Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67659327
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 461372 characters in sequence are not A, C, G, or T
File 159 of 216
Found at i:49990496 original size:13 final size:13
Alignment explanation
Indices: 49990478--49990503 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
49990468 AATCCGAGTC
49990478 AAAAAAATATTTT
1 AAAAAAATATTTT
49990491 AAAAAAATATTTT
1 AAAAAAATATTTT
49990504 CTGTGTTTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
AAAAAAATATTTT
Found at i:49995525 original size:5 final size:5
Alignment explanation
Indices: 49995515--49995539 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
49995505 GATATATTTA
49995515 AAATT AAATT AAATT AAATT AAATT
1 AAATT AAATT AAATT AAATT AAATT
49995540 TAATACTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
AAATT
Found at i:49997525 original size:33 final size:33
Alignment explanation
Indices: 49997483--49997628 Score: 114
Period size: 33 Copynumber: 4.4 Consensus size: 33
49997473 TGTATATATA
*
49997483 TAAGACCATAGCTGGGCTATGACATTCTAATGT
1 TAAGACCATAGCTGGGCTATGGCATTCTAATGT
* * * * * ***
49997516 TAAGACCATAACCGGGTTATGGCACTATAAACA
1 TAAGACCATAGCTGGGCTATGGCATTCTAATGT
* * * * *
49997549 TAAGACCAT-GATTGGACTATGGCAGTGTATATAT
1 TAAGACCATAG-CTGGGCTATGGCATTCTA-ATGT
* *
49997583 ATAAGACCATAGCTGGGCTACGGCATTCTAATGG
1 -TAAGACCATAGCTGGGCTATGGCATTCTAATGT
49997617 TAAGACCATAGC
1 TAAGACCATAGC
49997629 CGAGTTATGG
Statistics
Matches: 83, Mismatches: 26, Indels: 8
0.71 0.22 0.07
Matches are distributed among these distances:
33 57 0.69
34 3 0.04
35 22 0.27
36 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (33 bp):
TAAGACCATAGCTGGGCTATGGCATTCTAATGT
Found at i:49997593 original size:101 final size:99
Alignment explanation
Indices: 49997412--49997749 Score: 370
Period size: 101 Copynumber: 3.5 Consensus size: 99
49997402 ATAGCGTAGT
* * * * * * * * *
49997412 TGGTATGACCAAAACAGGGTTGTGACATTATGAACATAAGACCATGGTTGGACCATGGTAATGTA
1 TGGTAAGACCATAACCGGGTTATGGCACTATAAACATAAGACCAT-GTTGGA-CATGGCAGTGTA
*
49997477 TATATATAAGACCATAGCTGGGCTATGACATTCTAA
64 TATATATAAGACCATAGCTGGGCTATGGCATTCTAA
*
49997513 TGTTAAGACCATAACCGGGTTATGGCACTATAAACATAAGACCATGATTGGACTATGGCAGTGTA
1 TGGTAAGACCATAACCGGGTTATGGCACTATAAACATAAGACCATG-TTGGAC-ATGGCAGTGTA
*
49997578 TATATATAAGACCATAGCTGGGCTACGGCATTCTAA
64 TATATATAAGACCATAGCTGGGCTATGGCATTCTAA
* * * *
49997614 TGGTAAGACCATAGCCGAGTTATGGCACTATGAACGTAAGA-C--------CATGGCAGTGTATA
1 TGGTAAGACCATAACCGGGTTATGGCACTATAAACATAAGACCATGTTGGACATGGCAGTGTATA
* **
49997670 TATATAAGACCATAGCTAGGCTATGGCATTCTGG
66 TATATAAGACCATAGCTGGGCTATGGCATTCTAA
* * * *
49997704 TGGTAAGACCATAATCAGGTTATGACACTATAAACGTAAGACCATG
1 TGGTAAGACCATAACCGGGTTATGGCACTATAAACATAAGACCATG
49997750 GCAGGGCCAT
Statistics
Matches: 204, Mismatches: 27, Indels: 19
0.82 0.11 0.08
Matches are distributed among these distances:
90 78 0.38
91 2 0.01
100 3 0.01
101 121 0.59
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26
Consensus pattern (99 bp):
TGGTAAGACCATAACCGGGTTATGGCACTATAAACATAAGACCATGTTGGACATGGCAGTGTATA
TATATAAGACCATAGCTGGGCTATGGCATTCTAA
Found at i:49997726 original size:90 final size:90
Alignment explanation
Indices: 49997567--49997753 Score: 286
Period size: 90 Copynumber: 2.1 Consensus size: 90
49997557 TGATTGGACT
* *
49997567 ATGGCAGTGTATATATATAAGACCATAGCTGGGCTACGGCATTCTAATGGTAAGACCATAGCCGA
1 ATGGCAGTGTATATATATAAGACCATAGCTAGGCTACGGCATTCTAATGGTAAGACCATAGCAGA
* *
49997632 GTTATGGCACTATGAACGTAAGACC
66 GTTATGACACTATAAACGTAAGACC
* ** *
49997657 ATGGCAGTGTATATATATAAGACCATAGCTAGGCTATGGCATTCTGGTGGTAAGACCATAATCAG
1 ATGGCAGTGTATATATATAAGACCATAGCTAGGCTACGGCATTCTAATGGTAAGACCAT-AGCAG
49997722 -GTTATGACACTATAAACGTAAGACC
65 AGTTATGACACTATAAACGTAAGACC
49997747 ATGGCAG
1 ATGGCAG
49997754 GGCCATGACA
Statistics
Matches: 88, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
90 85 0.97
91 3 0.03
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (90 bp):
ATGGCAGTGTATATATATAAGACCATAGCTAGGCTACGGCATTCTAATGGTAAGACCATAGCAGA
GTTATGACACTATAAACGTAAGACC
Found at i:50000703 original size:12 final size:12
Alignment explanation
Indices: 50000674--50000716 Score: 59
Period size: 12 Copynumber: 3.5 Consensus size: 12
50000664 TGAAGATGAA
50000674 TCATTTCTCATTT
1 TCATTTCT-ATTT
50000687 TCATTTCTATTT
1 TCATTTCTATTT
* *
50000699 CCATTTCCATTT
1 TCATTTCTATTT
50000711 TCATTT
1 TCATTT
50000717 TGAGAAAACC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
12 19 0.70
13 8 0.30
ACGTcount: A:0.16, C:0.23, G:0.00, T:0.60
Consensus pattern (12 bp):
TCATTTCTATTT
Found at i:50003960 original size:19 final size:20
Alignment explanation
Indices: 50003919--50003971 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 20
50003909 TCATATTAGT
* * *
50003919 TTTTCTTAATTTTCTATATA
1 TTTTCTTAATTTTTTAAAAA
50003939 TTTT-TTAATTTTTTAAAAA
1 TTTTCTTAATTTTTTAAAAA
*
50003958 TTTTCTTACTTTTT
1 TTTTCTTAATTTTT
50003972 AATTTTTTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 16 0.57
20 12 0.43
ACGTcount: A:0.25, C:0.08, G:0.00, T:0.68
Consensus pattern (20 bp):
TTTTCTTAATTTTTTAAAAA
Found at i:50017642 original size:41 final size:41
Alignment explanation
Indices: 50017597--50017748 Score: 223
Period size: 41 Copynumber: 3.7 Consensus size: 41
50017587 CATTGAATGT
* * *
50017597 AAGGGGTTGCTAAGTGCAGATTACCTGAATCACTGATCAAA
1 AAGGGGTTGCTAAGTGCAGATTCCCCGAAACACTGATCAAA
* *
50017638 AAGGGGTTGCTAAGTGTAGATTCCCCGAAAAACTGATCAAA
1 AAGGGGTTGCTAAGTGCAGATTCCCCGAAACACTGATCAAA
* * *
50017679 AAGGGGTTGCTAAGTGCAGATTCCCCAAAACTCTGATAAAA
1 AAGGGGTTGCTAAGTGCAGATTCCCCGAAACACTGATCAAA
*
50017720 AAGGGGTTGCTAAGTGCTGATTCCCCGAA
1 AAGGGGTTGCTAAGTGCAGATTCCCCGAA
50017749 TTATTAATTC
Statistics
Matches: 99, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 99 1.00
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (41 bp):
AAGGGGTTGCTAAGTGCAGATTCCCCGAAACACTGATCAAA
Found at i:50017764 original size:41 final size:41
Alignment explanation
Indices: 50017597--50017785 Score: 206
Period size: 41 Copynumber: 4.6 Consensus size: 41
50017587 CATTGAATGT
* * * *
50017597 AAGGGGTTGCTAAGTGCAGATTACCTGAATCACTGATCAAA
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAATAACTGATCAAA
*
50017638 AAGGGGTTGCTAAGTG-TAGATTCCCCGAAAAACTGATCAAA
1 AAGGGGTTGCTAAGTGCT-GATTCCCCGAATAACTGATCAAA
* *
50017679 AAGGGGTTGCTAAGTGCAGATTCCCC-AA-AACTCTGATAAAA
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAATAA--CTGATCAAA
* * * *
50017720 AAGGGGTTGCTAAGTGCTGATTCCCCGAATTATTAATTC-TA
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAATAACTGA-TCAAA
50017761 AAGGTGGTTGCTAAGTGCTGATTCC
1 AAGG-GGTTGCTAAGTGCTGATTCC
50017786 ACTGTATCCT
Statistics
Matches: 127, Mismatches: 13, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
39 2 0.02
40 2 0.02
41 99 0.78
42 23 0.18
43 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.26
Consensus pattern (41 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGAATAACTGATCAAA
Found at i:50017764 original size:82 final size:82
Alignment explanation
Indices: 50017597--50017785 Score: 229
Period size: 82 Copynumber: 2.3 Consensus size: 82
50017587 CATTGAATGT
* ** * *
50017597 AAGGGGTTGCTAAGTGCAGATTACCTGAATCACTGATCAAAAAGGGGTTGCTAAGTGTAGATTCC
1 AAGGGGTTGCTAAGTGCAGATTCCCCAAAACACTGATAAAAAAGGGGTTGCTAAGTGTAGATTCC
*
50017662 CCGAAAAACTGATCAAA
66 CCGAAAAACTAATCAAA
*
50017679 AAGGGGTTGCTAAGTGCAGATTCCCCAAAACTCTGATAAAAAAGGGGTTGCTAAGTGCT-GATTC
1 AAGGGGTTGCTAAGTGCAGATTCCCCAAAACACTGATAAAAAAGGGGTTGCTAAGTG-TAGATTC
** * *
50017743 CCCGAATTATTAATTC-TA
65 CCCGAAAAACTAA-TCAAA
*
50017761 AAGGTGGTTGCTAAGTGCTGATTCC
1 AAGG-GGTTGCTAAGTGCAGATTCC
50017786 ACTGTATCCT
Statistics
Matches: 92, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
82 70 0.76
83 22 0.24
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.26
Consensus pattern (82 bp):
AAGGGGTTGCTAAGTGCAGATTCCCCAAAACACTGATAAAAAAGGGGTTGCTAAGTGTAGATTCC
CCGAAAAACTAATCAAA
Found at i:50017869 original size:41 final size:40
Alignment explanation
Indices: 50017590--50017874 Score: 166
Period size: 41 Copynumber: 6.9 Consensus size: 40
50017580 TGGGATTCAT
* * * *
50017590 TGAATGTAAGGGGTTGCTAAGTGCAGATTACCTGAATCAC
1 TGAATATAAGGGGTTGCTAAGTGCTGATTCCCCGAATCAC
* **
50017630 TG-ATCAAAAAGGGGTTGCTAAGTG-TAGATTCCCCGAAAAAC
1 TGAAT--ATAAGGGGTTGCTAAGTGCT-GATTCCCCGAATCAC
* * * * *
50017671 TG-ATCAAAAAGGGGTTGCTAAGTGCAGATTCCCCAAAACTC
1 TGAAT--ATAAGGGGTTGCTAAGTGCTGATTCCCCGAATCAC
* * *
50017712 TGATAAAAAAGGGGTTGCTAAGTGCTGATTCCCCGAATTA-
1 TGA-ATATAAGGGGTTGCTAAGTGCTGATTCCCCGAATCAC
* * * *
50017752 TTAATTCTAAAGGTGGTTGCTAAGTGCTGATTCCACTGTATC-C
1 TGAA-TAT-AAGG-GGTTGCTAAGTGCTGATTCC-CCGAATCAC
* * ** * * *
50017795 TTGATTGTGAAAGGATTTGTTATGTGCTGATTCCCCGTATCAC
1 -TGAATAT--AAGGGGTTGCTAAGTGCTGATTCCCCGAATCAC
50017838 TGAATATAAGGTGGTTGCTAAGTGCTGATTCCACCGA
1 TGAATATAAGG-GGTTGCTAAGTGCTGATTCC-CCGA
50017875 GTAACGGTTA
Statistics
Matches: 190, Mismatches: 39, Indels: 30
0.73 0.15 0.12
Matches are distributed among these distances:
39 3 0.02
40 8 0.04
41 114 0.60
42 34 0.18
43 24 0.13
44 7 0.04
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.29
Consensus pattern (40 bp):
TGAATATAAGGGGTTGCTAAGTGCTGATTCCCCGAATCAC
Found at i:50022406 original size:14 final size:14
Alignment explanation
Indices: 50022387--50022413 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
50022377 ATGGTCCAAT
50022387 TGAACTGAACCGAG
1 TGAACTGAACCGAG
50022401 TGAACTGAACCGA
1 TGAACTGAACCGA
50022414 CCAAGAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.22, G:0.26, T:0.15
Consensus pattern (14 bp):
TGAACTGAACCGAG
Found at i:50027077 original size:46 final size:46
Alignment explanation
Indices: 50026969--50027077 Score: 136
Period size: 46 Copynumber: 2.3 Consensus size: 46
50026959 TTCAGAGATG
50026969 TATGATGTCTATTTTTACTGACATGGTTGAGAAATATTTGGAAGTTTT
1 TATGATGTCTA-TTTTACTGACATGGTTGAGAAATATTTGG-AGTTTT
*
50027017 TATGGATG-AT-TTTTACTGACATGGTTGAGAAATATTT-G-GTTTAT
1 TAT-GATGTCTATTTTACTGACATGGTTGAGAAATATTTGGAGTTT-T
50027061 CTATGATGTCTATTTTA
1 -TATGATGTCTATTTTA
50027078 TGGATGATGT
Statistics
Matches: 54, Mismatches: 2, Indels: 12
0.79 0.03 0.18
Matches are distributed among these distances:
43 4 0.07
44 5 0.09
45 5 0.09
46 32 0.59
48 4 0.07
49 4 0.07
ACGTcount: A:0.27, C:0.06, G:0.20, T:0.47
Consensus pattern (46 bp):
TATGATGTCTATTTTACTGACATGGTTGAGAAATATTTGGAGTTTT
Found at i:50030169 original size:16 final size:16
Alignment explanation
Indices: 50030148--50030180 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
50030138 AGCTGTTAAT
*
50030148 TTTTACAGAAAAGAGG
1 TTTTACAAAAAAGAGG
50030164 TTTTACAAAAAAGAGG
1 TTTTACAAAAAAGAGG
50030180 T
1 T
50030181 GGTAAGACCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.45, C:0.06, G:0.21, T:0.27
Consensus pattern (16 bp):
TTTTACAAAAAAGAGG
Found at i:50030266 original size:25 final size:25
