Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67659327
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 461372 characters in sequence are not A, C, G, or T
File 155 of 216
Found at i:48988273 original size:12 final size:12
Alignment explanation
Indices: 48988256--48988287 Score: 57
Period size: 11 Copynumber: 2.8 Consensus size: 12
48988246 AAAATAACTG
48988256 GCATTTTTTTAA
1 GCATTTTTTTAA
48988268 GCA-TTTTTTAA
1 GCATTTTTTTAA
48988279 GCATTTTTT
1 GCATTTTTT
48988288 ATTTTGTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 11 0.58
12 8 0.42
ACGTcount: A:0.22, C:0.09, G:0.09, T:0.59
Consensus pattern (12 bp):
GCATTTTTTTAA
Found at i:48988285 original size:10 final size:11
Alignment explanation
Indices: 48988260--48988288 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
48988250 TAACTGGCAT
48988260 TTTTTTAAGCA
1 TTTTTTAAGCA
48988271 TTTTTTAAGCA
1 TTTTTTAAGCA
48988282 TTTTTTA
1 TTTTTTA
48988289 TTTTGTATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.24, C:0.07, G:0.07, T:0.62
Consensus pattern (11 bp):
TTTTTTAAGCA
Found at i:48991037 original size:23 final size:23
Alignment explanation
Indices: 48991011--48991069 Score: 66
Period size: 23 Copynumber: 2.5 Consensus size: 23
48991001 CGACGTAAAG
*
48991011 ATGAAAAAGAAAAGAAGAG-AAGA
1 ATGAAAAAGAAAA-AAGAGAAAAA
*
48991034 ATGATAAAAGGAAAAAGAGAAAAA
1 ATGA-AAAAGAAAAAAGAGAAAAA
*
48991058 AGGAAAAAGAAA
1 ATGAAAAAGAAA
48991070 GAAAAAATGA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
23 16 0.53
24 14 0.47
ACGTcount: A:0.71, C:0.00, G:0.24, T:0.05
Consensus pattern (23 bp):
ATGAAAAAGAAAAAAGAGAAAAA
Found at i:48991060 original size:16 final size:17
Alignment explanation
Indices: 48991039--48991082 Score: 63
Period size: 18 Copynumber: 2.6 Consensus size: 17
48991029 GAAGAATGAT
48991039 AAAAGGAAAAAG-AGAA
1 AAAAGGAAAAAGAAGAA
48991055 AAAAGGAAAAAGAAAGAA
1 AAAAGGAAAAAG-AAGAA
*
48991073 AAAATGAAAA
1 AAAAGGAAAA
48991083 GAGGAAGGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 12 0.48
18 13 0.52
ACGTcount: A:0.77, C:0.00, G:0.20, T:0.02
Consensus pattern (17 bp):
AAAAGGAAAAAGAAGAA
Found at i:48995365 original size:39 final size:41
Alignment explanation
Indices: 48995298--48995374 Score: 104
Period size: 41 Copynumber: 1.9 Consensus size: 41
48995288 GTATCCTTTT
*
48995298 TATAAATATATATACACGTACTTATTTTTATAATTTATCTA
1 TATAAATATATACACACGTACTTATTTTTATAATTTATCTA
* * *
48995339 TATAAATATATACATACTTA-TT-TTTTTATATTTTAT
1 TATAAATATATACACACGTACTTATTTTTATAATTTAT
48995375 AATTTTCATA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
39 13 0.41
40 2 0.06
41 17 0.53
ACGTcount: A:0.38, C:0.08, G:0.01, T:0.53
Consensus pattern (41 bp):
TATAAATATATACACACGTACTTATTTTTATAATTTATCTA
Found at i:48997535 original size:19 final size:19
Alignment explanation
Indices: 48997511--48997557 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
48997501 TCTCTCTTTT
48997511 TTTGCATT-CATTCCATGCA
1 TTTGCATTACATTCCAT-CA
*
48997530 TTTGCATTACATTGCATCA
1 TTTGCATTACATTCCATCA
*
48997549 TATGCATTA
1 TTTGCATTA
48997558 GATTTTTACA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.26, C:0.21, G:0.11, T:0.43
Consensus pattern (19 bp):
TTTGCATTACATTCCATCA
Found at i:49000303 original size:8 final size:8
Alignment explanation
Indices: 49000290--49000343 Score: 74
Period size: 8 Copynumber: 6.9 Consensus size: 8
49000280 GTAGTGGACG
49000290 CAAAAAAA
1 CAAAAAAA
49000298 CAAAAAAA
1 CAAAAAAA
*
49000306 TAAAAAAA
1 CAAAAAAA
49000314 CAAAAAAA
1 CAAAAAAA
*
49000322 CAAGAAAA
1 CAAAAAAA
*
49000330 -TAAAAAA
1 CAAAAAAA
49000337 CAAAAAA
1 CAAAAAA
49000344 CCTCTACCGT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
7 5 0.13
8 34 0.87
ACGTcount: A:0.85, C:0.09, G:0.02, T:0.04
Consensus pattern (8 bp):
CAAAAAAA
Found at i:49000322 original size:24 final size:23
Alignment explanation
Indices: 49000290--49000343 Score: 90
Period size: 24 Copynumber: 2.3 Consensus size: 23
49000280 GTAGTGGACG
49000290 CAAAAAAACAAAAAAATAAAAAAA
1 CAAAAAAACAAAAAAAT-AAAAAA
*
49000314 CAAAAAAACAAGAAAATAAAAAA
1 CAAAAAAACAAAAAAATAAAAAA
49000337 CAAAAAA
1 CAAAAAA
49000344 CCTCTACCGT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
23 13 0.45
24 16 0.55
ACGTcount: A:0.85, C:0.09, G:0.02, T:0.04
Consensus pattern (23 bp):
CAAAAAAACAAAAAAATAAAAAA
Found at i:49001184 original size:93 final size:94
Alignment explanation
Indices: 49001036--49001214 Score: 243
Period size: 93 Copynumber: 1.9 Consensus size: 94
49001026 TGAATCTTGG
*
49001036 CAAAATTTGCTATCTTGATTAATTTATTCATTTCGAGCTTTGCAATCAACAAAATTTCATCTTAT
1 CAAAATTTGCTATC-T--TTAATTAATTCATTTCGAGCTTTGCAATCAACAAAATTTCATCTTAT
49001101 CCATTGTGATAATCTTTTTCATCTTATCTTAA
63 CCATTGTGATAATCTTTTTCATCTTATCTTAA
* *** * * * *
49001133 CAAAATTTGCTATC-TTAATTAATTCATTTTGAGCTTTGTTCTTAATAAAATTTCATTTTGTCCA
1 CAAAATTTGCTATCTTTAATTAATTCATTTCGAGCTTTGCAATCAACAAAATTTCATCTTATCCA
49001197 TTGTGATAATCTTTTTCA
66 TTGTGATAATCTTTTTCA
49001215 AGCATTTTTC
Statistics
Matches: 73, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
93 59 0.81
97 14 0.19
ACGTcount: A:0.29, C:0.16, G:0.08, T:0.47
Consensus pattern (94 bp):
CAAAATTTGCTATCTTTAATTAATTCATTTCGAGCTTTGCAATCAACAAAATTTCATCTTATCCA
TTGTGATAATCTTTTTCATCTTATCTTAA
Found at i:49001720 original size:24 final size:24
Alignment explanation
Indices: 49001688--49001745 Score: 89
Period size: 24 Copynumber: 2.4 Consensus size: 24
49001678 ATGTCCCAAA
*
49001688 ATTATAGTGGACTGAACCTTAAAG
1 ATTACAGTGGACTGAACCTTAAAG
* *
49001712 ATTACAGTGGATTGAACTTTAAAG
1 ATTACAGTGGACTGAACCTTAAAG
49001736 ATTACAGTGG
1 ATTACAGTGG
49001746 GGGCAATCCG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.36, C:0.10, G:0.22, T:0.31
Consensus pattern (24 bp):
ATTACAGTGGACTGAACCTTAAAG
Found at i:49002006 original size:44 final size:44
Alignment explanation
Indices: 49001932--49002909 Score: 271
Period size: 44 Copynumber: 22.7 Consensus size: 44
49001922 CAGATCGCAT
* *
49001932 CCAATCTTATCTTCC-TGAAGTTGTAATGGAGCAGACAAAAGAAA
1 CCAATCTTATC-TCCTTGAAGTTGCAGTGGAGCAGACAAAAGAAA
* * ** *
49001976 CCAATCCTATCTCCTTGAAGTTGCAGTGGAGTAGA-TTAA-AAC
1 CCAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGACAAAAGAAA
* * *
49002018 CTCAGATCTTATCT-CTCTGAAGTTGCAGTAGAGCAGATC----GCAT
1 C-CA-ATCTTATCTCCT-TGAAGTTGCAGTGGAGCAGA-CAAAAGAAA
* * * * * * *
49002061 CCAGTCTTATCTCCCTAAAGTTACAGCGGAACAGACAGAAGAAA
1 CCAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGACAAAAGAAA
* * * * *
49002105 CTAATCCTATCTACTTGAAGTTGCAGTGAAGC-GA-ATTAAA-ACCA
1 CCAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGACA--AAAGA-AA
* ** * *
49002149 CAAATCTTATCT-CTCTGAAGTTGCAGTAAAGCAGATC----GCAT
1 CCAATCTTATCTCCT-TGAAGTTGCAGTGGAGCAGA-CAAAAGAAA
* *
49002190 CCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-AAAAGAAA
1 CCAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGACAAAAGAAA
* * * * ** *
49002233 CCAATCCTATCTCCCTGAAGTTGCAGTAGAGCGGA-TTAA-AAC
1 CCAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGACAAAAGAAA
* * * * *
49002275 CACAGATCTTATCT-CTCTGAAGTTACAGTAGAGTAGATC----GCAT
1 C-CA-ATCTTATCTCCT-TGAAGTTGCAGTGGAGCAGA-CAAAAGAAA
* * **
49002318 CCAGTCTTATCT-CTCTGAAGTTACAGCAGAGCAGACAAAAGAAA
1 CCAATCTTATCTCCT-TGAAGTTGCAGTGGAGCAGACAAAAGAAA
* * * * * ** *
49002362 CCAATCTTATCTCCCTAAAATTACAGTGGAGCGGA-TTAA-AAC
1 CCAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGACAAAAGAAA
* * * * *
49002404 CACAGATCTTATCT-CTCTGAAGTTGCAGTAGAGCATAC---CGCAT
1 C-CA-ATCTTATCTCCT-TGAAGTTGCAGTGGAGCAGACAAAAGAAA
* * * *
49002447 CCAGTCTTATCT-CTCTAAAGTTGCAGTAGAACAGACAAAAGAAA
1 CCAATCTTATCTCCT-TGAAGTTGCAGTGGAGCAGACAAAAGAAA
* * * * * **
49002491 TCAATCCTATCTTCC-TGAAGTTACAGTGGAGCGGATTAAAA-CCA
1 CCAATCTTATC-TCCTTGAAGTTGCAGTGGAGCAGA-CAAAAGAAA
* * * * * *
49002535 CAAATCTCATCT-CTCTGAAGTTGTAGT--AG-A-ACAAATCGCAT
1 CCAATCTTATCTCCT-TGAAGTTGCAGTGGAGCAGACAAA-AGAAA
* * *
49002576 CCAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACAAAAGAAA
1 CCAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGACAAAAGAAA
* * * * * ** *
49002620 CCAATCCTATCTCCCTAAAGTTGCAGTAGAGTAGA-TTAA-AAC
1 CCAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGACAAAAGAAA
* * * *
49002662 CACAGATCTTATCT-CTCTGAAGTTGTAGTAGAGCAGATC----GCAT
1 C-CA-ATCTTATCTCCT-TGAAGTTGCAGTGGAGCAGA-CAAAAGAAA
* * * *
49002705 CCAGTCTTATCTCCCTGAAGTTGCAGCGGAGCAGACAGAAGAAA
1 CCAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGACAAAAGAAA
* * * * * ** *
49002749 TCAATCCTATCTCCCTGAAGTTACAGTGGAGCGGA-TTAA-AAC
1 CCAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGACAAAAGAAA
* * *
49002791 CACAGATCTTATCT-CTCTGAAGTTGCAGTAGAGCAGATC----GCAT
1 C-CA-ATCTTATCTCCT-TGAAGTTGCAGTGGAGCAGA-CAAAAGAAA
* * * ** **
49002834 CCAGTCTTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGCCA
1 CCAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGACAAAAGAAA
* * *
49002878 CTAATCCTATCTCCCTGAAGTTGCAGTGGAGC
1 CCAATCTTATCTCCTTGAAGTTGCAGTGGAGC
49002910 GGATTAAAAC
Statistics
Matches: 685, Mismatches: 171, Indels: 156
0.68 0.17 0.15
Matches are distributed among these distances:
39 3 0.00
40 5 0.01
41 180 0.26
42 33 0.05
43 80 0.12
44 370 0.54
45 13 0.02
46 1 0.00
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.25
Consensus pattern (44 bp):
CCAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGACAAAAGAAA
Found at i:49002716 original size:85 final size:85
Alignment explanation
Indices: 49001854--49002919 Score: 444
Period size: 85 Copynumber: 12.4 Consensus size: 85
49001844 GCTACAATTA
** *
49001854 TATCTCCCTGAAGTTGCAGGGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTA
1 TATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTA
* *
49001919 GAGCAGATCGCATCCAATCT
66 GAGCAGATCGAATCCAGTCT
* * * * * ** *
49001939 TATCTTCCTGAAGTTGTAATGGAGCAGA-CAAAAGAAACCA-ATCCTATCTC-CTTGAAGTTGCA
1 TATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAA-CCA-CAGATCTTATCTCTC-TGAAGTTGCA
* * ** *
49002001 GTGGAGTAGATTAAAACCTCAGATCT
63 GTAGAGCAGA-TCGAATC-CAG-TCT
* *** * * * *
49002027 TATCTCTCTGAAGTTGCAGTAGAGCAGA-TCGCATC-CAG-TCTTATCTCCCTAAAGTTACAGCG
1 TATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAACCACAGATCTTATCTCTCTGAAGTT---GCA
* * * * * * *
49002089 GAACAGACAGA-AGAAACTAATCC
63 GTAGAG-CAGATCGAATCCAGTCT
* * *
49002112 TATCTACTTGAAGTTGCAGT-GAAGC-GAATTAAAACCACAAATCTTATCTCTCTGAAGTTGCAG
1 TATCTCCCTGAAGTTGCAGTAG-AGCAG-ATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAG
* *
49002175 TAAAGCAGATCGCATCCAGTCT
64 TAGAGCAGATCGAATCCAGTCT
* ** * * *
49002197 TATCTCCCTGAAGTTGCAGTGGAGCAGAAAAAGAAAC-CA-ATCCTATCTCCCTGAAGTTGCAGT
1 TATCTCCCTGAAGTTGCAGTAGAGCAGATTAA-AACCACAGATCTTATCTCTCTGAAGTTGCAGT
* ** *
49002260 AGAGCGGATTAAAACCACAGATCT
65 AGAGCAGA-TCGAATC-CAG-TCT
* * * *** * * *
49002284 TATCTCTCTGAAGTTACAGTAGAGTAGA-TCGCATC-CAG-TCTTATCTCTCTGAAGTTACAGCA
1 TATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTA
* *
49002346 GAGCAGA-CAAAAGAAACCAATCT
66 GAGCAGATC----GAATCCAGTCT
* * * * *
49002369 TATCTCCCTAAAATTACAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTA
1 TATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTA
* * *
49002434 GAGCATACCGCATCCAGTCT
66 GAGCAGATCGAATCCAGTCT
* * * * ** * *
49002454 TATCTCTCTAAAGTTGCAGTAGAACAGA-CAAAAGAAATCA-ATCCTATCT-TCCTGAAGTTACA
1 TATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAA-CCA-CAGATCTTATCTCT-CTGAAGTTGCA
* * ** * *
49002516 GTGGAGCGGATTAAAACCACAAATCT
63 GTAGAGCAGA-TCGAATC-C-AGTCT
* * * * * *** * * * *
49002542 CATCTCTCTGAAGTTGTAGTAGAACA-AATCGCATC-CAG-TCTTATCTCCCTAAAGTTGCAGTG
1 TATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTA
* * *
49002604 GAGCAGA-CAAAAGAAACCAATCC
66 GAGCAGATC----GAATCCAGTCT
* * *
49002627 TATCTCCCTAAAGTTGCAGTAGAGTAGATTAAAACCACAGATCTTATCTCTCTGAAGTTGTAGTA
1 TATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTA
*
49002692 GAGCAGATCGCATCCAGTCT
66 GAGCAGATCGAATCCAGTCT
** * * * * *
49002712 TATCTCCCTGAAGTTGCAGCGGAGCAGA-CAGAAGA-AATCA-ATCCTATCTCCCTGAAGTTACA
1 TATCTCCCTGAAGTTGCAGTAGAGCAGATTA-AA-ACCA-CAGATCTTATCTCTCTGAAGTTGCA
* * ** *
49002774 GTGGAGCGGATTAAAACCACAGATCT
63 GTAGAGCAGA-TCGAATC-CAG-TCT
* *** * * * *
49002800 TATCTCTCTGAAGTTGCAGTAGAGCAGA-TCGCATC-CAG-TCTTATCTCCCTGAAGTTACAGTG
1 TATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTA
* * *
49002862 GAGCAGA-CTGAAGCCACTAATCC
66 GAGCAGATC-GAA-TC-C-AGTCT
* *
49002885 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAC
1 TATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAAC
49002920 GATGAATCCT
Statistics
Matches: 720, Mismatches: 199, Indels: 123
0.69 0.19 0.12
Matches are distributed among these distances:
84 47 0.07
85 415 0.58
86 42 0.06
87 52 0.07
88 159 0.22
89 5 0.01
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.25
Consensus pattern (85 bp):
TATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTA
