Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67659327
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 461372 characters in sequence are not A, C, G, or T
File 156 of 216
Found at i:49264698 original size:16 final size:15
Alignment explanation
Indices: 49264672--49264706 Score: 61
Period size: 16 Copynumber: 2.3 Consensus size: 15
49264662 TGATAAAATT
49264672 ATTTTTTAAAATTTA
1 ATTTTTTAAAATTTA
49264687 ATTTTATTAAAATTTA
1 ATTTT-TTAAAATTTA
49264703 ATTT
1 ATTT
49264707 AATTTTATCT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 5 0.26
16 14 0.74
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (15 bp):
ATTTTTTAAAATTTA
Found at i:49265278 original size:10 final size:10
Alignment explanation
Indices: 49265257--49265352 Score: 99
Period size: 10 Copynumber: 9.5 Consensus size: 10
49265247 TCTCAACAAA
49265257 AATTATAAAAT
1 AATT-TAAAAT
*
49265268 AATTCAAAAT
1 AATTTAAAAT
49265278 AATTTTAAAAT
1 AA-TTTAAAAT
*
49265289 AATTCAAAAT
1 AATTTAAAAT
49265299 AATTTTAAAAT
1 AA-TTTAAAAT
49265310 AATTTAAAAT
1 AATTTAAAAT
**
49265320 AATTTTTAA-
1 AATTTAAAAT
49265329 AATTTAAAAT
1 AATTTAAAAT
49265339 -ATTTATAAA-
1 AATTTA-AAAT
49265348 AATTT
1 AATTT
49265353 TTAAAAAATA
Statistics
Matches: 72, Mismatches: 8, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
9 12 0.17
10 38 0.53
11 22 0.31
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (10 bp):
AATTTAAAAT
Found at i:49265286 original size:21 final size:21
Alignment explanation
Indices: 49265257--49265331 Score: 123
Period size: 21 Copynumber: 3.5 Consensus size: 21
49265247 TCTCAACAAA
*
49265257 AATTATAAAATAATTCAAAAT
1 AATTTTAAAATAATTCAAAAT
49265278 AATTTTAAAATAATTCAAAAT
1 AATTTTAAAATAATTCAAAAT
*
49265299 AATTTTAAAATAATTTAAAAT
1 AATTTTAAAATAATTCAAAAT
49265320 AATTTTTAAAAT
1 AA-TTTTAAAAT
49265332 TTAAAATATT
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
21 42 0.82
22 9 0.18
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (21 bp):
AATTTTAAAATAATTCAAAAT
Found at i:49265298 original size:31 final size:31
Alignment explanation
Indices: 49265264--49265324 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
49265254 AAAAATTATA
* *
49265264 AAATAATTCAAAATAATTTTAAAATAATTCA
1 AAATAATTCAAAATAATTTCAAAATAATTTA
*
49265295 AAATAATTTTAAAATAATTT-AAAATAATTT
1 AAATAA-TTCAAAATAATTTCAAAATAATTT
49265325 TTAAAATTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
31 15 0.56
32 12 0.44
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.39
Consensus pattern (31 bp):
AAATAATTCAAAATAATTTCAAAATAATTTA
Found at i:49265347 original size:18 final size:19
Alignment explanation
Indices: 49265268--49265348 Score: 76
Period size: 21 Copynumber: 4.1 Consensus size: 19
49265258 ATTATAAAAT
*
49265268 AATTCAAAATAATTT-TAA
1 AATTTAAAATAATTTATAA
*
49265286 AATAATTCAAAATAATTTTAAAA
1 AAT--TT-AAAATAA-TTTATAA
*
49265309 TAATTTAAAATAATTTTTAA
1 -AATTTAAAATAATTTATAA
49265329 AATTTAAAAT-ATTTATAA
1 AATTTAAAATAATTTATAA
49265347 AA
1 AA
49265349 ATTTTTAAAA
Statistics
Matches: 52, Mismatches: 5, Indels: 12
0.75 0.07 0.17
Matches are distributed among these distances:
18 12 0.23
19 10 0.19
20 6 0.12
21 14 0.27
22 5 0.10
23 2 0.04
24 3 0.06
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (19 bp):
AATTTAAAATAATTTATAA
Found at i:49265349 original size:19 final size:19
Alignment explanation
Indices: 49265310--49265376 Score: 64
Period size: 19 Copynumber: 3.4 Consensus size: 19
49265300 ATTTTAAAAT
*
49265310 AATTTAAAATAATTT-TTAA
1 AATTTAAAAT-ATTTATAAA
49265329 AATTTAAAATATTTATAAA
1 AATTTAAAATATTTATAAA
* *
49265348 AATTTTTAAAAAATATATAAAA
1 AA--TTTAAAATATTTAT-AAA
49265370 AATTTAA
1 AATTTAA
49265377 GATTTAAAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
18 4 0.10
19 15 0.37
20 5 0.12
21 12 0.29
22 5 0.12
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (19 bp):
AATTTAAAATATTTATAAA
Found at i:49265357 original size:21 final size:21
Alignment explanation
Indices: 49265331--49265370 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
49265321 ATTTTTAAAA
* *
49265331 TTTAAAATATTTATAAAAATT
1 TTTAAAAAATATATAAAAATT
49265352 TTTAAAAAATATATAAAAA
1 TTTAAAAAATATATAAAAA
49265371 ATTTAAGATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (21 bp):
TTTAAAAAATATATAAAAATT
Found at i:49265359 original size:11 final size:11
Alignment explanation
Indices: 49265334--49265372 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
49265324 TTTAAAATTT
49265334 AAAATATTTATA
1 AAAATATTTA-A
*
49265346 AAAATTTTTAA
1 AAAATATTTAA
*
49265357 AAAATATATAA
1 AAAATATTTAA
49265368 AAAAT
1 AAAAT
49265373 TTAAGATTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
11 15 0.62
12 9 0.38
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (11 bp):
AAAATATTTAA
Found at i:49272777 original size:7 final size:8
Alignment explanation
Indices: 49272754--49272778 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
49272744 AAAAAGAGAG
49272754 AAGGAAAA
1 AAGGAAAA
49272762 AAGGAAAA
1 AAGGAAAA
49272770 AAGGAAAA
1 AAGGAAAA
49272778 A
1 A
49272779 TAAAAGGAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (8 bp):
AAGGAAAA
Found at i:49273658 original size:14 final size:15
Alignment explanation
Indices: 49273632--49273693 Score: 67
Period size: 14 Copynumber: 4.1 Consensus size: 15
49273622 TTGAGTAAAA
49273632 AAAAAGTGAAAAATG
1 AAAAAGTGAAAAATG
49273647 AAAAAGTG-AAAATG
1 AAAAAGTGAAAAATG
*
49273661 AAAAA-TAAAAAATG
1 AAAAAGTGAAAAATG
49273675 ATGCAAAAGT-AAAAATG
1 A---AAAAGTGAAAAATG
49273692 AA
1 AA
49273694 GAGGCTAAGG
Statistics
Matches: 41, Mismatches: 1, Indels: 11
0.77 0.02 0.21
Matches are distributed among these distances:
13 1 0.02
14 19 0.46
15 8 0.20
17 12 0.29
18 1 0.02
ACGTcount: A:0.68, C:0.02, G:0.16, T:0.15
Consensus pattern (15 bp):
AAAAAGTGAAAAATG
Found at i:49273689 original size:7 final size:7
Alignment explanation
Indices: 49273632--49273675 Score: 54
Period size: 7 Copynumber: 6.1 Consensus size: 7
49273622 TTGAGTAAAA
49273632 AAAAAGTG
1 AAAAA-TG
49273640 AAAAATG
1 AAAAATG
49273647 AAAAAGTG
1 AAAAA-TG
49273655 -AAAATG
1 AAAAATG
*
49273661 AAAAATA
1 AAAAATG
49273668 AAAAATG
1 AAAAATG
49273675 A
1 A
49273676 TGCAAAAGTA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
6 2 0.06
7 23 0.72
8 7 0.22
ACGTcount: A:0.70, C:0.00, G:0.16, T:0.14
Consensus pattern (7 bp):
AAAAATG
Found at i:49275030 original size:44 final size:44
Alignment explanation
Indices: 49274926--49275016 Score: 130
Period size: 44 Copynumber: 2.1 Consensus size: 44
49274916 TGGTGAAATC
* * *
49274926 ACAAGTTCTAGCTCTCTGACCAGCAGTGGAATAGGTTGAAGATT
1 ACAAGTCCTAACTCCCTGACCAGCAGTGGAATAGGTTGAAGATT
*
49274970 GCAAGTCCTAACTCCCTGACCAGCAGTGGAATAGGTTGGAA-ATT
1 ACAAGTCCTAACTCCCTGACCAGCAGTGGAATAGGTT-GAAGATT
49275014 ACA
1 ACA
49275017 GATCTTATCT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
44 38 0.93
45 3 0.07
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.24
Consensus pattern (44 bp):
ACAAGTCCTAACTCCCTGACCAGCAGTGGAATAGGTTGAAGATT
Found at i:49275340 original size:129 final size:128
Alignment explanation
Indices: 49274972--49275365 Score: 573
Period size: 128 Copynumber: 3.1 Consensus size: 128
49274962 TGAAGATTGC
** *
49274972 AAGTCCTA-ACTCCCTGACCAGCAGTGGAATAGGTTGGAAATTACAGATCTTATCTCCCTAAGCA
1 AAGTCCTATA-TCCCTGGTCAGCAGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAGCA
** * * **
49275036 GTAGTAGAGCAGATCGAAGAC-GACAAATCTTATCTTCAAGAGTAAGGAAACAGATTTAAGCCTC
65 GTAGCGGAGCAGATCGAAGACTG-CGAATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGCCAA
*
49275100 AAGTCCTATTTCCCTGGTCAGCAGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAGCAG
1 AAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAGCAG
*
49275165 TAGCGGAGCAGATCGAA-AATG-GAAAATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGCCAA
66 TAGCGGAGCAGATCGAAGACTGCG--AATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGCCAA
49275228 AAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCA
1 AAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTT-GGAAATTACAGATCTTGTCTCCCTAAGCA
** *
49275293 GTAGCGGAGCAGATCGAAGACTGCGAATCTTATCTTCAACTGTAAGGAAGTAGATTTAAGCCACA
65 GTAGCGGAGCAGATCGAAGACTGCGAATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGCCA-A
49275358 AA-TCCTAT
1 AAGTCCTAT
49275366 CTCCTTGAAG
Statistics
Matches: 242, Mismatches: 16, Indels: 15
0.89 0.06 0.05
Matches are distributed among these distances:
127 1 0.00
128 146 0.60
129 88 0.36
130 6 0.02
131 1 0.00
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (128 bp):
AAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAGCAG
TAGCGGAGCAGATCGAAGACTGCGAATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGCCAA
Found at i:49275599 original size:44 final size:44
Alignment explanation
Indices: 49275492--49275610 Score: 107
Period size: 45 Copynumber: 2.7 Consensus size: 44
49275482 AAGCAGGTGT
* * * * *
49275492 TATCCCCCTGAAGTTGCAGTGGGACAGATCGAAGATGACAAATCT
1 TATCTCCCTGAAGTTGCAGTGAG-CAGATTGAAGACGACAAATCC
* * *
49275537 TATCTCCGT-AAGGTTGCAGTGAAGCAGATTGAAGCCGA-TAATCC
1 TATCTCCCTGAA-GTTGCAGTG-AGCAGATTGAAGACGACAAATCC
*
49275581 TATCTCCCTGAAGTTGCAGTGGAGCGGATT
1 TATCTCCCTGAAGTTGCAGT-GAGCAGATT
49275611 AAAATAATAG
Statistics
Matches: 60, Mismatches: 10, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
44 29 0.48
45 30 0.50
46 1 0.02
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (44 bp):
TATCTCCCTGAAGTTGCAGTGAGCAGATTGAAGACGACAAATCC
Found at i:49275629 original size:44 final size:44
Alignment explanation
Indices: 49275491--49275870 Score: 129
Period size: 44 Copynumber: 8.7 Consensus size: 44
49275481 TAAGCAGGTG
* * * * * *
49275491 TTATCCCCCTGAAGTTGCAGTGG-GACAGATCGAAGATGACAAATC
1 TTATCTCCCTGAAGTTGCAGTGGAG-CAGAT-TAAAATAATAGATC
* * ****
49275536 TTATCTCCGT-AAGGTTGCAGTGAAGCAGATTGAAGCCGATA-ATC
1 TTATCTCCCTGAA-GTTGCAGTGGAGCAGATT-AAAATAATAGATC
* *
49275580 CTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATAATAGATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATAATAGATC
** * ** *** * *
49275624 TTATCTTTCTGAAGTTGCAGTAGAGTGGA-TGGCAT--CAGGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATAATAGATC
* *
49275665 TTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAGAAA-ACA-AG-TC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTA-AAATA-ATAGATC
* * ** * *** * *
49275709 TTCT-TCCCCTAAAGTCACAGTGGGGCAGA-CCGAATAAGCAAATC
1 TTATCT-CCCTGAAGTTGCAGTGGAGCAGATTAAAATAA-TAGATC
* * * * *
49275753 TTATCTCCCTG-AGATTACAGTGGAGTAGATTGAAGTCGATA-ATC
1 TTATCTCCCTGAAG-TTGCAGTGGAGCAGATTAAAAT-AATAGATC
* * * * * *
49275797 CTATCTCCCTAAAGTTGTAGTGGAGCGGGTTAAAGTAATAGATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATAATAGATC
* *
49275841 TTATCTCTCTGAAGTTGCAGTAGAGCAGAT
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGAT
49275871 CGCATCAAGT
Statistics
Matches: 241, Mismatches: 72, Indels: 45
0.67 0.20 0.13
Matches are distributed among these distances:
41 30 0.12
42 1 0.00
43 15 0.06
44 155 0.64
45 38 0.16
46 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.27
Consensus pattern (44 bp):
TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATAATAGATC
Found at i:49275845 original size:217 final size:218
Alignment explanation
Indices: 49275358--49275877 Score: 700
Period size: 218 Copynumber: 2.4 Consensus size: 218
49275348 TTAAGCCACA
* * * *
49275358 AATCCTATCTCCTTGAAGTTGTAGTGAAGCGGATTAAAGTAATAAATCTTATCTCTCTAAAGTTG
1 AATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTG
* * * * *
49275423 CAGTAGAGTGGATCGCATTAGGTCTTATCTCTCTAAGGTTGCAGCGGAACAGACTGAGTAAGCAG
66 CAGTAGAGTGGATCGCATCAGGTCTTATCTCCCTAAGGTTGCAGCGGAACAGACTGAGAAAACAA
* * ** * * * * *
49275488 GTGTTATCCCCCTGAAGTTGCAGTGGGACAGATCGAAGATGACAAATCTTATCTCCGTAAGGTTG
131 GTCTTATCCCCCTAAAGTCACAGTGGGACAGACCGAAGAAGACAAATCTTATCTCCCTAAGATTA
49275553 CAGTGAAGCAGATTGAAGCCGAT
196 CAGTGAAGCAGATTGAAGCCGAT
* * *
49275576 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATAATAGATCTTATCTTTCTGAAGTTG
1 AATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTG
* * * *
49275641 CAGTAGAGTGGATGGCATCAGGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAGAAAACAA
66 CAGTAGAGTGGATCGCATCAGGTCTTATCTCCCTAAGGTTGCAGCGGAACAGACTGAGAAAACAA
* * * * *
49275706 GTCTTCTTCCCCTAAAGTCACAGTGGGGCAGACCGAATAAG-CAAATCTTATCTCCCTGAGATTA
131 GTCTTATCCCCCTAAAGTCACAGTGGGACAGACCGAAGAAGACAAATCTTATCTCCCTAAGATTA
* * *
49275770 CAGTGGAGTAGATTGAAGTCGAT
196 CAGTGAAGCAGATTGAAGCCGAT
* *
49275793 AATCCTATCTCCCTAAAGTTGTAGTGGAGCGGGTTAAAGTAATAGATCTTATCTCTCTGAAGTTG
1 AATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTG
**
49275858 CAGTAGAGCAGATCGCATCA
66 CAGTAGAGTGGATCGCATCA
49275878 AGTTTTACCG
Statistics
Matches: 261, Mismatches: 41, Indels: 1
0.86 0.14 0.00
Matches are distributed among these distances:
217 116 0.44
218 145 0.56
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (218 bp):
AATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTG
CAGTAGAGTGGATCGCATCAGGTCTTATCTCCCTAAGGTTGCAGCGGAACAGACTGAGAAAACAA
GTCTTATCCCCCTAAAGTCACAGTGGGACAGACCGAAGAAGACAAATCTTATCTCCCTAAGATTA
CAGTGAAGCAGATTGAAGCCGAT
Found at i:49280869 original size:289 final size:282
Alignment explanation
Indices: 49280346--49280966 Score: 639
Period size: 289 Copynumber: 2.2 Consensus size: 282
49280336 TTTTTAATTT
* * * * * ** *
49280346 AAAAGACTAAAATATCTTCGAATAATATAAGTTATTTTAAATATGGAATGACATTTTTTTAATTT
1 AAAAGACTAAAATACCTTCGAATAATATAACTTATTTTAAATA---CAGGACATCTTCGTAATTC
* *
49280411 CCTAAACAAGTTGGTGCCTAGTTGACTCATGATACCAACTCAGCCAAGAATTTTATTAATAGTTT
63 CCTAAACAAGTTGGTGCCTAGTTGACTCATGATACCAACTCAGCCAAGAATCTTA-TAATAG-AT
* **
49280476 AGATACAATTGATGGAATTAATAAAGTGTGCATAATAAAATTAAAATGTATAAAAGTATTAAAAA
126 AGATACAATTGATGGAAGTAATAAAGTGTGCATAATAAAATTAAAATGTATAAAAGTAAAAAAAA
* * * *
49280541 ACTTTTAGTGGTAAATTAAATATTTTACTAATGCAATTGACTTATGTGGGTTCAAATCTCACCAT
191 ACTTTTAGCGGTAAATTAAAGATTTTACTAATACAATTG----ATGTAGGTTCAAATCTCACCAT
** *
49280606 GTGCATATTTTTATT-G-GTGTTTTAAAGTA
252 ACGCATATTTTTATTAGTGTGTTTTAAAATA
*
49280635 AAAAGATTAAAATACCTTCGAATAATATAACTTATTTTAAATACAGGACATCTTCGTAATTCCCC
1 AAAAGACTAAAATACCTTCGAATAATATAACTTATTTTAAATACAGGACATCTTCGTAATT-CCC
* * * * * *
49280700 TAATCGAGTTGGTGTCTGGTTTACTCAT-ATCACCAACTCAGTCAAGAA-CTTA-AATA-ATAG-
65 TAAACAAGTTGGTGCCTAGTTGACTCATGAT-ACCAACTCAGCCAAGAATCTTATAATAGATAGA
* * *
49280760 TACAATTGATGGAGGTAATAAAGTGTGCATAATAAATTTAGAATGTATAAAAATGTCAAAAAAAA
129 TACAATTGATGGAAGTAATAAAGTGTGCATAATAAAATTAAAATGTAT-AAAA-GT-AAAAAAAA
* * *
49280825 GAGTTTAGGTAAGCGGTAAATTAAAGGTTTTTCTAATACAATTGATGTAGGTTCAAATCTCACCA
191 -ACTTT---T-AGCGGTAAATTAAAGATTTTACTAATACAATTGATGTAGGTTCAAATCTCACCA
* *
49280890 TACGCATATTTTTATTAGTTTTTTTTTAAAATA
251 TACGCATATTTTTATTAG-TGTGTTTTAAAATA
* **
49280923 AAACA-ACTAAAATACCCTT-GAATAATATTACCCATTTTAAATAC
1 AAA-AGACTAAAATA-CCTTCGAATAATATAACTTATTTTAAATAC
49280967 GAAAATACAT
Statistics
Matches: 278, Mismatches: 39, Indels: 31
0.80 0.11 0.09
Matches are distributed among these distances:
281 44 0.16
282 7 0.03
283 2 0.01
284 10 0.04
285 38 0.14
286 19 0.07
287 41 0.15
288 44 0.16
289 73 0.26
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.35
Consensus pattern (282 bp):
AAAAGACTAAAATACCTTCGAATAATATAACTTATTTTAAATACAGGACATCTTCGTAATTCCCT
AAACAAGTTGGTGCCTAGTTGACTCATGATACCAACTCAGCCAAGAATCTTATAATAGATAGATA
CAATTGATGGAAGTAATAAAGTGTGCATAATAAAATTAAAATGTATAAAAGTAAAAAAAAACTTT
TAGCGGTAAATTAAAGATTTTACTAATACAATTGATGTAGGTTCAAATCTCACCATACGCATATT
TTTATTAGTGTGTTTTAAAATA
Found at i:49283759 original size:17 final size:17
Alignment explanation
Indices: 49283733--49283766 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
49283723 TCAAAACAAC
*
49283733 ATAATGAACATTCAAAT
1 ATAATGAACATTAAAAT
*
49283750 ATAATTAACATTAAAAT
1 ATAATGAACATTAAAAT
49283767 GATTACGGTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.56, C:0.09, G:0.03, T:0.32
Consensus pattern (17 bp):
ATAATGAACATTAAAAT
Found at i:49295854 original size:13 final size:13
Alignment explanation
Indices: 49295836--49295877 Score: 63
Period size: 13 Copynumber: 3.5 Consensus size: 13
49295826 AGATTTTTCG
49295836 TAAATATTATCAC
1 TAAATATTATCAC
49295849 TAAATA--ATC-C
1 TAAATATTATCAC
49295859 TAAATATTATCAC
1 TAAATATTATCAC
49295872 TAAATA
1 TAAATA
49295878 AATCAAAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
10 7 0.27
11 3 0.12
12 3 0.12
13 13 0.50
ACGTcount: A:0.50, C:0.14, G:0.00, T:0.36
Consensus pattern (13 bp):
TAAATATTATCAC
Found at i:49295886 original size:23 final size:23
Alignment explanation
Indices: 49295837--49295886 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
49295827 GATTTTTCGT
*
49295837 AAATATTATCACTAAATAATCCT
1 AAATATTATCACTAAATAATCCA
49295860 AAATATTATCACTAAATAAAT-CA
1 AAATATTATCACTAAAT-AATCCA
49295883 AAAT
1 AAAT
49295887 TTAAAAATCA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 22 0.88
24 3 0.12
ACGTcount: A:0.54, C:0.14, G:0.00, T:0.32
Consensus pattern (23 bp):
AAATATTATCACTAAATAATCCA
Found at i:49299646 original size:13 final size:13
Alignment explanation
Indices: 49299628--49299660 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
49299618 AATTTTGATT
49299628 TATTTAGTGATAA
1 TATTTAGTGATAA
49299641 TATTTAGTGATAA
1 TATTTAGTGATAA
49299654 TATTTAG
1 TATTTAG
49299661 GGAAAATCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.48
Consensus pattern (13 bp):
TATTTAGTGATAA
Found at i:49304046 original size:23 final size:23
Alignment explanation
Indices: 49304016--49304067 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 23
49304006 ATTTCGATGC
* *
49304016 CTGTAATATCCCGAAAATTACTA
1 CTGTAATACCCCAAAAATTACTA
49304039 CTGTAATACCCCAAAAATTACTA
1 CTGTAATACCCCAAAAATTACTA
*
49304062 CAGTAA
1 CTGTAA
49304068 GAAAGTAGGT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.42, C:0.23, G:0.08, T:0.27
Consensus pattern (23 bp):
CTGTAATACCCCAAAAATTACTA
Found at i:49313164 original size:9 final size:8
Alignment explanation
Indices: 49313138--49313171 Score: 50
Period size: 8 Copynumber: 4.0 Consensus size: 8
49313128 ATATATATTT
49313138 AAATTAAA
1 AAATTAAA
49313146 AAATTAAA
1 AAATTAAA
49313154 AAATTAGAA
1 AAATTA-AA
49313163 AAATATAAA
1 AAAT-TAAA
49313172 CACATAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
8 14 0.58
9 8 0.33
10 2 0.08
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.24
Consensus pattern (8 bp):
AAATTAAA
Found at i:49321530 original size:15 final size:14
Alignment explanation
Indices: 49321512--49321541 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
49321502 AATGACTATT
49321512 ACATTAATAATGAAA
1 ACATTAATAAT-AAA
49321527 ACATTAATAATAAA
1 ACATTAATAATAAA
49321541 A
1 A
49321542 TAAGTATAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.63, C:0.07, G:0.03, T:0.27
Consensus pattern (14 bp):
ACATTAATAATAAA
Found at i:49325360 original size:39 final size:38
Alignment explanation
Indices: 49325313--49325427 Score: 106
Period size: 39 Copynumber: 3.0 Consensus size: 38
49325303 ATAAAGATGC
49325313 TTTAGAGTATTGTGGTATATGCTTGAATGTTATGTGAT
1 TTTAGAGTATTGTGGTATATGCTTGAATGTTATGTGAT
* * * * *
49325351 TTTACGAGTATTATGAG-ATATGCTTAAACGTCATGAGAT
1 TTTA-GAGTATTGTG-GTATATGCTTGAATGTTATGTGAT
* * * * *
49325390 TATATGAGTATGGTGATATATGCTTGTATGTTAAGTGA
1 TTTA-GAGTATTGTGGTATATGCTTGAATGTTATGTGA
49325428 CCTAAAACCT
Statistics
Matches: 58, Mismatches: 16, Indels: 5
0.73 0.20 0.06
Matches are distributed among these distances:
38 4 0.07
39 53 0.91
40 1 0.02
ACGTcount: A:0.29, C:0.05, G:0.24, T:0.42
Consensus pattern (38 bp):
TTTAGAGTATTGTGGTATATGCTTGAATGTTATGTGAT
Found at i:49332809 original size:54 final size:54
Alignment explanation
Indices: 49332746--49333425 Score: 289
Period size: 54 Copynumber: 12.6 Consensus size: 54
49332736 CTCATTTTCA
* * *
49332746 ATCAGAACCTTCAACTTACGAGATTTTACGAATCTTGGAGTTTGCTGATTTACG
1 ATCATAACCTTCTACTTACGAGATTTTACGAATCTTAGAGTTTGCTGATTTACG
