: A:0.08, C:0.00, G:0.42, T:0.50
Consensus pattern (27 bp):
TTGTGTGGGTGTTGGGTATTGGATTTA
Found at i:48562282 original size:17 final size:18
Alignment explanation
Indices: 48562260--48562295 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
48562250 AAAAATTAAA
48562260 TAAATTG-GAAATAAATT
1 TAAATTGCGAAATAAATT
48562277 TAAATTGCGAAATAAATT
1 TAAATTGCGAAATAAATT
48562295 T
1 T
48562296 GTATTTTGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.50, C:0.03, G:0.11, T:0.36
Consensus pattern (18 bp):
TAAATTGCGAAATAAATT
Found at i:48564156 original size:40 final size:40
Alignment explanation
Indices: 48564084--48564180 Score: 117
Period size: 40 Copynumber: 2.5 Consensus size: 40
48564074 ATCGTCAGAT
48564084 CAACCG-AACACAGCAGAAAGAAACTCACAAGAGCTAATC
1 CAACCGAAACACAGCAGAAAGAAACTCACAAGAGCTAATC
* * *
48564123 CAACCGAAACAC-GCTAGACAGAAGCTCATAAGAGCTAATC
1 CAACCGAAACACAGC-AGAAAGAAACTCACAAGAGCTAATC
* * *
48564163 TAATCGAAACACACCAGA
1 CAACCGAAACACAGCAGA
48564181 TAAAGAGTAT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
39 8 0.16
40 40 0.82
41 1 0.02
ACGTcount: A:0.46, C:0.28, G:0.15, T:0.10
Consensus pattern (40 bp):
CAACCGAAACACAGCAGAAAGAAACTCACAAGAGCTAATC
Found at i:48568052 original size:22 final size:22
Alignment explanation
Indices: 48568010--48568076 Score: 68
Period size: 20 Copynumber: 3.0 Consensus size: 22
48568000 AATCGAAATG
48568010 AATA-AAAATTTTA-AAACATA
1 AATATAAAATTTTATAAACATA
*
48568030 AA-ATAAAATTTTATAAATTATA
1 AATATAAAATTTTATAAA-CATA
48568052 AATTATAATACATTTTATAAACATA
1 AA-TATAA-A-ATTTTATAAACATA
48568077 TACATATATT
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
19 1 0.03
20 11 0.29
21 3 0.08
22 5 0.13
24 4 0.11
25 4 0.11
26 10 0.26
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.37
Consensus pattern (22 bp):
AATATAAAATTTTATAAACATA
Found at i:48572895 original size:77 final size:76
Alignment explanation
Indices: 48572684--48572893 Score: 264
Period size: 76 Copynumber: 2.7 Consensus size: 76
48572674 TAACTCTTAG
* * * * *
48572684 AGTATTTTTTTTCTTGGTTTAGGAATTACTTAATTCCTTAAAACTCTTTAAGGTTTTAAGTAACC
1 AGTATTTTTTTTCCTGATTTAGAAATTACTTAATTTCTTAAAA-TATTTAAGGTTTTAAGTAACC
*
48572749 TTTAATAAATTA
65 CTTAATAAATTA
* *
48572761 AGTA--TTTTTCCCATGATTTA-AGAATTACTTAATTTCTTAAACACATTTAAGGTTTTAAGTAA
1 AGTATTTTTTTTCC-TGATTTAGA-AATTACTTAATTTCTTAAA-ATATTTAAGGTTTTAAGTAA
*
48572823 CCCTTCATAAATTA
63 CCCTTAATAAATTA
48572837 AGTATTTTTTTTCCTGATTTAGAAATTACTTAATTTCTTAAAGATATTTTAAGGTTT
1 AGTATTTTTTTTCCTGATTTAGAAATTACTTAATTTCTTAAA-ATA-TTTAAGGTTT
48572894 AAAGCAATCT
Statistics
Matches: 114, Mismatches: 12, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
75 6 0.05
76 57 0.50
77 33 0.29
78 18 0.16
ACGTcount: A:0.32, C:0.11, G:0.10, T:0.47
Consensus pattern (76 bp):
AGTATTTTTTTTCCTGATTTAGAAATTACTTAATTTCTTAAAATATTTAAGGTTTTAAGTAACCC
TTAATAAATTA
Found at i:48573458 original size:77 final size:75
Alignment explanation
Indices: 48573309--48573585 Score: 222
Period size: 77 Copynumber: 3.6 Consensus size: 75
48573299 AGGTGATGTT
* * * * * *
48573309 ATTAAGTAACTTTCTCATGGTTTAGGAATTATTTAATTACTTAAAAATCAGTTAATGTTTTAGGT
1 ATTAAGTAACTTTC-CATGATTTAGAAATTACTTAATTTCTTAAAAATCAGATAA-GTTTTAAGT
*
48573374 -GGTGTTAAAGAA
64 AAG-GTTAAAGAA
** * *
48573386 ATTAAGTAGTTTTCTCATGATTTAAAAATTACTTAATTTCTTAAACATCAGATAAGATTTTAAGT
1 ATTAAGTAACTTTC-CATGATTTAGAAATTACTTAATTTCTTAAAAATCAGATAAG-TTTTAAGT
48573451 AAGGTTAAAG-A
64 AAGGTTAAAGAA
* * * * * *
48573462 GTTAAGTAACTATCCAAT-ATTGTATGAGATT-CTTAATTTCTTAAAGACCA-ATTACGGTTTTA
1 ATTAAGTAACTTTCC-ATGATT-TA-GAAATTACTTAATTTCTTAAAAATCAGA-TA-AGTTTTA
**
48573524 AGTAACATTAAAGAA
61 AGTAAGGTTAAAGAA
* * *
48573539 TTTAAGTAATTTTCCATTGATTTAGGAATTACTTAATTTCTTAAAAA
1 ATTAAGTAACTTTCCA-TGATTTAGAAATTACTTAATTTCTTAAAAA
48573586 AAATTGTAAC
Statistics
Matches: 161, Mismatches: 28, Indels: 22
0.76 0.13 0.10
Matches are distributed among these distances:
75 5 0.03
76 56 0.35
77 96 0.60
78 4 0.02
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (75 bp):
ATTAAGTAACTTTCCATGATTTAGAAATTACTTAATTTCTTAAAAATCAGATAAGTTTTAAGTAA
GGTTAAAGAA
Found at i:48573523 original size:76 final size:77
Alignment explanation
Indices: 48573402--48573583 Score: 192
Period size: 76 Copynumber: 2.4 Consensus size: 77
48573392 TAGTTTTCTC
** * **
48573402 ATGATTTAAAAATTACTTAATTTCTTAAACATCAGATAAGATTTTAAGTAAGGTTAAAG-AGTTA
1 ATGATTTAGGAATTACTTAATTTCTTAAACACCAGATAAGATTTTAAGTAACATTAAAGAAGTTA
48573466 AGTAACTATCCA
66 AGTAACTATCCA
* * * * *
48573478 AT-ATTGTATGAGATT-CTTAATTTCTTAAAGACCA-ATTACGGTTTTAAGTAACATTAAAGAAT
1 ATGATT-TAGGA-ATTACTTAATTTCTTAAACACCAGA-TAAGATTTTAAGTAACATTAAAGAAG
* *
48573540 TTAAGTAATTTTCCA
63 TTAAGTAACTATCCA
*
48573555 TTGATTTAGGAATTACTTAATTTCTTAAA
1 ATGATTTAGGAATTACTTAATTTCTTAAA
48573584 AAAAATTGTA
Statistics
Matches: 87, Mismatches: 13, Indels: 11
0.78 0.12 0.10
Matches are distributed among these distances:
75 4 0.05
76 44 0.51
77 36 0.41
78 3 0.03
ACGTcount: A:0.40, C:0.09, G:0.12, T:0.40
Consensus pattern (77 bp):
ATGATTTAGGAATTACTTAATTTCTTAAACACCAGATAAGATTTTAAGTAACATTAAAGAAGTTA
AGTAACTATCCA
Found at i:48575665 original size:22 final size:24
Alignment explanation
Indices: 48575638--48575682 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
48575628 TGGTGTCATA
48575638 TTTT-TACAATATTAGAGATAATT
1 TTTTATACAATATTAGAGATAATT
*
48575661 TTTTATACAATATTAGGGATAA
1 TTTTATACAATATTAGAGATAA
48575683 GAGATATGGG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.40, C:0.04, G:0.11, T:0.44
Consensus pattern (24 bp):
TTTTATACAATATTAGAGATAATT
Found at i:48581829 original size:21 final size:21
Alignment explanation
Indices: 48581805--48581847 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
48581795 ATAATAAGTA
48581805 TATTAATATAAAAT-TATAAAC
1 TATTAA-ATAAAATATATAAAC
*
48581826 TATTAAATATAATATATAAAC
1 TATTAAATAAAATATATAAAC
48581847 T
1 T
48581848 TATACATGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.40
Consensus pattern (21 bp):
TATTAAATAAAATATATAAAC
Found at i:48582170 original size:21 final size:21
Alignment explanation
Indices: 48582128--48582175 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
48582118 TTTAAAATCC
48582128 AAATTTCAAAAATATAATATA
1 AAATTTCAAAAATATAATATA
*
48582149 AAATTATCATAAATATAA-ATA
1 AAATT-TCAAAAATATAATATA
*
48582170 ATATTT
1 AAATTT
48582176 ATCGTAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 1 0.04
21 12 0.50
22 11 0.46
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (21 bp):
AAATTTCAAAAATATAATATA
Found at i:48582185 original size:21 final size:22
Alignment explanation
Indices: 48582128--48582170 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
48582118 TTTAAAATCC
*
48582128 AAATT-TCAAAAATATAATATA
1 AAATTATCATAAATATAATATA
48582149 AAATTATCATAAATATAA-ATA
1 AAATTATCATAAATATAATATA
48582170 A
1 A
48582171 TATTTATCGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.33
Consensus pattern (22 bp):
AAATTATCATAAATATAATATA
Found at i:48585190 original size:125 final size:126
Alignment explanation
Indices: 48584961--48585314 Score: 579
Period size: 125 Copynumber: 2.8 Consensus size: 126
48584951 ATTATTTCGA
48584961 GTTGACGTTTCTG-GTCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTG
1 GTTGACGTTTCTGAG-CAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTG
* * *
48585025 TGAAATCACGCCCTCGTGGATGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTTT
65 TGAAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAACAAATAATTTTTTT
* * * *
48585087 -TCTGATGTTTCTGAGCAAATAGTATAAAATCGTTTCTACGAGAATGCTATTTGAG-AGAAATTG
1 GT-TGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTG
48585150 TGAAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAACAAATAATTTTTTT
65 TGAAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAACAAATAATTTTTTT
* * *
48585212 GTTGACATTTCTGAGAAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAAAAATTGT
1 GTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGT
48585277 GAAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAG
66 GAAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAG
48585315 CAAGTTTGGG
Statistics
Matches: 210, Mismatches: 14, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
125 115 0.55
126 94 0.45
127 1 0.00
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (126 bp):
GTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGT
GAAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAACAAATAATTTTTTT
Found at i:48589506 original size:15 final size:16
Alignment explanation
Indices: 48589481--48589511 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
48589471 ATAATTATCT
48589481 AAAAATACTTAAATAA
1 AAAAATACTTAAATAA
48589497 AAAAAT-CTTAAATAA
1 AAAAATACTTAAATAA
48589512 TAATTACAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (16 bp):
AAAAATACTTAAATAA