Alignment explanation
Indices: 50030214--50030266 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
50030204 ATTTTAATTT
* * *
50030214 ATTATCTAATTTTTTAATTTATTGA
1 ATTATCTAATATTTTAATTAATTAA
50030239 ATTAT-TAATATTTTATATTAATTAA
1 ATTATCTAATATTTTA-ATTAATTAA
50030264 ATT
1 ATT
50030267 TTTGAGAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 9 0.38
25 15 0.62
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (25 bp):
ATTATCTAATATTTTAATTAATTAA
Found at i:50036441 original size:36 final size:36
Alignment explanation
Indices: 50036369--50036445 Score: 111
Period size: 37 Copynumber: 2.1 Consensus size: 36
50036359 TTATTACGAA
* *
50036369 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATC-G
*
50036406 GTCTTACCCGGACAAAAT-TCCACACGTAGTCATCG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCG
50036441 GTCTT
1 GTCTT
50036446 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
35 6 0.16
36 14 0.38
37 17 0.46
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (36 bp):
GTCTTACCCGGACAAAATCTCCACACGAAGTCATCG
Found at i:50036642 original size:47 final size:47
Alignment explanation
Indices: 50036564--50037106 Score: 845
Period size: 47 Copynumber: 11.4 Consensus size: 47
50036554 CCCTTCGGGA
* * * * * * *
50036564 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50036611 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50036658 CTTATCACATATATACACTTTCACA-TCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50036704 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50036751 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50036798 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50036845 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50036892 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50036939 CTTATCACATATATACACTTTCACATTCATCACATCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTT--CA--CAT----TCATCACATCGGCCATTAGGC
50036994 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50037041 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50037088 CTTATCACATATATACACT
1 CTTATCACATATATACACT
50037107 GTCTTGGCTG
Statistics
Matches: 467, Mismatches: 20, Indels: 18
0.92 0.04 0.04
Matches are distributed among these distances:
46 45 0.10
47 371 0.79
49 2 0.00
51 6 0.01
53 2 0.00
55 41 0.09
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:50037044 original size:149 final size:150
Alignment explanation
Indices: 50036818--50037106 Score: 553
Period size: 149 Copynumber: 1.9 Consensus size: 150
50036808 ATATACACTT
50036818 TCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGG
1 TCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGG
50036883 CCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
66 CCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
50036948 TATATACACTTTCACATTCA
131 TATATACACTTTCACATTCA
*
50036968 TCACA-TCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGG
1 TCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGG
*
50037032 CCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACA
66 CCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
50037097 TATATACACT
131 TATATACACT
50037107 GTCTTGGCTG
Statistics
Matches: 137, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
149 132 0.96
150 5 0.04
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.32
Consensus pattern (150 bp):
TCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGG
CCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
TATATACACTTTCACATTCA
Found at i:50043465 original size:5 final size:5
Alignment explanation
Indices: 50043457--50043481 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
50043447 TTAAAACACC
50043457 AATAA AATAA AATAA AATAA AATAA
1 AATAA AATAA AATAA AATAA AATAA
50043482 GAGCGCACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AATAA
Found at i:50048635 original size:31 final size:31
Alignment explanation
Indices: 50048597--50048659 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
50048587 AGTTGGTAAG
50048597 TTAATTTACTTATCACATACAAGGCTAGACA
1 TTAATTTACTTATCACATACAAGGCTAGACA
50048628 TTAATTTACTTATCACATACAAGGCTAGACA
1 TTAATTTACTTATCACATACAAGGCTAGACA
50048659 T
1 T
50048660 GGCTTTTGCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (31 bp):
TTAATTTACTTATCACATACAAGGCTAGACA
Found at i:50060467 original size:14 final size:15
Alignment explanation
Indices: 50060440--50060472 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
50060430 CATCCATTAA
50060440 TTTTCCTTTCTTTTT
1 TTTTCCTTTCTTTTT
50060455 TTTTCCTTT-TTTTT
1 TTTTCCTTTCTTTTT
50060469 TTTT
1 TTTT
50060473 GCTCCAAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (15 bp):
TTTTCCTTTCTTTTT
Found at i:50064390 original size:30 final size:30
Alignment explanation
Indices: 50064354--50064414 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
50064344 TTTAAAGAAT
50064354 TAAATGATAATAAGCTCGGAAGGATGATTA
1 TAAATGATAATAAGCTCGGAAGGATGATTA
*
50064384 TAAATGATAATAAGCTTGGAAGGATGATTA
1 TAAATGATAATAAGCTCGGAAGGATGATTA
50064414 T
1 T
50064415 TCTAACACTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.43, C:0.05, G:0.23, T:0.30
Consensus pattern (30 bp):
TAAATGATAATAAGCTCGGAAGGATGATTA
Found at i:50070452 original size:184 final size:184
Alignment explanation
Indices: 50070136--50070502 Score: 698
Period size: 184 Copynumber: 2.0 Consensus size: 184
50070126 ACTACATGAA
50070136 TATCTGCAGGATTAGAAGGTATATTGGTTGCTATATATGCATTCAATTAAGGTTTAACAATACCT
1 TATCTGCAGGATTAGAAGGTATATTGGTTGCTATATATGCATTCAATTAAGGTTTAACAATACCT
*
50070201 GCCTTGCCACATGTGACCATAGGGTGTGTATTAGTTGGTATAGAAATTGGACTTTGAGGAACAGG
66 GCCTTGCCACATGTGACCATAGGGTGTGTATTAGTTGGTATAGAAATAGGACTTTGAGGAACAGG
50070266 TATAAAAATTTAATTTTGTGGTGAAGTTATAAAAACTTGATTTTATGAAGAAGT
131 TATAAAAATTTAATTTTGTGGTGAAGTTATAAAAACTTGATTTTATGAAGAAGT
* *
50070320 TATCTGTAGGATTAGAAGGTATATTGGTTGCTATATATGCATTCAATTAAGGTTTAATAATACCT
1 TATCTGCAGGATTAGAAGGTATATTGGTTGCTATATATGCATTCAATTAAGGTTTAACAATACCT
50070385 GCCTTGCCACATGTGACCATAGGGTGTGTATTAGTTGGTATAGAAATAGGACTTTGAGGAACAGG
66 GCCTTGCCACATGTGACCATAGGGTGTGTATTAGTTGGTATAGAAATAGGACTTTGAGGAACAGG
*
50070450 TATAAAAATTTAATTTTGTGGTGAAGTTATAAAAACTTGATTTTGTGAAGAAG
131 TATAAAAATTTAATTTTGTGGTGAAGTTATAAAAACTTGATTTTATGAAGAAG
50070503 GTAAAGAATA
Statistics
Matches: 179, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
184 179 1.00
ACGTcount: A:0.33, C:0.09, G:0.23, T:0.35
Consensus pattern (184 bp):
TATCTGCAGGATTAGAAGGTATATTGGTTGCTATATATGCATTCAATTAAGGTTTAACAATACCT
GCCTTGCCACATGTGACCATAGGGTGTGTATTAGTTGGTATAGAAATAGGACTTTGAGGAACAGG
TATAAAAATTTAATTTTGTGGTGAAGTTATAAAAACTTGATTTTATGAAGAAGT
Found at i:50070529 original size:54 final size:54
Alignment explanation
Indices: 50070462--50070596 Score: 168
Period size: 54 Copynumber: 2.5 Consensus size: 54
50070452 TAAAAATTTA
* *
50070462 ATTTTGTGGTGAAGTTATAAAAACTTGATTTTGTGAAGAAGGTAAAGAATA-TTG
1 ATTTTGTGATGAAGGTATAAAAACTTGATTTTGTGAAGAAGGTAAAGAA-ACTTG
* * *
50070516 ATTTTGTGATGAAGGTATGGAAAA-TTGATTTTGTGAATAAGGTATAGAAACTTG
1 ATTTTGTGATGAAGGTAT-AAAAACTTGATTTTGTGAAGAAGGTAAAGAAACTTG
*
50070570 ATTTTGT-AGTGAAGGTATAGAAACTTG
1 ATTTTGTGA-TGAAGGTATAAAAACTTG
50070597 TGAAGGCAAC
Statistics
Matches: 70, Mismatches: 7, Indels: 8
0.82 0.08 0.09
Matches are distributed among these distances:
53 5 0.07
54 61 0.87
55 4 0.06
ACGTcount: A:0.36, C:0.02, G:0.25, T:0.37
Consensus pattern (54 bp):
ATTTTGTGATGAAGGTATAAAAACTTGATTTTGTGAAGAAGGTAAAGAAACTTG
Found at i:50070584 original size:27 final size:26
Alignment explanation
Indices: 50070447--50070596 Score: 142
Period size: 27 Copynumber: 5.6 Consensus size: 26
50070437 TTTGAGGAAC
* * *
50070447 AGGTATAAAAATTTAATTTTGTGGTGA
1 AGGTATAGAAACTTGATTTTGT-GTGA
* * *
50070474 AGTTATAAAAACTTGATTTTGTGAAGA
1 AGGTATAGAAACTTGATTTTGTG-TGA
*
50070501 AGGTAAAGAATA-TTGATTTTGTGATGA
1 AGGTATAGAA-ACTTGATTTTGTG-TGA
* *
50070528 AGGTATGGAAAATTGATTTTGTGAAT-A
1 AGGTATAGAAACTTGATTTTGTG--TGA
50070555 AGGTATAGAAACTTGATTTTGTAGTGA
1 AGGTATAGAAACTTGATTTTGT-GTGA
50070582 AGGTATAGAAACTTG
1 AGGTATAGAAACTTG
50070597 TGAAGGCAAC
Statistics
Matches: 105, Mismatches: 12, Indels: 12
0.81 0.09 0.09
Matches are distributed among these distances:
26 3 0.03
27 98 0.93
28 4 0.04
ACGTcount: A:0.37, C:0.02, G:0.24, T:0.37
Consensus pattern (26 bp):
AGGTATAGAAACTTGATTTTGTGTGA
Found at i:50074412 original size:27 final size:27
Alignment explanation
Indices: 50074382--50074454 Score: 65
Period size: 27 Copynumber: 2.7 Consensus size: 27
50074372 CTATGTTTAG
*
50074382 TGTCCCGTCGGACTATCCTGTGGTTAA
1 TGTCCCGTCGGACTATCCCGTGGTTAA
*** * *
50074409 TGTCTTATTGGACTATCCCGTGTTTAA
1 TGTCCCGTCGGACTATCCCGTGGTTAA
* * *
50074436 CGTACCGTCAGACTATCCC
1 TGTCCCGTCGGACTATCCC
50074455 CGATGTTGTA
Statistics
Matches: 33, Mismatches: 13, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.18, C:0.27, G:0.21, T:0.34
Consensus pattern (27 bp):
TGTCCCGTCGGACTATCCCGTGGTTAA
Found at i:50074709 original size:45 final size:45
Alignment explanation
Indices: 50074625--50074776 Score: 173
Period size: 45 Copynumber: 3.4 Consensus size: 45
50074615 TATGGTATTA
* ** *
50074625 AGCTATGGTCTTACTCAT-TTCTATCAG-GATGGCAAAGCATCTTTC
1 AGCTATGGTCTTACTCATCTT-TAT-GGTGATACCATAGCATCTTTC
* * * *
50074670 AACTATGGTTTTACTCATCTTTATGGTGATGCCATAGCATCTTTT
1 AGCTATGGTCTTACTCATCTTTATGGTGATACCATAGCATCTTTC
* *
50074715 AGCTATGGTCTTACACATCTTTATGGTGATACCATAGCATTTTTC
1 AGCTATGGTCTTACTCATCTTTATGGTGATACCATAGCATCTTTC
*
50074760 AGCTAAGGTCTTACTCA
1 AGCTATGGTCTTACTCA
50074777 ATTTAAATGT
Statistics
Matches: 91, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
44 1 0.01
45 88 0.97
46 2 0.02
ACGTcount: A:0.24, C:0.20, G:0.16, T:0.39
Consensus pattern (45 bp):
AGCTATGGTCTTACTCATCTTTATGGTGATACCATAGCATCTTTC
Found at i:50076455 original size:43 final size:42
Alignment explanation
Indices: 50076348--50076457 Score: 118
Period size: 42 Copynumber: 2.6 Consensus size: 42
50076338 GATTTGAGAT
50076348 TTACATGTAAGACCATGTCTGGGACATCGGCATCGTATACGA
1 TTACATGTAAGACCATGTCTGGGACATCGGCATCGTATACGA
* * * *
50076390 TTTCGTGTAAGACTC-TGTCTGGGATAGT-GGCATCG-ATAGTTGA
1 TTACATGTAAGAC-CATGTCTGGGACA-TCGGCATCGTATA--CGA
*
50076433 TTACATGTAAGACCACGTCTGGGAC
1 TTACATGTAAGACCATGTCTGGGAC
50076458 GTTGGCATTG
Statistics
Matches: 55, Mismatches: 8, Indels: 9
0.76 0.11 0.12
Matches are distributed among these distances:
41 3 0.05
42 29 0.53
43 23 0.42
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.29
Consensus pattern (42 bp):
TTACATGTAAGACCATGTCTGGGACATCGGCATCGTATACGA
Found at i:50076464 original size:43 final size:42
Alignment explanation
Indices: 50076309--50076465 Score: 115
Period size: 43 Copynumber: 3.7 Consensus size: 42
50076299 TGTGATTTTG
* * * *
50076309 TGTAAGACCGCATCTAGGACGTTGGCGTCGAT-TTGAGATTTACA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATT--GA-TTACA
* * * * * *