GAGCAGATCGAATCCAGTCT
Found at i:49002928 original size:44 final size:44
Alignment explanation
Indices: 49002197--49002931 Score: 288
Period size: 44 Copynumber: 17.1 Consensus size: 44
49002187 CATCCAGTCT
** *
49002197 TATCTCCCTGAAGTTGCAGTGGAGCAGA--AAAAGAAACCAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAA-CCATCAATCC
* * *
49002240 TATCTCCCTGAAGTTGCAGTAGAGCGGATTAAAACCA-CAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCATCA-ATCC
* * * * * *
49002284 TATCTCTCTGAAGTTACAGT--AG-AG--TAGATCGCATCCAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAAC-CAT-CAATCC
* * ** * ** * *
49002325 TATCTCTCTGAAGTTACAGCAGAGCAGA-CAAAAGAAACCAATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAA-CCATCAATCC
* * * * *
49002369 TATCTCCCTAAAATTACAGTGGAGCGGATTAAAACCA-CAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCATCA-ATCC
* * * * *
49002413 TATCTCTCTGAAGTTGCAGTAGAGC--A-T--ACCGCATCCAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAAC-CAT-CAATCC
* * * * * **
49002454 TATCTCTCTAAAGTTGCAGTAGAACAGA-CAAAAGAAATCAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAA-CCATCAATCC
* * *
49002498 TATCTTCCTGAAGTTACAGTGGAGCGGATTAAAACCA-CAAAT-C
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCATC-AATCC
* * * * * *
49002541 TCATCTCTCTGAAGTTGTAGT--AG-A-A-CAAATCGCATCCAGTCT
1 T-ATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAAC-CAT-CAATCC
* * ** *
49002583 TATCTCCCTAAAGTTGCAGTGGAGCAGA-CAAAAGAAACCAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAA-CCATCAATCC
* * * *
49002627 TATCTCCCTAAAGTTGCAGTAGAGTAGATTAAAACCA-CAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCATCA-ATCC
* * * * *
49002671 TATCTCTCTGAAGTTGTAGTAGAGCAGA-T----CGCATCCAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAAC-CAT-CAATCC
* * *
49002712 TATCTCCCTGAAGTTGCAGCGGAGCAGA-CAGAAGA-AATCAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTA-AA-ACCATCAATCC
* * *
49002756 TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAACCA-CAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCATCA-ATCC
* * * *
49002800 TATCTCTCTGAAGTTGCAGTAGAGCAGA-T----CGCATCCAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAAC-CAT-CAATCC
* * * *
49002841 TATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGCCA-CTAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCATC-AATCC
* * *
49002885 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACGATGAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCATCAATCC
49002929 TAT
1 TAT
49002932 ACCTTTGAAG
Statistics
Matches: 522, Mismatches: 113, Indels: 113
0.70 0.15 0.15
Matches are distributed among these distances:
39 12 0.02
40 11 0.02
41 123 0.24
42 16 0.03
43 46 0.09
44 280 0.54
45 33 0.06
46 1 0.00
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.25
Consensus pattern (44 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCATCAATCC
Found at i:49002947 original size:129 final size:129
Alignment explanation
Indices: 49001854--49002919 Score: 1567
Period size: 129 Copynumber: 8.3 Consensus size: 129
49001844 GCTACAATTA
*
49001854 TATCTCCCTGAAGTTGCAGGGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTA
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTA
* * * *
49001919 GAGCAGATCGCATCCAATCTTATCTTCCTGAAGTTGTAATGGAGCAGACAAAAGAAACCAATCC
66 GAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAGAAACCAATCC
* ** *
49001983 TATCTCCTTGAAGTTGCAGTGGAGTAGATTAAAACCTCAGATCTTATCTCTCTGAAGTTGCAGTA
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTA
* * * * * *
49002048 GAGCAGATCGCATCCAGTCTTATCTCCCTAAAGTTACAGCGGAACAGACAGAAGAAACTAATCC
66 GAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAGAAACCAATCC
* * * * *
49002112 TATCTACTTGAAGTTGCAGTGAAGCGAATTAAAACCACAAATCTTATCTCTCTGAAGTTGCAGTA
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTA
*
49002177 AAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-AAAAGAAACCAATCC
66 GAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAGAAACCAATCC
* *
49002240 TATCTCCCTGAAGTTGCAGTAGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTACAGTA
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTA
* * * ** *
49002305 GAGTAGATCGCATCCAGTCTTATCTCTCTGAAGTTACAGCAGAGCAGACAAAAGAAACCAATCT
66 GAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAGAAACCAATCC
* * *
49002369 TATCTCCCTAAAATTACAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTA
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTA
* * * * * * *
49002434 GAGCATACCGCATCCAGTCTTATCTCTCTAAAGTTGCAGTAGAACAGACAAAAGAAATCAATCC
66 GAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAGAAACCAATCC
* * * * *
49002498 TATCTTCCTGAAGTTACAGTGGAGCGGATTAAAACCACAAATCTCATCTCTCTGAAGTTGTAGTA
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTA
* * *
49002563 GAACAAATCGCATCCAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACAAAAGAAACCAATCC
66 GAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAGAAACCAATCC
* * ** *
49002627 TATCTCCCTAAAGTTGCAGTAGAGTAGATTAAAACCACAGATCTTATCTCTCTGAAGTTGTAGTA
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTA
* * *
49002692 GAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGCGGAGCAGACAGAAGAAATCAATCC
66 GAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAGAAACCAATCC
*
49002756 TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTA
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTA
* ** ** *
49002821 GAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGCCACTAATCC
66 GAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAGAAACCAATCC
49002885 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAC
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAC
49002920 GATGAATCCT
Statistics
Matches: 838, Mismatches: 98, Indels: 2
0.89 0.10 0.00
Matches are distributed among these distances:
128 113 0.13
129 725 0.87
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.25
Consensus pattern (129 bp):
TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTA
GAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAGAAACCAATCC
Found at i:49004818 original size:23 final size:24
Alignment explanation
Indices: 49004792--49004838 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
49004782 ATATATATAC
*
49004792 ACATATATACATAT-TTAATATTT
1 ACATACATACATATGTTAATATTT
* *
49004815 ACATACATATATATGTTTATATTT
1 ACATACATACATATGTTAATATTT
49004839 TTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 12 0.60
24 8 0.40
ACGTcount: A:0.40, C:0.09, G:0.02, T:0.49
Consensus pattern (24 bp):
ACATACATACATATGTTAATATTT
Found at i:49008626 original size:28 final size:28
Alignment explanation
Indices: 49008591--49008660 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
49008581 AATTCAACAC
49008591 AGGCTATTCTTTTCAGAGTTCGCCACAA
1 AGGCTATTCTTTTCAGAGTTCGCCACAA
49008619 AGGCTATTCTTTTCAGAGTTCGCCACAA
1 AGGCTATTCTTTTCAGAGTTCGCCACAA
**
49008647 AGATTATTCTTTTC
1 AGGCTATTCTTTTC
49008661 TATTGTGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.24, C:0.23, G:0.16, T:0.37
Consensus pattern (28 bp):
AGGCTATTCTTTTCAGAGTTCGCCACAA
Found at i:49009883 original size:13 final size:13
Alignment explanation
Indices: 49009865--49009917 Score: 52
Period size: 13 Copynumber: 3.8 Consensus size: 13
49009855 TAAACCAACT
*
49009865 AAAAAAATTAAGA
1 AAAAAAATAAAGA
49009878 AAAAAAATAAAGA
1 AAAAAAATAAAGA
* *
49009891 TTGAAAAAATAAATA
1 --AAAAAAATAAAGA
49009906 AATAAAAATAAA
1 AA-AAAAATAAA
49009918 AAAGCAAAAC
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
13 13 0.39
14 9 0.27
15 11 0.33
ACGTcount: A:0.77, C:0.00, G:0.06, T:0.17
Consensus pattern (13 bp):
AAAAAAATAAAGA
Found at i:49013143 original size:22 final size:22
Alignment explanation
Indices: 49013095--49013144 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 22
49013085 AAACCACAAA
49013095 TTTTTTTGTTGTTTTTTACTCT
1 TTTTTTTGTTGTTTTTTACTCT
* *
49013117 CTTTTTTG-TGTTATTTTA-TTT
1 TTTTTTTGTTGTT-TTTTACTCT
49013138 TTTTTTT
1 TTTTTTT
49013145 CACTATTTTG
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
21 12 0.50
22 12 0.50
ACGTcount: A:0.06, C:0.06, G:0.08, T:0.80
Consensus pattern (22 bp):
TTTTTTTGTTGTTTTTTACTCT
Found at i:49018157 original size:7 final size:7
Alignment explanation
Indices: 49018145--49018176 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
49018135 GTTTTAATTG
49018145 AATTTTT
1 AATTTTT
49018152 AATTTTT
1 AATTTTT
49018159 AATTTTT
1 AATTTTT
49018166 AATTTTT
1 AATTTTT
49018173 AATT
1 AATT
49018177 GATATTTATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (7 bp):
AATTTTT
Found at i:49024459 original size:24 final size:24
Alignment explanation
Indices: 49024404--49024463 Score: 70
Period size: 23 Copynumber: 2.5 Consensus size: 24
49024394 GTAGAACGAT
*
49024404 GATGGTGACCTAGTGGACGTCGGAC
1 GATGGTGA-CTAGTGGACCTCGGAC
*
49024429 GGT-GTGACTAGTGGACACT-GGAC
1 GATGGTGACTAGTGGAC-CTCGGAC
49024452 GATGGTGACTAG
1 GATGGTGACTAG
49024464 CAATAGGGAT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
23 15 0.50
24 13 0.43
25 2 0.07
ACGTcount: A:0.22, C:0.17, G:0.40, T:0.22
Consensus pattern (24 bp):
GATGGTGACTAGTGGACCTCGGAC
Found at i:49025999 original size:14 final size:14
Alignment explanation
Indices: 49025980--49026017 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
49025970 AATTTTGTAT
49025980 TTTATATATAAAAA
1 TTTATATATAAAAA
* *
49025994 TTTATAAATAATAA
1 TTTATATATAAAAA
49026008 TTTA-ATATAA
1 TTTATATATAA
49026018 TTTAATATAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
13 5 0.24
14 16 0.76
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
TTTATATATAAAAA
Found at i:49029444 original size:44 final size:43
Alignment explanation
Indices: 49029381--49029692 Score: 152
Period size: 44 Copynumber: 6.9 Consensus size: 43
49029371 GATCTACTCT
* * *
49029381 ACTGTAA-CTTCAGAGAGATAAGATCCTTTGTTTTAATCCGCTCC
1 ACTGTAATC-TCAGGGAGATAAGAT-CTTTGCTTCAATCCGCTCC
* * *
49029425 ACTGTAATCTCAGGGAGATAGGAT-TACTAGCTTCAATCTGCTCC
1 ACTGTAATCTCAGGGAGATAAGATCT--TTGCTTCAATCCGCTCC
** * *
49029469 GTTATAATCACAGGGAGATAAGAT-TTCTGGCTTCAATCTGATGCGATCTACTC
1 ACTGTAATCTCAGGGAGATAAGATCTT-T-GCTTCAATC-----CG--CT-C-C
* * *
49029522 TACTGTAA-CTTCAGAGAGATAAGATCCTTTGTTTTAATCCGCTCC
1 -ACTGTAATC-TCAGGGAGATAAGAT-CTTTGCTTCAATCCGCTCC
* ** * *
49029567 ACTGTAATCTTAGGGAGATAAGAT-TACAAGCTTCAATCTGCTTC
1 ACTGTAATCTCAGGGAGATAAGATCT--TTGCTTCAATCCGCTCC
* **
49029611 GCTGTAATCTCAGGGAGATAAGAT-TTCTGGCTTCAATCTACTCC
1 ACTGTAATCTCAGGGAGATAAGATCTT-T-GCTTCAATCCGCTCC
* *
49029655 GCTGTAATCTCAGAGAGATAAGAT-TTCTGGCTTCAATC
1 ACTGTAATCTCAGGGAGATAAGATCTT-T-GCTTCAATC
49029693 TGATGTGATC
Statistics
Matches: 210, Mismatches: 35, Indels: 46
0.72 0.12 0.16
Matches are distributed among these distances:
42 3 0.01
44 166 0.79
45 3 0.01
46 1 0.00
47 2 0.01
49 3 0.01
51 2 0.01
52 1 0.00
53 2 0.01
54 24 0.11
55 1 0.00
56 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (43 bp):
ACTGTAATCTCAGGGAGATAAGATCTTTGCTTCAATCCGCTCC
Found at i:49029601 original size:142 final size:142
Alignment explanation
Indices: 49029339--49029649 Score: 543
Period size: 142 Copynumber: 2.2 Consensus size: 142
49029329 GCACCGCTTG
*
49029339 AGGGAG-TAAGATTCCTGGCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAG
1 AGGGAGATAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAG
* *
49029403 ATCCTTTGTTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTC
66 ATCCTTTGTTTTAATCCGCTCCACTGTAATCTCAGGGAGATAAGATTACAAGCTTCAATCTGCTC
*
49029468 CGTTATAATCAC
131 CGCTATAATCAC
49029480 AGGGAGATAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAG
1 AGGGAGATAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAG
* *
49029545 ATCCTTTGTTTTAATCCGCTCCACTGTAATCTTAGGGAGATAAGATTACAAGCTTCAATCTGCTT
66 ATCCTTTGTTTTAATCCGCTCCACTGTAATCTCAGGGAGATAAGATTACAAGCTTCAATCTGCTC
* *
49029610 CGCTGTAATCTC
131 CGCTATAATCAC
49029622 AGGGAGATAAGATTTCTGGCTTCAATCT
1 AGGGAGATAAGATTTCTGGCTTCAATCT
49029650 ACTCCGCTGT
Statistics
Matches: 161, Mismatches: 8, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
141 6 0.04
142 155 0.96
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (142 bp):
AGGGAGATAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAG
ATCCTTTGTTTTAATCCGCTCCACTGTAATCTCAGGGAGATAAGATTACAAGCTTCAATCTGCTC
CGCTATAATCAC
Found at i:49029627 original size:186 final size:186
Alignment explanation
Indices: 49029426--49029821 Score: 605
Period size: 186 Copynumber: 2.1 Consensus size: 186
49029416 ATCCGCTCCA
* * * *
49029426 CTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGTTATAATCACAGGGAGATAAG
1 CTGTAATCTCAGGGAGATAAGATTACTAGCTTCAATCTACTCCGCTATAATCACAGAGAGATAAG
* *
49029491 ATTTCTGGCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTGTTT
66 ATTTCTGGCTTCAATCTGATGCGATCGACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTT
* *