Found at i:48589692 original size:22 final size:22
Alignment explanation
Indices: 48589666--48589716 Score: 102
Period size: 22 Copynumber: 2.3 Consensus size: 22
48589656 AAAAATAAAT
48589666 TTGAGAGAATTTTGGAAGGAAA
1 TTGAGAGAATTTTGGAAGGAAA
48589688 TTGAGAGAATTTTGGAAGGAAA
1 TTGAGAGAATTTTGGAAGGAAA
48589710 TTGAGAG
1 TTGAGAG
48589717 GAAAAATTAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.39, C:0.00, G:0.33, T:0.27
Consensus pattern (22 bp):
TTGAGAGAATTTTGGAAGGAAA
Found at i:48597848 original size:29 final size:29
Alignment explanation
Indices: 48597782--48597849 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
48597772 GAGAAGTAAT
* * *
48597782 TTTATATTAATTAATTACGAAAAAATATG
1 TTTACATTAATTAATTACGAAAAAAAAAG
* *
48597811 TTTATATTAATTATATTATGAAAAAAAAAG
1 TTTACATTAATTA-ATTACGAAAAAAAAAG
48597841 -TTACATTAA
1 TTTACATTAA
48597850 GGACGTAATG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 21 0.62
30 13 0.38
ACGTcount: A:0.50, C:0.03, G:0.06, T:0.41
Consensus pattern (29 bp):
TTTACATTAATTAATTACGAAAAAAAAAG
Found at i:48598330 original size:19 final size:21
Alignment explanation
Indices: 48598288--48598331 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 21
48598278 AATTAATTTT
*
48598288 TATAGTATTTTAATTTTAGGA
1 TATAGTATTTTAATTTTAGAA
*
48598309 TATA-TATTTTATTTTTA-AA
1 TATAGTATTTTAATTTTAGAA
48598328 TATA
1 TATA
48598332 ATTATATGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 5 0.24
20 12 0.57
21 4 0.19
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.57
Consensus pattern (21 bp):
TATAGTATTTTAATTTTAGAA
Found at i:48598473 original size:24 final size:23
Alignment explanation
Indices: 48598428--48598498 Score: 97
Period size: 23 Copynumber: 3.0 Consensus size: 23
48598418 AATTACATAG
48598428 TATTTATTATAAATTATTTATAC
1 TATTTATTATAAATTATTTATAC
* * *
48598451 TATTTTTTATGAAATTATATATAT
1 TATTTATTAT-AAATTATTTATAC
*
48598475 TATTTATTATTAATTATTTATAC
1 TATTTATTATAAATTATTTATAC
48598498 T
1 T
48598499 TGATTAAGGA
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
23 20 0.50
24 20 0.50
ACGTcount: A:0.37, C:0.03, G:0.01, T:0.59
Consensus pattern (23 bp):
TATTTATTATAAATTATTTATAC
Found at i:48602297 original size:40 final size:40
Alignment explanation
Indices: 48602253--48602359 Score: 119
Period size: 40 Copynumber: 2.7 Consensus size: 40
48602243 CGCTTGGACA
* *
48602253 AAAAACACCACTAAAAATCAAGCATTAGCGACGC-TTTTAC
1 AAAAACGCCGCTAAAAATCAAGCATTAGCGACGCATTTT-C
* * * * *
48602293 AAAAACGCCGCTAAAGATCGAGTATTAGCGGCGCATTTTT
1 AAAAACGCCGCTAAAAATCAAGCATTAGCGACGCATTTTC
*
48602333 AAAAACGCCGCTAAGAAT-AAGCATTAG
1 AAAAACGCCGCTAAAAATCAAGCATTAG
48602360 TGGCGTTTTC
Statistics
Matches: 55, Mismatches: 11, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
39 7 0.13
40 44 0.80
41 4 0.07
ACGTcount: A:0.41, C:0.21, G:0.17, T:0.21
Consensus pattern (40 bp):
AAAAACGCCGCTAAAAATCAAGCATTAGCGACGCATTTTC
Found at i:48604042 original size:12 final size:12
Alignment explanation
Indices: 48604025--48604057 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
48604015 CATGATTTAA
48604025 AATTTTAAAATG
1 AATTTTAAAATG
48604037 AATTTTAAAA-G
1 AATTTTAAAATG
48604048 -ATTTTAAAAT
1 AATTTTAAAAT
48604058 TTTTTAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 9 0.45
11 1 0.05
12 10 0.50
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (12 bp):
AATTTTAAAATG
Found at i:48604045 original size:20 final size:20
Alignment explanation
Indices: 48604023--48604085 Score: 83
Period size: 20 Copynumber: 3.1 Consensus size: 20
48604013 TTCATGATTT
48604023 AAAATTTTAAAATGAATTTTA
1 AAAATTTTAAAATG-ATTTTA
*
48604044 AAAGATTTTAAAAT-TTTTTA
1 AAA-ATTTTAAAATGATTTTA
*
48604064 AAAATTTTAAAAAGATTTTA
1 AAAATTTTAAAATGATTTTA
48604084 AA
1 AA
48604086 CTTTTATTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
19 9 0.24
20 15 0.41
21 3 0.08
22 10 0.27
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (20 bp):
AAAATTTTAAAATGATTTTA
Found at i:48604053 original size:10 final size:10
Alignment explanation
Indices: 48604026--48604085 Score: 68
Period size: 10 Copynumber: 5.8 Consensus size: 10
48604016 ATGATTTAAA
48604026 ATTTTAAAATG
1 ATTTTAAAA-G
48604037 AATTTTAAAAG
1 -ATTTTAAAAG
*
48604048 ATTTTAAAAT
1 ATTTTAAAAG
*
48604058 TTTTTAAAA-
1 ATTTTAAAAG
48604067 ATTTTAAAAAG
1 ATTTT-AAAAG
48604078 ATTTTAAA
1 ATTTTAAA
48604086 CTTTTATTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
9 4 0.09
10 24 0.56
11 6 0.14
12 9 0.21
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (10 bp):
ATTTTAAAAG
Found at i:48604056 original size:30 final size:29
Alignment explanation
Indices: 48604020--48604091 Score: 92
Period size: 30 Copynumber: 2.4 Consensus size: 29
48604010 TTTTTCATGA
48604020 TTTAAAATTTTAAAATGAATTTT-AAAAGAT
1 TTTAAAATTTTAAAA--AATTTTAAAAAGAT
*
48604050 TTTAAAATTTTTTAAAAATTTTAAAAAGAT
1 TTTAAAA-TTTTAAAAAATTTTAAAAAGAT
*
48604080 TTTAAACTTTTA
1 TTTAAAATTTTA
48604092 TTTTTATAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
29 10 0.27
30 20 0.54
31 7 0.19
ACGTcount: A:0.47, C:0.01, G:0.04, T:0.47
Consensus pattern (29 bp):
TTTAAAATTTTAAAAAATTTTAAAAAGAT
Found at i:48606468 original size:27 final size:27
Alignment explanation
Indices: 48606433--48606516 Score: 102
Period size: 27 Copynumber: 3.1 Consensus size: 27
48606423 ATGTTTTTTA
*
48606433 TTTTATTTTATGTATTTACATTTCTTT
1 TTTTATTTTATGTATTTACATTTATTT
*
48606460 TTTTATTTTAT-T-TTATA-ATGTTTTTT
1 TTTTATTTTATGTATT-TACAT-TTATTT
48606486 ATTTTATTTTATGTATTTACATTTATTT
1 -TTTTATTTTATGTATTTACATTTATTT
48606514 TTT
1 TTT
48606517 GACTTGTTAT
Statistics
Matches: 49, Mismatches: 2, Indels: 12
0.78 0.03 0.19
Matches are distributed among these distances:
25 4 0.08
26 8 0.16
27 25 0.51
28 8 0.16
29 4 0.08
ACGTcount: A:0.20, C:0.04, G:0.04, T:0.73
Consensus pattern (27 bp):
TTTTATTTTATGTATTTACATTTATTT
Found at i:48607217 original size:12 final size:12
Alignment explanation
Indices: 48607200--48607227 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
48607190 GCTAGCCATG
48607200 ATGTTACTATTA
1 ATGTTACTATTA
48607212 ATGTTACTATTA
1 ATGTTACTATTA
48607224 ATGT
1 ATGT
48607228 CCTTAATCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.32, C:0.07, G:0.11, T:0.50
Consensus pattern (12 bp):
ATGTTACTATTA
Found at i:48608546 original size:43 final size:42
Alignment explanation
Indices: 48608483--48608836 Score: 332
Period size: 43 Copynumber: 8.3 Consensus size: 42
48608473 TTATGACCTT
*
48608483 TAGCGGCGTTTATGAGAAAAGCGCCGCTAAAGGTCATGTTCTA
1 TAGCGGCGTTTGTGA-AAAAGCGCCGCTAAAGGTCATGTTCTA
* * * * * *
48608526 TAGCGGCATTTGTAGAAAAAGCGCTGCTAAAGGTTAGGTTTTT
1 TAGCGGCGTTTGT-GAAAAAGCGCCGCTAAAGGTCATGTTCTA
* * * *
48608569 TAGTGGCGTTTGTGAGAAAAGCGTCACTAAAGGTCTTGTTCTA
1 TAGCGGCGTTTGTGA-AAAAGCGCCGCTAAAGGTCATGTTCTA
* * * *
48608612 TAGCGGCGTTTGTGGAAAAAGTGCCGTTAAAAGTCAT-TATCTT
1 TAGCGGCGTTTGT-GAAAAAGCGCCGCTAAAGGTCATGT-TCTA
* * * ** * * *
48608655 TAGTGGCGTTTTTGGGAGGAGTGCCACTAAAGGTCTTGTTCTA
1 TAGCGGCGTTTGT-GAAAAAGCGCCGCTAAAGGTCATGTTCTA
* * *
48608698 TAGCAGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATGATCTT
1 TAGCGGCGTTTGTGA-AAAAGCGCCGCTAAAGGTCATGTTCTA
* * *
48608741 TAGCGGCGTTTTTGAGAAAGCGCCGCTAAAGGTCTTGTTCTA
1 TAGCGGCGTTTGTGAAAAAGCGCCGCTAAAGGTCATGTTCTA
* * *
48608783 TAGCGGCGTTTGTTGGAAAAGCGCCGCTAAAGATCATGGTCTA
1 TAGCGGCGTTTG-TGAAAAAGCGCCGCTAAAGGTCATGTTCTA
*
48608826 TAGTGGCGTTT
1 TAGCGGCGTTT
48608837 ATTTATAAAA
Statistics
Matches: 245, Mismatches: 59, Indels: 14
0.77 0.19 0.04
Matches are distributed among these distances:
42 38 0.16
43 202 0.82
44 5 0.02
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.31
Consensus pattern (42 bp):
TAGCGGCGTTTGTGAAAAAGCGCCGCTAAAGGTCATGTTCTA
Found at i:48608630 original size:86 final size:85
Alignment explanation
Indices: 48608481--48608814 Score: 388
Period size: 86 Copynumber: 3.9 Consensus size: 85
48608471 TTTTATGACC
* * * * *
48608481 TTTAGCGGCGTTTATGAGAAAAGCGCCGCTAAAGGTCATGTTCTATAGCGGCATTTGTAGAAAAA
1 TTTAGCGGCGTTTTTGAGAAAAGCGCCACTAAAGGTCTTGTTCTATAGCGGCGTTTGTGGAAAAA
* *
48608546 GCGCTGCTAAAGGTTAGGTTT
66 GCGCCGCTAAAGGTCA-GTTT
* * *
48608567 TTTAGTGGCGTTTGTGAGAAAAGCGTCACTAAAGGTCTTGTTCTATAGCGGCGTTTGTGGAAAAA
1 TTTAGCGGCGTTTTTGAGAAAAGCGCCACTAAAGGTCTTGTTCTATAGCGGCGTTTGTGGAAAAA
* * *
48608632 GTGCCGTTAAAAGTCA-TTAT
66 GCGCCGCTAAAGGTCAGTT-T
* * ** * *
48608652 CTTTAGTGGCGTTTTTGGGAGGAGTGCCACTAAAGGTCTTGTTCTATAGCAGCGTTTGT-GATAA
1 -TTTAGCGGCGTTTTTGAGAAAAGCGCCACTAAAGGTCTTGTTCTATAGCGGCGTTTGTGGA-AA
* *
48608716 AAGCGCCGCTAAAGGTCATGATC
64 AAGCGCCGCTAAAGGTCA-GTTT
*
48608739 TTTAGCGGCGTTTTTGAG-AAAGCGCCGCTAAAGGTCTTGTTCTATAGCGGCGTTTGTTGG-AAA
1 TTTAGCGGCGTTTTTGAGAAAAGCGCCACTAAAGGTCTTGTTCTATAGCGGCGTTTG-TGGAAAA
48608802 AGCGCCGCTAAAG
65 AGCGCCGCTAAAG
48608815 ATCATGGTCT
Statistics
Matches: 210, Mismatches: 31, Indels: 15
0.82 0.12 0.06
