Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67659327
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 461372 characters in sequence are not A, C, G, or T
File 163 of 216
Found at i:51240681 original size:15 final size:15
Alignment explanation
Indices: 51240657--51240706 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
51240647 GAAGAAGAAA
*
51240657 TGTCTAGTAGTGATG
1 TGTCTGGTAGTGATG
51240672 TGTCTGGTAGTGATG
1 TGTCTGGTAGTGATG
** **
51240687 CATCTGAAAGTGATG
1 TGTCTGGTAGTGATG
51240702 TGTCT
1 TGTCT
51240707 AATAGGATAA
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.20, C:0.10, G:0.32, T:0.38
Consensus pattern (15 bp):
TGTCTGGTAGTGATG
Found at i:51242470 original size:25 final size:26
Alignment explanation
Indices: 51242419--51242478 Score: 77
Period size: 25 Copynumber: 2.3 Consensus size: 26
51242409 TGTATGACTG
**
51242419 TTTTTAATATACATGTTGTTGACTAT
1 TTTTTAATATACATGCAGTTGACTAT
* *
51242445 TTTTTAATATGCATGCAG-TGAGTAT
1 TTTTTAATATACATGCAGTTGACTAT
51242470 TTTTTAATA
1 TTTTTAATA
51242479 ATATGCATGT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
25 15 0.50
26 15 0.50
ACGTcount: A:0.28, C:0.07, G:0.13, T:0.52
Consensus pattern (26 bp):
TTTTTAATATACATGCAGTTGACTAT
Found at i:51242492 original size:28 final size:28
Alignment explanation
Indices: 51242449--51242502 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
51242439 GACTATTTTT
51242449 TAATATGCATGCAGTGAGTATTTTTTAA
1 TAATATGCATGCAGTGAGTATTTTTTAA
* * *
51242477 TAATATGCATGTAGTGATTGTTTTTT
1 TAATATGCATGCAGTGAGTATTTTTT
51242503 TAGGTGTGTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.28, C:0.06, G:0.19, T:0.48
Consensus pattern (28 bp):
TAATATGCATGCAGTGAGTATTTTTTAA
Found at i:51243200 original size:21 final size:21
Alignment explanation
Indices: 51243176--51243227 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
51243166 CAAGTGGTTG
51243176 CCCCAACTCAGCAACA-AGCTA
1 CCCCAACTCAGCAACAGAG-TA
* *
51243197 CCCCAAATCAGCAAGAGAGTA
1 CCCCAACTCAGCAACAGAGTA
51243218 CCCCAACTCA
1 CCCCAACTCA
51243228 ATAGGCTGCC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
21 25 0.93
22 2 0.07
ACGTcount: A:0.38, C:0.40, G:0.12, T:0.10
Consensus pattern (21 bp):
CCCCAACTCAGCAACAGAGTA
Found at i:51255121 original size:10 final size:10
Alignment explanation
Indices: 51255092--51255122 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
51255082 TGCCAAAAGA
*
51255092 AGAACAACAA
1 AGAACAACAG
51255102 AGAACAACAG
1 AGAACAACAG
51255112 AGAACAACAG
1 AGAACAACAG
51255122 A
1 A
51255123 AAGAACGCTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.65, C:0.19, G:0.16, T:0.00
Consensus pattern (10 bp):
AGAACAACAG
Found at i:51256785 original size:19 final size:20
Alignment explanation
Indices: 51256747--51256785 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
51256737 TATGGTTAAA
*
51256747 TATATTTCTTTTCATATAATG
1 TATATTTCTATT-ATATAATG
51256768 TATATTTCTATT-TATAAT
1 TATATTTCTATTATATAAT
51256786 TTCTTTCAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
21 11 0.65
ACGTcount: A:0.31, C:0.08, G:0.03, T:0.59
Consensus pattern (20 bp):
TATATTTCTATTATATAATG
Found at i:51260581 original size:9 final size:9
Alignment explanation
Indices: 51260567--51260613 Score: 58
Period size: 9 Copynumber: 5.0 Consensus size: 9
51260557 TTTTAAAATA
51260567 TATATTTTT
1 TATATTTTT
51260576 TATATTTTT
1 TATATTTTT
*
51260585 TAATAAATTTT
1 T-AT-ATTTTT
51260596 TATATTTTT
1 TATATTTTT
*
51260605 TGTATTTTT
1 TATATTTTT
51260614 ATAAAATCTT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
9 23 0.70
10 4 0.12
11 6 0.18
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (9 bp):
TATATTTTT
Found at i:51262223 original size:14 final size:14
Alignment explanation
Indices: 51262204--51262246 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
51262194 TCACAAATTA
51262204 GTAATTTAGTTCTT
1 GTAATTTAGTTCTT
**
51262218 GTAATTTTTTTCTT
1 GTAATTTAGTTCTT
*
51262232 GGAATTTAGTCTCTT
1 GTAATTTAGT-TCTT
51262247 TACTTTTCAA
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
14 19 0.83
15 4 0.17
ACGTcount: A:0.19, C:0.09, G:0.14, T:0.58
Consensus pattern (14 bp):
GTAATTTAGTTCTT
Found at i:51263776 original size:21 final size:21
Alignment explanation
Indices: 51263752--51263798 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
51263742 TCGAAAATGA
*
51263752 TTTTTAAAAAATGAATTTATT
1 TTTTTAAAAAATGAATATATT
* * *
51263773 TTTTAAAAAAATTAATATCTT
1 TTTTTAAAAAATGAATATATT
51263794 TTTTT
1 TTTTT
51263799 GTGTTTGTAT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.55
Consensus pattern (21 bp):
TTTTTAAAAAATGAATATATT
Found at i:51264052 original size:11 final size:11
Alignment explanation
Indices: 51264036--51264071 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
51264026 AACTAATTTT
51264036 TTAATTTTTAA
1 TTAATTTTTAA
51264047 TTAATTTTTAA
1 TTAATTTTTAA
*
51264058 -TGATTTTTAA
1 TTAATTTTTAA
51264068 TTAA
1 TTAA
51264072 ACTAGTTAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
10 9 0.41
11 13 0.59
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (11 bp):
TTAATTTTTAA
Found at i:51265985 original size:109 final size:109
Alignment explanation
Indices: 51265709--51266035 Score: 442
Period size: 109 Copynumber: 3.0 Consensus size: 109
51265699 TGAATTAAGA
* * * * *
51265709 TTTAAGAGAATATTTGGCTATTTGGTCAAATGA-AAAAATCGAAACCCAGCGCATTAGGGCACGT
1 TTTAAG-G-ATATTTGGCTATTTGGTCGAACGAGAAAAATCGAAACCCAGCACATTAGGACACTT
* *
51265773 TTCTCAAATTTCCAAACGCAAAATATTGTCTTATTTTGAAATTTTT
64 TTCTCGAATTTCCAAACGCAAAATATTGCCTTATTTTGAAATTTTT
* * * *
51265819 TTTAAAAGGGATATTTGACTATTTGGTTGAACGAGAAAAATCAAAACCCAGAACATTAGGACACA
1 TTT--AA-GGATATTTGGCTATTTGGTCGAACGAGAAAAATCGAAACCCAGCACATTAGGACAC-
*
51265884 TTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATTTTGAAA-TTTT
62 TTTTCTCGAATTTCCAAACGCAAAATATTGCCTTATTTTGAAATTTTT
*
51265931 TTTAAGGATATTTGGCTATTTGGTCGAACGAGAAATATCGAAACCCAGCACATTAGGACACGTTT
1 TTTAAGGATATTTGGCTATTTGGTCGAACGAGAAAAATCGAAACCCAGCACATTAGGACAC-TTT
* *
51265996 TCTCGAATTTCCAAACGCAAAATATTACCTTATTTAGAAA
65 TCTCGAATTTCCAAACGCAAAATATTGCCTTATTTTGAAA
51266036 AATTTTCCTC
Statistics
Matches: 191, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
109 91 0.48
110 5 0.03
111 20 0.10
112 35 0.18
113 40 0.21
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32
Consensus pattern (109 bp):
TTTAAGGATATTTGGCTATTTGGTCGAACGAGAAAAATCGAAACCCAGCACATTAGGACACTTTT
CTCGAATTTCCAAACGCAAAATATTGCCTTATTTTGAAATTTTT
Found at i:51266266 original size:30 final size:27
Alignment explanation
Indices: 51266232--51266286 Score: 65
Period size: 29 Copynumber: 1.9 Consensus size: 27
51266222 GGACAACAAC
51266232 TAAAACAATAATAACAATAAAGAAAATAGA
1 TAAAA-AATAATAA-AATAAA-AAAATAGA
* *
51266262 TAAAAAATTATAAAATATAAAAATA
1 TAAAAAATAATAAAATAAAAAAATA
51266287 TGTATGTACA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 6 0.26
28 5 0.22
29 7 0.30
30 5 0.22
ACGTcount: A:0.71, C:0.04, G:0.04, T:0.22
Consensus pattern (27 bp):
TAAAAAATAATAAAATAAAAAAATAGA
Found at i:51268228 original size:46 final size:45
Alignment explanation
Indices: 51268176--51268317 Score: 118
Period size: 44 Copynumber: 3.2 Consensus size: 45
51268166 CTTCAACTTA
51268176 CTCCACTAATGCTTAGGGAGATAGGATTAATGGCTTAAATCTGCTT
1 CTCCACTAATGCTTAGGGAGATAGGATTAAT-GCTTAAATCTGCTT
* ***
51268222 CTCCACT-AT-CTT-GGGAAGATAAGATTCACCAT-CTCCGATCTG---
1 CTCCACTAATGCTTAGGG-AGATAGGATT-A--ATGCTTAAATCTGCTT
* **
51268264 CTCCACTACTGCTTAGGGAGATAGGACAAATGACTTAAATCTGCTT
1 CTCCACTAATGCTTAGGGAGATAGGATTAATG-CTTAAATCTGCTT
51268310 CTCCACTA
1 CTCCACTA
51268318 TCTTGGGAAG
Statistics
Matches: 73, Mismatches: 11, Indels: 24
0.68 0.10 0.22
Matches are distributed among these distances:
41 2 0.03
42 7 0.10
43 12 0.16
44 22 0.30
45 13 0.18
46 15 0.21
47 2 0.03
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (45 bp):
CTCCACTAATGCTTAGGGAGATAGGATTAATGCTTAAATCTGCTT
Found at i:51268271 original size:42 final size:42
Alignment explanation
Indices: 51268222--51268359 Score: 122
Period size: 44 Copynumber: 3.2 Consensus size: 42
51268212 AAATCTGCTT
*
51268222 CTCCACTATCTTGGGAAGATAAGATTCACCATCTCCGATCTG
1 CTCCACTATCTTGGGAAGATAAGATTCACCATCTTCGATCTG
* * **
51268264 CTCCACTACTGCTTAGGG-AGATAGGA--CA-AATGACTTAAATCTG
1 CTCCACTA-T-CTT-GGGAAGATAAGATTCACCAT--CTTCGATCTG
51268307 CTTCTCCACTATCTTGGGAAGATAAGATTCACCATCTTCGATCTG
1 ---CTCCACTATCTTGGGAAGATAAGATTCACCATCTTCGATCTG
*
51268352 CTCTACTA
1 CTCCACTA
51268360 CTGCTTAGGG
Statistics
Matches: 74, Mismatches: 10, Indels: 24
0.69 0.09 0.22
Matches are distributed among these distances:
41 2 0.03
42 17 0.23
43 11 0.15
44 20 0.27
45 12 0.16
46 10 0.14
47 2 0.03
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.30
Consensus pattern (42 bp):
CTCCACTATCTTGGGAAGATAAGATTCACCATCTTCGATCTG
Found at i:51268271 original size:88 final size:88
Alignment explanation
Indices: 51268176--51268372 Score: 340
Period size: 88 Copynumber: 2.2 Consensus size: 88
51268166 CTTCAACTTA
* ** *
51268176 CTCCACTAATGCTTAGGGAGATAGGATTAATGGCTTAAATCTGCTTCTCCACTATCTTGGGAAGA
1 CTCCACTACTGCTTAGGGAGATAGGACAAATGACTTAAATCTGCTTCTCCACTATCTTGGGAAGA
51268241 TAAGATTCACCATCTCCGATCTG
66 TAAGATTCACCATCTCCGATCTG
51268264 CTCCACTACTGCTTAGGGAGATAGGACAAATGACTTAAATCTGCTTCTCCACTATCTTGGGAAGA
1 CTCCACTACTGCTTAGGGAGATAGGACAAATGACTTAAATCTGCTTCTCCACTATCTTGGGAAGA
*
51268329 TAAGATTCACCATCTTCGATCTG
66 TAAGATTCACCATCTCCGATCTG
*
51268352 CTCTACTACTGCTTAGGGAGA
1 CTCCACTACTGCTTAGGGAGA
51268373 CAGAACCTGC
Statistics
Matches: 103, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
88 103 1.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.30
Consensus pattern (88 bp):
CTCCACTACTGCTTAGGGAGATAGGACAAATGACTTAAATCTGCTTCTCCACTATCTTGGGAAGA
TAAGATTCACCATCTCCGATCTG
Found at i:51268330 original size:132 final size:128
Alignment explanation
Indices: 51268092--51268511 Score: 333
Period size: 132 Copynumber: 3.2 Consensus size: 128
51268082 ATTTACTTCC
* * *
51268092 CTACTACCTTGGGAAGATAAGATTCATCATCTTTGATCTGCTCCACTACTGCTTA---AGA-A-G
1 CTACTATCTTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGG
** *
51268152 ACAGAAT-CTGCAATCTTCAACTTACTCCACTAATGCTTAGGG-AGATAGGATT-A-ATGGCTTA
66 ACA-AATGCTTAAATC-T--ACTT-CTCCACT-AT-CTT-GGGAAGATAAGATTCACAT--CTTA
51268213 AATCTGCTT
121 AATCTGC-T
*
51268222 CTCCACTATCTTGGGAAGATAAGATTCACCATCTCCGATCTGCTCCACTACTGCTTAGGGAGATA
1 CT--ACTATCTTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATA
* **
51268287 GGACAAATGACTTAAATCTGCTTCTCCACTATCTTGGGAAGATAAGATTCACCATCTTCGATCTG
64 GGACAAATG-CTTAAATCTACTTCTCCACTATCTTGGGAAGATAAGATTCA-CATCTTAAATCTG
51268352 CT
127 CT
* ** * * * * *
51268354 CTACTACTGCTTAGGG-AGA-CAGAACCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGA
1 CTACTA-T-CTT-GGGAAGATAAGATTC-ACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGA
* * **
51268417 TAGGACTAATGGCTTAAATATACTTCTCCACTATCTTGGGAAGATAAGATTCACCATCTTTGATC
62 TAGGACAAAT-GCTTAAATCTACTTCTCCACTATCTTGGGAAGATAAGATTCA-CATCTTAAATC
51268482 TGCT
125 TGCT
*
51268486 CCACTACTGCTTAGGG-AGATAAGATT
1 CTACTA-T-CTT-GGGAAGATAAGATT
51268512 TTCTATCTTT
Statistics
Matches: 244, Mismatches: 27, Indels: 35
0.80 0.09 0.11
Matches are distributed among these distances:
130 6 0.02
131 8 0.03
132 181 0.74
133 19 0.08
134 7 0.03
135 8 0.03
136 4 0.02
137 5 0.02
138 6 0.02
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.30
Consensus pattern (128 bp):
CTACTATCTTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGG
ACAAATGCTTAAATCTACTTCTCCACTATCTTGGGAAGATAAGATTCACATCTTAAATCTGCT
Found at i:51268385 original size:220 final size:220
Alignment explanation