49029556 TAATCCGCTCCACTGTAATCTTAGGGAGATAAGATTACAAGCTTCAATCTGCT-TCG
131 TAATCCGCTCCACTATAATCTCAGGGAGATAAGATTACAAGCTTCAATCTGCTCT-G
* * * *
49029612 CTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAG
1 CTGTAATCTCAGGGAGATAAGATTACTAGCTTCAATCTACTCCGCTATAATCACAGAGAGATAAG
* *
49029677 ATTTCTGGCTTCAATCTGATGTGATCGACTCTATTGTAACTTCAGAGAGATAAGATCCTTTATTT
66 ATTTCTGGCTTCAATCTGATGCGATCGACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTT
* * *
49029742 TAATTCGCTCCACTATAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCTG
131 TAATCCGCTCCACTATAATCTCAGGGAGATAAGATTACAAGCTTCAATCTGCTCTG
* *
49029798 TTGTAATCTCAGGGAGATGAGATT
1 CTGTAATCTCAGGGAGATAAGATT
49029822 TCTTCTTCAG
Statistics
Matches: 190, Mismatches: 19, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
186 189 0.99
187 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Consensus pattern (186 bp):
CTGTAATCTCAGGGAGATAAGATTACTAGCTTCAATCTACTCCGCTATAATCACAGAGAGATAAG
ATTTCTGGCTTCAATCTGATGCGATCGACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTT
TAATCCGCTCCACTATAATCTCAGGGAGATAAGATTACAAGCTTCAATCTGCTCTG
Found at i:49029693 original size:44 final size:44
Alignment explanation
Indices: 49029563--49029693 Score: 190
Period size: 44 Copynumber: 3.0 Consensus size: 44
49029553 TTTTAATCCG
* * * ** *
49029563 CTCCACTGTAATCTTAGGGAGATAAGATTACAAGCTTCAATCTG
1 CTCCGCTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTA
*
49029607 CTTCGCTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTA
1 CTCCGCTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTA
*
49029651 CTCCGCTGTAATCTCAGAGAGATAAGATTTCTGGCTTCAATCT
1 CTCCGCTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCT
49029694 GATGTGATCG
Statistics
Matches: 78, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 78 1.00
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.32
Consensus pattern (44 bp):
CTCCGCTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTA
Found at i:49031790 original size:30 final size:29
Alignment explanation
Indices: 49031754--49031830 Score: 93
Period size: 31 Copynumber: 2.6 Consensus size: 29
49031744 TCATATTTTA
49031754 TTTTGACTTTGATTGATTTC-TCTTTTTTGC
1 TTTTGACTTTGATT--TTTCTTCTTTTTTGC
*
49031784 TTTTGACTTTGATTTTTCATTTCTTTTTTGT
1 TTTTGACTTTGATTTTTC--TTCTTTTTTGC
*
49031815 TTTTGATTTTGATTTT
1 TTTTGACTTTGATTTT
49031831 GATTTTTGAT
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
28 4 0.10
30 14 0.33
31 24 0.57
ACGTcount: A:0.10, C:0.09, G:0.12, T:0.69
Consensus pattern (29 bp):
TTTTGACTTTGATTTTTCTTCTTTTTTGC
Found at i:49031819 original size:37 final size:36
Alignment explanation
Indices: 49031777--49031846 Score: 104
Period size: 37 Copynumber: 1.9 Consensus size: 36
49031767 TGATTTCTCT
*
49031777 TTTTTGCTTTTGACTTTGATTTTTCATTTCTTTTTTG
1 TTTTTGATTTTGACTTTGATTTTTCATTT-TTTTTTG
* *
49031814 TTTTTGATTTTGATTTTGATTTTTGATTTTTTT
1 TTTTTGATTTTGACTTTGATTTTTCATTTTTTT
49031847 ATCAGAATCA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
36 4 0.13
37 26 0.87
ACGTcount: A:0.10, C:0.06, G:0.11, T:0.73
Consensus pattern (36 bp):
TTTTTGATTTTGACTTTGATTTTTCATTTTTTTTTG
Found at i:49031824 original size:7 final size:7
Alignment explanation
Indices: 49031791--49031844 Score: 55
Period size: 7 Copynumber: 8.4 Consensus size: 7
49031781 TGCTTTTGAC
49031791 TTTGATT
1 TTTGATT
*
49031798 TTTCATT
1 TTTGATT
*
49031805 TCT--TT
1 TTTGATT
49031810 TTTG-TT
1 TTTGATT
49031816 TTTGA-T
1 TTTGATT
49031822 TTTGA-T
1 TTTGATT
49031828 TTTGATT
1 TTTGATT
49031835 TTTGATT
1 TTTGATT
49031842 TTT
1 TTT
49031845 TTATCAGAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
5 4 0.10
6 18 0.44
7 19 0.46
ACGTcount: A:0.11, C:0.04, G:0.11, T:0.74
Consensus pattern (7 bp):
TTTGATT
Found at i:49031824 original size:12 final size:12
Alignment explanation
Indices: 49031778--49031843 Score: 53
Period size: 12 Copynumber: 5.3 Consensus size: 12
49031768 GATTTCTCTT
*
49031778 TTTTGCTTTTGA
1 TTTTGATTTTGA
* *
49031790 CTTTGATTTTTCA
1 TTTTGA-TTTTGA
* *
49031803 TTTCT-TTTTTGT
1 TTT-TGATTTTGA
49031815 TTTTGATTTTGA
1 TTTTGATTTTGA
49031827 TTTTGATTTTTGA
1 TTTTGA-TTTTGA
49031840 TTTT
1 TTTT
49031844 TTTATCAGAA
Statistics
Matches: 41, Mismatches: 9, Indels: 7
0.72 0.16 0.12
Matches are distributed among these distances:
11 1 0.02
12 22 0.54
13 17 0.41
14 1 0.02
ACGTcount: A:0.11, C:0.06, G:0.12, T:0.71
Consensus pattern (12 bp):
TTTTGATTTTGA
Found at i:49039315 original size:100 final size:100
Alignment explanation
Indices: 49039130--49039800 Score: 889
Period size: 100 Copynumber: 6.7 Consensus size: 100
49039120 ATTTGCTACC
* * * ** * * * *
49039130 TCAAGTCTACTCCACTGCACCGCCATGGAAGTAAGATAAGTCGTTATGGCTTCAATCTTTCTAAT
1 TCAA-TCTGCTCCACTACACCGCCAGGGAAGTAAGATCCGCCATTGTGGCTTCAATCTTTTTAAT
*
49039195 TGCGCTGTCGGAGAAACCAGATCCGCCGTTGTGACT
65 TGCGCTGTCGAAGAAACCAGATCCGCCGTTGTGACT
* ** * *
49039231 TCAATCTGCTACACTGTACCGCCAGGGAAGTAAGGTTCGCCATTGTGGCTTCAATCTTTTTAATT
1 TCAATCTGCTCCACTACACCGCCAGGGAAGTAAGATCCGCCATTGTGGCTTCAATCTTTTTAATT
*
49039296 GCGTTGTCGAAGAAACCAGATCCGCCGTTGTGACT
66 GCGCTGTCGAAGAAACCAGATCCGCCGTTGTGACT
* * *
49039331 TCAATCTGCTCCACTACACCGCCAGGGAAATAAGATCTGCTATTGTGGCTTCAAAAAAT-TTTTT
1 TCAATCTGCTCCACTACACCGCCAGGGAAGTAAGATCCGCCATTGTGGCTTC----AATCTTTTT
** *
49039395 AATTGCGCTGTCGGGGAAACCAAATCCGCCGTTGTGACT
62 AATTGCGCTGTCGAAGAAACCAGATCCGCCGTTGTGACT
* * ** * *
49039434 TCAATCTGCTCCACTGCACCGCCAGGGAAGTAAGATCTGCTGTTGTGGCTTCAAACTTTTAAATT
1 TCAATCTGCTCCACTACACCGCCAGGGAAGTAAGATCCGCCATTGTGGCTTCAATCTTTTTAATT
*
49039499 GCGCTGTC-AGGGAAACCAGATCCGCCGTTGTGACT
66 GCGCTGTCGA-AGAAACCAGATCCGCCGTTGTGACT
* *
49039534 TCAATCTGCTCCACTACACAGCCAGGGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAATT
1 TCAATCTGCTCCACTACACCGCCAGGGAAGTAAGATCCGCCATTGTGGCTTCAATCTTTTTAATT
*
49039599 GCGCTGTCGAAGAAACCAGATCCGCCGTTGTGCCT
66 GCGCTGTCGAAGAAACCAGATCCGCCGTTGTGACT
*
49039634 TCAATCTGCTCTACTACACCGCCAGGGAAGTAAGATCCGCCATTGTGGCTTCAATCTTTTTAATT
1 TCAATCTGCTCCACTACACCGCCAGGGAAGTAAGATCCGCCATTGTGGCTTCAATCTTTTTAATT
** *
49039699 GCG-TAGTCGGGGAAACCAGATCCGCTGTTGTGACT
66 GCGCT-GTCGAAGAAACCAGATCCGCCGTTGTGACT
* * * * *
49039734 TTAATATGCTCCACTGCACTGCCAGGGAAGTAAGATCCGCCATTGTGGCTTCAATATTTTTAATT
1 TCAATCTGCTCCACTACACCGCCAGGGAAGTAAGATCCGCCATTGTGGCTTCAATCTTTTTAATT
49039799 GC
66 GC
49039801 AATGCCAAAG
Statistics
Matches: 509, Mismatches: 53, Indels: 17
0.88 0.09 0.03
Matches are distributed among these distances:
99 3 0.01
100 409 0.80
101 5 0.01
103 89 0.17
104 3 0.01
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.29
Consensus pattern (100 bp):
TCAATCTGCTCCACTACACCGCCAGGGAAGTAAGATCCGCCATTGTGGCTTCAATCTTTTTAATT
GCGCTGTCGAAGAAACCAGATCCGCCGTTGTGACT
Found at i:49039367 original size:50 final size:50
Alignment explanation
Indices: 49039213--49039788 Score: 282
Period size: 50 Copynumber: 11.5 Consensus size: 50
49039203 CGGAGAAACC
* * * *
49039213 AGATCCGCCGTTGTGACTTCAATCTGCT-ACACTGTACCGCCAGGGAAGTA
1 AGATCCGCCGTTGTGGCTTCAATCTGCTCA-ACTGCACTGCCAGGGAAATA
* * * ** * * ** * * **
49039263 AGGTTCGCCATTGTGGCTTCAATCTTTTTAATTGCGTTGTC-GAAGAAACC
1 AGATCCGCCGTTGTGGCTTCAATCTGCTCAACTGCACTGCCAG-GGAAATA
* * * *
49039313 AGATCCGCCGTTGTGACTTCAATCTGCTCCACTACACCGCCAGGGAAATA
1 AGATCCGCCGTTGTGGCTTCAATCTGCTCAACTGCACTGCCAGGGAAATA
* ** ** * * * * * *
49039363 AGATCTGCTATTGTGGCTTCAAAAAAT-TTTTTAATTGCGCTGTCGGGGAAACCA
1 AGATCCGCCGTTGTGGCTTC----AATCTGCTCAACTGCACTGCCAGGGAAA-TA
* * * *
49039417 A-ATCCGCCGTTGTGACTTCAATCTGCTCCACTGCACCGCCAGGGAAGTA
1 AGATCCGCCGTTGTGGCTTCAATCTGCTCAACTGCACTGCCAGGGAAATA
* * * ** * * * * **
49039466 AGATCTGCTGTTGTGGCTTCAAACTTTTAAATTGCGCTGTCAGGGAAACC
1 AGATCCGCCGTTGTGGCTTCAATCTGCTCAACTGCACTGCCAGGGAAATA
* * * * *
49039516 AGATCCGCCGTTGTGACTTCAATCTGCTCCACTACACAGCCAGGGAAGTA
1 AGATCCGCCGTTGTGGCTTCAATCTGCTCAACTGCACTGCCAGGGAAATA
** * * * * * **
49039566 AGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCGCTGTC-GAAGAAACC
1 AGATCCGCCGTTGTGGCTTCAATCTGCTCAACTGCACTGCCAG-GGAAATA
* * * * *
49039616 AGATCCGCCGTTGTGCCTTCAATCTGCTCTACTACACCGCCAGGGAAGTA
1 AGATCCGCCGTTGTGGCTTCAATCTGCTCAACTGCACTGCCAGGGAAATA
* ** * * * * * **
49039666 AGATCCGCCATTGTGGCTTCAATCTTTTTAATTGC-GTAGTCGGGGAAACC
1 AGATCCGCCGTTGTGGCTTCAATCTGCTCAACTGCACT-GCCAGGGAAATA
* * * * * *
49039716 AGATCCGCTGTTGTGACTTTAATATGCTCCACTGCACTGCCAGGGAAGTA
1 AGATCCGCCGTTGTGGCTTCAATCTGCTCAACTGCACTGCCAGGGAAATA
*
49039766 AGATCCGCCATTGTGGCTTCAAT
1 AGATCCGCCGTTGTGGCTTCAAT
49039789 ATTTTTAATT
Statistics
Matches: 355, Mismatches: 157, Indels: 28
0.66 0.29 0.05
Matches are distributed among these distances:
49 7 0.02
50 311 0.88
51 4 0.01
53 28 0.08
54 5 0.01
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.28
Consensus pattern (50 bp):
AGATCCGCCGTTGTGGCTTCAATCTGCTCAACTGCACTGCCAGGGAAATA
Found at i:49039807 original size:50 final size:50
Alignment explanation
Indices: 49039145--49039807 Score: 271
Period size: 50 Copynumber: 13.2 Consensus size: 50
49039135 TCTACTCCAC
* * ** * * *
49039145 TGCACCGCCATGGAAGTAAGATAAGTCGTTATGGCTTCAATCTTTCTAAT
1 TGCACTGCCAGGGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAAT
* * *** * ** *
49039195 TGCGCTGTC-GGAGAAACCAGATCCGCCGTTGTGACTTCAATC-TGCTACAC
1 TGCACTGCCAGG-GAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTA-AT
* * * * *
49039245 TGTACCGCCAGGGAAGTAAGGTTCGCCATTGTGGCTTCAATCTTTTTAAT
1 TGCACTGCCAGGGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAAT
** * * *** * ** ** *
49039295 TGCGTTGTC-GAAGAAACCAGATCCGCCGTTGTGACTTCAATCTGCTCCAC
1 TGCACTGCCAG-GGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAAT
* * * * **
49039345 TACACCGCCAGGGAAATAAGATCTGCTATTGTGGCTTCAAAAAAT-TTTTTAAT
1 TGCACTGCCAGGGAAGTAAGATCCGCCGTTGTGGCTTC----AATCTTTTTAAT
* * * ** * ** ** *
49039398 TGCGCTGTCGGGGAAACCAA-ATCCGCCGTTGTGACTTCAATCTGCTCCAC
1 TGCACTGCCAGGG-AAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAAT
* * * * *
49039448 TGCACCGCCAGGGAAGTAAGATCTGCTGTTGTGGCTTCAAACTTTTAAAT
1 TGCACTGCCAGGGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAAT
* * *** * ** ** *
49039498 TGCGCTGTCAGGGAAACCAGATCCGCCGTTGTGACTTCAATCTGCTCCAC
1 TGCACTGCCAGGGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAAT
* *
49039548 TACACAGCCAGGGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAAT
1 TGCACTGCCAGGGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAAT
* * * *** * * * *
49039598 TGCGCTGTC-GAAGAAACCAGATCCGCCGTTGTGCCTTCAATCTGCTCT-AC
1 TGCACTGCCAG-GGAAGTAAGATCCGCCGTTGTGGCTTCAATCT-TTTTAAT
* * *
49039648 TACACCGCCAGGGAAGTAAGATCCGCCATTGTGGCTTCAATCTTTTTAAT
1 TGCACTGCCAGGGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAAT
* * * *** * * * * ** ** *
49039698 TGC-GTAGTCGGGGAAACCAGATCCGCTGTTGTGACTTTAATATGCTCCAC
1 TGCACT-GCCAGGGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAAT
* *
49039748 TGCACTGCCAGGGAAGTAAGATCCGCCATTGTGGCTTCAATATTTTTAAT
1 TGCACTGCCAGGGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAAT
*
49039798 TGCAATGCCA
1 TGCACTGCCA
49039808 AAGAGATAGG
Statistics
Matches: 413, Mismatches: 181, Indels: 38
0.65 0.29 0.06
Matches are distributed among these distances:
49 16 0.04
50 355 0.86
51 10 0.02
53 25 0.06
54 7 0.02
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.29
Consensus pattern (50 bp):
TGCACTGCCAGGGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAAT
Found at i:49041226 original size:14 final size:15
Alignment explanation
Indices: 49041184--49041228 Score: 58
Period size: 14 Copynumber: 3.1 Consensus size: 15
49041174 CTAGCCTCTC
*
49041184 CATTTTTTACTTTTT
1 CATTTTTCACTTTTT
49041199 CCATTTTTCA-TTTTT
1 -CATTTTTCACTTTTT
49041214 CA-TTTTCACTTTTT
1 CATTTTTCACTTTTT
49041228 C
1 C
49041229 GTCATTTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
13 6 0.22
14 8 0.30
15 5 0.19
16 8 0.30
ACGTcount: A:0.13, C:0.20, G:0.00, T:0.67
Consensus pattern (15 bp):
CATTTTTCACTTTTT
Found at i:49041770 original size:13 final size:12
Alignment explanation
Indices: 49041753--49041829 Score: 66
Period size: 13 Copynumber: 6.2 Consensus size: 12
49041743 CCAGCAGAGA
49041753 TTTTTTTTCTTT
1 TTTTTTTTCTTT
49041765 ATTTTTTTTCTTCT
1 -TTTTTTTTCTT-T
* *
49041779 TTTTTTCTCTCT
1 TTTTTTTTCTTT
**
49041791 TTTTTTTTGGTT
1 TTTTTTTTCTTT
*
49041803 TTTTTTTTGTTT
1 TTTTTTTTCTTT
49041815 GTTTATTTTT-TTT
1 -TTT-TTTTTCTTT
49041828 TT
1 TT
49041830 GGATTGAATC
Statistics
Matches: 54, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
12 22 0.41
13 26 0.48
14 6 0.11
ACGTcount: A:0.03, C:0.08, G:0.05, T:0.84
Consensus pattern (12 bp):
TTTTTTTTCTTT
Found at i:49041771 original size:12 final size:12
Alignment explanation
Indices: 49041754--49041796 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
49041744 CAGCAGAGAT
*
49041754 TTTTTTTCTTTA
1 TTTTTTTCTTTC
49041766 TTTTTTT-TCTTC
1 TTTTTTTCT-TTC
*
49041778 TTTTTTTCTCTC
1 TTTTTTTCTTTC
49041790 TTTTTTT
1 TTTTTTT