Matches are distributed among these distances:
84 2 0.01
85 52 0.25
86 154 0.73
87 1 0.00
88 1 0.00
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (85 bp):
TTTAGCGGCGTTTTTGAGAAAAGCGCCACTAAAGGTCTTGTTCTATAGCGGCGTTTGTGGAAAAA
GCGCCGCTAAAGGTCAGTTT
Found at i:48622275 original size:27 final size:26
Alignment explanation
Indices: 48622191--48622277 Score: 70
Period size: 27 Copynumber: 3.2 Consensus size: 26
48622181 GGTTTCTGAT
*
48622191 TGGCGGCACCAAAGGT-TCTATACTGAC
1 TGGCGGCACCAATGGTGTC-ATA-TGAC
** * *
48622218 TGGCGGCACTGATGGTGCCA-ATGAGGT
1 TGGCGGCACCAATGGTGTCATATGA--C
48622245 TGGCGGCACCAATGGTGTCATATTGAC
1 TGGCGGCACCAATGGTGTCATA-TGAC
48622272 TGGCGG
1 TGGCGG
48622278 GACTATTCGT
Statistics
Matches: 46, Mismatches: 9, Indels: 10
0.71 0.14 0.15
Matches are distributed among these distances:
25 3 0.07
26 1 0.02
27 37 0.80
28 2 0.04
29 3 0.07
ACGTcount: A:0.21, C:0.22, G:0.34, T:0.23
Consensus pattern (26 bp):
TGGCGGCACCAATGGTGTCATATGAC
Found at i:48622531 original size:3 final size:3
Alignment explanation
Indices: 48622523--48622557 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
48622513 TTTTAGTTAG
* *
48622523 TAT TAT TAT TAT TAT TAT TAT TAT TGT TAG TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
48622558 AGATGTTATT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:48625267 original size:157 final size:151
Alignment explanation
Indices: 48624850--48625303 Score: 397
Period size: 157 Copynumber: 2.9 Consensus size: 151
48624840 GCAAGTTGAA
*
48624850 AAAAAAGTTAGTAAAAAACTCTTACTTCAGCCATTTGTTCGTATTTTTTTTCCGCATTTTATTAC
1 AAAAAAGTTAGTAAAAAACTCTTACTTCAGCCATTTGTTCGTA-TTTTTTTCCG-ATTTTATTAT
* * *
48624915 TTTAAAAAATATCTTAATTTCTAA-TTTATAATTTTACATTATTTCAGTGCGTAATGTTTG-AA-
64 TTTAAAAAATATCTTAATTTTTAATTTTATAATTTTACATTATTTCAGTGCATTATGTTTGAAAT
48624977 ATTTATTAATTTAGTGTGTTTTT
129 ATTTATTAATTTAGTGTGTTTTT
* * * * *
48625000 AAATTAATTTGGTGTAAGAAAAAAACTCTTA-TCCCTGCCATTTGCTT-GTATTATTTTCCCGAT
1 AAA--AA---AGT-T-AGTAAAAAACTCTTACT-TCAGCCATTTG-TTCGTATT-TTTTTCCGA-
* * * * * *
48625063 TTTTATTACTTTCAATAAAAATAT-TTTATTTTCGT-ATTTTATTATTTTATATTATTCCAATGC
55 TTTTATTA-TTT-TA-AAAAATATCTTAATTTT--TAATTTTATAATTTTACATTATTTCAGTGC
* * *
48625126 ATTTTGTTTGAAATATTTGTATTAA-TTATTTTTGAATTTTT
115 ATTATGTTTGAAATA-TT-TATTAATTTA-GTGTG--TTTTT
* * *
48625167 AAAAAAGTTAGTAATAAACTCTTACTTCGGCCATTTGTTCATATTTTTTATCCGTATTTTATTAT
1 AAAAAAGTTAGTAAAAAACTCTTACTTCAGCCATTTGTTCGTATTTTTT-TCCG-ATTTTATTAT
* * *
48625232 TTTAAAAAATATCATAATTTTTAATTTTATCATTTTACATTATTTTAGTGCATTATGTTTG-AA-
64 TTTAAAAAATATCTTAATTTTTAATTTTATAATTTTACATTATTTCAGTGCATTATGTTTGAAAT
48625295 ATTTATTAA
129 ATTTATTAA
48625304 ATATACAATT
Statistics
Matches: 240, Mismatches: 34, Indels: 57
0.73 0.10 0.17
Matches are distributed among these distances:
150 3 0.01
152 2 0.01
153 6 0.03
154 2 0.01
155 3 0.01
156 8 0.03
157 81 0.34
158 11 0.05
159 16 0.07
160 46 0.19
161 33 0.14
162 4 0.02
163 1 0.00
164 5 0.02
165 11 0.05
167 8 0.03
ACGTcount: A:0.31, C:0.10, G:0.08, T:0.50
Consensus pattern (151 bp):
AAAAAAGTTAGTAAAAAACTCTTACTTCAGCCATTTGTTCGTATTTTTTTCCGATTTTATTATTT
TAAAAAATATCTTAATTTTTAATTTTATAATTTTACATTATTTCAGTGCATTATGTTTGAAATAT
TTATTAATTTAGTGTGTTTTT
Found at i:48625743 original size:35 final size:35
Alignment explanation
Indices: 48625704--48625776 Score: 105
Period size: 35 Copynumber: 2.1 Consensus size: 35
48625694 CATTCCTTTT
*
48625704 CTTTCCTTCTTTTTTC-TTCTTCTTCTTGT-CCTCTC
1 CTTTCCTT-TTCTTTCTTTCTTCTTCTT-TCCCTCTC
48625739 CTTTCCTTTTCTTTCTTTCTTCTTCTTTCCCTCTC
1 CTTTCCTTTTCTTTCTTTCTTCTTCTTTCCCTCTC
48625774 CTT
1 CTT
48625777 CTCTCCCCCC
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
34 7 0.20
35 28 0.80
ACGTcount: A:0.00, C:0.36, G:0.01, T:0.63
Consensus pattern (35 bp):
CTTTCCTTTTCTTTCTTTCTTCTTCTTTCCCTCTC
Found at i:48628741 original size:29 final size:30
Alignment explanation
Indices: 48628665--48628748 Score: 84
Period size: 29 Copynumber: 2.9 Consensus size: 30
48628655 TTCAGTGTTG
* *
48628665 CGGATATA-CTGCCAGAACTCCAATATTTA
1 CGGATAAATCTGCCAGAACTCCCATATTTA
* * *
48628694 CGGATTAATCT-CCAAAACTCCCATATTTG
1 CGGATAAATCTGCCAGAACTCCCATATTTA
*
48628723 TGGATAAAT-TGCCAGAACTCCACATA
1 CGGATAAATCTGCCAGAACTCC-CATA
48628749 ACTCCTCTAT
Statistics
Matches: 44, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
28 1 0.02
29 37 0.84
30 6 0.14
ACGTcount: A:0.35, C:0.25, G:0.13, T:0.27
Consensus pattern (30 bp):
CGGATAAATCTGCCAGAACTCCCATATTTA
Found at i:48641539 original size:40 final size:40
Alignment explanation
Indices: 48641495--48641588 Score: 107
Period size: 40 Copynumber: 2.4 Consensus size: 40
48641485 CTGATACTAT
* * * * *
48641495 GATGGGCTAAGGTCGTACTGTAGATTTGATATTGTACTGA
1 GATGGGCTAAGGCCCTACTGCAGATTTGATACTATACTGA
* * * *
48641535 GATGGGTTAAGGCCCTACTGCATATTTGGTGCTATACTGA
1 GATGGGCTAAGGCCCTACTGCAGATTTGATACTATACTGA
48641575 GATGGGCTAAGGCC
1 GATGGGCTAAGGCC
48641589 TAAACACTGA
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.23, C:0.15, G:0.31, T:0.31
Consensus pattern (40 bp):
GATGGGCTAAGGCCCTACTGCAGATTTGATACTATACTGA
Found at i:48642474 original size:27 final size:28
Alignment explanation
Indices: 48642443--48642510 Score: 86
Period size: 27 Copynumber: 2.5 Consensus size: 28
48642433 AGATCAAAAT
*
48642443 TTTATTTTAAAAAATTTAAAATTT-TCC
1 TTTATTTTAAAAAATCTAAAATTTCTCC
* *
48642470 TTTATTTT-AAAAATCTAAACTTTCTCT
1 TTTATTTTAAAAAATCTAAAATTTCTCC
*
48642497 TTTTTTTTAAAAAA
1 TTTATTTTAAAAAA
48642511 AAAATTAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
26 13 0.37
27 17 0.49
28 5 0.14
ACGTcount: A:0.38, C:0.09, G:0.00, T:0.53
Consensus pattern (28 bp):
TTTATTTTAAAAAATCTAAAATTTCTCC
Found at i:48643456 original size:244 final size:250
Alignment explanation
Indices: 48643003--48643590 Score: 628
Period size: 246 Copynumber: 2.4 Consensus size: 250
48642993 CAACAGTTAT
* ** * *
48643003 ATATTAATTATTATCATATATTATTGTTTATTATTATAGTGGTTGAAAATATGCTCTAAGTCTCA
1 ATATTAATTATTATCATATATTATTGTTTATTATTATACTAATTGAAAATAGGCTCTAAGTCCCA
* * * * *
48643068 ATACTATTCGTACATTTGAAAGTTAACACTCCTACTCTATTATATAATATTATATAATATCGTAT
66 ATACTATTCATACATTTAAAAGTTAACACTCCTACTATATTATATAATACTATATAATATCATAT
* * ** *
48643133 AGTATACAGTATATTAATAATTTATATATATTTATCAATGATTTAACATTATAATATCATGCAAT
131 AGTATACAATATATTAATAAGTTATATATATGCATCAATGATTAAACATTATAATATCATGCAAT
*
48643198 ACTATATTTTTTATTATAATATATAATATAATATTTATATATAATAATACATTAC
196 ACTATATCTTTTATTATAATATATAATATAATATTTATATATAATAATACATTAC
* * * *
48643253 ATATTAATTATTAT-A-A-ATTATTGTTTATTATTATACTAATTG-AGATAGGTTTTAAGTCCCT
1 ATATTAATTATTATCATATATTATTGTTTATTATTATACTAATTGAAAATAGGCTCTAAGTCCCA
* * * * * *
48643314 ATACTTTTCATACATTTAAAAGTTAACATTCTTACTATATTATATAATGCTATATCATATCATGT
66 ATACTATTCATACATTTAAAAGTTAACACTCCTACTATATTATATAATACTATATAATATCATAT
* * *
48643379 TGTATATAATATATTAAT-AGTT-TATATATGCATCAATGATTAAACATTATAATATCATGTAAT
131 AGTATACAATATATTAATAAGTTATATATATGCATCAATGATTAAACATTATAATATCATGCAAT
* * *
48643442 ACTGTATCTTTTATTATAATCTGTAATATAATA---ATAGTAT-AT--T--A-T--
196 ACTATATCTTTTATTATAATATATAATATAATATTTATA-TATAATAATACATTAC
** * **
48643487 ATATTAA-T-TT-TCATATATTATTGTTTATTATTATACTGGTT-AAAATATG-TCTAAGTCCTT
1 ATATTAATTATTATCATATATTATTGTTTATTATTATACTAATTGAAAATAGGCTCTAAGTCCCA
* * * * *
48643547 ATACTTTTCGTACATTTGAAAGTTAGC-CCCCTACTATATTATAT
66 ATACTATTCATACATTTAAAAGTTAACACTCCTACTATATTATAT
48643591 CATATCATAC
Statistics
Matches: 289, Mismatches: 44, Indels: 28
0.80 0.12 0.08
Matches are distributed among these distances:
231 1 0.00
232 17 0.06
233 35 0.12
234 35 0.12
236 1 0.00
237 1 0.00
239 1 0.00
241 5 0.02
242 3 0.01
244 66 0.23
245 3 0.01
246 82 0.28
247 23 0.08
248 1 0.00
249 1 0.00
250 14 0.05
ACGTcount: A:0.37, C:0.10, G:0.07, T:0.46
Consensus pattern (250 bp):
ATATTAATTATTATCATATATTATTGTTTATTATTATACTAATTGAAAATAGGCTCTAAGTCCCA
ATACTATTCATACATTTAAAAGTTAACACTCCTACTATATTATATAATACTATATAATATCATAT
AGTATACAATATATTAATAAGTTATATATATGCATCAATGATTAAACATTATAATATCATGCAAT
ACTATATCTTTTATTATAATATATAATATAATATTTATATATAATAATACATTAC
Found at i:48643801 original size:19 final size:20
Alignment explanation
Indices: 48643779--48643824 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 20
48643769 TATTATAATC
48643779 TATATTATAGTAATA-GTTA
1 TATATTATAGTAATACGTTA
* *
48643798 TATATAATAGTAGTACGTTA
1 TATATTATAGTAATACGTTA
48643818 TATATTA
1 TATATTA
48643825 CTTATTATCA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 13 0.57
20 10 0.43
ACGTcount: A:0.41, C:0.02, G:0.11, T:0.46
Consensus pattern (20 bp):
TATATTATAGTAATACGTTA
Found at i:48647196 original size:18 final size:19
Alignment explanation
Indices: 48647155--48647198 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
48647145 ACTTCAACTT
*
48647155 TTTACTTATCTCTCTTACAA
1 TTTA-TTATCCCTCTTACAA
48647175 TTTATTATCCCTCTTA-AA
1 TTTATTATCCCTCTTACAA
48647193 TTTATT
1 TTTATT