Indices: 51268094--51268506 Score: 700
Period size: 220 Copynumber: 1.9 Consensus size: 220
51268084 TTACTTCCCT
* * *
51268094 ACTACCTTGGGAAGATAAGATTCATCATCTTTGATCTGCTCCACTACTGCTTAAGAAGACAGAAT
1 ACTACCTTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAAGAAGACAGAAC
* * * *
51268159 CTGCAATCTTCAACTTACTCCACTAATGCTTAGGGAGATAGGATTAATGGCTTAAATCTGCTTCT
66 CTGCAATCTTCAACCTACTCCACTAATGCTTAGGGAGATAGGACTAATGGCTTAAATATACTTCT
51268224 CCACTATCTTGGGAAGATAAGATTCACCATCTCCGATCTGCTCCACTACTGCTTAGGGAGATAGG
131 CCACTATCTTGGGAAGATAAGATTCACCATCTCCGATCTGCTCCACTACTGCTTAGGGAGATAGG
51268289 ACAAATGACTTAAATCTGCTTCTCC
196 ACAAATGACTTAAATCTGCTTCTCC
* * * *
51268314 ACTATCTTGGGAAGATAAGATTCACCATCTTCGATCTGCTCTACTACTGCTTAGGGAGACAGAAC
1 ACTACCTTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAAGAAGACAGAAC
*
51268379 CTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATATACTTCT
66 CTGCAATCTTCAACCTACTCCACTAATGCTTAGGGAGATAGGACTAATGGCTTAAATATACTTCT
**
51268444 CCACTATCTTGGGAAGATAAGATTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATA
131 CCACTATCTTGGGAAGATAAGATTCACCATCTCCGATCTGCTCCACTACTGCTTAGGGAGATA
51268507 AGATTTTCTA
Statistics
Matches: 179, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
220 179 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.30
Consensus pattern (220 bp):
ACTACCTTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAAGAAGACAGAAC
CTGCAATCTTCAACCTACTCCACTAATGCTTAGGGAGATAGGACTAATGGCTTAAATATACTTCT
CCACTATCTTGGGAAGATAAGATTCACCATCTCCGATCTGCTCCACTACTGCTTAGGGAGATAGG
ACAAATGACTTAAATCTGCTTCTCC
Found at i:51268520 original size:44 final size:42
Alignment explanation
Indices: 51268222--51268527 Score: 103
Period size: 44 Copynumber: 7.0 Consensus size: 42
51268212 AAATCTGCTT
***
51268222 CTCCACTATCTTGGGAAGATAAGATTCACCATCTCCGATCTG
1 CTCCACTATCTTGGGAAGATAAGATTCACCATCTTTAATCTG
* * *
51268264 CTCCACTACTGCTTAGGG-AGATAGGA--CA-AATGACTTAAATCTG
1 CTCCACTA-T-CTT-GGGAAGATAAGATTCACCAT--CTTTAATCTG
**
51268307 CTTCTCCACTATCTTGGGAAGATAAGATTCACCATCTTCGATCTG
1 ---CTCCACTATCTTGGGAAGATAAGATTCACCATCTTTAATCTG
* * ** * * * * *
51268352 CTCTACTACTGCTTAGGG-AGA-CAGAACCTGCAATCTTCAACCTA
1 CTCCACTA-T-CTT-GGGAAGATAAGATTC-ACCATCTTTAATCTG
* * * *
51268396 CTCCACTACTGCTTAGGG-AGATAGGACT-A--ATGGCTTAAATATACTT
1 CTCCACTA-T-CTT-GGGAAGATAAGATTCACCAT--CTT-TA-AT-CTG
*
51268442 CTCCACTATCTTGGGAAGATAAGATTCACCATCTTTGATCTG
1 CTCCACTATCTTGGGAAGATAAGATTCACCATCTTTAATCTG
** *
51268484 CTCCACTACTGCTTAGGG-AGATAAGATTTTCTATCTTTAATCTG
1 CTCCACTA-T-CTT-GGGAAGATAAGATTCACCATCTTTAATCTG
51268528 ATATGCTGTA
Statistics
Matches: 199, Mismatches: 36, Indels: 56
0.68 0.12 0.19
Matches are distributed among these distances:
41 4 0.02
42 27 0.14
43 25 0.13
44 93 0.47
45 26 0.13
46 20 0.10
47 4 0.02
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (42 bp):
CTCCACTATCTTGGGAAGATAAGATTCACCATCTTTAATCTG
Found at i:51268520 original size:132 final size:132
Alignment explanation
Indices: 51268264--51268509 Score: 420
Period size: 132 Copynumber: 1.9 Consensus size: 132
51268254 CTCCGATCTG
* *
51268264 CTCCACTACTGCTTAGGGAGATAGGACAAATGACTTAAATCTGCTTCTCCACTATCTTGGGAAGA
1 CTCCACTACTGCTTAGGGAGATAGGACAAATGACTTAAATATACTTCTCCACTATCTTGGGAAGA
* *
51268329 TAAGATTCACCATCTTCGATCTGCTCTACTACTGCTTAGGGAGACAGAACCTGCAATCTTCAACC
66 TAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGAAAGAACCTGCAATCTTCAACC
51268394 TA
131 TA
* *
51268396 CTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATATACTTCTCCACTATCTTGGGAAGA
1 CTCCACTACTGCTTAGGGAGATAGGACAAATGACTTAAATATACTTCTCCACTATCTTGGGAAGA
*
51268461 TAAGATTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGA
66 TAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGA-AAGA
51268510 TTTTCTATCT
Statistics
Matches: 106, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
132 103 0.97
133 3 0.03
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (132 bp):
CTCCACTACTGCTTAGGGAGATAGGACAAATGACTTAAATATACTTCTCCACTATCTTGGGAAGA
TAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGAAAGAACCTGCAATCTTCAACC
TA
Found at i:51268702 original size:89 final size:89
Alignment explanation
Indices: 51268543--51270492 Score: 2664
Period size: 89 Copynumber: 21.9 Consensus size: 89
51268533 CTGTAAACTA
* *
51268543 TGGTGTCTTCGATCTGCTTCGCTGTCAGTATAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
1 TGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
51268608 GCTGTCAGTACAGGAAGGCAAGGC
66 GCTGTCAGTACAGGAAGGCAAGGC
* * * *
51268632 TGGTGTCTTCGATCTACTTCGCCGTCAGTACAGGAAGGCAATATCTACTATCTTCAGTCTGCCCC
1 TGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
* * * *
51268697 ACTGTCAGTATAGGATGGAAAGGC
66 GCTGTCAGTACAGGAAGGCAAGGC
* * * *
51268721 TGGTGTCTTCGATCTGCTTCACCGTCAGTATAGAAAGGCAAGATCTGCTATCTTTAGTCTGCTCC
1 TGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
* *
51268786 ACTGTCAGTACAGTAAGGCAAGGC
66 GCTGTCAGTACAGGAAGGCAAGGC
* *
51268810 TGGTGTCCTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGCTATCTTTAGTCTGCTCC
1 TGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
* * **
51268875 ACTATCAGTACAGGAAGGCAAGTT
66 GCTGTCAGTACAGGAAGGCAAGGC
* * *
51268899 TGGTGTCTTCGATCTGTTTCGCCGTCAGTACAGGAAGGCAAGATCTGTTATCTTCAGTCTGCTTC
1 TGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
*
51268964 GCTGTCAGTACAGGAAGGCAAGGT
66 GCTGTCAGTACAGGAAGGCAAGGC
* * * * *
51268988 TGGTGTCTTCGATCTACTTCGCTGTCAGTACATGAAGGCAAGATTTGTTATCTTCAGTCTGCTCC
1 TGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
* *
51269053 GCTGTCAGTACAAGAAGGTAAGGC
66 GCTGTCAGTACAGGAAGGCAAGGC
* * * *
51269077 TGGTGTCTTCGATCTGCTTCGCCGTCAGTATAGGAAGGCAATATCTACTATCTTCAGTCTGCCCC
1 TGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
* *
51269142 ACTGTCAGTATAGGAAGGCAAGGC
66 GCTGTCAGTACAGGAAGGCAAGGC
* * *
51269166 TGGTGTCTTCGATCTGCTTCACCGTCAGTACAGAAAGGCAAGATCTGCTATCTTCAGTCTACTCC
1 TGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
* *
51269231 ACTGTCAGTACAGGAAGGTAAGGC
66 GCTGTCAGTACAGGAAGGCAAGGC
* *
51269255 TGGTGTCCTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGCTATCTTTAGTCTGCTCC
1 TGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
* *
51269320 GCTATCAGTACAGGAAGGCAAGGT
66 GCTGTCAGTACAGGAAGGCAAGGC
* * * * *
51269344 TGGTGTCTTCGATCTGCTTCGTCATCAGTACAGGAAGGTAAGATCTGTTATCTTCAGTCTGCTGC
1 TGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
* *
51269409 GCTGTCAGTATAGGAAGGCAATGC
66 GCTGTCAGTACAGGAAGGCAAGGC
* ** * * * * *
51269433 TTGTGTCTTCGATCTGCTTCATCGTTAGTACAGGAAGGCAAGATCTGTTATCTTCAATCTACTCT
1 TGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
*
51269498 GCTGTCAGTACAGGAAGGCAAGGT
66 GCTGTCAGTACAGGAAGGCAAGGC
* * * * *
51269522 TGGTGTCTTCGATCTGGTTTGCCGTCAGTACAGGAAGGTAAGATCTGTTATCTTCAGTGTGCTCC
1 TGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
* *
51269587 GTTGTCAGTACAGGAAGGCAAGGA
66 GCTGTCAGTACAGGAAGGCAAGGC
* * ** *
51269611 TAGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAATATCTGCTATCTGAAGTCTGCCCC
1 TGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
51269676 GCTGTCAGTACAGGAAGGCAAGGC
66 GCTGTCAGTACAGGAAGGCAAGGC
* * * * * *
51269700 TGCTGTCTTCGAACTACTTCACCGTCAGTACAGAAAGGCAAGATCTGCTATCTTTAGTCTGCTCC
1 TGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
*
51269765 ACTGTCAGTACAGGAAGGCAAGGC
66 GCTGTCAGTACAGGAAGGCAAGGC
* *
51269789 TGGTGTCCTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGCTATCTTTAGTCTGCTCC
1 TGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
* * *
51269854 GCTATCAGTACAGGAAGGCATGGT
66 GCTGTCAGTACAGGAAGGCAAGGC
* * * *
51269878 TGGTGTCTTCGATCTGCTTCGCCGTTAGTACAGGAAGGCAAGATTTGTTATCTTCAGTTTGCTCC
1 TGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
51269943 GCTGTCAGTACAGGAAGGCAAGGC
66 GCTGTCAGTACAGGAAGGCAAGGC
* ** *
51269967 TGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTATTATTTTCAGTCTGCTCC
1 TGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
* * * *
51270032 ACTGTCAGTGCAGGAAGGCAAAGT
66 GCTGTCAGTACAGGAAGGCAAGGC
* * * * * *
51270056 TGGTGTCTTCAATCTGCTTCACCGTCAGTATACGAAGGCAAGATCTGTTATCTTTAGTCTGCTCC
1 TGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
*
51270121 GCTGTCAATACAGGAAGGCAAGGC
66 GCTGTCAGTACAGGAAGGCAAGGC
* * * * *
51270145 TGGTGTCTTCGATTTGCTTCCCCGTCTA-TACAGGAAGGCAAGATCTGATATCTTTAGTCTGCTT
1 TGGTGTCTTCGATCTGCTTCGCCGTC-AGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTC
51270209 CGCTGTCAGTACAGGAAGGCAAGGC
65 CGCTGTCAGTACAGGAAGGCAAGGC
* * *
51270234 TGGTGTCTTCGATCTACTTCGCCGTCAGTACAGGAAGGCAAGATCTGTTATCTTCAGTCTGCTCT
1 TGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
* *
51270299 GCTTTCAGTACAGGAAGACAAGGC
66 GCTGTCAGTACAGGAAGGCAAGGC
* * * * *
51270323 TGGTGTTTTTGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGTTATCTTCACTCTGCTCC
1 TGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
* *
51270388 GCTGTCAATACAGGAAGGTAAGGC
66 GCTGTCAGTACAGGAAGGCAAGGC
* * * * * * *
51270412 TGGTGTCTTCGATCTGCTCCGCTGTCAGTACAAGAAGGCAAGGTCTG-TGTCTTC-GATCTACTT
1 TGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAG-TCTGCTC
* *
51270475 CGCCGTCAGTACAAGAAG
65 CGCTGTCAGTACAGGAAG
51270493 AGAAGATCTA
Statistics
Matches: 1640, Mismatches: 218, Indels: 7
0.88 0.12 0.00
Matches are distributed among these distances:
88 27 0.02
89 1612 0.98
90 1 0.00
ACGTcount: A:0.22, C:0.23, G:0.26, T:0.29
Consensus pattern (89 bp):
TGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
GCTGTCAGTACAGGAAGGCAAGGC
Found at i:51270510 original size:89 final size:90
Alignment explanation
Indices: 51268822--51270778 Score: 551
Period size: 89 Copynumber: 22.0 Consensus size: 90
51268812 GTGTCCTCGA
* * * * * * * * **
51268822 TCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGCTATCTT-TAGTCTGCTCCACTATCAGTAC
1 TCTGCTCCGCTGTCAGTACAGGAAGGCAAGGTCTGGTGTCTTCGA-TCTGCTTCGCCGTCAGTAC
* * * *
51268886 AGGAAGGCAAG-TTTGGTGTCTTC-G
65 AAGAAGGCAAGATCTGCTATCTTCAG
* * * * * * *
51268910 ATCTGTTTCGCCGTCAGTACAGGAAGGCAAGATCTGTTATCTTC-AGTCTGCTTCGCTGTCAGTA
1 -TCTGCTCCGCTGTCAGTACAGGAAGGCAAGGTCTGGTGTCTTCGA-TCTGCTTCGCCGTCAGTA
* * * *
51268974 CAGGAAGGCAAGGT-TGGTGTCTTC-G
64 CAAGAAGGCAAGATCTGCTATCTTCAG
* * * * * * * * *
51268999 ATCTACTTCGCTGTCAGTACATGAAGGCAAGATTTGTTATCTTC-AGTCTGCTCCGCTGTCAGTA
1 -TCTGCTCCGCTGTCAGTACAGGAAGGCAAGGTCTGGTGTCTTCGA-TCTGCTTCGCCGTCAGTA
* * * *
51269063 CAAGAAGGTAAG-GCTGGTGTCTTC-G
64 CAAGAAGGCAAGATCTGCTATCTTCAG
* * * ** ** * ** * *
51269088 ATCTGCTTCGCCGTCAGTATAGGAAGGCAATATCTACTATCTTC-AGTCTGCCCCACTGTCAGTA
1 -TCTGCTCCGCTGTCAGTACAGGAAGGCAAGGTCTGGTGTCTTCGA-TCTGCTTCGCCGTCAGTA
* * * * *
51269152 TAGGAAGGCAAG-GCTGGTGTCTTC-G
64 CAAGAAGGCAAGATCTGCTATCTTCAG
* * * * * * * * * * *
51269177 ATCTGCTTCACCGTCAGTACAGAAAGGCAAGATCTGCTATCTTC-AGTCTACTCCACTGTCAGTA
1 -TCTGCTCCGCTGTCAGTACAGGAAGGCAAGGTCTGGTGTCTTCGA-TCTGCTTCGCCGTCAGTA
* * * * * *
51269241 CAGGAAGGTAAG-GCTGGTGTCCTC-G
64 CAAGAAGGCAAGATCTGCTATCTTCAG
* * * * * * * **
51269266 ATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGCTATCTT-TAGTCTGCTCCGCTATCAGTA
1 -TCTGCTCCGCTGTCAGTACAGGAAGGCAAGGTCTGGTGTCTTCGA-TCTGCTTCGCCGTCAGTA
* * * *
51269330 CAGGAAGGCAAGGT-TGGTGTCTTC-G
64 CAAGAAGGCAAGATCTGCTATCTTCAG
* * * * * * * *
51269355 ATCTGCTTCG-TCATCAGTACAGGAAGGTAAGATCTGTTATCTTC-AGTCTGCTGCGCTGTCAGT
1 -TCTGCTCCGCT-GTCAGTACAGGAAGGCAAGGTCTGGTGTCTTCGA-TCTGCTTCGCCGTCAGT
* * * *
51269418 ATAGGAAGGCAATGCT-TG-TGTCTTC-G
63 ACAAGAAGGCAA-GATCTGCTATCTTCAG
* * * * * * * * *
51269444 ATCTGCTTC-ATCGTTAGTACAGGAAGGCAAGATCTGTTATCTTCAATCTAC-TCTGCTGTCAGT
1 -TCTGCTCCGCT-GTCAGTACAGGAAGGCAAGGTCTGGTGTCTTCGATCTGCTTC-GCCGTCAGT
* * * *
51269507 ACAGGAAGGCAAGGT-TGGTGTCTTC-G
63 ACAAGAAGGCAAGATCTGCTATCTTCAG
* ** * * * * * * * **