* * * * ** *
49332800 ATCACAACCTTCTCCTTAC-AGGATTTTAC-AGATCTCACAGTTTGCCAATTTATG
1 ATCATAACCTTCTACTTACGA-GATTTTACGA-ATCTTAGAGTTTGCTGATTTACG
* * * * * * *
49332854 ATCACAACTTTCTACTTTA-GGGATTTTACAAATCTT-GCGATTCGTTGATTTACG
1 ATCATAACCTTCTAC-TTACGAGATTTTACGAATCTTAGAG-TTTGCTGATTTACG
* * * * * * * * *
49332908 ATCATGACCTTTTACTGACGGGACTTTACAAATC-TCGTAGTCTGCTGATTTATG
1 ATCATAACCTTCTACTTACGAGATTTTACGAATCTTAG-AGTTTGCTGATTTACG
*** * * * * * * *
49332962 AT--T-ACGACCTACTTACAAGATTTTATGACTCTCACGA-TCTACTTATTTACG
1 ATCATAACCTTCTACTTACGAGATTTTACGAATCTTA-GAGTTTGCTGATTTACG
* * * * * * *
49333013 ATGATAACCTTTTACTTATGGGATTTTACAAATCTCATG-GTCTGCTGATTTACG
1 ATCATAACCTTCTACTTACGAGATTTTACGAATCTTA-GAGTTTGCTGATTTACG
* * * * * * * * *
49333067 ATAATGACCTTTTACTTATGAAATTTTATGAATCTCACGA-TTAGCTAATTTACG
1 ATCATAACCTTCTACTTACGAGATTTTACGAATCTTA-GAGTTTGCTGATTTACG
* * *** *
49333121 ATCA-AGACCTTCTACTTATGAGATTTTACGAATCTTACAGTCCACTGATTTATG
1 ATCATA-ACCTTCTACTTACGAGATTTTACGAATCTTAGAGTTTGCTGATTTACG
* * * * *
49333175 ATCATGACCTTCTACTTACGGGATTTTACAAATCTCACAGTCCTT--TGATTTACG
1 ATCATAACCTTCTACTTACGAGATTTTACGAATCTTAGAGT--TTGCTGATTTACG
* * * * * * *
49333229 ATCATGATCTTCTACTTACGGGATTTTACGAATCTCACG-GTTCGTTGATTTATG
1 ATCATAACCTTCTACTTACGAGATTTTACGAATCTTA-GAGTTTGCTGATTTACG
* * * * * ** * * *
49333283 ATCATGACCTCCTACTTATGGGATTTTACGAATC-TAGCGATCCGTTAATTTAAG
1 ATCATAACCTTCTACTTACGAGATTTTACGAATCTTAGAG-TTTGCTGATTTACG
* * * * * * *
49333337 TTCATGACCTTCTACTTACGGGATTTTACGAATCTCACG-GTCCT-CTAATTTATG
1 ATCATAACCTTCTACTTACGAGATTTTACGAATCTTA-GAGT-TTGCTGATTTACG
* * *
49333391 TTCATAACCTTCTAATTACGTGATTTTACGAATCT
1 ATCATAACCTTCTACTTACGAGATTTTACGAATCT
49333426 AGGTGTGTTT
Statistics
Matches: 485, Mismatches: 112, Indels: 58
0.74 0.17 0.09
Matches are distributed among these distances:
51 30 0.06
52 4 0.01
53 11 0.02
54 431 0.89
55 8 0.02
56 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.14, T:0.38
Consensus pattern (54 bp):
ATCATAACCTTCTACTTACGAGATTTTACGAATCTTAGAGTTTGCTGATTTACG
Found at i:49332959 original size:108 final size:108
Alignment explanation
Indices: 49332638--49333425 Score: 517
Period size: 108 Copynumber: 7.3 Consensus size: 108
49332628 TTTAATTAAA
* * * * * * * *
49332638 ATCACGACTTTCTACTTACAGGATTTTATGAATCTCGCG-GTCCTCTGATTTAAGATCATGACAT
1 ATCACGACCTTCTACTTACGGGATTTTACGAATCTCACGATTCGT-TGATTTACGATCATGACCT
* * ** * * ** * *
49332702 TTTACATATAGGATTTTACGAATCTCATGAG-CCACTCATTT-TCA
65 TCTACTTACGGGATTTTACAAATCTCA-CAGTCTGCTGATTTAT-G
* * ** * * **
49332746 ATCA-GAACCTTCAACTTACGAGATTTTACGAATCT-TGGAGTTTGCTGATTTACGATCACAACC
1 ATCACG-ACCTTCTACTTACGGGATTTTACGAATCTCACGA-TTCGTTGATTTACGATCATGACC
* * * * **
49332809 TTCTCCTTACAGGATTTTACAGATCTCACAGTTTGCCAATTTATG
64 TTCTACTTACGGGATTTTACAAATCTCACAGTCTGCTGATTTATG
* * * **
49332854 ATCACAACTTTCTACTTTA-GGGATTTTACAAATCTTGCGATTCGTTGATTTACGATCATGACCT
1 ATCACGACCTTCTAC-TTACGGGATTTTACGAATCTCACGATTCGTTGATTTACGATCATGACCT
* * * **
49332918 TTTACTGACGGGACTTTACAAATCTCGTAGTCTGCTGATTTATG
65 TCTACTTACGGGATTTTACAAATCTCACAGTCTGCTGATTTATG
* ** * * * *
49332962 ATTACGA-C--CTACTTACAAGATTTTATGACTCTCACGATCTAC-TT-ATTTACGATGATAACC
1 ATCACGACCTTCTACTTACGGGATTTTACGAATCTCACGAT-T-CGTTGATTTACGATCATGACC
* * ** *
49333022 TTTTACTTATGGGATTTTACAAATCTCATGGTCTGCTGATTTACG
64 TTCTACTTACGGGATTTTACAAATCTCACAGTCTGCTGATTTATG
* * * * ** * * * * *
49333067 ATAATGACCTTTTACTTATGAAATTTTATGAATCTCACGATTAGCTAATTTACGATCAAGACCTT
1 ATCACGACCTTCTACTTACGGGATTTTACGAATCTCACGATTCGTTGATTTACGATCATGACCTT
* * * * **
49333132 CTACTTATGAGATTTTACGAATCTTACAGTCCACTGATTTATG
66 CTACTTACGGGATTTTACAAATCTCACAGTCTGCTGATTTATG
* * * * *
49333175 ATCATGACCTTCTACTTACGGGATTTTACAAATCTCAC-AGTCCTTTGATTTACGATCATGATCT
1 ATCACGACCTTCTACTTACGGGATTTTACGAATCTCACGA-TTCGTTGATTTACGATCATGACCT
* * *
49333239 TCTACTTACGGGATTTTACGAATCTCACGGT-TCGTTGATTTATG
65 TCTACTTACGGGATTTTACAAATCTCACAGTCT-GCTGATTTATG
* * * * * * *
49333283 ATCATGACCTCCTACTTATGGGATTTTACGAATCT-AGCGATCCGTTAATTTAAGTTCATGACCT
1 ATCACGACCTTCTACTTACGGGATTTTACGAATCTCA-CGATTCGTTGATTTACGATCATGACCT
* * *
49333347 TCTACTTACGGGATTTTACGAATCTCACGGTCCT-CTAATTTATG
65 TCTACTTACGGGATTTTACAAATCTCACAGT-CTGCTGATTTATG
* ** * *
49333391 TTCATAACCTTCTAATTACGTGATTTTACGAATCT
1 ATCACGACCTTCTACTTACGGGATTTTACGAATCT
49333426 AGGTGTGTTT
Statistics
Matches: 532, Mismatches: 126, Indels: 44
0.76 0.18 0.06
Matches are distributed among these distances:
104 3 0.01
105 77 0.14
106 4 0.01
107 9 0.02
108 430 0.81
109 8 0.02
110 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.38
Consensus pattern (108 bp):
ATCACGACCTTCTACTTACGGGATTTTACGAATCTCACGATTCGTTGATTTACGATCATGACCTT
CTACTTACGGGATTTTACAAATCTCACAGTCTGCTGATTTATG
Found at i:49333023 original size:105 final size:106
Alignment explanation
Indices: 49332901--49333124 Score: 274
Period size: 105 Copynumber: 2.1 Consensus size: 106
49332891 CGATTCGTTG
* * * *
49332901 ATTTACGATCATGACCTTTTACTGACGGGACTTTACAAATCTCGTAGTCTGCTGATTTATGATTA
1 ATTTACGATCATAACCTTTTACTGACGGGACTTTACAAATCTCATAGTCTGCTGATTTACGATAA
* *
49332966 CGACC-TACTTA-CAAGATTTTATGACTCTCACGATCTA-CTT
66 CGACCTTACTTATCAA-ATTTTATGAATCTCACGAT-TAGCTA
* * * * *
49333006 ATTTACGATGATAACCTTTTACTTATGGGATTTTACAAATCTCATGGTCTGCTGATTTACGATAA
1 ATTTACGATCATAACCTTTTACTGACGGGACTTTACAAATCTCATAGTCTGCTGATTTACGATAA
* *
49333071 TGACCTTTTACTTATGAAATTTTATGAATCTCACGATTAGCTA
66 CGACC--TTACTTATCAAATTTTATGAATCTCACGATTAGCTA
49333114 ATTTACGATCA
1 ATTTACGATCA
49333125 AGACCTTCTA
Statistics
Matches: 100, Mismatches: 14, Indels: 7
0.83 0.12 0.06
Matches are distributed among these distances:
105 60 0.60
107 2 0.02
108 36 0.36
109 2 0.02
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.39
Consensus pattern (106 bp):
ATTTACGATCATAACCTTTTACTGACGGGACTTTACAAATCTCATAGTCTGCTGATTTACGATAA
CGACCTTACTTATCAAATTTTATGAATCTCACGATTAGCTA
Found at i:49333227 original size:162 final size:163
Alignment explanation
Indices: 49332969--49333425 Score: 458
Period size: 162 Copynumber: 2.8 Consensus size: 163
49332959 ATGATTACGA
** * * * * * * * * *
49332969 CCTACTTACAAGATTTTATGACTCTCA-CGATCTACTTATTTACGATGATAACCTTTTACTTATG
1 CCTACTTATGAGATTTTACGAATCT-AGCGATCCACTAATTTAAGATCATGACCTTCTACTTACG
* * * *
49333033 GGATTTTACAAATCTCATGGT-CTGCTGATTTACGATAATGACCTTTTACTTATGAAATTTTATG
65 GGATTTTACAAATCTCACGGTCCTGCTGATTTACGATAATGACCTTCTACTTACGAAATTTTACG
49333097 AATCTCACGATTAGCTAATTTACGATCAAGACCT
130 AATCTCACGATTAGCTAATTTACGATCAAGACCT
* * *
49333131 TCTACTTATGAGATTTTACGAATCTTA-C-AGTCCACTGATTTATGATCATGACCTTCTACTTAC
1 CCTACTTATGAGATTTTACGAATC-TAGCGA-TCCACTAATTTAAGATCATGACCTTCTACTTAC
* * * * **
49333194 GGGATTTTACAAATCTCACAGTCCT-TTGATTTACGATCATGATCTTCTACTTACGGGATTTTAC
64 GGGATTTTACAAATCTCACGGTCCTGCTGATTTACGATAATGACCTTCTACTTACGAAATTTTAC
* * * * * *
49333258 GAATCTCACGGTTCGTTGATTTATGATCATGACCT
129 GAATCTCACGATTAGCTAATTTACGATCAAGACCT
* ** *
49333293 CCTACTTATGGGATTTTACGAATCTAGCGATCCGTTAATTTAAGTTCATGACCTTCTACTTACGG
1 CCTACTTATGAGATTTTACGAATCTAGCGATCCACTAATTTAAGATCATGACCTTCTACTTACGG
* * * * * * * **
49333358 GATTTTACGAATCTCACGGTCCT-CTAATTTATGTTCATAACCTTCTAATTACGTGATTTTACGA
66 GATTTTACAAATCTCACGGTCCTGCTGATTTACGATAATGACCTTCTACTTACGAAATTTTACGA
49333422 ATCT
131 ATCT
49333426 AGGTGTGTTT
Statistics
Matches: 245, Mismatches: 45, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
161 3 0.01
162 238 0.97
163 4 0.02
ACGTcount: A:0.27, C:0.20, G:0.14, T:0.39
Consensus pattern (163 bp):
CCTACTTATGAGATTTTACGAATCTAGCGATCCACTAATTTAAGATCATGACCTTCTACTTACGG
GATTTTACAAATCTCACGGTCCTGCTGATTTACGATAATGACCTTCTACTTACGAAATTTTACGA
ATCTCACGATTAGCTAATTTACGATCAAGACCT
Found at i:49334892 original size:507 final size:507
Alignment explanation
Indices: 49333982--49334902 Score: 1190
Period size: 507 Copynumber: 1.8 Consensus size: 507
49333972 AATTGCAATC
* * * *
49333982 ACGACCTTTTACTTACGTGATTTTACGAATCTAGGCGTGTTGAGGAAGAAATCAAAACTGACCTT
1 ACGACCTTCTACTTACGTGATTTTACGAATCTAGACGTGTTGAGGAAGAAATCAAAACTGACATC
* * * * * *
49334047 TCTGCCCTTCAGATCAAGTTAGATGCTAGCCATAATGAATATTGACGTGTTAAGGAAGAACTCAA
66 TCTACCCTTCAAAGCAAGTTAGAAGCTAGACATAATGAATATAGACGTGTTAAGGAAGAACTCAA
* * *
49334112 CACTAACCTTTAAAGAAAGAGGATAGAGAAATCTATTTTTTTACATTTCCTTTGTGAAGCTGAAG
131 AACTAACCTTTAAAGAAAGAGGATAGAGAAATCAATTTTTTTACATTGCCTTTGTGAAGCTGAAG
* * *
49334177 CTAGTTTTCTTAACCATACGTTTGAAATAAGGCTTAAAATGAATCGATCTACTCAGAAAACAAAG
196 CTAGTTCTCATAACCATACATTTGAAATAAGGCTTAAAATGAATCGATCTACTCAGAAAACAAAG
* *
49334242 AACTTTTTGAAAAGCTTTAGTTGATTTACAATCACGAGTTTTTACTTATGGGATTTTACAAATCT
261 AACTTTTTGAAAAGCTTTAGTTGATTTACAATCACAAATTTTTA-TTATGGGATTTTACAAATCT
* * * * * * ** *
49334307 CACAGTCTGTTAATTTATGATGACGACCTTTTACTTATAGGATTTCTCGATTCTCATGGTTCGCT
325 CACAGTCTGTTAATTTACGATGACAACCATTTACTTACAGGATTTCTAGAGTCTCACAGTTCACT
*
49334372 GATTTACGATCATGACTTTCTATTATGACTTTTTAAGAATCTCACAAACTGCTGATTTACTACCA
390 GATTTAAGATCATGACTTTCTATTATGACTTTTTAAGAATCTCACAAACTGCTGATTTACTACCA
49334437 CAAGCTTCTACTTACGGGTTTTTAAAAATCTCGCGGTCCACTAATTTACGATT
455 CAAGCTTCTACTTACGGGTTTTTAAAAATCTCGCGGTCCACTAATTTACGATT
* *
49334490 ACGACCTTCTACTTATGTGATTTTACGAATCTAGACGTGTTGAGGAAGAACTCAAAACTGACATC
1 ACGACCTTCTACTTACGTGATTTTACGAATCTAGACGTGTTGAGGAAGAAATCAAAACTGACATC
* * * * ** *
49334555 TCTACGCTTCAAAGCAAGTTAGAAGCTAGAGATGATTAATATAGGTGTGTTGAGGAAGAACTCAA
66 TCTACCCTTCAAAGCAAGTTAGAAGCTAGACATAATGAATATAGACGTGTTAAGGAAGAACTCAA
* * *
49334620 AACTAA-CTTTAAAGAAGGAGGATAGAGGAAA-CAATTTTTTTACATTGCCTTTGTGAGGCTGGA
131 AACTAACCTTTAAAGAAAGAGGATAGA-GAAATCAATTTTTTTACATTGCCTTTGTGAAGCTGAA
* * * * **
49334683 GGTAGTTCTCATCACCATACATTTGAAATGAGGCTTCAAATGGGTCGATCTACTCAGAAAAACAA
195 GCTAGTTCTCATAACCATACATTTGAAATAAGGCTTAAAATGAATCGATCTACTCAG-AAAACAA
* * * * * **
49334748 TGAACTTTCTT-AAAAGTTTTAGTTGATTTACAATTACAACATTTTT-TTTTTGGATTTTATGAA
259 AGAACTTT-TTGAAAAGCTTTAGTTGATTTACAATCACAA-ATTTTTATTATGGGATTTTACAAA
** * * *
49334811 TCTCATGGAT-TGTTGATTTACGATGATAATCATTTACTTACAGGATTT-TAAGAGTCTCACAG-
322 TCTCACAG-TCTGTTAATTTACGATGACAACCATTTACTTACAGGATTTCT-AGAGTCTCACAGT
*
49334873 TCTACTGATTTAAGATCATGATTTTCTATT
385 TC-ACTGATTTAAGATCATGACTTTCTATT
49334903 TACGGTGTAC
Statistics
Matches: 347, Mismatches: 59, Indels: 15
0.82 0.14 0.04
Matches are distributed among these distances:
506 3 0.01
507 177 0.51
508 160 0.46
509 7 0.02
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35
Consensus pattern (507 bp):
ACGACCTTCTACTTACGTGATTTTACGAATCTAGACGTGTTGAGGAAGAAATCAAAACTGACATC
TCTACCCTTCAAAGCAAGTTAGAAGCTAGACATAATGAATATAGACGTGTTAAGGAAGAACTCAA
AACTAACCTTTAAAGAAAGAGGATAGAGAAATCAATTTTTTTACATTGCCTTTGTGAAGCTGAAG
CTAGTTCTCATAACCATACATTTGAAATAAGGCTTAAAATGAATCGATCTACTCAGAAAACAAAG
AACTTTTTGAAAAGCTTTAGTTGATTTACAATCACAAATTTTTATTATGGGATTTTACAAATCTC
ACAGTCTGTTAATTTACGATGACAACCATTTACTTACAGGATTTCTAGAGTCTCACAGTTCACTG
ATTTAAGATCATGACTTTCTATTATGACTTTTTAAGAATCTCACAAACTGCTGATTTACTACCAC
AAGCTTCTACTTACGGGTTTTTAAAAATCTCGCGGTCCACTAATTTACGATT
Found at i:49335101 original size:13 final size:13
Alignment explanation
Indices: 49335083--49335108 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
49335073 GAAACAAAGA
49335083 AACCCTAGCCTCT
1 AACCCTAGCCTCT
49335096 AACCCTAGCCTCT
1 AACCCTAGCCTCT
49335109 GTCGCCGCCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.46, G:0.08, T:0.23
Consensus pattern (13 bp):
AACCCTAGCCTCT
Found at i:49336048 original size:3 final size:3
Alignment explanation
Indices: 49336040--49336140 Score: 78
Period size: 3 Copynumber: 32.7 Consensus size: 3
49336030 TGTAATCCTT
*** *
49336040 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA AGC TTA TTA TGA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * **
49336088 TTT TTA TTC TTG TTA TTGCA TTTA TTA TTA TTA CTT- TCC TTA TTA TTA
1 TTA TTA TTA TTA TTA TT--A -TTA TTA TTA TTA -TTA TTA TTA TTA TTA
49336136 TTA TT
1 TTA TT
49336141 TACCCACTTA
Statistics
Matches: 77, Mismatches: 16, Indels: 10
0.75 0.16 0.10
Matches are distributed among these distances:
2 1 0.01
3 70 0.91
4 3 0.04
5 1 0.01
6 2 0.03
ACGTcount: A:0.27, C:0.06, G:0.04, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:49336399 original size:25 final size:27
Alignment explanation
Indices: 49336344--49336408 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 27
49336334 TTTAAGGCTT
*
49336344 TATACTTTATATATATACATAGATATGCA
1 TATA-TTT-TATATATACATACATATGCA
* *
49336373 TATTTTTTATATGTACATACAT-T-CA
1 TATATTTTATATATACATACATATGCA
49336398 TATATTTTATA
1 TATATTTTATA
49336409 ATTTATAATT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
25 12 0.38
26 1 0.03
27 13 0.41
28 3 0.09
29 3 0.09
ACGTcount: A:0.37, C:0.09, G:0.05, T:0.49
Consensus pattern (27 bp):
TATATTTTATATATACATACATATGCA
Found at i:49337041 original size:108 final size:106
Alignment explanation
Indices: 49336897--49337096 Score: 310
Period size: 107 Copynumber: 1.9 Consensus size: 106
49336887 TAACAAAGGT
* * *
49336897 AAATATTTTGCTTTTGGAAATTCGAGAAAACGTGCCCTAATGTGTTGGGTTTCGATTTTTTCATT
1 AAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGA-TTTCTCATT
*
49336962 TGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAATAAGA
65 TGACCAAATAGCCAAATATCCTCTTAAAATTTCAAAATAAGA
* *
49337004 AAATGTTTTGCGTTTGAGAAATTCGAGAAAATGTGCCCTAATGTGCTGGGTTTCGATTTCTCATT
1 AAATATTTTGCGTTTG-GAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTCTCATT
* *
49337069 TGACCAAATAGTCAAATATTCTCTTAAA
65 TGACCAAATAGCCAAATATCCTCTTAAA
49337097 TCTTAATCCA
Statistics
Matches: 84, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
107 47 0.56
108 37 0.44
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (106 bp):
AAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTCTCATTT
GACCAAATAGCCAAATATCCTCTTAAAATTTCAAAATAAGA
Found at i:49340798 original size:15 final size:16
Alignment explanation
Indices: 49340778--49340811 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
49340768 TCAAAGTCAA
49340778 AAAT-AAGAGAAAAAG
1 AAATAAAGAGAAAAAG
*
49340793 AAATAAATAGAAAAAG
1 AAATAAAGAGAAAAAG
49340809 AAA
1 AAA
49340812 AGAAAAAGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.76, C:0.00, G:0.15, T:0.09
Consensus pattern (16 bp):
AAATAAAGAGAAAAAG
Found at i:49341673 original size:7 final size:7
Alignment explanation
Indices: 49341656--49341689 Score: 61
Period size: 7 Copynumber: 5.0 Consensus size: 7
49341646 TGAGTCCCAA
49341656 AAAAATG
1 AAAAATG
49341663 -AAAATG
1 AAAAATG
49341669 AAAAATG
1 AAAAATG
49341676 AAAAATG
1 AAAAATG
49341683 AAAAATG
1 AAAAATG
49341690 GAGAGGCTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 6 0.23
7 20 0.77
ACGTcount: A:0.71, C:0.00, G:0.15, T:0.15
Consensus pattern (7 bp):
AAAAATG
Found at i:49343069 original size:88 final size:88
Alignment explanation
Indices: 49342920--49343424 Score: 769
Period size: 88 Copynumber: 5.7 Consensus size: 88
49342910 AACAGATCAA
* *
49342920 TGAAGACAACAAATCTTGCCTTCCTGCATTGACAGCGAAGTAGATCGAAGACACAAACCTTGCCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
49342985 CTCTCAGTTGTAGCGGAGCTGGT
66 CTCTCAGTTGTAGCGGAGCTGGT
* * *
49343008 TGAAGACAACATATCTTGCCTTCCTGCATTGACAGTGAAGCAGATCGAAGACAAAAACCTTGCCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
* * *
49343073 CTCTCGGTTGTCGCGGAGCTAGT
66 CTCTCAGTTGTAGCGGAGCTGGT
* *
49343096 TGAAGACAATAGATCTTGCCTTCCTACATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
*
49343161 CTCTCGGTTGTAGCGGAGCTGGT
66 CTCTCAGTTGTAGCGGAGCTGGT
*
49343184 TGAAGACAACAGATCTTACCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
*
49343249 CTCTCAGTTGTAGTGGAGCTGGT
66 CTCTCAGTTGTAGCGGAGCTGGT
* * * *
49343272 TGATGACAACAGATCTTGCCTTCCTGAATCGACAACGAAGC-GAATCGAAGACACAAACCTTGCC
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAG-ATCGAAGACACAAACCTTGCC
* *
49343336 TCTCTCAGTTATAGTGGAGCTGGT
65 TCTCTCAGTTGTAGCGGAGCTGGT
* * * * * *
49343360 TGATGACAACAGATCTTGCCTTCCTGAATCGACAGTGAAGCGGATCGAAGACACAAGCCTTGCCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
49343425 TCCTGCATTG
Statistics
Matches: 387, Mismatches: 28, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
87 1 0.00
88 385 0.99
89 1 0.00
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.24
Consensus pattern (88 bp):
TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
CTCTCAGTTGTAGCGGAGCTGGT
Found at i:49343437 original size:220 final size:220
Alignment explanation
Indices: 49343202--49343644 Score: 674
Period size: 220 Copynumber: 2.0 Consensus size: 220
49343192 ACAGATCTTA
*
49343202 CCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCAGTTGTAGTGGAG
1 CCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCAGTTGTAGCGGAG
*
49343267 CTGGTTGATGACAACAGATCTTGCCTTCCTGA-ATCGACAACGAAGC-GAATCGAAGACACAAAC
66 CTGGTTGAAGACAACAGATCTTGCCTTCCT-ACATCGACAACGAAGCAG-ATCGAAGACACAAAC
** *
49343330 CTTGCCTCTCTCAGTTATAGTGGAGCTGGTTGATGACAACAGATCTTGCCTTCCTGAATCGACAG
129 CTTGCCTCTCTCAGTTATAGCAGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGAATCGACAG
** * *
49343395 TGAAGCGGATCGAAGACACAAGCCTTG
194 CAAAGCAGATCGAAGACACAAACCTTG
* *
49343422 CCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACTTTGCCTCTCTCGGTTGTAGCGGAG
1 CCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCAGTTGTAGCGGAG
* *
49343487 CTGGTTGAAGACAACAGATCTTGCCTTCCTACATTGACAGCGAAGCAGATCGAAGACACAAACCT
66 CTGGTTGAAGACAACAGATCTTGCCTTCCTACATCGACAACGAAGCAGATCGAAGACACAAACCT
* * * * *
49343552 TGTCTCTCTCGGTTGTAGCAGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCA
131 TGCCTCTCTCAGTTATAGCAGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGAATCGACAGCA
* *
49343617 AAGCATATCGAAGACACAAACTTTG
196 AAGCAGATCGAAGACACAAACCTTG
49343642 CCT
1 CCT
49343645 CTCTCGGTTG
Statistics
Matches: 201, Mismatches: 20, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
219 1 0.00
220 199 0.99
221 1 0.00
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (220 bp):
CCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCAGTTGTAGCGGAG
CTGGTTGAAGACAACAGATCTTGCCTTCCTACATCGACAACGAAGCAGATCGAAGACACAAACCT
TGCCTCTCTCAGTTATAGCAGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGAATCGACAGCA
AAGCAGATCGAAGACACAAACCTTG
Found at i:49343453 original size:132 final size:132
Alignment explanation
Indices: 49343022--49343801 Score: 517
Period size: 132 Copynumber: 5.9 Consensus size: 132
49343012 GACAACATAT
* * * * *
49343022 CTTGCCTTCCTGCATTGACAGTGAAGCAGATCGAAGACAAAAACCTTGCCTCTCTCGGTTGTCGC
1 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCAGTTATAGC
* *
49343087 GGAGCTAGTTGAAGACAATAGATCTTGCCTTCCTACATTGACAGCGAAGCAGATCGAAGACACAA
66 GGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTACATTGACAGCGAAGCAGATCGAAGACACAA
49343152 AC
131 AC
* * * * * * * * *
49343154 CTTGCC-TCTCT-CGGTTG-TAGCGGAGCTGGTTGAAGACAACAGATCTTACCT-TCCTGCA-TT
1 CTTGCCTTC-CTGC-ATTGACAGCGAAGCAGATCGAAGAC-ACAAACCTTGCCTCT-CT-CAGTT
* * * * * * * * * * * * *
49343214 GACAGCGAAGCAGATCGAAGAC-ACAAACCTTGCC-TCTCT-CAGTTG-TAGTGGAGCTGGTTGA
61 -ATAGCGGAGCTGGTTGAAGACAACAGATCTTGCCTTC-CTACA-TTGACAGCGAAGCAGATCGA
* * *
49343275 TGACAACAGAT
123 AGAC-ACAAAC
* * *
49343286 CTTGCCTTCCTGAATCGACAACGAAGC-GAATCGAAGACACAAACCTTGCCTCTCTCAGTTATAG
1 CTTGCCTTCCTGCATTGACAGCGAAGCAG-ATCGAAGACACAAACCTTGCCTCTCTCAGTTATAG
* * * * *
49343350 TGGAGCTGGTTGATGACAACAGATCTTGCCTTCCTGA-ATCGACAGTGAAGCGGATCGAAGACAC
65 CGGAGCTGGTTGAAGACAACAGATCTTGCCTTCCT-ACATTGACAGCGAAGCAGATCGAAGACAC
*
49343414 AAGC
129 AAAC
* * *
49343418 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACTTTGCCTCTCTCGGTTGTAGC
1 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCAGTTATAGC
49343483 GGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTACATTGACAGCGAAGCAGATCGAAGACACAA
66 GGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTACATTGACAGCGAAGCAGATCGAAGACACAA
49343548 AC
131 AC
* * * * * * * *
49343550 CTTGTC-TCTCT-CGGTTG-TAGC-AGAGCTGGTTGAAGACAACAGATCTTGCCT-TCCTGCA-T
1 CTTGCCTTC-CTGC-ATTGACAGCGA-AGCAGATCGAAGAC-ACAAACCTTGCCTCT-CT-CAGT
* ** * * * * * * * *
49343609 TGACAGCAAAGCAT-ATCGAAGAC-ACA-AACTTTGCC-TCTCT-CGGTTG-TAGCGGAGCTGGT