48647199 TTGAAGTTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 8 0.35
19 11 0.48
20 4 0.17
ACGTcount: A:0.25, C:0.20, G:0.00, T:0.55
Consensus pattern (19 bp):
TTTATTATCCCTCTTACAA
Found at i:48649946 original size:21 final size:24
Alignment explanation
Indices: 48649917--48649965 Score: 59
Period size: 22 Copynumber: 2.1 Consensus size: 24
48649907 TATACATTTA
*
48649917 ATTTCTATA-CTTTTTAA-AAATT
1 ATTTCTATACCTTTCTAACAAATT
48649939 ATTT-TATACCTTTCTAATCAAATT
1 ATTTCTATACCTTTCTAA-CAAATT
48649963 ATT
1 ATT
48649966 CTTTTAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
21 4 0.17
22 11 0.48
24 8 0.35
ACGTcount: A:0.35, C:0.12, G:0.00, T:0.53
Consensus pattern (24 bp):
ATTTCTATACCTTTCTAACAAATT
Found at i:48662896 original size:8 final size:7
Alignment explanation
Indices: 48662864--48662894 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
48662854 TCAACAGAAG
*
48662864 TTTACTT
1 TTTAATT
48662871 TTTAATT
1 TTTAATT
48662878 TTTAATT
1 TTTAATT
48662885 TTTAATT
1 TTTAATT
48662892 TTT
1 TTT
48662895 TATACAATTG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (7 bp):
TTTAATT
Found at i:48666617 original size:29 final size:31
Alignment explanation
Indices: 48666584--48666659 Score: 93
Period size: 29 Copynumber: 2.5 Consensus size: 31
48666574 TTTACCTCAG
48666584 GTTACATTTTAGTCACTTAT-AT-TTGGAAT
1 GTTACATTTTAGTCACTTATGATATTGGAAT
* * * *
48666613 GTTACGTTTTAGTCACTTATGTTATTGTATT
1 GTTACATTTTAGTCACTTATGATATTGGAAT
*
48666644 GTAACATTTTAGTCAC
1 GTTACATTTTAGTCAC
48666660 CGAGCCATTA
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
29 19 0.49
30 1 0.03
31 19 0.49
ACGTcount: A:0.25, C:0.12, G:0.14, T:0.49
Consensus pattern (31 bp):
GTTACATTTTAGTCACTTATGATATTGGAAT
Found at i:48666657 original size:31 final size:29
Alignment explanation
Indices: 48666587--48666659 Score: 83
Period size: 31 Copynumber: 2.4 Consensus size: 29
48666577 ACCTCAGGTT
*
48666587 ACATTTTAGTCACTTATATTTGGAATGTT
1 ACATTTTAGTCACTTATATTTGGAATGTA
* * * *
48666616 ACGTTTTAGTCACTTATGTTATTGTATTGTA
1 ACATTTTAGTCACTTAT-AT-TTGGAATGTA
48666647 ACATTTTAGTCAC
1 ACATTTTAGTCAC
48666660 CGAGCCATTA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
29 16 0.44
30 1 0.03
31 19 0.53
ACGTcount: A:0.26, C:0.12, G:0.14, T:0.48
Consensus pattern (29 bp):
ACATTTTAGTCACTTATATTTGGAATGTA
Found at i:48678636 original size:38 final size:38
Alignment explanation
Indices: 48678568--48678674 Score: 132
Period size: 38 Copynumber: 2.9 Consensus size: 38
48678558 GCAAGTGTTT
*
48678568 CAAAATATTT--AATAAA-TTAGAAATGTGATTAAAAA
1 CAAAATATTTACAATAAATTTAGAAATGAGATTAAAAA
* *
48678603 TAAAATATTTACAATAAATTTAGAAACGAGATTAAAAA
1 CAAAATATTTACAATAAATTTAGAAATGAGATTAAAAA
*
48678641 CAAAATA-TCAGCAAATAAATTTAGAAATGAGATT
1 CAAAATATTTA-C-AATAAATTTAGAAATGAGATT
48678675 TTTTACCCAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
35 9 0.15
37 8 0.13
38 24 0.39
39 20 0.33
ACGTcount: A:0.56, C:0.06, G:0.09, T:0.29
Consensus pattern (38 bp):
CAAAATATTTACAATAAATTTAGAAATGAGATTAAAAA
Found at i:48681448 original size:15 final size:15
Alignment explanation
Indices: 48681428--48681457 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
48681418 ATGTAGGAGG
*
48681428 GATAAATCATATCCT
1 GATAAATCAAATCCT
48681443 GATAAATCAAATCCT
1 GATAAATCAAATCCT
48681458 ACTACATGGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.20, G:0.07, T:0.30
Consensus pattern (15 bp):
GATAAATCAAATCCT
Found at i:48686403 original size:30 final size:31
Alignment explanation
Indices: 48686346--48686403 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 31
48686336 GTAATTTTCA
* **
48686346 TTATAGTTTTTTGGATTATTTTTGTAAATAT
1 TTATAGTTTTTTGAATTATTTAAGTAAATAT
48686377 TTATA-TTTTTTGAATTATTTAAGTAAA
1 TTATAGTTTTTTGAATTATTTAAGTAAA
48686404 AAAGCCCAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 19 0.79
31 5 0.21
ACGTcount: A:0.31, C:0.00, G:0.10, T:0.59
Consensus pattern (31 bp):
TTATAGTTTTTTGAATTATTTAAGTAAATAT
Found at i:48694002 original size:16 final size:16
Alignment explanation
Indices: 48693983--48694017 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
48693973 TTAATTAATC
48693983 ATATTTTTACAAAAAA
1 ATATTTTTACAAAAAA
48693999 ATATTTTTACAAAAAA
1 ATATTTTTACAAAAAA
48694015 ATA
1 ATA
48694018 AATATATTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.37
Consensus pattern (16 bp):
ATATTTTTACAAAAAA
Found at i:48694306 original size:17 final size:16
Alignment explanation
Indices: 48694277--48694317 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
48694267 GAGCAATTAA
*
48694277 ATTTTTTTT--CTTTT
1 ATTTTTTTTAACTTTC
48694291 ATTTTCTTTTAACTTTC
1 ATTTT-TTTTAACTTTC
48694308 ATTTTTTTTA
1 ATTTTTTTTA
48694318 TTTATTTTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 5 0.22
15 4 0.17
16 5 0.22
17 9 0.39
ACGTcount: A:0.15, C:0.10, G:0.00, T:0.76
Consensus pattern (16 bp):
ATTTTTTTTAACTTTC
Found at i:48697150 original size:18 final size:18
Alignment explanation
Indices: 48697126--48697184 Score: 91
Period size: 18 Copynumber: 3.3 Consensus size: 18
48697116 TTTAGTGAAA
*
48697126 AATTACCCGAATTAACTG
1 AATTACCCGAATTAACCG
*
48697144 GATTACCCGAATTAACCG
1 AATTACCCGAATTAACCG
*
48697162 AATTACCTGAATTAACCG
1 AATTACCCGAATTAACCG
48697180 AATTA
1 AATTA
48697185 ACTGAATTGA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 37 1.00
ACGTcount: A:0.39, C:0.22, G:0.12, T:0.27
Consensus pattern (18 bp):
AATTACCCGAATTAACCG
Found at i:48697156 original size:27 final size:27
Alignment explanation
Indices: 48697126--48697192 Score: 89
Period size: 27 Copynumber: 2.5 Consensus size: 27
48697116 TTTAGTGAAA
* * *
48697126 AATTACCCGAATTAACTGGATTACCCG
1 AATTAACCGAATTAACTGAATTAACCG
*
48697153 AATTAACCGAATTACCTGAATTAACCG
1 AATTAACCGAATTAACTGAATTAACCG
*
48697180 AATTAACTGAATT
1 AATTAACCGAATT
48697193 GAATCACTAC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.39, C:0.21, G:0.12, T:0.28
Consensus pattern (27 bp):
AATTAACCGAATTAACTGAATTAACCG
Found at i:48697157 original size:9 final size:9
Alignment explanation
Indices: 48697126--48697192 Score: 73
Period size: 9 Copynumber: 7.4 Consensus size: 9
48697116 TTTAGTGAAA
*
48697126 AATTACCCG
1 AATTAACCG
*
48697135 AATTAACTG
1 AATTAACCG
* *
48697144 GATTACCCG
1 AATTAACCG
48697153 AATTAACCG
1 AATTAACCG
48697162 AATT-ACCTG
1 AATTAACC-G
48697171 AATTAACCG
1 AATTAACCG
*
48697180 AATTAACTG
1 AATTAACCG
48697189 AATT
1 AATT
48697193 GAATCACTAC
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
8 3 0.06
9 42 0.88
10 3 0.06
ACGTcount: A:0.39, C:0.21, G:0.12, T:0.28
Consensus pattern (9 bp):
AATTAACCG
Found at i:48697345 original size:23 final size:23
Alignment explanation
Indices: 48697295--48697348 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
48697285 AATTTTTATG
* **
48697295 ATTGAGTTGGGTTGGGTTGGGTA
1 ATTGGGTTGGGTTGGGTTGAATA
48697318 ATTGGGTTGGGTTGGGTTGAATA
1 ATTGGGTTGGGTTGGGTTGAATA
*
48697341 CTTGGGTT
1 ATTGGGTT
48697349 TGGATTAGGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.13, C:0.02, G:0.44, T:0.41
Consensus pattern (23 bp):
ATTGGGTTGGGTTGGGTTGAATA
Found at i:48700476 original size:25 final size:27
Alignment explanation
Indices: 48700443--48700506 Score: 51
Period size: 25 Copynumber: 2.3 Consensus size: 27
48700433 ACTAAAAACT
* *
48700443 AAAACTAAAACTAAAACTAAAAA-AAC
1 AAAACTAAAACTAAAAATAAAAATAAA
* *
48700469 AAAA-TAAAAATAAAAATAAATAAAATATA
1 AAAACTAAAACTAAAAAT--A-AAAATAAA
48700498 AAAACTAAA
1 AAAACTAAA
48700507 TGAAATCACT
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
25 11 0.38
26 4 0.14
27 1 0.03
28 4 0.14
29 5 0.17
30 4 0.14
ACGTcount: A:0.77, C:0.08, G:0.00, T:0.16
Consensus pattern (27 bp):
AAAACTAAAACTAAAAATAAAAATAAA
Found at i:48700482 original size:19 final size:21
Alignment explanation
Indices: 48700443--48700493 Score: 61
Period size: 19 Copynumber: 2.5 Consensus size: 21
48700433 ACTAAAAACT
*
48700443 AAAACTAAAACTAAAACTAAA
1 AAAACTAAAACTAAAAATAAA
48700464 AAAAC-AAAA-TAAAAATAAA
1 AAAACTAAAACTAAAAATAAA
*
48700483 AATAAATAAAA
1 AA-AACTAAAA
48700494 TATAAAAACT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
19 11 0.42
20 6 0.23
21 9 0.35
ACGTcount: A:0.78, C:0.08, G:0.00, T:0.14
Consensus pattern (21 bp):
AAAACTAAAACTAAAAATAAA
Found at i:48700485 original size:6 final size:6
Alignment explanation
Indices: 48700435--48700506 Score: 58
Period size: 6 Copynumber: 11.7 Consensus size: 6
48700425 ATAAAATAAC
* * * *
48700435 TAAAAA CTAAAAC TAAAAC TAAAAC TAAAAA AACAAAA TAAAAA TAAAAA
1 TAAAAA -TAAAAA TAAAAA TAAAAA TAAAAA TA-AAAA TAAAAA TAAAAA
48700485 T--AAA TAAAATA TAAAAA CTAAA
1 TAAAAA TAAAA-A TAAAAA -TAAA
48700507 TGAAATCACT
Statistics
Matches: 56, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
4 4 0.07
6 32 0.57
7 20 0.36
ACGTcount: A:0.75, C:0.08, G:0.00, T:0.17