51269533 ATCTGGTTTGCCGTCAGTACAGGAAGGTAAGATCTGTTATCTTC-AGTGTGCTCCGTTGTCAGTA
1 -TCTGCTCCGCTGTCAGTACAGGAAGGCAAGGTCTGGTGTCTTCGA-TCTGCTTCGCCGTCAGTA
* * *
51269597 CAGGAAGGCAAGGAT-AG-TGTCTTC-G
64 CAAGAAGGCAA-GATCTGCTATCTTCAG
* * ** * * ** *
51269622 ATCTGCTTCGCCGTCAGTACAGGAAGGCAATATCTGCTATC-T-GAAGTCTGCCCCGCTGTCAGT
1 -TCTGCTCCGCTGTCAGTACAGGAAGGCAAGGTCTGGTGTCTTCG-A-TCTGCTTCGCCGTCAGT
* * *
51269685 ACAGGAAGGCAAG-GCTGCTGTCTTC-G
63 ACAAGAAGGCAAGATCTGCTATCTTCAG
* * * * * * * * * * * * *
51269711 AACTACTTCACCGTCAGTACAGAAAGGCAAGATCTGCTATCTT-TAGTCTGCTCCACTGTCAGTA
1 -TCTGCTCCGCTGTCAGTACAGGAAGGCAAGGTCTGGTGTCTTCGA-TCTGCTTCGCCGTCAGTA
* * * * *
51269775 CAGGAAGGCAAG-GCTGGTGTCCTC-G
64 CAAGAAGGCAAGATCTGCTATCTTCAG
* * * * * * * **
51269800 ATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGCTATCTT-TAGTCTGCTCCGCTATCAGTA
1 -TCTGCTCCGCTGTCAGTACAGGAAGGCAAGGTCTGGTGTCTTCGA-TCTGCTTCGCCGTCAGTA
* * * * *
51269864 CAGGAAGGCATGGT-TGGTGTCTTC-G
64 CAAGAAGGCAAGATCTGCTATCTTCAG
* * * * * * * * * *
51269889 ATCTGCTTCGCCGTTAGTACAGGAAGGCAAGATTTGTTATCTTC-AGTTTGCTCCGCTGTCAGTA
1 -TCTGCTCCGCTGTCAGTACAGGAAGGCAAGGTCTGGTGTCTTCGA-TCTGCTTCGCCGTCAGTA
* * * *
51269953 CAGGAAGGCAAG-GCTGGTGTCTTC-G
64 CAAGAAGGCAAGATCTGCTATCTTCAG
* * ** * * * * * *
51269978 ATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTATTATTTTC-AGTCTGCTCCACTGTCAGTG
1 -TCTGCTCCGCTGTCAGTACAGGAAGGCAAGGTCTGGTGTCTTCGA-TCTGCTTCGCCGTCAGTA
* * * *
51270042 CAGGAAGGCAA-AGT-TGGTGTCTTCAA
64 CAAGAAGGCAAGA-TCTGCTATCTTCAG
* * * * * * * * * * * *
51270068 TCTGCTTCACCGTCAGTATACGAAGGCAAGATCTGTTATCTT-TAGTCTGCTCCGCTGTCAATAC
1 TCTGCTCCGCTGTCAGTACAGGAAGGCAAGGTCTGGTGTCTTCGA-TCTGCTTCGCCGTCAGTAC
* * * *
51270132 AGGAAGGCAAG-GCTGGTGTCTTC-G
65 AAGAAGGCAAGATCTGCTATCTTCAG
* * * * * * *
51270156 ATTTGCTTCC-CCGTCTA-TACAGGAAGGCAAGATCTGATATCTT-TAGTCTGCTTCGCTGTCAG
1 -TCTGC-TCCGCTGTC-AGTACAGGAAGGCAAGGTCTGGTGTCTTCGA-TCTGCTTCGCCGTCAG
* * * *
51270218 TACAGGAAGGCAAG-GCTGGTGTCTTC-G
62 TACAAGAAGGCAAGATCTGCTATCTTCAG
* * * * * * **
51270245 ATCTACTTCGCCGTCAGTACAGGAAGGCAAGATCTGTTATCTTC-AGTCTGC-TCTGCTTTCAGT
1 -TCTGCTCCGCTGTCAGTACAGGAAGGCAAGGTCTGGTGTCTTCGA-TCTGCTTC-GCCGTCAGT
* * * * * **
51270308 ACAGGAAGACAAG-GCTGGTGT-TTTTG
63 ACAAGAAGGCAAGATCTGCTATCTTCAG
* * * * * * *
51270334 ATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGTTATCTTC-ACTCTGCTCCGCTGTCAATA
1 -TCTGCTCCGCTGTCAGTACAGGAAGGCAAGGTCTGGTGTCTTCGA-TCTGCTTCGCCGTCAGTA
* * * * *
51270398 CAGGAAGGTAAG-GCTGGTGTCTTC-G
64 CAAGAAGGCAAGATCTGCTATCTTCAG
* *
51270423 ATCTGCTCCGCTGTCAGTACAAGAAGGCAAGGTCT-GTGTCTTCGATCTACTTCGCCGTCAGTAC
1 -TCTGCTCCGCTGTCAGTACAGGAAGGCAAGGTCTGGTGTCTTCGATCTGCTTCGCCGTCAGTAC
** *
51270487 AAGAAGAG-AAGATCTATTTTCTTCAG
65 AAGAAG-GCAAGATCTGCTATCTTCAG
* *
51270513 TCTGCTCCGCTGGCAGTACAGGAAGGTAAGG-CTGGTGTCTTCGATCTGCTTCGCCGTCAGTAC-
1 TCTGCTCCGCTGTCAGTACAGGAAGGCAAGGTCTGGTGTCTTCGATCTGCTTCGCCGTCAGTACA
*
51270576 AGAA-ACATAAGATCTGCTATCTTCAG
66 AGAAGGC--AAGATCTGCTATCTTCAG
* * * * * * * *
51270602 TCTTCTCTGCTGTTAGTATAGGAAGGTAAGG-CTAGTGTCTTCGATCTTCTTCGCCGTTAGTACA
1 TCTGCTCCGCTGTCAGTACAGGAAGGCAAGGTCTGGTGTCTTCGATCTGCTTCGCCGTCAGTACA
51270666 AGAAGGCAAGATCTGCTATCTTCAG
66 AGAAGGCAAGATCTGCTATCTTCAG
* * * *
51270691 TCTGCTCCGTTGTCAGTAAAGGAAGGCAAGGT-TGGTGTCTTCGATTTGCTTCACCGTCAGTACA
1 TCTGCTCCGCTGTCAGTACAGGAAGGCAAGGTCTGGTGTCTTCGATCTGCTTCGCCGTCAGTACA
* *
51270755 GGAAGGCAAGATCTGTTATCTTCA
66 AGAAGGCAAGATCTGCTATCTTCA
51270779 CTAATCTGTT
Statistics
Matches: 1621, Mismatches: 196, Indels: 102
0.84 0.10 0.05
Matches are distributed among these distances:
88 51 0.03
89 1547 0.95
90 22 0.01
91 1 0.00
ACGTcount: A:0.22, C:0.23, G:0.26, T:0.29
Consensus pattern (90 bp):
TCTGCTCCGCTGTCAGTACAGGAAGGCAAGGTCTGGTGTCTTCGATCTGCTTCGCCGTCAGTACA
AGAAGGCAAGATCTGCTATCTTCAG
Found at i:51276027 original size:108 final size:109
Alignment explanation
Indices: 51275740--51276065 Score: 476
Period size: 108 Copynumber: 3.0 Consensus size: 109
51275730 TGGATTAAGA
*
51275740 TTTAAGAGAATATTTGGCTATTTGGTCAAACGA-AAAAATCGAAACCCAGCGCATTAGGGCACGT
1 TTTAAG-G-ATATTTGGCTATTTGGTCAAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGT
* * *
51275804 TTCCTCAAATTTCCAAACGCAAAATATTGTCTTATTTTGAAATTTT
64 TTTCTCAAATTTCCAAACGCAAAATATTGCCTTATTTTGAAAGTTT
* * *
51275850 TTTAAAAGGGATATTTGGCTATTTGATCGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACA
1 TTT--AA-GGATATTTGGCTATTTGGTCAAACGAGAAAAATCGAAACCCAGCACATTAGGGCACG
*
51275915 TTTTCTCAAATTTCCAAACGCAAAACATTGCCTTATTTTG-AAGTTT
63 TTTTCTCAAATTTCCAAACGCAAAATATTGCCTTATTTTGAAAGTTT
* *
51275961 TTTAAGGATATTTGGCTATTTGGTCAAACGAGAAATATCAAAACCCAGCACATTAGGGCACGTTT
1 TTTAAGGATATTTGGCTATTTGGTCAAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTT
* * *
51276026 TCTCGAATTTCCAAATGCAAAATATTGCCTTATTTAGAAA
66 TCTCAAATTTCCAAACGCAAAATATTGCCTTATTTTGAAA
51276066 AATTTTCCTT
Statistics
Matches: 194, Mismatches: 17, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
108 88 0.45
109 4 0.02
110 3 0.02
111 30 0.15
112 68 0.35
113 1 0.01
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.32
Consensus pattern (109 bp):
TTTAAGGATATTTGGCTATTTGGTCAAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTT
TCTCAAATTTCCAAACGCAAAATATTGCCTTATTTTGAAAGTTT
Found at i:51276243 original size:4 final size:4
Alignment explanation
Indices: 51276234--51276259 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
51276224 TTATGGACAT
51276234 ATAA ATAA ATAA ATAA ATAA ATAA AT
1 ATAA ATAA ATAA ATAA ATAA ATAA AT
51276260 GGACAACAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (4 bp):
ATAA
Found at i:51278017 original size:23 final size:21
Alignment explanation
Indices: 51277973--51278017 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
51277963 ACAGCAAAGT
* *
51277973 AAAACTTATATAATTCTAAAA
1 AAAACATATATAATTATAAAA
*
51277994 AAAACATATATATATTATAGAA
1 AAAACATATATA-ATTATAAAA
51278016 AA
1 AA
51278018 TGCATGTCTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.60, C:0.07, G:0.02, T:0.31
Consensus pattern (21 bp):
AAAACATATATAATTATAAAA
Found at i:51278903 original size:50 final size:50
Alignment explanation
Indices: 51278836--51279127 Score: 233
Period size: 50 Copynumber: 5.8 Consensus size: 50
51278826 TGCAATGTCG
* * * *
51278836 GGGAGACAAGATTCGCCATCGTAGCTTCAATCTGTTCCACTACACCGCCA
1 GGGAAACAAGATCCGCCGTCGTGGCTTCAATCTGTTCCACTACACCGCCA
** * * * ** * * ** *
51278886 GGGAAGTAAGATCCGCCATTGTGGCTTCAATCTTTTTAATTTCAATGTCA
1 GGGAAACAAGATCCGCCGTCGTGGCTTCAATCTGTTCCACTACACCGCCA
* * * *
51278936 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTATCCCACTACACCGCCA
1 GGGAAACAAGATCCGCCGTCGTGGCTTCAATCTGTTCCACTACACCGCCA
* * * * ** * * ** **
51278986 GGGAAACAAGATTCACCGTTGTGGCTTCAATCTTTTTTATTGCAATGTTA
1 GGGAAACAAGATCCGCCGTCGTGGCTTCAATCTGTTCCACTACACCGCCA
* *
51279036 GGGAAACCAGATCCGCCGTCGTGGCTTCAATCTGTTCCAATACACCGCCA
1 GGGAAACAAGATCCGCCGTCGTGGCTTCAATCTGTTCCACTACACCGCCA
* ** * *
51279086 GGGAAACAAGATTCATCGTTGTGGCTTCAATCTATTCCACTA
1 GGGAAACAAGATCCGCCGTCGTGGCTTCAATCTGTTCCACTA
51279128 TAATGCCAAA
Statistics
Matches: 178, Mismatches: 64, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
50 178 1.00
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (50 bp):
GGGAAACAAGATCCGCCGTCGTGGCTTCAATCTGTTCCACTACACCGCCA
Found at i:51278964 original size:100 final size:100
Alignment explanation
Indices: 51278821--51279118 Score: 425
Period size: 100 Copynumber: 3.0 Consensus size: 100
51278811 TTCAGTCTGC
* * * * * *
51278821 TTAACTGCAATGTCGGGGAGACAAGATTCGCCATCGTAGCTTCAATCTGTTCCACTACACCGCCA
1 TTAATTGCAATGTCAGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGCCA
** * * *
51278886 GGGAAGTAAGATCCGCCATTGTGGCTTCAATCTTT
66 GGGAAACAAGATTCACCGTTGTGGCTTCAATCTTT
* * *
51278921 TTAATTTCAATGTCAGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTATCCCACTACACCGCCA
1 TTAATTGCAATGTCAGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGCCA
51278986 GGGAAACAAGATTCACCGTTGTGGCTTCAATCTTT
66 GGGAAACAAGATTCACCGTTGTGGCTTCAATCTTT
* * * *
51279021 TTTATTGCAATGTTAGGGAAACCAGATCCGCCGTCGTGGCTTCAATCTGTTCCAATACACCGCCA
1 TTAATTGCAATGTCAGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGCCA
*
51279086 GGGAAACAAGATTCATCGTTGTGGCTTCAATCT
66 GGGAAACAAGATTCACCGTTGTGGCTTCAATCT
51279119 ATTCCACTAT
Statistics
Matches: 176, Mismatches: 22, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
100 176 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (100 bp):
TTAATTGCAATGTCAGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGCCA
GGGAAACAAGATTCACCGTTGTGGCTTCAATCTTT
Found at i:51280644 original size:14 final size:14
Alignment explanation
Indices: 51280613--51280643 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
51280603 CTCATTTTCC
51280613 TTTTCTTCTTTCTT
1 TTTTCTTCTTTCTT
51280627 TTTTCTT-TTTCTT
1 TTTTCTTCTTTCTT
51280640 TTTT
1 TTTT
51280644 TTTCCATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.59
14 7 0.41
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (14 bp):
TTTTCTTCTTTCTT
Found at i:51292654 original size:30 final size:30
Alignment explanation
Indices: 51292620--51292707 Score: 98
Period size: 30 Copynumber: 3.1 Consensus size: 30
51292610 ATTTCTTATG
51292620 CCAATATCTCAATA-CCATATCTTTGACTTT
1 CCAATAT-TCAATACCCATATCTTTGACTTT
**
51292650 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTCAATACCCATATCTTTGACTTT
*
51292680 ---AT-TT-GATACCCATATCTTTGACTTT
1 CCAATATTCAATACCCATATCTTTGACTTT
51292705 CCA
1 CCA
51292708 TAAATATGGA
Statistics
Matches: 52, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
25 21 0.40
26 2 0.04
27 2 0.04
29 4 0.08
30 23 0.44
ACGTcount: A:0.27, C:0.25, G:0.06, T:0.42
Consensus pattern (30 bp):
CCAATATTCAATACCCATATCTTTGACTTT
Found at i:51292682 original size:25 final size:25
Alignment explanation
Indices: 51292654--51292704 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
51292644 GACTTTCCAA
51292654 TATTTGATACCCATATCTTTGACTT
1 TATTTGATACCCATATCTTTGACTT
51292679 TATTTGATACCCATATCTTTGACTT
1 TATTTGATACCCATATCTTTGACTT
51292704 T
1 T
51292705 CCATAAATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.24, C:0.20, G:0.08, T:0.49
Consensus pattern (25 bp):
TATTTGATACCCATATCTTTGACTT
Found at i:51307594 original size:22 final size:21
Alignment explanation
Indices: 51307569--51307614 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
51307559 TATTTATCTT
*
51307569 ATAGATATATTATAATAATTTA
1 ATAGATATAATATAA-AATTTA
* *
51307591 ATAGATTTAATATTAAATTTA
1 ATAGATATAATATAAAATTTA
51307612 ATA
1 ATA
51307615 TAATATTTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 9 0.43
22 12 0.57
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (21 bp):
ATAGATATAATATAAAATTTA
Found at i:51313198 original size:37 final size:35
Alignment explanation
Indices: 51313116--51313208 Score: 98
Period size: 37 Copynumber: 2.5 Consensus size: 35
51313106 TTTAATAAAT
* *
51313116 TTAATATTAAATTAA-ATTAAATTCTTATCTTGATA
1 TTAATATT-AATTAATATTAAATTATTATCTTAATA
*
51313151 TTATTTTATTAATGTAATATTAAATTAATTATCTTAATA
1 TTA--ATATTAAT-TAATATTAAATT-ATTATCTTAATA
51313190 TTAATATTAATTTAATATT
1 TTAATATTAA-TTAATATT
51313209 TATCTTATAG
Statistics
Matches: 48, Mismatches: 4, Indels: 10
0.77 0.06 0.16
Matches are distributed among these distances:
35 3 0.06
36 3 0.06
37 20 0.42
38 9 0.19
39 13 0.27
ACGTcount: A:0.42, C:0.03, G:0.02, T:0.53
Consensus pattern (35 bp):
TTAATATTAATTAATATTAAATTATTATCTTAATA
Found at i:51313251 original size:61 final size:58
Alignment explanation
Indices: 51313167--51313299 Score: 171
Period size: 61 Copynumber: 2.2 Consensus size: 58
51313157 TATTAATGTA
* * *
51313167 ATATTAAATTAAT-TATCTTAATATT-AATATTAATTTAATATTTATCTTATAGATAAATATT