50076353 TGTAAGACCATGTCTGGGACATCGGCATCG-TATACGATTTCG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATAT-TGATTACA
* *
50076395 TGTAAGACTC-TGTCTGGGATAG-TGGCATCGATAGTTGATTACA
1 TGTAAGAC-CACGTCTGGGA-CGTTGGCATCGATA-TTGATTACA
50076438 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
50076466 TGTAAGAGCT
Statistics
Matches: 87, Mismatches: 18, Indels: 17
0.71 0.15 0.14
Matches are distributed among these distances:
42 29 0.33
43 33 0.38
44 25 0.29
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.29
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATTGATTACA
Found at i:50080899 original size:43 final size:44
Alignment explanation
Indices: 50080846--50080928 Score: 125
Period size: 44 Copynumber: 1.9 Consensus size: 44
50080836 ACATGGTTTT
50080846 CGACAAGATCGTGTGACGC-T-ATTTCGAATTGCACACGGTCTAG
1 CGACAAGATCGTGTGAC-CTTAATTTCGAATTGCACACGGTCTAG
* *
50080889 CGACACGATCGTGTGACCTTAATTTCGAATTGTACACGGT
1 CGACAAGATCGTGTGACCTTAATTTCGAATTGCACACGGT
50080929 TTGGCCACAC
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
42 1 0.03
43 17 0.47
44 18 0.50
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.28
Consensus pattern (44 bp):
CGACAAGATCGTGTGACCTTAATTTCGAATTGCACACGGTCTAG
Found at i:50084558 original size:3 final size:3
Alignment explanation
Indices: 50084550--50084631 Score: 94
Period size: 3 Copynumber: 27.3 Consensus size: 3
50084540 TTTCTATCAT
* * * * *
50084550 TTC TTC TTC TTC TAC TAC TTC TAC TTC TAC TT- TGTC TTC TTT TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T-TC TTC TTC TTC
*
50084595 TTC TTC TTC TTC TTC TTC TTC TTC TTT TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
50084632 CAAAGAGCAA
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
2 1 0.01
3 65 0.97
4 1 0.01
ACGTcount: A:0.05, C:0.29, G:0.01, T:0.65
Consensus pattern (3 bp):
TTC
Found at i:50085649 original size:3 final size:3
Alignment explanation
Indices: 50085641--50085676 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
50085631 TGGGTTGAAG
*
50085641 GAA GAA GAA GAA GAA GAA GAA GAA TAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
50085677 ACAACAGAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.67, C:0.00, G:0.31, T:0.03
Consensus pattern (3 bp):
GAA
Found at i:50091358 original size:15 final size:14
Alignment explanation
Indices: 50091337--50091372 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
50091327 ATAATTCTTA
*
50091337 ATAATTATCTTAAT
1 ATAATTATCCTAAT
50091351 ATTAATTATCCTAAT
1 A-TAATTATCCTAAT
50091366 ATAATTA
1 ATAATTA
50091373 AAATAGAGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.47
Consensus pattern (14 bp):
ATAATTATCCTAAT
Found at i:50093383 original size:18 final size:18
Alignment explanation
Indices: 50093360--50093394 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
50093350 ACGATGTGTC
50093360 AAACTATATTCATGCTTG
1 AAACTATATTCATGCTTG
* *
50093378 AAACTATTTTGATGCTT
1 AAACTATATTCATGCTT
50093395 ACAGTTCTTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.14, G:0.11, T:0.43
Consensus pattern (18 bp):
AAACTATATTCATGCTTG
Found at i:50093549 original size:55 final size:55
Alignment explanation
Indices: 50093485--50093706 Score: 212
Period size: 55 Copynumber: 3.9 Consensus size: 55
50093475 CGTGCTACGT
* * *
50093485 AACAATCGATTTAAACATATAAAAAATCAATTCAAAATAAGTAGTA-TTCTAACAT
1 AACAATCGATTTAAACATATAAAAAATCGATTCAAAAGAAGTAGTATTTC-AACAG
* ** * *
50093540 AATAATCGATTTAAATGTATAAACAATCGATTCAAAAGCAGTAGTATTTCAACAG
1 AACAATCGATTTAAACATATAAAAAATCGATTCAAAAGAAGTAGTATTTCAACAG
* * * * * *
50093595 AACAATCAATTTAAACATATAAAAAATTGATTCAAAAGAAGAAGAAGAAGAAGTATTCCACCAT
1 AACAATCGATTTAAACATATAAAAAATCGATTC--------AA-AAGAAGTAGTATTTCAACAG
*
50093659 AACAATCGATTTAAACATATAAAAAATCGATTCAAAAGAAGTAATATT
1 AACAATCGATTTAAACATATAAAAAATCGATTCAAAAGAAGTAGTATT
50093707 CCACAAATTA
Statistics
Matches: 134, Mismatches: 23, Indels: 20
0.76 0.13 0.11
Matches are distributed among these distances:
55 81 0.60
56 5 0.04
63 2 0.01
64 46 0.34
ACGTcount: A:0.52, C:0.12, G:0.09, T:0.27
Consensus pattern (55 bp):
AACAATCGATTTAAACATATAAAAAATCGATTCAAAAGAAGTAGTATTTCAACAG
Found at i:50110268 original size:19 final size:19
Alignment explanation
Indices: 50110244--50110283 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
50110234 ATGTTAAAAG
*
50110244 ATACATATAGTATATATCT
1 ATACATATAGTATACATCT
50110263 ATACATATAGTATACATCT
1 ATACATATAGTATACATCT
50110282 AT
1 AT
50110284 GTGGCTAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.42, C:0.12, G:0.05, T:0.40
Consensus pattern (19 bp):
ATACATATAGTATACATCT
Found at i:50111812 original size:20 final size:20
Alignment explanation
Indices: 50111787--50111827 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
50111777 ATCCTTCAAC
* *
50111787 TTAATCTTATTCAGCTTTGT
1 TTAATCTCATTCAACTTTGT
50111807 TTAATCTCATTCAACTTTGT
1 TTAATCTCATTCAACTTTGT
50111827 T
1 T
50111828 CTATTTTACC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.22, C:0.17, G:0.07, T:0.54
Consensus pattern (20 bp):
TTAATCTCATTCAACTTTGT
Found at i:50116607 original size:17 final size:17
Alignment explanation
Indices: 50116580--50116612 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
50116570 TCACTATATT
50116580 TTTATTTCACATATTCAC
1 TTTATTTCACA-ATTCAC
50116598 TTTA-TTCACAATTCA
1 TTTATTTCACAATTCA
50116613 TAAAAATACA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 6 0.40
18 4 0.27
ACGTcount: A:0.30, C:0.21, G:0.00, T:0.48
Consensus pattern (17 bp):
TTTATTTCACAATTCAC
Found at i:50116859 original size:51 final size:51
Alignment explanation
Indices: 50116802--50116902 Score: 184
Period size: 51 Copynumber: 2.0 Consensus size: 51
50116792 TTACTTTTCT
*
50116802 AACACTTTTATATCACTATTCACTTAATTTAAACCTTTAATCACAATATTC
1 AACACTTTTATATCACTATTCACTTAAGTTAAACCTTTAATCACAATATTC
*
50116853 AACACTTTTATATCACTATTCACTTCAGTTAAACCTTTAATCACAATATT
1 AACACTTTTATATCACTATTCACTTAAGTTAAACCTTTAATCACAATATT
50116903 TTGTAACACC
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 48 1.00
ACGTcount: A:0.37, C:0.22, G:0.01, T:0.41
Consensus pattern (51 bp):
AACACTTTTATATCACTATTCACTTAAGTTAAACCTTTAATCACAATATTC
Found at i:50117997 original size:39 final size:39
Alignment explanation
Indices: 50117954--50118046 Score: 150
Period size: 39 Copynumber: 2.4 Consensus size: 39
50117944 CACATTCAGT
** *
50117954 TTTAAGCATATATCACGTTACACATGTAATCACATAACA
1 TTTAAGCATATATCACAATACACATATAATCACATAACA
50117993 TTTAAGCATATATCACAATACACATATAATCACATAACA
1 TTTAAGCATATATCACAATACACATATAATCACATAACA
*
50118032 TTCAAGCATATATCA
1 TTTAAGCATATATCA
50118047 TAGTACTCAA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 50 1.00
ACGTcount: A:0.44, C:0.20, G:0.05, T:0.30
Consensus pattern (39 bp):
TTTAAGCATATATCACAATACACATATAATCACATAACA
Found at i:50120311 original size:33 final size:34
Alignment explanation
Indices: 50120265--50120339 Score: 91
Period size: 33 Copynumber: 2.2 Consensus size: 34
50120255 GCATGGGAGA
*
50120265 TTTCTTTTCTTTTT-TCCATATTTTTCATTTTCCT
1 TTTCTTTTCTTTTTCTCCATATTTTTC-TTTCCCT
* *
50120299 TTTC-TTTCTTTTTCTCCCTCTTTTTCTTTCCCT
1 TTTCTTTTCTTTTTCTCCATATTTTTCTTTCCCT
*
50120332 TTTATTTT
1 TTTCTTTT
50120340 TTGATGACCG
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
33 18 0.51
34 17 0.49
ACGTcount: A:0.05, C:0.24, G:0.00, T:0.71
Consensus pattern (34 bp):
TTTCTTTTCTTTTTCTCCATATTTTTCTTTCCCT
Found at i:50123405 original size:21 final size:19
Alignment explanation
Indices: 50123359--50123412 Score: 65
Period size: 21 Copynumber: 2.8 Consensus size: 19
50123349 CAAATCAGGT
*
50123359 AAAAGAAAGAG-AAATGAA
1 AAAAGAAAGAGAAAAGGAA
*
50123377 AAATGAAAGAGAACAAGGAAA
1 AAAAGAAAGAGAA-AAGG-AA
50123398 AAAAGAAAGAGAAAA
1 AAAAGAAAGAGAAAA
50123413 ATTAAAAGGA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
18 10 0.33
19 1 0.03
20 5 0.17
21 14 0.47
ACGTcount: A:0.72, C:0.02, G:0.22, T:0.04
Consensus pattern (19 bp):
AAAAGAAAGAGAAAAGGAA
Found at i:50123419 original size:21 final size:20
Alignment explanation
Indices: 50123359--50123419 Score: 54
Period size: 21 Copynumber: 3.1 Consensus size: 20
50123349 CAAATCAGGT
*
50123359 AAAAGAAAGAG--AAATGAA
1 AAAAGAAAGAGAAAAATAAA
* **
50123377 AAATGAAAGAGAACAAGGAAA
1 AAAAGAAAGAGAA-AAATAAA
*
50123398 AAAAGAAAGAGAAAAATTAA
1 AAAAGAAAGAGAAAAATAAA
50123418 AA
1 AA
50123420 GGAAATGAGA
Statistics
Matches: 32, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
18 10 0.31
20 6 0.19
21 16 0.50
ACGTcount: A:0.72, C:0.02, G:0.20, T:0.07
Consensus pattern (20 bp):
AAAAGAAAGAGAAAAATAAA
Found at i:50125728 original size:32 final size:30
Alignment explanation
Indices: 50125668--50125781 Score: 97
Period size: 32 Copynumber: 3.6 Consensus size: 30
50125658 GGTTGGTGCA
*
50125668 TATATAATATAA-ATATGTGTGCATGTTTTTGT
1 TATAT-ATATAATATATATG-GCATG-TTTTGT
*
50125700 TATATATATAATATATATGCGCAAGTTTTGT
1 TATATATATAATATATATG-GCATGTTTTGT
* * *
50125731 GT-TATATGTAATATATATAGGCGTGGCTTTGT
1 -TATATATATAATATATAT-GGCAT-GTTTTGT
*
50125763 TATATAGATAATATATATG
1 TATATATATAATATATATG
50125782 TGTGTTGGTT
Statistics
Matches: 68, Mismatches: 9, Indels: 11
0.77 0.10 0.12
Matches are distributed among these distances:
31 31 0.46
32 37 0.54
ACGTcount: A:0.33, C:0.04, G:0.17, T:0.46
Consensus pattern (30 bp):
TATATATATAATATATATGGCATGTTTTGT
Found at i:50125896 original size:22 final size:22
Alignment explanation
Indices: 50125865--50125918 Score: 74
Period size: 22 Copynumber: 2.4 Consensus size: 22
50125855 ATACATATAT
50125865 TATATTATATG-AGTGGGTCTTAC
1 TATA-TATATGCA-TGGGTCTTAC
*
50125888 TATATATATGCATGGGTCTTAT
1 TATATATATGCATGGGTCTTAC
50125910 TATATATAT
1 TATATATAT
50125919 TATAAAATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
22 24 0.83
23 5 0.17
ACGTcount: A:0.30, C:0.07, G:0.17, T:0.46
Consensus pattern (22 bp):
TATATATATGCATGGGTCTTAC
Found at i:50127078 original size:51 final size:51
Alignment explanation
Indices: 50127011--50127119 Score: 137
Period size: 51 Copynumber: 2.1 Consensus size: 51
50127001 TATGATGGAG
* * * *
50127011 TATGAATTGTTATTTTGCATAAACTATTATTCGGTATGAACTGATATTTCA
1 TATGAACTATTATTTTGCATAAACTATCATTCGGTATGAACTGATATTTAA
* * * * *
50127062 TGTGAACTATTATTTTGCATGAGCTATCATTTGGTATGAACTGTTATTTAA
1 TATGAACTATTATTTTGCATAAACTATCATTCGGTATGAACTGATATTTAA
50127113 TATGAAC
1 TATGAAC
50127120 AAATGTTTAT
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
51 48 1.00
ACGTcount: A:0.30, C:0.10, G:0.16, T:0.44
Consensus pattern (51 bp):
TATGAACTATTATTTTGCATAAACTATCATTCGGTATGAACTGATATTTAA
Found at i:50127110 original size:17 final size:17
Alignment explanation
Indices: 50127032--50127110 Score: 61
Period size: 17 Copynumber: 4.6 Consensus size: 17
50127022 ATTTTGCATA
*
50127032 AACTATTATTCGGTATG
1 AACTATTATTTGGTATG
** *
50127049 AACTGA-TATTTCATGTG
1 AACT-ATTATTTGGTATG
* *
50127066 AACTATTATTTTGCATG
1 AACTATTATTTGGTATG
* *
50127083 AGCTATCATTTGGTATG
1 AACTATTATTTGGTATG
*
50127100 AACTGTTATTT