60 T-ATAGCGGAGC-TGGTTGAAGACAACAGATC-TTGCCTTC-CTAC-ATTGACAGCGAAGCAGAT
* * *
49343668 TGAAGACAACAGAT
120 CGAAGAC-ACAAAC
* * * * *
49343682 CTTGCCTTCTTGCATTAACAGCGAAGCAGATCGAAGACATAAACCTTGCCTCTCTCGGTTGTAGC
1 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCAGTTATAGC
* * * *
49343747 GGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGCATTAACGGTGAAGCAGATC
66 GGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTACATTGACAGCGAAGCAGATC
49343802 AAAGTTACAA
Statistics
Matches: 475, Mismatches: 127, Indels: 91
0.69 0.18 0.13
Matches are distributed among these distances:
130 2 0.00
131 104 0.22
132 275 0.58
133 92 0.19
134 2 0.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.24
Consensus pattern (132 bp):
CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCAGTTATAGC
GGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTACATTGACAGCGAAGCAGATCGAAGACACAA
AC
Found at i:49343467 original size:88 final size:90
Alignment explanation
Indices: 49343375--49343801 Score: 396
Period size: 88 Copynumber: 4.9 Consensus size: 90
49343365 ACAACAGATC
*
49343375 TTGCCTTC-CT-GAATCGACAGTGAAGC-GGATCGAAGAC-ACA-AGCCTTGCCTTCCTGCATTG
1 TTGCCTTCTCTCG-ATCGACAGCGAAGCTGG-TCGAAGACAACAGA-CCTTGCCTTCCTGCATTG
49343435 ACAGCGAAGCAGATCGAAGACACAAACT
63 ACAGCGAAGCAGATCGAAGACACAAACT
* * * * * * *
49343463 TTGCC-TCTCTCGGTTG-TAGCGGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTACATTGACA
1 TTGCCTTCTCTCGATCGACAGCGAAGCTGGTCGAAGACAACAGACCTTGCCTTCCTGCATTGACA
*
49343526 GCGAAGCAGATCGAAGACACAAACC
66 GCGAAGCAGATCGAAGACACAAACT
* * * * * *
49343551 TTGTC-TCTCTCGGTTG-TAGC-AGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGCATTGAC
1 TTGCCTTCTCTCGATCGACAGCGA-AGCTGGTCGAAGACAACAGACCTTGCCTTCCTGCATTGAC
* *
49343613 AGCAAAGCATATCGAAGACACAAACT
65 AGCGAAGCAGATCGAAGACACAAACT
* * * * * * * *
49343639 TTGCC-TCTCTCGGTTG-TAGCGGAGCTGGTTGAAGACAACAGATCTTGCCTTCTTGCATTAACA
1 TTGCCTTCTCTCGATCGACAGCGAAGCTGGTCGAAGACAACAGACCTTGCCTTCCTGCATTGACA
* *
49343702 GCGAAGCAGATCGAAGACATAAACC
66 GCGAAGCAGATCGAAGACACAAACT
* * * * * * * *
49343727 TTGCC-TCTCTCGGTTG-TAGCGGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGCATTAACG
1 TTGCCTTCTCTCGATCGACAGCGAAGCTGGTCGAAGACAACAGACCTTGCCTTCCTGCATTGACA
*
49343790 GTGAAGCAGATC
66 GCGAAGCAGATC
49343802 AAAGTTACAA
Statistics
Matches: 306, Mismatches: 26, Indels: 14
0.88 0.08 0.04
Matches are distributed among these distances:
87 15 0.05
88 289 0.94
89 2 0.01
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.24
Consensus pattern (90 bp):
TTGCCTTCTCTCGATCGACAGCGAAGCTGGTCGAAGACAACAGACCTTGCCTTCCTGCATTGACA
GCGAAGCAGATCGAAGACACAAACT
Found at i:49343492 original size:308 final size:308
Alignment explanation
Indices: 49343110--49343732 Score: 996
Period size: 308 Copynumber: 2.0 Consensus size: 308
49343100 GACAATAGAT
49343110 CTTGCCTTCCTACATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGC
1 CTTGCCTTCCTACATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGC
*
49343175 GGAGCTGGTTGAAGACAACAGATCTTACCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAA
66 GGAGCTGGTTGAAGACAACAGATCTTACCTTCCTACATTGACAGCGAAGCAGATCGAAGACACAA
** *
49343240 ACCTTGCCTCTCTCAGTTGTAGTGGAGCTGGTTGATGACAACAGATCTTGCCTTCCTGAATCGAC
131 ACCTTGCCTCTCTCAGTTGTAGCAGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGAATCGAC
* * *
49343305 AACGAAGCGA-ATCGAAGACACAAACCTTGCCTCTCTCAGTTATAGTGGAGCTGGTTGATGACAA
196 AACAAAGC-ATATCGAAGACACAAACCTTGCCTCTCTCAGTTATAGCGGAGCTGGTTGAAGACAA
* * * *
49343369 CAGATCTTGCCTTCCTGAATCGACAGTGAAGCGGATCGAAGACACAAGC
260 CAGATCTTGCCTTCCTGAATCAACAGCGAAGCAGATCGAAGACACAAAC
* *
49343418 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACTTTGCCTCTCTCGGTTGTAGC
1 CTTGCCTTCCTACATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGC
*
49343483 GGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTACATTGACAGCGAAGCAGATCGAAGACACAA
66 GGAGCTGGTTGAAGACAACAGATCTTACCTTCCTACATTGACAGCGAAGCAGATCGAAGACACAA
* * * *
49343548 ACCTTGTCTCTCTCGGTTGTAGCAGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGCATTGAC
131 ACCTTGCCTCTCTCAGTTGTAGCAGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGAATCGAC
* * * *
49343613 AGCAAAGCATATCGAAGACACAAACTTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGACAAC
196 AACAAAGCATATCGAAGACACAAACCTTGCCTCTCTCAGTTATAGCGGAGCTGGTTGAAGACAAC
* * * *
49343678 AGATCTTGCCTTCTTGCATTAACAGCGAAGCAGATCGAAGACATAAAC
261 AGATCTTGCCTTCCTGAATCAACAGCGAAGCAGATCGAAGACACAAAC
49343726 CTTGCCT
1 CTTGCCT
49343733 CTCTCGGTTG
Statistics
Matches: 288, Mismatches: 26, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
307 1 0.00
308 287 1.00
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.24
Consensus pattern (308 bp):
CTTGCCTTCCTACATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGC
GGAGCTGGTTGAAGACAACAGATCTTACCTTCCTACATTGACAGCGAAGCAGATCGAAGACACAA
ACCTTGCCTCTCTCAGTTGTAGCAGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGAATCGAC
AACAAAGCATATCGAAGACACAAACCTTGCCTCTCTCAGTTATAGCGGAGCTGGTTGAAGACAAC
AGATCTTGCCTTCCTGAATCAACAGCGAAGCAGATCGAAGACACAAAC
Found at i:49343666 original size:396 final size:396
Alignment explanation
Indices: 49343022--49343781 Score: 1279
Period size: 396 Copynumber: 1.9 Consensus size: 396
49343012 GACAACATAT
* *
49343022 CTTGCCTTCCTGCATTGACAGTGAAGCAGATCGAAGACAAAAACCTTGCCTCTCTCGGTTGTCGC
1 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAAAACCTTGCCTCTCTCGGTTGTAGC
*
49343087 GGAGCTAGTTGAAGACAATAGATCTTGCCTTCCTACATTGACAGCGAAGCAGATCGAAGACACAA
66 GGAGCTAGTTGAAGACAACAGATCTTGCCTTCCTACATTGACAGCGAAGCAGATCGAAGACACAA
*
49343152 ACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGACAACAGATCTTACCTTCCTGCATTGAC
131 ACCTTGCCTCTCTCGGTTGTAGCAGAGCTGGTTGAAGACAACAGATCTTACCTTCCTGCATTGAC
* * *
49343217 AGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCAGTTGTAGTGGAGCTGGTTGATGACAAC
196 AGCAAAGCAGATCGAAGACACAAACCTTGCCTCTCTCAGTTGTAGCGGAGCTGGTTGAAGACAAC
*
49343282 AGATCTTGCCTTCCTGAATCGACAACGAAGC-GAATCGAAGACACAAACCTTGCCTCTCTCAGTT
261 AGATCTTGCCTTCCTGAATCAACAACGAAGCAG-ATCGAAGACACAAACCTTGCCTCTCTCAGTT
* *
49343346 ATAGTGGAGCTGGTTGATGACAACAGATCTTGCCTTCCTGAATCGACAGTGAAGCGGATCGAAGA
325 ATAGCGGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGAATCGACAGTGAAGCGGATCGAAGA
49343411 CACAAGC
390 CACAAGC
* *
49343418 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACTTTGCCTCTCTCGGTTGTAGC
1 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAAAACCTTGCCTCTCTCGGTTGTAGC
*
49343483 GGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTACATTGACAGCGAAGCAGATCGAAGACACAA
66 GGAGCTAGTTGAAGACAACAGATCTTGCCTTCCTACATTGACAGCGAAGCAGATCGAAGACACAA
* *
49343548 ACCTTGTCTCTCTCGGTTGTAGCAGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGCATTGAC
131 ACCTTGCCTCTCTCGGTTGTAGCAGAGCTGGTTGAAGACAACAGATCTTACCTTCCTGCATTGAC
* * *
49343613 AGCAAAGCATATCGAAGACACAAACTTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGACAAC
196 AGCAAAGCAGATCGAAGACACAAACCTTGCCTCTCTCAGTTGTAGCGGAGCTGGTTGAAGACAAC
* * * * * * *
49343678 AGATCTTGCCTTCTTGCATTAACAGCGAAGCAGATCGAAGACATAAACCTTGCCTCTCTCGGTTG
261 AGATCTTGCCTTCCTGAATCAACAACGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCAGTTA
49343743 TAGCGGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTG
326 TAGCGGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTG
49343782 CATTAACGGT
Statistics
Matches: 338, Mismatches: 25, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
396 337 1.00
397 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.24
Consensus pattern (396 bp):
CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAAAACCTTGCCTCTCTCGGTTGTAGC
GGAGCTAGTTGAAGACAACAGATCTTGCCTTCCTACATTGACAGCGAAGCAGATCGAAGACACAA
ACCTTGCCTCTCTCGGTTGTAGCAGAGCTGGTTGAAGACAACAGATCTTACCTTCCTGCATTGAC
AGCAAAGCAGATCGAAGACACAAACCTTGCCTCTCTCAGTTGTAGCGGAGCTGGTTGAAGACAAC
AGATCTTGCCTTCCTGAATCAACAACGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCAGTTA
TAGCGGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGAATCGACAGTGAAGCGGATCGAAGAC
ACAAGC
Found at i:49343845 original size:88 final size:87
Alignment explanation
Indices: 49343418--49343801 Score: 606
Period size: 88 Copynumber: 4.4 Consensus size: 87
49343408 AGACACAAGC
* *
49343418 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACTTTGCCTCTCTCGGTTGTAGC
1 CTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAGACACAAACCTT-CCTCTCTCGGTTGTAGC
49343483 GGAGCTGGTTGAAGACAACAGAT
65 GGAGCTGGTTGAAGACAACAGAT
* * *
49343506 CTTGCCTTCCTACATTGACAGCGAAGCAGATCGAAGACACAAACCTTGTCTCTCTCGGTTGTAGC
1 CTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAGACACAAACCTT-CCTCTCTCGGTTGTAGC
*
49343571 AGAGCTGGTTGAAGACAACAGAT
65 GGAGCTGGTTGAAGACAACAGAT
* * * *
49343594 CTTGCCTTCCTGCATTGACAGCAAAGCATATCGAAGACACAAACTTTGCCTCTCTCGGTTGTAGC
1 CTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAGACACAAACCTT-CCTCTCTCGGTTGTAGC
49343659 GGAGCTGGTTGAAGACAACAGAT
65 GGAGCTGGTTGAAGACAACAGAT
* *
49343682 CTTGCCTTCTTGCATTAACAGCGAAGCAGATCGAAGACATAAACCTTGCCTCTCTCGGTTGTAGC
1 CTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAGACACAAACCTT-CCTCTCTCGGTTGTAGC
49343747 GGAGCTGGTTGAAGACAACAGAT
65 GGAGCTGGTTGAAGACAACAGAT
* *
49343770 CTTGCCTTCCTGCATTAACGGTGAAGCAGATC
1 CTTGCCTTCCTGCATTAACAGCGAAGCAGATC
49343802 AAAGTTACAA
Statistics
Matches: 277, Mismatches: 19, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
88 277 1.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (87 bp):
CTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAGACACAAACCTTCCTCTCTCGGTTGTAGCG
GAGCTGGTTGAAGACAACAGAT
Found at i:49343979 original size:128 final size:128
Alignment explanation
Indices: 49343808--49344209 Score: 599
Period size: 128 Copynumber: 3.1 Consensus size: 128
49343798 GATCAAAGTT
* * *
49343808 ACAAATCCTATCTCCTTGGTCAGTAGTGGAGTAGGTTGGAAATTACAGATCTTGTCTCCTTAAGC
1 ACAAATCCTATCTCCCTGGTCAGCAGTGGAGTAGGTTGGAAATTACAGATCTTGTCTCCCTAAGC
* *
49343873 AGTAGCGGAGCAGATCGAAGATGGCAAATATTATCTTCAAGAGTAAGGAAGTAGATTTAAGCC
66 AGTAGCGGAGCAGATCGAAGACGGCAAATCTTATCTTCAAGAGTAAGGAAGTAGATTTAAGCC
* *
49343936 ACAAATCCTATCTCCCTGGTCAGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGC
1 ACAAATCCTATCTCCCTGGTCAGCAGTGGAGTAGGTTGGAAATTACAGATCTTGTCTCCCTAAGC
* * * *
49344001 AGTAACGGAACATATCGAAGACGGCAAATCTTATCTTCAAGAGTAATGAAGTAGATTTAAGCC
66 AGTAGCGGAGCAGATCGAAGACGGCAAATCTTATCTTCAAGAGTAAGGAAGTAGATTTAAGCC
* * * *
49344064 ACAAGTGCTATTTCCCTGGTCAGCAGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAGC
1 ACAAATCCTATCTCCCTGGTCAGCAGTGGAGTAGGTTGGAAATTACAGATCTTGTCTCCCTAAGC
* * ** *
49344129 AGTAGCAGAGCAGATC-AATGACGACAAATCTTATCTTCAAGAGTAAGGAAACATATTTAAGCC
66 AGTAGCGGAGCAGATCGAA-GACGGCAAATCTTATCTTCAAGAGTAAGGAAGTAGATTTAAGCC
*
49344192 ACAAATCCTATTTCCCTG
1 ACAAATCCTATCTCCCTG
49344210 AAGTTGTAGT
Statistics
Matches: 245, Mismatches: 28, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
127 2 0.01
128 243 0.99
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (128 bp):
ACAAATCCTATCTCCCTGGTCAGCAGTGGAGTAGGTTGGAAATTACAGATCTTGTCTCCCTAAGC
AGTAGCGGAGCAGATCGAAGACGGCAAATCTTATCTTCAAGAGTAAGGAAGTAGATTTAAGCC
Found at i:49344384 original size:113 final size:113
Alignment explanation
Indices: 49344236--49344447 Score: 343
Period size: 113 Copynumber: 1.9 Consensus size: 113
49344226 AGTTGAAGCT
* * * * *
49344236 ACAAGTCTTATCTCACTGAGGTTGCAGTGTAGCAGACTAAAGATAGTAAATGTTTTCTCGAAGAG
1 ACAAGTCTTATCTCACTAAAGTTGCAGTATAGCAGACTAAAGATAGCAAATGTTTCCTCGAAGAG
* *
49344301 CCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATTACACCATA
66 CCACAGATCTTATCTCTCTGAAGTTCCAATAGAGTGGATTACACCATA
*
49344349 ACAAGTCTTATCTCACTAAAGTTGTAGTATAGCAGACTAAAGATAGCAAATGTTTCCTCGAAGAG
1 ACAAGTCTTATCTCACTAAAGTTGCAGTATAGCAGACTAAAGATAGCAAATGTTTCCTCGAAGAG
*
49344414 CCACAGATCTTATCTTTCTGAAGTTCCAATAGAG
66 CCACAGATCTTATCTCTCTGAAGTTCCAATAGAG
49344448 CAGACTGAAG
Statistics
Matches: 90, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
113 90 1.00
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (113 bp):
ACAAGTCTTATCTCACTAAAGTTGCAGTATAGCAGACTAAAGATAGCAAATGTTTCCTCGAAGAG
CCACAGATCTTATCTCTCTGAAGTTCCAATAGAGTGGATTACACCATA
Found at i:49345962 original size:3 final size:3
Alignment explanation
Indices: 49345954--49346057 Score: 84
Period size: 3 Copynumber: 33.7 Consensus size: 3
49345944 TCTAATCCTT
***
49345954 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA AGC TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * **
49346002 TGA TTT TTA TTC TTG TTA TTGCA TTTA TTA TTA TTA CTT- TCC TTA TTA
1 TTA TTA TTA TTA TTA TTA TT--A -TTA TTA TTA TTA -TTA TTA TTA TTA
49346050 TTA TTA TT
1 TTA TTA TT
49346058 TACCCACTTA
Statistics
Matches: 80, Mismatches: 16, Indels: 10
0.75 0.15 0.09
Matches are distributed among these distances:
2 1 0.01
3 73 0.91
4 3 0.04
5 1 0.01
6 2 0.03
ACGTcount: A:0.27, C:0.06, G:0.04, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:49346312 original size:25 final size:27
Alignment explanation
Indices: 49346261--49346321 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
49346251 AGGCTTTATA
*
49346261 ATTTATATATATACATAGATATGCATAT
1 ATTT-TATATATACATACATATGCATAT
* *
49346289 TTTTTATATGTACATACAT-T-CATAT
1 ATTTTATATATACATACATATGCATAT
49346314 ATTTTATA
1 ATTTTATA
49346322 ATTTATAATT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
25 12 0.41
26 1 0.03
27 13 0.45
28 3 0.10
ACGTcount: A:0.38, C:0.08, G:0.05, T:0.49
Consensus pattern (27 bp):
ATTTTATATATACATACATATGCATAT
Found at i:49347801 original size:54 final size:54
Alignment explanation
Indices: 49347743--49347909 Score: 153
Period size: 54 Copynumber: 3.1 Consensus size: 54
49347733 ACAACCTTTT
*
49347743 ACTTATGGGACTTTACGAATCTCATGGTCT-ATCGATTT-TCGATGACGACCTTCA
1 ACTTATGGGACTTTACGAATCTCATGGTCTGAT-GATTTAT-GATAACGACCTTCA
* * * * **
49347797 ACTTACGAGACTTTACGAATCTCGTGGTCTGATGATTTATGATAATGACCTTTT
1 ACTTATGGGACTTTACGAATCTCATGGTCTGATGATTTATGATAACGACCTTCA
* * * * * *
49347851 ACTTATGGGATTTTACGAATGC-CACGGT-TCATTGATTTGTGATCACGACCTTCT
1 ACTTATGGGACTTTACGAAT-CTCATGGTCTGA-TGATTTATGATAACGACCTTCA
49347905 ACTTA
1 ACTTA
49347910 CGTGATTTTA
Statistics
Matches: 92, Mismatches: 17, Indels: 8
0.79 0.15 0.07
Matches are distributed among these distances:
53 2 0.02
54 86 0.93
55 4 0.04
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.37
Consensus pattern (54 bp):
ACTTATGGGACTTTACGAATCTCATGGTCTGATGATTTATGATAACGACCTTCA
Found at i:49348350 original size:452 final size:447
Alignment explanation
Indices: 49347438--49348354 Score: 1107
Period size: 452 Copynumber: 2.0 Consensus size: 447
49347428 TAGTCTAATA
* * *
49347438 ATTTACGATCACGACCTTCCAGTTATGTGATTTTACGAATCTAGGTGTGTTGAGGAATAACTCAA
1 ATTTACGATCACGACCTTCCACTTACGTGATTTTACAAATCTAGGTGTGTTGAGGAATAACTCAA
* * * *
49347503 AACTGACCTTTTTGCCTTTCAGAGCAAGTTAGATGCTAGAGATGATGAATATAAGCGTGTTGAGG
66 AACTGACCTCTTTGCCCTTCAGAGCAAGTTAAATGCTAGAAATGATGAATATAAGCGTGTTGAGG
*
49347568 AAGAACTGACATTAAAAGGAGAATAAAGGAATCAATTTTGTTATATTGCCTTAGGAAGGCTGAAG
131 AAGAACTAACATTAAAAGGAGAATAAAGGAATCAATTTTGTTATATTGCCTTAGGAAGGCTGAAG
* * * **
49347633 TTAGTTCTATTCACCATGTGTCTGAAATGAGGCTTGAAATAGATCGATTTCCTCACAAAAAACAA
196 CTAGTTCTATTCACCATATGTATGAAATGAGGCTTGAAATAGATCGAGCTCCTCACAAAAAACAA
* * * *
49347698 GGAACTTTTTGAAAAACTTTAGTTGATTTACAATCACAACCTTTTACTTATGGGACTTTACGAAT
261 GGAACTTTCTGAAAAAATTTAGTTGATTTACAATCACAACCTTTTACTTATGAGACTTTACAAAT
* * * * ** * * * *
49347763 CTCATGGTCTATCGATTTTCGATGACGACCTTCAACTTACGAGACTTTACGAATCTCGTGGTCTG
326 CTCACGGTCGATCAATTTTCAACAACAACATTCAACTTACGAGACTTTACAAATCTCGTAGTCTG
* * * * *
49347828 ATGATTTATGATAATGACCTTTTACTTATGGGATTTTACGAATGCCACGGTTCATTG
391 ATGATTTACGATAATCACCTTTTACTTATAGGATTTTACGAATGCCACGGTACACTG
** *
49347885 ATTTGTGATCACGACCTTCTACTTACGTGATTTTACAAATCTAGGTGTGTTGAGGAATAACTCAA
1 ATTTACGATCACGACCTTCCACTTACGTGATTTTACAAATCTAGGTGTGTTGAGGAATAACTCAA
*
49347950 AATTGACCTCTTTGCCCTTCAGAGCAA-TTGAAATGCTAGAAATGATGAATATAAGCGTGTTGAG
66 AACTGACCTCTTTGCCCTTCAGAGCAAGTT-AAATGCTAGAAATGATGAATATAAGCGTGTTGAG
* * * * *
49348014 GAAGAACTCAAACTGAACTTGAAAGGAGGATAGCA-GTATCAATTTTGTTCTATTGCCATT-GTG
130 GAAGAACT--AAC---A-TTAAAAGGAGAATA-AAGGAATCAATTTTGTTATATTGCC-TTAG-G
* *
49348077 -AGGCTGAAGCTAGTTCT-TTACACCATATGTATGAAATGAGGCTTGAAATGGATCGAGCTGCTC
186 AAGGCTGAAGCTAGTTCTATT-CACCATATGTATGAAATGAGGCTTGAAATAGATCGAGCTCCTC
* * * * *
49348140 A-GAAAAATAAGGAACTTTCTGAAAAAATTTAGTTGATTTACAATCACGATCTTTTACTTCTGAG
250 ACAAAAAACAAGGAACTTTCTGAAAAAATTTAGTTGATTTACAATCACAACCTTTTACTTATGAG
* * * * *
49348204 ACTTTATAAATTTCACGGTTCGCT-AATTTTCAACAACAACATTCTACTTACGAGATTTTACAAA
315 ACTTTACAAATCTCACGG-TCGATCAATTTTCAACAACAACATTCAACTTACGAGACTTTACAAA
** **
49348268 TCTCGTAGTCT-ATTGATTTACGATAA-CATTTTTTTACTTATAGGATTTTATTAAT-CTCACGG
379 TCTCGTAGTCTGA-TGATTTACGATAATCA-CCTTTTACTTATAGGATTTTACGAATGC-CACGG
49348330 TACACTG
441 TACACTG
*
49348337 ATTTACAATCACGACCTT
1 ATTTACGATCACGACCTT
49348355 TTATTTATTA
Statistics
Matches: 395, Mismatches: 60, Indels: 25
0.82 0.12 0.05
Matches are distributed among these distances:
446 2 0.01
447 123 0.31
449 2 0.01
451 3 0.01
452 171 0.43
453 90 0.23
454 4 0.01
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (447 bp):
ATTTACGATCACGACCTTCCACTTACGTGATTTTACAAATCTAGGTGTGTTGAGGAATAACTCAA
AACTGACCTCTTTGCCCTTCAGAGCAAGTTAAATGCTAGAAATGATGAATATAAGCGTGTTGAGG
AAGAACTAACATTAAAAGGAGAATAAAGGAATCAATTTTGTTATATTGCCTTAGGAAGGCTGAAG
CTAGTTCTATTCACCATATGTATGAAATGAGGCTTGAAATAGATCGAGCTCCTCACAAAAAACAA
GGAACTTTCTGAAAAAATTTAGTTGATTTACAATCACAACCTTTTACTTATGAGACTTTACAAAT
CTCACGGTCGATCAATTTTCAACAACAACATTCAACTTACGAGACTTTACAAATCTCGTAGTCTG
ATGATTTACGATAATCACCTTTTACTTATAGGATTTTACGAATGCCACGGTACACTG
Found at i:49348537 original size:54 final size:54
Alignment explanation
Indices: 49348401--49348539 Score: 165
Period size: 54 Copynumber: 2.6 Consensus size: 54
49348391 TTTACAATTA
* *
49348401 CGACCCTCTACTTACGGGATTTTTTGAATCTCGTGATCCTCTAATTTAAGATAAT
1 CGACCATCTACTTACGGGA-TTTTTGAATCTCGTGATCCGCTAATTTAAGATAAT
* * * *
49348456 -GAACTTCTACTTACAGGGATTTTTGAATCTCGTGATCCGCTAATTTATGAT-CT
1 CGACCATCTACTTAC-GGGATTTTTGAATCTCGTGATCCGCTAATTTAAGATAAT
* *
49348509 CGACCATCTAATTACGTGATTTTATGAATCT
1 CGACCATCTACTTACGGGATTTT-TGAATCT
49348540 AAGTGTGTTG
Statistics
Matches: 72, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
53 8 0.11
54 60 0.83
55 4 0.06
ACGTcount: A:0.26, C:0.20, G:0.15, T:0.39
Consensus pattern (54 bp):
CGACCATCTACTTACGGGATTTTTGAATCTCGTGATCCGCTAATTTAAGATAAT
Found at i:49348927 original size:54 final size:54
Alignment explanation
Indices: 49348834--49348989 Score: 163
Period size: 54 Copynumber: 2.9 Consensus size: 54
49348824 AATCTCACAG
* * * * * * *
49348834 TCCACTGATTTTCGATGACGACCTTCTA-ATTA-TGAGATTTTGCGAATCTCGTGG
1 TCCACTGATTTACGATAACGACCTTTTACA-TACAG-GATTTTGCAAATCTCATGA
* * * * *
49348888 TCTACTGATTTACGATAATGACCTTTTATATACAGGATTTTACTAATCTCATGA
1 TCCACTGATTTACGATAACGACCTTTTACATACAGGATTTTGCAAATCTCATGA
*
49348942 TCCACTGATTTATGATAACGACCTTTTACATACAGGATTTTGCAAATC
1 TCCACTGATTTACGATAACGACCTTTTACATACAGGATTTTGCAAATC
49348990 CCACAATACG
Statistics
Matches: 84, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 82 0.98
55 2 0.02
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (54 bp):
TCCACTGATTTACGATAACGACCTTTTACATACAGGATTTTGCAAATCTCATGA
Found at i:49349007 original size:54 final size:54
Alignment explanation
Indices: 49348895--49349023 Score: 141
Period size: 54 Copynumber: 2.4 Consensus size: 54
49348885 TGGTCTACTG
* * * * ** * *
49348895 ATTTACGATAATGACCTTTTATATACAGGATTTTACTAATCTCATGATCCACTG
1 ATTTACGATAACGACCTTTTACATACAGGATTTTACAAATCCCACAATACACTA
* * *
49348949 ATTTATGATAACGACCTTTTACATACAGGATTTTGCAAATCCCACAATACGCTA
1 ATTTACGATAACGACCTTTTACATACAGGATTTTACAAATCCCACAATACACTA
* *
49349003 ATTTACGATCACAACCTTTTA
1 ATTTACGATAACGACCTTTTA
49349024 TTTATAGGGA
Statistics
Matches: 61, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 61 1.00
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.36