1 ATATTAATTTAATAGAT-TTAATATTAAAT-TTAATCTAATATTTATC-T-T-GATAAATATT
*
51313228 CTATTAATTTAATAGATTTAATATTAAATTTAATCTAATATTTATCTTGATAAATATT
1 ATATTAATTTAATAGATTTAATATTAAATTTAATCTAATATTTATCTTGATAAATATT
51313286 ATATTAATTTAATA
1 ATATTAATTTAATA
51313300 CTAAAGTGAT
Statistics
Matches: 65, Mismatches: 5, Indels: 7
0.84 0.06 0.09
Matches are distributed among these distances:
58 23 0.35
59 1 0.02
60 1 0.02
61 35 0.54
62 5 0.08
ACGTcount: A:0.44, C:0.04, G:0.02, T:0.50
Consensus pattern (58 bp):
ATATTAATTTAATAGATTTAATATTAAATTTAATCTAATATTTATCTTGATAAATATT
Found at i:51313312 original size:58 final size:60
Alignment explanation
Indices: 51313167--51313325 Score: 157
Period size: 58 Copynumber: 2.6 Consensus size: 60
51313157 TATTAATGTA
* * * *
51313167 ATATTAAATTAATTATCTTAATATT-AATATTAATTTAATATTTATCTTATAGATAAATATT
1 ATATTAATTTAA-TAACTAAATATTAAAT-TTAATCTAATATTTATCTTATAGATAAATATT
* * *
51313228 CTATTAATTTAATAGATTTAATATTAAATTTAATCTAATATTTATC-T-T-GATAAATATT
1 ATATTAATTTAATA-ACTAAATATTAAATTTAATCTAATATTTATCTTATAGATAAATATT
*
51313286 ATATTAATTTAAT-ACTAAAGTGATTAAGTTTAATCATAAT
1 ATATTAATTTAATAACTAAA-T-ATTAAATTTAATC-TAAT
51313326 TGAACTCTCT
Statistics
Matches: 84, Mismatches: 9, Indels: 12
0.80 0.09 0.11
Matches are distributed among these distances:
56 4 0.05
57 1 0.01
58 34 0.40
59 5 0.06
60 3 0.04
61 34 0.40
62 3 0.04
ACGTcount: A:0.43, C:0.04, G:0.04, T:0.48
Consensus pattern (60 bp):
ATATTAATTTAATAACTAAATATTAAATTTAATCTAATATTTATCTTATAGATAAATATT
Found at i:51316974 original size:7 final size:7
Alignment explanation
Indices: 51316956--51316984 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
51316946 AAAGGAAAAT
51316956 AAAATT-
1 AAAATTA
51316962 AAAATTA
1 AAAATTA
51316969 AAAATTA
1 AAAATTA
51316976 AAAATTA
1 AAAATTA
51316983 AA
1 AA
51316985 TCAAAATTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 6 0.27
7 16 0.73
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (7 bp):
AAAATTA
Found at i:51334608 original size:43 final size:44
Alignment explanation
Indices: 51334450--51334609 Score: 145
Period size: 43 Copynumber: 3.7 Consensus size: 44
51334440 AACGTGACAT
* * *
51334450 CGTGTAAGACCACGTCTAGGACGTTGGCCTCGATT-TTGA-GAATTA
1 CGTGTAAGACCACGTCTGGGACATTGGCATCG-TTGTT-ATG-ATTA
* * *
51334495 TGTGTAAGACCATGTTTGGGACATTGG---CGTTGTATATGATTA
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGTTGT-TATGATTA
*
51334537 CGTGTAAGACC-CTGTCTGGGACAATGGCATCGTTGTT-TGATTA
1 CGTGTAAGACCAC-GTCTGGGACATTGGCATCGTTGTTATGATTA
* *
51334580 CATGTAAGACCACGTCTGGGACGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACATTGGCAT
51334610 TGTGCGAGCT
Statistics
Matches: 95, Mismatches: 12, Indels: 18
0.76 0.10 0.14
Matches are distributed among these distances:
41 2 0.02
42 30 0.32
43 33 0.35
44 2 0.02
45 28 0.29
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.31
Consensus pattern (44 bp):
CGTGTAAGACCACGTCTGGGACATTGGCATCGTTGTTATGATTA
Found at i:51336913 original size:28 final size:30
Alignment explanation
Indices: 51336875--51336933 Score: 77
Period size: 28 Copynumber: 2.0 Consensus size: 30
51336865 AGCTTTGGTC
*
51336875 TTTCTCCTTTTCTTTCCTTT-CTCTTTCTT
1 TTTCTCCTTTTCTTTCATTTGCTCTTTCTT
* *
51336904 TTTC-CCTTTTGTTTCATTTGTTCTTTCTT
1 TTTCTCCTTTTCTTTCATTTGCTCTTTCTT
51336933 T
1 T
51336934 CTTTTTTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 13 0.50
29 13 0.50
ACGTcount: A:0.02, C:0.25, G:0.03, T:0.69
Consensus pattern (30 bp):
TTTCTCCTTTTCTTTCATTTGCTCTTTCTT
Found at i:51338000 original size:46 final size:46
Alignment explanation
Indices: 51337944--51338056 Score: 163
Period size: 46 Copynumber: 2.5 Consensus size: 46
51337934 GATGCCAAAT
* * *
51337944 TGTCTTTCAACCATGGTCTTAATCATTTTCCATCGTGTTGTCATAG
1 TGTCTTTCAACTATGGTCTTAATCATTTTCCATCATGTTGCCATAG
* **
51337990 TGTCTTTCAACTATGGTCTTATTCATTTTCTGTCATGTTGCCATAG
1 TGTCTTTCAACTATGGTCTTAATCATTTTCCATCATGTTGCCATAG
*
51338036 TGTCTTTCAAATATGGTCTTA
1 TGTCTTTCAACTATGGTCTTA
51338057 TTCGTTTGAT
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 60 1.00
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.46
Consensus pattern (46 bp):
TGTCTTTCAACTATGGTCTTAATCATTTTCCATCATGTTGCCATAG
Found at i:51338057 original size:46 final size:46
Alignment explanation
Indices: 51337933--51338198 Score: 182
Period size: 45 Copynumber: 5.8 Consensus size: 46
51337923 ATTCTCAACT
* * ** *
51337933 TGATGCCAAATTGTCTTTCAACCATGGTCTTAATCATTTTCCATCG
1 TGATGCCATAGTGTCTTTCAAATATGGTCTTAATCATTTTCTATCG
* * * * * *
51337979 TGTTGTCATAGTGTCTTTCAACTATGGTCTTATTCATTTTCTGTCA
1 TGATGCCATAGTGTCTTTCAAATATGGTCTTAATCATTTTCTATCG
* * * ** *
51338025 TGTTGCCATAGTGTCTTTCAAATATGGTCTTATTCGTTTGAT-TTG
1 TGATGCCATAGTGTCTTTCAAATATGGTCTTAATCATTTTCTATCG
* * * * * ***
51338070 TGATACCATGGCGTCTTTCAAATATGGTTTTACTCGA--TAGAATCG
1 TGATGCCATAGTGTCTTTCAAATATGGTCTTAATC-ATTTTCTATCG
** * ** * *
51338115 TGATGCCATAACGTCTTTCAAATATGGTCTTACTC-GCTTCTGGT-A
1 TGATGCCATAGTGTCTTTCAAATATGGTCTTAATCATTTTCT-ATCG
*
51338160 TGATGCCATAGTGTCTTTCAACTATGGTCTTAATCATTT
1 TGATGCCATAGTGTCTTTCAAATATGGTCTTAATCATTT
51338199 CCTTTAAGCC
Statistics
Matches: 172, Mismatches: 42, Indels: 12
0.76 0.19 0.05
Matches are distributed among these distances:
44 1 0.01
45 95 0.55
46 76 0.44
ACGTcount: A:0.22, C:0.19, G:0.17, T:0.42
Consensus pattern (46 bp):
TGATGCCATAGTGTCTTTCAAATATGGTCTTAATCATTTTCTATCG
Found at i:51338647 original size:16 final size:16
Alignment explanation
Indices: 51338623--51338653 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
51338613 TCCCATGAAT
*
51338623 TTTACTCCTTTAACAA
1 TTTAATCCTTTAACAA
51338639 TTTAATCCTTTAACA
1 TTTAATCCTTTAACA
51338654 TTAAAATTAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.23, G:0.00, T:0.45
Consensus pattern (16 bp):
TTTAATCCTTTAACAA
Found at i:51345034 original size:45 final size:46
Alignment explanation
Indices: 51344688--51345033 Score: 241
Period size: 45 Copynumber: 7.6 Consensus size: 46
51344678 GGTGCCATGG
* * * * *
51344688 TGTCTTTCAACCATGGTCTTATTTATTCTCG--ACTTGATATCAAAA
1 TGTCTTTCAACTATGGTCTTATTCATT-TCGATACATGATGTCATAA
* * * * *
51344733 TGTCTTTCAACCATGGTCTTATTCATTTTCCG--CCATGTTTTCATAG
1 TGTCTTTCAACTATGGTCTTATTCA-TTT-CGATACATGATGTCATAA
* * * * *
51344779 TGTCTTTAAACTATGATCTTATTCATTTTTCG-T-CGTGTTGCCATAGA
1 TGTCTTTCAACTATGGTCTTATTCA--TTTCGATACATGATGTCATA-A
* *
51344826 T-TCTTTCAACTATGGTCTTATTCGTTT-GATTCATGATGTCATAA
1 TGTCTTTCAACTATGGTCTTATTCATTTCGATACATGATGTCATAA
* * * *
51344870 CGTCTTTCAACTATGGTCTTATTTATTT-AATTCATGATGTCATAA
1 TGTCTTTCAACTATGGTCTTATTCATTTCGATACATGATGTCATAA
* * * * * * *
51344915 CGTCTTTCAACTATGTTCTTACTCTTTTCTGGT--ATGATGTCGTAG
1 TGTCTTTCAACTATGGTCTTATTCATTTC-GATACATGATGTCATAA
* * *
51344960 TGTCTTTCAATTATGGTCTTATTTATTTCCGATACA-G-TGCCATAA
1 TGTCTTTCAACTATGGTCTTATTCATTT-CGATACATGATGTCATAA
*
51345005 TGTCTTTCAACTATGGTCTTAATCATTTC
1 TGTCTTTCAACTATGGTCTTATTCATTTC
51345034 CTTTAACCCA
Statistics
Matches: 243, Mismatches: 45, Indels: 27
0.77 0.14 0.09
Matches are distributed among these distances:
43 1 0.00
44 6 0.02
45 162 0.67
46 67 0.28
47 7 0.03
ACGTcount: A:0.22, C:0.19, G:0.13, T:0.46
Consensus pattern (46 bp):
TGTCTTTCAACTATGGTCTTATTCATTTCGATACATGATGTCATAA
Found at i:51349319 original size:20 final size:21
Alignment explanation
Indices: 51349294--51349333 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
51349284 TCAAAACAGT
51349294 AAATTT-CGTCACAACATCAG
1 AAATTTACGTCACAACATCAG
*
51349314 AAATTTAAGGTCACAACATC
1 AAATTT-ACGTCACAACATC
51349334 GCTCTCTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
22 11 0.65
ACGTcount: A:0.42, C:0.23, G:0.10, T:0.25
Consensus pattern (21 bp):
AAATTTACGTCACAACATCAG
Found at i:51353954 original size:16 final size:15
Alignment explanation
Indices: 51353935--51353999 Score: 50
Period size: 17 Copynumber: 4.5 Consensus size: 15
51353925 ACTACTAAGA
51353935 ATTTTATTAAATTATT
1 ATTTTATTAAATTA-T
*
51353951 ATTTTTGTTAAATTAT
1 A-TTTTATTAAATTAT
*
51353967 A-TTTAAT-AA-TA-
1 ATTTTATTAAATTAT
51353978 ATTATT-TTAAATTAT
1 ATT-TTATTAAATTAT
51353993 ATTTTAT
1 ATTTTAT
51354000 AGTATTATAT
Statistics
Matches: 38, Mismatches: 4, Indels: 15
0.67 0.07 0.26
Matches are distributed among these distances:
11 1 0.03
12 4 0.11
13 6 0.16
14 8 0.21
15 4 0.11
16 3 0.08
17 12 0.32
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (15 bp):
ATTTTATTAAATTAT
Found at i:51353961 original size:17 final size:16
Alignment explanation
Indices: 51353936--51353970 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
51353926 CTACTAAGAA
51353936 TTTTATTAAATTATTAT
1 TTTTATTAAATTA-TAT
*
51353953 TTTTGTTAAATTATAT
1 TTTTATTAAATTATAT
51353969 TT
1 TT
51353971 AATAATAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (16 bp):
TTTTATTAAATTATAT
Found at i:51354054 original size:119 final size:120
Alignment explanation
Indices: 51353913--51354154 Score: 450
Period size: 120 Copynumber: 2.0 Consensus size: 120
51353903 TGATACAATC
*
51353913 ATAAGAATATTTACTACTAAGAATTTTATTAAATTAT-TATTTTTGTTAAATTATATTTAATAAT
1 ATAAGAATATTTAATACTAAGAATTTTATTAAATTATATATTTTTGTTAAATTATATTTAATAAT
* *
51353977 AATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCAT
66 AATTATTTTAAATTATATTTTATAATATTATATATTATAATTTTAGTAAATTCAT
51354032 ATAAGAATATTTAATACTAAGAATTTTATTAAATTATATATTTTTGTTAAATTATATTTAATAAT
1 ATAAGAATATTTAATACTAAGAATTTTATTAAATTATATATTTTTGTTAAATTATATTTAATAAT
51354097 AATTATTTTAAATTATATTTTATAATATTATATATTATAATTTTAGTAAATTCAT
66 AATTATTTTAAATTATATTTTATAATATTATATATTATAATTTTAGTAAATTCAT
51354152 ATA
1 ATA
51354155 TTTTATTAAA
Statistics
Matches: 119, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
119 36 0.30
120 83 0.70
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.52
Consensus pattern (120 bp):
ATAAGAATATTTAATACTAAGAATTTTATTAAATTATATATTTTTGTTAAATTATATTTAATAAT
AATTATTTTAAATTATATTTTATAATATTATATATTATAATTTTAGTAAATTCAT
Found at i:51354076 original size:18 final size:17
Alignment explanation
Indices: 51354054--51354188 Score: 95
Period size: 18 Copynumber: 8.0 Consensus size: 17
51354044 AATACTAAGA
51354054 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
*
51354071 ATTTTTGTTAAA-T-TAT
1 A-TTTTATTAAATTATAT
* *
51354087 A-TTTAAT-AATAAT-T
1 ATTTTATTAAATTATAT
* *
51354101 ATTTTAAATTATATTTTAT
1 ATTTT--ATTAAATTATAT
* *
51354120 AATATTA-TATATTATA-
1 -ATTTTATTAAATTATAT
*
51354136 ATTTTAGTAAATTCATAT
1 ATTTTATTAAATT-ATAT
51354154 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
51354171 ATTTTTATTAAATTATAT
1 A-TTTTATTAAATTATAT
51354189 TTAATAATAA
Statistics
Matches: 92, Mismatches: 13, Indels: 25
0.71 0.10 0.19
Matches are distributed among these distances:
13 2 0.02
14 6 0.07
15 9 0.10
16 9 0.10
17 20 0.22
18 41 0.45
19 1 0.01
20 4 0.04
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.57
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:51354107 original size:26 final size:25
Alignment explanation
Indices: 51354069--51354208 Score: 85
Period size: 26 Copynumber: 5.5 Consensus size: 25
51354059 ATTAAATTAT
*
51354069 ATATTTTTGTTAAATTATATTTAATA
1 ATATTATT-TTAAATTATATTTAATA
*
51354095 ATAATTATTTTAAATTATATTTTATA
1 AT-ATTATTTTAAATTATATTTAATA
* * * *
51354121 ATATTATATATTATAATTTTAGTAAATTC
1 ATATTAT-T-TTA-AATTATATTTAA-TA
*
51354150 ATA-TATTTT--ATTA-AATT-AT-
1 ATATTATTTTAAATTATATTTAATA
*
51354169 ATATTTTTATTAAATTATATTTAATA
1 ATATTATT-TTAAATTATATTTAATA
*
51354195 ATAATTATGTTAAA
1 AT-ATTATTTTAAA
51354209 ATATGATTAA
Statistics
Matches: 87, Mismatches: 14, Indels: 26
0.69 0.11 0.20
Matches are distributed among these distances:
19 3 0.03
20 4 0.05
21 3 0.03
22 2 0.02
23 7 0.08
24 3 0.03
25 7 0.08
26 30 0.34
27 13 0.15