1 AACTATTATTT
50127111 AATATGAACA
Statistics
Matches: 45, Mismatches: 15, Indels: 4
0.70 0.23 0.06
Matches are distributed among these distances:
16 1 0.02
17 43 0.96
18 1 0.02
ACGTcount: A:0.28, C:0.11, G:0.16, T:0.44
Consensus pattern (17 bp):
AACTATTATTTGGTATG
Found at i:50128797 original size:101 final size:101
Alignment explanation
Indices: 50128575--50128778 Score: 338
Period size: 101 Copynumber: 2.0 Consensus size: 101
50128565 ATGCATTTGT
50128575 ATCATTCAAGAGCATATGCATGTAGTTATTTTAGTCACGAAACTATAATCATATTTTATTGATAT
1 ATCATTCAAGAGCATATGCATGTAGTTATTTTAGTCACGAAACTATAATCATATTTTATTGATAT
* *
50128640 CGTAATAACATTTGCAGTTGTTTATGAAGCATTCGC
66 CATAATAACATTTGCAGCTGTTTATGAAGCATTCGC
* * *
50128676 ATCATTCAAGAGCATATGCATGTGGTTATTTTAGTCATGAAACTATAATCATATTTTATTGTTAT
1 ATCATTCAAGAGCATATGCATGTAGTTATTTTAGTCACGAAACTATAATCATATTTTATTGATAT
*
50128741 CATAATAACATTTGCA-CTGCTTTATGAAGCATTTGC
66 CATAATAACATTTGCAGCTG-TTTATGAAGCATTCGC
50128777 AT
1 AT
50128779 TATCTTGGAT
Statistics
Matches: 96, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
100 2 0.02
101 94 0.98
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.40
Consensus pattern (101 bp):
ATCATTCAAGAGCATATGCATGTAGTTATTTTAGTCACGAAACTATAATCATATTTTATTGATAT
CATAATAACATTTGCAGCTGTTTATGAAGCATTCGC
Found at i:50129271 original size:90 final size:89
Alignment explanation
Indices: 50129045--50129344 Score: 286
Period size: 90 Copynumber: 3.3 Consensus size: 89
50129035 TTCTGAAATC
* * * *
50129045 CTGGTTTCGCCTAGTAAGTCCTTTCAAATTCTGGTTCCACCCAAGTTCATTTCGAGATTTATAGT
1 CTGGTTTTGCCTAGTAAGTCCTTTCAAATTCTGGTTTCACCCAGGTTC-TTTCGAAATTTATAGT
* *
50129110 TTCT-CCCAAGTCCATTATCAAAGTT
65 TT-TGCCCAAGTCCATTGTCGAAGTT
* * * *
50129135 ATGGTTTCAT-CC-AGTAAGTCCTTTCAAATTCTTG-TTCGGCCCAGGTT-TGTTCTGAAAGTTA
1 CTGGTTT--TGCCTAGTAAGTCCTTTCAAATTCTGGTTTC-ACCCAGGTTCT-TTC-GAAATTTA
50129196 TAGTTTTGCCCAAGTCCATTGTCGAAGTT
61 TAGTTTTGCCCAAGTCCATTGTCGAAGTT
** * * * *
50129225 CTGGTTTTGCCTAGTAAGTCCTTTCAAATTCTGGTTTCTTCTAGGTTCTTTCCAATATTTCTGGT
1 CTGGTTTTGCCTAGTAAGTCCTTTCAAATTCTGGTTTCACCCAGGTTCTTTCGAA-ATTTATAGT
* * * * *
50129290 TCTGCCTAGGTCCGTTGTTGAAGTT
65 TTTGCCCAAGTCCATTGTCGAAGTT
* *
50129315 TTGGTTTTGCCTAGTAAGTCCTTTGAAATT
1 CTGGTTTTGCCTAGTAAGTCCTTTCAAATT
50129345 TTGATTTCGC
Statistics
Matches: 173, Mismatches: 26, Indels: 22
0.78 0.12 0.10
Matches are distributed among these distances:
88 2 0.01
89 10 0.06
90 155 0.90
91 6 0.03
ACGTcount: A:0.20, C:0.21, G:0.18, T:0.41
Consensus pattern (89 bp):
CTGGTTTTGCCTAGTAAGTCCTTTCAAATTCTGGTTTCACCCAGGTTCTTTCGAAATTTATAGTT
TTGCCCAAGTCCATTGTCGAAGTT
Found at i:50129377 original size:90 final size:90
Alignment explanation
Indices: 50129209--50129413 Score: 222
Period size: 90 Copynumber: 2.3 Consensus size: 90
50129199 TTTTGCCCAA
* * * *
50129209 GTCCATTGTCGAAGTTCTGGTTTTGCCTAGTAAGTCCTTTCAAATTCTGGTTTCTTCTAGGTTCT
1 GTCCATTGTCGAAGTTTTGGTTTTGCCTAGTAAGTCCTTTCAAATTCTGATTTCCTCTAGCTTCT
* *
50129274 TTCCAATATTTCTGGTTCTGC-C-TAG
66 TTCCAATAGTTCTGGTT-T-CACACAG
* * * *
50129299 GTCCGTTGTTGAAGTTTTGGTTTTGCCTAGTAAGTCCTTTGAAATTTTGATTTCGCTC-A-CTTC
1 GTCCATTGTCGAAGTTTTGGTTTTGCCTAGTAAGTCCTTTCAAATTCTGATTTC-CTCTAGCTTC
* *
50129362 TATTGTCGA-AGTTCTGGTTTCACACAG
65 T-TT-CCAATAGTTCTGGTTTCACACAG
50129389 GTCCATTGTCGAAGTTTTGGTTTTG
1 GTCCATTGTCGAAGTTTTGGTTTTG
50129414 TCCAGGTCCA
Statistics
Matches: 96, Mismatches: 14, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
88 1 0.01
89 6 0.06
90 85 0.89
91 4 0.04
ACGTcount: A:0.16, C:0.19, G:0.21, T:0.44
Consensus pattern (90 bp):
GTCCATTGTCGAAGTTTTGGTTTTGCCTAGTAAGTCCTTTCAAATTCTGATTTCCTCTAGCTTCT
TTCCAATAGTTCTGGTTTCACACAG
Found at i:50129442 original size:30 final size:30
Alignment explanation
Indices: 50129363--50129448 Score: 118
Period size: 30 Copynumber: 2.9 Consensus size: 30
50129353 GCTCACTTCT
* ** *
50129363 ATTGTCGAAGTTCTGGTTTCACACAGGTCC
1 ATTGTCGAAGTTTTGGTTTTGCCCAGGTCC
*
50129393 ATTGTCGAAGTTTTGGTTTTGTCCAGGTCC
1 ATTGTCGAAGTTTTGGTTTTGCCCAGGTCC
*
50129423 ATTGTTGAAGTTTTGGTTTTGCCCAG
1 ATTGTCGAAGTTTTGGTTTTGCCCAG
50129449 TAACTCCTTC
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 49 1.00
ACGTcount: A:0.16, C:0.17, G:0.26, T:0.41
Consensus pattern (30 bp):
ATTGTCGAAGTTTTGGTTTTGCCCAGGTCC
Found at i:50129560 original size:30 final size:30
Alignment explanation
Indices: 50129520--50129590 Score: 76
Period size: 29 Copynumber: 2.4 Consensus size: 30
50129510 TTAATTCTCG
50129520 AATTTCTGGTTTTAC-CCAGGTCCA-TTGTCA
1 AATTT-TGGTTTT-CGCCAGGTCCATTTGTCA
* *
50129550 AAGTTTTGG-TTTCGCCAGGTCTATTTTTCA
1 AA-TTTTGGTTTTCGCCAGGTCCATTTGTCA
50129580 AATTTTGGTTT
1 AATTTTGGTTT
50129591 CGTCCAGTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
28 1 0.03
29 17 0.49
30 14 0.40
31 3 0.09
ACGTcount: A:0.18, C:0.17, G:0.18, T:0.46
Consensus pattern (30 bp):
AATTTTGGTTTTCGCCAGGTCCATTTGTCA
Found at i:50129569 original size:29 final size:30
Alignment explanation
Indices: 50129535--50129597 Score: 85
Period size: 29 Copynumber: 2.1 Consensus size: 30
50129525 CTGGTTTTAC
50129535 CCAGGTCCA-TTGTCAAAGTTTTGGTTTCG-
1 CCAGGTCCATTTGTCAAA-TTTTGGTTTCGT
* *
50129564 CCAGGTCTATTTTTCAAATTTTGGTTTCGT
1 CCAGGTCCATTTGTCAAATTTTGGTTTCGT
50129594 CCAG
1 CCAG
50129598 TAAGTCTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
29 19 0.63
30 11 0.37
ACGTcount: A:0.17, C:0.21, G:0.21, T:0.41
Consensus pattern (30 bp):
CCAGGTCCATTTGTCAAATTTTGGTTTCGT
Found at i:50129944 original size:78 final size:78
Alignment explanation
Indices: 50129856--50129999 Score: 175
Period size: 78 Copynumber: 1.8 Consensus size: 78
50129846 GTCAAACTTG
* * * * *
50129856 TTTTCAAAAATAGGTTGAGCCTGGGGATTGTTATTGAA-GCCCTTTTAGTGTTTTTTCA-TTTTA
1 TTTTCAAAAATAGGTTGAACCTCGAGATTG-TAGTCAAGGCCCTTTTAGT-TTTTTTCATTTTTA
50129919 TTAGGGTTGAATTCA
64 TTAGGGTTGAATTCA
* * * *
50129934 TTTTCGAAAATGGGTTGAACCTCGAGATTGTCGTCAAGGTCCTTTTAGTTTTTTTCATTTTTATT
1 TTTTCAAAAATAGGTTGAACCTCGAGATTGTAGTCAAGGCCCTTTTAGTTTTTTTCATTTTTATT
50129999 A
66 A
50130000 AAAGTTAAAT
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
77 12 0.22
78 43 0.78
ACGTcount: A:0.22, C:0.12, G:0.20, T:0.46
Consensus pattern (78 bp):
TTTTCAAAAATAGGTTGAACCTCGAGATTGTAGTCAAGGCCCTTTTAGTTTTTTTCATTTTTATT
AGGGTTGAATTCA
Found at i:50130056 original size:79 final size:77
Alignment explanation
Indices: 50129896--50130063 Score: 185
Period size: 79 Copynumber: 2.1 Consensus size: 77
50129886 TTATTGAAGC
** * * * * * *
50129896 CCTTTTAGTGTTTTTTCATTTTATTAGGGTTGAATTCATTTTCGAAAATGGGTTGAACCTCGAGA
1 CCTTTTAGT-TTTTTTCATTTTATTAAAGTTAAATCCATTTCCAAAAATGGATTCAACCTCGAGA
50129961 TTGTCGTCAAGGT
65 TTGTCGTCAAGGT
* *
50129974 CCTTTTAGTTTTTTTCATTTTTATTAAAAGTTAAATCCATTTCCAAAAATGGATTCAGCCTTGAG
1 CCTTTTAGTTTTTTTCA-TTTTATT-AAAGTTAAATCCATTTCCAAAAATGGATTCAACCTCGAG
* *
50130039 ATTG-CAGTCGAGTT
64 ATTGTC-GTCAAGGT
50130053 CCTTTTAGTTT
1 CCTTTTAGTTT
50130064 GATTTTGTCA
Statistics
Matches: 75, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
77 8 0.11
78 17 0.23
79 50 0.67
ACGTcount: A:0.24, C:0.14, G:0.17, T:0.45
Consensus pattern (77 bp):
CCTTTTAGTTTTTTTCATTTTATTAAAGTTAAATCCATTTCCAAAAATGGATTCAACCTCGAGAT
TGTCGTCAAGGT
Found at i:50132113 original size:16 final size:15
Alignment explanation
Indices: 50132088--50132118 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
50132078 CCCATATTAG
50132088 TTTTTTTTATAAAAT
1 TTTTTTTTATAAAAT
50132103 TTTTATTTTATAAAAT
1 TTTT-TTTTATAAAAT
50132119 AAATTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (15 bp):
TTTTTTTTATAAAAT
Found at i:50133020 original size:32 final size:32
Alignment explanation
Indices: 50132979--50133043 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
50132969 AAACTTCATA
*
50132979 ATCTGCAAGGGAGAGGGAAAGAGAGATTTCTT
1 ATCTGCAAGGGAGAGGAAAAGAGAGATTTCTT
50133011 ATCTGCAAGGGAGAGGAAAAGAGAGATTTCTT
1 ATCTGCAAGGGAGAGGAAAAGAGAGATTTCTT
50133043 A
1 A
50133044 CCTGAGTTGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.37, C:0.09, G:0.32, T:0.22
Consensus pattern (32 bp):
ATCTGCAAGGGAGAGGAAAAGAGAGATTTCTT
Found at i:50133394 original size:19 final size:17
Alignment explanation
Indices: 50133355--50133397 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
50133345 ACCTAAAAAT
*
50133355 TAAATATAATTAAAATAA
1 TAAA-ATAATAAAAATAA
50133373 TAAAATAATAAAAAGTATA
1 TAAAATAATAAAAA-TA-A
50133392 TAAAAT
1 TAAAAT
50133398 TGGGTCGAGC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 9 0.41
18 6 0.27
19 7 0.32
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (17 bp):
TAAAATAATAAAAATAA
Found at i:50133826 original size:16 final size:15
Alignment explanation
Indices: 50133801--50133835 Score: 61
Period size: 16 Copynumber: 2.3 Consensus size: 15
50133791 TCTGATGTGA
50133801 GAAAAGTACAGTGTT
1 GAAAAGTACAGTGTT
50133816 GAAATAGTACAGTGTT
1 GAAA-AGTACAGTGTT
50133832 GAAA
1 GAAA
50133836 CAAGCACAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 4 0.21
16 15 0.79
ACGTcount: A:0.43, C:0.06, G:0.26, T:0.26
Consensus pattern (15 bp):
GAAAAGTACAGTGTT
Found at i:50141697 original size:10 final size:9
Alignment explanation
Indices: 50141679--50141721 Score: 50
Period size: 10 Copynumber: 4.4 Consensus size: 9
50141669 GTTAGTGAAC
50141679 AAAATAAAT
1 AAAATAAAT
50141688 AAATATAAAT
1 AAA-ATAAAT
*
50141698 AAACATATAT
1 AAA-ATAAAT
50141708 AAAATAAAAT
1 AAAAT-AAAT
50141718 AAAA
1 AAAA
50141722 ATAGAATAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
9 5 0.17
10 24 0.83
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.23
Consensus pattern (9 bp):
AAAATAAAT
Found at i:50142974 original size:724 final size:728
Alignment explanation
Indices: 50141540--50142988 Score: 2579
Period size: 724 Copynumber: 2.0 Consensus size: 728
50141530 GTGTATCTAG
* *
50141540 GGTTGAGTGGTCACCAAGTAGCTCATTGTCTATATAAGCAACCTTAGGGTCACCGGGATTCTATG
1 GGTTGAATGGTCACCAAGTAGCTCATTGTCTATATAAGCAACCTTAGGGTCACCGGGATTCTATA
* * *
50141605 CAGACTTAGAGACATAATTTTTCCTATTCAATTTTTTTTATATTTTCTTTGTTGGACAAAACACG
66 CAGACTTAGAGACATAATTTTTCCTATTCAA--TGTTTTATATTTTCTTTGTTGGAAAAAACACA
* *
50141670 TTAGTGAACAAAATAAATAAATATAAATAAACATATATAAAATAAAATAAAAATAGAATAATTTA
129 TTAGCGAACAAAATAAATAAATAAAAATAAACATATATAAAATAAAATAAAAATAGAATAATTTA
*
50141735 TATTTAATTTTTCAAATACGAAAAACAATCAAAACCGTAACAAAAGTTGAAATCAAAAGGGAGAA
194 TATTTAATTTTTCAAATACGAAAAACAATCAAAACCATAACAAAAGTTGAAATCAAAAGGGAGAA
50141800 TAGAGATTTTACTAAATGTTTAGGCCTGTTAAAAACAATTTCCTTAAGACATATTCATTCACTCC
259 TAGAGATTTTACTAAATGTTTAGGCCTGTTAAAAACAATTTCCTTAAGACATATTCATTCACTCC
*
50141865 TATGGTACTTGGAGAAACGTTGGTCGAATGTCTCCCAGGATACAACAAGAACAATGACCAAAGCA
324 TATGGTACTTGGAGAAACGTTGGTCGAATGTCTCCCAAGATACAACAAGAACAATGACCAAAGCA
* ** *
50141930 GTAGCACCTCTGCAGCGATTTACGAACAAACGATGTCTTTTTCTATCATCGGAACATTTGAAAAA
389 GTAGCACCTCTACAGCGATCAACGAACAAACGACGTCTTTTTCTATCATCGGAACATTTGAAAAA
*
50141995 TATAGAGAGGAAAAGAAAATTTTTGAGAGAAACAAAATTTCGGTGTGAAAGAATATTAGAGTGTC