Consensus pattern (6 bp):
TAAAAA
Found at i:48705223 original size:16 final size:17
Alignment explanation
Indices: 48705196--48705227 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
48705186 AGTATATATC
48705196 TATAATTATTATTTTAT
1 TATAATTATTATTTTAT
48705213 TATAA-TATTATTTTA
1 TATAATTATTATTTTA
48705228 AGGGTTAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (17 bp):
TATAATTATTATTTTAT
Found at i:48705761 original size:2 final size:2
Alignment explanation
Indices: 48705754--48705782 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
48705744 TGGGTCAATT
48705754 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
48705783 GATTATAGCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:48707239 original size:33 final size:34
Alignment explanation
Indices: 48707187--48707254 Score: 95
Period size: 33 Copynumber: 2.0 Consensus size: 34
48707177 TGTTATGTTA
* *
48707187 TGCTTGAAATTTTTGTTAAGTG-ATTACTTATATT
1 TGCTTGAAATATTTGTTAAG-GAACTACTTATATT
48707221 TGCTTGAAA-ATTTGTTAAGGAACTACTTATATT
1 TGCTTGAAATATTTGTTAAGGAACTACTTATATT
48707254 T
1 T
48707255 ATATTAAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
32 1 0.03
33 21 0.68
34 9 0.29
ACGTcount: A:0.29, C:0.07, G:0.15, T:0.49
Consensus pattern (34 bp):
TGCTTGAAATATTTGTTAAGGAACTACTTATATT
Found at i:48709750 original size:3 final size:3
Alignment explanation
Indices: 48709744--48709797 Score: 108
Period size: 3 Copynumber: 18.0 Consensus size: 3
48709734 GTACATGGTT
48709744 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
48709792 ATA ATA
1 ATA ATA
48709798 GTATTAATAG
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:48711343 original size:129 final size:129
Alignment explanation
Indices: 48711143--48711880 Score: 1007
Period size: 125 Copynumber: 5.8 Consensus size: 129
48711133 ATAATTTTAA
* * * * * *
48711143 AGATAAGTCT-GATGCGATCTACTCT-CTACAACTTCAGAGAGATAAGATCTATGGCTTTAATCT
1 AGATAAGACTGGATACGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTATGGTTTTAATCC
*
48711206 GCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTATCTGCTCCACTGCAACTTCAGGG
66 GCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTGCAACTTCAGGG
* * * * *
48711270 AGATAAGACTGGATGCGATTTGCTCTACTGTAACTTTAGCA-AGATAAGATCTGTGGTTTTAATC
1 AGATAAGACTGGATACGATCTGCTCTACTGCAACTTCAG-AGAGATAAGATCTATGGTTTTAATC
* *
48711334 CGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTCCTTTTGTCTGCTCCACTGCAACTTCAGGG
65 CGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTGCAACTTCAGGG
*
48711399 AGATAAGACTGGATACGATCTGCTCTACTGCAACTTTAGAGAGATAAGA--TAT-G-TTTAATCC
1 AGATAAGACTGGATACGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTATGGTTTTAATCC
* * *
48711460 ACTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTACAACTTCAGAG
66 GCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTGCAACTTCAGGG
* * * *
48711524 AGATAAGACTAGATACGATATGCTCTACTGTAACTTCAGAGAGATAAGATC--T-G-TTTAATCT
1 AGATAAGACTGGATACGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTATGGTTTTAATCC
* *
48711585 GCTCCACTGCAACTTCAGGGAGATGGGATTGGTTTCTTCTATCTGCTCCACTGCAACTTCAGGG
66 GCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTGCAACTTCAGGG
* * * *
48711649 ATATAAGACTAGATACGATCAGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCC
1 AGATAAGACTGGATACGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTATGGTTTTAATCC
* * * *
48711714 GCTCCACTGCAACTTTAAGGAGATAGGATTGGTTTCTTTTGTCTGCTCCACTGCAACTTCAGAG
66 GCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTGCAACTTCAGGG
* * * * * *
48711778 AGATAAGACTGTATGCAATCTGCTCT-CTGAAACTTCAGAGAGATAAGATCTTTGGTTTTAATCT
1 AGATAAGACTGGATACGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTATGGTTTTAATCC
**
48711842 GCTCCACTGCAACCTT-AGGGAGATAGGATTATTTTCTTC
66 GCTCCACTGCAA-CTTCAGGGAGATAGGATTGGTTTCTTC
48711881 AATTTTTTTA
Statistics
Matches: 545, Mismatches: 55, Indels: 21
0.88 0.09 0.03
Matches are distributed among these distances:
125 227 0.42
126 1 0.00
127 12 0.02
128 81 0.15
129 223 0.41
130 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (129 bp):
AGATAAGACTGGATACGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTATGGTTTTAATCC
GCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTGCAACTTCAGGG
Found at i:48711718 original size:85 final size:84
Alignment explanation
Indices: 48711171--48711785 Score: 335
Period size: 85 Copynumber: 7.2 Consensus size: 84
48711161 CTACTCTCTA
* * * * *
48711171 CAACTTCAGAGAGATAAGATCTATGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATT
1 CAACTTCAGAGAGATAAGA--TGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGACT
* * *
48711236 GGTTTCTTCTATCTGCTCCACTG
64 GG--TATACGATCTGCTCCACTG
* * * *** ** * * * **
48711259 CAACTTCAGGGAGATAAGA-CTGGATGCGATTTGCTCTACTGTAACTTTAGCAAGATAAGATCTG
1 CAACTTCAGAGAGATAAGATGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGA-C--
* *
48711323 TGGTTTTA--ATCCGCTCCACTG
63 TGG-TATACGATCTGCTCCACTG
* * ** *
48711344 CAACTTCAGGGAGATAGGAT-TGGTTCCTTTTGTCTGCTCCACTGCAACTTCAGGGAGATAAGAC
1 CAACTTCAGAGAGATAAGATGTGG-T--TTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGAC
*
48711408 TGG-ATACGATCTGCTCTACTG
63 TGGTATACGATCTGCTCCACTG
* * * * *
48711429 CAACTTTAGAGAGATAAGATAT-G-TTTAATCCACTCCACTGCAACTTCAGGGAGATAGGATTGG
1 CAACTTCAGAGAGATAAGATGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGACTGG
* * *
48711492 TTTCTTCTG-TCTGCTCCACTA
66 --TATAC-GATCTGCTCCACTG
* * * *** ** * * *
48711513 CAACTTCAGAGAGATAAGA-CTAGATACGATATGCTCTACTGTAACTTCAGAGAGATAAGATCT-
1 CAACTTCAGAGAGATAAGATGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGA-CTG
*
48711576 GTTTA--ATCTGCTCCACTG
65 GTATACGATCTGCTCCACTG
* ** * * *
48711594 CAACTTCAGGGAGATGGGAT-TGGTTTCTTCTATCTGCTCCACTGCAACTTCAGGGATATAAGAC
1 CAACTTCAGAGAGATAAGATGTGG-TT-TT-AATCCGCTCCACTGCAACTTCAGGGAGATAAGAC
* * *
48711658 TAG-ATACGATCAGCTCTACTG
63 TGGTATACGATCTGCTCCACTG
* * * *
48711679 CAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTTAAGGAGATAGGATT
1 CAACTTCAGAGAGATAAGA--TGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGACT
*
48711744 GGT-TTCTTTTG-TCTGCTCCACTG
64 GGTATAC----GATCTGCTCCACTG
48711767 CAACTTCAGAGAGATAAGA
1 CAACTTCAGAGAGATAAGA
48711786 CTGTATGCAA
Statistics
Matches: 403, Mismatches: 91, Indels: 66
0.72 0.16 0.12
Matches are distributed among these distances:
81 63 0.16
82 1 0.00
83 9 0.02
84 59 0.15
85 180 0.45
86 4 0.01
87 7 0.02
88 79 0.20
89 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.30
Consensus pattern (84 bp):
CAACTTCAGAGAGATAAGATGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGACTGG
TATACGATCTGCTCCACTG
Found at i:48711977 original size:50 final size:49
Alignment explanation
Indices: 48711923--48712194 Score: 259
Period size: 50 Copynumber: 5.4 Consensus size: 49
48711913 ATTCACTGTC
48711923 GTAGCTTCAATCTGTTCCACTGCACAGCCAGGAAAGTAAGATTCGCTATT
1 GTAGCTTCAATCTGTTCCACTGCACAGCCAGGAAAGTAAGATTCGCT-TT
* ** * * * *
48711973 GTAGCTTCAATCTTTTTAACTGCA-ATGTCGGGGAAGCAAGATTCGCCTTT
1 GTAGCTTCAATCTGTTCCACTGCACA-GCCAGGAAAGTAAGATTCG-CTTT
*
48712023 GT-GACTTCAATCTGTTCCACTGCACCA-CCTGGAAAGTAAGATTCGCTGTT
1 GTAG-CTTCAATCTGTTCCACTGCA-CAGCCAGGAAAGTAAGATTCGCT-TT
* ** * * *
48712073 GTAGCTTCAATCTTTTTAACTGCA-ATGTCAGGGAAGCAAGATTCGCCTTT
1 GTAGCTTCAATCTGTTCCACTGCACA-GCCAGGAAAGTAAGATTCG-CTTT
*
48712123 GT-GACTTCAATCTGTTCCACTGCACCA-CCTGGAAAGTAAGATTCGCTGTT
1 GTAG-CTTCAATCTGTTCCACTGCA-CAGCCAGGAAAGTAAGATTCGCT-TT
*
48712173 GTAGCTTCAATCTTTTCCACTG
1 GTAGCTTCAATCTGTTCCACTG
48712195 TATTGCCAAA
Statistics
Matches: 178, Mismatches: 29, Indels: 30
0.75 0.12 0.13
Matches are distributed among these distances:
48 1 0.01
49 7 0.04
50 162 0.91
51 6 0.03
52 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.32
Consensus pattern (49 bp):
GTAGCTTCAATCTGTTCCACTGCACAGCCAGGAAAGTAAGATTCGCTTT
Found at i:48712217 original size:100 final size:100
Alignment explanation
Indices: 48711927--48712188 Score: 481
Period size: 100 Copynumber: 2.6 Consensus size: 100
48711917 ACTGTCGTAG
* *
48711927 CTTCAATCTGTTCCACTGCA-CAGCCAGGAAAGTAAGATTCGCTATTGTAGCTTCAATCTTTTTA
1 CTTCAATCTGTTCCACTGCACCA-CCTGGAAAGTAAGATTCGCTGTTGTAGCTTCAATCTTTTTA
*
48711991 ACTGCAATGTCGGGGAAGCAAGATTCGCCTTTGTGA
65 ACTGCAATGTCAGGGAAGCAAGATTCGCCTTTGTGA
48712027 CTTCAATCTGTTCCACTGCACCACCTGGAAAGTAAGATTCGCTGTTGTAGCTTCAATCTTTTTAA
1 CTTCAATCTGTTCCACTGCACCACCTGGAAAGTAAGATTCGCTGTTGTAGCTTCAATCTTTTTAA
48712092 CTGCAATGTCAGGGAAGCAAGATTCGCCTTTGTGA
66 CTGCAATGTCAGGGAAGCAAGATTCGCCTTTGTGA
48712127 CTTCAATCTGTTCCACTGCACCACCTGGAAAGTAAGATTCGCTGTTGTAGCTTCAATCTTTT
1 CTTCAATCTGTTCCACTGCACCACCTGGAAAGTAAGATTCGCTGTTGTAGCTTCAATCTTTT
48712189 CCACTGTATT
Statistics
Matches: 158, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
100 156 0.99
101 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.32
Consensus pattern (100 bp):