28 11 0.13
29 4 0.05
ACGTcount: A:0.42, C:0.01, G:0.02, T:0.55
Consensus pattern (25 bp):
ATATTATTTTAAATTATATTTAATA
Found at i:51354126 original size:15 final size:15
Alignment explanation
Indices: 51354082--51354137 Score: 57
Period size: 15 Copynumber: 4.0 Consensus size: 15
51354072 TTTTTGTTAA
*
51354082 ATTATATTTAATAAT
1 ATTATATTTTATAAT
*
51354097 AAT-TA-TTT-TAA-
1 ATTATATTTTATAAT
51354108 ATTATATTTTATAAT
1 ATTATATTTTATAAT
*
51354123 ATTATATATTATAAT
1 ATTATATTTTATAAT
51354138 TTTAGTAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
11 2 0.06
12 5 0.15
13 5 0.15
14 5 0.15
15 16 0.48
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
ATTATATTTTATAAT
Found at i:51354155 original size:41 final size:40
Alignment explanation
Indices: 51353990--51354173 Score: 118
Period size: 41 Copynumber: 4.6 Consensus size: 40
51353980 TATTTTAAAT
* *
51353990 TATATTTTATAGTATTATATATTATGATTTTAGTAAATTCA
1 TATATTTTATAATATTATATATTATAATTTTAGTAAATT-A
* * * *
51354031 TATA----AGAATATT-TAATACTAAGAATTTTATTAAATTA
1 TATATTTTATAATATTAT-ATA-TTATAATTTTAGTAAATTA
* **
51354068 TATATTTTTGTTAA-ATTATAT-TTAATAATAATTATTTTAAA-T-
1 TATA-TTTT-ATAATATTATATATT-ATAAT--TT-TAGTAAATTA
51354110 TATATTTTATAATATTATATATTATAATTTTAGTAAATTCA
1 TATATTTTATAATATTATATATTATAATTTTAGTAAATT-A
51354151 TATATTTTATTAA-ATTATATATT
1 TATATTTTA-TAATATTATATATT
51354174 TTTATTAAAT
Statistics
Matches: 110, Mismatches: 14, Indels: 38
0.68 0.09 0.23
Matches are distributed among these distances:
36 1 0.01
37 14 0.13
38 19 0.17
39 3 0.03
40 4 0.04
41 43 0.39
42 14 0.13
43 6 0.05
44 6 0.05
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.53
Consensus pattern (40 bp):
TATATTTTATAATATTATATATTATAATTTTAGTAAATTA
Found at i:51354391 original size:39 final size:40
Alignment explanation
Indices: 51354333--51354439 Score: 110
Period size: 45 Copynumber: 2.6 Consensus size: 40
51354323 TTTTCCATTA
* *
51354333 TACTATTACACCTCCATTCCATTCAACCAAACACA-AGA-T
1 TACTATTACGCCTCTATTCCATTCAACCAAACA-ATAGATT
*
51354372 TACTATTACGCCTCTATTCCATTACATTCAACCAAACAATTGATT
1 TACTATTACGCCTCTATT-C----CATTCAACCAAACAATAGATT
*
51354417 TGCTATTACGCCTCTATTCCATT
1 TACTATTACGCCTCTATTCCATT
51354440 ACGCCTCTAT
Statistics
Matches: 57, Mismatches: 4, Indels: 13
0.77 0.05 0.18
Matches are distributed among these distances:
39 16 0.28
40 5 0.09
43 1 0.02
44 17 0.30
45 18 0.32
ACGTcount: A:0.32, C:0.30, G:0.05, T:0.34
Consensus pattern (40 bp):
TACTATTACGCCTCTATTCCATTCAACCAAACAATAGATT
Found at i:51354408 original size:44 final size:45
Alignment explanation
Indices: 51354345--51354441 Score: 144
Period size: 45 Copynumber: 2.2 Consensus size: 45
51354335 CTATTACACC
*
51354345 TCCATTCCATTCAACCAAACACA-AGA-TTACTATTACGCCTCTAT
1 TCCATTACATTCAACCAAACA-ATAGATTTACTATTACGCCTCTAT
* *
51354389 TCCATTACATTCAACCAAACAATTGATTTGCTATTACGCCTCTAT
1 TCCATTACATTCAACCAAACAATAGATTTACTATTACGCCTCTAT
51354434 TCCATTAC
1 TCCATTAC
51354442 GCCTCTATTC
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
43 1 0.02
44 22 0.46
45 25 0.52
ACGTcount: A:0.32, C:0.30, G:0.05, T:0.33
Consensus pattern (45 bp):
TCCATTACATTCAACCAAACAATAGATTTACTATTACGCCTCTAT
Found at i:51354442 original size:16 final size:16
Alignment explanation
Indices: 51354421--51354453 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
51354411 TTGATTTGCT
51354421 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
51354437 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
51354453 A
1 A
51354454 ATACAGCGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.21, C:0.36, G:0.06, T:0.36
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:51357768 original size:22 final size:23
Alignment explanation
Indices: 51357740--51357784 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
51357730 ATCCAATCTT
51357740 AGATATGA-TATGCAATCTTAGA
1 AGATATGATTATGCAATCTTAGA
* *
51357762 AGATATGATTTTGTAATCTTAGA
1 AGATATGATTATGCAATCTTAGA
51357785 GATTTAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.38, C:0.07, G:0.18, T:0.38
Consensus pattern (23 bp):
AGATATGATTATGCAATCTTAGA
Found at i:51367757 original size:16 final size:16
Alignment explanation
Indices: 51367736--51367768 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
51367726 ATTTTAATTC
51367736 AGTCTATCAATATGGT
1 AGTCTATCAATATGGT
51367752 AGTCTATCAATATGGT
1 AGTCTATCAATATGGT
51367768 A
1 A
51367769 CTCGTTTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.33, C:0.12, G:0.18, T:0.36
Consensus pattern (16 bp):
AGTCTATCAATATGGT
Found at i:51367952 original size:33 final size:33
Alignment explanation
Indices: 51367909--51367983 Score: 132
Period size: 33 Copynumber: 2.3 Consensus size: 33
51367899 TTTAAGAATC
*
51367909 TATTAAAAATACTTAAATTAACATATACATATA
1 TATTTAAAATACTTAAATTAACATATACATATA
*
51367942 TATTTAAAATACTTAAATTAACTTATACATATA
1 TATTTAAAATACTTAAATTAACATATACATATA
51367975 TATTTAAAA
1 TATTTAAAA
51367984 GAAAACATGT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 40 1.00
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (33 bp):
TATTTAAAATACTTAAATTAACATATACATATA
Found at i:51371948 original size:20 final size:19
Alignment explanation
Indices: 51371918--51371968 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
51371908 AAGAAACTGC
51371918 TAAGC-ATGATTAATGGAGA
1 TAAGCAATGATTAAT-GAGA
*
51371937 TAAGCAATGATTGATGAGA
1 TAAGCAATGATTAATGAGA
*
51371956 TAA-AAATGATTAA
1 TAAGCAATGATTAA
51371969 GAAAAACTCA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
18 8 0.29
19 12 0.43
20 8 0.29
ACGTcount: A:0.47, C:0.04, G:0.22, T:0.27
Consensus pattern (19 bp):
TAAGCAATGATTAATGAGA
Found at i:51378989 original size:53 final size:53
Alignment explanation
Indices: 51378909--51379014 Score: 176
Period size: 53 Copynumber: 2.0 Consensus size: 53
51378899 GTGTAGTTAT
* * * *
51378909 TTTATTTAGCCCTGCGAGTGGATTTACGGACACTGACTTTATACCGTAGCTTC
1 TTTATTCAGCCCTACGAGTGGATTTACGGACACTGACTTTAAACCGCAGCTTC
51378962 TTTATTCAGCCCTACGAGTGGATTTACGGACACTGACTTTAAACCGCAGCTTC
1 TTTATTCAGCCCTACGAGTGGATTTACGGACACTGACTTTAAACCGCAGCTTC
51379015 CTCTTCATGG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
53 49 1.00
ACGTcount: A:0.23, C:0.25, G:0.20, T:0.33
Consensus pattern (53 bp):
TTTATTCAGCCCTACGAGTGGATTTACGGACACTGACTTTAAACCGCAGCTTC
Found at i:51383155 original size:305 final size:305
Alignment explanation
Indices: 51382604--51383221 Score: 1011
Period size: 305 Copynumber: 2.0 Consensus size: 305
51382594 AGCTTCACAT
* *
51382604 TCTAAAATAAGGAAATCCACAGAAAAATAAATTTATCTACTCTTACCAGCACATAGTCAATTTTA
1 TCTAAAATAAGAAAATCCACAGAAAAATAAATTTATCTACTCTTACCAACACATAGTCAATTTTA
* *
51382669 CCTTCCGAATGTGCGTAGGATCGATCAGTTAGTTGCAACGTAACAGTAGTTGGTCTTACTTTCCT
66 CCTTCCGAATGTGCGTAGGATCGATCAGCTAGTTGCAACGTAACAGTAGTAGGTCTTACTTTCCT
*
51382734 AACTTCCTGAAAATAGACGTAGGCATTAGATTTACACTCACTTCTAAATCACATAATGCCTTACC
131 AACTTCCTGAAAATAGACGTAGGCATTAGATTTAAACTCACTTCTAAATCACATAATGCCTTACC
** * *
51382799 AACATAATGATTTCCAATTGAACATGGGATAGTGAAACTTCCTGGGTCATTCAACTTTGGAGGTA
196 AACATAATGATTTCCAATTGAACATAAGATAGTGAAACTCCCTGGGTCATTCAACTTTAGAGGTA
*
51382864 ATTTATTCATCAACATTGTTGTTCACCCTTCAATGAGAGCAACTG
261 ATTTATTCATCAACATTGTTGTTCACCCTTCAATGAGAGCAACAG
*** *
51382909 TCTAAAATAAGAAAATTTTCAGAAAAATAAATTTATCTACTCTTACCAACACATATTCAATTTTA
1 TCTAAAATAAGAAAATCCACAGAAAAATAAATTTATCTACTCTTACCAACACATAGTCAATTTTA
* * * * * * *
51382974 CCTTTCGGATGTGTGTAGGATCGATCAGCTAGTTGTAACGTAACCGTAGTAGGTCTTATTTTTCT
66 CCTTCCGAATGTGCGTAGGATCGATCAGCTAGTTGCAACGTAACAGTAGTAGGTCTTACTTTCCT
* *
51383039 AACTTCTTGAAAATAGACGTAGGCATTAGATTTAAACTCACTTTTAAATCACATAATGCCTTACC
131 AACTTCCTGAAAATAGACGTAGGCATTAGATTTAAACTCACTTCTAAATCACATAATGCCTTACC
51383104 AACATAATGATTTCCAATTGAACATAAGATAGTGAAACTCCCTGGGTCATTCAACTTTAGAGGTA
196 AACATAATGATTTCCAATTGAACATAAGATAGTGAAACTCCCTGGGTCATTCAACTTTAGAGGTA
*
51383169 ATTTATTCATCAACATTGTTGTTCACCCTTCAGTGAGAGCAACAG
261 ATTTATTCATCAACATTGTTGTTCACCCTTCAATGAGAGCAACAG
*
51383214 TCTCAAAT
1 TCTAAAAT
51383222 TCTCCCAATC
Statistics
Matches: 288, Mismatches: 25, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
305 288 1.00
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.33
Consensus pattern (305 bp):
TCTAAAATAAGAAAATCCACAGAAAAATAAATTTATCTACTCTTACCAACACATAGTCAATTTTA
CCTTCCGAATGTGCGTAGGATCGATCAGCTAGTTGCAACGTAACAGTAGTAGGTCTTACTTTCCT
AACTTCCTGAAAATAGACGTAGGCATTAGATTTAAACTCACTTCTAAATCACATAATGCCTTACC
AACATAATGATTTCCAATTGAACATAAGATAGTGAAACTCCCTGGGTCATTCAACTTTAGAGGTA
ATTTATTCATCAACATTGTTGTTCACCCTTCAATGAGAGCAACAG
Found at i:51386552 original size:17 final size:17
Alignment explanation
Indices: 51386530--51386576 Score: 85
Period size: 17 Copynumber: 2.8 Consensus size: 17
51386520 TCTCATATTT
51386530 TGATACCCATATCTTTC
1 TGATACCCATATCTTTC
*
51386547 TGATACCTATATCTTTC
1 TGATACCCATATCTTTC
51386564 TGATACCCATATC
1 TGATACCCATATC
51386577 ATTGACTTTC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.26, C:0.28, G:0.06, T:0.40
Consensus pattern (17 bp):
TGATACCCATATCTTTC
Found at i:51401405 original size:17 final size:17
Alignment explanation
Indices: 51401383--51401432 Score: 91
Period size: 17 Copynumber: 2.9 Consensus size: 17
51401373 TCTCAGATTT
51401383 TGATACCCATATCTTTC
1 TGATACCCATATCTTTC
*
51401400 TGATACCTATATCTTTC
1 TGATACCCATATCTTTC
51401417 TGATACCCATATCTTT
1 TGATACCCATATCTTT
51401433 GACTTTCTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 31 1.00
ACGTcount: A:0.24, C:0.26, G:0.06, T:0.44
Consensus pattern (17 bp):
TGATACCCATATCTTTC
Found at i:51403686 original size:69 final size:69
Alignment explanation
Indices: 51403455--51403689 Score: 211
Period size: 69 Copynumber: 3.4 Consensus size: 69
51403445 TTCGTGTGGC
** * * * * * * **
51403455 CCAAAACAATTAGCGAGATTAAAGCTCTCAGCTGTCATATTAAGGTTCGTAGGCAAAGAGTCGTA
1 CCAAAACAATTAGCGAGAGCAAAGCTCCCAACTGTCATATTAAGGTTTGCAGGAAAAGAGCCACA
51403520 ACCT
66 ACCT
* * * ** * ** *
51403524 CTAAAATAAATAGTTAGAGCAAACCTCCCAACTGTCATATTAAGGTTCT-CAGGTGAATAGCCAC
1 CCAAAACAATTAGCGAGAGCAAAGCTCCCAACTGTCATATTAAGGTT-TGCAGGAAAAGAGCCAC
51403588 AACCT
65 AACCT
* * * *
51403593 TCAAAACAGTTACCGAGAGCAAAGCTCCCAATTGTCATATTAAGGTTTGCAGGAAAAGAGCCACA
1 CCAAAACAATTAGCGAGAGCAAAGCTCCCAACTGTCATATTAAGGTTTGCAGGAAAAGAGCCACA
51403658 ACCT
66 ACCT
* * * *
51403662 CCAAAATAGTTAGCAAGAGTAAAGCTCC
1 CCAAAACAATTAGCGAGAGCAAAGCTCC
51403690 TAGTTGTGTC
Statistics
Matches: 128, Mismatches: 36, Indels: 4
0.76 0.21 0.02
Matches are distributed among these distances:
68 1 0.01
69 127 0.99
ACGTcount: A:0.37, C:0.22, G:0.18, T:0.23
Consensus pattern (69 bp):
CCAAAACAATTAGCGAGAGCAAAGCTCCCAACTGTCATATTAAGGTTTGCAGGAAAAGAGCCACA
ACCT
Found at i:51405320 original size:69 final size:69
Alignment explanation
Indices: 51405207--51405527 Score: 394
Period size: 69 Copynumber: 4.7 Consensus size: 69
51405197 AATGCATGAA
* *
51405207 ATATTAAGGTTCGCAGGCGAAGAACCGCAACCTCCAAAATAGTTAGCGAGAGCAAAGCTCCCAAC
1 ATATTAAGGTTCGCAGGCGAAGAACCGCAACCTCCAAAACAGTTAGCGAGAGCAAAGCTCCCAAT
51405272 TGTC
66 TGTC
* * * * *
51405276 ATATTAAGGTTCGCAGGCGAAGAGCCACAACCTCCAAAACAGTTAGTGAGAGCAAAGCTCCTAGT
1 ATATTAAGGTTCGCAGGCGAAGAACCGCAACCTCCAAAACAGTTAGCGAGAGCAAAGCTCCCAAT
51405341 TGTC
66 TGTC
** ** *
51405345 ATATTAAGGTTCATAGGCGAAGAGTCGCAACCTCCAAAATAGTTA-CTGAGAGCAAAGCTCCCAA
1 ATATTAAGGTTCGCAGGCGAAGAACCGCAACCTCCAAAACAGTTAGC-GAGAGCAAAGCTCCCAA
51405409 TTGTC
65 TTGTC
* * * *
51405414 ATATTAAGGTTTGCAGGCGAAGAA-CGCAACCTCCAAAAAAATTAGCGAGAGCAAAGCTCCCAGT
1 ATATTAAGGTTCGCAGGCGAAGAACCGCAACCTCCAAAACAGTTAGCGAGAGCAAAGCTCCCAAT
*
51405478 TATC
66 TGTC
* * * ** * * *
51405482 ATATAAAGGTTTGAAGATGAAGAACCACAACCTCCAAGACATTTAG
1 ATATTAAGGTTCGCAGGCGAAGAACCGCAACCTCCAAAACAGTTAG
51405528 TGAAACCAAA