49041797 TTGGTTTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 1 0.04
12 25 0.93
13 1 0.04
ACGTcount: A:0.02, C:0.14, G:0.00, T:0.84
Consensus pattern (12 bp):
TTTTTTTCTTTC
Found at i:49041781 original size:11 final size:12
Alignment explanation
Indices: 49041767--49041796 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
49041757 TTTTCTTTAT
49041767 TTTTTTTCT-TC
1 TTTTTTTCTCTC
49041778 TTTTTTTCTCTC
1 TTTTTTTCTCTC
49041790 TTTTTTT
1 TTTTTTT
49041797 TTGGTTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 9 0.50
12 9 0.50
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (12 bp):
TTTTTTTCTCTC
Found at i:49044776 original size:22 final size:22
Alignment explanation
Indices: 49044750--49044801 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
49044740 TCAAACTCAC
*
49044750 TTTTTCTTCCTCTA-TT-TGCTT
1 TTTTTCTT-CTCTAGTTCTGCAT
49044771 TATTTTCTTCTCTAGTTCTGCAT
1 T-TTTTCTTCTCTAGTTCTGCAT
49044794 TTTTTCTT
1 TTTTTCTT
49044802 TCAAAGTCTT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
21 6 0.22
22 16 0.59
23 5 0.19
ACGTcount: A:0.08, C:0.21, G:0.06, T:0.65
Consensus pattern (22 bp):
TTTTTCTTCTCTAGTTCTGCAT
Found at i:49045298 original size:22 final size:22
Alignment explanation
Indices: 49045272--49045318 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
49045262 CCGAGATGTC
49045272 ATCCCTCCTTGGTGTAGCCACT
1 ATCCCTCCTTGGTGTAGCCACT
49045294 ATCCCTCCTTGGTGTAGCCACT
1 ATCCCTCCTTGGTGTAGCCACT
49045316 ATC
1 ATC
49045319 TCCTTCAATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.15, C:0.36, G:0.17, T:0.32
Consensus pattern (22 bp):
ATCCCTCCTTGGTGTAGCCACT
Found at i:49045323 original size:20 final size:21
Alignment explanation
Indices: 49045275--49045323 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 21
49045265 AGATGTCATC
49045275 CCTCCTTGGTGTAGCCACTAT
1 CCTCCTTGGTGTAGCCACTAT
49045296 CCCTCCTTGGTGTAGCCACTAT
1 -CCTCCTTGGTGTAGCCACTAT
49045318 -CTCCTT
1 CCTCCTT
49045324 CAATGGTGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 6 0.22
22 21 0.78
ACGTcount: A:0.12, C:0.37, G:0.16, T:0.35
Consensus pattern (21 bp):
CCTCCTTGGTGTAGCCACTAT
Found at i:49047694 original size:22 final size:23
Alignment explanation
Indices: 49047669--49047725 Score: 80
Period size: 22 Copynumber: 2.5 Consensus size: 23
49047659 GTAAGTTATG
*
49047669 AAAATATGTATACATATAT-ACT
1 AAAATATGTATACATATATAAAT
*
49047691 AAAATATGTATATATATATAAAT
1 AAAATATGTATACATATATAAAT
*
49047714 ATAATATGTATA
1 AAAATATGTATA
49047726 TATAAAAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
22 18 0.58
23 13 0.42
ACGTcount: A:0.53, C:0.04, G:0.05, T:0.39
Consensus pattern (23 bp):
AAAATATGTATACATATATAAAT
Found at i:49048050 original size:3 final size:3
Alignment explanation
Indices: 49048042--49048096 Score: 51
Period size: 3 Copynumber: 19.0 Consensus size: 3
49048032 ATACATAGTT
* * * * *
49048042 ATA ATA ATA ACA ATT ATA ATA AT- ATA A-A ATA CTA ATA CTA ATA CTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
49048088 ATA ATA ATA
1 ATA ATA ATA
49048097 GTATAAAAAT
Statistics
Matches: 40, Mismatches: 10, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
2 4 0.10
3 36 0.90
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:49052504 original size:19 final size:17
Alignment explanation
Indices: 49052475--49052521 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 17
49052465 TATATATACG
49052475 AAAAATGAAAGAACAGAA
1 AAAAATGAAAGAA-AGAA
49052493 AAAAATGCAAAGAAAGAA
1 AAAAATG-AAAGAAAGAA
49052511 AAAAATAGAAA
1 AAAAAT-GAAA
49052522 AAGAACCACC
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
18 20 0.74
19 7 0.26
ACGTcount: A:0.74, C:0.04, G:0.15, T:0.06
Consensus pattern (17 bp):
AAAAATGAAAGAAAGAA
Found at i:49053126 original size:15 final size:16
Alignment explanation
Indices: 49053106--49053136 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
49053096 TAAATAAACA
49053106 AAAATAAA-CCAAAAT
1 AAAATAAACCCAAAAT
49053121 AAAATAAACCCAAAAT
1 AAAATAAACCCAAAAT
49053137 CTTAAAATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.71, C:0.16, G:0.00, T:0.13
Consensus pattern (16 bp):
AAAATAAACCCAAAAT
Found at i:49054950 original size:21 final size:22
Alignment explanation
Indices: 49054926--49054970 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
49054916 ATAAAATATG
*
49054926 TTATAATTTGAAATTTT-CTTT
1 TTATAATTTAAAATTTTACTTT
**
49054947 TTATGTTTTAAAATTTTACTTT
1 TTATAATTTAAAATTTTACTTT
49054969 TT
1 TT
49054971 TTTGATTATT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.27, C:0.04, G:0.04, T:0.64
Consensus pattern (22 bp):
TTATAATTTAAAATTTTACTTT
Found at i:49058916 original size:30 final size:31
Alignment explanation
Indices: 49058853--49058919 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 31
49058843 GATTAAAAGT
* *
49058853 AAAGTTTCATGTATACATTTGAACCACAATC
1 AAAGTTTCAAGTATACAATTGAACCACAATC
* * *
49058884 AAAGTTTCAAGTATATAATTGTACTA-AATC
1 AAAGTTTCAAGTATACAATTGAACCACAATC
49058914 AAAGTT
1 AAAGTT
49058920 CATATATCAT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
30 10 0.32
31 21 0.68
ACGTcount: A:0.42, C:0.13, G:0.10, T:0.34
Consensus pattern (31 bp):
AAAGTTTCAAGTATACAATTGAACCACAATC
Found at i:49069053 original size:97 final size:94
Alignment explanation
Indices: 49068952--49069138 Score: 261
Period size: 97 Copynumber: 2.0 Consensus size: 94
49068942 AATTCATCTT
* *
49068952 TTTAATTAATAAC-TCTTTTATTTATATAAATAAAATAACAAAAATGTAATTATATAATAAAAAT
1 TTTAATTAATAACTTC-TTTATTTATATAAAT-AAAT---AAAAATATAAATATATAATAAAAAT
49069016 ATA-ATTTTTATATATATCATTATGTTAAAAAAA
61 ATATATTTTTATATATATCATTATGTTAAAAAAA
* * *
49069049 TTTAATTAATAACTTCTTTATTTATTTATATAAATAAATATATAAATATATAATAAAAATATATA
1 TTTAATTAATAACTTCTTTATTTATATAAATAAATAAAAATATAAATATATAATAAAAATATATA
*
49069114 TTTTTATATTTATCATTATGTTAAA
66 TTTTTATATATATCATTATGTTAAA
49069139 TATATTTTAT
Statistics
Matches: 82, Mismatches: 6, Indels: 7
0.86 0.06 0.07
Matches are distributed among these distances:
93 25 0.30
94 25 0.30
96 4 0.05
97 26 0.32
98 2 0.02
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.46
Consensus pattern (94 bp):
TTTAATTAATAACTTCTTTATTTATATAAATAAATAAAAATATAAATATATAATAAAAATATATA
TTTTTATATATATCATTATGTTAAAAAAA
Found at i:49075572 original size:29 final size:28
Alignment explanation
Indices: 49075540--49075596 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 28
49075530 AAATTTATGT
49075540 AAACCTACAAAAATTATAAAAATTCATAA
1 AAACCTACAAAAATTATAAAAATT-ATAA
* * * *
49075569 AAACTTATAAATATTATATAAATTATAA
1 AAACCTACAAAAATTATAAAAATTATAA
49075597 TAAATTATAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 4 0.17
29 20 0.83
ACGTcount: A:0.60, C:0.09, G:0.00, T:0.32
Consensus pattern (28 bp):
AAACCTACAAAAATTATAAAAATTATAA
Found at i:49075616 original size:12 final size:12
Alignment explanation
Indices: 49075599--49075651 Score: 52
Period size: 12 Copynumber: 4.0 Consensus size: 12
49075589 AATTATAATA
49075599 AATTATAAAAAT
1 AATTATAAAAAT
49075611 AATTATAAAAAAT
1 AATTAT-AAAAAT
*
49075624 AAAACATATTAAAAAT
1 --AA-TTA-TAAAAAT
49075640 AATTATAAAAAT
1 AATTATAAAAAT
49075652 TCATAATAAG
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
12 13 0.38
13 8 0.24
14 2 0.06
15 2 0.06
16 8 0.24
17 1 0.03
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (12 bp):
AATTATAAAAAT
Found at i:49075617 original size:29 final size:28
Alignment explanation
Indices: 49075559--49075648 Score: 85
Period size: 29 Copynumber: 3.1 Consensus size: 28
49075549 AAAATTATAA
* *
49075559 AAATTCATAAAAACTTATAAATATTA-TAT
1 AAATT-ATAAAAA-TTATAAAAATAATTAT
49075588 AAATTATAATAAATTATAAAAATAATTAT
1 AAATTATAA-AAATTATAAAAATAATTAT
**
49075617 AAAAAATAAAACA-TATTAAAAATAATTAT
1 AAATTATAAAA-ATTA-TAAAAATAATTAT
49075646 AAA
1 AAA
49075649 AATTCATAAT
Statistics
Matches: 53, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
28 18 0.34
29 35 0.66
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.33
Consensus pattern (28 bp):
AAATTATAAAAATTATAAAAATAATTAT
Found at i:49075618 original size:19 final size:19
Alignment explanation
Indices: 49075548--49075651 Score: 59
Period size: 19 Copynumber: 5.3 Consensus size: 19
49075538 GTAAACCTAC
*
49075548 AAAAATTATAA-AAATTCAT
1 AAAAATAATAATAAATT-AT
* *
49075567 AAAAACTTATAA-ATATTAT
1 AAAAA-TAATAATAAATTAT
* *
49075586 ATAAATTATAATAAATTAT
1 AAAAATAATAATAAATTAT
* **
49075605 AAAAATAATTATAAAAAAT
1 AAAAATAATAATAAATTAT
* *
49075624 AAAACATATTAAAAATAATTAT
1 AAAA-ATAAT-AATA-AATTAT
49075646 AAAAAT
1 AAAAAT
49075652 TCATAATAAG
Statistics
Matches: 67, Mismatches: 13, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
18 6 0.09
19 35 0.52
20 14 0.21
21 4 0.06
22 8 0.12
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (19 bp):
AAAAATAATAATAAATTAT
Found at i:49075678 original size:10 final size:9
Alignment explanation
Indices: 49075548--49075677 Score: 91
Period size: 10 Copynumber: 13.2 Consensus size: 9
49075538 GTAAACCTAC
49075548 AAAAATTAT
1 AAAAATTAT
49075557 AAAAATTCAT
1 AAAAATT-AT
49075567 AAAAACTTAT
1 AAAAA-TTAT
*
49075577 AAATATTAT
1 AAAAATTAT
*
49075586 ATAAATTAT
1 AAAAATTAT
49075595 AATAAATTAT
1 AA-AAATTAT
49075605 AAAAATAATTAT
1 --AAA-AATTAT
*
49075617 AAAAAATA-
1 AAAAATTAT
*
49075625 AAACATATTAA
1 AAA-A-ATTAT
49075636 AAATAATTAT
1 AAA-AATTAT
49075646 AAAAATTCAT
1 AAAAATT-AT
* *
49075656 AATAAGTTCT
1 AA-AAATTAT
49075666 AATAAATTAT
1 AA-AAATTAT
49075676 AA
1 AA
49075678 TCATTTATTG
Statistics
Matches: 98, Mismatches: 12, Indels: 21
0.75 0.09 0.16
Matches are distributed among these distances:
8 3 0.03
9 28 0.29
10 48 0.49
11 11 0.11
12 8 0.08
ACGTcount: A:0.62, C:0.04, G:0.01, T:0.34
Consensus pattern (9 bp):
AAAAATTAT
Found at i:49077161 original size:21 final size:21
Alignment explanation
Indices: 49077140--49077178 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
49077130 TTTTATGTTA
*
49077140 AATAAT-GTTATAATAATATT
1 AATAATGGTTAAAATAATATT
49077160 AATAATGGTTAAAATAATA
1 AATAATGGTTAAAATAATA
49077179 AAACATAAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (21 bp):
AATAATGGTTAAAATAATATT
Found at i:49078812 original size:3 final size:3
Alignment explanation
Indices: 49078804--49078855 Score: 88
Period size: 3 Copynumber: 17.7 Consensus size: 3
49078794 CTTTTACTTT
*
49078804 TTC TTC TTC TTC TGC TTC -TC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
49078851 TTC TT
1 TTC TT
49078856 TCTTGATTTC
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
2 2 0.04
3 44 0.96
ACGTcount: A:0.00, C:0.33, G:0.02, T:0.65
Consensus pattern (3 bp):
TTC
Found at i:49097412 original size:22 final size:22
Alignment explanation
Indices: 49097381--49097422 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
49097371 ATCCATTCTC
*
49097381 ATGGGTCCTTTTTTTTATTAGA
1 ATGGGCCCTTTTTTTTATTAGA
49097403 ATGGGCCCTTTTTTTTATTA
1 ATGGGCCCTTTTTTTTATTA
49097423 AGGGATTGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.17, C:0.12, G:0.17, T:0.55
Consensus pattern (22 bp):
ATGGGCCCTTTTTTTTATTAGA
Found at i:49100361 original size:3 final size:3
Alignment explanation
Indices: 49100348--49100378 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
49100338 ATGTCTTTGC
*
49100348 TCT TTT TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
49100379 ATTGGCTCTC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (3 bp):
TCT
Found at i:49117671 original size:20 final size:19
Alignment explanation
Indices: 49117639--49117689 Score: 61
Period size: 20 Copynumber: 2.7 Consensus size: 19
49117629 TATTTATAAA
49117639 TATTTTGAATTTT-AAAATT
1 TATTTTGAATTTTGAAAA-T
*
49117658 TATTTTTAATTTTTGAAAAT
1 TATTTTGAA-TTTTGAAAAT
49117678 TATTTTG-ATTTT
1 TATTTTGAATTTT
49117690 TTTTTGTAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
18 4 0.14
19 9 0.32
20 11 0.39
21 4 0.14
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (19 bp):
TATTTTGAATTTTGAAAAT
Found at i:49117691 original size:20 final size:19
Alignment explanation
Indices: 49117639--49117690 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
49117629 TATTTATAAA
*
49117639 TATTTTGAATTTTAAAATT
1 TATTTTGATTTTTAAAATT
*
49117658 TATTTTTAATTTTTGAAAA-T
1 TA-TTTTGATTTTT-AAAATT
49117678 TATTTTGATTTTT
1 TATTTTGATTTTT
49117691 TTTTGTAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
19 12 0.43
20 12 0.43
21 4 0.14
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (19 bp):
TATTTTGATTTTTAAAATT
Found at i:49120456 original size:24 final size:25
Alignment explanation
Indices: 49120420--49120468 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
49120410 ACAAATTAAA
* *
49120420 ATAATAATTTAATATATTTTAAAACC
1 ATAATAA-TTAATAAATTTAAAAACC
49120446 ATAATAA-TAATAAATTTAAAAAC
1 ATAATAATTAATAAATTTAAAAAC
49120469 ACCCTCAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 14 0.67
26 7 0.33