Consensus pattern (54 bp):
ATTTACGATAACGACCTTTTACATACAGGATTTTACAAATCCCACAATACACTA
Found at i:49349098 original size:54 final size:55
Alignment explanation
Indices: 49349040--49349183 Score: 157
Period size: 54 Copynumber: 2.7 Consensus size: 55
49349030 GGGATATACA
* * * * * *
49349040 AATCTTGCAGTCCGCTGATTTATGATCAAGACCTTCCT-TTTACAACATCTTACG
1 AATCTCGCAGTCTGCTAATTTAAGATCACGACCTTCCTATTTACAACATATTACG
** * * ** *
49349094 AATCTCGTGGTCTGCTAATTTACGATCACGA-CTTCCTATTTATAGGATATTATG
1 AATCTCGCAGTCTGCTAATTTAAGATCACGACCTTCCTATTTACAACATATTACG
49349148 AATCTCGCAGTCTGCTAATTTAAGATCACGACCTTC
1 AATCTCGCAGTCTGCTAATTTAAGATCACGACCTTC
49349184 TACTTACGTC
Statistics
Matches: 73, Mismatches: 15, Indels: 3
0.80 0.16 0.03
Matches are distributed among these distances:
53 6 0.08
54 63 0.86
55 4 0.05
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.35
Consensus pattern (55 bp):
AATCTCGCAGTCTGCTAATTTAAGATCACGACCTTCCTATTTACAACATATTACG
Found at i:49349206 original size:54 final size:54
Alignment explanation
Indices: 49349036--49349206 Score: 141
Period size: 54 Copynumber: 3.2 Consensus size: 54
49349026 TATAGGGATA
* * * * * * *
49349036 TACAAATCTTGCAGTCCGCTGATTTATGATCAAGACCTTCCT-TTTACAACATCT
1 TACAAATCTCGCAGTCTGCTAATTTAAGATCACGACCTTCCTATTTAC-GCATAT
* ** * * *
49349090 TACGAATCTCGTGGTCTGCTAATTTACGATCACGA-CTTCCTATTTATAGGATAT
1 TACAAATCTCGCAGTCTGCTAATTTAAGATCACGACCTTCCTATTTA-CGCATAT
** * *
49349144 TATGAATCTCGCAGTCTGCTAATTTAAGATCACGACCTT-CTACTTACGTCATTT
1 TACAAATCTCGCAGTCTGCTAATTTAAGATCACGACCTTCCTATTTACG-CATAT
49349198 TACAAATCT
1 TACAAATCT
49349207 AGGTGTGTTA
Statistics
Matches: 91, Mismatches: 22, Indels: 8
0.75 0.18 0.07
Matches are distributed among these distances:
53 7 0.08
54 81 0.89
55 3 0.03
ACGTcount: A:0.27, C:0.23, G:0.13, T:0.36
Consensus pattern (54 bp):
TACAAATCTCGCAGTCTGCTAATTTAAGATCACGACCTTCCTATTTACGCATAT
Found at i:49349206 original size:108 final size:108
Alignment explanation
Indices: 49348999--49349206 Score: 242
Period size: 108 Copynumber: 1.9 Consensus size: 108
49348989 CCCACAATAC
* * * *
49348999 GCTAATTTACGATCACAACCTTTTATTTATAGGGATATACAAATCTTGCAGTCCGCTGATTTATG
1 GCTAATTTACGATCACAACCTTCTATTTATAGGGATATACAAATCTCGCAGTCCGCTAATTTAAG
* *
49349064 ATCAAGACCTTCCTTTTACAACATCTTACGAATCTCGTGGTCT
66 ATCAAGACCTTCCTCTTACAACATCTTACAAATCTCGTGGTCT
* ** *
49349107 GCTAATTTACGATCACGA-CTTCCTATTTATA-GGATATTATGAATCTCGCAGTCTGCTAATTTA
1 GCTAATTTACGATCACAACCTT-CTATTTATAGGGATA-TACAAATCTCGCAGTCCGCTAATTTA
* ** *
49349170 AGATCACGACCTT-CTACTTACGTCATTTTACAAATCT
64 AGATCAAGACCTTCCT-CTTACAACATCTTACAAATCT
49349207 AGGTGTGTTA
Statistics
Matches: 83, Mismatches: 14, Indels: 6
0.81 0.14 0.06
Matches are distributed among these distances:
107 10 0.12
108 73 0.88
ACGTcount: A:0.28, C:0.22, G:0.13, T:0.37
Consensus pattern (108 bp):
GCTAATTTACGATCACAACCTTCTATTTATAGGGATATACAAATCTCGCAGTCCGCTAATTTAAG
ATCAAGACCTTCCTCTTACAACATCTTACAAATCTCGTGGTCT
Found at i:49349543 original size:54 final size:54
Alignment explanation
Indices: 49349455--49349660 Score: 191
Period size: 54 Copynumber: 3.8 Consensus size: 54
49349445 AAGCTTCAGT
* * * ** *
49349455 TGATTTACAATCATGACTTTTTACTTACATGATTTTATGAATCTCACGATCTAC
1 TGATTTACAATAATGACCTTCTACTTACGGGATTTTATGAATCTCACGATCTGC
** * * * ** * *
49349509 AAATTTACGATGA-GAACCTTCTACTTATGGGATTTTACAAATCTCATGATCCGC
1 TGATTTACAATAATG-ACCTTCTACTTACGGGATTTTATGAATCTCACGATCTGC
* * * *
49349563 TGATTTACTATAATGACCTTCTACTAACGGGACTTTATGAATATCAC-AGTCTGC
1 TGATTTACAATAATGACCTTCTACTTACGGGATTTTATGAATCTCACGA-TCTGC
* *
49349617 TGATTTACAATCATGACCTTCTACTTACGTGATTTTATGAATCT
1 TGATTTACAATAATGACCTTCTACTTACGGGATTTTATGAATCT
49349661 AGATGTGTTG
Statistics
Matches: 117, Mismatches: 32, Indels: 6
0.75 0.21 0.04
Matches are distributed among these distances:
53 2 0.02
54 114 0.97
55 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.38
Consensus pattern (54 bp):
TGATTTACAATAATGACCTTCTACTTACGGGATTTTATGAATCTCACGATCTGC
Found at i:49349986 original size:53 final size:53
Alignment explanation
Indices: 49349866--49350040 Score: 199
Period size: 54 Copynumber: 3.3 Consensus size: 53
49349856 TTGCTTTTTG
* *
49349866 GATTTTACGAATCTTATGGTCCGTTAATTTACGATCATG-ACCTTCTACTTATGA
1 GATTTTACGAATCTCACGGTCCGTTAATTTACGAT--TGCACCTTCTACTTATGA
* * * * * *
49349920 GATTTTACAAATCTCGCGGTCCGTTGATTTACAATTGCACCTTCTACCTACGA
1 GATTTTACGAATCTCACGGTCCGTTAATTTACGATTGCACCTTCTACTTATGA
* * * * *
49349973 GATTTTACGAATCTCACGGTCCGCTAATTTACGGTTACAACCTTTTACTTATGT
1 GATTTTACGAATCTCACGGTCCGTTAATTTACGATTGC-ACCTTCTACTTATGA
49350027 GATTTTACGAATCT
1 GATTTTACGAATCT
49350041 AGATGTGTTG
Statistics
Matches: 100, Mismatches: 19, Indels: 4
0.81 0.15 0.03
Matches are distributed among these distances:
52 2 0.02
53 44 0.44
54 54 0.54
ACGTcount: A:0.25, C:0.22, G:0.15, T:0.38
Consensus pattern (53 bp):
GATTTTACGAATCTCACGGTCCGTTAATTTACGATTGCACCTTCTACTTATGA
Found at i:49350031 original size:380 final size:380
Alignment explanation
Indices: 49349273--49350069 Score: 915
Period size: 380 Copynumber: 2.1 Consensus size: 380
49349263 GCTAGAGATG
* * * * * *
49349273 ATGAATGTAGATGTGTTGAGGAAGAACTTAAAACTGACCTTTAAATAAGGAGGATAGAGGAATCA
1 ATGAATCTAGATGTGTTGAGGAAGAACTCAAAACTGACCTTGAAAGAAGAAGGATAGAAGAATCA
* * * *
49349338 ATTTTGTTATATTGCCTTTGTGAAGCTGAAGCTAGTTCTCTTACCATAAATCTGAAATGAGGCTT
66 ATTTTGTTACATTGCCTCTGTGAAGCTGAAGCTAGTTCTCTCACCACAAATCTGAAATGAGGCTT
* * * *
49349403 AAAATATATCAATCTGCTCAGACAAACAAGAAACTTTTTGAAAAGCTTCAGTTGATTTACAATCA
131 AAAATATATAAATCTACTCAGAAAAACAAGAAACTTTTTAAAAAGCTTCAGTTGATTTACAATCA
* * * *
49349468 TGACTTTTTACTTACATGATTTTATGAATCTCACGATCTACAAATTTACGATGAGAACCTTCTAC
196 CGACTTTTTACTTACATGATTTTACGAATCTCACGATCCACAAATTTACGATCAGAACCTTCTAC
* * *
49349533 TTATGGGATTTTACAAATCTCATGATCCGCTGATTTACTATAATGACCTTCTACTAACGGGACTT
261 TTATGAGATTTTACAAATCTCACGATCCGCTGATTTACTATAATGACCTTCTACTAACGAGACTT
* * * **
49349598 TATGAATATCACAGTCTGCTGATTTACAATCATGACCTTCTACTTACGTGATTTT
326 TACGAATATCACAGTCCGCTAATTTACAATCACAACCTTCTACTTACGTGATTTT
49349653 ATGAATCTAGATGTGTTGAGGAAGAACTCAAAACTGACCTTGAAAGAAGAAGGATAGAAGAATCA
1 ATGAATCTAGATGTGTTGAGGAAGAACTCAAAACTGACCTTGAAAGAAGAAGGATAGAAGAATCA
* * * * *
49349718 ATTTTGTTACATTGCCTCTGTGAGGCTGAAGCTAGTTCTCATCATCACACATTTTAAATGAGGCT
66 ATTTTGTTACATTGCCTCTGTGAAGCTGAAGCTAGTTCTC-TCACCACAAATCTGAAATGAGGCT
* * * * * *
49349783 TCAAAT-TGA-AAGATCTACTCAGAAAAATAAGGAATTTTTTAAAAAGTTTTAGTTGATTTACAA
130 TAAAATAT-ATAA-ATCTACTCAGAAAAACAAGAAACTTTTTAAAAAGCTTCAGTTGATTTACAA
* * ** * * * ***
49349846 TCACGATTTTTTGCTT-TTTGGATTTTACGAATCTTATGGTCCGTTAATTTACGATCATG-ACCT
193 TCACGACTTTTTACTTACAT-GATTTTACGAATCTCACGATCCACAAATTTACGATCA-GAACCT
* * * *
49349909 TCTACTTATGAGATTTTACAAATCTCGCGGTCCGTTGATTTAC-A-ATTGCACCTTCTACCT-AC
256 TCTACTTATGAGATTTTACAAATCTCACGATCCGCTGATTTACTATAATG-ACCTTCTA-CTAAC
* * * ** * * *
49349971 GAGATTTTACGAATCTCACGGTCCGCTAATTTACGGTTACAACCTTTTACTTATGTGATTTT
319 GAGACTTTACGAATATCACAGTCCGCTAATTTACAATCACAACCTTCTACTTACGTGATTTT
* * * *
49350033 ACGAATCTAGATGTGTTGAGAAATAGCTCAAAACTGA
1 ATGAATCTAGATGTGTTGAGGAAGAACTCAAAACTGA
49350070 TATCTTTTTC
Statistics
Matches: 347, Mismatches: 63, Indels: 14
0.82 0.15 0.03
Matches are distributed among these distances:
379 3 0.01
380 191 0.55
381 152 0.44
382 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.35
Consensus pattern (380 bp):
ATGAATCTAGATGTGTTGAGGAAGAACTCAAAACTGACCTTGAAAGAAGAAGGATAGAAGAATCA
ATTTTGTTACATTGCCTCTGTGAAGCTGAAGCTAGTTCTCTCACCACAAATCTGAAATGAGGCTT
AAAATATATAAATCTACTCAGAAAAACAAGAAACTTTTTAAAAAGCTTCAGTTGATTTACAATCA
CGACTTTTTACTTACATGATTTTACGAATCTCACGATCCACAAATTTACGATCAGAACCTTCTAC
TTATGAGATTTTACAAATCTCACGATCCGCTGATTTACTATAATGACCTTCTACTAACGAGACTT
TACGAATATCACAGTCCGCTAATTTACAATCACAACCTTCTACTTACGTGATTTT
Found at i:49350468 original size:54 final size:54
Alignment explanation
Indices: 49350287--49350523 Score: 204
Period size: 54 Copynumber: 4.4 Consensus size: 54
49350277 AAAACTTCAA
* ** *
49350287 TTGATTTACAATCACGACCTTTTACTTCTGAGACATTACGAATCTCACGGTCCG
1 TTGATTTACAATCACGACCTTTTACTTATGAGATTTTACGAATCTCACGGTCTG
* * * * * * * * *
49350341 TTGATTTTCTATGACAACCTTCTACTTACGAGATTTTACAAATCTCATGGTCTA
1 TTGATTTACAATCACGACCTTTTACTTATGAGATTTTACGAATCTCACGGTCTG
* * * *
49350395 CTGATTTACAATAACGACCTTTTAATTATGAGATTTTACGAACCTCACGGTCTG
1 TTGATTTACAATCACGACCTTTTACTTATGAGATTTTACGAATCTCACGGTCTG
* * * ** * * *** *
49350449 TTGATTTACTATCATGACCTTCTACAAATGGGATTTTTCGAATCTTGTGGTCTA
1 TTGATTTACAATCACGACCTTTTACTTATGAGATTTTACGAATCTCACGGTCTG
* *
49350503 CTGATTTACGATCACGACCTT
1 TTGATTTACAATCACGACCTT
49350524 CTCCTTACAT
Statistics
Matches: 140, Mismatches: 43, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
54 140 1.00
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.38
Consensus pattern (54 bp):
TTGATTTACAATCACGACCTTTTACTTATGAGATTTTACGAATCTCACGGTCTG
Found at i:49350484 original size:108 final size:108
Alignment explanation
Indices: 49350288--49350523 Score: 292
Period size: 108 Copynumber: 2.2 Consensus size: 108
49350278 AAACTTCAAT
* * * *
49350288 TGATTTACAATCACGACCTTTTACTTCTGAGACATTACGAATCTCACGGTCCGTTGATTTTCTAT
1 TGATTTACAATCACGACCTTTTAATTATGAGACATTACGAACCTCACGGTCCGTTGATTTACTAT
* **
49350353 GACAACCTTCTACTTACGAGATTTTACAAATCTCATGGTCTAC
66 CACAACCTTCTACAAACGAGATTTTACAAATCTCATGGTCTAC
* ** *
49350396 TGATTTACAATAACGACCTTTTAATTATGAGATTTTACGAACCTCACGGTCTGTTGATTTACTAT
1 TGATTTACAATCACGACCTTTTAATTATGAGACATTACGAACCTCACGGTCCGTTGATTTACTAT
** * * * * **
49350461 CATGACCTTCTACAAATGGGATTTTTCGAATCTTGTGGTCTAC
66 CACAACCTTCTACAAACGAGATTTTACAAATCTCATGGTCTAC
*
49350504 TGATTTACGATCACGACCTT
1 TGATTTACAATCACGACCTT
49350524 CTCCTTACAT
Statistics
Matches: 107, Mismatches: 21, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
108 107 1.00
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.37
Consensus pattern (108 bp):
TGATTTACAATCACGACCTTTTAATTATGAGACATTACGAACCTCACGGTCCGTTGATTTACTAT
CACAACCTTCTACAAACGAGATTTTACAAATCTCATGGTCTAC
Found at i:49351487 original size:54 final size:53
Alignment explanation
Indices: 49351382--49351505 Score: 142
Period size: 54 Copynumber: 2.3 Consensus size: 53
49351372 TTCTAAATAT
* ** *
49351382 GAGATTTTACGAACCTCGTGGTCTGTTGATTTACGATAATGACATTTTACTTA
1 GAGATTTTACGAATCTCGTGGTCTAATGATTTACGATAATGACATTCTACTTA
* *
49351435 CGAGATTTTACGAATCTCTTGGTCTAATGATTTACGATCATGACCA-TCTACTTA
1 -GAGATTTTACGAATCTCGTGGTCTAATGATTTACGATAATGA-CATTCTACTTA
* *
49351489 TAGGATTTTATGAATCT
1 GA-GATTTTACGAATCT
49351506 TCTGTTTCGT
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
53 1 0.02
54 57 0.95
55 2 0.03
ACGTcount: A:0.27, C:0.16, G:0.17, T:0.40
Consensus pattern (53 bp):
GAGATTTTACGAATCTCGTGGTCTAATGATTTACGATAATGACATTCTACTTA
Found at i:49352033 original size:54 final size:54
Alignment explanation
Indices: 49351843--49352036 Score: 147
Period size: 54 Copynumber: 3.6 Consensus size: 54
49351833 ACTTTCTAGA
* * ** * * * *
49351843 TTTACGAATCTCACGGTCCACTAATTTACGATCATGACTTTCTACTTACGAGAT
1 TTTATGAATCTCATGGTCTGCTAATTTACGATCATGACCTTCTACCTATGGGAT
* * * * ** *
49351897 TTTATGAATCTCTTGATTTGATAATTTTAAAATCATGATCTTCTA-CTAATGGGAT
1 TTTATGAATCTCATGGTCTGCTAA-TTTACGATCATGACCTTCTACCT-ATGGGAT
** ** *** *
49351952 TTTACAAATCTCACAGTCCATTGATTTACGATCATGACCTTCTACCTATGGGAT
1 TTTATGAATCTCATGGTCTGCTAATTTACGATCATGACCTTCTACCTATGGGAT
*
49352006 TTTATGAATCTCGTGGTCTGCTAATTTACGA
1 TTTATGAATCTCATGGTCTGCTAATTTACGA
49352037 CCGCGACTTT
Statistics
Matches: 99, Mismatches: 38, Indels: 6
0.69 0.27 0.04
Matches are distributed among these distances:
54 63 0.64
55 36 0.36
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.39
Consensus pattern (54 bp):
TTTATGAATCTCATGGTCTGCTAATTTACGATCATGACCTTCTACCTATGGGAT
Found at i:49352414 original size:54 final size:54
Alignment explanation
Indices: 49352350--49352489 Score: 145
Period size: 54 Copynumber: 2.6 Consensus size: 54
49352340 CTTTTGAGTC
* * *** * *
49352350 TTTACGAATCTCATTGTCTGCTGATTTTTTATGACAACCTTCTAAATATGAGAT
1 TTTACAAATCTCATGGTCTGCTGATTTACGATAACAACCTTCTAAATACGAGAT
* * * **
49352404 TTTACAAATCTCGTGGTCTGTTGATTTACGATAACAACCTTTTACTTACGAGAT
1 TTTACAAATCTCATGGTCTGCTGATTTACGATAACAACCTTCTAAATACGAGAT
* **
49352458 TTTACAAATCTCCTGGTCCACTGATTTACGAT
1 TTTACAAATCTCATGGTCTGCTGATTTACGAT
49352490 CACGACCATC
Statistics
Matches: 70, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 70 1.00
ACGTcount: A:0.27, C:0.19, G:0.14, T:0.40
Consensus pattern (54 bp):
TTTACAAATCTCATGGTCTGCTGATTTACGATAACAACCTTCTAAATACGAGAT
Found at i:49352504 original size:54 final size:54
Alignment explanation
Indices: 49352399--49352576 Score: 169
Period size: 54 Copynumber: 3.3 Consensus size: 54
49352389 TTCTAAATAT
* * * * * *
49352399 GAGATTTTACAAATCTCGTGGTCTGTTGATTTACGATAACAACCTTTTACTTAC
1 GAGATTTTACAAATCTCCTGGTCCGTTGATTTACGATCACGACCATCTACTTAC
**
49352453 GAGATTTTACAAATCTCCTGGTCCACTGATTTACGATCACGACCATCTACTTA-
1 GAGATTTTACAAATCTCCTGGTCCGTTGATTTACGATCACGACCATCTACTTAC
* * * ** * * *
49352506 TAGGATTTTACGAATCTTCTATTCCGTTGATTTACAATCACGACCCTCAACTTAC
1 GA-GATTTTACAAATCTCCTGGTCCGTTGATTTACGATCACGACCATCTACTTAC
** *
49352561 TTGATTTTACGAATCT
1 GAGATTTTACAAATCT
49352577 AGGCATGTTG
Statistics
Matches: 103, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
53 1 0.01
54 101 0.98
55 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.13, T:0.37
Consensus pattern (54 bp):
GAGATTTTACAAATCTCCTGGTCCGTTGATTTACGATCACGACCATCTACTTAC
Found at i:49352989 original size:55 final size:54
Alignment explanation
Indices: 49352879--49353009 Score: 154
Period size: 55 Copynumber: 2.4 Consensus size: 54
49352869 CAGTCCGTTG
* * ** * **
49352879 ATTTATGATCACGACCTTCTACTTACGAGATTTTATGAATCTCGTGATTTGCTA
1 ATTTAAGATCACGACCTTCTACTAACGAGATTTTACAAATCTCGCGATTCCCTA
* *
49352933 ATTTTAAGATCACGATCTTCTACTAACGAGATTTTACAAATCTCGCGGTTCCCTA
1 A-TTTAAGATCACGACCTTCTACTAACGAGATTTTACAAATCTCGCGATTCCCTA
* *
49352988 ATTTACGATCATGACCTTCTAC
1 ATTTAAGATCACGACCTTCTAC
49353010 CCATAGGATT
Statistics
Matches: 64, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
54 19 0.30
55 45 0.70
ACGTcount: A:0.27, C:0.22, G:0.13, T:0.37
Consensus pattern (54 bp):
ATTTAAGATCACGACCTTCTACTAACGAGATTTTACAAATCTCGCGATTCCCTA
Found at i:49353084 original size:507 final size:507
Alignment explanation
Indices: 49349866--49353513 Score: 3057
Period size: 507 Copynumber: 7.2 Consensus size: 507
49349856 TTGCTTTTTG
** * * * * * * * * *
49349866 GATTTTACGAATCTTATGGTCCGTTAATTTACGATCATGACCTTCTACTTATGAGATTTTACAAA
1 GATTTTACGAATCTCGTGATCTGCTAATTTAAGATAACGATCTTCTACTAACGAGATTTTACAAA
* * * * * **
49349931 TCTCGCGGTCCGTTGATTTACAAT--TGCACCTTCTACCTA-CGAGATTTTACGAATCTCACGGT
66 TCTCACGGTCCATTGATTTACGATCATG-ACCTTCTACCTATAG-GATTTTATGAATCTTGCGGT
** * * * * * * ** *
49349993 CCGCTAATTTACGGTTACAACCTTTTACTTATGTGATTTTACGAATCTAGATGTGTTGAGAAATA
129 CTACTTATTTACGATCACGACCTTCTACTTACGTGATTTTACGAATCTAGGCGTGTTGAGGAATA
* * * * * * * * *
49350058 GCTCAAAACTGATATCTTTT-TCCTTTAGTGCAAGATAGATGCTAAAGATGATGAATATAGGTGT
194 ACTCAAAACTG--ACCTTTTACCCTTCAGAGCAAGCTAGAAGCTAGAGATGATGAATATAGGCGT
* * * *
49350122 GCTGAGGAAGAACTCAAAACTGACCTTGAAAGGAGGATAGAGGTATTAATTTTTTTATATTGCCT
257 GTTGAGGAAGAACTCAAAACTGACCTTAAAAGGAGGATAGAGGTATCAATTTTGTTATATTGCCT
* ** * * *
49350187 TTGTGAGGCTA-AAGCTAGTTCTCTTCACCGTACGTTTGAAATGAGGCTTGAAATGGGTCA-ATC
322 TTGTGAAGCTAGAAGCTAGTTCTCAACACCATACATTTGAAATGAGGCTTGAAATGGAT-AGATC
** * * * ** *
49350250 TGTTCATAAGAACAAGGAACTTTCTGAAAAACTTCAATTGATTTACAATCACGACCTTTTAC-TT
386 TACTCAGAAAAACAAGGAACTTTCTTAAAAGTTTCAATTGATTTACAATCATGACCTTTTACTTT
** ** * *
49350314 CTGAGACATTACGAATCTCACGGTCCGTTGATTT-TCTATGACAACCTTCTACTTACGA
451 CTG-GATTTTACGAATCTCACGGTCCACTGATTTAT-GATCACAACCTTCTACTTACGA
* * * * * * * * * * *
49350372 GATTTTACAAATCTCATGGTCTACTGATTTACA-ATAACGACCTTTTAATTATGAGATTTTACGA
1 GATTTTACGAATCTCGTGATCTGCTAATTTA-AGATAACGATCTTCTACTAACGAGATTTTACAA
* ** * ** * *
49350436 ACCTCACGGTCTGTTGATTTACTATCATGACCTTCTACAAATGGGATTTT-TCGAATCTTGTGGT
65 ATCTCACGGTCCATTGATTTACGATCATGACCTTCTACCTATAGGATTTTAT-GAATCTTGCGGT
* * * ** *
49350500 CTACTGATTTACGATCACGACCTTCTCCTTACATGATTTTACGAAAGTAGGCGTGTTGAAGAATA
129 CTACTTATTTACGATCACGACCTTCTACTTACGTGATTTTACGAATCTAGGCGTGTTGAGGAATA
* * * * * *
49350565 ACTCAAAACTAATCTTTCTACCCTTCAAAGCAAGTTAGAAGATAGAGATGATGAATATAGGTGTG
194 ACTCAAAACTGACCTTT-TACCCTTCAGAGCAAGCTAGAAGCTAGAGATGATGAATATAGGCGTG
* * * * * * * **
49350630 TTTAGGAAGAACGCAAAAGTGACCTTGAAAGAAGGAGGATAAATGAATCAATTTTGTTAGATTTT
258 TTGAGGAAGAACTCAAAACTGACCTT--AA-AAGGAGGATAGAGGTATCAATTTTGTTATATTGC
* * * * *
49350695 CTTTGTGAAGCT-GAAGCTAGTTCTCAAAACGATACATTTGAAATGAGGTTTGTAATGGATCGAT
320 CTTTGTGAAGCTAGAAGCTAGTTCTCAACACCATACATTTGAAATGAGGCTTGAAATGGATAGAT
* * * * * * *
49350759 TTGCTCAAAAAAACAATGAAATTTCTTTAAAGTTTCAATTGATTTACAATCATAACCTTTTACTT
385 CTACTCAGAAAAACAAGGAACTTTCTTAAAAGTTTCAATTGATTTACAATCATGACCTTTTACTT
* * *
49350824 TCTAGATTTTACGAATATCACGGTCCACTGATTTATGATCACGACCTTCTACTTACGA
450 TCTGGATTTTACGAATCTCACGGTCCACTGATTTATGATCACAACCTTCTACTTACGA
* * * * * * * *
49350882 GATTTTACGAATCTAGCGATTTGCCAATTTTAAGATCATGATCTTCTACTAATGGGATTTTACAA
1 GATTTTACGAATCTCGTGATCTGCTAA-TTTAAGATAACGATCTTCTACTAACGAGATTTTACAA
** * * **
49350947 GCCTCGCGGTCCATTGATTTATGATCATGA-C--CTACCTACT-GGATTTTATGAATCTTATGGT
65 ATCTCACGGTCCATTGATTTACGATCATGACCTTCTACCTA-TAGGATTTTATGAATCTTGCGGT
* * * * * *
49351008 CTACTTATTTACAATCACGACCTTCTACTTACATGCTTCTACAAATCTAGGCATGTTGAGGAATA
129 CTACTTATTTACGATCACGACCTTCTACTTACGTGATTTTACGAATCTAGGCGTGTTGAGGAATA
* * *
49351073 ACTCAAAACTGACCTCTTTGCCCTTCAGAGCAAGCTAGATGCTAGAGATGATGAATATAGGCATG
194 ACTCAAAACTGACCT-TTTACCCTTCAGAGCAAGCTAGAAGCTAGAGATGATGAATATAGGCGTG
* * * * * *
49351138 TTGAGAAAGAACTC-AAACTAAACTTGAAAA-AAAGATAGAGGTATCAATTTTGTTATATTACCT
258 TTGAGGAAGAACTCAAAACTGACCTT-AAAAGGAGGATAGAGGTATCAATTTTGTTATATTGCCT
* ** * * * *
49351201 TTGT-AAGGTAGAAGCTAGTTCTCTTCACCAAACGTCTGAAATGAGGCTTGAAATGCATCA-ATC
322 TTGTGAAGCTAGAAGCTAGTTCTCAACACCATACATTTGAAATGAGGCTTGAAATGGAT-AGATC
* * * * *
49351264 TGCT-A-AAAAACAAGGAACTTTCTGAAAAACTTT-AGTTGATTTACAGTCATGACCTTTTACTT
386 TACTCAGAAAAACAAGGAACTTTCT-TAAAAGTTTCAATTGATTTACAATCATGACCTTTTACTT
* * * * * * * * ** *
49351326 CCAGGTTTTTACGAATCTCATGGTCTACTGATTTTTTATGACAACCTTCTAAATATGA
450 TCTGGATTTTACGAATCTCACGGTCCACTGATTTATGATCACAACCTTCTACTTACGA
* * * * * * * * *
49351384 GATTTTACGAACCTCGTGGTCTGTTGATTTACGATAATGA-CATTTTACTTACGAGATTTTACGA
1 GATTTTACGAATCTCGTGATCTGCTAATTTAAGATAACGATC-TTCTACTAACGAGATTTTACAA
** * * * * *
49351448 ATCTCTTGGTCTAATGATTTACGATCATGACCATCTACTTATAGGATTTTATGAATCTT-CTGT-
65 ATCTCACGGTCCATTGATTTACGATCATGACCTTCTACCTATAGGATTTTATGAATCTTGCGGTC
* * * * * *
49351511 TTCGTTTATTTACAACCACGACCTTCAACTTACTTGATTTTACGAATCTAGGCATGTTGAGGAAT
130 TAC--TTATTTACGATCACGACCTTCTACTTACGTGATTTTACGAATCTAGGCGTGTTGAGGAAT
* * * * * *
49351576 AACTCAAAATTAACCTTTCTACCCTTTAGAGCAAGTTAGAAGCTAGAGATGATGAATATAGACAT
193 AACTCAAAACTGACCTTT-TACCCTTCAGAGCAAGCTAGAAGCTAGAGATGATGAATATAGGCGT
* * * * * *
49351641 GCTGAGAAAGAACTCAAAATTGACCTTGAAAGAAGGAGGATAGAGGAATCAATTTTGTTACATTT
257 GTTGAGGAAGAACTCAAAACTGACCTT--AA-AAGGAGGATAGAGGTATCAATTTTGTTATATTG
* * * * * *
49351706 TCTTTGTGAGGCT-GGAGCTAGTTTTCAACACCATACATTTGAAATGAGGCTTCAAATGGATCGA
319 CCTTTGTGAAGCTAGAAGCTAGTTCTCAACACCATACATTTGAAATGAGGCTTGAAATGGATAGA
** * * ** *
49351770 TCTACTCAGAAAAACAAGGAACTTAATTAAAAGTTTTAGTTTTTTTTATAATCATGACCTTTTAC
384 TCTACTCAGAAAAACAAGGAACTTTCTTAAAAGTTTCA-ATTGATTTACAATCATGACCTTTTAC
* * * ** *
49351835 TTTCTAGA-TTTACGAATCTCACGGTCCACTAATTTACGATCATGACTTTCTACTTACGA
448 TTTCTGGATTTTACGAATCTCACGGTCCACTGATTTATGATCACAACCTTCTACTTACGA
* * * * * * * * *
49351894 GATTTTATGAATCTCTTGATTTGATAATTTTAAAATCATGATCTTCTACTAATGGGATTTTACAA
1 GATTTTACGAATCTCGTGATCTGCTAA-TTTAAGATAACGATCTTCTACTAACGAGATTTTACAA
* * * *
49351959 ATCTCACAGTCCATTGATTTACGATCATGACCTTCTACCTATGGGATTTTATGAATCTCGTGGTC
65 ATCTCACGGTCCATTGATTTACGATCATGACCTTCTACCTATAGGATTTTATGAATCTTGCGGTC
* * * * * * * ** *
49352024 TGCTAATTTACGACCGCGACTTTTTACTTATGTTCTTTTAGGAATCTAGGCGTGTTGAGGAATAA