Statistics
Matches: 218, Mismatches: 31, Indels: 6
0.85 0.12 0.02
Matches are distributed among these distances:
68 58 0.27
69 160 0.73
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.20
Consensus pattern (69 bp):
ATATTAAGGTTCGCAGGCGAAGAACCGCAACCTCCAAAACAGTTAGCGAGAGCAAAGCTCCCAAT
TGTC
Found at i:51417282 original size:32 final size:32
Alignment explanation
Indices: 51417228--51417289 Score: 99
Period size: 32 Copynumber: 1.9 Consensus size: 32
51417218 GAGAGAGGTG
51417228 AAGTTGGCACCTTGGAGGGTTGACTTCAATCA
1 AAGTTGGCACCTTGGAGGGTTGACTTCAATCA
*
51417260 AAGTTGGCTCC-TGGAGGTGTTGACTTCAAT
1 AAGTTGGCACCTTGGAGG-GTTGACTTCAAT
51417290 TTACGTACCT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
31 6 0.21
32 22 0.79
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.31
Consensus pattern (32 bp):
AAGTTGGCACCTTGGAGGGTTGACTTCAATCA
Found at i:51420194 original size:28 final size:28
Alignment explanation
Indices: 51420154--51420211 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
51420144 ATTTTGAATA
51420154 CATAGTGTATTCACATATATTCACATTT
1 CATAGTGTATTCACATATATTCACATTT
51420182 CATAGTGTATTCACATATATTCACATTT
1 CATAGTGTATTCACATATATTCACATTT
51420210 CA
1 CA
51420212 GAGAACTTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.33, C:0.19, G:0.07, T:0.41
Consensus pattern (28 bp):
CATAGTGTATTCACATATATTCACATTT
Found at i:51421032 original size:28 final size:26
Alignment explanation
Indices: 51421001--51421055 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 26
51420991 CTTTTTTGAG
*
51421001 TTAATAAATTCTCTTTGAGTTTTTCTTT
1 TTAAGAAATTCTC-TTGAG-TTTTCTTT
* *
51421029 TTAAGAATTTTTCTTGAGTTTTCTTT
1 TTAAGAAATTCTCTTGAGTTTTCTTT
51421055 T
1 T
51421056 AGAAGAGTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 9 0.38
27 5 0.21
28 10 0.42
ACGTcount: A:0.20, C:0.09, G:0.09, T:0.62
Consensus pattern (26 bp):
TTAAGAAATTCTCTTGAGTTTTCTTT
Found at i:51421061 original size:27 final size:27
Alignment explanation
Indices: 51421015--51421066 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
51421005 TAAATTCTCT
*
51421015 TTGAGTTTTTCTTTTTAAGAATTTTTC
1 TTGAGTTTTTCTTTTGAAGAATTTTTC
*
51421042 TTGAG-TTTTCTTTTAGAAGAGTTTT
1 TTGAGTTTTTCTTTT-GAAGAATTTT
51421067 AACAGTCTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 9 0.41
27 13 0.59
ACGTcount: A:0.19, C:0.06, G:0.15, T:0.60
Consensus pattern (27 bp):
TTGAGTTTTTCTTTTGAAGAATTTTTC
Found at i:51421066 original size:26 final size:27
Alignment explanation
Indices: 51421015--51421066 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 27
51421005 TAAATTCTCT
* *
51421015 TTGAGTTTTTCTTTTTAAGAATTTTTC
1 TTGAGTTTTTCTTTTGAAGAAGTTTTC
51421042 TTGAG-TTTTCTTTTAGAAG-AGTTTT
1 TTGAGTTTTTCTTTT-GAAGAAGTTTT
51421067 AACAGTCTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
26 14 0.64
27 8 0.36
ACGTcount: A:0.19, C:0.06, G:0.15, T:0.60
Consensus pattern (27 bp):
TTGAGTTTTTCTTTTGAAGAAGTTTTC
Found at i:51421269 original size:18 final size:19
Alignment explanation
Indices: 51421231--51421273 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
51421221 ATTTATCTTC
51421231 TTTATTGTTCTAATCTTTTA
1 TTTATTGTTCT-ATCTTTTA
*
51421251 TTTATTGTTCT-TTTTTTA
1 TTTATTGTTCTATCTTTTA
51421269 TTTAT
1 TTTAT
51421274 CTTAGTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 11 0.50
20 11 0.50
ACGTcount: A:0.16, C:0.07, G:0.05, T:0.72
Consensus pattern (19 bp):
TTTATTGTTCTATCTTTTA
Found at i:51421276 original size:14 final size:16
Alignment explanation
Indices: 51421243--51421287 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 16
51421233 TATTGTTCTA
51421243 ATCTTTTATTTATTGT
1 ATCTTTTATTTATTGT
51421259 -TCTTTT-TTTATT-T
1 ATCTTTTATTTATTGT
51421272 ATCTTAGTTATTTATT
1 ATCTT--TTATTTATT
51421288 TAATTACTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
13 1 0.04
14 10 0.40
15 6 0.24
16 2 0.08
17 6 0.24
ACGTcount: A:0.18, C:0.07, G:0.04, T:0.71
Consensus pattern (16 bp):
ATCTTTTATTTATTGT
Found at i:51428788 original size:27 final size:27
Alignment explanation
Indices: 51428771--51429027 Score: 268
Period size: 27 Copynumber: 9.5 Consensus size: 27
51428761 GTATAACAGC
*
51428771 CATTTTATCCTATGGGGGTATTTCAGT
1 CATTTTACCCTATGGGGGTATTTCAGT
* **
51428798 CATTTTACCCTATAGGGGTATTTTGGT
1 CATTTTACCCTATGGGGGTATTTCAGT
*
51428825 CATTTTACCCTATGGGGGTATTTCGGT
1 CATTTTACCCTATGGGGGTATTTCAGT
**
51428852 CATTTTACCCTATGGGGGTATTTTGGT
1 CATTTTACCCTATGGGGGTATTTCAGT
* * * *
51428879 CATTTTACCTTACGAGGGTATTTCGGT
1 CATTTTACCCTATGGGGGTATTTCAGT
*
51428906 CATTTTACCCTATGGGGGTTATTT-TGAT
1 CATTTTACCCTATGGGGG-TATTTCAG-T
* * *
51428934 CATTTTACCTTATAGGTGTATTTC-GAT
1 CATTTTACCCTATGGGGGTATTTCAG-T
* *
51428961 TATTTTACCCTATGAGGGTATTTC-GAT
1 CATTTTACCCTATGGGGGTATTTCAG-T
* * * *
51428988 TATTTTATCCTATGAGGGTATTTTAGT
1 CATTTTACCCTATGGGGGTATTTCAGT
51429015 CATTTTACCCTAT
1 CATTTTACCCTAT
51429028 TTTGGAGTCT
Statistics
Matches: 199, Mismatches: 27, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
27 177 0.89
28 22 0.11
ACGTcount: A:0.19, C:0.16, G:0.20, T:0.45
Consensus pattern (27 bp):
CATTTTACCCTATGGGGGTATTTCAGT
Found at i:51428829 original size:54 final size:53
Alignment explanation
Indices: 51428771--51429027 Score: 309
Period size: 54 Copynumber: 4.7 Consensus size: 53
51428761 GTATAACAGC
* *
51428771 CATTTTATCCTATGGGGGTATTTCAGTCATTTTACCCTATAGGGGTATTTTGGT
1 CATTTTA-CCTATGGGGGTATTTCAGTCATTTTACCCTATGGGGGTATTTTGAT
* *
51428825 CATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTTGGT
1 CATTTTA-CCTATGGGGGTATTTCAGTCATTTTACCCTATGGGGGTATTTTGAT
* * *
51428879 CATTTTACCTTACGAGGGTATTTCGGTCATTTTACCCTATGGGGGTTATTTTGAT
1 CATTTTACC-TATGGGGGTATTTCAGTCATTTTACCCTATGGGGG-TATTTTGAT
* * * * *
51428934 CATTTTACCTTATAGGTGTATTTC-GATTATTTTACCCTATGAGGGTATTTCGAT
1 CATTTTACC-TATGGGGGTATTTCAG-TCATTTTACCCTATGGGGGTATTTTGAT
* * *
51428988 TATTTTATCCTATGAGGGTATTTTAGTCATTTTACCCTAT
1 CATTTTA-CCTATGGGGGTATTTCAGTCATTTTACCCTAT
51429028 TTTGGAGTCT
Statistics
Matches: 179, Mismatches: 19, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
53 2 0.01
54 129 0.72
55 48 0.27
ACGTcount: A:0.19, C:0.16, G:0.20, T:0.45
Consensus pattern (53 bp):
CATTTTACCTATGGGGGTATTTCAGTCATTTTACCCTATGGGGGTATTTTGAT
Found at i:51428858 original size:81 final size:81
Alignment explanation
Indices: 51428771--51429027 Score: 315
Period size: 81 Copynumber: 3.2 Consensus size: 81
51428761 GTATAACAGC
* *
51428771 CATTTTATCCTATGGGGGTATTTCAGTCATTTTACCCTATAG-GGGTATTTTGGTCATTTTACCC
1 CATTTTACCCTATGGGGGTATTTC-GTCATTTTACCCTATAGAGGGTATTTCGGTCATTTTACCC
*
51428835 TATGGGGGTATTTCGGT
65 TATGGGGGTATTTTGGT
*
51428852 CATTTTACCCTATGGGGGTATTTTGGTCATTTTA-CCT-TACGAGGGTATTTCGGTCATTTTACC
1 CATTTTACCCTATGGGGGTA-TTTCGTCATTTTACCCTATA-GAGGGTATTTCGGTCATTTTACC
*
51428915 CTATGGGGGTTATTTTGAT
64 CTATGGGGG-TATTTTGGT
* * * * * * *
51428934 CATTTTACCTTATAGGTGTATTTCGATTATTTTACCCTAT-GAGGGTATTTCGATTATTTTATCC
1 CATTTTACCCTATGGGGGTATTTCG-TCATTTTACCCTATAGAGGGTATTTCGGTCATTTTACCC
* *
51428998 TATGAGGGTATTTTAGT
65 TATGGGGGTATTTTGGT
51429015 CATTTTACCCTAT
1 CATTTTACCCTAT
51429028 TTTGGAGTCT
Statistics
Matches: 152, Mismatches: 17, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
79 2 0.01
80 4 0.03
81 80 0.53
82 62 0.41
83 3 0.02
84 1 0.01
ACGTcount: A:0.19, C:0.16, G:0.20, T:0.45
Consensus pattern (81 bp):
CATTTTACCCTATGGGGGTATTTCGTCATTTTACCCTATAGAGGGTATTTCGGTCATTTTACCCT
ATGGGGGTATTTTGGT
Found at i:51428980 original size:109 final size:108
Alignment explanation
Indices: 51428771--51429027 Score: 345
Period size: 109 Copynumber: 2.4 Consensus size: 108
51428761 GTATAACAGC
* * *
51428771 CATTTTATCCTATGGGGGTATTTCAGTCATTTTACCCTATAGGGGTATTTTGGTCATTTTACCCT
1 CATTTTATCCTACGAGGGTATTTCAGTCATTTTACCCTATAGGGGTATTTTGATCATTTTACCCT
* * * * *
51428836 ATGGGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTTGGT
66 ATAGGGGTATTTCGATCATTTTACCCTATGAGGGTATTTCGAT
* *
51428879 CATTTTA-CCTTACGAGGGTATTTCGGTCATTTTACCCTATGGGGGTTATTTTGATCATTTTACC
1 CATTTTATCC-TACGAGGGTATTTCAGTCATTTTACCCTATAGGGG-TATTTTGATCATTTTACC
* * *
51428943 TTATAGGTGTATTTCGATTATTTTACCCTATGAGGGTATTTCGAT
64 CTATAGGGGTATTTCGATCATTTTACCCTATGAGGGTATTTCGAT
* * *
51428988 TATTTTATCCTATGAGGGTATTTTAGTCATTTTACCCTAT
1 CATTTTATCCTACGAGGGTATTTCAGTCATTTTACCCTAT
51429028 TTTGGAGTCT
Statistics
Matches: 129, Mismatches: 17, Indels: 5
0.85 0.11 0.03
Matches are distributed among these distances:
107 2 0.02
108 38 0.29
109 87 0.67
110 2 0.02
ACGTcount: A:0.19, C:0.16, G:0.20, T:0.45
Consensus pattern (108 bp):
CATTTTATCCTACGAGGGTATTTCAGTCATTTTACCCTATAGGGGTATTTTGATCATTTTACCCT
ATAGGGGTATTTCGATCATTTTACCCTATGAGGGTATTTCGAT
Found at i:51432808 original size:26 final size:26
Alignment explanation
Indices: 51432779--51432828 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
51432769 GAATATCAGA
51432779 CCTTGAGCCGGTG-TTGATTTAGCATG
1 CCTTGAGCCGGTGCTT-ATTTAGCATG
*
51432805 CCTTGAGCCTGTGCTTATTTAGCA
1 CCTTGAGCCGGTGCTTATTTAGCA
51432829 AGCTTTGAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.16, C:0.22, G:0.26, T:0.36
Consensus pattern (26 bp):
CCTTGAGCCGGTGCTTATTTAGCATG
Found at i:51432836 original size:26 final size:26
Alignment explanation
Indices: 51432779--51432862 Score: 73
Period size: 26 Copynumber: 3.3 Consensus size: 26
51432769 GAATATCAGA
*
51432779 CCTTGAGCCGGTGTTGATTTAGCATG
1 CCTTGAGCCGGTGTTGATTTAGCAAG
*
51432805 CCTTGAGCCTGTGCTT-ATTTAGCAAG
1 CCTTGAGCCGGTG-TTGATTTAGCAAG
* * * * *
51432831 CTTTGAACCGATGATG-TTTAGCAGG
1 CCTTGAGCCGGTGTTGATTTAGCAAG
*
51432856 CTTTGAG
1 CCTTGAG
51432863 TCGACGAATA
Statistics
Matches: 47, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
25 15 0.32
26 30 0.64
27 2 0.04
ACGTcount: A:0.19, C:0.19, G:0.27, T:0.35
Consensus pattern (26 bp):
CCTTGAGCCGGTGTTGATTTAGCAAG
Found at i:51445211 original size:23 final size:24
Alignment explanation
Indices: 51445155--51445211 Score: 64
Period size: 23 Copynumber: 2.4 Consensus size: 24
51445145 CTTGTTATTT
* *
51445155 ATTTAATTGTTTTTAGGTATTTAGG
1 ATTTAATT-TCTTTAGGTAATTAGG
51445180 AATTT-ATTTCTTTA-GTAATTAGG
1 -ATTTAATTTCTTTAGGTAATTAGG
51445203 ATTTAATTT
1 ATTTAATTT
51445212 TTACAAAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
22 4 0.14
23 12 0.43
24 5 0.18
25 3 0.11
26 4 0.14
ACGTcount: A:0.28, C:0.02, G:0.14, T:0.56
Consensus pattern (24 bp):
ATTTAATTTCTTTAGGTAATTAGG
Found at i:51453116 original size:25 final size:25
Alignment explanation
Indices: 51453082--51453133 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
51453072 TATTTCAGCC
51453082 TAAGTTCAGAGAAGAATTCGTTATT
1 TAAGTTCAGAGAAGAATTCGTTATT
*
51453107 TAAGTTCAGAGAAGATTTCGTTATT
1 TAAGTTCAGAGAAGAATTCGTTATT
51453132 TA
1 TA
51453134 CTGTAATGCT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.35, C:0.08, G:0.19, T:0.38
Consensus pattern (25 bp):
TAAGTTCAGAGAAGAATTCGTTATT
Found at i:51466507 original size:50 final size:50
Alignment explanation
Indices: 51466401--51466634 Score: 290
Period size: 50 Copynumber: 4.7 Consensus size: 50
51466391 ATGCCAAAGA
* ** * * ***
51466401 CATGTCCCGGACATGGTCTTACATGGGATGTTCTCATAC-CAGTGCCCATGG
1 CATGTCCCAGACATGGTCTTACATGGGA-CCTCTCAT-CTCGGTGCCAACAC
*** *
51466452 CATGTCCCAGACATGGTCTTATGGGGGACCTCTCATCTCGGTGCCAACGC
1 CATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACAC
* * *
51466502 CATGTCCCAAACATGGTCTTACATGGGACCTCTCATGTCGGTGCCAACTC
1 CATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACAC
* *
51466552 CATGTCTCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACAA
1 CATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACAC
51466602 CATGTCCCAGACATGGTCTTACATGGGACCTCT
1 CATGTCCCAGACATGGTCTTACATGGGACCTCT