CTTCAATCTGTTCCACTGCACCACCTGGAAAGTAAGATTCGCTGTTGTAGCTTCAATCTTTTTAA
CTGCAATGTCAGGGAAGCAAGATTCGCCTTTGTGA
Found at i:48712454 original size:44 final size:44
Alignment explanation
Indices: 48712406--48712563 Score: 192
Period size: 44 Copynumber: 3.6 Consensus size: 44
48712396 CCACTACAAC
** *
48712406 CCAGGGAGGCAAGGCTTACAATCTTCAACCTATTTCACTGCTGT
1 CCAGGGAGATAAGGCTTACAATCTTCAACCTATTCCACTGCTGT
*
48712450 CCAGGGAGATAGGGCTTACAATCTTCAACCTATTCCACTGCTGT
1 CCAGGGAGATAAGGCTTACAATCTTCAACCTATTCCACTGCTGT
* * * * **
48712494 CCAAGGAGATATGACTTGCAATCTTCAACCTATTCCACTATTGT
1 CCAGGGAGATAAGGCTTACAATCTTCAACCTATTCCACTGCTGT
* *
48712538 CCATGGAGAT-AGGATTCACAATCTTC
1 CCAGGGAGATAAGGCTT-ACAATCTTC
48712564 GATCTGCTTC
Statistics
Matches: 98, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
43 3 0.03
44 95 0.97
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.28
Consensus pattern (44 bp):
CCAGGGAGATAAGGCTTACAATCTTCAACCTATTCCACTGCTGT
Found at i:48714627 original size:25 final size:25
Alignment explanation
Indices: 48714599--48714658 Score: 84
Period size: 25 Copynumber: 2.4 Consensus size: 25
48714589 AAGAGAGTTC
*
48714599 AAAAGAATGAAAGAATAATTATTCA
1 AAAAGAATGAAAGAATAATTACTCA
* *
48714624 AAAAGAATGAAAGAATATTTGCTCA
1 AAAAGAATGAAAGAATAATTACTCA
48714649 AAAATGAATG
1 AAAA-GAATG
48714659 TAAAAATGTA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
25 26 0.84
26 5 0.16
ACGTcount: A:0.57, C:0.05, G:0.15, T:0.23
Consensus pattern (25 bp):
AAAAGAATGAAAGAATAATTACTCA
Found at i:48718761 original size:3 final size:3
Alignment explanation
Indices: 48718755--48718780 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
48718745 AATAATAATA
48718755 ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT
48718781 CGAAATCATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:48721553 original size:127 final size:127
Alignment explanation
Indices: 48721178--48721720 Score: 960
Period size: 127 Copynumber: 4.3 Consensus size: 127
48721168 GCTATTTTTA
* * *
48721178 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACCTCTGAAA
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGATGCGATCTGCTCTCTGCAACCTCAGAAA
48721243 GATAAGATCTGGATGTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTTCT
66 GATAAGATCTGGATGTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTTCT
* * * *
48721305 GTCTACTCCACTACAACTTTAGGGAGATAAGATCTGGATGTGATCTGCTCTCTGCAACCTCAGAA
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TGGATGCGATCTGCTCTCTGCAACCTCAGAA
48721370 AGATAAGATCTGGATGTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTTCT
65 AGATAAGATCTGGATGTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTTCT
* *
48721433 GTTTGCTCCCCTGCAACTTCAGGGAGATAAGATTGGATGCGATCTGCTCTCTGCAACCTCAGAAA
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGATGCGATCTGCTCTCTGCAACCTCAGAAA
48721498 GATAAGATCTGGATGTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTTCT
66 GATAAGATCTGGATGTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTTCT
* *
48721560 GTCTGCTCCCCTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTCTGCAACCTCAGAAA
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGATGCGATCTGCTCTCTGCAACCTCAGAAA
*
48721625 GATAAGATCTGGATGTTAATCCGCTCCACTGCAACTTTAGGGAGATAGGATTGATTTCTTCT
66 GATAAGATCTGGATGTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTTCT
*
48721687 GTCTGCTCCACTGTAACTTCAGGGAGATAAGATT
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGATT
48721721 TGAATGTTAA
Statistics
Matches: 396, Mismatches: 19, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
127 277 0.70
128 119 0.30
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (127 bp):
GTCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGATGCGATCTGCTCTCTGCAACCTCAGAAA
GATAAGATCTGGATGTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTTCT
Found at i:48721734 original size:87 final size:87
Alignment explanation
Indices: 48721348--48721805 Score: 419
Period size: 87 Copynumber: 5.4 Consensus size: 87
48721338 CTGGATGTGA
* * ** *
48721348 TCTGCT-CTCTGCAACCTCAGAAAGATAAGATCTGGATGTTAATCCGCTCCACTGCAACTTCAGG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGGATGTTAATCCGCTCCACTGCAACTTCAGG
48721412 GAGATAGGATTGATTTCTTCTG
66 GAGATAGGATTGATTTCTTCTG
* * ** * * * *
48721434 TTTGCTCCCCTGCAACTTCAGGGAGATAAGA-TTGGATG-CGATCTGCT-CTCTGCAACCTCAGA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGGATGTTAATCCGCTCCACTGCAACTTCAGG
* * **
48721496 AAGATAAGATCTGGATGTTAATC--
66 GAGATAGGAT-T-GAT-TTCTTCTG
* ** *
48721519 -C-GCTCCACTGCAACTTCAGGGAGATAGGA-TT-GAT-TTCTTCTGTCTGCTCCCCTGCAACTT
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGGATGTTAATC---C-GCTCCACTGCAACTT
* * *
48721579 CAGGGAGATAAGACTGGA----TGC-G
62 CAGGGAGATAGGA-TTGATTTCTTCTG
* * ** * *
48721601 ATCTGCT-CTCTGCAACCTCAGAAAGATAAGATCTGGATGTTAATCCGCTCCACTGCAACTTTAG
1 -TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGGATGTTAATCCGCTCCACTGCAACTTCAG
48721665 GGAGATAGGATTGATTTCTTCTG
65 GGAGATAGGATTGATTTCTTCTG
* * *
48721688 TCTGCTCCACTGTAACTTCAGGGAGATAAGATTTGAATGTTAATCCGCTCCACTGTAACTTCAGG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGGATGTTAATCCGCTCCACTGCAACTTCAGG
48721753 GAGATAGGATTGATTTCTTCTG
66 GAGATAGGATTGATTTCTTCTG
48721775 TCTGCTCCACTGCAACTTCAGGGAGATAAGA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGA
48721806 CTGTTTCACC
Statistics
Matches: 295, Mismatches: 53, Indels: 47
0.75 0.13 0.12
Matches are distributed among these distances:
81 1 0.00
82 8 0.03
83 53 0.18
84 41 0.14
85 11 0.04
86 30 0.10
87 150 0.51
88 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (87 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGGATGTTAATCCGCTCCACTGCAACTTCAGG
GAGATAGGATTGATTTCTTCTG
Found at i:48726598 original size:28 final size:28
Alignment explanation
Indices: 48726540--48726598 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 28
48726530 AATGATGTAG
* *
48726540 AAAAAAGAATAAAAGAATAATTACTCGA
1 AAAAAAGAATAAAAGAATAATGACTCAA
* *
48726568 AAAAAAGAATAAAAGAATACTGGCTCAA
1 AAAAAAGAATAAAAGAATAATGACTCAA
48726596 AAA
1 AAA
48726599 TGCATACGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.64, C:0.08, G:0.12, T:0.15
Consensus pattern (28 bp):
AAAAAAGAATAAAAGAATAATGACTCAA
Found at i:48741332 original size:24 final size:24
Alignment explanation
Indices: 48741298--48741379 Score: 103
Period size: 24 Copynumber: 3.4 Consensus size: 24
48741288 GTGGATGTTC
*
48741298 AACCTTTCACCTTTCATCTCCCTT
1 AACCTTTCACCTTTCATCTTCCTT
* *
48741322 AACCTTCCACCTTTCATCTTCTTT
1 AACCTTTCACCTTTCATCTTCCTT
*
48741346 AA-CTTTTAGCCTTTCATCTTCCTT
1 AACCTTTCA-CCTTTCATCTTCCTT
48741370 AAACCTTTCA
1 -AACCTTTCA
48741380 TCTTCTTGTA
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
23 4 0.08
24 37 0.77
25 2 0.04
26 5 0.10
ACGTcount: A:0.20, C:0.35, G:0.01, T:0.44
Consensus pattern (24 bp):
AACCTTTCACCTTTCATCTTCCTT
Found at i:48741608 original size:26 final size:26
Alignment explanation
Indices: 48741556--48741610 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
48741546 GTGTATTCAA
** *
48741556 TATATATTTTAATTTTTTATTTCTTT
1 TATATATTACAATTTTTTAATTCTTT
48741582 TATATATTACAATTTTTTAAATT-TTT
1 TATATATTACAATTTTTT-AATTCTTT
48741608 TAT
1 TAT
48741611 TTGTTTTTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (26 bp):
TATATATTACAATTTTTTAATTCTTT
Found at i:48745221 original size:19 final size:19
Alignment explanation
Indices: 48745194--48745286 Score: 68
Period size: 19 Copynumber: 5.1 Consensus size: 19
48745184 AATAAATTAC
*
48745194 TCATCTTAGTTAATTGAGT
1 TCATCTTAGTTAATTAAGT
*
48745213 TCATTTTAGTTAATTAAGT
1 TCATCTTAGTTAATTAAGT
** *** *
48745232 TGC-T-GGAACAAATT-ACT
1 T-CATCTTAGTTAATTAAGT
48745249 -CATCTTAGTTAATTAAGT
1 TCATCTTAGTTAATTAAGT
*
48745267 TCATCTTAGTTAATTTAGT
1 TCATCTTAGTTAATTAAGT
48745286 T
1 T
48745287 GCTGGAATAA
Statistics
Matches: 54, Mismatches: 15, Indels: 10
0.68 0.19 0.13
Matches are distributed among these distances:
15 1 0.02
16 1 0.02
17 7 0.13
18 7 0.13
19 37 0.69
20 1 0.02
ACGTcount: A:0.30, C:0.11, G:0.13, T:0.46
Consensus pattern (19 bp):
TCATCTTAGTTAATTAAGT
Found at i:48745238 original size:54 final size:54
Alignment explanation
Indices: 48745175--48745296 Score: 208
Period size: 54 Copynumber: 2.3 Consensus size: 54
48745165 ATAAGTATTT
* *
48745175 AGTTGCTGGAATAAATTACTCATCTTAGTTAATTGAGTTCATTTTAGTTAATTA
1 AGTTGCTGGAATAAATTACTCATCTTAGTTAATTAAGTTCATCTTAGTTAATTA
* *
48745229 AGTTGCTGGAACAAATTACTCATCTTAGTTAATTAAGTTCATCTTAGTTAATTT
1 AGTTGCTGGAATAAATTACTCATCTTAGTTAATTAAGTTCATCTTAGTTAATTA
48745283 AGTTGCTGGAATAA
1 AGTTGCTGGAATAA
48745297 TTTATTGTTG
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 63 1.00
ACGTcount: A:0.32, C:0.11, G:0.16, T:0.42
Consensus pattern (54 bp):
AGTTGCTGGAATAAATTACTCATCTTAGTTAATTAAGTTCATCTTAGTTAATTA
Found at i:48750008 original size:57 final size:57
Alignment explanation