130 TACTTATTTACGATCACGACCTTCTACTTACGTGATTTTACGAATCTAGGCGTGTTGAGGAATAA
* * * * * *
49352089 CTCAAAACTGACCTCTTTGCCCTTTAGAGAAAGCTA-AATGCTAAAGATGATGACTATAAGCGTG
195 CTCAAAACTGACCT-TTTACCCTTCAGAGCAAGCTAGAA-GCTAGAGATGATGAATATAGGCGTG
* * * *
49352153 TTGAGGAAGAACTC-AAACTAACCTTGAAAGGAGGATAGGGGTATCAATTTTTTTATATTGCCTT
258 TTGAGGAAGAACTCAAAACTGACCTTAAAAGGAGGATAGAGGTATCAATTTTGTTATATTGCCTT
** *** * * * * *
49352217 TGT-AATGCT-GAAGCTAGTTCTCTTCGTGAAACGTCTGAAATGAGGCTTGAAATGCATTGATCT
323 TGTGAA-GCTAGAAGCTAGTTCTCAACACCATACATTTGAAATGAGGCTTGAAATGGATAGATCT
* * * * * * * *
49352280 ATTCAGAAAAATAAGGAACTTTATGAAAAATTTTAGTTAATTTACAATCATGACCTTTTACTTT-
387 ACTCAGAAAAACAAGGAACTTTCTTAAAAGTTTCAATTGATTTACAATCATGACCTTTTACTTTC
** ** * * * ** *
49352344 T-GAGTCTTTACGAATCTCATTGTCTGCTGATTTTTTATGACAACCTTCTAAATATGA
452 TGGA-T-TTTACGAATCTCACGGTCCACTGATTTATGATCACAACCTTCTACTTACGA
* * * * * * * * *
49352401 GATTTTACAAATCTCGTGGTCTGTTGATTTACGATAACAACCTTTTACTTACGAGATTTTACAAA
1 GATTTTACGAATCTCGTGATCTGCTAATTTAAGATAACGATCTTCTACTAACGAGATTTTACAAA
* * * * * **
49352466 TCTC-CTGGTCCACTGATTTACGATCACGACCATCTACTTATAGGATTTTACGAATCTT-CTAT-
66 TCTCAC-GGTCCATTGATTTACGATCATGACCTTCTACCTATAGGATTTTATGAATCTTGCGGTC
* * * * * *
49352528 TCCGTTGATTTACAATCACGACCCTCAACTTACTTGATTTTACGAATCTAGGCATGTTGAGGAAT
130 TAC-TT-ATTTACGATCACGACCTTCTACTTACGTGATTTTACGAATCTAGGCGTGTTGAGGAAT
* * *
49352593 AACTCAAAACTGACCTTTCTACCCTTCAGAGCAAGTTAGAAGCTAGAGATGATGGATATAGGTGT
193 AACTCAAAACTGACCTTT-TACCCTTCAGAGCAAGCTAGAAGCTAGAGATGATGAATATAGGCGT
* * * * *
49352658 GTTGAGGAAGAACTCAAAATTGACATTAAAAGGAGGATAGAGGAATCAATTTTGTTACATTGTCT
257 GTTGAGGAAGAACTCAAAACTGACCTTAAAAGGAGGATAGAGGTATCAATTTTGTTATATTGCCT
* * * *
49352723 TTGTGATGTTAG-AGCTAGTTCTCAACACCATACATTTGAAATGAGGTTTGTAATGGATAGATCT
322 TTGTGAAGCTAGAAGCTAGTTCTCAACACCATACATTTGAAATGAGGCTTGAAATGGATAGATCT
* * * * *
49352787 ACTCAGAAAAACAATGAAATTTCTTAAAAGTTTCAATTGATTTACAACCATGAACTTTTA-TTTT
387 ACTCAGAAAAACAAGGAACTTTCTTAAAAGTTTCAATTGATTTACAATCATGACCTTTTACTTTC
* ** *
49352851 TGGATTTTACGAATCTCACAGTCCGTTGATTTATGATCACGACCTTCTACTTACGA
452 TGGATTTTACGAATCTCACGGTCCACTGATTTATGATCACAACCTTCTACTTACGA
* * *
49352907 GATTTTATGAATCTCGTGATTTGCTAATTTTAAGATCACGATCTTCTACTAACGAGATTTTACAA
1 GATTTTACGAATCTCGTGATCTGCTAA-TTTAAGATAACGATCTTCTACTAACGAGATTTTACAA
* * * * * *
49352972 ATCTCGCGGTTCC-CTAATTTACGATCATGACCTTCTACCCATAGGATTTTATGAACCTTGCAGT
65 ATCTCACGG-TCCATTGATTTACGATCATGACCTTCTACCTATAGGATTTTATGAATCTTGCGGT
* * * * * *
49353036 CTATTTATTTACGATGACAACTTTTTACTTACGT-ACTTTTATGAATCTAGGCGTGTTGAGGAAT
129 CTACTTATTTACGATCACGACCTTCTACTTACGTGA-TTTTACGAATCTAGGCGTGTTGAGGAAT
* * *
49353100 AACTCAAAACTGACCTCTTTGCCCTTCAGAGCAAGCT-GATTGCTAGAGATGATGAATATAAGCG
193 AACTCAAAACTGACCT-TTTACCCTTCAGAGCAAGCTAGA-AGCTAGAGATGATGAATATAGGCG
* * * *
49353164 TGTTGAGGAAGAACTC-AAACTAAGCTTGAAAGAAGGATAGAGGTATCAATTTTGTTATATTGCC
256 TGTTGAGGAAGAACTCAAAACTGACCTTAAAAGGAGGATAGAGGTATCAATTTTGTTATATTGCC
* * * * * * *
49353228 TTTGTG-AG-TATGAAACTAGTTCTCAACACCATACATATGAAATGAGACTTAAAATGAATCGAA
321 TTTGTGAAGCTA-GAAGCTAGTTCTCAACACCATACATTTGAAATGAGGCTTGAAATGGATAGAT
* * * * * * * * * *
49353291 CTACTTAAAAAAATAAGGAACTTTGTGAAAAATTT-AGTTGATTTACGATCACGACATTTTACTT
385 CTACTCAGAAAAACAAGGAACTTTCTTAAAAGTTTCAATTGATTTACAATCATGACCTTTTACTT
* * * * * * ** * * *
49353355 CCAGGACTATACGAATTTCATGGTCCGTTGATTTTTAATGACAACCTTCTACTTACGA
450 TCTGGATTTTACGAATCTCACGGTCCACTGATTTATGATCACAACCTTCTACTTACGA
* * * * *** * * * * **
49353413 GATTTTACGAATCTCATGGTCTACTGATTGCCGATAACAACCTTTTACTTACGAGATTTTATGAA
1 GATTTTACGAATCTCGTGATCTGCTAATTTAAGATAACGATCTTCTACTAACGAGATTTTACAAA
* * * *
49353478 TCTCATGGTCTACTGATTTTCGATCATGACCTTCTA
66 TCTCACGGTCCATTGATTTACGATCATGACCTTCTA
49353514 TTTATGTGAT
Statistics
Matches: 2491, Mismatches: 579, Indels: 145
0.77 0.18 0.05
Matches are distributed among these distances:
500 1 0.00
501 51 0.02
502 108 0.04
503 16 0.01
504 226 0.09
505 100 0.04
506 538 0.22
507 645 0.26
508 236 0.09
509 17 0.01
510 278 0.11
511 268 0.11
512 5 0.00
513 2 0.00
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35
Consensus pattern (507 bp):
GATTTTACGAATCTCGTGATCTGCTAATTTAAGATAACGATCTTCTACTAACGAGATTTTACAAA
TCTCACGGTCCATTGATTTACGATCATGACCTTCTACCTATAGGATTTTATGAATCTTGCGGTCT
ACTTATTTACGATCACGACCTTCTACTTACGTGATTTTACGAATCTAGGCGTGTTGAGGAATAAC
TCAAAACTGACCTTTTACCCTTCAGAGCAAGCTAGAAGCTAGAGATGATGAATATAGGCGTGTTG
AGGAAGAACTCAAAACTGACCTTAAAAGGAGGATAGAGGTATCAATTTTGTTATATTGCCTTTGT
GAAGCTAGAAGCTAGTTCTCAACACCATACATTTGAAATGAGGCTTGAAATGGATAGATCTACTC
AGAAAAACAAGGAACTTTCTTAAAAGTTTCAATTGATTTACAATCATGACCTTTTACTTTCTGGA
TTTTACGAATCTCACGGTCCACTGATTTATGATCACAACCTTCTACTTACGA
Found at i:49353538 original size:29 final size:29
Alignment explanation
Indices: 49353491--49353554 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 29
49353481 CATGGTCTAC
* ** *
49353491 TGATTTTCGATCATGACCTTCTATTTATG
1 TGATTTACGATCACAACCTTCTACTTATG
49353520 TGATTTACGATCACAACCTTCTACTTATG
1 TGATTTACGATCACAACCTTCTACTTATG
*
49353549 GGATTT
1 TGATTT
49353555 TATGAATCTC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.23, C:0.19, G:0.14, T:0.44
Consensus pattern (29 bp):
TGATTTACGATCACAACCTTCTACTTATG
Found at i:49353671 original size:54 final size:54
Alignment explanation
Indices: 49353522--49353671 Score: 169
Period size: 54 Copynumber: 2.8 Consensus size: 54
49353512 TATTTATGTG
* * *
49353522 ATTTACGATCACAACCTTCTACTTATGGGATTTTATGAATCTCGCAATTCGCTA
1 ATTTACAATCACAACCTTCTACTTACGGGATTTTACGAATCTCGCAATTCGCTA
* * ** *
49353576 ATTTAAAATAATGACCTTCTACTTACGGGGA-TTTACAAATCTCGCAA-TCTGCTA
1 ATTTACAATCACAACCTTCTACTTAC-GGGATTTTACGAATCTCGCAATTC-GCTA
* * *
49353630 ATTTACAATCACAACCTTCTAATTACGTGATTTTGCGAATCT
1 ATTTACAATCACAACCTTCTACTTACGGGATTTTACGAATCT
49353672 AGGAATGTTA
Statistics
Matches: 77, Mismatches: 16, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
53 5 0.06
54 68 0.88
55 4 0.05
ACGTcount: A:0.31, C:0.21, G:0.12, T:0.36
Consensus pattern (54 bp):
ATTTACAATCACAACCTTCTACTTACGGGATTTTACGAATCTCGCAATTCGCTA
Found at i:49354245 original size:54 final size:54
Alignment explanation
Indices: 49354140--49354290 Score: 162
Period size: 54 Copynumber: 2.8 Consensus size: 54
49354130 ATACATATGG
* * ** * *
49354140 GGATA-TACGAATCTCACGGTCTACTGATTTACGATCAATACCTTCTTTTTACA
1 GGATATTACGAATTTCACGGTCTACTAATTTACGATCACGACCTCCTATTTACA
* *
49354193 GGATCTTACGAATTTCACGGTCTACTAATTTACGATCACGACCTCCTATTTACG
1 GGATATTACGAATTTCACGGTCTACTAATTTACGATCACGACCTCCTATTTACA
* ** * *
49354247 GGATATTACAAATCTT-GTGATCTAATAATTTACGATCACGACCT
1 GGATATTACGAAT-TTCACGGTCTACTAATTTACGATCACGACCT
49354291 TTTACTTACG
Statistics
Matches: 82, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
53 4 0.05
54 76 0.93
55 2 0.02
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.34
Consensus pattern (54 bp):
GGATATTACGAATTTCACGGTCTACTAATTTACGATCACGACCTCCTATTTACA
Found at i:49354300 original size:54 final size:54
Alignment explanation
Indices: 49354213--49354315 Score: 143
Period size: 54 Copynumber: 1.9 Consensus size: 54
49354203 AATTTCACGG
* *
49354213 TCTACTAATTTACGATCACGACCTCCTATTTACGGGATATTACAAATCTTGTGA
1 TCTAATAATTTACGATCACGACCTCCTACTTACGGGATATTACAAATCTTGTGA
** * * *
49354267 TCTAATAATTTACGATCACGACCTTTTACTTACGTGATTTTACGAATCT
1 TCTAATAATTTACGATCACGACCTCCTACTTACGGGATATTACAAATCT
49354316 AGGCGTGTTG
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 42 1.00
ACGTcount: A:0.29, C:0.21, G:0.12, T:0.38
Consensus pattern (54 bp):
TCTAATAATTTACGATCACGACCTCCTACTTACGGGATATTACAAATCTTGTGA
Found at i:49354765 original size:54 final size:54
Alignment explanation
Indices: 49354690--49354824 Score: 144
Period size: 54 Copynumber: 2.5 Consensus size: 54
49354680 TACGATAACA
* * ** *
49354690 ACCTTCTACTAACGGGATTTTATGAATATCACGTTCCGCTAATTTACAATTACG
1 ACCTTCTACTTACGTGATTTTATGAATATCACGGCCCGCTAATTTACAATCACG
* * * *** * *
49354744 ACCTTCTACTTACGTGTTTTTAAGAATCTTGTGGCCCGTTAATTTACGATCACG
1 ACCTTCTACTTACGTGATTTTATGAATATCACGGCCCGCTAATTTACAATCACG
*
49354798 ACCTTCTACTTACGTGATTTTCTGAAT
1 ACCTTCTACTTACGTGATTTTATGAAT
49354825 CTATACATGT
Statistics
Matches: 65, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
54 65 1.00
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.39
Consensus pattern (54 bp):
ACCTTCTACTTACGTGATTTTATGAATATCACGGCCCGCTAATTTACAATCACG
Found at i:49355190 original size:510 final size:509
Alignment explanation
Indices: 49354272--49355195 Score: 1175
Period size: 510 Copynumber: 1.8 Consensus size: 509
49354262 TGTGATCTAA
* * *
49354272 TAATTTACGATCACGACCTTTTACTTACGTGATTTTACGAATCTAGGCGTGTTGAGGAAGAACCT
1 TAATTTACGATCACGACCTTCTACTTACGTGATTTTACGAATCTAGACATGTTGAGGAAGAACCT
* ** * *
49354337 TAAAACTGACTTCTTTGCCCTTTAGAGCAAGTTAGATGCTAGATATAATGAATATAGACATTTTG
66 CAAAACTGAC-TCTTTGCCCTTTAGAGCAAGTTAGAACCTAGAGATAATGAATATAGACATGTTG
* * *
49354402 AGGAAGAACTCAAAACTAACCTTTAAAAAAGGAGGATAGAGGAATCAATTTTGTTACATTGCCTT
130 AGGAAGAACTCAAAACTAACATTGAAAAAAGGAGGATAGAGGAATCAATTTTGTTACAATGCCTT
* * *
49354467 TGTGAAGCTGAAGCTAGTTCTTTTCACCATACGTCTGAAATGAGGCTTAAAATATATCGATCTGC
195 TGTGAAGCTGAAGCCAGTTCTTTTCACCATAC-TCTGAAATGAGGCTTAAAATATATCAATCTAC
* * *
49354532 TCAGAAAAATAAGGAAATTTTTGAAAAGCTTTAGTTGATTTACAATCACGACTTATTACTTACGT
259 TCAGAAAAATAAAGAAATTTTTAAAAAGCTTTAGTTGATTTACAATCACGACTTATCACTTACGT
* * *
49354597 GAAATTATGAATCTCACGATCTACCAATTTATGATGACGACCTTTTACTTATACGATTTTACAAA
324 GAAATTATGAATCTCACGATCTACCAATTTACGATCACGACCTTTTACATATACGATTTTACAAA
*
49354662 TCTCATGGTCCACTGATTTACGATAACAACCTTCTACTAACGGGATTTTATGAATATCACGTTCC
389 TCTCATAGTCCACTGATTTACGATAACAACCTTCTACTAACGGGATTTTATGAATATCACGTTCC
49354727 GCTAATTTACAATTACGACCTTCTACTTACGTGTTTTTAAGAATCTTGTGGCCCGT
454 GCTAATTTACAATTACGACCTTCTACTTACGTGTTTTTAAGAATCTTGTGGCCCGT
*
49354783 TAATTTACGATCACGACCTTCTACTTACGTGATTTT-CTGAATCTATACATGTTGAGGAAGAA-C
1 TAATTTACGATCACGACCTTCTACTTACGTGATTTTAC-GAATCTAGACATGTTGAGGAAGAACC
* * * *
49354846 TCAAAACTGAC-CTTTGTACCTTTTAGAGCAAGTTAGAACCTATAGATGATGAATATAGACGTGT
65 TCAAAACTGACTCTTTG--CCCTTTAGAGCAAGTTAGAACCTAGAGATAATGAATATAGACATGT
* * * * *
49354910 TGAGGAAGAACTCGAAACTGACATTGAAAAAAGGAGGGTAGAGGAATGATTTTTGTTACAATGCC
128 TGAGGAAGAACTCAAAACTAACATTGAAAAAAGGAGGATAGAGGAATCAATTTTGTTACAATGCC
* * *
49354975 TTTGTGAGGCTGAAGCCAGTTCTCATCTTTA-CATA-TCTGAAATGAGGCTTCAAAT-TGATCAA
193 TTTGTGAAGCTGAAGCCAGTTCT--T-TTCACCATACTCTGAAATGAGGCTTAAAATAT-ATCAA
* * *
49355037 TCTATTCAGAAAAATAAAGAACTTTTTAAAAAG-TTTCAGTTTATTTACAATCACGACCTT-TCA
254 TCTACTCAGAAAAATAAAGAAATTTTTAAAAAGCTTT-AGTTGATTTACAATCACGA-CTTATCA
* * * * * * **** * *
49355100 CTTTC-TGGATTTTTCGAATCTCATGATTTGTTGATTTACGATCATGATCTTTTACATATGA-GA
317 CTTACGTGAAATTAT-GAATCTCACGATCTACCAATTTACGATCACGACCTTTTACATAT-ACGA
* * ***
49355163 TTTTACGAATCTCGTAGTTTGCTGATTTACGAT
380 TTTTACAAATCTCATAGTCCACTGATTTACGAT
49355196 GACGATCATT
Statistics
Matches: 348, Mismatches: 54, Indels: 23
0.82 0.13 0.05
Matches are distributed among these distances:
508 5 0.01
509 10 0.03
510 265 0.76
511 60 0.17
512 5 0.01
513 3 0.01
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (509 bp):
TAATTTACGATCACGACCTTCTACTTACGTGATTTTACGAATCTAGACATGTTGAGGAAGAACCT
CAAAACTGACTCTTTGCCCTTTAGAGCAAGTTAGAACCTAGAGATAATGAATATAGACATGTTGA
GGAAGAACTCAAAACTAACATTGAAAAAAGGAGGATAGAGGAATCAATTTTGTTACAATGCCTTT
GTGAAGCTGAAGCCAGTTCTTTTCACCATACTCTGAAATGAGGCTTAAAATATATCAATCTACTC
AGAAAAATAAAGAAATTTTTAAAAAGCTTTAGTTGATTTACAATCACGACTTATCACTTACGTGA
AATTATGAATCTCACGATCTACCAATTTACGATCACGACCTTTTACATATACGATTTTACAAATC
TCATAGTCCACTGATTTACGATAACAACCTTCTACTAACGGGATTTTATGAATATCACGTTCCGC
TAATTTACAATTACGACCTTCTACTTACGTGTTTTTAAGAATCTTGTGGCCCGT
Found at i:49355219 original size:54 final size:54
Alignment explanation
Indices: 49355106--49355220 Score: 133
Period size: 54 Copynumber: 2.1 Consensus size: 54
49355096 TTCACTTTCT
* * * * *
49355106 GGATTTTTCGAATCTCATGATTTGTTGATTTACGATCATGATCTTTTACATATG
1 GGATTTTACGAATCTCATGATTTGCTGATTTACGATCACGATCATTTACATAAG
* * * *
49355160 AGATTTTACGAATCTCGT-AGTTTGCTGATTTACGATGACGATCATTTACTTAAG
1 GGATTTTACGAATCTCATGA-TTTGCTGATTTACGATCACGATCATTTACATAAG
49355214 GGATTTT
1 GGATTTT
49355221 GTGAGGCTGA
Statistics
Matches: 50, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
53 1 0.02
54 49 0.98
ACGTcount: A:0.25, C:0.13, G:0.18, T:0.43
Consensus pattern (54 bp):
GGATTTTACGAATCTCATGATTTGCTGATTTACGATCACGATCATTTACATAAG
Found at i:49355413 original size:243 final size:242
Alignment explanation
Indices: 49354975--49355413 Score: 514
Period size: 243 Copynumber: 1.8 Consensus size: 242
49354965 TTACAATGCC
* *
49354975 TTTGTGAGGCTGAAGCCAGTTCTCATCTTTACATATCTGAAATGAGGCTTCAAATTGATCAATCT
1 TTTGTGAGGCTGAAGCCAGTTCTCA-CTTCACATATCTGAAATGAGGCTTCAAATGGATCAATCT
* * * * *
49355040 ATTCAGAAAAATAAAGAACTTTTTAAAAAGTTTCAGTTTATTTACAATCACGACCTTTCACTTTC
65 ATTCAGAAAAACAAAGAACTTTCTAAAAAGCTTCAGTTGATTTACAATCACAACCTTTCACTTTC
* * *** ** * * * *
49355105 TGGATTTTTCGAATCTCATGATTTGTTGATTTACGATCATGATCTTTTACATATGAGATTTTACG
130 TGGATTTTACGAATCTCACGATCCATTGATTTACGATCACAACCTTATACATAAGAGACTTTACG
49355170 AATCTCGTAGTTTGCTGATTTACGATGACGATCATTTACTTAAGGGAT
195 AATCTCGTAGTTTGCTGATTTACGATGACGATCATTTACTTAAGGGAT
* * * *
49355218 TTTGTGAGGCTGAAGCTAGTTCTC-C-TCACAATACTTCTGAAATGAGGTTTGAAATGGATCGAT
1 TTTGTGAGGCTGAAGCCAGTTCTCACTTCAC-ATA--TCTGAAATGAGGCTTCAAATGGATCAAT
* *
49355281 CTACTT-AGAAAAACAATA-AACTTTCTAAAGAGCTTCAGTTGATTTAC-ATACACAACCTTTTA
63 CTA-TTCAGAAAAACAA-AGAACTTTCTAAAAAGCTTCAGTTGATTTACAAT-CACAACCTTTCA
* *
49355343 C-TTCTGGGATTTTACGAA-CGTCACGATCCATTTATTTACGATCACAACCTTATACCTAAGAGA
125 CTTTCT-GGATTTTACGAATC-TCACGATCCATTGATTTACGATCACAACCTTATACATAAGAGA
49355406 CTTTACGA
188 CTTTACGA
49355414 TCTAGCAATC
Statistics
Matches: 162, Mismatches: 26, Indels: 16
0.79 0.13 0.08
Matches are distributed among these distances:
240 3 0.02
241 4 0.02
242 7 0.04
243 145 0.90
244 3 0.02
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (242 bp):
TTTGTGAGGCTGAAGCCAGTTCTCACTTCACATATCTGAAATGAGGCTTCAAATGGATCAATCTA
TTCAGAAAAACAAAGAACTTTCTAAAAAGCTTCAGTTGATTTACAATCACAACCTTTCACTTTCT
GGATTTTACGAATCTCACGATCCATTGATTTACGATCACAACCTTATACATAAGAGACTTTACGA
ATCTCGTAGTTTGCTGATTTACGATGACGATCATTTACTTAAGGGAT
Found at i:49355491 original size:54 final size:54
Alignment explanation
Indices: 49355422--49355530 Score: 157
Period size: 54 Copynumber: 2.0 Consensus size: 54
49355412 GATCTAGCAA
* * *
49355422 TCTGCTAATTTACGATAATGACCTT-TTAGTTATGGGATTTTACAAATATCACGG
1 TCTGCTAATTCACGATAATGACCTTCTT-CTTATGAGATTTTACAAATATCACGG
* *
49355476 TCTGCTAATTCACGATGATGACCTTCTTCTTATGAGATTTTACAAATCTCACGG
1 TCTGCTAATTCACGATAATGACCTTCTTCTTATGAGATTTTACAAATATCACGG
49355530 T
1 T
49355531 TCGCTGATTT
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
54 47 0.96
55 2 0.04
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.39
Consensus pattern (54 bp):
TCTGCTAATTCACGATAATGACCTTCTTCTTATGAGATTTTACAAATATCACGG
Found at i:49355974 original size:54 final size:54
Alignment explanation
Indices: 49355907--49356066 Score: 178
Period size: 54 Copynumber: 3.0 Consensus size: 54
49355897 GCGCGGTCCA
* * * *
49355907 CTAATTTATGATGATGACCTTTTACTTATGAGATTTTATGAATCTCGCGGTTAG
1 CTAATTTATGATGATGACCTTTTACTTATGGGATTTTATGAATCTCACGATCAG
* * * * * * *
49355961 CTCATTTACGATGACGACCTTTTACATACGGGACTTTATGAATCTCACGATCCG
1 CTAATTTATGATGATGACCTTTTACTTATGGGATTTTATGAATCTCACGATCAG
* * *
49356015 CTAATTTATGATCATGACTTTTTACTTATGGGATTTTACT-AATATCACGATC
1 CTAATTTATGATGATGACCTTTTACTTATGGGATTTTA-TGAATCTCACGATC
49356067 CATTGATTTA
Statistics
Matches: 85, Mismatches: 20, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
54 84 0.99
55 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.39
Consensus pattern (54 bp):
CTAATTTATGATGATGACCTTTTACTTATGGGATTTTATGAATCTCACGATCAG
Found at i:49356127 original size:54 final size:54
Alignment explanation
Indices: 49356069--49356190 Score: 136
Period size: 54 Copynumber: 2.3 Consensus size: 54
49356059 TCACGATCCA
* * * * * *
49356069 TTGATTTATGATCACAACCTTCTAGTTACAATATTTTATGAATCTCGTGTTTCG
1 TTGATTTACGATCACAACCTTCTACTTACAAGATTTTACGAATCACGTGGTTCG
* ** * *
49356123 TTGATTTACAATCATGACCTTCTACTTATAGGATTTTACGAATCACGTGGTTCG
1 TTGATTTACGATCACAACCTTCTACTTACAAGATTTTACGAATCACGTGGTTCG
*
49356177 TTAATTTACGATCA
1 TTGATTTACGATCA
49356191 TGAATTTCTA
Statistics
Matches: 55, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.42
Consensus pattern (54 bp):
TTGATTTACGATCACAACCTTCTACTTACAAGATTTTACGAATCACGTGGTTCG
Found at i:49356538 original size:54 final size:55
Alignment explanation
Indices: 49356480--49356597 Score: 132
Period size: 54 Copynumber: 2.2 Consensus size: 55
49356470 TTCATTTACA
* * * * * *
49356480 ATCACGACCTTT-TACATCCGAAATTTTACGAATCTTACGGTCCGTTGATTTATG
1 ATCACGACCTTTCTACATACGAAATTTTACAAATATCACGGTCCGCTAATTTATG
* **
49356534 ATCACGA-CTTTCTACTTACGGGATTTTACAAATATCACGGTCCGCTAATTTATG
1 ATCACGACCTTTCTACATACGAAATTTTACAAATATCACGGTCCGCTAATTTATG
*
49356588 ATCACAACCT
1 ATCACGACCT
49356598 ACTATTTACA
Statistics
Matches: 52, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
53 4 0.08
54 46 0.88
55 2 0.04
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.35
Consensus pattern (55 bp):
ATCACGACCTTTCTACATACGAAATTTTACAAATATCACGGTCCGCTAATTTATG
Found at i:49356693 original size:108 final size:108
Alignment explanation
Indices: 49356527--49356777 Score: 256
Period size: 108 Copynumber: 2.3 Consensus size: 108
49356517 CGGTCCGTTG
* * * **
49356527 ATTTATGATCACGACTTTCTACTTACG-GGATTTTACAAATATCACGGTCCGCTAATTTATGATC
1 ATTTATGATCACGACCTTCTACTTACGTGG-TTTTAAAAATATCACGGTCCACTAATTTACAATC
* *
49356591 ACAACCTACTATTTA-CAGGATTCT-ATGAATCTTGAGATCCACTA
65 ACAACCTACTACTTATCA-GATTCTGA-GAATCTCGAGATCCACTA
* * * *
49356635 ATTTATGATCACGACCTTCTACTTACGTGGTTTTAAAAATCTCACGGTCTATTCATTTACAATCA
1 ATTTATGATCACGACCTTCTACTTACGTGGTTTTAAAAATATCACGGTCCACTAATTTACAATCA
* ** * * * * * *
49356700 CGACCTTTTACTTATTAGTTTTTGAGAATCTCGCGGTCCACTG
66 CAACCTACTACTTATCAGATTCTGAGAATCTCGAGATCCACTA
* *
49356743 ATTTATGATCACGACCTACTACTTACGTGATTTTA
1 ATTTATGATCACGACCTTCTACTTACGTGGTTTTA
49356778 CGAATCTAGA
Statistics
Matches: 118, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
108 114 0.97
109 4 0.03
ACGTcount: A:0.28, C:0.22, G:0.13, T:0.37
Consensus pattern (108 bp):
ATTTATGATCACGACCTTCTACTTACGTGGTTTTAAAAATATCACGGTCCACTAATTTACAATCA
CAACCTACTACTTATCAGATTCTGAGAATCTCGAGATCCACTA
Found at i:49356783 original size:54 final size:54
Alignment explanation
Indices: 49356502--49356784 Score: 232
Period size: 54 Copynumber: 5.2 Consensus size: 54
49356492 TACATCCGAA
* ** * * *
49356502 ATTTTACGAATCTTACGGTCCGTTGATTTATGATCACGACTTTCTACTTACGGG
1 ATTTTACGAATCTCACGGTCCACTAATTTATGATCACGACCTTCTACTTACGTG
* * * * * *
49356556 ATTTTACAAATATCACGGTCCGCTAATTTATGATCACAACCTACTATTTACAG-G
1 ATTTTACGAATCTCACGGTCCACTAATTTATGATCACGACCTTCTACTTAC-GTG
* * * *
49356610 ATTCTATGAATCTTGA-GATCCACTAATTTATGATCACGACCTTCTACTTACGTG
1 ATTTTACGAATC-TCACGGTCCACTAATTTATGATCACGACCTTCTACTTACGTG
* ** * * * ** * *
49356664 GTTTTAAAAATCTCACGGTCTATTCATTTACAATCACGACCTTTTACTTA-TTAG
1 ATTTTACGAATCTCACGGTCCACTAATTTATGATCACGACCTTCTACTTACGT-G
* * * *
49356718 TTTTTGA-GAATCTCGCGGTCCACTGATTTATGATCACGACCTACTACTTACGTG
1 ATTTT-ACGAATCTCACGGTCCACTAATTTATGATCACGACCTTCTACTTACGTG
49356772 ATTTTACGAATCT
1 ATTTTACGAATCT
49356785 AGACGTGTTG
Statistics
Matches: 177, Mismatches: 44, Indels: 16
0.75 0.19 0.07
Matches are distributed among these distances:
53 5 0.03
54 167 0.94
55 5 0.03
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.37
Consensus pattern (54 bp):
ATTTTACGAATCTCACGGTCCACTAATTTATGATCACGACCTTCTACTTACGTG
Found at i:49357935 original size:54 final size:53
Alignment explanation
Indices: 49357877--49358059 Score: 197
Period size: 54 Copynumber: 3.4 Consensus size: 53
49357867 TACGATAATG
* * * * *
49357877 ACCTTCTACTTAAGAGATTTTGCGAATCTCACGGTCTACTAATTTACAATGAGA
1 ACCTTCTACTTAAGAGATTTTACGAATCT-ACGGTCTACTGATTTACGATCACA
* *
49357931 ACCTTTTACTTATAG-GATTTTACGAATCTATCGGTCCACTGATTTACGATCACA