454 TATAGAGAGGAAAAGAAAAGTTTTGAGAGAAACAAAATTTCGGTGTGAAAGAATATTAGAGTGTC
50142060 TAATACTACAGAATTTGTAGCCTTTTATAGGCATTGAGAATGTTGAAATTTTGGAAATTTTCCAC
519 TAATACTACAGAATTTGTAGCCTTTTATAGGCATTGAGAATGTTGAAATTTTGGAAATTTTCCAC
50142125 AAAATCTGCCATTAATGAACAAATAAATCAAATTTGATTTAAAGATTAAATCAAATTGATTGGAA
584 AAAATCTGCCATTAATGAACAAATAAATCAAATTTGATTTAAAGATTAAATCAAATTGATTGGAA
*
50142190 TCAAATAAATAAGATAAATGTCCTTATATAAACAGATTATGTAGGAAAAATAATTTTGTGTTGAG
649 TCAAATAAATAAGATAAATGTCATTATATAAACAGATTATGTAGGAAAAATAATTTTGTGTTGAG
50142255 CTAAAATATCCGCAA
714 CTAAAATATCCGCAA
50142270 GGTTGAATGGTCACCAAGTAGCTCATTGTCTATATAAGCAACCTTAGGGTCACCGGGATTCTATA
1 GGTTGAATGGTCACCAAGTAGCTCATTGTCTATATAAGCAACCTTAGGGTCACCGGGATTCTATA
*
50142335 CAGACTTAGAGACATAATTTTTCCTATTC-A-GTTTT-T-TTTTCTTTGTTGGAAAAAATACATT
66 CAGACTTAGAGACATAATTTTTCCTATTCAATGTTTTATATTTTCTTTGTTGGAAAAAACACATT
50142396 AGCGAACAAAATAAATAAATAAAAATAAACATATATAAAAT-AAATAAAAATAGAATAATTTATA
131 AGCGAACAAAATAAATAAATAAAAATAAACATATATAAAATAAAATAAAAATAGAATAATTTATA
50142460 TTTAATTTTTCAAATACGAAAAACAATCAAAACCATAACAAAAGTTGAAATCAAAAGGGAGAATA
196 TTTAATTTTTCAAATACGAAAAACAATCAAAACCATAACAAAAGTTGAAATCAAAAGGGAGAATA
50142525 GAGATTTTACTAAATGTTTAGGCCTGTTAAAAACAATTTCCTTAAGACATATTCATTCACTCCTA
261 GAGATTTTACTAAATGTTTAGGCCTGTTAAAAACAATTTCCTTAAGACATATTCATTCACTCCTA
*
50142590 TGGTACTTGGAGAAACGTTGGTCGAATGTCTCCCAAGATACAACAAGAACAATGACCAAAGTAGT
326 TGGTACTTGGAGAAACGTTGGTCGAATGTCTCCCAAGATACAACAAGAACAATGACCAAAGCAGT
50142655 AGCACCTCTACAGCGATCAACGAACAAACGACGTCTTTTTCTATCA-CTGGAACATTT-AACAAA
391 AGCACCTCTACAGCGATCAACGAACAAACGACGTCTTTTTCTATCATC-GGAACATTTGAA-AAA
* *
50142718 TATAGAGAGGAAAAAGAAAAGTTTTGAGAGAAACAGAATTTTGGTGTGAAAGAATATTAGAGTGT
454 TATAGAGAGG-AAAAGAAAAGTTTTGAGAGAAACAAAATTTCGGTGTGAAAGAATATTAGAGTGT
* *
50142783 CTAATACTGCAGAATTTGTAGTCTTTTATAGGCATTGAGAATGTTGAAATTTTGGAAATTTTCCA
518 CTAATACTACAGAATTTGTAGCCTTTTATAGGCATTGAGAATGTTGAAATTTTGGAAATTTTCCA
* * * *
50142848 CAAAATCTGTCATTAATGAGCAAATAAATCAAATTTGATTTAAAGATTAAATCAATTTTATTGGA
583 CAAAATCTGCCATTAATGAACAAATAAATCAAATTTGATTTAAAGATTAAATCAAATTGATTGGA
50142913 ATCAAATAAATAAGATAAATGTCATTATATAAACAGATTATGTAGGAAAAATAATTTTGTGTTGA
648 ATCAAATAAATAAGATAAATGTCATTATATAAACAGATTATGTAGGAAAAATAATTTTGTGTTGA
50142978 GCTAAAATATC
713 GCTAAAATATC
50142989 TGCAGGTCCA
Statistics
Matches: 691, Mismatches: 25, Indels: 12
0.95 0.03 0.02
Matches are distributed among these distances:
722 3 0.00
723 279 0.40
724 311 0.45
725 1 0.00
726 4 0.01
729 1 0.00
730 92 0.13
ACGTcount: A:0.41, C:0.13, G:0.15, T:0.31
Consensus pattern (728 bp):
GGTTGAATGGTCACCAAGTAGCTCATTGTCTATATAAGCAACCTTAGGGTCACCGGGATTCTATA
CAGACTTAGAGACATAATTTTTCCTATTCAATGTTTTATATTTTCTTTGTTGGAAAAAACACATT
AGCGAACAAAATAAATAAATAAAAATAAACATATATAAAATAAAATAAAAATAGAATAATTTATA
TTTAATTTTTCAAATACGAAAAACAATCAAAACCATAACAAAAGTTGAAATCAAAAGGGAGAATA
GAGATTTTACTAAATGTTTAGGCCTGTTAAAAACAATTTCCTTAAGACATATTCATTCACTCCTA
TGGTACTTGGAGAAACGTTGGTCGAATGTCTCCCAAGATACAACAAGAACAATGACCAAAGCAGT
AGCACCTCTACAGCGATCAACGAACAAACGACGTCTTTTTCTATCATCGGAACATTTGAAAAATA
TAGAGAGGAAAAGAAAAGTTTTGAGAGAAACAAAATTTCGGTGTGAAAGAATATTAGAGTGTCTA
ATACTACAGAATTTGTAGCCTTTTATAGGCATTGAGAATGTTGAAATTTTGGAAATTTTCCACAA
AATCTGCCATTAATGAACAAATAAATCAAATTTGATTTAAAGATTAAATCAAATTGATTGGAATC
AAATAAATAAGATAAATGTCATTATATAAACAGATTATGTAGGAAAAATAATTTTGTGTTGAGCT
AAAATATCCGCAA
Found at i:50143075 original size:16 final size:16
Alignment explanation
Indices: 50143054--50143093 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
50143044 CAGGTGTGCC
*
50143054 ATATATATACACGTAT
1 ATATATATACACATAT
* *
50143070 ATATATACACACATCT
1 ATATATATACACATAT
50143086 ATATATAT
1 ATATATAT
50143094 GTGGGATCCC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.45, C:0.15, G:0.03, T:0.38
Consensus pattern (16 bp):
ATATATATACACATAT
Found at i:50151801 original size:28 final size:29
Alignment explanation
Indices: 50151732--50151804 Score: 112
Period size: 30 Copynumber: 2.5 Consensus size: 29
50151722 TAGTAGTAGT
*
50151732 GTGTGGGCCATAGCCCAATACAGTAACAGA
1 GTGTGGGCCTTAGCCCAATACAGTAACA-A
50151762 GTGTGGGCCTTAGCCCAATACAGTAAC-A
1 GTGTGGGCCTTAGCCCAATACAGTAACAA
*
50151790 GTGTGGGTCTTAGCC
1 GTGTGGGCCTTAGCC
50151805 TAAAATAATA
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
28 15 0.37
30 26 0.63
ACGTcount: A:0.26, C:0.23, G:0.29, T:0.22
Consensus pattern (29 bp):
GTGTGGGCCTTAGCCCAATACAGTAACAA
Found at i:50151950 original size:26 final size:25
Alignment explanation
Indices: 50151921--50151976 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 25
50151911 GCCAACACAT
*
50151921 CGTAGCAAAGTTGCCAGTAATAATAA
1 CGTAGCAAAGTTGCCAG-AACAATAA
*
50151947 CGTAGCAAAGTTGCCAGAACAGTAA
1 CGTAGCAAAGTTGCCAGAACAATAA
50151972 CGTAG
1 CGTAG
50151977 TAGAGCTACC
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
25 11 0.39
26 17 0.61
ACGTcount: A:0.39, C:0.18, G:0.23, T:0.20
Consensus pattern (25 bp):
CGTAGCAAAGTTGCCAGAACAATAA
Found at i:50152214 original size:27 final size:27
Alignment explanation
Indices: 50152184--50152263 Score: 81
Period size: 27 Copynumber: 3.0 Consensus size: 27
50152174 TCAATTCCTA
50152184 GGGGTATAACAGTCATTTTACCCTAT-G
1 GGGGTATAACAGTCATTTTACCCT-TCG
** *
50152211 GGGGTATTTCGGTCATTTTACCCTTCG
1 GGGGTATAACAGTCATTTTACCCTTCG
** * *
50152238 GGGGTATTTCGGTCATTTTAACCTTC
1 GGGGTATAACAGTCATTTTACCCTTC
50152264 AAGGGTATTT
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 1 0.02
27 47 0.98
ACGTcount: A:0.17, C:0.20, G:0.24, T:0.39
Consensus pattern (27 bp):
GGGGTATAACAGTCATTTTACCCTTCG
Found at i:50152269 original size:27 final size:27
Alignment explanation
Indices: 50152195--50152411 Score: 234
Period size: 27 Copynumber: 8.2 Consensus size: 27
50152185 GGGTATAACA
*
50152195 GTCATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATAGGGGTATTTCG
*
50152222 GTCATTTTACCCT-TCGGGGGTATTTCG
1 GTCATTTTACCCTAT-AGGGGTATTTCG
* * *
50152249 GTCATTTTAACCT-TCAAGGGTATTTTG
1 GTCATTTTACCCTAT-AGGGGTATTTCG
* * *
50152276 ATCATTTTACCCT-TCAAGGGTATTTCT
1 GTCATTTTACCCTAT-AGGGGTATTTCG
*
50152303 ATCATTTTACCCTAT-GAGGGTATTTCG
1 GTCATTTTACCCTATAG-GGGTATTTCG
*
50152330 G----TTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATAGGGGTATTTCG
* *
50152353 GTTATTTTACCCTATAGGGGTATTTTG
1 GTCATTTTACCCTATAGGGGTATTTCG
50152380 GTCATTTTACCCTATAGGGGTATTTCG
1 GTCATTTTACCCTATAGGGGTATTTCG
50152407 GTCAT
1 GTCAT
50152412 ATATCGACTT
Statistics
Matches: 167, Mismatches: 15, Indels: 16
0.84 0.08 0.08
Matches are distributed among these distances:
23 21 0.13
24 1 0.01
26 1 0.01
27 143 0.86
28 1 0.01
ACGTcount: A:0.18, C:0.18, G:0.22, T:0.42
Consensus pattern (27 bp):
GTCATTTTACCCTATAGGGGTATTTCG
Found at i:50152338 original size:23 final size:23
Alignment explanation
Indices: 50152308--50152355 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
50152298 TTTCTATCAT
50152308 TTTACCCTATGAGGGTATTTCGG
1 TTTACCCTATGAGGGTATTTCGG
*
50152331 TTTACCCTATGGGGGTATTTCGG
1 TTTACCCTATGAGGGTATTTCGG
50152354 TT
1 TT
50152356 ATTTTACCCT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.15, C:0.17, G:0.27, T:0.42
Consensus pattern (23 bp):
TTTACCCTATGAGGGTATTTCGG
Found at i:50158824 original size:47 final size:47
Alignment explanation
Indices: 50158684--50159149 Score: 734
Period size: 47 Copynumber: 9.7 Consensus size: 47
50158674 ATTTGGATAA
50158684 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
50158733 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
50158782 ATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
50158829 ATGTGATGAATGTAAAAGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
50158876 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
50158925 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
50158974 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
50159021 ATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
50159068 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
50159115 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
50159150 TCCCGAAGGG
Statistics
Matches: 393, Mismatches: 22, Indels: 6
0.93 0.05 0.01
Matches are distributed among these distances:
47 230 0.59
49 163 0.41
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:50159013 original size:192 final size:192
Alignment explanation
Indices: 50158683--50159149 Score: 789
Period size: 192 Copynumber: 2.5 Consensus size: 192
50158673 TATTTGGATA
50158683 AATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 AATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
50158748 AAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
66 AAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
50158813 TGAGGCCTAATGGCCGATGTGATGAATGTAAAAGTGTATATATGTGATAAGGCCGAATGGCC
131 TAAGGCCTAATAGCCGATGTGATGAATGTAAAAGTGTATATATGTGATAAGGCCGAATGGCC
50158875 AATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 AATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
50158940 AAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
66 AAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
50159005 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCC
131 TAAGGCCTAATAGCCGATGTGATGAATGTAAAAGTGTATATATGTGATAAGGCCGAATGGCC
* * * * * * * *
50159067 GATGTGATGAATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGA
1 AATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
50159130 AAGTGTATA-A-ATGTGATAAG
66 AAGTGTATATATATGTGATAAG
50159150 TCCCGAAGGG
Statistics
Matches: 262, Mismatches: 13, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
188 10 0.04
189 1 0.00
190 44 0.17
192 207 0.79
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (192 bp):
AATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
AAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
TAAGGCCTAATAGCCGATGTGATGAATGTAAAAGTGTATATATGTGATAAGGCCGAATGGCC
Found at i:50161428 original size:40 final size:40
Alignment explanation
Indices: 50161369--50161689 Score: 439
Period size: 40 Copynumber: 8.1 Consensus size: 40
50161359 AGGTCTCGAC
50161369 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
50161408 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
50161448 GATGTACCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
50161488 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
50161528 GATGTATCCGGACTAAGTCCCGAAGAGTATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * *
50161568 GATGTATCCGGGCTAAGTTCTGAAGAGCAGTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * * * *
50161608 AATATATCCGTGCTAA-ACCTCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCC-CGAAGAGCATTCATGCTAGT
* * * * *
50161648 GTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
50161688 GA
1 GA
50161690 CGTGTATTCG
Statistics
Matches: 249, Mismatches: 30, Indels: 5
0.88 0.11 0.02
Matches are distributed among these distances:
39 5 0.02
40 242 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
Found at i:50165130 original size:49 final size:47