51466635 TTACCCAAAT
Statistics
Matches: 160, Mismatches: 22, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
49 1 0.01
50 135 0.84
51 24 0.15
ACGTcount: A:0.21, C:0.30, G:0.23, T:0.26
Consensus pattern (50 bp):
CATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACAC
Found at i:51468080 original size:26 final size:26
Alignment explanation
Indices: 51468050--51468235 Score: 117
Period size: 26 Copynumber: 7.2 Consensus size: 26
51468040 ACATGAATAT
*
51468050 CAGGCCATGAGCCGATGTTTATTTAG
1 CAGGCCTTGAGCCGATGTTTATTTAG
* *
51468076 CAGGCCTTGAGTC-AGTGTTTGTTTAG
1 CAGGCCTTGAGCCGA-TGTTTATTTAG
* * * *
51468102 CAGGCTTTGA-CCAGTTGATTACTTAG
1 CAGGCCTTGAGCC-GATGTTTATTTAG
* * * * *
51468128 TAGGCTTTGAGCTGGTTTTTATTTAG
1 CAGGCCTTGAGCCGATGTTTATTTAG
* *
51468154 CAGGCTTTGAGCC-AGTGATTATTTAG
1 CAGGCCTTGAGCCGA-TGTTTATTTAG
* * **
51468180 CAGGCCCTGAGCTGGCGTTTATTTAG
1 CAGGCCTTGAGCCGATGTTTATTTAG
* * * **
51468206 CAGGCTTTGAGTCGGTGAATATTTAG
1 CAGGCCTTGAGCCGATGTTTATTTAG
51468232 CAGG
1 CAGG
51468236 TACTATGTAC
Statistics
Matches: 121, Mismatches: 33, Indels: 12
0.73 0.20 0.07
Matches are distributed among these distances:
25 2 0.02
26 118 0.98
27 1 0.01
ACGTcount: A:0.20, C:0.16, G:0.28, T:0.35
Consensus pattern (26 bp):
CAGGCCTTGAGCCGATGTTTATTTAG
Found at i:51468154 original size:52 final size:52
Alignment explanation
Indices: 51468092--51468235 Score: 173
Period size: 52 Copynumber: 2.8 Consensus size: 52
51468082 TTGAGTCAGT
* * ** *
51468092 GTTTGTTTAGCAGGCTTTGA-CCAGTTGATTACTTAGTAGGCTTTGAGCTGGT
1 GTTTATTTAGCAGGCTTTGAGCCAG-TGATTACTTAGCAGGCCCTGAGCTGGC
* *
51468144 TTTTATTTAGCAGGCTTTGAGCCAGTGATTATTTAGCAGGCCCTGAGCTGGC
1 GTTTATTTAGCAGGCTTTGAGCCAGTGATTACTTAGCAGGCCCTGAGCTGGC
* * * *
51468196 GTTTATTTAGCAGGCTTTGAGTCGGTGAATATTTAGCAGG
1 GTTTATTTAGCAGGCTTTGAGCCAGTGATTACTTAGCAGG
51468236 TACTATGTAC
Statistics
Matches: 80, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
52 76 0.95
53 4 0.05
ACGTcount: A:0.19, C:0.15, G:0.28, T:0.38
Consensus pattern (52 bp):
GTTTATTTAGCAGGCTTTGAGCCAGTGATTACTTAGCAGGCCCTGAGCTGGC
Found at i:51468211 original size:78 final size:78
Alignment explanation
Indices: 51468067--51468216 Score: 183
Period size: 78 Copynumber: 1.9 Consensus size: 78
51468057 TGAGCCGATG
* * * ** ** *
51468067 TTTATTTAGCAGGCCTTGAGTCAGTGTTTGTTTAGCAGGCTTTGACCAGTTGATTACTTAGTAGG
1 TTTATTTAGCAGGCCTTGAGCCAGTGATTATTTAGCAGGCCCTGACCAGGCGATTACTTAGCAGG
51468132 CTTTGAGCTGGTT
66 CTTTGAGCTGGTT
* * * * *
51468145 TTTATTTAGCAGGCTTTGAGCCAGTGATTATTTAGCAGGCCCTGAGCTGGCGTTTATTTAGCAGG
1 TTTATTTAGCAGGCCTTGAGCCAGTGATTATTTAGCAGGCCCTGACCAGGCGATTACTTAGCAGG
51468210 CTTTGAG
66 CTTTGAG
51468217 TCGGTGAATA
Statistics
Matches: 59, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
78 59 1.00
ACGTcount: A:0.19, C:0.15, G:0.27, T:0.39
Consensus pattern (78 bp):
TTTATTTAGCAGGCCTTGAGCCAGTGATTATTTAGCAGGCCCTGACCAGGCGATTACTTAGCAGG
CTTTGAGCTGGTT
Found at i:51474051 original size:26 final size:26
Alignment explanation
Indices: 51473989--51474055 Score: 75
Period size: 26 Copynumber: 2.6 Consensus size: 26
51473979 ATTATGTGAT
*
51473989 AAATGGTTTTATGAAATGACTATACG
1 AAATGGTTATATGAAATGACTATACG
* *
51474015 AAATGTTTATATAGAAATAGA-TATATG
1 AAATGGTTATAT-GAAAT-GACTATACG
51474042 -AATGGTTATATGAA
1 AAATGGTTATATGAA
51474056 GTATTTGTTG
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
25 3 0.09
26 20 0.57
27 10 0.29
28 2 0.06
ACGTcount: A:0.43, C:0.03, G:0.18, T:0.36
Consensus pattern (26 bp):
AAATGGTTATATGAAATGACTATACG
Found at i:51476654 original size:102 final size:100
Alignment explanation
Indices: 51476478--51476813 Score: 435
Period size: 102 Copynumber: 3.3 Consensus size: 100
51476468 GATGAACACA
* * *
51476478 TGTGTAGTAC-AGTGTGAAGGCTACAACGTGTATCGATAAATAATGGTCACATGTGTAGTACTAA
1 TGTGTAGTACTA-TGTGAAGGCTACTACGTGTACCGATAAAT-ATGATCACATGTGTAGTACTAA
* *
51476542 GTGATGGCTACTATGTGTACCGAGAAGTTTTGGTCACG
64 GTGAAGGCTACTATGTGTACCGA-AAGATTTGGTCACG
* *
51476580 TGTGTAGTACTGTGTGAAGGCTACTACGTGTACCGATAAATGATGAACACATGTGTAGTACTAAG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAAT-ATGATCACATGTGTAGTACTAAG
*
51476645 TGAAGGCTACTATGTGTACCGAAAAGCTTTGGTCACG
65 TGAAGGCTACTATGTGTACCG-AAAGATTTGGTCACG
* * * *
51476682 TGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAAATTTGATCACGTGTGTAGTACTATG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTACCGAT-AAATATGATCACATGTGTAGTACTAAG
* * * *
51476746 TGAAGGCTACTACGTGAACCGTAAA-ACTTGATCACG
65 TGAAGGCTACTATGTGTACCG-AAAGATTTGGTCACG
*
51476782 TGTGTAGTACTATGTGAATGCTACTACGTGTA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTA
51476814 TCGAATGATA
Statistics
Matches: 209, Mismatches: 22, Indels: 8
0.87 0.09 0.03
Matches are distributed among these distances:
100 38 0.18
101 42 0.20
102 128 0.61
103 1 0.00
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (100 bp):
TGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAATATGATCACATGTGTAGTACTAAGT
GAAGGCTACTATGTGTACCGAAAGATTTGGTCACG
Found at i:51476744 original size:50 final size:50
Alignment explanation
Indices: 51476478--51476813 Score: 374
Period size: 51 Copynumber: 6.6 Consensus size: 50
51476468 GATGAACACA
* * * * *
51476478 TGTGTAGTAC-AGTGTGAAGGCTACAACGTGTATCGATAAATAATGGTCACA
1 TGTGTAGTACTA-TGTGAAGGCTACTACGTGTACCGATAAAT-TTGATCACG
* * * * * *
51476529 TGTGTAGTACTAAGTGATGGCTACTATGTGTACCGAGAAGTTTTGGTCACG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAA-ATTTGATCACG
* * * *
51476580 TGTGTAGTACTGTGTGAAGGCTACTACGTGTACCGATAAATGATGAACACA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAAT-TTGATCACG
* * *
51476631 TGTGTAGTACTAAGTGAAGGCTACTATGTGTACCGA-AAAGCTTTGGTCACG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAA--TTTGATCACG
*
51476682 TGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAAATTTGATCACG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTACCGAT-AAATTTGATCACG
* *
51476732 TGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAAACTTGATCACG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTACCGAT-AAATTTGATCACG
*
51476782 TGTGTAGTACTATGTGAATGCTACTACGTGTA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTA
51476814 TCGAATGATA
Statistics
Matches: 245, Mismatches: 33, Indels: 15
0.84 0.11 0.05
Matches are distributed among these distances:
50 92 0.38
51 147 0.60
52 6 0.02
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAATTTGATCACG
Found at i:51480947 original size:41 final size:40
Alignment explanation
Indices: 51480892--51481033 Score: 169
Period size: 41 Copynumber: 3.5 Consensus size: 40
51480882 TGTAAATAGC
*
51480892 GGCACGTATGTGCAATTCAGGGGTACTAAAGTACAAACAG
1 GGCACGTATGTGCAATTCAGGGGTACTGAAGTACAAACAG
* * *
51480932 GGACATGTATATGCAATTTAGGGGTA-TCGAAGTACAAACAAG
1 GG-CACGTATGTGCAATTCAGGGGTACT-GAAGTACAAAC-AG
* * * *
51480974 GGCACGTATGTGCAATTTAGGGGTACCGGAGTACAAATAGG
1 GGCACGTATGTGCAATTCAGGGGTACTGAAGTACAAACA-G
51481015 GGCACGTATGTGCAATTCA
1 GGCACGTATGTGCAATTCA
51481034 TAGAATAATT
Statistics
Matches: 87, Mismatches: 10, Indels: 9
0.82 0.09 0.08
Matches are distributed among these distances:
40 4 0.05
41 79 0.91
42 4 0.05
ACGTcount: A:0.33, C:0.15, G:0.29, T:0.23
Consensus pattern (40 bp):
GGCACGTATGTGCAATTCAGGGGTACTGAAGTACAAACAG
Found at i:51484289 original size:19 final size:19
Alignment explanation
Indices: 51484265--51484337 Score: 137
Period size: 19 Copynumber: 3.8 Consensus size: 19
51484255 AATCAAATCT
51484265 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
51484284 TCTAAGATTACATATCATA
1 TCTAAGATTGCATATCATA
51484303 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
51484322 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
51484338 CTTGAAGATT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 52 1.00
ACGTcount: A:0.37, C:0.16, G:0.10, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:51489807 original size:25 final size:25
Alignment explanation
Indices: 51489769--51489826 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
51489759 GTAAACTCAA
* **
51489769 AAATTCTCTAGAAAGCCTTTGTGGC
1 AAATTCTCTAGAAACCCTTTAAGGC
* *
51489794 AAATTCTTTGGAAACCCTTTAAGGC
1 AAATTCTCTAGAAACCCTTTAAGGC
51489819 AAATTCTC
1 AAATTCTC
51489827 GAATTATTTG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.33
Consensus pattern (25 bp):
AAATTCTCTAGAAACCCTTTAAGGC
Found at i:51494678 original size:27 final size:27
Alignment explanation
Indices: 51494648--51494714 Score: 80
Period size: 27 Copynumber: 2.5 Consensus size: 27
51494638 GTGAGAATGA
51494648 CACTTCGGTGCAAATCAGCGATAGTGG
1 CACTTCGGTGCAAATCAGCGATAGTGG
* * * *
51494675 CACTTTGGTGCAACTTAGTGATAGTGG
1 CACTTCGGTGCAAATCAGCGATAGTGG
* *
51494702 CACCTCGATGCAA
1 CACTTCGGTGCAA
51494715 TTCAATGATA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (27 bp):
CACTTCGGTGCAAATCAGCGATAGTGG
Found at i:51494723 original size:27 final size:27
Alignment explanation
Indices: 51494667--51494729 Score: 65
Period size: 27 Copynumber: 2.3 Consensus size: 27
51494657 GCAAATCAGC
* * * *
51494667 GATAGTGGCACTTTGGTGCAACTTAGT
1 GATAGTGGCACCTCGATGCAACTTAAT
51494694 GATAGTGGCACCTCGATGCAA-TTCAAT
1 GATAGTGGCACCTCGATGCAACTT-AAT
*
51494721 GATAATGGC
1 GATAGTGGC
51494730 TTTTCAAAGT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
26 2 0.07
27 28 0.93
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (27 bp):
GATAGTGGCACCTCGATGCAACTTAAT
Found at i:51502086 original size:15 final size:17
Alignment explanation
Indices: 51502055--51502086 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
51502045 AATATACACA
51502055 AAAATTATCATAGTTTT
1 AAAATTATCATAGTTTT
51502072 AAAA-TATCA-AGTTTT
1 AAAATTATCATAGTTTT
51502087 GTTGCCTGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 5 0.33
17 4 0.27
ACGTcount: A:0.44, C:0.06, G:0.06, T:0.44
Consensus pattern (17 bp):
AAAATTATCATAGTTTT
Found at i:51503963 original size:15 final size:15
Alignment explanation
Indices: 51503939--51503969 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
51503929 GTTGTTGCAG
51503939 TTTTTATGGATTAGT
1 TTTTTATGGATTAGT
*
51503954 TTTTTCTGGATTAGT
1 TTTTTATGGATTAGT
51503969 T
1 T
51503970 GGCAGCTCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.16, C:0.03, G:0.19, T:0.61
Consensus pattern (15 bp):
TTTTTATGGATTAGT
Found at i:51506773 original size:27 final size:27
Alignment explanation
Indices: 51506743--51506816 Score: 94
Period size: 27 Copynumber: 2.7 Consensus size: 27
51506733 GTCCATTTAA
* *
51506743 AGTTCGCCTCAAAGGTTATTCTTTCAG
1 AGTTCACCACAAAGGTTATTCTTTCAG
* * *
51506770 AGTTCACCACAATGGCTATTCTTTTAG
1 AGTTCACCACAAAGGTTATTCTTTCAG
*
51506797 AGTTCCCCACAAAGGTTATT
1 AGTTCACCACAAAGGTTATT
51506817 GATCTATCGT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.35
Consensus pattern (27 bp):
AGTTCACCACAAAGGTTATTCTTTCAG
Found at i:51510675 original size:16 final size:15
Alignment explanation
Indices: 51510629--51510676 Score: 53
Period size: 14 Copynumber: 3.2 Consensus size: 15
51510619 ATAATTAAAG
* *
51510629 AAAAATTTTATATAA
1 AAAAATATTATATAT
*
51510644 AAAAATAGTATA-AT
1 AAAAATATTATATAT
51510658 AAAAATATTATCATAT
1 AAAAATATTAT-ATAT
51510674 AAA
1 AAA
51510677 TCTATAAAAC
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
14 11 0.41
15 11 0.41
16 5 0.19
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.33
Consensus pattern (15 bp):
AAAAATATTATATAT
Found at i:51512392 original size:45 final size:45
Alignment explanation
Indices: 51512343--51512431 Score: 133
Period size: 45 Copynumber: 2.0 Consensus size: 45
51512333 ACGCCAAGGA
* * *
51512343 AATAAGATTTGCTATCTTCAGTCTACTCCACCGCAACTTCAGGGG
1 AATAAGACTTGCTATCTTCAATCCACTCCACCGCAACTTCAGGGG
* *