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.37
Consensus pattern (25 bp):
ATAATAATTAATAAATTTAAAAACC
Found at i:49121287 original size:16 final size:17
Alignment explanation
Indices: 49121259--49121292 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
49121249 AAAAGGAAAG
*
49121259 AAGAAAAATAGAATCGA
1 AAGAAAAATAGAACCGA
49121276 AAGAAAAA-AGAACCGA
1 AAGAAAAATAGAACCGA
49121292 A
1 A
49121293 TCGAAAAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.68, C:0.09, G:0.18, T:0.06
Consensus pattern (17 bp):
AAGAAAAATAGAACCGA
Found at i:49121295 original size:21 final size:23
Alignment explanation
Indices: 49121269--49121310 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
49121259 AAGAAAAATA
49121269 GAATCG-AAAGAA-AAAAGAACC
1 GAATCGAAAAGAAGAAAAGAACC
49121290 GAATCGAAAAGAAGAAAAGAA
1 GAATCGAAAAGAAGAAAAGAA
49121311 AAACCTTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 6 0.32
22 6 0.32
23 7 0.37
ACGTcount: A:0.64, C:0.10, G:0.21, T:0.05
Consensus pattern (23 bp):
GAATCGAAAAGAAGAAAAGAACC
Found at i:49122176 original size:100 final size:100
Alignment explanation
Indices: 49122095--49122638 Score: 617
Period size: 100 Copynumber: 5.4 Consensus size: 100
49122085 GATTTGCTGT
* * * * * * * * *
49122095 TGTAGCTTCAATTTGTTCCACTGGACCGCTTGGGGAGTAAGATTCGCTGTTGAAGCTTTAATCTT
1 TGTAGCTTTAATCTATTCCACTGCATCGCCTGGGAAGTAAGATTCGCTGCTGTAGCTTTAATCTT
*
49122160 TTTAACTGCAATGTCGGGGAAGCAAGATTCACCGT
66 TTTAACTGCAATGTCGGGGAAGCAAGATTCACCGA
* * * * * * **
49122195 TGTGGCTTTAATCTATTCCACAGTATCGCCTGGGAGGTAAAATTTGCTATTGTAGCTTTAATCTT
1 TGTAGCTTTAATCTATTCCACTGCATCGCCTGGGAAGTAAGATTCGCTGCTGTAGCTTTAATCTT
*
49122260 TTGAACTGCAATGTCGGGGAAGCAAGATTCACCGA
66 TTTAACTGCAATGTCGGGGAAGCAAGATTCACCGA
* * * *
49122295 TGTAGCTTTAATCTATTCCACTACATTGCCTGGGAAGTAGGATTCGCTGCTGTGGCTTTAATCTT
1 TGTAGCTTTAATCTATTCCACTGCATCGCCTGGGAAGTAAGATTCGCTGCTGTAGCTTTAATCTT
* *
49122360 TTTAACTGCAATGTCGAGGAAGCAAGATTCACCAA
66 TTTAACTGCAATGTCGGGGAAGCAAGATTCACCGA
* * * * *
49122395 TGTGGCTTTAATCTGTTCCACTGCATCGTCTGGGAAGTAGGATTCGCTGCTGTGGCTTTAATCTT
1 TGTAGCTTTAATCTATTCCACTGCATCGCCTGGGAAGTAAGATTCGCTGCTGTAGCTTTAATCTT
*
49122460 TTTAACTGCAATGTCGAGGAAGCAAGATTCACCGA
66 TTTAACTGCAATGTCGGGGAAGCAAGATTCACCGA
* * ** * * ** *
49122495 TGTGGCTTTAATCTGTTCCACT--ATACTGCCAAGGAAGTAGGATTCACCACTGTGGCTTTAATC
1 TGTAGCTTTAATCTATTCCACTGCAT-C-GCCTGGGAAGTAAGATTCGCTGCTGTAGCTTTAATC
*
49122558 TTTTTAACTACAATGTCGGGGAAGCAAGATTCACCGA
64 TTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGA
* * * * * *
49122595 TATGGCTTTAATTTGTTCCACTGTATCGCTTGGG-AGATAAGATT
1 TGTAGCTTTAATCTATTCCACTGCATCGCCTGGGAAG-TAAGATT
49122639 TGTATTTCTT
Statistics
Matches: 388, Mismatches: 51, Indels: 10
0.86 0.11 0.02
Matches are distributed among these distances:
98 2 0.01
99 3 0.01
100 380 0.98
101 1 0.00
102 2 0.01
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (100 bp):
TGTAGCTTTAATCTATTCCACTGCATCGCCTGGGAAGTAAGATTCGCTGCTGTAGCTTTAATCTT
TTTAACTGCAATGTCGGGGAAGCAAGATTCACCGA
Found at i:49122401 original size:200 final size:200
Alignment explanation
Indices: 49122125--49122644 Score: 718
Period size: 200 Copynumber: 2.6 Consensus size: 200
49122115 CTGGACCGCT
* * * **
49122125 TGGGGAGTAAGATTCGCTGTTGAAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTC
1 TGGGAAGTAGGATTCGCTGCTGTGGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTC
* * * *
49122190 ACCGTTGTGGCTTTAATCTATTCCACAGTATCGCCTGGGAGGTAAAATTTGCTATTGTAGCTTTA
66 ACCGATGTGGCTTTAATCTGTTCCACTGTATCGCCTGGGAGGTAAGATTTGCTATTGTAGCTTTA
*
49122255 ATCTTTTGAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTAGCTTTAATCTATTCCACTACA
131 ATCTTTTGAACTGCAATGTCGAGGAAGCAAGATTCACCGATGTAGCTTTAATCTATTCCACTACA
*
49122320 TTGCC
196 CTGCC
*
49122325 TGGGAAGTAGGATTCGCTGCTGTGGCTTTAATCTTTTTAACTGCAATGTCGAGGAAGCAAGATTC
1 TGGGAAGTAGGATTCGCTGCTGTGGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTC
* * * * * * ** *
49122390 ACCAATGTGGCTTTAATCTGTTCCACTGCATCGTCTGGGAAGTAGGATTCGCTGCTGTGGCTTTA
66 ACCGATGTGGCTTTAATCTGTTCCACTGTATCGCCTGGGAGGTAAGATTTGCTATTGTAGCTTTA
* * * *
49122455 ATCTTTTTAACTGCAATGTCGAGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTATA
131 ATCTTTTGAACTGCAATGTCGAGGAAGCAAGATTCACCGATGTAGCTTTAATCTATTCCACTACA
49122520 CTGCC
196 CTGCC
** * ** *
49122525 AAGGAAGTAGGATTCACCACTGTGGCTTTAATCTTTTTAACTACAATGTCGGGGAAGCAAGATTC
1 TGGGAAGTAGGATTCGCTGCTGTGGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTC
* * * *
49122590 ACCGATATGGCTTTAATTTGTTCCACTGTATCGCTTGGGAGATAAGATTTG-TATT
66 ACCGATGTGGCTTTAATCTGTTCCACTGTATCGCCTGGGAGGTAAGATTTGCTATT
49122645 TCTTCGGTCT
Statistics
Matches: 276, Mismatches: 44, Indels: 1
0.86 0.14 0.00
Matches are distributed among these distances:
199 2 0.01
200 274 0.99
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.33
Consensus pattern (200 bp):
TGGGAAGTAGGATTCGCTGCTGTGGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTC
ACCGATGTGGCTTTAATCTGTTCCACTGTATCGCCTGGGAGGTAAGATTTGCTATTGTAGCTTTA
ATCTTTTGAACTGCAATGTCGAGGAAGCAAGATTCACCGATGTAGCTTTAATCTATTCCACTACA
CTGCC
Found at i:49122590 original size:50 final size:49
Alignment explanation
Indices: 49122149--49122606 Score: 330
Period size: 50 Copynumber: 9.2 Consensus size: 49
49122139 CGCTGTTGAA
* *
49122149 GCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGTTGTG
1 GCTTTAATCTTTTCAACTGCAATGTCGGGGAAGCAAGATTCACC-ATGTG
* * * * * * * * * ** * *
49122199 GCTTTAATCTATTCCACAG-TATCGCCTGGGAGGTAAAATTTGCTATTGTA
1 GCTTTAATCTTTTCAACTGCAAT-GTCGGGGAAGCAAGATTCACCA-TGTG
* *
49122249 GCTTTAATCTTTTGAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTA
1 GCTTTAATCTTTTCAACTGCAATGTCGGGGAAGCAAGATTCACC-ATGTG
* * * * * * * * *
49122299 GCTTTAATCTATTCCACTACATTGCCTGGGAAGTAGGATTCGCTGC-TGTG
1 GCTTTAATCTTTTCAACTGCAATGTCGGGGAAGCAAGATTCAC--CATGTG
* *
49122349 GCTTTAATCTTTTTAACTGCAATGTCGAGGAAGCAAGATTCACCAATGTG
1 GCTTTAATCTTTTCAACTGCAATGTCGGGGAAGCAAGATTCACC-ATGTG
* * * * * *
49122399 GCTTTAATCTGTTCCACTGC-ATCGTCTGGGAAGTAGGATTCGCTGC-TGTG
1 GCTTTAATCTTTTCAACTGCAAT-GTCGGGGAAGCAAGATTCAC--CATGTG
* *
49122449 GCTTTAATCTTTTTAACTGCAATGTCGAGGAAGCAAGATTCACCGATGTG
1 GCTTTAATCTTTTCAACTGCAATGTCGGGGAAGCAAGATTCACC-ATGTG
* * ** * * ** * *
49122499 GCTTTAATCTGTTCCACTATACTGCCAAGGAAGTAGGATTCACCACTGTG
1 GCTTTAATCTTTTCAACTGCAATGTCGGGGAAGCAAGATTCACCA-TGTG
* * *
49122549 GCTTTAATCTTTTTAACTACAATGTCGGGGAAGCAAGATTCACCGATATG
1 GCTTTAATCTTTTCAACTGCAATGTCGGGGAAGCAAGATTCACC-ATGTG
49122599 GCTTTAAT
1 GCTTTAAT
49122607 TTGTTCCACT
Statistics
Matches: 305, Mismatches: 87, Indels: 32
0.72 0.21 0.08
Matches are distributed among these distances:
48 2 0.01
49 5 0.02
50 290 0.95
51 6 0.02
52 2 0.01
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.33
Consensus pattern (49 bp):
GCTTTAATCTTTTCAACTGCAATGTCGGGGAAGCAAGATTCACCATGTG
Found at i:49122794 original size:44 final size:44
Alignment explanation
Indices: 49122741--49123554 Score: 291
Period size: 44 Copynumber: 17.6 Consensus size: 44
49122731 TTTTAATCCA
* * *
49122741 CTCCACTGTAATCTTAGGGAGATAGGATTACTGGTTTCAATCTG
1 CTCCACTGTAATCTCAGGGAGATAAGATTACTGGCTTCAATCTG
* * *
49122785 CTCCGCTGTAATCTCAAGGAGATAAGATTTCTGGCTTCAATCTGACG
1 CTCCACTGTAATCTCAGGGAGATAAGATTACTGGCTTCAATCT---G
* * *** * *
49122832 CGATCTACTTTACTGTAA-CTTCAGAGAGATAAGA-TCCTTTATTTTAATCCG
1 C--TC--C---ACTGTAATC-TCAGGGAGATAAGATTAC-TGGCTTCAATCTG
* *
49122883 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTG
1 CTCCACTGTAATCTCAGGGAGATAAGATTACTGGCTTCAATCTG
* *
49122927 CTCCGCTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGATGCG
1 CTCCACTGTAATCTCAGGGAGATAAGATTACTGGCTTCAATC---T--G
* * *** * *
49122976 ATCTACTCTACTGTAA-CTTCAGAGAGATAAGA-TCCTTTATTTTAATCCG
1 --CT-C-C-ACTGTAATC-TCAGGGAGATAAGATTAC-TGGCTTCAATCTG
** *
49123025 CTCCACTGTAATCTCAGGGAGATTGGATTACTAGCTTCAATCTG
1 CTCCACTGTAATCTCAGGGAGATAAGATTACTGGCTTCAATCTG
* **
49123069 CTCCGCTGTAATCTCAGGGAGATAAGATTTTTGGCTTCAATCTGATGCG
1 CTCCACTGTAATCTCAGGGAGATAAGATTACTGGCTTCAATC---T--G
* * *** *
49123118 ATCTACTCTACTGTAA-CTTCAGAGAGATAAGA-TCCTTTATTTTAATCTG
1 --CT-C-C-ACTGTAATC-TCAGGGAGATAAGATTAC-TGGCTTCAATCTG
* * *
49123167 CTCCACTGTAA-CTTCAGGGAGATAGGA-TAGTGTCTTCAATCTG
1 CTCCACTGTAATC-TCAGGGAGATAAGATTACTGGCTTCAATCTG
* * *
49123210 CTCCGCTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATTTGATGCG
1 CTCCACTGTAATCTCAGGGAGATAAGATTACTGGCTTCAA--T-CT--G
* * *** *
49123259 ATCTACTCTACTGTAA-CTTCAGTGAGATAAGA-TCCTTTATTTTAATCTG
1 --CT-C-C-ACTGTAATC-TCAGGGAGATAAGATTAC-TGGCTTCAATCTG
* * * *
49123308 CTCCACTGTAA-CTTCAGGGAGATAGGA-TAGTGTCTTCAATCTA
1 CTCCACTGTAATC-TCAGGGAGATAAGATTACTGGCTTCAATCTG
* * ** *
49123351 CTCCGCTGTAATCTCAGGGAGATAAGATCT-CTGAAAATCTTCGGTCTA
1 CTCCACTGTAATCTCAGGGAGATAAGAT-TACTG----GCTTCAATCTG
* * * * * *
49123399 CTCCACTGTAACCTCAGGGAGATAAGA--CCT-GATGCGATCTA
1 CTCCACTGTAATCTCAGGGAGATAAGATTACTGGCTTCAATCTG
* * * *** *
49123440 CTCTACTGTAA-CTTCAGAGAGATAAGA-TCCTTTATTTTAATCTG
1 CTCCACTGTAATC-TCAGGGAGATAAGATTAC-TGGCTTCAATCTG
* * *
49123484 CTCCACTGTAA-CTTCAGGGAGATAGGA-TAGTGTCTTCAATCTG
1 CTCCACTGTAATC-TCAGGGAGATAAGATTACTGGCTTCAATCTG
**
49123527 CTCTGCTGTAATCTCAGGGAGATAAGAT
1 CTCCACTGTAATCTCAGGGAGATAAGAT
49123555 CTAAAAATCT
Statistics
Matches: 582, Mismatches: 120, Indels: 136
0.69 0.14 0.16
Matches are distributed among these distances:
40 1 0.00
41 30 0.05
42 2 0.00
43 95 0.16
44 252 0.43
45 10 0.02
46 6 0.01
47 12 0.02
48 34 0.06
49 10 0.02
51 11 0.02
52 4 0.01
53 14 0.02
54 101 0.17
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.33
Consensus pattern (44 bp):
CTCCACTGTAATCTCAGGGAGATAAGATTACTGGCTTCAATCTG
Found at i:49122948 original size:142 final size:141
Alignment explanation
Indices: 49122684--49123383 Score: 1156
Period size: 142 Copynumber: 4.9 Consensus size: 141
49122674 GAGATAAGAC
* *
49122684 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCATTTATTTTAATCCACTCCACTG
1 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
* * *
49122749 TAATCTTAGGGAGATAGGATTACTGGTTTCAATCTGCTCCGCTGTAATCTCAAGGAGATAAGATT
66 TAATCTCAGGGAGATAGGATTACT-GCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
49122814 TCTGGCTTCAAT
130 TCTGGCTTCAAT
* *
49122826 CTGACGCGATCTACTTTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
1 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
49122891 TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
66 TAATCTCAGGGAGATAGGATTACT-GCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
49122956 TCTGGCTTCAAT
130 TCTGGCTTCAAT
49122968 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
1 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
*
49123033 TAATCTCAGGGAGATTGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
66 TAATCTCAGGGAGATAGGATTACT-GCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
*
49123098 TTTGGCTTCAAT
130 TCTGGCTTCAAT
*
49123110 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTGCTCCACTG
1 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
*
49123175 TAA-CTTCAGGGAGATAGGA-TAGTGTCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGAT
66 TAATC-TCAGGGAGATAGGATTACTG-CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGAT
49123238 TTCTGGCTTCAAT
129 TTCTGGCTTCAAT
* * *
49123251 TTGATGCGATCTACTCTACTGTAACTTCAGTGAGATAAGATCCTTTATTTTAATCTGCTCCACTG
1 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
* *
49123316 TAA-CTTCAGGGAGATAGGA-TAGTGTCTTCAATCTACTCCGCTGTAATCTCAGGGAGATAAGAT
66 TAATC-TCAGGGAGATAGGATTACTG-CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGAT
*
49123379 CTCTG
129 TTCTG
49123384 AAAATCTTCG
Statistics
Matches: 536, Mismatches: 20, Indels: 5
0.96 0.04 0.01
Matches are distributed among these distances:
140 1 0.00
141 183 0.34
142 352 0.66
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (141 bp):
CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
TAATCTCAGGGAGATAGGATTACTGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTT
CTGGCTTCAAT
Found at i:49124796 original size:7 final size:7
Alignment explanation
Indices: 49124778--49124830 Score: 83
Period size: 7 Copynumber: 7.9 Consensus size: 7
49124768 TATCCTCTCT
49124778 ATTTTTC
1 ATTTTTC
49124785 A-TTTTC
1 ATTTTTC
49124791 ATTTTTC
1 ATTTTTC
49124798 ATTTTTC
1 ATTTTTC
*
49124805 A-TTCTC
1 ATTTTTC
49124811 ATTTTTC
1 ATTTTTC
49124818 ATTTTTC
1 ATTTTTC
49124825 ATTTTT
1 ATTTTT
49124831 TTTGACTCAG
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
6 11 0.26
7 31 0.74
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.70
Consensus pattern (7 bp):
ATTTTTC
Found at i:49124796 original size:13 final size:14
Alignment explanation
Indices: 49124778--49124830 Score: 83
Period size: 13 Copynumber: 3.9 Consensus size: 14
49124768 TATCCTCTCT
49124778 ATTTTTCA-TTTTC
1 ATTTTTCATTTTTC
49124791 ATTTTTCATTTTTC
1 ATTTTTCATTTTTC
*
49124805 A-TTCTCATTTTTC
1 ATTTTTCATTTTTC
49124818 ATTTTTCATTTTT
1 ATTTTTCATTTTT
49124831 TTTGACTCAG