Alignment explanation
Indices: 50165070--50165562 Score: 786
Period size: 47 Copynumber: 10.6 Consensus size: 47
50165060 GATAATTGTG
* *
50165070 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
50165117 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
50165166 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
50165213 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
50165260 ATGTGAAAGTGTATATATGTGATAAGGCCTAAT-G--GATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
50165304 ATGTGAAAGTGTATATATTGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATA-TGTGATAAGGCCTAATGGCCGATGTGATGA
50165352 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
50165401 ATGTGAAAGTGTATATA-GTGATAAGGCCTAAT-GCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
50165446 ATGTGAAAGTGTATATA--TGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
50165491 ATGTGAAAGTGTATATATGTGA-CAGGGCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
50165537 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
50165563 TCCCGAAGGG
Statistics
Matches: 422, Mismatches: 12, Indels: 24
0.92 0.03 0.05
Matches are distributed among these distances:
44 40 0.09
45 76 0.18
46 55 0.13
47 136 0.32
48 21 0.05
49 88 0.21
50 6 0.01
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:50168018 original size:59 final size:58
Alignment explanation
Indices: 50167853--50168020 Score: 175
Period size: 59 Copynumber: 2.9 Consensus size: 58
50167843 ATTTTATAAT
* *
50167853 ATTATATATTATGATTTTTATT-AATTCATATTTTAATAATAA--TATTAAGAATGTTATTAA
1 ATTATATATTAT--TTTTTATTAAATT-ATA-TTTAATAATAATTTATTAA-AATATGATTAA
* * *
50167913 ATTGTATATTA--TTTTATTAAATTGTATTTAATAATAATTATGTTAAAATATGATTAA
1 ATTATATATTATTTTTTATTAAATTATATTTAATAATAATT-TATTAAAATATGATTAA
* *
50167970 ATTATTTATTATTTTTTATTAAACTATATTTAATAATAATCTTATTAAAAT
1 ATTATATATTATTTTTTATTAAATTATATTTAATAATAAT-TTATTAAAAT
50168021 TTAAAAATAA
Statistics
Matches: 91, Mismatches: 10, Indels: 15
0.78 0.09 0.13
Matches are distributed among these distances:
55 11 0.12
56 9 0.10
57 22 0.24
58 5 0.05
59 33 0.36
60 11 0.12
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.52
Consensus pattern (58 bp):
ATTATATATTATTTTTTATTAAATTATATTTAATAATAATTTATTAAAATATGATTAA
Found at i:50168202 original size:16 final size:16
Alignment explanation
Indices: 50168181--50168231 Score: 66
Period size: 16 Copynumber: 3.2 Consensus size: 16
50168171 TGAATTATTG
* * *
50168181 ATTACAACTCTGTTCT
1 ATTACAGCTCTATTCC
50168197 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
*
50168213 ATTACAGCTCTATTTC
1 ATTACAGCTCTATTCC
50168229 ATT
1 ATT
50168232 CCCCCCAACC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.25, C:0.25, G:0.06, T:0.43
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:50169772 original size:15 final size:14
Alignment explanation
Indices: 50169735--50169768 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
50169725 AACTTTAAAT
*
50169735 TATTTTTA-CAAAA
1 TATTTTTATAAAAA
50169748 TATTTTTATAAAAA
1 TATTTTTATAAAAA
50169762 TATTTTT
1 TATTTTT
50169769 TATATAATCT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 8 0.42
14 11 0.58
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (14 bp):
TATTTTTATAAAAA
Found at i:50172768 original size:38 final size:37
Alignment explanation
Indices: 50172716--50172811 Score: 111
Period size: 37 Copynumber: 2.6 Consensus size: 37
50172706 ACCACTTCAA
* *
50172716 CCACCCTACTCACCACATATGAGCTATATCAAGTCCAT
1 CCACCCTACACACCACATATGA-CCATATCAAGTCCAT
* * * * * *
50172754 CCACCCTTCACACCACATAGGACCATGTTAGGTCTAT
1 CCACCCTACACACCACATATGACCATATCAAGTCCAT
50172791 CCACCCTACACACCACATATG
1 CCACCCTACACACCACATATG
50172812 GTGGAACTAA
Statistics
Matches: 48, Mismatches: 10, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
37 29 0.60
38 19 0.40
ACGTcount: A:0.30, C:0.39, G:0.09, T:0.22
Consensus pattern (37 bp):
CCACCCTACACACCACATATGACCATATCAAGTCCAT
Found at i:50174597 original size:14 final size:14
Alignment explanation
Indices: 50174580--50174619 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
50174570 CCTAGCCGCC
50174580 TATATTAATTTTTT
1 TATATTAATTTTTT
50174594 TATATT-ATTATTTT
1 TATATTAATT-TTTT
50174608 TATA-TAATTTTT
1 TATATTAATTTTT
50174620 AAAAAGATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
13 7 0.29
14 17 0.71
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (14 bp):
TATATTAATTTTTT
Found at i:50183157 original size:145 final size:143
Alignment explanation
Indices: 50182958--50183247 Score: 526
Period size: 145 Copynumber: 2.0 Consensus size: 143
50182948 GAAAGTTGAC
50182958 TGTATTTATAAATAAAATATTGACACTTGGGCACTTGGACTTGAGTTTGAGTTTAGTGGTGCAAT
1 TGTATTTATAAATAAAATATTGACACTTGGGCACTTGGACTTGAGTTTGAGTTTAGTGGTGCAAT
**
50183023 AATATTTTTAATTATTATTATTTTTTGAAATAATTACGATAATTATTTTTTATCAAAAGTTGCAT
66 AATATTTTTAATTATTATTATTTTTCAAAATAATTACGATAATTA-TTTTTATCAAAAGTTGCAT
50183088 CTAAATCAACATGAT
130 CTAAATCAACAT-AT
*
50183103 TGTATTTATAAATGAAATATTGACACTTGGGCACTTGGACTTGAGTTTGAGTTTAGTGGTGCAAT
1 TGTATTTATAAATAAAATATTGACACTTGGGCACTTGGACTTGAGTTTGAGTTTAGTGGTGCAAT
*
50183168 AATATTTTTAATTATTATTATTTTTCAAAATACTTACGATAATTATTTTTATCAAAAGTTGCATC
66 AATATTTTTAATTATTATTATTTTTCAAAATAATTACGATAATTATTTTTATCAAAAGTTGCATC
50183233 TAAATCAACATAT
131 TAAATCAACATAT
50183246 TG
1 TG
50183248 AAATAATACA
Statistics
Matches: 141, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
143 4 0.03
144 31 0.22
145 106 0.75
ACGTcount: A:0.34, C:0.09, G:0.14, T:0.43
Consensus pattern (143 bp):
TGTATTTATAAATAAAATATTGACACTTGGGCACTTGGACTTGAGTTTGAGTTTAGTGGTGCAAT
AATATTTTTAATTATTATTATTTTTCAAAATAATTACGATAATTATTTTTATCAAAAGTTGCATC
TAAATCAACATAT
Found at i:50186706 original size:37 final size:37
Alignment explanation
Indices: 50186656--50186731 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
50186646 CTAAACATCC
50186656 AAGACACAAATTTCATAAAGAATTTAATTCCAAGAAA
1 AAGACACAAATTTCATAAAGAATTTAATTCCAAGAAA
50186693 AAGACACAAATTTCATAAAGAATTTAATTCCAAGAAA
1 AAGACACAAATTTCATAAAGAATTTAATTCCAAGAAA
50186730 AA
1 AA
50186732 CACATATGGG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.55, C:0.13, G:0.08, T:0.24
Consensus pattern (37 bp):
AAGACACAAATTTCATAAAGAATTTAATTCCAAGAAA
Found at i:50204437 original size:26 final size:27
Alignment explanation
Indices: 50204408--50204469 Score: 74
Period size: 25 Copynumber: 2.4 Consensus size: 27
50204398 AAATAAAACT
* **
50204408 AAAAGAAAAAAATCTACTCTAAAAA-G
1 AAAAGAAAAAAACCTAAACTAAAAATG
*
50204434 AAAAG-AGAAAACCTAAACTAAAAATG
1 AAAAGAAAAAAACCTAAACTAAAAATG
50204460 AAAAGAAAAA
1 AAAAGAAAAA
50204470 GAAAATAAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
25 15 0.52
26 11 0.38
27 3 0.10
ACGTcount: A:0.69, C:0.10, G:0.10, T:0.11
Consensus pattern (27 bp):
AAAAGAAAAAAACCTAAACTAAAAATG
Found at i:50204904 original size:10 final size:10
Alignment explanation
Indices: 50204876--50204919 Score: 52
Period size: 11 Copynumber: 4.2 Consensus size: 10
50204866 AGACAAGTAT
50204876 TTTTATTAAG
1 TTTTATTAAG
*
50204886 TTTTAATTATG
1 TTTT-ATTAAG
50204897 TTTTATTAAG
1 TTTTATTAAG
*
50204907 TTCTATTTAAG
1 TTTTA-TTAAG
50204918 TT
1 TT
50204920 AATAAAATCT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
10 13 0.45
11 16 0.55
ACGTcount: A:0.27, C:0.02, G:0.09, T:0.61
Consensus pattern (10 bp):
TTTTATTAAG
Found at i:50229777 original size:5 final size:5
Alignment explanation
Indices: 50229769--50229797 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
50229759 TTGATTATCT
50229769 TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
50229798 TTCAAAATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (5 bp):
TTTTA
Found at i:50239602 original size:27 final size:26
Alignment explanation
Indices: 50239572--50239629 Score: 71
Period size: 27 Copynumber: 2.2 Consensus size: 26
50239562 TGACATTTTT
*
50239572 ATTTTTCTAAAAAATATAAATTTTGAA
1 ATTTTTATAAAAAATATAAATTTT-AA
* * *
50239599 ATTTTTATAAATATTTTAAATTTTAA
1 ATTTTTATAAAAAATATAAATTTTAA
50239625 ATTTT
1 ATTTT
50239630 AAATTTTATT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 7 0.26
27 20 0.74
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (26 bp):
ATTTTTATAAAAAATATAAATTTTAA
Found at i:50239607 original size:18 final size:19
Alignment explanation
Indices: 50239586--50239622 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
50239576 TTCTAAAAAA
50239586 TATAAAT-TTTGAAATTTT
1 TATAAATATTTGAAATTTT
*
50239604 TATAAATATTTTAAATTTT
1 TATAAATATTTGAAATTTT
50239623 AAATTTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.57
Consensus pattern (19 bp):
TATAAATATTTGAAATTTT
Found at i:50239623 original size:7 final size:7
Alignment explanation
Indices: 50239611--50239637 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
50239601 TTTTATAAAT
50239611 ATTTTAA
1 ATTTTAA
50239618 ATTTTAA
1 ATTTTAA
50239625 ATTTTAA
1 ATTTTAA
50239632 ATTTTA
1 ATTTTA
50239638 TTTTGAGGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (7 bp):
ATTTTAA
Found at i:50246787 original size:25 final size:27
Alignment explanation
Indices: 50246727--50246797 Score: 76
Period size: 25 Copynumber: 2.7 Consensus size: 27
50246717 AATACTCTTA
*
50246727 CGAGCACATA-AATAGGAAGCTCTCTCT
1 CGAGC-CATATAACAGGAAGCTCTCTCT
* *
50246754 CGAGTCATATAACAGGAAGCTCT-TGT
1 CGAGCCATATAACAGGAAGCTCTCTCT
*
50246780 -GAGCCATATAACGGGAAG
1 CGAGCCATATAACAGGAAG
50246798 TTTATCCGGG
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
25 16 0.42
26 6 0.16
27 16 0.42
ACGTcount: A:0.34, C:0.21, G:0.24, T:0.21
Consensus pattern (27 bp):
CGAGCCATATAACAGGAAGCTCTCTCT
Found at i:50246985 original size:26 final size:26
Alignment explanation
Indices: 50246942--50247010 Score: 97
Period size: 26 Copynumber: 2.7 Consensus size: 26
50246932 CCCATATCGG
*
50246942 GAAGCTCT-GAAGATCCATTAATCAA
1 GAAGCTCTCGAAGAGCCATTAATCAA
* *
50246967 GAAGCTCTCAAAGAGCCATTAATCGA
1 GAAGCTCTCGAAGAGCCATTAATCAA
50246993 GAAGCTC-CGAAGAGCCAT
1 GAAGCTCTCGAAGAGCCAT
50247011 ATATCAGGAC
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
25 18 0.46
26 21 0.54
ACGTcount: A:0.38, C:0.23, G:0.20, T:0.19
Consensus pattern (26 bp):
GAAGCTCTCGAAGAGCCATTAATCAA
Found at i:50249411 original size:30 final size:30
Alignment explanation
Indices: 50249371--50249478 Score: 121
Period size: 30 Copynumber: 3.7 Consensus size: 30
50249361 TCTGGGCCTG
* *
50249371 AGCCCTATACAGTAGCAGTGTATAGGCCAT
1 AGCCCAATACAGTAACAGTGTATAGGCCAT
* * * *
50249401 AGCTCAATACAGTAACAGAGTGTAGGCCTT
1 AGCCCAATACAGTAACAGTGTATAGGCCAT
* *
50249431 AGCCCAATACAGTAACAGTGT-T-GGTCTT
1 AGCCCAATACAGTAACAGTGTATAGGCCAT
*
50249459 AGCCCAATACAATAACAGTG
1 AGCCCAATACAGTAACAGTG
50249479 CAAATGCAGT
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
28 24 0.35
29 1 0.01
30 43 0.63
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.23
Consensus pattern (30 bp):
AGCCCAATACAGTAACAGTGTATAGGCCAT
Found at i:50249441 original size:60 final size:58