1 ACCTTCTACTTA-AGAGATTTTACGAATCTA-CGGTCTACTGATTTACGATCACA
* * * ** *
49357985 ACCTTCTACTTAAGGGATTTTATGGATCTTGTGGTCTGCTGATTTACGATCACA
1 ACCTTCTACTTAAGAGATTTTACGAATC-TACGGTCTACTGATTTACGATCACA
*
49358039 ACCTTCTACTTACGAGATTTT
1 ACCTTCTACTTAAGAGATTTT
49358060 GTAAATCTTG
Statistics
Matches: 109, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
53 3 0.03
54 103 0.94
55 3 0.03
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.37
Consensus pattern (53 bp):
ACCTTCTACTTAAGAGATTTTACGAATCTACGGTCTACTGATTTACGATCACA
Found at i:49358058 original size:108 final size:107
Alignment explanation
Indices: 49357808--49358059 Score: 245
Period size: 108 Copynumber: 2.3 Consensus size: 107
49357798 AAGCATGAGT
* * * *
49357808 TGATTTAAAATCACGACCTTCTACTTTCAGTATTTTACAAATCACATGGTCCGCTGACTTACGAT
1 TGATTTACAATCACAACCTTCTACTTACAG-ATTTTACAAATCACATGGTCCACTGACTTACGAT
** *
49357873 AATGACCTTCTACTTAAGAGATTTTGCGAATCTCACGGTCTAC
65 AACAACCTTCTACTTAAGAGATTTTACGAATCTCACGGTCTAC
* * * * * * * *
49357916 TAATTTACAATGAGAACCTTTTACTTATAGGATTTTACGAATC-TATCGGTCCACTGATTTACGA
1 TGATTTACAATCACAACCTTCTACTTACA-GATTTTACAAATCACAT-GGTCCACTGACTTACGA
* * * * *** *
49357980 TCACAACCTTCTACTTAAGGGATTTTATGGATCTTGTGGTCTGC
64 TAACAACCTTCTACTTAAGAGATTTTACGAATCTCACGGTCTAC
*
49358024 TGATTTACGATCACAACCTTCTACTTACGAGATTTT
1 TGATTTACAATCACAACCTTCTACTTAC-AGATTTT
49358060 GTAAATCTTG
Statistics
Matches: 112, Mismatches: 29, Indels: 6
0.76 0.20 0.04
Matches are distributed among these distances:
107 2 0.02
108 108 0.96
109 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.15, T:0.37
Consensus pattern (107 bp):
TGATTTACAATCACAACCTTCTACTTACAGATTTTACAAATCACATGGTCCACTGACTTACGATA
ACAACCTTCTACTTAAGAGATTTTACGAATCTCACGGTCTAC
Found at i:49358068 original size:54 final size:54
Alignment explanation
Indices: 49357969--49358088 Score: 168
Period size: 54 Copynumber: 2.2 Consensus size: 54
49357959 TATCGGTCCA
* ** **
49357969 CTGATTTACGATCACAACCTTCTACTTAAGGGATTTTATGGATCTTGTGGTCTG
1 CTGATTTACGATCACAACCTTCTACTTAAGAGATTTTATAAATCTTGCAGTCTG
* *
49358023 CTGATTTACGATCACAACCTTCTACTTACGAGATTTTGTAAATCTTGCAGTCTG
1 CTGATTTACGATCACAACCTTCTACTTAAGAGATTTTATAAATCTTGCAGTCTG
*
49358077 TTGATTTACGAT
1 CTGATTTACGAT
49358089 TACGACATTA
Statistics
Matches: 58, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 58 1.00
ACGTcount: A:0.24, C:0.19, G:0.17, T:0.39
Consensus pattern (54 bp):
CTGATTTACGATCACAACCTTCTACTTAAGAGATTTTATAAATCTTGCAGTCTG
Found at i:49358456 original size:54 final size:54
Alignment explanation
Indices: 49358366--49358517 Score: 198
Period size: 54 Copynumber: 2.8 Consensus size: 54
49358356 AAAGCTTCAA
* * * * **
49358366 TTGATTTACAATCACG-CATTTTACTTACGAGATTTTATGAATCTGACAGTCTT
1 TTGATTTACGATCACGACCTTTTACTTACGTGATTTTACGAATCTGACAGTCCG
* * *
49358419 TTGATTTACGATCACGACCTTCTACTTACGTGATTTTACGAATCTTACGGTCCG
1 TTGATTTACGATCACGACCTTTTACTTACGTGATTTTACGAATCTGACAGTCCG
* *
49358473 TTGATTTACGATCACAACCTTTTACTTATGTGATTTTACGAATCT
1 TTGATTTACGATCACGACCTTTTACTTACGTGATTTTACGAATCT
49358518 AGGCATGTTG
Statistics
Matches: 86, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
53 15 0.17
54 71 0.83
ACGTcount: A:0.26, C:0.20, G:0.14, T:0.41
Consensus pattern (54 bp):
TTGATTTACGATCACGACCTTTTACTTACGTGATTTTACGAATCTGACAGTCCG
Found at i:49358837 original size:397 final size:394
Alignment explanation
Indices: 49357970--49358914 Score: 1107
Period size: 397 Copynumber: 2.4 Consensus size: 394
49357960 ATCGGTCCAC
* * * * ** *
49357970 TGATTTACGATCACAACCTTCTACTTAAGGGATTTTATGGATCTTGTGGTCTGCTGATTTACGAT
1 TGATTTACAATCA-AACCTTTTACTTACGGGATTTTATGAATC-TGCAGTCTACTGATTTACGAT
* *** * * * * *
49358035 CACAACCTTCTACTTACGAGATTTTGTAAATCTTGCAGTCTGTTGATTTACGATTACGACATTAT
64 CACGACCTTCTACTTACGAGATTTTACGAATCTTGCGGTCCGTTGATTTACGATCACAACCTTAT
* * * * *
49358100 ACTTATATGATTTTACGGATCTAGACGAGTTGAGGAAGAACTTAAAATCGACCTCTTTGCCTTTA
129 ACTTATGTGATTTTACGAATCTAGACGAGTTGAGGAAGAACTCAAAATCGACCACTCTGCCTTTA
* * * * *
49358165 AAGCAAGTTAGATGCTAGAGATGATGAATATAAGGGTGTTGAGAATGAATTCAAAACTGACCATG
194 AAGCAAGTTAAATGCTAGAAATGATGAATATAAAGGTGTTGAGAATAAACTCAAAACTGACCATG
* * *
49358230 AAAGATGGATGATAGAGGAATTAATTTTGTTAAATTGCCTTTGTGATGCTGAAGCTAGTTTTCTT
259 AAAGA-GGAGGATAGAGGAATTAATTTTGTTAAATTACCTTTGTGATGCTGAAGCTAGTTCTCTT
* * *
49358295 CACCATAGGTCTGTAATAAGGCTTGAAATGGATCAATCTACTAAAAAAAGTAACTTTTTAAAAAG
323 CACCATACGTCTGAAATAAGGCTTGAAATGGATCAATCTACTAAAAAAAGTAACTCTTTAAAAAG
49358360 CTTCAAT
388 CTTCAAT
** * * **
49358367 TGATTTACAATCACGCATTTTACTTACGAGATTTTATGAATCTGACAGTCTTTTGATTTACGATC
1 TGATTTACAATCAAACCTTTTACTTACGGGATTTTATGAATCTG-CAGTCTACTGATTTACGATC
* * *
49358432 ACGACCTTCTACTTACGTGATTTTACGAATCTTACGGTCCGTTGATTTACGATCACAACCTTTTA
65 ACGACCTTCTACTTACGAGATTTTACGAATCTTGCGGTCCGTTGATTTACGATCACAACCTTATA
* *
49358497 CTTATGTGATTTTACGAATCTAGGC-ATGTTGAGGATGAACTCAAAA-CTGACCACTCTGCCTTT
130 CTTATGTGATTTTACGAATCTAGACGA-GTTGAGGAAGAACTCAAAATC-GACCACTCTGCCTTT
* *
49358560 CAGAA-CAAGTTAAATGCTAGAAATGATGACTATAAATGTGTTGAGGAA-AAACTCAAAACTGAC
193 -A-AAGCAAGTTAAATGCTAGAAATGATGAATATAAAGGTGTTGA-GAATAAACTCAAAACTGAC
* * * *
49358623 CTTGAAA-A-GAGGATAGCGGAATTAATTTTGTTATATTACCTTTGTGA-GGTAGAAGCTAGTTC
255 CATGAAAGAGGAGGATAGAGGAATTAATTTTGTTAAATTACCTTTGTGATGCT-GAAGCTAGTTC
* ** *
49358685 TCTTCACCATACGTCTGAAATGAGGCTTGAAATGGATTGATCTGCTCAAAAAAAAAG-AACTCTT
319 TCTTCACCATACGTCTGAAATAAGGCTTGAAATGGATCAATCTACT---AAAAAAAGTAACTCTT
* *
49358749 TCAAAAGCTTCAGT
381 TAAAAAGCTTCAAT
* *
49358763 TGATTTACAATCATTACCTTTTACTTACGGGATTTTATGAATCTAGCAGTCCACTGATTTACGAT
1 TGATTTACAATCA-AACCTTTTACTTACGGGATTTTATGAATCT-GCAGTCTACTGATTTACGAT
* ** * * *
49358828 CATGACCTTCTACTTACGAGATTTTACGAATCCCGTGGTCCGTTGATTTATGATCACAACCTTCT
64 CACGACCTTCTACTTACGAGATTTTACGAATCTTGCGGTCCGTTGATTTACGATCACAACCTTAT
*
49358893 ACTTATG-GTATTTTATGAATCT
129 ACTTATGTG-ATTTTACGAATCT
49358915 CGTGGTCCAC
Statistics
Matches: 465, Mismatches: 70, Indels: 26
0.83 0.12 0.05
Matches are distributed among these distances:
393 2 0.00
394 85 0.18
395 4 0.01
396 176 0.38
397 192 0.41
398 6 0.01
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (394 bp):
TGATTTACAATCAAACCTTTTACTTACGGGATTTTATGAATCTGCAGTCTACTGATTTACGATCA
CGACCTTCTACTTACGAGATTTTACGAATCTTGCGGTCCGTTGATTTACGATCACAACCTTATAC
TTATGTGATTTTACGAATCTAGACGAGTTGAGGAAGAACTCAAAATCGACCACTCTGCCTTTAAA
GCAAGTTAAATGCTAGAAATGATGAATATAAAGGTGTTGAGAATAAACTCAAAACTGACCATGAA
AGAGGAGGATAGAGGAATTAATTTTGTTAAATTACCTTTGTGATGCTGAAGCTAGTTCTCTTCAC
CATACGTCTGAAATAAGGCTTGAAATGGATCAATCTACTAAAAAAAGTAACTCTTTAAAAAGCTT
CAAT
Found at i:49358845 original size:54 final size:54
Alignment explanation
Indices: 49358763--49358970 Score: 218
Period size: 54 Copynumber: 3.9 Consensus size: 54
49358753 AAGCTTCAGT
* * * * **
49358763 TGATTTACAATCATTACCTTTTACTTACGGGATTTTATGAATCTAGCAGTCCAC
1 TGATTTACGATCATAACCTTCTACTTACGGGATTTTACGAATCTAGTGGTCCAC
* * ** **
49358817 TGATTTACGATCATGACCTTCTACTTACGAGATTTTACGAATCCCGTGGTCCGT
1 TGATTTACGATCATAACCTTCTACTTACGGGATTTTACGAATCTAGTGGTCCAC
* * * * * *
49358871 TGATTTATGATCACAACCTTCTACTTATGGTATTTTATGAATCTCGTGGTCCAC
1 TGATTTACGATCATAACCTTCTACTTACGGGATTTTACGAATCTAGTGGTCCAC
* * * *
49358925 TTATTTACGATCATAACCTTCTAATTCCAGGATTTTACGAATCTAG
1 TGATTTACGATCATAACCTTCTACTTACGGGATTTTACGAATCTAG
49358971 GCATGTTGAG
Statistics
Matches: 123, Mismatches: 31, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
54 123 1.00
ACGTcount: A:0.26, C:0.21, G:0.14, T:0.38
Consensus pattern (54 bp):
TGATTTACGATCATAACCTTCTACTTACGGGATTTTACGAATCTAGTGGTCCAC
Found at i:49359332 original size:54 final size:54
Alignment explanation
Indices: 49359249--49359371 Score: 131
Period size: 54 Copynumber: 2.3 Consensus size: 54
49359239 TACTTTTGGT
* * * * *
49359249 ATTTTACGAATCTCACGGTCCACTAATTTACGATGAAAATCTTCTACTTA-TGAG
1 ATTTTACGAATCTCGCAGTCCACTAATTTACAATGAAAACCTTCTACTTACAG-G
* * * * *
49359303 ATTTTACGAATCTCGCAGTCTATTGATTTACAATGAAGACCTTTTACTTACAGG
1 ATTTTACGAATCTCGCAGTCCACTAATTTACAATGAAAACCTTCTACTTACAGG
*
49359357 ATTTTAAGAATCTCG
1 ATTTTACGAATCTCG
49359372 TGGTCCTTTG
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
54 56 0.98
55 1 0.02
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.37
Consensus pattern (54 bp):
ATTTTACGAATCTCGCAGTCCACTAATTTACAATGAAAACCTTCTACTTACAGG
Found at i:49359415 original size:455 final size:450
Alignment explanation
Indices: 49358387--49359416 Score: 1128
Period size: 455 Copynumber: 2.3 Consensus size: 450
49358377 TCACGCATTT
* * *
49358387 TACTTACGAGATTTTATGAATCT-GACAGTCTTTTGATTTACGATCACGACCTTCTACTTACGTG
1 TACTTACGAGATTTTACGAATCTCG-CAGTCTATTGATTTACGATCAAGACCTTCTACTTACG-G
* *** * * * *
49358451 ATTTTACGAATCTTACGGTCCGTTGATTTACGATCACAACCTTTTACTTATGTGATTTTACGAAT
64 ATTTTAAGAATCTCGTGGTCCCTTGATTTACGATCACAACCTTCTAATTATGGGATTTTACGAAT
* * *
49358516 CTAGGCATGTTGAGGATGAACTCAAAACTGACCACTCTGCCTTTCAGAACAAGTTAAATGCTAGA
129 CTAGGCATGTTGAGGAAGAACTCAAAACTGACCACACTGCCCTTCAGAACAAGTTAAATGCTAGA
* * * * * * * * *
49358581 AATGATGACTATAAATGTGTTGAGGAAAAACTCAAAACTGACCTTGAAAAGAGGATAGCGGAATT
194 AATGAAGAATATAAACGTATTAAGGAAAAACTCAAAACTAACCATGAAAAGAGGATAGAGGAATC
* * *
49358646 AATTTTGTTATATTACCTTTGTGAGGTAGAAGCTAGTTCTCTTCACCATACGTCTGAAATGAGGC
259 AATTTTGTAACATTACCTTTGTGAGGTAGAAGCTAGTTCTCTTCACCATACGTCTGAAATAAGGC
* * * * * *
49358711 TTGAAATGGATTGATCTGCTCAAAAAAAAAGAACTCTTTCAAAAGCTTCAGTTGATTTACAATCA
324 TTGAAATGGATCGACCTGCTCAAAAAAAAAGAACTCTCTCAAAAGCATCAATTAATTTACAATCA
** * * * **
49358776 TTACCTTTTACTTACGGGATTTTATGAATCTAGCAGTCCACTGATTTACGATCATGACCTTC
389 CGACCTATTACTTACGGGATTTTACGAATCTAGCAGTCCACTAATTTACGATCAAAACCTTC
* ** ** * *
49358838 TACTTACGAGATTTTACGAATCCCGTGGTCCGTTGATTTATGATCACA-ACCTTCTACTTATGGT
1 TACTTACGAGATTTTACGAATCTCGCAGTCTATTGATTTACGATCA-AGACCTTCTACTTACGG-
* * ***
49358902 ATTTTATGAATCTCGTGGTCCACTT-ATTTACGATCATAACCTTCTAATTCCAGGATTTTACGAA
64 ATTTTAAGAATCTCGTGGTCC-CTTGATTTACGATCACAACCTTCTAATTATGGGATTTTACGAA
* *
49358966 TCTAGGCATGTTGAGGAAGAACTCAAAACTGACCAGACTGCCCTTCA-AAGCAAGTT-GATGCTA
128 TCTAGGCATGTTGAGGAAGAACTCAAAACTGACCACACTGCCCTTCAGAA-CAAGTTAAATGCTA
* * ** *
49359029 GAGATTAAGAATATAGGCGTATTAAGGAAGAACTCAAAACTAACCATGAAAGAAGGAGGATAGAG
192 GAAATGAAGAATATAAACGTATTAAGGAAAAACTCAAAACTAACCATG-AA-AA-GAGGATAGAG
* * *
49359094 GAATCAATTTTGTAACATTGCCTTTTTGAGGCTA-AAGCTAGTTCTCTTGACCATACGTCTGAAA
254 GAATCAATTTTGTAACATTACCTTTGTGAGG-TAGAAGCTAGTTCTCTTCACCATACGTCTGAAA
* *
49359158 TAAGGCTTGAAATGGATCGACCTAG-TTAATAAAACAAGAGACT-TCT-AGAATAGCATCAATTA
318 TAAGGCTTGAAATGGATCGACCT-GCTCAA-AAAAAAAGA-ACTCTCTCA-AA-AGCATCAATTA
* ** * * *
49359220 ATTTACTATCACGACCTATTACTTTTGGTATTTTACGAATCTCA-CGGTCCACTAATTTACGATG
378 ATTTACAATCACGACCTATTACTTACGGGATTTTACGAATCT-AGCAGTCCACTAATTTACGATC
*
49359284 AAAATCTTC
442 AAAACCTTC
* * * *
49359293 TACTTATGAGATTTTACGAATCTCGCAGTCTATTGATTTACAATGAAGACCTTTTACTTACAGGA
1 TACTTACGAGATTTTACGAATCTCGCAGTCTATTGATTTACGATCAAGACCTTCTACTTAC-GGA
* * *
49359358 TTTTAAGAATCTCGTGGTCCTTTGAATTACGATCACAA-CTGTCTATTTATGGGATTTTA
65 TTTTAAGAATCTCGTGGTCCCTTGATTTACGATCACAACCT-TCTAATTATGGGATTTTA
49359417 TGGATCTTGC
Statistics
Matches: 473, Mismatches: 87, Indels: 34
0.80 0.15 0.06
Matches are distributed among these distances:
450 45 0.10
451 150 0.32
452 5 0.01
453 88 0.19
454 20 0.04
455 162 0.34
456 3 0.01
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Consensus pattern (450 bp):
TACTTACGAGATTTTACGAATCTCGCAGTCTATTGATTTACGATCAAGACCTTCTACTTACGGAT
TTTAAGAATCTCGTGGTCCCTTGATTTACGATCACAACCTTCTAATTATGGGATTTTACGAATCT
AGGCATGTTGAGGAAGAACTCAAAACTGACCACACTGCCCTTCAGAACAAGTTAAATGCTAGAAA
TGAAGAATATAAACGTATTAAGGAAAAACTCAAAACTAACCATGAAAAGAGGATAGAGGAATCAA
TTTTGTAACATTACCTTTGTGAGGTAGAAGCTAGTTCTCTTCACCATACGTCTGAAATAAGGCTT
GAAATGGATCGACCTGCTCAAAAAAAAAGAACTCTCTCAAAAGCATCAATTAATTTACAATCACG
ACCTATTACTTACGGGATTTTACGAATCTAGCAGTCCACTAATTTACGATCAAAACCTTC
Found at i:49360268 original size:54 final size:53
Alignment explanation
Indices: 49360203--49360532 Score: 193
Period size: 54 Copynumber: 6.1 Consensus size: 53
49360193 CACAACCTAT
* * *
49360203 TACTTACAGGATTTTACGAATCTCAATATCTGCTGATTTACGATGACGACCTTC
1 TACTTACAGGATTTTACGAATCTC-ATATCCGCTAATTTACGATCACGACCTTC
* * * * * * *
49360257 TACTTATAGGATTTTACGAATCTTGCA-ATCTGTTGATTTACGATTATGACCATC
1 TACTTACAGGATTTTACGAATC-T-CATATCCGCTAATTTACGATCACGACCTTC
*** * * * * ** *
49360311 TA-TTTTTGAAATTTTATGGATCT-AGTGGTCCGCTAATTTAATATCACAACCTTC
1 TACTTACAG-GATTTTACGAATCTCA-T-ATCCGCTAATTTACGATCACGACCTTC
* ** ** * *
49360365 TACTTACGGGATTTTACGAATCTCGCGATTTGTTAATTTGCGATCACGACCTTC
1 TACTTACAGGATTTTACGAATCTC-ATATCCGCTAATTTACGATCACGACCTTC
* * * * *
49360419 TACTTA-AGGGATTTTACAAATCTCGTGGTCCGCTGATTTACGATCACAACCTTC
1 TACTTACA-GGATTTTACGAATCTCAT-ATCCGCTAATTTACGATCACGACCTTC
* * * * *
49360473 TACTTACGGGATTTTATGAATCTCGCA-ATCCACTAATTTACGATCATGACCTTT
1 TACTTACAGGATTTTACGAATCT--CATATCCGCTAATTTACGATCACGACCTTC
49360527 TACTTA
1 TACTTA
49360533 TGAGATTTTA
Statistics
Matches: 205, Mismatches: 57, Indels: 28
0.71 0.20 0.10
Matches are distributed among these distances:
51 1 0.00
53 5 0.02
54 192 0.94
55 5 0.02
56 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.38
Consensus pattern (53 bp):
TACTTACAGGATTTTACGAATCTCATATCCGCTAATTTACGATCACGACCTTC
Found at i:49360369 original size:108 final size:108
Alignment explanation
Indices: 49360251--49360548 Score: 317
Period size: 108 Copynumber: 2.8 Consensus size: 108
49360241 TACGATGACG
** * * * * *
49360251 ACCTTCTACTTATAGGATTTTACGAATCTTGCAATCTGTTGATTTACGATTATGACCATCTATTT
1 ACCTTCTACTTACGGGATTTTACGAATCTCGCAATCTGTTAATTTACGATCACGACCATCTACTT
** *** *
49360316 TTGAAATTTTATGGATCTAGTGGTCCGCTAATTTAATATCACA
66 AAGAAATTTTACAAATCTAGTGGTCCGCTAATTTAAGATCACA
* * * *
49360359 ACCTTCTACTTACGGGATTTTACGAATCTCGCGATTTGTTAATTTGCGATCACGACCTTCTACTT
1 ACCTTCTACTTACGGGATTTTACGAATCTCGCAATCTGTTAATTTACGATCACGACCATCTACTT
** * * *
49360424 AAGGGATTTTACAAATCTCGTGGTCCGCTGATTTACGATCACA
66 AAGAAATTTTACAAATCTAGTGGTCCGCTAATTTAAGATCACA
* *** * * *
49360467 ACCTTCTACTTACGGGATTTTATGAATCTCGCAATCCACTAATTTACGATCATGACCTTTTACTT
1 ACCTTCTACTTACGGGATTTTACGAATCTCGCAATCTGTTAATTTACGATCACGACCATCTACTT
* *
49360532 ATGAGATTTTACAAATC
66 AAGAAATTTTACAAATC
49360549 ACACGATTTA
Statistics
Matches: 157, Mismatches: 33, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
108 157 1.00
ACGTcount: A:0.27, C:0.20, G:0.14, T:0.38
Consensus pattern (108 bp):
ACCTTCTACTTACGGGATTTTACGAATCTCGCAATCTGTTAATTTACGATCACGACCATCTACTT
AAGAAATTTTACAAATCTAGTGGTCCGCTAATTTAAGATCACA
Found at i:49360540 original size:54 final size:54
Alignment explanation
Indices: 49360343--49360548 Score: 196
Period size: 54 Copynumber: 3.8 Consensus size: 54
49360333 TAGTGGTCCG
** * * * * ***
49360343 CTAATTTAATATCACAACCTTCTACTTACGGGATTTTACGAATCTCGCGATTTG
1 CTAATTTACGATCACGACCTTCTACTTAAGGGATTTTACAAATCTCGCAATCCA
* * *** *
49360397 TTAATTTGCGATCACGACCTTCTACTTAAGGGATTTTACAAATCTCGTGGTCCG
1 CTAATTTACGATCACGACCTTCTACTTAAGGGATTTTACAAATCTCGCAATCCA
* * * **
49360451 CTGATTTACGATCACAACCTTCTACTTACGGGATTTTATGAATCTCGCAATCCA
1 CTAATTTACGATCACGACCTTCTACTTAAGGGATTTTACAAATCTCGCAATCCA
* * * *
49360505 CTAATTTACGATCATGACCTTTTACTTATGAGATTTTACAAATC
1 CTAATTTACGATCACGACCTTCTACTTAAGGGATTTTACAAATC
49360549 ACACGATTTA
Statistics
Matches: 122, Mismatches: 30, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
54 122 1.00
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.36
Consensus pattern (54 bp):
CTAATTTACGATCACGACCTTCTACTTAAGGGATTTTACAAATCTCGCAATCCA
Found at i:49360564 original size:108 final size:108
Alignment explanation
Indices: 49360353--49360603 Score: 270
Period size: 108 Copynumber: 2.3 Consensus size: 108
49360343 CTAATTTAAT
* **** *
49360353 ATCACAACCTTCTACTTACGGGATTTTACGAATCTCGCGATTTGTTAATTTGCGATCACGACCTT
1 ATCACAACCTTCTACTTACGGGATTTTACGAATCTCGCAATCCACTAATTTACGATCACGACCTT
* * ** * * *
49360418 CTACTTAAGGGATTTTACAAATCTCGTGGTCCGCTGATTTACG
66 CTACTTAAGAGATTTTACAAATCACACGATCCACTGATTCACG
* *
49360461 ATCACAACCTTCTACTTACGGGATTTTATGAATCTCGCAATCCACTAATTTACGATCATGACCTT
1 ATCACAACCTTCTACTTACGGGATTTTACGAATCTCGCAATCCACTAATTTACGATCACGACCTT
* * ** *
49360526 TTACTTATGAGATTTTACAAATCACACGATTTATTGATTCACG
66 CTACTTAAGAGATTTTACAAATCACACGATCCACTGATTCACG
** **
49360569 ATCATGACCTTCTA-TTGACTTGATTTTACGAATCT
1 ATCACAACCTTCTACTT-ACGGGATTTTACGAATCT
49360604 AAGCGTGTTC
Statistics
Matches: 117, Mismatches: 25, Indels: 2
0.81 0.17 0.01
Matches are distributed among these distances:
107 2 0.02
108 115 0.98
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.37
Consensus pattern (108 bp):
ATCACAACCTTCTACTTACGGGATTTTACGAATCTCGCAATCCACTAATTTACGATCACGACCTT
CTACTTAAGAGATTTTACAAATCACACGATCCACTGATTCACG
Found at i:49360918 original size:54 final size:55
Alignment explanation
Indices: 49360836--49361221 Score: 203
Period size: 54 Copynumber: 7.1 Consensus size: 55
49360826 AAAGAGTTTT
* ** * * *
49360836 ACCTTTTACTTACGGGATTTTACGAATCTCGA-AGTTTGCTAACTTATGATGATG
1 ACCTTCTACTTACGGGATTTTACGAATCTCGACAGTCCGCTAACTTACGATCACG
* *
49360890 ACCTTCTACTTACGGGATTTTACGAATCTC-ACAGTCCGCTGATTTACGATCACG
1 ACCTTCTACTTACGGGATTTTACGAATCTCGACAGTCCGCTAACTTACGATCACG
* * ** * * * *
49360944 ACCTTCTACTTATGGGATTTTACAAATCTCG-TGGTCCACTGATTTACGATCACA
1 ACCTTCTACTTACGGGATTTTACGAATCTCGACAGTCCGCTAACTTACGATCACG
* ** * ** * * * *
49360998 ACCTTCTAGTTATAGGATTTTACGAATCTC-ACGGTCTACTGATTTACAATCATG
1 ACCTTCTACTTACGGGATTTTACGAATCTCGACAGTCCGCTAACTTACGATCACG
* ** * ** * * * *
49361052 ACCTTCTACTTAAGAAATTTTACAAATCTC-ATGGTCCGTTAATTTATGATCATG
1 ACCTTCTACTTACGGGATTTTACGAATCTCGACAGTCCGCTAACTTACGATCACG
* * * * * ** * * * *
49361106 TCCTTTTACTTATGGGATTTTACAAATCTAG-CTA-TCCATTGATTTACAATCATG
1 ACCTTCTACTTACGGGATTTTACGAATCTCGAC-AGTCCGCTAACTTACGATCACG
* ** ** ** * *
49361160 ACATTCTACTTATAGGATTTTACGAATCTCG-TGGTCCATTGATTTACGATCACG
1 ACCTTCTACTTACGGGATTTTACGAATCTCGACAGTCCGCTAACTTACGATCACG
49361214 ACCTTCTA
1 ACCTTCTA
49361222 TTGACGTAAT
Statistics
Matches: 268, Mismatches: 58, Indels: 12
0.79 0.17 0.04
Matches are distributed among these distances:
53 1 0.00
54 267 1.00
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.37
Consensus pattern (55 bp):
ACCTTCTACTTACGGGATTTTACGAATCTCGACAGTCCGCTAACTTACGATCACG
Found at i:49361025 original size:108 final size:108
Alignment explanation
Indices: 49360889--49361221 Score: 409
Period size: 108 Copynumber: 3.1 Consensus size: 108
49360879 TTATGATGAT
* * * *
49360889 GACCTTCTACTTACGGGATTTTACGAATCTCACAGTCCGCTGATTTACGATCACGACCTTCTACT
1 GACCTTCTACTTATGGGATTTTACGAATCTCACAGTCCACTGATTTACAATCATGACCTTCTACT
*
49360954 TATGGGATTTTACAAATCTCGTGGTCCACTGATTTACGATCAC
66 TATGGGATTTTACAAATCTCGTGGTCCATTGATTTACGATCAC
* * * * *
49360997 AACCTTCTAGTTATAGGATTTTACGAATCTCACGGTCTACTGATTTACAATCATGACCTTCTACT
1 GACCTTCTACTTATGGGATTTTACGAATCTCACAGTCCACTGATTTACAATCATGACCTTCTACT
* ** * * * * *
49361062 TAAGAAATTTTACAAATCTCATGGTCCGTTAATTTATGATCAT
66 TATGGGATTTTACAAATCTCGTGGTCCATTGATTTACGATCAC
* * * * *
49361105 GTCCTTTTACTTATGGGATTTTACAAATCT-AGCTA-TCCATTGATTTACAATCATGACATTCTA
1 GACCTTCTACTTATGGGATTTTACGAATCTCA-C-AGTCCACTGATTTACAATCATGACCTTCTA
* *
49361168 CTTATAGGATTTTACGAATCTCGTGGTCCATTGATTTACGATCAC
64 CTTATGGGATTTTACAAATCTCGTGGTCCATTGATTTACGATCAC
49361213 GACCTTCTA
1 GACCTTCTA
49361222 TTGACGTAAT
Statistics
Matches: 183, Mismatches: 40, Indels: 4
0.81 0.18 0.02
Matches are distributed among these distances:
107 1 0.01
108 182 0.99
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.37
Consensus pattern (108 bp):
GACCTTCTACTTATGGGATTTTACGAATCTCACAGTCCACTGATTTACAATCATGACCTTCTACT
TATGGGATTTTACAAATCTCGTGGTCCATTGATTTACGATCAC
Found at i:49361118 original size:162 final size:162
Alignment explanation
Indices: 49360887--49361221 Score: 420
Period size: 162 Copynumber: 2.1 Consensus size: 162
49360877 ACTTATGATG
* ** * *
49360887 ATGACCTTCTACTTACGGGATTTTACGAATCTCACAGTCCGCTGATTTACGATCACGACCTTCTA
1 ATGACCTTCTACTTAAGAAATTTTACAAATCTCACAGTCCGCTAATTTACGATCACGACCTTCTA
* * * * *
49360952 CTTATGGGATTTTACAAATCTCG-TGGTCCACTGATTTACGATCACAACCTTCTAGTTATAGGAT