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
13 20 0.56
14 16 0.44
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.70
Consensus pattern (14 bp):
ATTTTTCATTTTTC
Found at i:49124801 original size:20 final size:20
Alignment explanation
Indices: 49124778--49124829 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
49124768 TATCCTCTCT
49124778 ATTTTTCATTTTCATTTTTC
1 ATTTTTCATTTTCATTTTTC
*
49124798 ATTTTTCATTCTCATTTTTC
1 ATTTTTCATTTTCATTTTTC
49124818 ATTTTTCATTTT
1 ATTTTTCATTTT
49124830 TTTTGACTCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.69
Consensus pattern (20 bp):
ATTTTTCATTTTCATTTTTC
Found at i:49130252 original size:24 final size:25
Alignment explanation
Indices: 49130216--49130264 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
49130206 ACAAATTAAA
* *
49130216 ATAATAATTTAATATATTTTAAAACC
1 ATAATAA-TTAATAAATTTAAAAACC
49130242 ATAATAA-TAATAAATTTAAAAAC
1 ATAATAATTAATAAATTTAAAAAC
49130265 ACCCTCAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 14 0.67
26 7 0.33
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.37
Consensus pattern (25 bp):
ATAATAATTAATAAATTTAAAAACC
Found at i:49136460 original size:15 final size:16
Alignment explanation
Indices: 49136442--49136491 Score: 57
Period size: 18 Copynumber: 3.1 Consensus size: 16
49136432 TTTTTTAATT
49136442 TAAAAATT-TTAAAAA
1 TAAAAATTATTAAAAA
49136457 TAAAAATTATTAAAAA
1 TAAAAATTATTAAAAA
* *
49136473 GTATAAAAATATAAAAAA
1 -TA-AAAATTATTAAAAA
49136491 T
1 T
49136492 GATATTTTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
15 8 0.27
16 7 0.23
17 3 0.10
18 12 0.40
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (16 bp):
TAAAAATTATTAAAAA
Found at i:49136881 original size:15 final size:15
Alignment explanation
Indices: 49136861--49136889 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
49136851 TTTATTTAAG
49136861 TAGATAAATCTTAGT
1 TAGATAAATCTTAGT
49136876 TAGATAAATCTTAG
1 TAGATAAATCTTAG
49136890 AATAAATCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.07, G:0.14, T:0.38
Consensus pattern (15 bp):
TAGATAAATCTTAGT
Found at i:49148177 original size:50 final size:50
Alignment explanation
Indices: 49148098--49148243 Score: 177
Period size: 50 Copynumber: 2.9 Consensus size: 50
49148088 TTTCCTGTAC
* * * * **
49148098 TGCCAATGCCATATCCCAGATATGATCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCAATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* * *
49148148 TGCCCATGCAATGTCCCAGACATGGTCTTACGA-GGGACCTCTCATCTTGG
1 TGCCAATGCAATGTCCCAGACATGGTCTTAC-ATGGGACCTCTCATATCGG
* *
49148198 TGCCAATGCCATGTCCCAGACATGGTTTTACATGGGACCTCTCATA
1 TGCCAATGCAATGTCCCAGACATGGTCTTACATGGGACCTCTCATA
49148244 ACCTCAATAA
Statistics
Matches: 81, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
49 1 0.01
50 79 0.98
51 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.28
Consensus pattern (50 bp):
TGCCAATGCAATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
Found at i:49151076 original size:203 final size:203
Alignment explanation
Indices: 49150721--49151128 Score: 807
Period size: 203 Copynumber: 2.0 Consensus size: 203
49150711 TGATCCAAAT
49150721 GTAAAATTCGAAAATAAAGAAGGTCGATTAGTTGATAAAGGGTACTACCAAAGATTAGTTGATAA
1 GTAAAATTCGAAAATAAAGAAGGTCGATTAGTTGATAAAGGGTACTACCAAAGATTAGTTGATAA
49150786 CTTAATTTACTTATCACATACAAGGCCAGACATAGCTTTTGCAGTGAGCTTAGTGAGTCAATTTA
66 CTTAATTTACTTATCACATACAAGGCCAGACATAGCTTTTGCAGTGAGCTTAGTGAGTCAATTTA
49150851 TGCCCCCCCCAAATAATGGAACATGAAGTAGTGTTTCGGATTCTGAGATACTTAAAGAGTTCACC
131 TGCCCCCCCCAAATAATGGAACATGAAGTAGTGTTTCGGATTCTGAGATACTTAAAGAGTTCACC
49150916 TGGAAAAG
196 TGGAAAAG
49150924 GTAAAATTCGAAAATAAAGAAGGTCGATTAGTTGATAAAGGGTACTACCAAAGATTAGTTGATAA
1 GTAAAATTCGAAAATAAAGAAGGTCGATTAGTTGATAAAGGGTACTACCAAAGATTAGTTGATAA
49150989 CTTAATTTACTTATCACATACAAGGCCAGACATAGCTTTTGCAGTGAGCTTAGTGAGTCAATTTA
66 CTTAATTTACTTATCACATACAAGGCCAGACATAGCTTTTGCAGTGAGCTTAGTGAGTCAATTTA
*
49151054 TGCCCCCCCCAAATAGTGGAACATGAAGTAGTGTTTCGGATTCTGAGATACTTAAAGAGTTCACC
131 TGCCCCCCCCAAATAATGGAACATGAAGTAGTGTTTCGGATTCTGAGATACTTAAAGAGTTCACC
49151119 TGGAAAAG
196 TGGAAAAG
49151127 GT
1 GT
49151129 TTATTCTTCA
Statistics
Matches: 204, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
203 204 1.00
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.28
Consensus pattern (203 bp):
GTAAAATTCGAAAATAAAGAAGGTCGATTAGTTGATAAAGGGTACTACCAAAGATTAGTTGATAA
CTTAATTTACTTATCACATACAAGGCCAGACATAGCTTTTGCAGTGAGCTTAGTGAGTCAATTTA
TGCCCCCCCCAAATAATGGAACATGAAGTAGTGTTTCGGATTCTGAGATACTTAAAGAGTTCACC
TGGAAAAG
Found at i:49159882 original size:85 final size:85
Alignment explanation
Indices: 49159739--49159907 Score: 329
Period size: 85 Copynumber: 2.0 Consensus size: 85
49159729 AAATAATAAT
*
49159739 AACATAAACGCAACACGAATATACAAATGTCTCCAAACCTATTTAATACAAATTAAATGTGTTAA
1 AACATAAACACAACACGAATATACAAATGTCTCCAAACCTATTTAATACAAATTAAATGTGTTAA
49159804 ATTTTATATAAATAAAAAAA
66 ATTTTATATAAATAAAAAAA
49159824 AACATAAACACAACACGAATATACAAATGTCTCCAAACCTATTTAATACAAATTAAATGTGTTAA
1 AACATAAACACAACACGAATATACAAATGTCTCCAAACCTATTTAATACAAATTAAATGTGTTAA
49159889 ATTTTATATAAATAAAAAA
66 ATTTTATATAAATAAAAAA
49159908 TACCTTAACC
Statistics
Matches: 83, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 83 1.00
ACGTcount: A:0.52, C:0.14, G:0.05, T:0.28
Consensus pattern (85 bp):
AACATAAACACAACACGAATATACAAATGTCTCCAAACCTATTTAATACAAATTAAATGTGTTAA
ATTTTATATAAATAAAAAAA
Found at i:49165388 original size:31 final size:32
Alignment explanation
Indices: 49165325--49165393 Score: 88
Period size: 32 Copynumber: 2.2 Consensus size: 32
49165315 TATCATAATT
*
49165325 TAAATTTATTCAAAAAGTACAAAAAATTAAAA
1 TAAATTAATTCAAAAAGTACAAAAAATTAAAA
* *
49165357 TTAATTAATTTAAAAA-TAC-AAAAATTAAAAA
1 TAAATTAATTCAAAAAGTACAAAAAATT-AAAA
49165388 TAAATT
1 TAAATT
49165394 TTAATTAATA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
30 7 0.22
31 12 0.38
32 13 0.41
ACGTcount: A:0.62, C:0.04, G:0.01, T:0.32
Consensus pattern (32 bp):
TAAATTAATTCAAAAAGTACAAAAAATTAAAA
Found at i:49165497 original size:22 final size:22
Alignment explanation
Indices: 49165472--49165523 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 22
49165462 AATAAATTAA
*
49165472 AAATTAAAAATGCTATAA-CTTG
1 AAATTAAAAAAGCT-TAATCTTG
49165494 AAATTTAAAAAAGCTTAATCTTG
1 AAA-TTAAAAAAGCTTAATCTTG
*
49165517 GAATTAA
1 AAATTAA
49165524 GCCAAAGCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
22 10 0.38
23 16 0.62
ACGTcount: A:0.50, C:0.08, G:0.10, T:0.33
Consensus pattern (22 bp):
AAATTAAAAAAGCTTAATCTTG
Found at i:49168082 original size:50 final size:50
Alignment explanation
Indices: 49168019--49168197 Score: 232
Period size: 50 Copynumber: 3.6 Consensus size: 50
49168009 TGTCATATCA
* ** * * * *
49168019 CAGATATGGTCTTACATGGGAGTTCTCATATAAGTGCCCATGCCATGTCC
1 CAGACATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGCCATGTCC
* ** *
49168069 CAAACATGGTCTTACGGGGGACCTCTTATCTCAGTGCCAACGCCATGTCC
1 CAGACATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGCCATGTCC
* *
49168119 CAGACATGGTCTTACATGGGACCTCTCATCTCGGTGTCAACGCCATGTCC
1 CAGACATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGCCATGTCC
*
49168169 CAGACATGGTCTTACATGAGACCTCTCAT
1 CAGACATGGTCTTACATGGGACCTCTCAT
49168198 AATCTCAATA
Statistics
Matches: 111, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
50 111 1.00
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (50 bp):
CAGACATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGCCATGTCC
Found at i:49168192 original size:100 final size:101
Alignment explanation
Indices: 49168019--49168252 Score: 240
Period size: 100 Copynumber: 2.3 Consensus size: 101
49168009 TGTCATATCA
* * * *
49168019 CAGATATGGTCTTACATGGGAGTTCTCATATAAGTGCCCATGCCATGTCCCAAACATGGTCTTAC
1 CAGACATGGTCTTACATGGGA--TCTCATCTAAGTGCCAACGCCATGTCCCAAACATGGTCTTAC
* * *
49168084 GGGGGACCTCT-T-ATCTC-AGTGCCAACGCCATGTCC
64 AGGAGACCTCTATAATCTCAAATGCCAACGCCATGTCC
** * *
49168119 CAGACATGGTCTTACATGGGACCTCTCATCTCGGTGTCAACGCCATGTCCCAGACATGGTCTTAC
1 CAGACATGGTCTTACATGGGA--TCTCATCTAAGTGCCAACGCCATGTCCCAAACATGGTCTTAC
* * *
49168184 ATGAGACCTCTCATAATCTCAATAATGCTAATGCCATGTCC
64 AGGAGACCTCT-ATAATCTC-A-AATGCCAACGCCATGTCC
* *
49168225 CATACATGGTCATACATGGGATCTCATC
1 CAGACATGGTCTTACATGGGATCTCATC
49168253 CTCTTAATGT
Statistics
Matches: 110, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
100 63 0.57
102 1 0.01
103 5 0.05
104 7 0.06
106 34 0.31
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (101 bp):
CAGACATGGTCTTACATGGGATCTCATCTAAGTGCCAACGCCATGTCCCAAACATGGTCTTACAG
GAGACCTCTATAATCTCAAATGCCAACGCCATGTCC
Found at i:49168222 original size:56 final size:50
Alignment explanation
Indices: 49168060--49168242 Score: 177
Period size: 50 Copynumber: 3.5 Consensus size: 50
49168050 AAGTGCCCAT
* ** * * * **
49168060 GCCATGTCCCAAACATGGTCTTACGGGGGACCTCTTATCTCAGTGCCAAC
1 GCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCAATATCAAC
* ** *
49168110 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGTCAAC
1 GCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCAATATCAAC
*
49168160 GCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATAATCTCAATAATGCTAAT
1 GCCATGTCCCAGACATGGTCTTACATGAGACCTCTC---ATCTCAAT-AT-C-AAC
* *
49168216 GCCATGTCCCATACATGGTCATACATG
1 GCCATGTCCCAGACATGGTCTTACATG
49168243 GGATCTCATC
Statistics
Matches: 114, Mismatches: 13, Indels: 6
0.86 0.10 0.05
Matches are distributed among these distances:
50 79 0.69
53 6 0.05
54 1 0.01
55 1 0.01
56 27 0.24
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCAATATCAAC
Found at i:49185939 original size:31 final size:32
Alignment explanation
Indices: 49185876--49185944 Score: 88
Period size: 32 Copynumber: 2.2 Consensus size: 32
49185866 TATCATAATT
*
49185876 TAAATTTATTCAAAAAGTACAAAAAATTAAAA
1 TAAATTAATTCAAAAAGTACAAAAAATTAAAA
* *
49185908 TTAATTAATTTAAAAA-TAC-AAAAATTAAAAA
1 TAAATTAATTCAAAAAGTACAAAAAATT-AAAA
49185939 TAAATT
1 TAAATT
49185945 TTAATTAATA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
30 7 0.22
31 12 0.38
32 13 0.41
ACGTcount: A:0.62, C:0.04, G:0.01, T:0.32
Consensus pattern (32 bp):
TAAATTAATTCAAAAAGTACAAAAAATTAAAA
Found at i:49186048 original size:22 final size:22
Alignment explanation
Indices: 49186023--49186074 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 22
49186013 AATAAATTAA
*
49186023 AAATTAAAAATGCTATAA-CTTG
1 AAATTAAAAAAGCT-TAATCTTG
49186045 AAATTTAAAAAAGCTTAATCTTG
1 AAA-TTAAAAAAGCTTAATCTTG
*
49186068 GAATTAA
1 AAATTAA
49186075 GCCAAAGCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
22 10 0.38
23 16 0.62
ACGTcount: A:0.50, C:0.08, G:0.10, T:0.33
Consensus pattern (22 bp):
AAATTAAAAAAGCTTAATCTTG
Found at i:49188634 original size:50 final size:50
Alignment explanation
Indices: 49188571--49188749 Score: 232
Period size: 50 Copynumber: 3.6 Consensus size: 50
49188561 TGTCATATCA
* ** * * * *
49188571 CAGATATGGTCTTACATGGGAGTTCTCATATAAGTGCCCATGCCATGTCC
1 CAGACATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGCCATGTCC
* ** *
49188621 CAAACATGGTCTTACGGGGGACCTCTTATCTCAGTGCCAACGCCATGTCC
1 CAGACATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGCCATGTCC
* *
49188671 CAGACATGGTCTTACATGGGACCTCTCATCTCGGTGTCAACGCCATGTCC
1 CAGACATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGCCATGTCC
*
49188721 CAGACATGGTCTTACATGAGACCTCTCAT
1 CAGACATGGTCTTACATGGGACCTCTCAT
49188750 AATCTCAATA
Statistics
Matches: 111, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
50 111 1.00
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (50 bp):
CAGACATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGCCATGTCC
Found at i:49188744 original size:100 final size:101
Alignment explanation
Indices: 49188571--49188804 Score: 240
Period size: 100 Copynumber: 2.3 Consensus size: 101
49188561 TGTCATATCA
* * * *
49188571 CAGATATGGTCTTACATGGGAGTTCTCATATAAGTGCCCATGCCATGTCCCAAACATGGTCTTAC
1 CAGACATGGTCTTACATGGGA--TCTCATCTAAGTGCCAACGCCATGTCCCAAACATGGTCTTAC
* * *
49188636 GGGGGACCTCT-T-ATCTC-AGTGCCAACGCCATGTCC
64 AGGAGACCTCTATAATCTCAAATGCCAACGCCATGTCC
** * *
49188671 CAGACATGGTCTTACATGGGACCTCTCATCTCGGTGTCAACGCCATGTCCCAGACATGGTCTTAC
1 CAGACATGGTCTTACATGGGA--TCTCATCTAAGTGCCAACGCCATGTCCCAAACATGGTCTTAC
* * *
49188736 ATGAGACCTCTCATAATCTCAATAATGCTAATGCCATGTCC
64 AGGAGACCTCT-ATAATCTC-A-AATGCCAACGCCATGTCC
* *
49188777 CATACATGGTCATACATGGGATCTCATC
1 CAGACATGGTCTTACATGGGATCTCATC
49188805 CTCTTAATGT
Statistics
Matches: 110, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
100 63 0.57
102 1 0.01
103 5 0.05
104 7 0.06
106 34 0.31
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (101 bp):
CAGACATGGTCTTACATGGGATCTCATCTAAGTGCCAACGCCATGTCCCAAACATGGTCTTACAG
GAGACCTCTATAATCTCAAATGCCAACGCCATGTCC
Found at i:49188774 original size:56 final size:50
Alignment explanation