Alignment explanation
Indices: 50249365--50249476 Score: 143
Period size: 60 Copynumber: 1.9 Consensus size: 58
50249355 AATCAGTCTG
* * * *
50249365 GGCCTGAGCCCTATACAGTAGCAGTGTATAGGCCATAGCTCAATACAGTAACAGAGTGTA
1 GGCCTGAGCCCAATACAGTAACAGTGT-T-GGCCATAGCCCAATACAATAACAGAGTGTA
* * *
50249425 GGCCTTAGCCCAATACAGTAACAGTGTTGGTCTTAGCCCAATACAATAACAG
1 GGCCTGAGCCCAATACAGTAACAGTGTTGGCCATAGCCCAATACAATAACAG
50249477 TGCAAATGCA
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
58 20 0.44
59 1 0.02
60 24 0.53
ACGTcount: A:0.32, C:0.23, G:0.22, T:0.22
Consensus pattern (58 bp):
GGCCTGAGCCCAATACAGTAACAGTGTTGGCCATAGCCCAATACAATAACAGAGTGTA
Found at i:50249613 original size:26 final size:26
Alignment explanation
Indices: 50249585--50249712 Score: 114
Period size: 26 Copynumber: 4.9 Consensus size: 26
50249575 CACCAATATC
* *
50249585 GCAGCAAAGCTACCAGTAATAGTAAC
1 GCAGCAAAGCTGCCAGTAATAGTAAT
* *
50249611 GCAGTAAAGCTGCCAGTAACAGTAAT
1 GCAGCAAAGCTGCCAGTAATAGTAAT
* * *
50249637 ACAGCAGAGCTGCCAGTAACAGTAAT
1 GCAGCAAAGCTGCCAGTAATAGTAAT
* *
50249663 ACAGCAGAGCTGCCAGT-ATCAGTAAT
1 GCAGCAAAGCTGCCAGTAAT-AGTAAT
* ** * *
50249689 GTAAAAAAGCTACCAATAATAGTA
1 GCAGCAAAGCTGCCAGTAATAGTA
50249713 TTTGTGGCAA
Statistics
Matches: 85, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
25 1 0.01
26 82 0.96
27 2 0.02
ACGTcount: A:0.41, C:0.20, G:0.20, T:0.18
Consensus pattern (26 bp):
GCAGCAAAGCTGCCAGTAATAGTAAT
Found at i:50249674 original size:52 final size:52
Alignment explanation
Indices: 50249586--50249688 Score: 134
Period size: 52 Copynumber: 2.0 Consensus size: 52
50249576 ACCAATATCG
* * *
50249586 CAGCAAAGCTACCAGTAATAGTAACGCAGTAAAGCTGCCAGTAACAGTAATA
1 CAGCAAAGCTACCAGTAACAGTAACACAGCAAAGCTGCCAGTAACAGTAATA
* * * * *
50249638 CAGCAGAGCTGCCAGTAACAGTAATACAGCAGAGCTGCCAGTATCAGTAAT
1 CAGCAAAGCTACCAGTAACAGTAACACAGCAAAGCTGCCAGTAACAGTAAT
50249689 GTAAAAAAGC
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
52 43 1.00
ACGTcount: A:0.39, C:0.22, G:0.21, T:0.17
Consensus pattern (52 bp):
CAGCAAAGCTACCAGTAACAGTAACACAGCAAAGCTGCCAGTAACAGTAATA
Found at i:50249991 original size:27 final size:27
Alignment explanation
Indices: 50249887--50250084 Score: 175
Period size: 27 Copynumber: 7.3 Consensus size: 27
50249877 GGGTATAATA
* *
50249887 GTCATTTTACCCTAT-AGGGGTATTTCG
1 GTCATTTTACCC-ATCAAGGGTATTTTG
** * * *
50249914 GTCCGTTTACCCTTCGAGGGTATTTCG
1 GTCATTTTACCCATCAAGGGTATTTTG
* * *
50249941 GTCATTTTACCCTTTAGGGGTATTTTG
1 GTCATTTTACCCATCAAGGGTATTTTG
** * *
50249968 GTCATTTTACCTTTCAAGGATATTTTA
1 GTCATTTTACCCATCAAGGGTATTTTG
* * *
50249995 GTCATTTTAACCATCGATGGTATTTTG
1 GTCATTTTACCCATCAAGGGTATTTTG
* * * *
50250022 ATAATTTTACCCATCGAGGGTATTTTA
1 GTCATTTTACCCATCAAGGGTATTTTG
50250049 GTCATTTTACCCATCGAA-GGTATTTTG
1 GTCATTTTACCCATC-AAGGGTATTTTG
50250076 GTCATTTTA
1 GTCATTTTA
50250085 AAGGCCTATT
Statistics
Matches: 137, Mismatches: 32, Indels: 4
0.79 0.18 0.02
Matches are distributed among these distances:
26 1 0.01
27 135 0.99
28 1 0.01
ACGTcount: A:0.21, C:0.17, G:0.19, T:0.43
Consensus pattern (27 bp):
GTCATTTTACCCATCAAGGGTATTTTG
Found at i:50250017 original size:81 final size:81
Alignment explanation
Indices: 50249927--50250085 Score: 196
Period size: 81 Copynumber: 2.0 Consensus size: 81
50249917 CGTTTACCCT
* * * * **
50249927 TCGAGGGTATTTCGGTCATTTTACCCTTTAG-GGGTATTTTGGTCATTTTACCTTTC-AAGGATA
1 TCGAGGGTATTTCGATAATTTTACCC-ATAGAGGGTATTTTAGTCATTTTACCCATCGAAGG-TA
50249990 TTTTAGTCATTTTAACCA
64 TTTTAGTCATTTTAACCA
* * *
50250008 TCGATGGTATTTTGATAATTTTACCCATCGAGGGTATTTTAGTCATTTTACCCATCGAAGGTATT
1 TCGAGGGTATTTCGATAATTTTACCCATAGAGGGTATTTTAGTCATTTTACCCATCGAAGGTATT
*
50250073 TTGGTCATTTTAA
66 TTAGTCATTTTAA
50250086 AGGCCTATTT
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
80 2 0.03
81 60 0.91
82 4 0.06
ACGTcount: A:0.23, C:0.15, G:0.18, T:0.44
Consensus pattern (81 bp):
TCGAGGGTATTTCGATAATTTTACCCATAGAGGGTATTTTAGTCATTTTACCCATCGAAGGTATT
TTAGTCATTTTAACCA
Found at i:50252623 original size:12 final size:12
Alignment explanation
Indices: 50252573--50252624 Score: 59
Period size: 12 Copynumber: 4.3 Consensus size: 12
50252563 GAAAAGAATC
**
50252573 GAAAAAGATTGT
1 GAAAAAGAAAGT
**
50252585 GAAAAAGAAAAC
1 GAAAAAGAAAGT
*
50252597 GAAAAAGAAATT
1 GAAAAAGAAAGT
50252609 GAAAAAGAAAGT
1 GAAAAAGAAAGT
50252621 GAAA
1 GAAA
50252625 GTGAGAAAAA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
12 33 1.00
ACGTcount: A:0.65, C:0.02, G:0.21, T:0.12
Consensus pattern (12 bp):
GAAAAAGAAAGT
Found at i:50252645 original size:21 final size:20
Alignment explanation
Indices: 50252609--50252651 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
50252599 AAAAGAAATT
*
50252609 GAAAAAGAAAGTGAAAGTGA
1 GAAAAAGAAAGCGAAAGTGA
*
50252629 GAAAAAGAAAGACGAAATTGA
1 GAAAAAGAAAG-CGAAAGTGA
50252650 GA
1 GA
50252652 TTAAACAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.60, C:0.02, G:0.28, T:0.09
Consensus pattern (20 bp):
GAAAAAGAAAGCGAAAGTGA
Found at i:50253846 original size:14 final size:14
Alignment explanation
Indices: 50253822--50253858 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
50253812 AGAAAAATGT
*
50253822 GAGAGGTGAGAGAA
1 GAGATGTGAGAGAA
*
50253836 GAGTTGTGAGAGAA
1 GAGATGTGAGAGAA
50253850 GAGATGTGA
1 GAGATGTGA
50253859 ATGAGGGATG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.38, C:0.00, G:0.46, T:0.16
Consensus pattern (14 bp):
GAGATGTGAGAGAA
Found at i:50258321 original size:5 final size:5
Alignment explanation
Indices: 50258292--50258330 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
50258282 TAAATTTAAA
* *
50258292 TCAAT TTAAT ACAAT TCATAT TCAAT TCAAT TCAAT TCA
1 TCAAT TCAAT TCAAT TCA-AT TCAAT TCAAT TCAAT TCA
50258331 CATCTTAGGA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
5 24 0.83
6 5 0.17
ACGTcount: A:0.41, C:0.18, G:0.00, T:0.41
Consensus pattern (5 bp):
TCAAT
Found at i:50258626 original size:19 final size:19
Alignment explanation
Indices: 50258602--50258640 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
50258592 TCTACCATAA
50258602 AACTTCATAATTCATGCAT
1 AACTTCATAATTCATGCAT
50258621 AACTTCATAATTCATGCAT
1 AACTTCATAATTCATGCAT
50258640 A
1 A
50258641 CTCATCCATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.36
Consensus pattern (19 bp):
AACTTCATAATTCATGCAT
Found at i:50259126 original size:13 final size:14
Alignment explanation
Indices: 50259097--50259129 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
50259087 GTAATCAGTA
*
50259097 AAATTTTCTTAACG
1 AAATTTTCATAACG
50259111 AAATTTTCAT-ACG
1 AAATTTTCATAACG
50259124 AAATTT
1 AAATTT
50259130 CTATCATAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 9 0.50
14 9 0.50
ACGTcount: A:0.39, C:0.12, G:0.06, T:0.42
Consensus pattern (14 bp):
AAATTTTCATAACG
Found at i:50260638 original size:15 final size:15
Alignment explanation
Indices: 50260618--50260649 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
50260608 TAGCAATAGG
50260618 AAAAAATATTATGCA
1 AAAAAATATTATGCA
50260633 AAAAAATATTATGCA
1 AAAAAATATTATGCA
50260648 AA
1 AA
50260650 GAAGAAGATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.62, C:0.06, G:0.06, T:0.25
Consensus pattern (15 bp):
AAAAAATATTATGCA
Found at i:50262892 original size:31 final size:31
Alignment explanation
Indices: 50262854--50262915 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
50262844 TGATCGTATC
* * *
50262854 GCAAAGATGGTTACAGAAATGAGTACTTATT
1 GCAAAGATGGCTACAGAAAGGAGTACATATT
50262885 GCAAAGATGGCTACAGAAAGGAGTACATATT
1 GCAAAGATGGCTACAGAAAGGAGTACATATT
50262916 TGCAGATGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.40, C:0.11, G:0.24, T:0.24
Consensus pattern (31 bp):
GCAAAGATGGCTACAGAAAGGAGTACATATT
Found at i:50263064 original size:7 final size:7
Alignment explanation
Indices: 50263031--50263060 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
50263021 ACCAAAAAAA
50263031 AATATTT
1 AATATTT
50263038 AATATTT
1 AATATTT
50263045 AATATTT
1 AATATTT
50263052 AAT-TTT
1 AATATTT
50263058 AAT
1 AAT
50263061 TTTTTAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 6 0.26
7 17 0.74
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (7 bp):
AATATTT
Found at i:50264482 original size:19 final size:19
Alignment explanation
Indices: 50264460--50264497 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
50264450 GGGGAAGAAG
*
50264460 AAAAGGAAAATAAAA-AAAT
1 AAAAAGAAAA-AAAATAAAT
50264479 AAAAAGAAAAAAAATAAAT
1 AAAAAGAAAAAAAATAAAT
50264498 TATTTAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.82, C:0.00, G:0.08, T:0.11
Consensus pattern (19 bp):
AAAAAGAAAAAAAATAAAT
Found at i:50269280 original size:27 final size:27
Alignment explanation
Indices: 50269239--50269292 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
50269229 GTCAAGGTGA
*
50269239 TTAACCATTTGCTCACTAAACTATGAT
1 TTAACCATTTGCTCACTAAACCATGAT
* * *
50269266 TTAACCTTTTTCTCATTAAACCATGAT
1 TTAACCATTTGCTCACTAAACCATGAT
50269293 CATTTTGTTG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.06, T:0.41
Consensus pattern (27 bp):
TTAACCATTTGCTCACTAAACCATGAT
Found at i:50281647 original size:11 final size:11
Alignment explanation
Indices: 50281633--50281661 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
50281623 AAAATTAAAA
50281633 AAAATTATTTT
1 AAAATTATTTT
50281644 AAAATTATTTT
1 AAAATTATTTT
50281655 AAAATTA
1 AAAATTA
50281662 AAAAAAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (11 bp):
AAAATTATTTT
Found at i:50281683 original size:41 final size:42
Alignment explanation
Indices: 50281622--50281750 Score: 181
Period size: 42 Copynumber: 3.1 Consensus size: 42
50281612 AATTTATTTT
*
50281622 AAAAATTAAAAAAAAT-TATTTTAAAATTATTTTAAAATTAAAA
1 AAAAATT--AAAAAATGTATTTTAAAAATATTTTAAAATTAAAA
50281665 AAAAATT-AAAAATGTATTTTAAAAATATTTTAAAATTAAAA
1 AAAAATTAAAAAATGTATTTTAAAAATATTTTAAAATTAAAA
** * *
50281706 AAATTTTAAAAAAAGTATTTTAAAAGTATTTTAAAATTAAAA
1 AAAAATTAAAAAATGTATTTTAAAAATATTTTAAAATTAAAA
50281748 AAA
1 AAA
50281751 TAAAAATATT
Statistics
Matches: 79, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
40 6 0.08
41 31 0.39
42 35 0.44
43 7 0.09
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.36
Consensus pattern (42 bp):
AAAAATTAAAAAATGTATTTTAAAAATATTTTAAAATTAAAA
Found at i:50281705 original size:17 final size:17
Alignment explanation
Indices: 50281683--50281716 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
50281673 AAAATGTATT
*
50281683 TTAAAAATATTTTAAAA
1 TTAAAAAAATTTTAAAA
50281700 TTAAAAAAATTTTAAAA
1 TTAAAAAAATTTTAAAA
50281717 AAAGTATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
TTAAAAAAATTTTAAAA
Found at i:50281751 original size:42 final size:42
Alignment explanation
Indices: 50281622--50281751 Score: 183
Period size: 41 Copynumber: 3.1 Consensus size: 42
50281612 AATTTATTTT
* * *
50281622 AAAAA-TTAAAAAAAATTATTTTAAAATTATTTTAAAATTAA