66 CTTATGGGATTTTACAAATCTAGCT-ATCCACTGATTTACAATCACAACATTCTACTTATAGGAT
*
49361016 TTTACGAATCTCACGGTCTACTGATTTACAATC
130 TTTACGAATCTCACGGTCCACTGATTTACAATC
** * * * * *
49361049 ATGACCTTCTACTTAAGAAATTTTACAAATCTCATGGTCCGTTAATTTATGATCATGTCCTTTTA
1 ATGACCTTCTACTTAAGAAATTTTACAAATCTCACAGTCCGCTAATTTACGATCACGACCTTCTA
* **
49361114 CTTATGGGATTTTACAAATCTAGCTATCCATTGATTTACAATCATGACATTCTACTTATAGGATT
66 CTTATGGGATTTTACAAATCTAGCTATCCACTGATTTACAATCACAACATTCTACTTATAGGATT
** * *
49361179 TTACGAATCTCGTGGTCCATTGATTTACGATC
131 TTACGAATCTCACGGTCCACTGATTTACAATC
*
49361211 ACGACCTTCTA
1 ATGACCTTCTA
49361222 TTGACGTAAT
Statistics
Matches: 146, Mismatches: 26, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
162 145 0.99
163 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.37
Consensus pattern (162 bp):
ATGACCTTCTACTTAAGAAATTTTACAAATCTCACAGTCCGCTAATTTACGATCACGACCTTCTA
CTTATGGGATTTTACAAATCTAGCTATCCACTGATTTACAATCACAACATTCTACTTATAGGATT
TTACGAATCTCACGGTCCACTGATTTACAATC
Found at i:49361242 original size:54 final size:53
Alignment explanation
Indices: 49360929--49361242 Score: 249
Period size: 54 Copynumber: 5.8 Consensus size: 53
49360919 CACAGTCCGC
** *
49360929 TGATTTACGATCACGACCTTCTACTTATGGGATTTTACAAATCTCGTGGTCCAC
1 TGATTTACGATCACGACCTTCTACTTA-GTAATTTTACAAATCTCGTGGTCCAT
* * * ** * *
49360983 TGATTTACGATCACAACCTTCTAGTTA-TAGGATTTTACGAATCTCACGGTCTAC
1 TGATTTACGATCACGACCTTCTACTTAGTA--ATTTTACAAATCTCGTGGTCCAT
* * * * *
49361037 TGATTTACAATCATGACCTTCTACTTAAGAAATTTTACAAATCTCATGGTCCGT
1 TGATTTACGATCACGACCTTCTACTT-AGTAATTTTACAAATCTCGTGGTCCAT
* * * * * ** * *
49361091 TAATTTATGATCATGTCCTTTTACTTATGGGATTTTACAAATCTAGCT-ATCCAT
1 TGATTTACGATCACGACCTTCTACTTA-GTAATTTTACAAATCTCG-TGGTCCAT
* * * *
49361145 TGATTTACAATCATGACATTCTACTTA-TAGGATTTTACGAATCTCGTGGTCCAT
1 TGATTTACGATCACGACCTTCTACTTAGTA--ATTTTACAAATCTCGTGGTCCAT
*
49361199 TGATTTACGATCACGACCTTCTA-TTGACGTAATTATACAAATCT
1 TGATTTACGATCACGACCTTCTACTT-A-GTAATTTTACAAATCT
49361243 AGGCATGTTG
Statistics
Matches: 203, Mismatches: 45, Indels: 24
0.75 0.17 0.09
Matches are distributed among these distances:
53 4 0.02
54 194 0.96
55 2 0.01
56 3 0.01
ACGTcount: A:0.28, C:0.20, G:0.13, T:0.38
Consensus pattern (53 bp):
TGATTTACGATCACGACCTTCTACTTAGTAATTTTACAAATCTCGTGGTCCAT
Found at i:49361931 original size:456 final size:453
Alignment explanation
Indices: 49361163--49361995 Score: 1218
Period size: 453 Copynumber: 1.8 Consensus size: 453
49361153 AATCATGACA
* * * * *
49361163 TTCTACTTATAGGATTTTACGAATCTCGTGGTCCATTGATTTACGATCACGACCTTCTATTGACG
1 TTCTACTTATAGGATTTTACGAATCTCGTAGTCCACTAATTTACAATCACGACCTTCTACTGACG
** * ** *
49361228 TAATTATACAAATCTAGGCATGTTGAAGAAGAACTAAAAACTGACCTCTCTGCTTTTCAGAGCAA
66 TAATTATACAAATCTAAACATGTCGAAGAAGAACTAAAAACTGACCTCTCTGCCCTTCAAAGCAA
* * * *
49361293 GTTAGATGCTAGAGATGATTAATATAGGCGTGTTGAGGAAGAACTCAAAACTGACCTTAAAAGGA
131 GTTAGATGCTAGAGATGATTAATATAGGCATGTTAAGGAAGAACTCAAAACTAACCTTAAAAGAA
* * * **
49361358 GATTAGAGGAATTAAATTTGCTACCTTGCCTTTGTGAGGCTGAAGCTAGTTCTCTTCACCATATG
196 GATTAGAGGAATCAAATTTGCTACATTGCCTTTGTAAGGCTGAAGCTAGTTCTCTTCACCATACA
* *
49361423 TCTGAAATGAGGCTTGAAATGGATTGATTTGCACAGAAAAACAAGAAACTTTCTAAAAAGCTTTA
261 TCTAAAATGAGGCTTGAAATGGATCGATTTGCACAGAAAAACAAGAAACTTTCTAAAAAGCTTTA
*
49361488 GTTGATTTACAATCACTACCTTTTACTTACGAAATATTACGAATCTCGAGGTCTACGGAATTACG
326 GTTGATTTACAATCACGACCTTTTACTTACGAAATATTACGAATCTCGAGGTCTACGGAATTACG
49361553 ATCACGGCCTTCTACTTACCGTATTTTATGAATCTCGTGGTCCATTAATTTATGATCACAACC
391 ATCACGGCCTTCTACTTACCGTATTTTATGAATCTCGTGGTCCATTAATTTATGATCACAACC
* * * *
49361616 TTCTACTTATGGGATTTTACGAATCTCGTAGTCCGCTAATTTACAATCATGACGTTCTACTGACG
1 TTCTACTTATAGGATTTTACGAATCTCGTAGTCCACTAATTTACAATCACGACCTTCTACTGACG
* * * * * *
49361681 TGATTCTACGAATTTAAACATGTCGATGAAGAATTAAAAACTGACCTCTCTGCCCTTCAAAGCAA
66 TAATTATACAAATCTAAACATGTCGAAGAAGAACTAAAAACTGACCTCTCTGCCCTTCAAAGCAA
*
49361746 GTTAGATGCTAGAGATGATTAATATAGGCATGTTAAGGAAGAACTTAAAACTAACCTTGAAAGAT
131 GTTAGATGCTAGAGATGATTAATATAGGCATGTTAAGGAAGAACTCAAAACTAACCTT-AAA-A-
* *
49361811 TGAAGA-TAGAGGAATCAAATTTGTTACATTGCCTTTGTAAGGCTGAAGCTAGTTCTTTTCACCA
193 -GAAGATTAGAGGAATCAAATTTGCTACATTGCCTTTGTAAGGCTGAAGCTAGTTCTCTTCACCA
* * *
49361875 TACATCTAAAATGAGGCTTGAAATGGATCGATTTGCTCAGAAAAACAAGGAACTTTCTTAAAAGC
257 TACATCTAAAATGAGGCTTGAAATGGATCGATTTGCACAGAAAAACAAGAAACTTTCTAAAAAGC
* * *** *
49361940 TTTGGTTGATTTACAATCACGAGCTTTTACTTACGGGTTATTATGAATCTCGAGGT
322 TTTAGTTGATTTACAATCACGACCTTTTACTTACGAAATATTACGAATCTCGAGGT
49361996 TTGTTGATTT
Statistics
Matches: 331, Mismatches: 45, Indels: 5
0.87 0.12 0.01
Matches are distributed among these distances:
453 163 0.49
454 3 0.01
455 1 0.00
456 160 0.48
457 4 0.01
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.32
Consensus pattern (453 bp):
TTCTACTTATAGGATTTTACGAATCTCGTAGTCCACTAATTTACAATCACGACCTTCTACTGACG
TAATTATACAAATCTAAACATGTCGAAGAAGAACTAAAAACTGACCTCTCTGCCCTTCAAAGCAA
GTTAGATGCTAGAGATGATTAATATAGGCATGTTAAGGAAGAACTCAAAACTAACCTTAAAAGAA
GATTAGAGGAATCAAATTTGCTACATTGCCTTTGTAAGGCTGAAGCTAGTTCTCTTCACCATACA
TCTAAAATGAGGCTTGAAATGGATCGATTTGCACAGAAAAACAAGAAACTTTCTAAAAAGCTTTA
GTTGATTTACAATCACGACCTTTTACTTACGAAATATTACGAATCTCGAGGTCTACGGAATTACG
ATCACGGCCTTCTACTTACCGTATTTTATGAATCTCGTGGTCCATTAATTTATGATCACAACC
Found at i:49362024 original size:456 final size:453
Alignment explanation
Indices: 49361163--49362043 Score: 1206
Period size: 456 Copynumber: 1.9 Consensus size: 453
49361153 AATCATGACA
* * * * *
49361163 TTCTACTTATAGGATTTTACGAATCTCGTGGTCCATTGATTTACGATCACGACCTTCTATTGACG
1 TTCTACTTATAGGATTTTACGAATCTCGTAGTCCACTAATTTACAATCACGACCTTCTACTGACG
** * ** *
49361228 TAATTATACAAATCTAGGCATGTTGAAGAAGAACTAAAAACTGACCTCTCTGCTTTTCAGAGCAA
66 TAATTATACAAATCTAAACATGTCGAAGAAGAACTAAAAACTGACCTCTCTGCCCTTCAAAGCAA
* * * *
49361293 GTTAGATGCTAGAGATGATTAATATAGGCGTGTTGAGGAAGAACTCAAAACTGACCTTAAAAGGA
131 GTTAGATGCTAGAGATGATTAATATAGGCATGTTAAGGAAGAACTCAAAACTAACCTTAAAAGAA
* * * **
49361358 GATTAGAGGAATTAAATTTGCTACCTTGCCTTTGTGAGGCTGAAGCTAGTTCTCTTCACCATATG
196 GATTAGAGGAATCAAATTTGCTACATTGCCTTTGTAAGGCTGAAGCTAGTTCTCTTCACCATACA
* *
49361423 TCTGAAATGAGGCTTGAAATGGATTGATTTGCACAGAAAAACAAGAAACTTTCTAAAAAGCTTTA
261 TCTAAAATGAGGCTTGAAATGGATCGATTTGCACAGAAAAACAAGAAACTTTCTAAAAAGCTTTA
*
49361488 GTTGATTTACAATCACTACCTTTTACTTACGAAATATTACGAATCTCGAGGTCTACGGAATTACG
326 GTTGATTTACAATCACGACCTTTTACTTACGAAATATTACGAATCTCGAGGTCTACGGAATTACG
* * *
49361553 ATCACGGCCTTCTACTTACCGTATTTTATGAATCTCGTGGTCCATTAATTTATGATCACAACC
391 ATCACGACCTTCTACTTACCGGATTTTACGAATCTCGTGGTCCATTAATTTATGATCACAACC
* * * *
49361616 TTCTACTTATGGGATTTTACGAATCTCGTAGTCCGCTAATTTACAATCATGACGTTCTACTGACG
1 TTCTACTTATAGGATTTTACGAATCTCGTAGTCCACTAATTTACAATCACGACCTTCTACTGACG
* * * * * *
49361681 TGATTCTACGAATTTAAACATGTCGATGAAGAATTAAAAACTGACCTCTCTGCCCTTCAAAGCAA
66 TAATTATACAAATCTAAACATGTCGAAGAAGAACTAAAAACTGACCTCTCTGCCCTTCAAAGCAA
*
49361746 GTTAGATGCTAGAGATGATTAATATAGGCATGTTAAGGAAGAACTTAAAACTAACCTTGAAAGAT
131 GTTAGATGCTAGAGATGATTAATATAGGCATGTTAAGGAAGAACTCAAAACTAACCTT-AAA-A-
* *
49361811 TGAAGA-TAGAGGAATCAAATTTGTTACATTGCCTTTGTAAGGCTGAAGCTAGTTCTTTTCACCA
193 -GAAGATTAGAGGAATCAAATTTGCTACATTGCCTTTGTAAGGCTGAAGCTAGTTCTCTTCACCA
* * *
49361875 TACATCTAAAATGAGGCTTGAAATGGATCGATTTGCTCAGAAAAACAAGGAACTTTCTTAAAAGC
257 TACATCTAAAATGAGGCTTGAAATGGATCGATTTGCACAGAAAAACAAGAAACTTTCTAAAAAGC
* * *** * * *** *
49361940 TTTGGTTGATTTACAATCACGAGCTTTTACTTACGGGTTATTATGAATCTCGAGGTTTGTTGATT
322 TTTAGTTGATTTACAATCACGACCTTTTACTTACGAAATATTACGAATCTCGAGGTCTACGGAAT
* * * *
49362005 TACGATGACTACTTTCTACTTACGGGATTTTACGAATCT
387 TACGATCACGACCTTCTACTTACCGGATTTTACGAATCT
49362044 TGCAATTCGG
Statistics
Matches: 367, Mismatches: 57, Indels: 5
0.86 0.13 0.01
Matches are distributed among these distances:
453 163 0.44
454 3 0.01
455 1 0.00
456 196 0.53
457 4 0.01
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (453 bp):
TTCTACTTATAGGATTTTACGAATCTCGTAGTCCACTAATTTACAATCACGACCTTCTACTGACG
TAATTATACAAATCTAAACATGTCGAAGAAGAACTAAAAACTGACCTCTCTGCCCTTCAAAGCAA
GTTAGATGCTAGAGATGATTAATATAGGCATGTTAAGGAAGAACTCAAAACTAACCTTAAAAGAA
GATTAGAGGAATCAAATTTGCTACATTGCCTTTGTAAGGCTGAAGCTAGTTCTCTTCACCATACA
TCTAAAATGAGGCTTGAAATGGATCGATTTGCACAGAAAAACAAGAAACTTTCTAAAAAGCTTTA
GTTGATTTACAATCACGACCTTTTACTTACGAAATATTACGAATCTCGAGGTCTACGGAATTACG
ATCACGACCTTCTACTTACCGGATTTTACGAATCTCGTGGTCCATTAATTTATGATCACAACC
Found at i:49362026 original size:54 final size:54
Alignment explanation
Indices: 49361944--49362151 Score: 186
Period size: 54 Copynumber: 3.9 Consensus size: 54
49361934 AAAAGCTTTG
* * * *
49361944 GTTGATTTACAATCACGAGCTTTTACTTACGGG-TTATTATGAATCTCGAGGTTT
1 GTTGATTTACGATCACGACCTTCTACTTACGGGATT-TTACGAATCTCGAGGTTT
* * * * * *
49361998 GTTGATTTACGATGACTACTTTCTACTTACGGGATTTTACGAATCTTGCA-ATTC
1 GTTGATTTACGATCACGACCTTCTACTTACGGGATTTTACGAATCTCG-AGGTTT
* * * * * **
49362052 GGTGATTTACGATGACGACCATCTATTTACGGGATTTTACGAATCTCGTGGCCT
1 GTTGATTTACGATCACGACCTTCTACTTACGGGATTTTACGAATCTCGAGGTTT
* * * * *
49362106 GCTGATTTACGATCACAACCTTCTACTTATGGGATTTAACAAATCT
1 GTTGATTTACGATCACGACCTTCTACTTACGGGATTTTACGAATCT
49362152 TATGGTGAAC
Statistics
Matches: 122, Mismatches: 29, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
54 119 0.98
55 3 0.02
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.38
Consensus pattern (54 bp):
GTTGATTTACGATCACGACCTTCTACTTACGGGATTTTACGAATCTCGAGGTTT
Found at i:49362088 original size:456 final size:453
Alignment explanation
Indices: 49361037--49362132 Score: 1196
Period size: 456 Copynumber: 2.4 Consensus size: 453
49361027 CACGGTCTAC
* * * * * * *
49361037 TGATTTACAATCATGACCTTCTACTTAAGAAATTTTACAAATCTC-ATGGTC--CGTTAATTTAT
1 TGATTTACAATCACGACCTTTTACTTACGAAATATTACGAATCTCGA-GGTCTACG-GAA-TTAC
* * * ** * * * * * * **
49361099 GATCATGTCCTTTTACTTATGGGATTTTACAAATCTAGCTATCCATTGATTTACAATCATGA-CA
63 GATCACGACCTTCTACTTACCGGATTTTACGAATCTCGCAATCCAGTAATTTACGATCACAACCA
** * * * * *
49361163 TTCTACTTATAGGATTTTACGAATCTCGTGGTCCATTGATTTACGATCACGACCTTCTATTGACG
128 -TCTACTTACGGGATTTTACGAATCTCGTAGTCCACTAATTTACAATCACGACCTTCTACTGACG
** * ** *
49361228 TAATTATACAAATCTAGGCATGTTGAAGAAGAACTAAAAACTGACCTCTCTGCTTTTCAGAGCAA
192 TAATTATACAAATCTAAACATGTCGAAGAAGAACTAAAAACTGACCTCTCTGCCCTTCAAAGCAA
* * * *
49361293 GTTAGATGCTAGAGATGATTAATATAGGCGTGTTGAGGAAGAACTCAAAACTGACCTTAAAAGGA
257 GTTAGATGCTAGAGATGATTAATATAGGCATGTTAAGGAAGAACTCAAAACTAACCTTAAAAGAA
* * * **
49361358 GATTAGAGGAATTAAATTTGCTACCTTGCCTTTGTGAGGCTGAAGCTAGTTCTCTTCACCATATG
322 GATTAGAGGAATCAAATTTGCTACATTGCCTTTGTAAGGCTGAAGCTAGTTCTCTTCACCATACA
* *
49361423 TCTGAAATGAGGCTTGAAATGGATTGATTTGCACAGAAAAACAAGAAACTTTCTAAAAAGCTTTA
387 TCTAAAATGAGGCTTGAAATGGATCGATTTGCACAGAAAAACAAGAAACTTTCTAAAAAGCTTTA
49361488 GT
452 GT
*
49361490 TGATTTACAATCACTACCTTTTACTTACGAAATATTACGAATCTCGAGGTCTACGGAATTACGAT
1 TGATTTACAATCACGACCTTTTACTTACGAAATATTACGAATCTCGAGGTCTACGGAATTACGAT
* * * *** * * *
49361555 CACGGCCTTCTACTTACCGTATTTTATGAATCTCGTGGTCCATTAATTTATGATCACAACCTTCT
66 CACGACCTTCTACTTACCGGATTTTACGAATCTCGCAATCCAGTAATTTACGATCACAACCATCT
* * * * *
49361620 ACTTATGGGATTTTACGAATCTCGTAGTCCGCTAATTTACAATCATGACGTTCTACTGACGTGAT
131 ACTTACGGGATTTTACGAATCTCGTAGTCCACTAATTTACAATCACGACCTTCTACTGACGTAAT
* * * * *
49361685 TCTACGAATTTAAACATGTCGATGAAGAATTAAAAACTGACCTCTCTGCCCTTCAAAGCAAGTTA
196 TATACAAATCTAAACATGTCGAAGAAGAACTAAAAACTGACCTCTCTGCCCTTCAAAGCAAGTTA
*
49361750 GATGCTAGAGATGATTAATATAGGCATGTTAAGGAAGAACTTAAAACTAACCTTGAAAGATTGAA
261 GATGCTAGAGATGATTAATATAGGCATGTTAAGGAAGAACTCAAAACTAACCTT-AAA-A--GAA
* *
49361815 GA-TAGAGGAATCAAATTTGTTACATTGCCTTTGTAAGGCTGAAGCTAGTTCTTTTCACCATACA
322 GATTAGAGGAATCAAATTTGCTACATTGCCTTTGTAAGGCTGAAGCTAGTTCTCTTCACCATACA
* * * *
49361879 TCTAAAATGAGGCTTGAAATGGATCGATTTGCTCAGAAAAACAAGGAACTTTCTTAAAAGCTTTG
387 TCTAAAATGAGGCTTGAAATGGATCGATTTGCACAGAAAAACAAGAAACTTTCTAAAAAGCTTTA
49361944 GT
452 GT
* *** * * *** *
49361946 TGATTTACAATCACGAGCTTTTACTTACGGGTTATTATGAATCTCGAGGTTTGTTGATTTACGAT
1 TGATTTACAATCACGACCTTTTACTTACGAAATATTACGAATCTCGAGGTCTACGGAATTACGAT
* * * * * * * * * *
49362011 GACTACTTTCTACTTACGGGATTTTACGAATCTTGCAATTCGGTGATTTACGATGACGACCATCT
66 CACGACCTTCTACTTACCGGATTTTACGAATCTCGCAATCCAGTAATTTACGATCACAACCATCT
* * * * * *
49362076 ATTTACGGGATTTTACGAATCTCGT-GGCCTGCTGATTTACGATCACAACCTTCTACT
131 ACTTACGGGATTTTACGAATCTCGTAGTCC-ACTAATTTACAATCACGACCTTCTACT
49362133 TATGGGATTT
Statistics
Matches: 531, Mismatches: 103, Indels: 15
0.82 0.16 0.02
Matches are distributed among these distances:
453 253 0.48
454 7 0.01
455 6 0.01
456 261 0.49
457 4 0.01
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.34
Consensus pattern (453 bp):
TGATTTACAATCACGACCTTTTACTTACGAAATATTACGAATCTCGAGGTCTACGGAATTACGAT
CACGACCTTCTACTTACCGGATTTTACGAATCTCGCAATCCAGTAATTTACGATCACAACCATCT
ACTTACGGGATTTTACGAATCTCGTAGTCCACTAATTTACAATCACGACCTTCTACTGACGTAAT
TATACAAATCTAAACATGTCGAAGAAGAACTAAAAACTGACCTCTCTGCCCTTCAAAGCAAGTTA
GATGCTAGAGATGATTAATATAGGCATGTTAAGGAAGAACTCAAAACTAACCTTAAAAGAAGATT
AGAGGAATCAAATTTGCTACATTGCCTTTGTAAGGCTGAAGCTAGTTCTCTTCACCATACATCTA
AAATGAGGCTTGAAATGGATCGATTTGCACAGAAAAACAAGAAACTTTCTAAAAAGCTTTAGT
Found at i:49362219 original size:54 final size:54
Alignment explanation
Indices: 49362085--49362253 Score: 142
Period size: 54 Copynumber: 3.1 Consensus size: 54
49362075 TATTTACGGG
* * **
49362085 ATTTTACGAATCTCGTGGCCTGCTGATTTACGATCACAACCTTCTACTTATGGG
1 ATTTTACGAATCTCGTGGTCTGCTAATTTACGATCACAACCTTCTACTTATGCA
* * ** *** ** *
49362139 ATTTAACAAATCTTATGGTGAACTAATTTGTGATCACGACCTTCTACTTAAT-CA
1 ATTTTACGAATCTCGTGGTCTGCTAATTTACGATCACAACCTTCTACTT-ATGCA
* * * * **
49362193 ATTTTACGAATCTCGTGGTCTGCTAATTCACAATCACAATCGTCTACTTATGGG
1 ATTTTACGAATCTCGTGGTCTGCTAATTTACGATCACAACCTTCTACTTATGCA
49362247 ATTTTAC
1 ATTTTAC
49362254 AAACCTCTCA
Statistics
Matches: 83, Mismatches: 30, Indels: 4
0.71 0.26 0.03
Matches are distributed among these distances:
53 2 0.02
54 79 0.95
55 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.37
Consensus pattern (54 bp):
ATTTTACGAATCTCGTGGTCTGCTAATTTACGATCACAACCTTCTACTTATGCA
Found at i:49362288 original size:108 final size:107
Alignment explanation
Indices: 49362085--49362296 Score: 239
Period size: 108 Copynumber: 2.0 Consensus size: 107
49362075 TATTTACGGG
* * * *
49362085 ATTTTACGAATCTCGTGGCCTGCTGATTTACGATCACAACCTTCTACTTATGGGATTTAACAAAT
1 ATTTTACGAATCTCGTGGCCTGCTAATTCACAATCACAACCGTCTACTTATGGGATTTAACAAAT
* ** ***
49362150 CTTATGGTGAACTAATTTGTGATCACGACCTTCTACTTAATCA
66 CTAATGCCG-ACTAATTTACAATCACGACCTTCTACTTAATCA
* * *
49362193 ATTTTACGAATCTCGTGGTCTGCTAATTCACAATCACAATCGTCTACTTATGGGATTTTACAAAC
1 ATTTTACGAATCTCGTGGCCTGCTAATTCACAATCACAACCGTCTACTTATGGGATTTAACAAA-
* *
49362258 CTCTCAAT-CCG-CTAATTTACAATCATGACCTTTTACTTA
65 -TCT-AATGCCGACTAATTTACAATCACGACCTTCTACTTA
49362297 CTGGCTTTTA
Statistics
Matches: 86, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
108 80 0.93
110 4 0.05
111 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.13, T:0.36
Consensus pattern (107 bp):
ATTTTACGAATCTCGTGGCCTGCTAATTCACAATCACAACCGTCTACTTATGGGATTTAACAAAT
CTAATGCCGACTAATTTACAATCACGACCTTCTACTTAATCA
Found at i:49363499 original size:54 final size:54
Alignment explanation
Indices: 49363366--49363522 Score: 140
Period size: 54 Copynumber: 2.9 Consensus size: 54
49363356 AAGCTTCAGT
* * * *
49363366 TGATTTACAATCAC-AACCTTTTACTTTCGAGATTTTACGAATCTCACAGTATGC
1 TGATTTACAATGACGAA-CTTTTACTTACGAGATTTTACGAAACTCACAGTATAC
** * *
49363420 TGATTTATGATGACGACCTTCTACTTACGAGATTTTACGAAACTCTA-AGTCA-AC
1 TGATTTACAATGACGAACTTTTACTTACGAGATTTTACGAAACTC-ACAGT-ATAC
* * * * * *
49363474 TGATTTACAATGATGAATTTTTACTTACTAGATTATATGAATCTCACAG
1 TGATTTACAATGACGAACTTTTACTTACGAGATTTTACGAAACTCACAG
49363523 CTCACTTATT
Statistics
Matches: 81, Mismatches: 18, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
53 1 0.01
54 77 0.95
55 3 0.04
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (54 bp):
TGATTTACAATGACGAACTTTTACTTACGAGATTTTACGAAACTCACAGTATAC
Found at i:49364436 original size:54 final size:54
Alignment explanation
Indices: 49364369--49364715 Score: 349
Period size: 54 Copynumber: 6.4 Consensus size: 54
49364359 GAGTTTTAGT
* * * ** * * *
49364369 TGATTTACAATCACAACCTTTTACTTATGGGATTTTTTGAATCTCGAGGTCTAT
1 TGATTTACGATCACGACCTTCTACTTATGGGATTTTACGAATCTCGTGGTCCAC
**
49364423 TGATTTACGATCACGACCTTCTACTTATGGGATTTTAAC-AATCTCGTGGTCCGT
1 TGATTTACGATCACGACCTTCTACTTATGGGATTTT-ACGAATCTCGTGGTCCAC
** * * **
49364477 TGATTTGTGATCACGACCTTCTACTTACT-AGATTTTACAAATCTCGTGGTCTGC
1 TGATTTACGATCACGACCTTCTACTTA-TGGGATTTTACGAATCTCGTGGTCCAC
* ** *
49364531 TGATTTACGATCACAACCTTCTACTTACAGGATTTTACGAATCTCGCGGTCCAC
1 TGATTTACGATCACGACCTTCTACTTATGGGATTTTACGAATCTCGTGGTCCAC
* * * * * * **
49364585 T-AGTTTATGATCATGATCTTCTACTTAAGGAATTTTACAAATCTCGTGGTCTGC
1 TGA-TTTACGATCACGACCTTCTACTTATGGGATTTTACGAATCTCGTGGTCCAC
* * * * *
49364639 TGATTTACAATCACTACCTTTTGCTTATCGGATTTTACGAATCTCGTGGTCCAC
1 TGATTTACGATCACGACCTTCTACTTATGGGATTTTACGAATCTCGTGGTCCAC
49364693 TGATTTACGATCACGACCTTCTA
1 TGATTTACGATCACGACCTTCTA
49364716 GTGACGTAAT
Statistics
Matches: 237, Mismatches: 50, Indels: 12
0.79 0.17 0.04
Matches are distributed among these distances:
53 3 0.01
54 232 0.98
55 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.38
Consensus pattern (54 bp):
TGATTTACGATCACGACCTTCTACTTATGGGATTTTACGAATCTCGTGGTCCAC
Found at i:49364675 original size:162 final size:162
Alignment explanation
Indices: 49364369--49364715 Score: 403
Period size: 162 Copynumber: 2.1 Consensus size: 162
49364359 GAGTTTTAGT
* * ** ** * *
49364369 TGATTTACAATCACAACCTTTTACTTATGGGATTTTTTGAATCTCGAGGTCTATTGATTTACGAT
1 TGATTTACGATCACAACCTTCTACTTACAGGATTTTACGAATCTCGAGGTCCATAGATTTACGAT
* * * ***
49364434 CACGACCTTCTACTTATGGGATTTTAACAATCTCGTGGTCCGTTGATTTGTGATCACGACCTTCT
66 CACGACCTTCTACTTAAGGAATTTTAACAATCTCGTGGTCCGCTGATTTACAATCACGACCTTCT
**
49364499 ACTTACTAGATTTTACAAATCTCGTGGTCTGC
131 ACTTACTAGATTTTACAAATCTCGTGGTCCAC
* *
49364531 TGATTTACGATCACAACCTTCTACTTACAGGATTTTACGAATCTCGCGGTCCACTAG-TTTATGA
1 TGATTTACGATCACAACCTTCTACTTACAGGATTTTACGAATCTCGAGGTCCA-TAGATTTACGA
* * * *
49364595 TCATGATCTTCTACTTAAGGAATTTT-ACAAATCTCGTGGTCTGCTGATTTACAATCACTACCTT
65 TCACGACCTTCTACTTAAGGAATTTTAAC-AATCTCGTGGTCCGCTGATTTACAATCACGACCTT
* * * *
49364659 TTGCTTA-TCGGATTTTACGAATCTCGTGGTCCAC
129 CTACTTACT-AGATTTTACAAATCTCGTGGTCCAC
*
49364693 TGATTTACGATCACGACCTTCTA
1 TGATTTACGATCACAACCTTCTA
49364716 GTGACGTAAT
Statistics
Matches: 155, Mismatches: 27, Indels: 6
0.82 0.14 0.03
Matches are distributed among these distances:
161 3 0.02
162 150 0.97
163 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.38
Consensus pattern (162 bp):
TGATTTACGATCACAACCTTCTACTTACAGGATTTTACGAATCTCGAGGTCCATAGATTTACGAT
CACGACCTTCTACTTAAGGAATTTTAACAATCTCGTGGTCCGCTGATTTACAATCACGACCTTCT
ACTTACTAGATTTTACAAATCTCGTGGTCCAC
Found at i:49364736 original size:108 final size:108
Alignment explanation
Indices: 49364408--49364727 Score: 396
Period size: 108 Copynumber: 3.0 Consensus size: 108
49364398 GGATTTTTTG
* ** * *
49364408 AATCTCGAGGTCTATTGATTTACGATCACGACCTTCTACTTATGGGATTTTAAC-AATCTCGTGG
1 AATCTCGTGGTCTGCTGATTTACGATCACAACCTTCTACTTATCGGATTTT-ACGAATCTCGTGG
** *
49364472 TCCGTTGATTTGTGATCACGACCTTCTACTTAC-TAGATTTTACA
65 TCCACTGATTTATGATCACGACCTTCTACTTACGTA-ATTTTACA
*
49364516 AATCTCGTGGTCTGCTGATTTACGATCACAACCTTCTACTTA-CAGGATTTTACGAATCTCGCGG
1 AATCTCGTGGTCTGCTGATTTACGATCACAACCTTCTACTTATC-GGATTTTACGAATCTCGTGG
* * * *
49364580 TCCACT-AGTTTATGATCATGATCTTCTACTTAAGGAATTTTACA
65 TCCACTGA-TTTATGATCACGACCTTCTACTTACGTAATTTTACA
* * * *
49364624 AATCTCGTGGTCTGCTGATTTACAATCACTACCTTTTGCTTATCGGATTTTACGAATCTCGTGGT
1 AATCTCGTGGTCTGCTGATTTACGATCACAACCTTCTACTTATCGGATTTTACGAATCTCGTGGT
* * *
49364689 CCACTGATTTACGATCACGACCTTCTAGTGACGTAATTT
66 CCACTGATTTATGATCACGACCTTCTACTTACGTAATTT
49364728 AATGAATCTA
Statistics
Matches: 181, Mismatches: 25, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
107 3 0.02
108 175 0.97
109 3 0.02