Indices: 49188612--49188794 Score: 177
Period size: 50 Copynumber: 3.5 Consensus size: 50
49188602 AAGTGCCCAT
* ** * * * **
49188612 GCCATGTCCCAAACATGGTCTTACGGGGGACCTCTTATCTCAGTGCCAAC
1 GCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCAATATCAAC
* ** *
49188662 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGTCAAC
1 GCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCAATATCAAC
*
49188712 GCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATAATCTCAATAATGCTAAT
1 GCCATGTCCCAGACATGGTCTTACATGAGACCTCTC---ATCTCAAT-AT-C-AAC
* *
49188768 GCCATGTCCCATACATGGTCATACATG
1 GCCATGTCCCAGACATGGTCTTACATG
49188795 GGATCTCATC
Statistics
Matches: 114, Mismatches: 13, Indels: 6
0.86 0.10 0.05
Matches are distributed among these distances:
50 79 0.69
53 6 0.05
54 1 0.01
55 1 0.01
56 27 0.24
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCAATATCAAC
Found at i:49197264 original size:14 final size:16
Alignment explanation
Indices: 49197235--49197266 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
49197225 AAATCGGCAC
49197235 AAGTATAAGCAAAGAA
1 AAGTATAAGCAAAGAA
49197251 AAGTA-AAG-AAAGAA
1 AAGTATAAGCAAAGAA
49197265 AA
1 AA
49197267 CGAAAACAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.50
15 3 0.19
16 5 0.31
ACGTcount: A:0.69, C:0.03, G:0.19, T:0.09
Consensus pattern (16 bp):
AAGTATAAGCAAAGAA
Found at i:49199158 original size:23 final size:22
Alignment explanation
Indices: 49199107--49199158 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
49199097 CCTCGTCTTT
*
49199107 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
49199129 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
49199152 TTCTTTT
1 TTCTTTT
49199159 TCAATTTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:49202900 original size:54 final size:54
Alignment explanation
Indices: 49202831--49202974 Score: 177
Period size: 54 Copynumber: 2.7 Consensus size: 54
49202821 CCTAATATTT
* * * *
49202831 GTAAAATGA-CTGTAATACCCTTGTAGGGTAAAATAATCGTAATGCCCCTGTAGG
1 GTAAAATGATC-GTAATACCCCTGTAGGGTAAAATAACCGTAATACCCCTATAGG
* * *
49202885 GTAAACTGATCGTAATGCCCCTGTAGGGTAAAATGACCGTAATACCCCTATAGG
1 GTAAAATGATCGTAATACCCCTGTAGGGTAAAATAACCGTAATACCCCTATAGG
*
49202939 GTAAAATGATCGTAATACCCGTAG-AGGGT-AAATAAC
1 GTAAAATGATCGTAATACCCCT-GTAGGGTAAAATAAC
49202975 TATTTTGCCC
Statistics
Matches: 77, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
53 6 0.08
54 69 0.90
55 2 0.03
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (54 bp):
GTAAAATGATCGTAATACCCCTGTAGGGTAAAATAACCGTAATACCCCTATAGG
Found at i:49202970 original size:27 final size:27
Alignment explanation
Indices: 49202831--49202958 Score: 177
Period size: 27 Copynumber: 4.7 Consensus size: 27
49202821 CCTAATATTT
*
49202831 GTAAAATGA-CTGTAATACCCTTGTAGG
1 GTAAAATGATC-GTAATACCCCTGTAGG
* *
49202858 GTAAAATAATCGTAATGCCCCTGTAGG
1 GTAAAATGATCGTAATACCCCTGTAGG
* *
49202885 GTAAACTGATCGTAATGCCCCTGTAGG
1 GTAAAATGATCGTAATACCCCTGTAGG
* *
49202912 GTAAAATGACCGTAATACCCCTATAGG
1 GTAAAATGATCGTAATACCCCTGTAGG
49202939 GTAAAATGATCGTAATACCC
1 GTAAAATGATCGTAATACCC
49202959 GTAGAGGGTA
Statistics
Matches: 90, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
27 89 0.99
28 1 0.01
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.26
Consensus pattern (27 bp):
GTAAAATGATCGTAATACCCCTGTAGG
Found at i:49203020 original size:23 final size:23
Alignment explanation
Indices: 49202990--49203033 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
49202980 TGCCCCTCGA
49202990 GGTTAAATGATTGATTTGTCTAT
1 GGTTAAATGATTGATTTGTCTAT
*
49203013 GGTTAAATGGTTGATTTGTCT
1 GGTTAAATGATTGATTTGTCT
49203034 GTGTTTGGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.23, C:0.05, G:0.25, T:0.48
Consensus pattern (23 bp):
GGTTAAATGATTGATTTGTCTAT
Found at i:49203070 original size:24 final size:24
Alignment explanation
Indices: 49203024--49203076 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
49203014 GTTAAATGGT
*
49203024 TGATTTGTCTGTGTTTGGTATGAC
1 TGATTTGTCTGTGTTTGGAATGAC
49203048 TGATTTGTCTGTGATTT-GAATGAC
1 TGATTTGTCTGTG-TTTGGAATGAC
*
49203072 CGATT
1 TGATT
49203077 CTGAGCATGG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 23 0.88
25 3 0.12
ACGTcount: A:0.17, C:0.09, G:0.26, T:0.47
Consensus pattern (24 bp):
TGATTTGTCTGTGTTTGGAATGAC
Found at i:49203289 original size:32 final size:31
Alignment explanation
Indices: 49203248--49203420 Score: 179
Period size: 32 Copynumber: 5.5 Consensus size: 31
49203238 GCTGCGATGC
49203248 TACTGATGGCTTTGTGCCGATCATATTAGCGT
1 TACTGATGGCTTTGTGCCGATCATATTA-CGT
*
49203280 TACTGATGGCTTTGTACCGATCATATTACCGT
1 TACTGATGGCTTTGTGCCGATCATATTA-CGT
* *
49203312 TACTGATGACTTTGTGCCGATCATATTATCAT
1 TACTGATGGCTTTGTGCCGATCATATTA-CGT
* ** * * *
49203344 TACTGATGTCTGCGTGCCTATCATATCACTGC
1 TACTGATGGCTTTGTGCCGATCATATTAC-GT
* *
49203376 TATTGATGGCTTTGTGCCAATCATATTAC-T
1 TACTGATGGCTTTGTGCCGATCATATTACGT
*
49203406 GTACTTATGG-TTTGT
1 -TACTGATGGCTTTGT
49203421 AGCCATTCTG
Statistics
Matches: 117, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
30 5 0.04
31 8 0.07
32 104 0.89
ACGTcount: A:0.21, C:0.20, G:0.20, T:0.40
Consensus pattern (31 bp):
TACTGATGGCTTTGTGCCGATCATATTACGT
Found at i:49203328 original size:64 final size:64
Alignment explanation
Indices: 49203246--49203403 Score: 199
Period size: 64 Copynumber: 2.5 Consensus size: 64
49203236 TTGCTGCGAT
* ** *
49203246 GCTACTGATGGCTTTGTGCCGATCATATTAGCGTTACTGATGGCTTTGTACCGATCATATTACC
1 GCTACTGATGGCTTTGTGCCGATCATATTAGCATTACTGATGGCTGCGTACCGATCATATCACC
* * * * * * *
49203310 GTTACTGATGACTTTGTGCCGATCATATTATCATTACTGATGTCTGCGTGCCTATCATATCACT
1 GCTACTGATGGCTTTGTGCCGATCATATTAGCATTACTGATGGCTGCGTACCGATCATATCACC
* *
49203374 GCTATTGATGGCTTTGTGCCAATCATATTA
1 GCTACTGATGGCTTTGTGCCGATCATATTA
49203404 CTGTACTTAT
Statistics
Matches: 79, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
64 79 1.00
ACGTcount: A:0.22, C:0.21, G:0.20, T:0.38
Consensus pattern (64 bp):
GCTACTGATGGCTTTGTGCCGATCATATTAGCATTACTGATGGCTGCGTACCGATCATATCACC
Found at i:49203435 original size:22 final size:22
Alignment explanation
Indices: 49203410--49203461 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
49203400 ATTACTGTAC
* * *
49203410 TTATGGTTTGTAGCCATTCTGT
1 TTATGGCTTATAGCCATCCTGT
* *
49203432 TTATAGCTTATAGCTATCCTGT
1 TTATGGCTTATAGCCATCCTGT
49203454 TTATGGCT
1 TTATGGCT
49203462 CTTAGTCATT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.17, C:0.15, G:0.19, T:0.48
Consensus pattern (22 bp):
TTATGGCTTATAGCCATCCTGT
Found at i:49205907 original size:21 final size:21
Alignment explanation
Indices: 49205861--49205915 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
49205851 TACTGTCTCA
* *
49205861 AATGTTGTGACTTCTAATGTTG
1 AATGTTGCGAC-TCTAAGGTTG
49205883 AATGTTGCGACTCTAAGGTCT-
1 AATGTTGCGACTCTAAGGT-TG
*
49205904 AATGTTACGACT
1 AATGTTGCGACT
49205916 TCTTGCTTCT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
21 18 0.62
22 11 0.38
ACGTcount: A:0.25, C:0.15, G:0.22, T:0.38
Consensus pattern (21 bp):
AATGTTGCGACTCTAAGGTTG
Found at i:49213277 original size:19 final size:19
Alignment explanation
Indices: 49213255--49213326 Score: 85
Period size: 20 Copynumber: 3.7 Consensus size: 19
49213245 AAAATACAAA
49213255 AAAAATTCAAAATCATTTT
1 AAAAATTCAAAATCATTTT
*
49213274 AAAAAATTCAAAATAAATTTT
1 -AAAAATTCAAAAT-CATTTT
49213295 -AAAATTCAAAA-CATTTAT
1 AAAAATTCAAAATCATTT-T
49213313 AAAAATTCCAAAAT
1 AAAAATT-CAAAAT
49213327 TTATATTTTT
Statistics
Matches: 45, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
17 4 0.09
18 1 0.02
19 17 0.38
20 18 0.40
21 5 0.11
ACGTcount: A:0.58, C:0.10, G:0.00, T:0.32
Consensus pattern (19 bp):
AAAAATTCAAAATCATTTT
Found at i:49213328 original size:18 final size:19
Alignment explanation
Indices: 49213255--49213331 Score: 72
Period size: 19 Copynumber: 4.1 Consensus size: 19
49213245 AAAATACAAA
49213255 AAAAATTCAAAATCATTT-T
1 AAAAATTCAAAA-CATTTAT
*
49213274 AAAAAATTCAAAATAAATTT-T
1 -AAAAATTC-AAA-ACATTTAT
49213295 -AAAATTCAAAACATTTAT
1 AAAAATTCAAAACATTTAT
*
49213313 AAAAATTCCAAA-ATTTAT
1 AAAAATTCAAAACATTTAT
49213331 A
1 A
49213332 TTTTTAAAAA
Statistics
Matches: 50, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
17 5 0.10
18 11 0.22
19 17 0.34
20 8 0.16
21 8 0.16
22 1 0.02
ACGTcount: A:0.57, C:0.09, G:0.00, T:0.34
Consensus pattern (19 bp):
AAAAATTCAAAACATTTAT
Found at i:49213360 original size:19 final size:21
Alignment explanation
Indices: 49213336--49213379 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 21
49213326 TTTATATTTT
*
49213336 TAAAAATTTATAAA-AAT-TA
1 TAAAAAATTATAAAGAATATA
*
49213355 TAAAAAATTCTAAAGAATATA
1 TAAAAAATTATAAAGAATATA
49213376 TAAA
1 TAAA
49213380 GAAAGTTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 12 0.57
20 3 0.14
21 6 0.29
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (21 bp):
TAAAAAATTATAAAGAATATA
Found at i:49214800 original size:18 final size:19
Alignment explanation
Indices: 49214766--49214814 Score: 55
Period size: 18 Copynumber: 2.5 Consensus size: 19
49214756 AATTTTTTAT
*
49214766 TAAATTATTTATGTAA-TA
1 TAAATTATTTATATAATTA
*
49214784 TAAATTATTTTTATAATTA
1 TAAATTATTTATATAATTA
49214803 TATTAATTATTT
1 TA--AATTATTT
49214815 GGATTAAGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 14 0.54
19 4 0.15
21 8 0.31
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (19 bp):
TAAATTATTTATATAATTA
Found at i:49215351 original size:29 final size:29
Alignment explanation
Indices: 49215285--49215352 Score: 77
Period size: 29 Copynumber: 2.3 Consensus size: 29
49215275 AAATAATATA
49215285 TTTAAATAAATTTAAATGATTTTTACTAT
1 TTTAAATAAATTTAAATGATTTTTACTAT
** *
49215314 TTTTTATAAATTTACAAT-TTTTTTAC-AT
1 TTTAAATAAATTTA-AATGATTTTTACTAT
49215342 TTTAAAATAAA
1 TTT-AAATAAA
49215353 ATTTTAATTT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
28 5 0.16
29 24 0.75
30 3 0.09
ACGTcount: A:0.41, C:0.04, G:0.01, T:0.53
Consensus pattern (29 bp):
TTTAAATAAATTTAAATGATTTTTACTAT
Found at i:49215859 original size:11 final size:11
Alignment explanation
Indices: 49215843--49215874 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
49215833 CACTATTCAC
49215843 CTAAACCCAAT
1 CTAAACCCAAT
49215854 CTAAACCCAAT
1 CTAAACCCAAT
49215865 CTAAACCCAA
1 CTAAACCCAA
49215875 GTATTCAACC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.47, C:0.38, G:0.00, T:0.16
Consensus pattern (11 bp):
CTAAACCCAAT
Found at i:49216028 original size:9 final size:9
Alignment explanation
Indices: 49216014--49216080 Score: 84
Period size: 9 Copynumber: 7.4 Consensus size: 9
49216004 ATAGTGATTC
49216014 AATTCGGTT
1 AATTCGGTT
49216023 AATTCGGTT
1 AATTCGGTT
49216032 AATTCGAG-T
1 AATTCG-GTT
*
49216041 AATTCGGGT
1 AATTCGGTT
*
49216050 AAGTT-GGCT
1 AA-TTCGGTT
49216059 AATTCGGTT
1 AATTCGGTT
49216068 AATTCGGTT
1 AATTCGGTT
49216077 AATT
1 AATT
49216081 TTTAACCAAA
Statistics
Matches: 52, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
8 3 0.06
9 46 0.88
10 3 0.06
ACGTcount: A:0.25, C:0.10, G:0.24, T:0.40
Consensus pattern (9 bp):
AATTCGGTT
Found at i:49220071 original size:14 final size:14
Alignment explanation
Indices: 49220052--49220079 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
49220042 ACCTTTTAAG
49220052 GAACTATAGGGACA
1 GAACTATAGGGACA
49220066 GAACTATAGGGACA
1 GAACTATAGGGACA
49220080 TGTGACTAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.14, G:0.29, T:0.14
Consensus pattern (14 bp):
GAACTATAGGGACA
Found at i:49222468 original size:37 final size:37
Alignment explanation
Indices: 49222418--49222492 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
49222408 GGAGGAAAAT
* *
49222418 GAGAGGATGGGAATTTAGTTGATGGCTATGGTGACTA
1 GAGAGGATGGGAATTTAGTTGATGGCTACGGAGACTA
49222455 GAGAGGATGGGAATTTAGTTGATGGCTACGGAGACTA
1 GAGAGGATGGGAATTTAGTTGATGGCTACGGAGACTA
49222492 G
1 G
49222493 CCTATAATAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.28, C:0.07, G:0.39, T:0.27
Consensus pattern (37 bp):
GAGAGGATGGGAATTTAGTTGATGGCTACGGAGACTA
Found at i:49223969 original size:28 final size:28
Alignment explanation
Indices: 49223929--49223983 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
49223919 TTTCTTACGT
*
49223929 CCCGACGGACTT-ACCCTGTGTTTATTGC
1 CCCGACGGACTTAACCC-GTATTTATTGC
*
49223957 CCCGGCGGACTTAACCCGTATTTATTG
1 CCCGACGGACTTAACCCGTATTTATTG
49223984 TCTCAACGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 20 0.83
29 4 0.17
ACGTcount: A:0.16, C:0.31, G:0.22, T:0.31
Consensus pattern (28 bp):
CCCGACGGACTTAACCCGTATTTATTGC
Found at i:49224037 original size:33 final size:33
Alignment explanation
Indices: 49223990--49224135 Score: 166
Period size: 33 Copynumber: 4.4 Consensus size: 33
49223980 ATTGTCTCAA
* * * *
49223990 CGGAATATCTCTATTTTGTGTTTGCTATCCCAG
1 CGGACTATCTCTATTATATGTTTACTATCCCAG