1 AAAAATTTTAAAAAAAGTATTTTAAAAATATTTTAAAATTAA
** *
50281663 AAAAAAATT-AAAAATGTATTTTAAAAATATTTTAAAATTAA
1 AAAAATTTTAAAAAAAGTATTTTAAAAATATTTTAAAATTAA
*
50281704 AAAAATTTTAAAAAAAGTATTTTAAAAGTATTTTAAAATTAA
1 AAAAATTTTAAAAAAAGTATTTTAAAAATATTTTAAAATTAA
50281746 AAAAAT
1 AAAAAT
50281752 AAAAATATTT
Statistics
Matches: 78, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
41 41 0.53
42 37 0.47
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (42 bp):
AAAAATTTTAAAAAAAGTATTTTAAAAATATTTTAAAATTAA
Found at i:50284549 original size:21 final size:22
Alignment explanation
Indices: 50284516--50284567 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
50284506 AAACTACGTT
* * *
50284516 AAAAGAGATGGAGAAG-GGAGG
1 AAAATAGAAGGAGAAGCAGAGG
50284537 AAAATAGAAGGAGAAGCAGAGG
1 AAAATAGAAGGAGAAGCAGAGG
*
50284559 AGAATAGAA
1 AAAATAGAA
50284568 AATAAAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
21 14 0.54
22 12 0.46
ACGTcount: A:0.54, C:0.02, G:0.38, T:0.06
Consensus pattern (22 bp):
AAAATAGAAGGAGAAGCAGAGG
Found at i:50292481 original size:44 final size:43
Alignment explanation
Indices: 50292426--50292533 Score: 117
Period size: 44 Copynumber: 2.4 Consensus size: 43
50292416 CTACTCTGCT
* * * *
50292426 ACTGCAGCTTCAAAAGTATAGGATTTGTCATTTTAATCTGCTTC
1 ACTGCAACTTCAAAAG-ATAGGATTGGTCACTTCAATCTGCTTC
** **
50292470 ACTGCAACTTCATGGAGATAGGATTGGTGGCTTCAATCTGCTTC
1 ACTGCAACTTCA-AAAGATAGGATTGGTCACTTCAATCTGCTTC
50292514 ACTGCAACTTCAAGAAGATA
1 ACTGCAACTTCAA-AAGATA
50292534 AGATCCGCCA
Statistics
Matches: 52, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
44 50 0.96
45 2 0.04
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.32
Consensus pattern (43 bp):
ACTGCAACTTCAAAAGATAGGATTGGTCACTTCAATCTGCTTC
Found at i:50292654 original size:51 final size:51
Alignment explanation
Indices: 50292552--50292655 Score: 118
Period size: 51 Copynumber: 2.0 Consensus size: 51
50292542 CATAATTTGT
* * *
50292552 AGCTTTAATCTATTCAACTGCAACACTAGGGAAAAAAGATTCGCTGCCTTC
1 AGCTTTAATCTATTCAACTACAACACTAGAGAAAAAAGATCCGCTGCCTTC
* * * * * * *
50292603 AGCTTTAATCTGTTCCACTACATCGCTAGAGAAATAAGATCCGTTGTCTTC
1 AGCTTTAATCTATTCAACTACAACACTAGAGAAAAAAGATCCGCTGCCTTC
50292654 AG
1 AG
50292656 TCTGCTTCAC
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
51 43 1.00
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (51 bp):
AGCTTTAATCTATTCAACTACAACACTAGAGAAAAAAGATCCGCTGCCTTC
Found at i:50292800 original size:194 final size:194
Alignment explanation
Indices: 50292462--50292815 Score: 532
Period size: 194 Copynumber: 1.8 Consensus size: 194
50292452 GTCATTTTAA
* *
50292462 TCTGCTTCACTGCAACTTCATGGAGATAGGATTGGTGGCTTCAATCTGCTTCACTGCAACTTCAA
1 TCTGCTTCACTGCAACTTCATGGAGATAGGACTGGTGGCTTCAATCTGCTCCACTGCAACTTCAA
*
50292527 GAAGATAAGATCCGCCATAATTTGTAGCTTTAATCTATTCAACTGCAACACTAGGGAAAAAAGAT
66 GAAGATAAGATCCGCCATAATTTGTAGCTTTAATCTATTCAACTGCAACACCAGGGAAAAAAGAT
* *
50292592 TCGCTGCCTTCAGCTTTAATCTGTTCCACTACATCGCTAGAGAAATAAGATCCGTTGTCTTCAG
131 TCACTGCATTCAGCTTTAATCTGTTCCACTACATCGCTAGAGAAATAAGATCCGTTGTCTTCAG
*
50292656 TCTGCTTCACTGCAATTTCA-GAGAGATAAGG-CTGGTGGCTTCAATCTGCTCCACTGCAACTTC
1 TCTGCTTCACTGCAACTTCATG-GAGAT-AGGACTGGTGGCTTCAATCTGCTCCACTGCAACTTC
* * * * * * ** *
50292719 AGGAAGATAAGTTCCGCTATGATTTGTAGCTTTAATCTGTTCCACTGCAATGCCAGGGAAATAAG
64 AAGAAGATAAGATCCGCCATAATTTGTAGCTTTAATCTATTCAACTGCAACACCAGGGAAAAAAG
*
50292784 ATTCATTGCATTCAGCTTTAATCTGTTCCACT
129 ATTCACTGCATTCAGCTTTAATCTGTTCCACT
50292816 GCAATGCCAG
Statistics
Matches: 142, Mismatches: 16, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
193 1 0.01
194 138 0.97
195 3 0.02
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (194 bp):
TCTGCTTCACTGCAACTTCATGGAGATAGGACTGGTGGCTTCAATCTGCTCCACTGCAACTTCAA
GAAGATAAGATCCGCCATAATTTGTAGCTTTAATCTATTCAACTGCAACACCAGGGAAAAAAGAT
TCACTGCATTCAGCTTTAATCTGTTCCACTACATCGCTAGAGAAATAAGATCCGTTGTCTTCAG
Found at i:50292811 original size:51 final size:51
Alignment explanation
Indices: 50292746--50293347 Score: 841
Period size: 51 Copynumber: 11.9 Consensus size: 51
50292736 TATGATTTGT
* ** *
50292746 AGCTTTAATCTGTTCCACTGCAATGCCAGGGAAATAAGATTCATTGCATTC
1 AGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* * *
50292797 AGCTTTAATCTGTTCCACTGCAATGCCAGGGAATTAAGATTCGCTACCTTC
1 AGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* *
50292848 AGCTTTAATCTGTTCCACTGCAATGCCAGGGAAATAAGATTAGCTGCCTTC
1 AGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* * *
50292899 AGCTTTAGTCTGTTCTACTGTAACGCCAGGGAAATAAGATTCGCTGCCTTC
1 AGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* *
50292950 AGCTTTAATCTGTTCCACTACAACGCCAGAGAAATAAGATTCGCTGCCTTC
1 AGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
*
50293001 AGCTTTAATCTGTTCCACTGCAACGCCACGGAAATAAGATTCGCTGCCTTC
1 AGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* * * **
50293052 AGCTTTAATCTGTTCCACTGCAACGCTA-AGAAAAAAGATTTTCTGCCTTC
1 AGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* **
50293102 AACTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTTACTGCCTTC
1 AGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* *
50293153 AGCTTTAATCTGTTCCACTGTAACGCCATGGAAATAAGATTCGCTGCCTTC
1 AGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* * * * * * *
50293204 AACTTTAATTTGTTCCATTGCAACGCCAGAGAAATAAAATTCGTTGCCTTA
1 AGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* *
50293255 AGCTTTAGTCTGTTCAACTGCAACGCCA-GGAAA-AAGATTCGCTGCCTTC
1 AGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* * * *
50293304 AGCTTTAATCTGTTCCACTGCAACACTAGAGAAAAAAGATTCGC
1 AGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGC
50293348 CATAATGACT
Statistics
Matches: 489, Mismatches: 59, Indels: 6
0.88 0.11 0.01
Matches are distributed among these distances:
49 37 0.08
50 52 0.11
51 400 0.82
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (51 bp):
AGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
Found at i:50297234 original size:19 final size:20
Alignment explanation
Indices: 50297210--50297256 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
50297200 TGGTGGACTT
* *
50297210 TAATGCATATG-ATGTAATG
1 TAATGCAAATGCATGAAATG
50297229 TAATGCAAATGCATGAAATG
1 TAATGCAAATGCATGAAATG
50297249 -AATGCAAA
1 TAATGCAAA
50297257 AAGAGACGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.45, C:0.09, G:0.19, T:0.28
Consensus pattern (20 bp):
TAATGCAAATGCATGAAATG
Found at i:50299131 original size:17 final size:18
Alignment explanation
Indices: 50299105--50299138 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
50299095 ATGAACTACA
50299105 AATAACCAATA-AATACC
1 AATAACCAATACAATACC
*
50299122 AATAAGCAATACAATAC
1 AATAACCAATACAATAC
50299139 ACACAAGAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.59, C:0.21, G:0.03, T:0.18
Consensus pattern (18 bp):
AATAACCAATACAATACC
Found at i:50300209 original size:10 final size:10
Alignment explanation
Indices: 50300194--50300220 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
50300184 ATTCTTTACA
50300194 AAAAAAAAAG
1 AAAAAAAAAG
50300204 AAAAAAAAAG
1 AAAAAAAAAG
50300214 AAAAAAA
1 AAAAAAA
50300221 CTTAAATGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.93, C:0.00, G:0.07, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:50301257 original size:29 final size:29
Alignment explanation
Indices: 50301221--50301285 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 29
50301211 TGTCGCCAGA
* * *
50301221 CCGTGTGCCTTACACGCCTGTGTCTCAGG
1 CCGTGTGCCTCACACGCCCGTGTCTCAAG
*
50301250 CTGTGTGCCTCACACGCCCGTGTCTCAAG
1 CCGTGTGCCTCACACGCCCGTGTCTCAAG
50301279 CCGTGTG
1 CCGTGTG
50301286 AACCCAAAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.11, C:0.35, G:0.28, T:0.26
Consensus pattern (29 bp):
CCGTGTGCCTCACACGCCCGTGTCTCAAG
Found at i:50306762 original size:21 final size:22
Alignment explanation
Indices: 50306732--50306772 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
50306722 ATATCTAAAT
*
50306732 TACCACACACTCATA-TATATA
1 TACCACACACACATACTATATA
*
50306753 TACCATACACACATACTATA
1 TACCACACACACATACTATA
50306773 AAACTTTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.44, C:0.29, G:0.00, T:0.27
Consensus pattern (22 bp):
TACCACACACACATACTATATA
Found at i:50309298 original size:21 final size:20
Alignment explanation
Indices: 50309267--50309309 Score: 52
Period size: 22 Copynumber: 2.1 Consensus size: 20
50309257 CTATAATATT
50309267 TTTAAACAAACTAG-GAAAA
1 TTTAAACAAACTAGAGAAAA
*
50309286 TTTAGAACAAAACTTGAGAAAA
1 TTTA-AAC-AAACTAGAGAAAA
50309308 TT
1 TT
50309310 GAGAGTTTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 4 0.20
20 3 0.15
21 6 0.30
22 7 0.35
ACGTcount: A:0.53, C:0.09, G:0.12, T:0.26
Consensus pattern (20 bp):
TTTAAACAAACTAGAGAAAA
Found at i:50310383 original size:40 final size:41
Alignment explanation
Indices: 50310248--50310486 Score: 187
Period size: 41 Copynumber: 5.9 Consensus size: 41
50310238 GATTTTTTGA
* ** *
50310248 GCCTTTAGCGGCGTTTTTGTAAAAGCGACGCTAATGCTC-G
1 GCCTTTAGAGGCGTTTTTGTCTAAGCGCCGCTAATGCTCTG
* * * * ** *
50310288 GATCTTTAGCGGCGTTTCTATCTGGGCGCCGCTAATTCTCTG
1 G-CCTTTAGAGGCGTTTTTGTCTAAGCGCCGCTAATGCTCTG
* ** *
50310330 GCCTTTAGCGGCGTTTTTAACTAAGCGCCGCTAATGGT-TG
1 GCCTTTAGAGGCGTTTTTGTCTAAGCGCCGCTAATGCTCTG
* * ** *
50310370 GCCTTTAGTGGCGTTTTTGTTTGTGCGCCGCTAATGCTGTG
1 GCCTTTAGAGGCGTTTTTGTCTAAGCGCCGCTAATGCTCTG
* * *
50310411 GCCTTTAGAGGCGCTTTTGTGTAAGCGCCGCTAATGCAT-TT
1 GCCTTTAGAGGCGTTTTTGTCTAAGCGCCGCTAATGC-TCTG
* * * * *
50310452 ACCTTTAGCGGCGTTTTGGCCGAAGCGCCGCTAAT
1 GCCTTTAGAGGCGTTTTTGTCTAAGCGCCGCTAAT
50310487 AGTAAAAAAA
Statistics
Matches: 159, Mismatches: 36, Indels: 7
0.79 0.18 0.03
Matches are distributed among these distances:
40 34 0.21
41 122 0.77
42 3 0.02
ACGTcount: A:0.15, C:0.23, G:0.28, T:0.33
Consensus pattern (41 bp):
GCCTTTAGAGGCGTTTTTGTCTAAGCGCCGCTAATGCTCTG
Found at i:50310415 original size:81 final size:81
Alignment explanation
Indices: 50310248--50310467 Score: 223
Period size: 81 Copynumber: 2.7 Consensus size: 81
50310238 GATTTTTTGA
* *
50310248 GCCTTTAGCGGCGTTTTTGTAA-AAGCGACGCTAATGCTCGGATCTTTAGCGGCGTTTCTATCTG
1 GCCTTTAGCGGCG-TTTT-TAATAAGCGCCGCTAATGCTCGGACCTTTAGCGGCGTTTCTATCTG
*
50310312 GGCGCCGCTAATTCTCTG
64 GGCGCCGCTAATGCTCTG
* * * * * * *
50310330 GCCTTTAGCGGCGTTTTTAACTAAGCGCCGCTAATGGTTGG-CCTTTAGTGGCGTTTTTGTTTGT
1 GCCTTTAGCGGCGTTTTTAA-TAAGCGCCGCTAATGCTCGGACCTTTAGCGGCGTTTCTATCTGG
*
50310394 GCGCCGCTAATGCTGTG
65 GCGCCGCTAATGCTCTG
* * **
50310411 GCCTTTAGAGGCGCTTTTGT-GTAAGCGCCGCTAATGCAT-TTACCTTTAGCGGCGTTT
1 GCCTTTAGCGGCG-TTTT-TAATAAGCGCCGCTAATGC-TCGGACCTTTAGCGGCGTTT
50310468 TGGCCGAAGC
Statistics
Matches: 115, Mismatches: 17, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
80 3 0.03
81 63 0.55
82 48 0.42
83 1 0.01
ACGTcount: A:0.15, C:0.23, G:0.28, T:0.35
Consensus pattern (81 bp):
GCCTTTAGCGGCGTTTTTAATAAGCGCCGCTAATGCTCGGACCTTTAGCGGCGTTTCTATCTGGG
CGCCGCTAATGCTCTG
Done.