ACGTcount: A:0.24, C:0.22, G:0.17, T:0.37
Consensus pattern (108 bp):
AATCTCGTGGTCTGCTGATTTACGATCACAACCTTCTACTTATCGGATTTTACGAATCTCGTGGT
CCACTGATTTATGATCACGACCTTCTACTTACGTAATTTTACA
Found at i:49365110 original size:54 final size:54
Alignment explanation
Indices: 49365031--49365329 Score: 255
Period size: 54 Copynumber: 5.6 Consensus size: 54
49365021 CGACTCTTGA
* * * * * * * * *
49365031 GGTCTGCTAATTTACGATGATGACCTTCGACTTATGGGATTTTATGAAACTCAT
1 GGTCCGCTGATTTACGATCACGACCTTCTACTTACGAGATTTTATGAATCTCGT
* * ** *
49365085 AGTCTGCTGATTTACGATCACGA-C--CTACTTTTGAGATTTTACGAATCTCGT
1 GGTCCGCTGATTTACGATCACGACCTTCTACTTACGAGATTTTATGAATCTCGT
* * * * * * *
49365136 GGTCCGCTAATTTATGATCACGACTTTTTACTTACGGGATTTTACT-AATCTTGC
1 GGTCCGCTGATTTACGATCACGACCTTCTACTTACGAGATTTTA-TGAATCTCGT
* * * * *
49365190 GGTGCACTGATTTACGATCACAACCTTCTACTTAAGAAATTTTATGAATCTCGT
1 GGTCCGCTGATTTACGATCACGACCTTCTACTTACGAGATTTTATGAATCTCGT
* * * *
49365244 GGTCCACTGATTTACGATCATGACCTTCTACTTACGAGATTTTATGAATCTTGC
1 GGTCCGCTGATTTACGATCACGACCTTCTACTTACGAGATTTTATGAATCTCGT
* * * *
49365298 GGTTCGTTGATTTACGATCACAAACTTCTACT
1 GGTCCGCTGATTTACGATCACGACCTTCTACT
49365330 GACGTAATTT
Statistics
Matches: 193, Mismatches: 47, Indels: 10
0.77 0.19 0.04
Matches are distributed among these distances:
51 40 0.21
53 2 0.01
54 151 0.78
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.37
Consensus pattern (54 bp):
GGTCCGCTGATTTACGATCACGACCTTCTACTTACGAGATTTTATGAATCTCGT
Found at i:49365257 original size:108 final size:107
Alignment explanation
Indices: 49365091--49365348 Score: 297
Period size: 108 Copynumber: 2.4 Consensus size: 107
49365081 TCATAGTCTG
* ** * * *
49365091 CTGATTTACGATCACGAC--CTACTTTTGAGATTTTACGAATCTCGTGGTCCGCTAATTTATGAT
1 CTGATTTACGATCACAACTTCTACTTAAGAAATTTTACGAATCTCGTGGTCCACTAATTTACGAT
* * *
49365154 CACGACTTTTTACTTACGGGATTTTACT-AATCTTGCGGTGCA
66 CACGACCTTCTACTTACGAGATTTTA-TGAATCTTGCGGTGCA
* *
49365196 CTGATTTACGATCACAACCTTCTACTTAAGAAATTTTATGAATCTCGTGGTCCACTGATTTACGA
1 CTGATTTACGATCACAA-CTTCTACTTAAGAAATTTTACGAATCTCGTGGTCCACTAATTTACGA
* * *
49365261 TCATGACCTTCTACTTACGAGATTTTATGAATCTTGCGGTTCG
65 TCACGACCTTCTACTTACGAGATTTTATGAATCTTGCGGTGCA
* * * * *
49365304 TTGATTTACGATCACAAACTTCTACTGACGTAATTTTACAAATCT
1 CTGATTTACGATCAC-AACTTCTACTTAAGAAATTTTACGAATCT
49365349 TGGCGTGTTA
Statistics
Matches: 128, Mismatches: 20, Indels: 7
0.83 0.13 0.05
Matches are distributed among these distances:
105 16 0.12
106 1 0.01
107 1 0.01
108 108 0.84
109 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.38
Consensus pattern (107 bp):
CTGATTTACGATCACAACTTCTACTTAAGAAATTTTACGAATCTCGTGGTCCACTAATTTACGAT
CACGACCTTCTACTTACGAGATTTTATGAATCTTGCGGTGCA
Found at i:49365311 original size:612 final size:610
Alignment explanation
Indices: 49364001--49365505 Score: 1677
Period size: 612 Copynumber: 2.5 Consensus size: 610
49363991 ATCTTTCGGG
* * *
49364001 ATTTTACGAATCTCGTGGTTCGCTGATTTACGATCACGACCTTCTACTTACGGGATTTTACAA-C
1 ATTTTACGAATCTCGTGGTCCGCTGATTTACGATCATGACCTTCTACTTAC-GGATTTTAGAATC
* * * * ** * *
49364065 TCAC-ATTCCACTAATTTATGATCACGACCTTCTACTTTCGTGATTTTATGAATCTAGTCGTGTT
65 TCGCGGTT-CACTGATTTACGATCACGACCTTCTACTGACGTAATTTTATGAATCTAGGCGTGTT
* * * * * * * **
49364129 CAGGAATAACTCAAAACTGACCACTCTGCCCCTT-AGAGCAAGTTAGATGTTAGAGATTATGGAT
129 AAAGAAGAACTAAAAACTGACCTCTCTG-CCCTTCAGAGCAAGTTAGATGCTAGAGATGATTAAT
* ** * * *
49364193 ATAGCCACGTTGAGGAAGAACTCAAAACTGACCTTAAAAGAAGAAGAATAGATGAATCAATTTTC
193 ATAGGCGTGTTGAGGAAGAACTCAAAACTGACCTTAAAAG--G-AG-ATAGAGGAATCAAATTTG
* * ** *
49364258 TTACAATT-CCTTTGTGTGACTAAAACTAGTTCTCTTCACCATATTTCTGAAACGAAGCTTGAAA
254 TTAC-ATTGCCTTTGTGAGGCTAAAACTAGTTCTCTTCACCATACGTCTAAAACGAAGCTTGAAA
* * * * * *
49364322 TAGATTGATCTTCTCAGAAAATAAGGAATTTTTTGAAGAGTTTTAGTTGATTTACAATCACAACC
318 TAGATTGATCTTCACAGAAAACAAGGAACTTTCTGAAAAGCTTTAGTTGATTTACAATCACAACC
* *** * * *
49364387 TTTTACTTATGGGATTTTTTGAATCTCGAGGTCTATTGATTTACGATCACGACCTTCTACTTATG
383 TTTTACTTACGGGATTTCACGAATCTCGAGGTCTACTAATTTACGATCACGACCTTCGACTTATG
* * * * **
49364452 GGATTTTAACAATCTCGTGGTCCGTTGATTTGTGATCACGACCTTCTACTTACTAGATTTTACAA
448 GGATTTTAACAAACTCATAGTCCGCTGATTTACGATCACGACC-TCTACTTACTAGATTTTACAA
* *
49364517 ATCTCGTGGTCTGCTGATTTACGATCACAACCTTCTACTTACAGGATTTTACGAATCTCGCGGTC
512 ATCTCGTGGTCCGCTAATTTACGATCACAACCTTCTACTTACAGGATTTTACGAATCTCGCGGTC
* ** * *
49364582 CACTAGTTTATGATCATGATCTTCTACTTAAGGA
577 CACTAGTTTACGATCACAACCTTCTACTTAAGAA
* * * * *
49364616 ATTTTACAAATCTCGTGGTCTGCTGATTTACAATCACT-ACCTTTTGCTTATCGGATTTTACGAA
1 ATTTTACGAATCTCGTGGTCCGCTGATTTACGATCA-TGACCTTCTACTTA-CGGATTTTA-GAA
* * * * *
49364680 TCTCGTGGTCCACTGATTTACGATCACGACCTTCTAGTGACGTAATTTAATGAATCTAGGCATGT
63 TCTCGCGGTTCACTGATTTACGATCACGACCTTCTACTGACGTAATTTTATGAATCTAGGCGTGT
* **
49364745 TGAAGAAGAACTAAAAACTGACCTCTCTGCTTTTCAGAGCAAGTTAGATGCTAGAGATGATTAAT
128 TAAAGAAGAACTAAAAACTGACCTCTCTGCCCTTCAGAGCAAGTTAGATGCTAGAGATGATTAAT
49364810 ATAGGCGTGTTGAGGAAGAACTCAAAACTGACCTTAAAAGGAGATTAGAGGAATCAAATTTGTTA
193 ATAGGCGTGTTGAGGAAGAACTCAAAACTGACCTTAAAAGGAGA-TAGAGGAATCAAATTTGTTA
* * * * * *
49364875 CCTTGCCTTTGTGAGGCTGAAGCTAGTTCTCTTCACCATACGTCTAAAATGAGGCTTGAAATGGA
257 CATTGCCTTTGTGAGGCTAAAACTAGTTCTCTTCACCATACGTCTAAAACGAAGCTTGAAATAGA
**
49364940 TTGAT-TTGCACAGTAAAACAAGGAACTTTCTGAAAAGCTTTAGTTGATTTACAATCATGACCTT
322 TTGATCTT-CACAG-AAAACAAGGAACTTTCTGAAAAGCTTTAGTTGATTTACAATCACAACCTT
* * * * *
49365004 TTACTTACGGG-TTATCACGACTCTTGAGGTCTGCTAATTTACGATGATGACCTTCGACTTATGG
385 TTACTTACGGGATT-TCACGAATCTCGAGGTCTACTAATTTACGATCACGACCTTCGACTTATGG
** * * *
49365068 GATTTTATGAAACTCATAGTCTGCTGATTTACGATCACGA-C-CTACTT-TTGAGATTTTACGAA
449 GATTTTAACAAACTCATAGTCCGCTGATTTACGATCACGACCTCTACTTACT-AGATTTTACAAA
* * * * * * * *
49365130 TCTCGTGGTCCGCTAATTTATGATCACGACTTTTTACTTACGGGATTTTACTAATCTTGCGGTGC
513 TCTCGTGGTCCGCTAATTTACGATCACAACCTTCTACTTACAGGATTTTACGAATCTCGCGGTCC
49365195 ACT-GATTTACGATCACAACCTTCTACTTAAGAA
578 ACTAG-TTTACGATCACAACCTTCTACTTAAGAA
* *
49365228 ATTTTATGAATCTCGTGGTCCACTGATTTACGATCATGACCTTCTACTTACGAGATTTTATGAAT
1 ATTTTACGAATCTCGTGGTCCGCTGATTTACGATCATGACCTTCTACTTACG-GATTTTA-GAAT
* ** * * ** *
49365293 CTTGCGGTTCGTTGATTTACGATCACAAACTTCTACTGACGTAATTTTACAAATCTTGGCGTGTT
64 CTCGCGGTTCACTGATTTACGATCACGACCTTCTACTGACGTAATTTTATGAATCTAGGCGTGTT
* * * *
49365358 AAAGAAGAACTAAAAA-TTAGCCTCTCAT-CCCTTCAGAGCAAGTTTGATTCGAGAGATGATTAA
129 AAAGAAGAACTAAAAACTGA-CCTCTC-TGCCCTTCAGAGCAAGTTAGATGCTAGAGATGATTAA
* * * *
49365421 TATTGGCGTGTTGAGGAAGAACTCAAAACTAATCTTAAAAGGAGGATAGAGGAATTAAATTTGTT
192 TATAGGCGTGTTGAGGAAGAACTCAAAACTGACCTTAAAAGGA-GATAGAGGAATCAAATTTGTT
*
49365486 ACATTGCCATTGTGAGGCTA
256 ACATTGCCTTTGTGAGGCTA
49365506 GAATGACGGA
Statistics
Matches: 742, Mismatches: 130, Indels: 39
0.81 0.14 0.04
Matches are distributed among these distances:
611 7 0.01
612 328 0.44
613 8 0.01
614 82 0.11
615 174 0.23
616 6 0.01
617 136 0.18
618 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (610 bp):
ATTTTACGAATCTCGTGGTCCGCTGATTTACGATCATGACCTTCTACTTACGGATTTTAGAATCT
CGCGGTTCACTGATTTACGATCACGACCTTCTACTGACGTAATTTTATGAATCTAGGCGTGTTAA
AGAAGAACTAAAAACTGACCTCTCTGCCCTTCAGAGCAAGTTAGATGCTAGAGATGATTAATATA
GGCGTGTTGAGGAAGAACTCAAAACTGACCTTAAAAGGAGATAGAGGAATCAAATTTGTTACATT
GCCTTTGTGAGGCTAAAACTAGTTCTCTTCACCATACGTCTAAAACGAAGCTTGAAATAGATTGA
TCTTCACAGAAAACAAGGAACTTTCTGAAAAGCTTTAGTTGATTTACAATCACAACCTTTTACTT
ACGGGATTTCACGAATCTCGAGGTCTACTAATTTACGATCACGACCTTCGACTTATGGGATTTTA
ACAAACTCATAGTCCGCTGATTTACGATCACGACCTCTACTTACTAGATTTTACAAATCTCGTGG
TCCGCTAATTTACGATCACAACCTTCTACTTACAGGATTTTACGAATCTCGCGGTCCACTAGTTT
ACGATCACAACCTTCTACTTAAGAA
Found at i:49366289 original size:46 final size:46
Alignment explanation
Indices: 49366221--49366503 Score: 467
Period size: 46 Copynumber: 6.1 Consensus size: 46
49366211 TACCCTATTT
* *
49366221 TGGACAACATTTATACATCAAATTGGACAGCATTAATATGCTCAAAA
1 TGGACAGCA-TTATACATCAAATTGGACAGCATCAATATGCTCAAAA
49366268 TGGACAGCATTATACATCAAATTGGACAGCATCAATATGCTCAAAA
1 TGGACAGCATTATACATCAAATTGGACAGCATCAATATGCTCAAAA
* * * *
49366314 TGGACAGCACTATACATCAAATTGGACAGCTTTAATATGCTCAAAT
1 TGGACAGCATTATACATCAAATTGGACAGCATCAATATGCTCAAAA
*
49366360 TGGACATCATTATACATCAAATTGGACAGCATCAATATGCTCAAAA
1 TGGACAGCATTATACATCAAATTGGACAGCATCAATATGCTCAAAA
*
49366406 TGGACAGCATTATACATCAAATTGGACAGCATCAATATACTCAAAA
1 TGGACAGCATTATACATCAAATTGGACAGCATCAATATGCTCAAAA
* *
49366452 TGGACAGCATTATACATTAAATTGGACAGTATCAATATGCTCAAAA
1 TGGACAGCATTATACATCAAATTGGACAGCATCAATATGCTCAAAA
49366498 TGGACA
1 TGGACA
49366504 ACACTATAAC
Statistics
Matches: 220, Mismatches: 16, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
46 212 0.96
47 8 0.04
ACGTcount: A:0.41, C:0.18, G:0.14, T:0.26
Consensus pattern (46 bp):
TGGACAGCATTATACATCAAATTGGACAGCATCAATATGCTCAAAA
Found at i:49367265 original size:41 final size:40
Alignment explanation
Indices: 49367220--49367338 Score: 123
Period size: 41 Copynumber: 3.0 Consensus size: 40
49367210 CTATTATAAT
* * * *
49367220 CTCGCACACTAACTGCCTTACATAGCTGAAGCTATCTCAGC
1 CTCGCACACTAAGTGCCATAAATAGCTGAAGCTATCTCA-A
* * *
49367261 CTCGCACACTAAGTGCCATATATAGCCGAATCTAT-TCCAA
1 CTCGCACACTAAGTGCCATAAATAGCTGAAGCTATCT-CAA
* * *
49367301 ATCACACAATAAGTGCCATAAATAGCTGAAGCTATCTC
1 CTCGCACACTAAGTGCCATAAATAGCTGAAGCTATCTC
49367339 GAATTTCATA
Statistics
Matches: 64, Mismatches: 12, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
40 31 0.48
41 33 0.52
ACGTcount: A:0.33, C:0.29, G:0.13, T:0.24
Consensus pattern (40 bp):
CTCGCACACTAAGTGCCATAAATAGCTGAAGCTATCTCAA
Found at i:49372654 original size:25 final size:26
Alignment explanation
Indices: 49372625--49372680 Score: 73
Period size: 25 Copynumber: 2.2 Consensus size: 26
49372615 TTAATTAGTA
*
49372625 TAAAATATT-AATAATTTAAT-AAAT
1 TAAAATATTAAATAATTAAATAAAAT
49372649 TGAAAA-ATTAAATAATTAAATAAAAT
1 T-AAAATATTAAATAATTAAATAAAAT
49372675 TAAAAT
1 TAAAAT
49372681 TTAGGAGAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
24 4 0.15
25 18 0.67
26 5 0.19
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (26 bp):
TAAAATATTAAATAATTAAATAAAAT
Found at i:49373272 original size:22 final size:19
Alignment explanation
Indices: 49373233--49373274 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 19
49373223 TGCAAAGTTG
49373233 ATAATAATTAATATATATT
1 ATAATAATTAATATATATT
49373252 ATAATAGATATAATTATATATT
1 ATAATA-AT-TAA-TATATATT
49373274 A
1 A
49373275 ATGATTATCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
20 2 0.10
21 3 0.15
22 9 0.45
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (19 bp):
ATAATAATTAATATATATT
Found at i:49373394 original size:29 final size:30
Alignment explanation
Indices: 49373335--49373395 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 30
49373325 GTCTTTCGAA
*** *
49373335 AATATTTACAAAAAGAGACATTTAATTTTT
1 AATATTTACAAAAAGAGACAACAAAATTTT
49373365 AATATTTACAAAAAGAG-CAACAAAATTTT
1 AATATTTACAAAAAGAGACAACAAAATTTT
49373394 AA
1 AA
49373396 AAATAATTCA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
29 10 0.37
30 17 0.63
ACGTcount: A:0.52, C:0.08, G:0.07, T:0.33
Consensus pattern (30 bp):
AATATTTACAAAAAGAGACAACAAAATTTT
Found at i:49381435 original size:182 final size:182
Alignment explanation
Indices: 49381128--49381495 Score: 628
Period size: 182 Copynumber: 2.0 Consensus size: 182
49381118 TCAGCTACCT
*
49381128 TAGATGATTAAACATGCACTGATTGAGTATCATGTCAATTAATTATAATTTCAATCCGTTTAAAT
1 TAGATGATTAAACATGCACTGATTGAGTATCATGTCAATTAATTACAATTTCAATCCGTTTAAAT
* *
49381193 AATTAATTCATTAGTTTCCTTACAATTGTAATGCAAGAATAACTTATTCAAGGTTTTACTTAATC
66 AATTAATTCATTAGTTACCTTACAATTGTAATGCAAGAATAACTTAGTCAAGGTTTTACTTAATC
* * *
49381258 AAACATCTTACCGAGGCCTATAACAACACAAACACAATTTTAATAACTCAAG
131 AAACATCTTACCGAGGCCTATAACAACACAAAAAAAAATTTAATAACTCAAG
* *
49381310 TAGATGATTAAACATGCACTGATTGAGTATCGTGTCAATTAATTACAATTTCAATTCGTTTAAAT
1 TAGATGATTAAACATGCACTGATTGAGTATCATGTCAATTAATTACAATTTCAATCCGTTTAAAT
* *
49381375 AATTAATTTATTAGTTACCTTACAATTGTAATGCAAGAATAACTTAGTCATGGTTTTACTTAATC
66 AATTAATTCATTAGTTACCTTACAATTGTAATGCAAGAATAACTTAGTCAAGGTTTTACTTAATC
* *
49381440 AAACATTTTACCGAGGCCTATAACAACACAAAAAAAAATTTAATAACTCCAG
131 AAACATCTTACCGAGGCCTATAACAACACAAAAAAAAATTTAATAACTCAAG
49381492 TAGA
1 TAGA
49381496 CGAAATGCAA
Statistics
Matches: 174, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
182 174 1.00
ACGTcount: A:0.39, C:0.15, G:0.11, T:0.35
Consensus pattern (182 bp):
TAGATGATTAAACATGCACTGATTGAGTATCATGTCAATTAATTACAATTTCAATCCGTTTAAAT
AATTAATTCATTAGTTACCTTACAATTGTAATGCAAGAATAACTTAGTCAAGGTTTTACTTAATC
AAACATCTTACCGAGGCCTATAACAACACAAAAAAAAATTTAATAACTCAAG
Found at i:49383612 original size:39 final size:39
Alignment explanation
Indices: 49383567--49383642 Score: 152
Period size: 39 Copynumber: 1.9 Consensus size: 39
49383557 TTTTACGAAA
49383567 ATCGCGGTCAGTTGATTTATGATGACGACCTTTTACTGG
1 ATCGCGGTCAGTTGATTTATGATGACGACCTTTTACTGG
49383606 ATCGCGGTCAGTTGATTTATGATGACGACCTTTTACT
1 ATCGCGGTCAGTTGATTTATGATGACGACCTTTTACT
49383643 AGATTATATG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.21, C:0.18, G:0.24, T:0.37
Consensus pattern (39 bp):
ATCGCGGTCAGTTGATTTATGATGACGACCTTTTACTGG
Found at i:49383786 original size:54 final size:54
Alignment explanation
Indices: 49383721--49383905 Score: 192
Period size: 54 Copynumber: 3.4 Consensus size: 54
49383711 CACGATATTC
* * * *
49383721 TACTTATGGGATTTAACAAATCTCATGGGCCGTTGATTTATTATCATGACCTTA
1 TACTTAAGGGATTTTACGAATCTCATGGGCCGTTGATTTATGATCATGACCTTA
* ** * * *
49383775 TACTTAAGGGATTTTATGAATCTTGTAGTCCGTTGATTTATGATCATGACCTTT
1 TACTTAAGGGATTTTACGAATCTCATGGGCCGTTGATTTATGATCATGACCTTA
* ** ** **
49383829 TACTTACA-GGATTTTACGAATCTCATGGTCTATTGATTTATGATCGCGACCTCC
1 TACTTA-AGGGATTTTACGAATCTCATGGGCCGTTGATTTATGATCATGACCTTA
*
49383883 TACTTACGGGATTTTACGAATCT
1 TACTTAAGGGATTTTACGAATCT
49383906 AGGTGTGTTG
Statistics
Matches: 108, Mismatches: 21, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
54 107 0.99
55 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.17, T:0.40
Consensus pattern (54 bp):
TACTTAAGGGATTTTACGAATCTCATGGGCCGTTGATTTATGATCATGACCTTA
Found at i:49384546 original size:346 final size:345
Alignment explanation
Indices: 49383806--49384568 Score: 871
Period size: 346 Copynumber: 2.2 Consensus size: 345
49383796 CTTGTAGTCC
** * * ** * *
49383806 GTTGATTTATGATCATGACCTTTTACTTACAGGATTTTACGAATCTCATGGTCTATTGATTTATG
1 GTTGATTTACAATCACGACCTTTTA-TTATAGGATTTTACGAATCTCGCGGTCCATTGATTTACG
* * * *
49383871 ATCGCGACCTCCTACTTACGGGATTTTACGAATCTAGGTGTGTTGAGGAAGAACTCAAAACTAAC
65 AT--CAACCTCCTACATACGGGATTTTACGAATCTAGGTGTGTTCAAGAAGAACTCAAAACTAAC
* **
49383936 CTATCTGCCCTTCAAAGCAAGTTATATGCTAGAGATAATGAATATATGTGTGTTGAGGAAGAACT
128 CTATCTGCCCTTCAAAGCAAGTTAGATGCTAGAGATAATGAATATATGCATGTTGAGGAAGAACT
* *
49384001 CAAAACTAACCTTGAAAGAAAGATGATAGTGGAATTAATTTTGTTACATTACCTTTGTGAAGCAG
193 CAAAACTAACCTTGAAAGAAAGATGATAGTGGAATCAACTTTGTTACATTACCTTTGTGAAGCAG
* ** * * *
49384066 AAGCTAGTTCTCTTCACCATACATCTGATATGTGGCTTTTATTTGATCTATCTGTTCAGAAAAAC
258 AAGCTAGTTCTCTTCACCATACATCTGAAATGTGGCTTGAAATGGATCGATCTGTTCAGAAAAAC
49384131 AAGGAAAATATTGAAAAGCTTCA
323 AAGGAAAATATTGAAAAGCTTCA
* * ** *
49384154 GTTGATTTACAATCACGACC-TTTATCTTTCGAGATTTTTTGAATCTCGCGATCCATTGATTTAC
1 GTTGATTTACAATCACGACCTTTTAT-TATAG-GATTTTACGAATCTCGCGGTCCATTGATTTAC
* * * * *
49384218 AATCAATCTTCTACATACGTGATTTTATGAATCTA-GTCGTGTTCAAGAAGAACTCAAAACTAAC
64 GATCAACCTCCTACATACGGGATTTTACGAATCTAGGT-GTGTTCAAGAAGAACTCAAAACTAAC
* * * * * *
49384282 C-ACTCTGTCTTTCAGAGCAAGTTAGATGTTAGAGATTATGCATATA-GCCATGTTGAGGAAGAA
128 CTA-TCTGCCCTTCAAAGCAAGTTAGATGCTAGAGATAATGAATATATG-CATGTTGAGGAAGAA
* * *
49384345 CTCAAAACTGACCTTGAAAGAAGGA-GAATAGAT-GAATCAACTTTGTTACAATT-CCTTTGTGT
191 CTCAAAACTAACCTTGAAAGAAAGATG-ATAG-TGGAATCAACTTTGTTAC-ATTACCTTTGTGA
* * * * *
49384407 GGCTGAAGCTAGTTCTTTTCACTATACTTCTGAAATGTGGCTTGAAATGGATCGATCT-TCTCAG
253 AGCAGAAGCTAGTTCTCTTCACCATACATCTGAAATGTGGCTTGAAATGGATCGATCTGT-TCAG
* *
49384471 AAAAACAAGG-AACT-TTCTAAAGAGCTTCA
317 AAAAACAAGGAAAATATT-GAAA-AGCTTCA
*
49384500 GTTGATTTACAATCACGACCTTTTAGTTATAGGATTTTACGAATCTCGCGGTCCACTGATTTACG
1 GTTGATTTACAATCACGACCTTTTA-TTATAGGATTTTACGAATCTCGCGGTCCATTGATTTACG
49384565 ATCA
65 ATCA
49384569 CAACTTTCTA
Statistics
Matches: 346, Mismatches: 56, Indels: 28
0.80 0.13 0.07
Matches are distributed among these distances:
344 2 0.01
345 12 0.03
346 270 0.78
347 17 0.05
348 45 0.13
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (345 bp):
GTTGATTTACAATCACGACCTTTTATTATAGGATTTTACGAATCTCGCGGTCCATTGATTTACGA
TCAACCTCCTACATACGGGATTTTACGAATCTAGGTGTGTTCAAGAAGAACTCAAAACTAACCTA
TCTGCCCTTCAAAGCAAGTTAGATGCTAGAGATAATGAATATATGCATGTTGAGGAAGAACTCAA
AACTAACCTTGAAAGAAAGATGATAGTGGAATCAACTTTGTTACATTACCTTTGTGAAGCAGAAG
CTAGTTCTCTTCACCATACATCTGAAATGTGGCTTGAAATGGATCGATCTGTTCAGAAAAACAAG
GAAAATATTGAAAAGCTTCA
Found at i:49384592 original size:54 final size:54
Alignment explanation
Indices: 49384502--49384807 Score: 206
Period size: 54 Copynumber: 5.7 Consensus size: 54
49384492 GAGCTTCAGT
* * * * *
49384502 TGATTTACAATCACGACCTTT-TAGTTATAGGATTTTACGAATCTCGCGGTCCAC
1 TGATTTACGATCAC-AACTTTCTACTTATGGGATTTTACAAATCTCGCGGTCCAC
* * ** **
49384556 TGATTTACGATCACAACTTTCTACTTACGGGGTTTTATTAATCTCGCGGTCCTT
1 TGATTTACGATCACAACTTTCTACTTATGGGATTTTACAAATCTCGCGGTCCAC
* * * ** *
49384610 TGATTTACGATCACGACCTTT-TACCTATGGGATTTTAAAAATCTCATGGGCCAC
1 TGATTTACGATCAC-AACTTTCTACTTATGGGATTTTACAAATCTCGCGGTCCAC
* * ** ** * ** *
49384664 TTATTTACAATCACAA-TCTTCTACTTATGGGATTTTATGAATCTCATGCTTTAT
1 TGATTTACGATCACAACT-TTCTACTTATGGGATTTTACAAATCTCGCGGTCCAC
* * * * **
49384718 TGATTTACGATCACGACCTTCTACTTATGTGATTTTACAAATCTTGCGACCCAC
1 TGATTTACGATCACAACTTTCTACTTATGGGATTTTACAAATCTCGCGGTCCAC
* * ** * *
49384772 T-ATTTACGTTGATGACTTTTTACTTATAGGATTTTA
1 TGATTTACGATCACAACTTTCTACTTATGGGATTTTA
49384808 TGAGTCTTAC
Statistics
Matches: 193, Mismatches: 54, Indels: 11
0.75 0.21 0.04
Matches are distributed among these distances:
52 1 0.01
53 36 0.19
54 151 0.78
55 5 0.03
ACGTcount: A:0.25, C:0.20, G:0.14, T:0.40
Consensus pattern (54 bp):
TGATTTACGATCACAACTTTCTACTTATGGGATTTTACAAATCTCGCGGTCCAC
Found at i:49384690 original size:108 final size:108
Alignment explanation
Indices: 49384501--49385005 Score: 311
Period size: 108 Copynumber: 4.7 Consensus size: 108
49384491 AGAGCTTCAG
* * * * * * *
49384501 TTGATTTACAATCACGACCTTTTAGTTATAGGATTTTACGAATCTCGCGGTCCACTGATTTACGA
1 TTGATTTACGATCACGACCTTTTACTTATGGGATTTTACAAATCTCACGGGCCACTGATTTACAA
* * * *
49384566 TCACAACTTTCTACTTACGGGGTTTTATTAATCTCGCGGTCCT-
66 TCACAACTTTCTACTTACGGGATTTTATGAATCTCACGCT-CTA
* * * *
49384609 TTGATTTACGATCACGACCTTTTACCTATGGGATTTTAAAAATCTCATGGGCCACTTATTTACAA
1 TTGATTTACGATCACGACCTTTTACTTATGGGATTTTACAAATCTCACGGGCCACTGATTTACAA
* * *
49384674 TCACAA-TCTTCTACTTATGGGATTTTATGAATCTCATGCTTTA
66 TCACAACT-TTCTACTTACGGGATTTTATGAATCTCACGCTCTA
* * ** ** **
49384717 TTGATTTACGATCACGACCTTCTACTTATGTGATTTTACAAATCTTGCGACCCACT-ATTTACGT
1 TTGATTTACGATCACGACCTTTTACTTATGGGATTTTACAAATCTCACGGGCCACTGATTTACAA
* ** * ** * * * *
49384781 TGATGACTTTTTACTTATAGGATTTTATGAGTCTTACGGTATA
66 TCACAACTTTCTACTTACGGGATTTTATGAATCTCACGCTCTA
* * * * * * * * * *****
49384824 TTGATTTAGGAGCATGGCCTTCTACTTACGTGG-TTTTACAAATATTATGGTATGTTGATTTACA
1 TTGATTTACGATCACGACCTTTTACTTATG-GGATTTTACAAATCTCACGGGCCACTGATTTACA
** * * * * *
49384888 ATCATGACATTT-TACTTACGAGAATTTATGAATCTCATGGT-TCG
65 ATCACAAC-TTTCTACTTACGGGATTTTATGAATCTCACGCTCT-A
* * * * * ** * **
49384932 CTGATTGACAATCACGACCTTCTACTTACGGGATTTTACAAATCTCGTGGCCCGTTGATTTACAA
1 TTGATTTACGATCACGACCTTTTACTTATGGGATTTTACAAATCTCACGGGCCACTGATTTACAA
*
49384997 TCACGACTT
66 TCACAACTT
49385006 GCTGCATACA
Statistics
Matches: 310, Mismatches: 79, Indels: 17
0.76 0.19 0.04
Matches are distributed among these distances:
107 83 0.27
108 224 0.72
109 3 0.01
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (108 bp):
TTGATTTACGATCACGACCTTTTACTTATGGGATTTTACAAATCTCACGGGCCACTGATTTACAA
TCACAACTTTCTACTTACGGGATTTTATGAATCTCACGCTCTA
Done.