** * *
49224023 CAAACTATCTCTATTATGTGTTTACTATCTCAG
1 CGGACTATCTCTATTATATGTTTACTATCCCAG
* *
49224056 CGGACTATCTCTATTATATGTTTATTGTCCCAG
1 CGGACTATCTCTATTATATGTTTACTATCCCAG
* * * *
49224089 CGGACTATCTTTGTTTTATGTTTACTATCCCAA
1 CGGACTATCTCTATTATATGTTTACTATCCCAG
49224122 CGGACTATCTCTAT
1 CGGACTATCTCTAT
49224136 GGATGTAGTG
Statistics
Matches: 93, Mismatches: 20, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
33 93 1.00
ACGTcount: A:0.22, C:0.22, G:0.14, T:0.42
Consensus pattern (33 bp):
CGGACTATCTCTATTATATGTTTACTATCCCAG
Found at i:49228654 original size:13 final size:13
Alignment explanation
Indices: 49228597--49228721 Score: 117
Period size: 13 Copynumber: 9.3 Consensus size: 13
49228587 TGATATACAA
*
49228597 AAATGATTATGTG
1 AAATGATTATATG
49228610 TTAAATG-TGTATATG
1 --AAATGAT-TATATG
* *
49228625 AAATGATAAAAATG
1 AAATGAT-TATATG
* *
49228639 AAATGTTTAGATG
1 AAATGATTATATG
* *
49228652 AAATGGTTATACG
1 AAATGATTATATG
49228665 AAATGATTATATG
1 AAATGATTATATG
49228678 AAATGATTATATG
1 AAATGATTATATG
*
49228691 AAATGCTTATATG
1 AAATGATTATATG
*
49228704 AAATGGTTATATAG
1 AAATGATTATAT-G
49228718 AAAT
1 AAAT
49228722 AGATGTATAA
Statistics
Matches: 93, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
13 66 0.71
14 17 0.18
15 10 0.11
ACGTcount: A:0.44, C:0.02, G:0.18, T:0.36
Consensus pattern (13 bp):
AAATGATTATATG
Found at i:49246562 original size:5 final size:5
Alignment explanation
Indices: 49246552--49246576 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
49246542 CTTTATTTGG
49246552 TTTAT TTTAT TTTAT TTTAT TTTAT
1 TTTAT TTTAT TTTAT TTTAT TTTAT
49246577 GTATGTGGGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTAT
Found at i:49246907 original size:50 final size:49
Alignment explanation
Indices: 49246836--49247182 Score: 178
Period size: 50 Copynumber: 6.9 Consensus size: 49
49246826 TGTAATGTCG
* * *
49246836 GGGAAGCAAGATTC-ATCGTTGTGGTTTCAATCTGTTCCACTACACCGTCT
1 GGGAAGCAAGATTCGCT-GTTGTGGTTT-AATCTGTTCAACTGCACCGTCT
* * * * * ** *
49246886 GGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTTTAACTGTAGTGTCA
1 GGGAAGCAAGATTCGCTGTTGT-GGTTTAATC--TGTTCAACTGCACCGTCT
*** * * **
49246938 GGGAAGCAAGATTCGCCCATGTGGCTTCAATCTGTTCCACTGCACCACCT
1 GGGAAGCAAGATTCGCTGTTGTGG-TTTAATCTGTTCAACTGCACCGTCT
* * * * * * ** *
49246988 AGGAAGTAAGATTCGTTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCG
1 GGGAAGCAAGATTCGCTGTTGT-GGTTTAATCTGTTCAACTGCACCGTCT
** *
49247038 GGGAAGCAAGATTCGCCATTGTGGCTTTAATCTGTTCTACTGCACC-T-T
1 GGGAAGCAAGATTCGCTGTTGTGG-TTTAATCTGTTCAACTGCACCGTCT
* * * * * * ** *
49247086 GGGAAGTAAGATTCGCTATTGTAGCTTTAATCTTTTTAATTGCAATGTCA
1 GGGAAGCAAGATTCGCTGTTGT-GGTTTAATCTGTTCAACTGCACCGTCT
* * * * * *
49247136 GGGACGTAAGATTCACCGTTGTAGCTTTAATCTGTTCCACTGCACCG
1 GGGAAGCAAGATTCGCTGTTGT-GGTTTAATCTGTTCAACTGCACCG
49247183 CAATCTTCAA
Statistics
Matches: 213, Mismatches: 74, Indels: 20
0.69 0.24 0.07
Matches are distributed among these distances:
48 35 0.16
49 4 0.02
50 133 0.62
51 7 0.03
52 34 0.16
ACGTcount: A:0.23, C:0.20, G:0.22, T:0.35
Consensus pattern (49 bp):
GGGAAGCAAGATTCGCTGTTGTGGTTTAATCTGTTCAACTGCACCGTCT
Found at i:49246944 original size:102 final size:99
Alignment explanation
Indices: 49246804--49247182 Score: 456
Period size: 98 Copynumber: 3.8 Consensus size: 99
49246794 AAGATTTAAT
* ** * * *
49246804 TTGTAACTTTAATCTGCTTAACTGTAATGTCGGGGAAGCAAGATTCATCGTTGTGGTTTCAATCT
1 TTGTAGCTTTAATCTTTTTAACTGCAATGTCAGGGAAGCAAGATTCACCGTTGTGGTTT-AATCT
*
49246869 GTTCCACTACACCGTCTGGGAAGTAAGATTCGCTG
65 GTTCCACTGCACCGTCTGGGAAGTAAGATTCGCTG
* * * ** *
49246904 TTGTAGCTTTAATCTTTTTTTAACTGTAGTGTCAGGGAAGCAAGATTCGCCCATGTGGCTTCAAT
1 TTGTAGCTTTAATC--TTTTTAACTGCAATGTCAGGGAAGCAAGATTCACCGTTGTGG-TTTAAT
** * *
49246969 CTGTTCCACTGCACCACCTAGGAAGTAAGATTCGTTG
63 CTGTTCCACTGCACCGTCTGGGAAGTAAGATTCGCTG
* * *
49247006 TTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCATTGTGGCTTTAATCT
1 TTGTAGCTTTAATCTTTTTAACTGCAATGTCAGGGAAGCAAGATTCACCGTTGTGG-TTTAATCT
* *
49247071 GTTCTACTGCACC-T-TGGGAAGTAAGATTCGCTA
65 GTTCCACTGCACCGTCTGGGAAGTAAGATTCGCTG
* * * *
49247104 TTGTAGCTTTAATCTTTTTAATTGCAATGTCAGGGACGTAAGATTCACCGTTGTAGCTTTAATCT
1 TTGTAGCTTTAATCTTTTTAACTGCAATGTCAGGGAAGCAAGATTCACCGTTGT-GGTTTAATCT
49247169 GTTCCACTGCACCG
65 GTTCCACTGCACCG
49247183 CAATCTTCAA
Statistics
Matches: 240, Mismatches: 34, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
98 84 0.35
99 1 0.00
100 70 0.29
102 83 0.35
103 2 0.01
ACGTcount: A:0.23, C:0.20, G:0.22, T:0.35
Consensus pattern (99 bp):
TTGTAGCTTTAATCTTTTTAACTGCAATGTCAGGGAAGCAAGATTCACCGTTGTGGTTTAATCTG
TTCCACTGCACCGTCTGGGAAGTAAGATTCGCTG
Found at i:49249596 original size:18 final size:18
Alignment explanation
Indices: 49249575--49249688 Score: 78
Period size: 18 Copynumber: 6.5 Consensus size: 18
49249565 TCATTTTGAT
*
49249575 TTTTATTTTGATTTTTTC
1 TTTTATTTTCATTTTTTC
* *
49249593 TTTTTTTTTCTTTTTTTC
1 TTTTATTTTCATTTTTTC
49249611 -TTTATTTT--TTGTTTT-
1 TTTTATTTTCATT-TTTTC
*
49249626 TTTTATTTTCATTTTTTTA
1 TTTTATTTTCA-TTTTTTC
* * *
49249645 TTTTTTTTTTATTGATTT-
1 TTTTATTTTCATT-TTTTC
*
49249663 TTTTA-TTTCAATTTTTC
1 TTTTATTTTCATTTTTTC
*
49249680 TTTTCTTTT
1 TTTTATTTT
49249689 TTTATTTTGA
Statistics
Matches: 75, Mismatches: 12, Indels: 18
0.71 0.11 0.17
Matches are distributed among these distances:
15 2 0.03
16 15 0.20
17 16 0.21
18 28 0.37
19 14 0.19
ACGTcount: A:0.10, C:0.06, G:0.03, T:0.82
Consensus pattern (18 bp):
TTTTATTTTCATTTTTTC
Found at i:49249621 original size:37 final size:36
Alignment explanation
Indices: 49249580--49249700 Score: 99
Period size: 37 Copynumber: 3.2 Consensus size: 36
49249570 TTGATTTTTA
49249580 TTTTGATTTTTTCTTTTTTTTTCTTTT-TTTCTTTATT
1 TTTTGATTTTTT-TTTTTTTTTCTTTTATTT-TTTATT
49249617 TTTTG-TTTTTTTTATTTTCATTT-TTTTATTTTTT-TT
1 TTTTGATTTTTTTT-TTTT--TTTCTTTTATTTTTTATT
* *
49249653 TTATTGATTTTTTTATTTCAATTTTTCTTTTCTTTTTT-TA
1 TT-TTGATTTTTTT-TTT---TTTTTCTTTTATTTTTTATT
49249693 TTTTGATT
1 TTTTGATT
49249701 GTGATTTTTT
Statistics
Matches: 71, Mismatches: 2, Indels: 20
0.76 0.02 0.22
Matches are distributed among these distances:
35 2 0.03
36 14 0.20
37 15 0.21
38 15 0.21
39 10 0.14
40 13 0.18
41 2 0.03
ACGTcount: A:0.10, C:0.06, G:0.03, T:0.81
Consensus pattern (36 bp):
TTTTGATTTTTTTTTTTTTTTCTTTTATTTTTTATT
Found at i:49249634 original size:57 final size:60
Alignment explanation
Indices: 49249559--49249711 Score: 142
Period size: 57 Copynumber: 2.6 Consensus size: 60
49249549 TTCTTTTTTC
** * * * *
49249559 TTTTTGTCATTTTGATTTTTATTTTGATTT-TTTCTTTTTTT-TT-CTTTTTTTCTTT-AT
1 TTTTTGTTTTTTTTATTTTTATTTTGATTTATTT-TTTTTTTATTGATTTTTTTATTTCAA
*
49249616 TTTTTGTTTTTTTTATTTTCATTTT--TTTATTTTTTTTTTATTGATTTTTTTATTTCAA
1 TTTTTGTTTTTTTTATTTTTATTTTGATTTATTTTTTTTTTATTGATTTTTTTATTTCAA
* *
49249674 TTTTT-CTTTTCTT-TTTTTATTTTGATTGTGATTTTTTT
1 TTTTTGTTTTTTTTATTTTTATTTTGATT-T-ATTTTTTT
49249712 GATTGAATTT
Statistics
Matches: 78, Mismatches: 10, Indels: 13
0.77 0.10 0.13
Matches are distributed among these distances:
55 10 0.13
56 14 0.18
57 37 0.47
58 8 0.10
59 1 0.01
60 8 0.10
ACGTcount: A:0.10, C:0.05, G:0.05, T:0.79
Consensus pattern (60 bp):
TTTTTGTTTTTTTTATTTTTATTTTGATTTATTTTTTTTTTATTGATTTTTTTATTTCAA
Found at i:49249666 original size:1 final size:1
Alignment explanation
Indices: 49249586--49249654 Score: 57
Period size: 1 Copynumber: 69.0 Consensus size: 1
49249576 TTTATTTTGA
* * * * * * ** *
49249586 TTTTTTCTTTTTTTTTCTTTTTTTCTTTATTTTTTGTTTTTTTTATTTTCATTTTTTTATTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
49249651 TTTT
1 TTTT
49249655 ATTGATTTTT
Statistics
Matches: 51, Mismatches: 17, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 51 1.00
ACGTcount: A:0.06, C:0.06, G:0.01, T:0.87
Consensus pattern (1 bp):
T
Found at i:49249666 original size:25 final size:24
Alignment explanation
Indices: 49249574--49249666 Score: 66
Period size: 25 Copynumber: 3.8 Consensus size: 24
49249564 GTCATTTTGA
* *
49249574 TTTTTATTTTGATTTTTTCTTT-TT
1 TTTTTTTTTTTATTTTTT-TTTATT
* *
49249598 TTTTCTTTTTTTCTTTATTTTTTGTT
1 TTTT-TTTTTTTATTT-TTTTTTATT
*
49249624 TTTTTTATTTTCA--TTTTTTTATT
1 TTTTTT-TTTTTATTTTTTTTTATT
*
49249647 TTTTTTTTATTGATTTTTTT
1 TTTTTTTT-TTTATTTTTTT
49249667 ATTTCAATTT
Statistics
Matches: 55, Mismatches: 7, Indels: 13
0.73 0.09 0.17
Matches are distributed among these distances:
22 2 0.04
23 17 0.31
24 5 0.09
25 18 0.33
26 13 0.24
ACGTcount: A:0.09, C:0.04, G:0.03, T:0.84
Consensus pattern (24 bp):
TTTTTTTTTTTATTTTTTTTTATT
Found at i:49249670 original size:8 final size:8
Alignment explanation
Indices: 49249586--49249670 Score: 65
Period size: 8 Copynumber: 11.2 Consensus size: 8
49249576 TTTATTTTGA
*
49249586 TTTTTTCT
1 TTTTTTAT
49249594 TTTTTT-T
1 TTTTTTAT
*
49249601 TCTTTT-T
1 TTTTTTAT
*
49249608 TTCTTTAT
1 TTTTTTAT
49249616 TTTTTGT-T
1 TTTTT-TAT
49249624 TTTTTTA-
1 TTTTTTAT
*
49249631 -TTTTCAT
1 TTTTTTAT
49249638 TTTTTTAT
1 TTTTTTAT
49249646 TTTTTT-T
1 TTTTTTAT
* *
49249653 TTATTGAT
1 TTTTTTAT
49249661 TTTTTTAT
1 TTTTTTAT
49249669 TT
1 TT
49249671 CAATTTTTCT
Statistics
Matches: 61, Mismatches: 10, Indels: 12
0.73 0.12 0.14
Matches are distributed among these distances:
6 5 0.08
7 17 0.28
8 38 0.62
9 1 0.02
ACGTcount: A:0.08, C:0.05, G:0.02, T:0.85
Consensus pattern (8 bp):
TTTTTTAT
Found at i:49257464 original size:42 final size:41
Alignment explanation
Indices: 49257373--49257500 Score: 118
Period size: 42 Copynumber: 3.1 Consensus size: 41
49257363 ATGAGCTTCA
* * * *
49257373 GTTAACTCATATGAG-TTCCAGTTTAACCCTAATGAG-TTTC
1 GTTAGCTCTTATGAGCTT-CAGTTTAACCCTTATGGGTTTTC
49257413 AGCTTAGCTCTT-TCGAGCTTCAGTTTAACCCTTATGGGTTTTC
1 -G-TTAGCTCTTAT-GAGCTTCAGTTTAACCCTTATGGGTTTTC
* * * *
49257456 GTTCAGCTCTTATGAGCTTCCGTTCAACTCTTATGGGTTTCC
1 GTT-AGCTCTTATGAGCTTCAGTTTAACCCTTATGGGTTTTC
49257498 GTT
1 GTT
49257501 TAGCACTTGC
Statistics
Matches: 73, Mismatches: 8, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
41 4 0.05
42 62 0.85
43 7 0.10
ACGTcount: A:0.19, C:0.23, G:0.18, T:0.41
Consensus pattern (41 bp):
GTTAGCTCTTATGAGCTTCAGTTTAACCCTTATGGGTTTTC
Found at i:49257469 original size:21 final size:21
Alignment explanation
Indices: 49257443--49257500 Score: 80
Period size: 21 Copynumber: 2.8 Consensus size: 21
49257433 CAGTTTAACC
* *
49257443 CTTATGGGTTTTCGTTCAGCT
1 CTTATGGGTTTCCGTTCAACT
* *
49257464 CTTATGAGCTTCCGTTCAACT
1 CTTATGGGTTTCCGTTCAACT
49257485 CTTATGGGTTTCCGTT
1 CTTATGGGTTTCCGTT
49257501 TAGCACTTGC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.12, C:0.22, G:0.21, T:0.45
Consensus pattern (21 bp):
CTTATGGGTTTCCGTTCAACT
Found at i:49259749 original size:59 final size:59
Alignment explanation
Indices: 49259652--49259809 Score: 214
Period size: 59 Copynumber: 2.7 Consensus size: 59
49259642 GAGGGAGAAA
* *
49259652 CCCATAGCA-CTTACTGTGATAGTCCGTCGGGACTGTAAACACACGATTCTGTGTGTTGC
1 CCCATAGCACCTT-CTGTGAAAGTCCGTCGGGACAGTAAACACACGATTCTGTGTGTTGC
* * *
49259711 CTCATAGCACCTTCTGTGAAAGTCTG-CTGGGACAGTAAACACATGATTCTGTGTGTTGC
1 CCCATAGCACCTTCTGTGAAAGTCCGTC-GGGACAGTAAACACACGATTCTGTGTGTTGC
*
49259770 CCCAT-GACACCTTCTGTGAAAGTCCGTCGGGACAATAAAC
1 CCCATAG-CACCTTCTGTGAAAGTCCGTCGGGACAGTAAAC
49259810 TCGTAATTTT
Statistics
Matches: 87, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
58 2 0.02
59 81 0.93
60 4 0.05
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (59 bp):
CCCATAGCACCTTCTGTGAAAGTCCGTCGGGACAGTAAACACACGATTCTGTGTGTTGC
Found at i:49259829 original size:59 final size:59
Alignment explanation
Indices: 49259665--49259829 Score: 138
Period size: 59 Copynumber: 2.8 Consensus size: 59
49259655 ATAGCACTTA
* ** ** * * *
49259665 CTGTGATAGTCCG-TCGGGACTGTAAACACACGATTCTGTGTGTTGCCTCAT-AGCACCTT
1 CTGTGAAAGTCCGCT-GGGACAATAAACACATAATTCTATGTATTGCCCCATGA-CACCTT
* * * * *
49259724 CTGTGAAAGTCTGCTGGGACAGTAAACACATGATTCTGTGTGTTGCCCCATGACACCTT
1 CTGTGAAAGTCCGCTGGGACAATAAACACATAATTCTATGTATTGCCCCATGACACCTT
* * *
49259783 CTGTGAAAGTCCG-TCGGGACAATAAACTCGTAATTTTATGTATTGCC
1 CTGTGAAAGTCCGCT-GGGACAATAAACACATAATTCTATGTATTGCC
49259830 TATGTGTCGT
Statistics
Matches: 90, Mismatches: 13, Indels: 6
0.83 0.12 0.06
Matches are distributed among these distances:
58 1 0.01
59 87 0.97
60 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.30
Consensus pattern (59 bp):
CTGTGAAAGTCCGCTGGGACAATAAACACATAATTCTATGTATTGCCCCATGACACCTT
Found at i:49264683 original size:13 final size:15
Alignment explanation
Indices: 49264665--49264706 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 15
49264655 TATTGTTTGA
49264665 TAAAATT-ATTTT-T
1 TAAAATTAATTTTAT
49264678 TAAAATTTAATTTTAT
1 TAAAA-TTAATTTTAT
49264694 TAAAATTTAATTT
1 TAAAA-TTAATTT
49264707 AATTTTATCT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.19
14 2 0.08
15 5 0.19
16 14 0.54
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
TAAAATTAATTTTAT
Done.