Indices: 48749939--48750055 Score: 225
Period size: 57 Copynumber: 2.1 Consensus size: 57
48749929 TATCAAACAA
*
48749939 TCAATTCAAGATATATCAGGGTTTATTGCAGGGTATATTAAATAATTGGAATCCATT
1 TCAATTCAAGATATATCAGGGTTTATTGCAGGGTATATTAAAGAATTGGAATCCATT
48749996 TCAATTCAAGATATATCAGGGTTTATTGCAGGGTATATTAAAGAATTGGAATCCATT
1 TCAATTCAAGATATATCAGGGTTTATTGCAGGGTATATTAAAGAATTGGAATCCATT
48750053 TCA
1 TCA
48750056 GATGAGAGCC
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 59 1.00
ACGTcount: A:0.35, C:0.11, G:0.18, T:0.36
Consensus pattern (57 bp):
TCAATTCAAGATATATCAGGGTTTATTGCAGGGTATATTAAAGAATTGGAATCCATT
Found at i:48752161 original size:132 final size:132
Alignment explanation
Indices: 48752019--48752311 Score: 338
Period size: 132 Copynumber: 2.2 Consensus size: 132
48752009 CAGCAGCGAC
* ** *
48752019 ATAGGTTGAAGATTGTGAATCCTATCTCCCTGGACCGCAGCGAAATAGGTTGAAGATTGTGAGTC
1 ATAGGTTGAAGATTGTGAATCCTATCTCCCTGGACAGCAGCGAAATAGGTTGAAGATTACGAATC
* ** * *
48752084 CTATCTCCCTGAACAGTAGTGGAATAGGTTGAAGATTGC-AAGACTTATCTCCCTGAGCAGCAGT
66 CTATCTCCCTGAACAATAGTGGAATAAATTGAAGATTACGAA-ACTTATCTCCCTGAGCAACAGT
48752148 GGA
130 GGA
* * ** * *
48752151 ATGGGTTGAAGATTG-CAAGTCCTATCTCCCTGGGTAGCAGTGGAATAGGTTGAAGATTACGAAT
1 ATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGGACAGCAGCGAAATAGGTTGAAGATTACGAAT
* ** * * **
48752215 CTTATCTCCCTGGTCAATAGTGGAATAAATTGAATATTACGAATCTTATCTCCCTGTTCAACAGT
65 CCTATCTCCCTGAACAATAGTGGAATAAATTGAAGATTACGAAACTTATCTCCCTGAGCAACAGT
48752280 GGA
130 GGA
* *
48752283 ATAAGTGGAAGATTGTGAATCCTATCTCC
1 ATAGGTTGAAGATTGTGAATCCTATCTCC
48752312 TTGAGCAGTA
Statistics
Matches: 132, Mismatches: 26, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
131 2 0.02
132 126 0.95
133 4 0.03
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (132 bp):
ATAGGTTGAAGATTGTGAATCCTATCTCCCTGGACAGCAGCGAAATAGGTTGAAGATTACGAATC
CTATCTCCCTGAACAATAGTGGAATAAATTGAAGATTACGAAACTTATCTCCCTGAGCAACAGTG
GA
Found at i:48752325 original size:44 final size:43
Alignment explanation
Indices: 48751982--48752331 Score: 292
Period size: 44 Copynumber: 8.0 Consensus size: 43
48751972 GAAGCAAATC
* *
48751982 GAAGATTGTGAATCCTATCTCCTTGGACAGCAG-CGACATAGGTT
1 GAAGATTGTGAATCCTATCTCCCTGG-CAGCAGTGGA-ATAGGTT
* * *
48752026 GAAGATTGTGAATCCTATCTCCCTGGACCGCAGCGAAATAGGTT
1 GAAGATTGTGAATCCTATCTCCCTGG-CAGCAGTGGAATAGGTT
* * *
48752070 GAAGATTGTGAGTCCTATCTCCCTGAACAGTAGTGGAATAGGTT
1 GAAGATTGTGAATCCTATCTCCCTG-GCAGCAGTGGAATAGGTT
* * * *
48752114 GAAGATTG-CAAGACTTATCTCCCTGAGCAGCAGTGGAATGGGTT
1 GAAGATTGTGAA-TCCTATCTCCCTG-GCAGCAGTGGAATAGGTT
* *
48752158 GAAGATTG-CAAGTCCTATCTCCCTGGGTAGCAGTGGAATAGGTT
1 GAAGATTGTGAA-TCCTATCTCCCT-GGCAGCAGTGGAATAGGTT
** * ** **
48752202 GAAGATTACGAATCTTATCTCCCTGGTCAATAGTGGAATAAATT
1 GAAGATTGTGAATCCTATCTCCCTGG-CAGCAGTGGAATAGGTT
* ** * * * * *
48752246 GAATATTACGAATCTTATCTCCCTGTTCAACAGTGGAATAAGTG
1 GAAGATTGTGAATCCTATCTCCCTG-GCAGCAGTGGAATAGGTT
* * *
48752290 GAAGATTGTGAATCCTATCTCCTTGAGCAGTAGTGGAGTAGG
1 GAAGATTGTGAATCCTATCTCCCTG-GCAGCAGTGGAATAGG
48752332 CTGAGAATTA
Statistics
Matches: 254, Mismatches: 45, Indels: 14
0.81 0.14 0.04
Matches are distributed among these distances:
43 3 0.01
44 247 0.97
45 4 0.02
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.28
Consensus pattern (43 bp):
GAAGATTGTGAATCCTATCTCCCTGGCAGCAGTGGAATAGGTT
Found at i:48752325 original size:132 final size:131
Alignment explanation
Indices: 48752026--48752370 Score: 331
Period size: 132 Copynumber: 2.6 Consensus size: 131
48752016 GACATAGGTT
* * * ** * *
48752026 GAAGATTGTGAATCCTATCTCCCTGGACCGCAGCGAAATAGGTTGAAGATTGTGAGTCCTATCTC
1 GAAGATTGTGAATCCTATCTCCCTGG-CAGCAGTGGAATAGGTTGAAGATTACGAATCTTATCTC
* ** * * **
48752091 CCTGAACAGTAGTGGAATAGGTTGAAGATTGCAAGACTTATCTCCCTGAGCAGCAGTGGAATGGG
65 CCTGAACAATAGTGGAATAAATTGAAGATTACAAGACTTATCTCCCTGAGCAACAGTGGAATAAG
*
48752156 TT
130 TG
* *
48752158 GAAGATTG-CAAGTCCTATCTCCCTGGGTAGCAGTGGAATAGGTTGAAGATTACGAATCTTATCT
1 GAAGATTGTGAA-TCCTATCTCCCT-GGCAGCAGTGGAATAGGTTGAAGATTACGAATCTTATCT
** * * **
48752222 CCCTGGTCAATAGTGGAATAAATTGAATATTACGAA-TCTTATCTCCCTGTTCAACAGTGGAATA
64 CCCTGAACAATAGTGGAATAAATTGAAGATTAC-AAGACTTATCTCCCTGAGCAACAGTGGAATA
48752286 AGTG
128 AGTG
* * * *
48752290 GAAGATTGTGAATCCTATCTCCTTGAGCAGTAGTGGAGTAGGCTG-AGAATTAC-AGATCTTATC
1 GAAGATTGTGAATCCTATCTCCCTG-GCAGCAGTGGAATAGGTTGAAG-ATTACGA-ATCTTATC
*
48752353 TCCCT-AAGCAGTAGTGGA
63 TCCCTGAA-CAATAGTGGA
48752371 GCAGATCGAA
Statistics
Matches: 173, Mismatches: 32, Indels: 16
0.78 0.14 0.07
Matches are distributed among these distances:
131 6 0.03
132 161 0.93
133 6 0.03
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (131 bp):
GAAGATTGTGAATCCTATCTCCCTGGCAGCAGTGGAATAGGTTGAAGATTACGAATCTTATCTCC
CTGAACAATAGTGGAATAAATTGAAGATTACAAGACTTATCTCCCTGAGCAACAGTGGAATAAGT
G
Found at i:48752353 original size:44 final size:43
Alignment explanation
Indices: 48752305--48752461 Score: 138
Period size: 44 Copynumber: 3.6 Consensus size: 43
48752295 TTGTGAATCC
* * *
48752305 TATCTCCTTGAGCAGTAGTGGAGTAGGCTGAGAATTACAGATCT
1 TATCTCCCTAAGCAGTAGTGGAGTAGGATGA-AATTACAGATCT
* * ** *
48752349 TATCTCCCTAAGCAGTAGTGGAGCA-GATCGAAGTCCCCAG-CCT
1 TATCTCCCTAAGCAGTAGTGGAGTAGGAT-GAAAT-TACAGATCT
* * * * * *
48752392 TATTTCCCTGAGCAGCAGCGGAGTAGGTTTAAAATTACAGATCT
1 TATCTCCCTAAGCAGTAGTGGAGTAGG-ATGAAATTACAGATCT
48752436 TATCTCCCTAAGCAGTAGTGGAGTAG
1 TATCTCCCTAAGCAGTAGTGGAGTAG
48752462 ATCGAAGATA
Statistics
Matches: 85, Mismatches: 23, Indels: 10
0.72 0.19 0.08
Matches are distributed among these distances:
43 29 0.34
44 55 0.65
45 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (43 bp):
TATCTCCCTAAGCAGTAGTGGAGTAGGATGAAATTACAGATCT
Found at i:48752497 original size:87 final size:87
Alignment explanation
Indices: 48752308--48752468 Score: 232
Period size: 87 Copynumber: 1.9 Consensus size: 87
48752298 TGAATCCTAT
* * * * * *
48752308 CTCCTTGAGCAGTAGTGGAGTAGGCTGAGAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGC
1 CTCCCTGAGCAGCAGCGGAGTAGGTTTAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGC
* *
48752373 AGATCGAAGTCCCCAGCCTTAT
66 AGATCGAAGTCACCAGCCTTAC
* *
48752395 TTCCCTGAGCAGCAGCGGAGTAGGTTTAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGT
1 CTCCCTGAGCAGCAGCGGAGTAGGTTTAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGC
48752460 AGATCGAAG
66 AGATCGAAG
48752469 ATACTAGCCT
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
87 66 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.25
Consensus pattern (87 bp):
CTCCCTGAGCAGCAGCGGAGTAGGTTTAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGC
AGATCGAAGTCACCAGCCTTAC
Found at i:48752507 original size:87 final size:87
Alignment explanation
Indices: 48752337--48752507 Score: 202
Period size: 87 Copynumber: 2.0 Consensus size: 87
48752327 GTAGGCTGAG
* **
48752337 AATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGTCCCCAGCCTTATTTCCCTG
1 AATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGTCACCAGCCTTACCTCCCTG
* **
48752402 AGCAGCAGCGGAGTAGGTTTAA
66 AGCAGCAGCAGAACAGGTTTAA
* * * *
48752424 AATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGAT-ACTAGCCTTGCCTCTCT
1 AATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAG-TCACCAGCCTTACCTCCCT
**
48752488 CG-GTTGCAGCAGAACAGGTT
65 -GAGCAGCAGCAGAACAGGTT
48752508 GAAGATAGTA
Statistics
Matches: 70, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
87 68 0.97
88 2 0.03
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Consensus pattern (87 bp):
AATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGTCACCAGCCTTACCTCCCTG
AGCAGCAGCAGAACAGGTTTAA
Found at i:48752566 original size:88 final size:88
Alignment explanation
Indices: 48752460--48752668 Score: 251
Period size: 88 Copynumber: 2.4 Consensus size: 88
48752450 GTAGTGGAGT
* * * * *
48752460 AGATCGAAGATACTAGCCTTGCCTCTCTCG-GTTGCAGCAGAACAGGTTGAAGATAGTAGATCTT
1 AGATCGAAGACACTAGCCTTGCCTCCCT-GAGTTGCAGCAGAACAGGTTAAAAATAGCAGATCTT
* ** *
48752524 ACCTTCCTGTACTGACAGTGAAGC
65 ACCTTCCTGCACCAACAGCGAAGC
* * * *
48752548 AGATCGAAGACACTAGCCTTTCCTCCCTGAGTTGCAGCGGAGCAGGTTAAAAATAGCAGATCTTG
1 AGATCGAAGACACTAGCCTTGCCTCCCTGAGTTGCAGCAGAACAGGTTAAAAATAGCAGATCTTA
48752613 CCTTCCTGCACCAACAGCGAAGC
66 CCTTCCTGCACCAACAGCGAAGC
* * *
48752636 AGATCGAAGACACCAACCTTGCC-CCCTGGGTTG
1 AGATCGAAGACACTAGCCTTGCCTCCCTGAGTTG
48752669 TAGCGGAGCA
Statistics
Matches: 103, Mismatches: 17, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
87 10 0.10
88 93 0.90
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.22
Consensus pattern (88 bp):
AGATCGAAGACACTAGCCTTGCCTCCCTGAGTTGCAGCAGAACAGGTTAAAAATAGCAGATCTTA
CCTTCCTGCACCAACAGCGAAGC
Found at i:48753091 original size:45 final size:45
Alignment explanation
Indices: 48753012--48753288 Score: 279
Period size: 45 Copynumber: 6.0 Consensus size: 45
48753002 CAGGTTGAAA
* *
48753012 ATAGCAGATCTTGTCTTCCTGTATTAGCAATGAAGTAGATCAAAG
1 ATAGCAGATCTTGTCTTCCTGTATTGGCAGTGAAGTAGATCAAAG
* * * * *
48753057 ATAGTAGATCTTGTCTTCATATATTGGTAGTGAAGTAGATCGAAG
1 ATAGCAGATCTTGTCTTCCTGTATTGGCAGTGAAGTAGATCAAAG
** * *
48753102 ATAATAGATCTTATCTTCCTGTATTGGCAGCGAAGTAGATCAAAG
1 ATAGCAGATCTTGTCTTCCTGTATTGGCAGTGAAGTAGATCAAAG
48753147 ATAGCAGATCTTGTCTTCCTGTATTGGCAGTGAAGTAGATCAAATG
1 ATAGCAGATCTTGTCTTCCTGTATTGGCAGTGAAGTAGATCAAA-G
* * * * *
48753193 -TGGCAG-TCTTATCTCCCTGAGTAGCAGTGGAGCAGTGAAGTAGATTAAAG
1 ATAGCAGATCTTGTCTTCCT--GT---A-TTG-GCAGTGAAGTAGATCAAAG
* ** * *
48753243 ATAGCAGATCTTGTCTTCTTGTGCTGGCAGCGAAGTAGATCGAAG
1 ATAGCAGATCTTGTCTTCCTGTATTGGCAGTGAAGTAGATCAAAG
48753288 A
1 A
48753289 CACCAGTCCT
Statistics
Matches: 189, Mismatches: 33, Indels: 20
0.78 0.14 0.08
Matches are distributed among these distances:
44 10 0.05
45 138 0.73
46 4 0.02
49 1 0.01
50 5 0.03
51 22 0.12
52 9 0.05
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.31
Consensus pattern (45 bp):
ATAGCAGATCTTGTCTTCCTGTATTGGCAGTGAAGTAGATCAAAG
Found at i:48753254 original size:96 final size:96
Alignment explanation
Indices: 48753037--48753320 Score: 282
Period size: 96 Copynumber: 3.0 Consensus size: 96
48753027 TTCCTGTATT
* * * *
48753037 AGCAATGAAGTAGATCAAAGATAGTAGATCTTGTCTTCATATATTGGTAGTGAAGTAGATCGAAG
1 AGCAGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTATTGGCAGTGAAGTAGATC-AA-
* * *
48753102 ATAATAG-A-TCTTATCTTCCT--GT---A-TTG
64 AT-GTAGCAGTCTTATCTCCCTGAGTAGCAGTGG
* *
48753128 -GCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGTGAAGTAGATCAAAT
1 AGCAGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTATTGGCAGTGAAGTAGATCAAAT
*
48753192 GTGGCAGTCTTATCTCCCTGAGTAGCAGTGG
66 GTAGCAGTCTTATCTCCCTGAGTAGCAGTGG
* * ** * *
48753223 AGCAGTGAAGTAGATTAAAGATAGCAGATCTTGTCTTCTTGTGCTGGCAGCGAAGTAGATCGAA-
1 AGCAGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTATTGGCAGTGAAGTAGATCAAAT
* * * *
48753287 GACACCAGTCCTATCTCCCTGAGCAGCAGTGG
66 G-TAGCAGTCTTATCTCCCTGAGTAGCAGTGG
48753319 AG
1 AG
48753321 TAGGTTGAAG
Statistics
Matches: 161, Mismatches: 22, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
87 2 0.01
88 3 0.02
89 13 0.08
90 54 0.34
91 2 0.01
94 1 0.01
95 3 0.02
96 83 0.52
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (96 bp):
AGCAGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTATTGGCAGTGAAGTAGATCAAAT
GTAGCAGTCTTATCTCCCTGAGTAGCAGTGG
Found at i:48753467 original size:44 final size:43
Alignment explanation
Indices: 48753419--48753584 Score: 99
Period size: 44 Copynumber: 3.8 Consensus size: 43
48753409 GCCACCAATT
48753419 CTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATC
1 CTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAT-GCAAATC
* * * * **
48753463 CTATCTTCGC-AAGGTAGCAG-GGAAACAGATTTAAGCCAT-C-AATCC
1 CTATC-TCCCTAA-GCAGTAGTGG-AGCAGATCGAAG--ATGCAAAT-C
* * * * * *
48753508 CT-TCTCCCTGAGCAGTAGTGGAGTAGGTTGAAGATTGTAGATC
1 CTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGA-TGCAAATC
* *
48753551 CTGTCTCCTTAAGCAGTAGTGGAGCAGATCGAAG
1 CTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAG
48753585 GCAGTGAATC
Statistics
Matches: 89, Mismatches: 21, Indels: 24
0.66 0.16 0.18
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 19 0.21
44 45 0.51
45 21 0.24
47 2 0.02
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (43 bp):
CTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGCAAATC
Found at i:48753541 original size:88 final size:88
Alignment explanation
Indices: 48753343--48753542 Score: 249
Period size: 88 Copynumber: 2.3 Consensus size: 88
48753333 TGTAGATTCT
* * * * *
48753343 GCAGTAGTGGGGCAGATTGAAGACGACGAATCTTATCTTCCCAAAGTAGTAGGGAAACAAATTTA
1 GCAGTAGTGGAGCAGATTGAAGATGACAAATCCTATCTTCCCAAAGTAGCAGGGAAACAAATTTA
*
48753408 AGCCACCAATTCTATCTCCCTAA
66 AGCCACCAATCCTATCTCCCTAA
* * * * *
48753431 GCAGTAGTGGAGCAGATCGAAGATGGCAAATCCTATCTTCGCAAGGTAGCAGGGAAACAGATTTA
1 GCAGTAGTGGAGCAGATTGAAGATGACAAATCCTATCTTCCCAAAGTAGCAGGGAAACAAATTTA
* *
48753496 AGCCATCAATCCCT-TCTCCCTGA
66 AGCCACCAAT-CCTATCTCCCTAA
* *
48753519 GCAGTAGTGGAGTAGGTTGAAGAT
1 GCAGTAGTGGAGCAGATTGAAGAT
48753543 TGTAGATCCT
Statistics
Matches: 95, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
88 93 0.98
89 2 0.02
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.23
Consensus pattern (88 bp):
GCAGTAGTGGAGCAGATTGAAGATGACAAATCCTATCTTCCCAAAGTAGCAGGGAAACAAATTTA
AGCCACCAATCCTATCTCCCTAA
Found at i:48754868 original size:15 final size:15
Alignment explanation
Indices: 48754844--48754881 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
48754834 TTTTACACTC
*
48754844 TTATTGTATTA-ATTA
1 TTATTATATTATA-TA
48754859 TTATTATATTATATA
1 TTATTATATTATATA
48754874 TTATTATA
1 TTATTATA
48754882 CCTACATATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 20 0.95
16 1 0.05
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.61
Consensus pattern (15 bp):
TTATTATATTATATA
Found at i:48755083 original size:25 final size:27
Alignment explanation
Indices: 48755014--48755086 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 27
48755004 ATATACATTT
* * * *
48755014 ATATTTTATAATATTTATACATTTTCC
1 ATATTTTATAATATATATATATTATAC
48755041 ATATTTTATAAT-TCATATATA-TATAC
1 ATATTTTATAATAT-ATATATATTATAC
48755067 AT-TTTTATAATATATATATA
1 ATATTTTATAATATATATATA
48755087 CATATACTAT
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
25 16 0.40
26 7 0.17
27 17 0.43
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.53
Consensus pattern (27 bp):
ATATTTTATAATATATATATATTATAC
Found at i:48755085 original size:27 final size:27
Alignment explanation
Indices: 48755014--48755097 Score: 77
Period size: 27 Copynumber: 3.2 Consensus size: 27
48755004 ATATACATTT
* * *
48755014 ATATTTTATAATATT-TATACATTTTCC
1 ATATTTTATAATATTATATATA-TATAC
*
48755041 ATATTTTATAAT-TCATATATATATAC
1 ATATTTTATAATATTATATATATATAC
*
48755067 AT-TTTTATAATATATATATACATATAC
1 ATATTTTATAATAT-TATATATATATAC
48755094 -TATT
1 ATATT
48755098 CGAAATTATT
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
25 9 0.19
26 8 0.17
27 30 0.64
ACGTcount: A:0.39, C:0.08, G:0.00, T:0.52
Consensus pattern (27 bp):
ATATTTTATAATATTATATATATATAC
Found at i:48757481 original size:23 final size:23
Alignment explanation
Indices: 48757455--48757530 Score: 68
Period size: 23 Copynumber: 3.3 Consensus size: 23
48757445 ATCATTAAGC
48757455 AAATCTAATAAAAATTTGGGCCA
1 AAATCTAATAAAAATTTGGGCCA
* **
48757478 AAATCTTGAGATAAATCA-TTAAG-C-
1 AAATC-T-A-ATAAA-AATTTGGGCCA
48757502 AAATCTAATAAAAATTTGGGCCA
1 AAATCTAATAAAAATTTGGGCCA
48757525 AAATCT
1 AAATCT
48757531 TTCATTTTAA
Statistics
Matches: 40, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
20 1 0.03
21 8 0.20
22 2 0.05
23 12 0.30
24 6 0.15
25 2 0.05
26 8 0.20
27 1 0.03
ACGTcount: A:0.47, C:0.13, G:0.12, T:0.28
Consensus pattern (23 bp):
AAATCTAATAAAAATTTGGGCCA
Found at i:48757489 original size:47 final size:47
Alignment explanation
Indices: 48757438--48757531 Score: 188
Period size: 47 Copynumber: 2.0 Consensus size: 47
48757428 CACAACTTCA
48757438 GAGATAAATCATTAAGCAAATCTAATAAAAATTTGGGCCAAAATCTT
1 GAGATAAATCATTAAGCAAATCTAATAAAAATTTGGGCCAAAATCTT
48757485 GAGATAAATCATTAAGCAAATCTAATAAAAATTTGGGCCAAAATCTT
1 GAGATAAATCATTAAGCAAATCTAATAAAAATTTGGGCCAAAATCTT
48757532 TCATTTTAAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.47, C:0.13, G:0.13, T:0.28
Consensus pattern (47 bp):
GAGATAAATCATTAAGCAAATCTAATAAAAATTTGGGCCAAAATCTT
Found at i:48759632 original size:5 final size:5
Alignment explanation
Indices: 48759622--48759648 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
48759612 AATATTATTT
48759622 ATTAA ATTAA ATTAA ATTAA ATTAA AT
1 ATTAA ATTAA ATTAA ATTAA ATTAA AT
48759649 AATTTTCTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
ATTAA
Found at i:48763937 original size:26 final size:26
Alignment explanation
Indices: 48763842--48764035 Score: 178
Period size: 26 Copynumber: 7.3 Consensus size: 26
48763832 TTGTGATTTA
* *
48763842 CCACAGAGGCTTTCTTTTCATGGTT-TG
1 CCACAAAGGCTTTC-TTTCAT-ATTATG
* * *
48763869 CCACAAAGGCTTTCAATTCATTTTACG
1 CCACAAAGGCTTTC-TTTCATATTATG
* *
48763896 CCACAAAAGCTATTCTTTTATA-T-TG
1 CCACAAAGGCT-TTCTTTCATATTATG
48763921 CACTACAAAGGCTTTCTTTCATATTATG
1 C-C-ACAAAGGCTTTCTTTCATATTATG
* *
48763949 CCACAAAGGCTTTCTTTCAAATTACG
1 CCACAAAGGCTTTCTTTCATATTATG
* * * *
48763975 CCATAAAGGATTTCTTTCATACTACG
1 CCACAAAGGCTTTCTTTCATATTATG
* *
48764001 CCACAAAGGCTTTCTTTCATACTACG
1 CCACAAAGGCTTTCTTTCATATTATG
48764027 CCACAAAGG
1 CCACAAAGG
48764036 TTTTTCCTTA
Statistics
Matches: 141, Mismatches: 20, Indels: 13
0.81 0.11 0.07
Matches are distributed among these distances:
25 2 0.01
26 90 0.64
27 43 0.30
28 6 0.04
ACGTcount: A:0.28, C:0.25, G:0.13, T:0.34
Consensus pattern (26 bp):
CCACAAAGGCTTTCTTTCATATTATG
Done.