51512388 AATAAGACTTGTTATCTTCAATCCACTCCACTGCAACTTCAGGG
1 AATAAGACTTGCTATCTTCAATCCACTCCACCGCAACTTCAGGG
51512432 AGATAGGATT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (45 bp):
AATAAGACTTGCTATCTTCAATCCACTCCACCGCAACTTCAGGGG
Found at i:51512470 original size:44 final size:44
Alignment explanation
Indices: 51512368--51512827 Score: 242
Period size: 44 Copynumber: 10.6 Consensus size: 44
51512358 CTTCAGTCTA
* * ** * **
51512368 CTCCACCGCAACTTCAGGG-GAATAAGACTTGTTATCTTCAATCCA
1 CTCCACTGCAACTTCAGGGAG-ATAAGA-TTATTGGCTTTAATCTG
*
51512413 CTCCACTGCAACTTCAGGGAGATAGGATTATTGGCTTTAATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTATTGGCTTTAATCTG
* * ** *
51512457 CTCCACTGTAACTTCAAGGAGATAAGA--CCT-GC---CATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTATTGGCTTTAATCTG
* * *
51512495 C-CCTACT-CTAACTTCAAGGG-GATAGGATTATTGGCTTTAATATT
1 CTCC-ACTGC-AACTTC-AGGGAGATAAGATTATTGGCTTTAATCTG
** * * *
51512539 CTCCACTAAAACTTCAGGGAGATAAGA-T-TCGCCATCTTCAGTCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTATTGGC-T-TT-AATCTG
* * ** * **
51512584 CCCCACTGCAACTTCAGTGGA-ATAAGACTTGTTATCTTCAATCCA
1 CTCCACTGCAACTTCAG-GGAGATAAGA-TTATTGGCTTTAATCTG
* * * * *
51512629 CTCTACTGCAACTTCAGAGAGATAGGAGTATTGGCTTTAAGCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTATTGGCTTTAATCTG
* *
51512673 CTCCACTGCAACTTCAGGGAGATAAGA-T-CT-GC---CATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTATTGGCTTTAATCTG
* * * * *
51512711 CCCCACTACAACTTCAGGGGGATAGGATTATTGGCTTTAATCTA
1 CTCCACTGCAACTTCAGGGAGATAAGATTATTGGCTTTAATCTG
* * * *
51512755 CTCCACTGCAACTTCAGGGAGTTAAGA-T-TCGCCATCTTCAGTCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTATTGGC-T-TT-AATCTG
* *
51512800 CCCCACTGCAACTTCAGGGGGATAAGAT
1 CTCCACTGCAACTTCAGGGAGATAAGAT
51512828 CTGTAGTTTC
Statistics
Matches: 308, Mismatches: 76, Indels: 61
0.69 0.17 0.14
Matches are distributed among these distances:
37 2 0.01
38 48 0.16
39 4 0.01
40 2 0.01
41 8 0.03
42 8 0.03
43 9 0.03
44 119 0.39
45 99 0.32
46 5 0.02
47 2 0.01
48 2 0.01
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (44 bp):
CTCCACTGCAACTTCAGGGAGATAAGATTATTGGCTTTAATCTG
Found at i:51512597 original size:45 final size:43
Alignment explanation
Indices: 51512548--51512827 Score: 177
Period size: 45 Copynumber: 6.4 Consensus size: 43
51512538 TCTCCACTAA
51512548 AACTTCAGGGAGATAAGATTCGCCATCTTCAGTCTGCCCCACTGC
1 AACTTCAGGGAGATAAGATT-GCC-TCTTCAGTCTGCCCCACTGC
** * ** * *
51512593 AACTTCAGTGGA-ATAAGACTTGTTATCTTCAATCCACTCTACTGC
1 AACTTCAG-GGAGATAAGA-TTG-CCTCTTCAGTCTGCCCCACTGC
* * * *
51512638 AACTTCAGAGAGATAGGAGTATTGGCT-TTAAG-CTGCTCCACTGC
1 AACTTCAGGGAGATA--AG-ATTGCCTCTTCAGTCTGCCCCACTGC
*
51512682 AACTTCAGGGAGATAAGA-T--CTGC--CA-TCTGCCCCACTAC
1 AACTTCAGGGAGATAAGATTGCCT-CTTCAGTCTGCCCCACTGC
* * * * * *
51512720 AACTTCAGGGGGATAGGATTATTGGCT-TT-AATCTACTCCACTGC
1 AACTTCAGGGAGATA--A-GATTGCCTCTTCAGTCTGCCCCACTGC
*
51512764 AACTTCAGGGAGTTAAGATTCGCCATCTTCAGTCTGCCCCACTGC
1 AACTTCAGGGAGATAAGATT-GCC-TCTTCAGTCTGCCCCACTGC
*
51512809 AACTTCAGGGGGATAAGAT
1 AACTTCAGGGAGATAAGAT
51512828 CTGTAGTTTC
Statistics
Matches: 179, Mismatches: 33, Indels: 46
0.69 0.13 0.18
Matches are distributed among these distances:
38 27 0.15
40 2 0.01
41 5 0.03
42 6 0.03
43 2 0.01
44 52 0.29
45 73 0.41
46 6 0.03
47 5 0.03
48 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (43 bp):
AACTTCAGGGAGATAAGATTGCCTCTTCAGTCTGCCCCACTGC
Found at i:51512726 original size:216 final size:216
Alignment explanation
Indices: 51512344--51512826 Score: 761
Period size: 216 Copynumber: 2.2 Consensus size: 216
51512334 CGCCAAGGAA
* * * * *
51512344 ATAAGATTTGCTATCTTCAGTCTACTCCACCGCAACTTCAGGGGAATAAGACTTGTTATCTTCAA
1 ATAAGATTCGCCATCTTCAGTCTGCCCCACTGCAACTTCAGGGGAATAAGACTTGTTATCTTCAA
* * * *
51512409 TCCACTCCACTGCAACTTCAGGGAGATAGGATTATTGGCTTTAATCTGCTCCACTGTAACTTCAA
66 TCCACTCCACTGCAACTTCAGAGAGATAGGAGTATTGGCTTTAAGCTGCTCCACTGCAACTTCAA
* *
51512474 GGAGATAAGACCTGCCATCTGCCCTACTCTAACTTCAAGGGGATAGGATTATTGGCTTTAATATT
131 GGAGATAAGACCTGCCATCTGCCCCACTCTAACTTCAAGGGGATAGGATTATTGGCTTTAATATA
51512539 CTCCACTAAAACTTCAGGGAG
196 CTCCACTAAAACTTCAGGGAG
*
51512560 ATAAGATTCGCCATCTTCAGTCTGCCCCACTGCAACTTCAGTGGAATAAGACTTGTTATCTTCAA
1 ATAAGATTCGCCATCTTCAGTCTGCCCCACTGCAACTTCAGGGGAATAAGACTTGTTATCTTCAA
* *
51512625 TCCACTCTACTGCAACTTCAGAGAGATAGGAGTATTGGCTTTAAGCTGCTCCACTGCAACTTCAG
66 TCCACTCCACTGCAACTTCAGAGAGATAGGAGTATTGGCTTTAAGCTGCTCCACTGCAACTTCAA
* * *
51512690 GGAGATAAGATCTGCCATCTGCCCCACTAC-AACTTCAGGGGGATAGGATTATTGGCTTTAATCT
131 GGAGATAAGACCTGCCATCTGCCCCACT-CTAACTTCAAGGGGATAGGATTATTGGCTTTAATAT
**
51512754 ACTCCACTGCAACTTCAGGGAG
195 ACTCCACTAAAACTTCAGGGAG
* *
51512776 TTAAGATTCGCCATCTTCAGTCTGCCCCACTGCAACTTCAGGGGGATAAGA
1 ATAAGATTCGCCATCTTCAGTCTGCCCCACTGCAACTTCAGGGGAATAAGA
51512827 TCTGTAGTTT
Statistics
Matches: 244, Mismatches: 22, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
216 243 1.00
217 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (216 bp):
ATAAGATTCGCCATCTTCAGTCTGCCCCACTGCAACTTCAGGGGAATAAGACTTGTTATCTTCAA
TCCACTCCACTGCAACTTCAGAGAGATAGGAGTATTGGCTTTAAGCTGCTCCACTGCAACTTCAA
GGAGATAAGACCTGCCATCTGCCCCACTCTAACTTCAAGGGGATAGGATTATTGGCTTTAATATA
CTCCACTAAAACTTCAGGGAG
Found at i:51512774 original size:82 final size:82
Alignment explanation
Indices: 51512637--51512791 Score: 240
Period size: 82 Copynumber: 1.9 Consensus size: 82
51512627 CACTCTACTG
*
51512637 CAACTTCAGAGAGATAGGAGTATTGGCTTTAAGCTGCTCCACTGCAACTTCAGGGAGATAAGA-T
1 CAACTTCAGAGAGATAGGAGTATTGGCTTTAAGCTACTCCACTGCAACTTCAGGGAGATAAGATT
51512701 CTGCCATCTGCCCCACTA
66 C-GCCATCTGCCCCACTA
* * * * *
51512719 CAACTTCAGGGGGATAGGATTATTGGCTTTAATCTACTCCACTGCAACTTCAGGGAGTTAAGATT
1 CAACTTCAGAGAGATAGGAGTATTGGCTTTAAGCTACTCCACTGCAACTTCAGGGAGATAAGATT
51512784 CGCCATCT
66 CGCCATCT
51512792 TCAGTCTGCC
Statistics
Matches: 66, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
82 64 0.97
83 2 0.03
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (82 bp):
CAACTTCAGAGAGATAGGAGTATTGGCTTTAAGCTACTCCACTGCAACTTCAGGGAGATAAGATT
CGCCATCTGCCCCACTA
Found at i:51525332 original size:16 final size:18
Alignment explanation
Indices: 51525301--51525343 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
51525291 CAAGATAAAA
*
51525301 ATAATTAAACATAAATTGT
1 ATAA-TAAACATAAATAGT
51525320 AT-ATAAACA-AAATAGT
1 ATAATAAACATAAATAGT
51525336 ATAATAAA
1 ATAATAAA
51525344 AATATTATCA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 8 0.36
17 11 0.50
18 1 0.05
19 2 0.09
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.30
Consensus pattern (18 bp):
ATAATAAACATAAATAGT
Found at i:51526920 original size:18 final size:18
Alignment explanation
Indices: 51526897--51526949 Score: 70
Period size: 18 Copynumber: 2.9 Consensus size: 18
51526887 ATGTTATACT
51526897 ATGTTATTATGCGAACCC
1 ATGTTATTATGCGAACCC
*
51526915 ATGTTATTATGTGAACCC
1 ATGTTATTATGCGAACCC
* * *
51526933 CTGTTGTTGTGCGAACC
1 ATGTTATTATGCGAACC
51526950 TTAATATTAA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.36
Consensus pattern (18 bp):
ATGTTATTATGCGAACCC
Found at i:51535981 original size:5 final size:5
Alignment explanation
Indices: 51535971--51535999 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
51535961 TTTATGAGCT
51535971 ACCAA ACCAA ACCAA ACCAA ACCAA ACCA
1 ACCAA ACCAA ACCAA ACCAA ACCAA ACCA
51536000 TCTCTTCTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.59, C:0.41, G:0.00, T:0.00
Consensus pattern (5 bp):
ACCAA
Found at i:51539062 original size:7 final size:7
Alignment explanation
Indices: 51539052--51539135 Score: 73
Period size: 7 Copynumber: 12.0 Consensus size: 7
51539042 AGAGTTTTGA
51539052 GTTTAGG
1 GTTTAGG
*
51539059 GTTTATG
1 GTTTAGG
* *
51539066 ATGTA-G
1 GTTTAGG
*
51539072 GTTTAGT
1 GTTTAGG
*
51539079 GTTTTGG
1 GTTTAGG
51539086 GTTTAGG
1 GTTTAGG
51539093 GTTTAGG
1 GTTTAGG
51539100 AGTTT-GAG
1 -GTTTAG-G
*
51539108 GTTTAAG
1 GTTTAGG
*
51539115 GTTTGGG
1 GTTTAGG
51539122 GTTTAGG
1 GTTTAGG
51539129 GTTTAGG
1 GTTTAGG
51539136 CCGCTTTAGT
Statistics
Matches: 60, Mismatches: 13, Indels: 8
0.74 0.16 0.10
Matches are distributed among these distances:
6 4 0.07
7 51 0.85
8 5 0.08
ACGTcount: A:0.15, C:0.00, G:0.39, T:0.45
Consensus pattern (7 bp):
GTTTAGG
Found at i:51539075 original size:27 final size:27
Alignment explanation
Indices: 51539037--51539090 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
51539027 TATTATTTTG
*
51539037 TGATTAGAGTTTTGAGTTTAGGGTTTA
1 TGATTAGAGTTTAGAGTTTAGGGTTTA
* *
51539064 TGATGTAG-GTTTAGTGTTTTGGGTTTA
1 TGAT-TAGAGTTTAGAGTTTAGGGTTTA
51539091 GGGTTTAGGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
27 20 0.87
28 3 0.13
ACGTcount: A:0.19, C:0.00, G:0.31, T:0.50
Consensus pattern (27 bp):
TGATTAGAGTTTAGAGTTTAGGGTTTA
Found at i:51539124 original size:36 final size:34
Alignment explanation
Indices: 51539052--51539135 Score: 107
Period size: 36 Copynumber: 2.4 Consensus size: 34
51539042 AGAGTTTTGA
* *
51539052 GTTTAGGGTTTATGATGTAGGTTTAGTGTTTTGG
1 GTTTAGGGTTTAGGATGTAGGTTTAGTGTTTGGG
*
51539086 GTTTAGGGTTTAGGAGTTTGAGGTTTAAG-GTTTGGG
1 GTTTAGGGTTTAGGA-TGT-AGGTTT-AGTGTTTGGG
51539122 GTTTAGGGTTTAGG
1 GTTTAGGGTTTAGG
51539136 CCGCTTTAGT
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
34 14 0.32
35 2 0.05
36 26 0.59
37 2 0.05
ACGTcount: A:0.15, C:0.00, G:0.39, T:0.45
Consensus pattern (34 bp):
GTTTAGGGTTTAGGATGTAGGTTTAGTGTTTGGG
Found at i:51541632 original size:14 final size:14
Alignment explanation
Indices: 51541613--51541656 Score: 58
Period size: 14 Copynumber: 3.4 Consensus size: 14
51541603 AGCATATTTA
51541613 ATATTATTGATATT
1 ATATTATTGATATT
*
51541627 ATATTATT--T-TA
1 ATATTATTGATATT
51541638 ATATTATTGATATT
1 ATATTATTGATATT
51541652 ATATT
1 ATATT
51541657 TTTTATTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
11 9 0.36
12 1 0.04
13 1 0.04
14 14 0.56
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (14 bp):
ATATTATTGATATT
Found at i:51541666 original size:22 final size:25
Alignment explanation
Indices: 51541609--51541661 Score: 99
Period size: 25 Copynumber: 2.2 Consensus size: 25
51541599 TTTCAGCATA
51541609 TTTAATATTATTGATATTATATTAT
1 TTTAATATTATTGATATTATATTAT
51541634 TTTAATATTATTGATATTATATT-T
1 TTTAATATTATTGATATTATATTAT
51541658 TTTA
1 TTTA
51541662 TTTATGTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
24 5 0.18
25 23 0.82
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.62
Consensus pattern (25 bp):
TTTAATATTATTGATATTATATTAT
Found at i:51542489 original size:9 final size:9
Alignment explanation
Indices: 51542475--51542845 Score: 93
Period size: 9 Copynumber: 43.4 Consensus size: 9
51542465 ACTATCACAT
51542475 CTTACATAA
1 CTTACATAA
*
51542484 CTTACATAG
1 CTTACATAA
* *
51542493 CTT-GATTA
1 CTTACATAA
*
51542501 --TACTTAA
1 CTTACATAA
*
51542508 CTTACATTA
1 CTTACATAA
*
51542517 --TACACAA
1 CTTACATAA
51542524 CTTACATAA
1 CTTACATAA
*
51542533 CTTTCATTATACA
1 C-TT-A-CATA-A
*
51542546 CATACATAA
1 CTTACATAA
*
51542555 CTTAAATATA
1 CTTACATA-A
* *
51542565 -ATACACAA
1 CTTACATAA
*
51542573 CATACATAA
1 CTTACATAA
*
51542582 CTTGCATAA
1 CTTACATAA
* *
51542591 TTTTCAT-A
1 CTTACATAA
*
51542599 -GTACATAA
1 CTTACATAA
51542607 CTTACATAA
1 CTTACATAA
*
51542616 --TA-TTGAA
1 CTTACAT-AA
51542623 CTTACATAA
1 CTTACATAA
* *
51542632 TTTTCATAA
1 CTTACATAA
51542641 --TACATAA
1 CTTACATAA
* *
51542648 GTTACTTAA
1 CTTACATAA
* *
51542657 TTTTCATAA
1 CTTACATAA
* *
51542666 --TAAAAAA
1 CTTACATAA
51542673 CTTACATAA
1 CTTACATAA
51542682 CTTACATAA
1 CTTACATAA
*
51542691 -TT-TAT-A
1 CTTACATAA
* * *
51542697 CAGTACACAG
1 C-TTACATAA
51542707 CTTACATAA
1 CTTACATAA
* *
51542716 TTTTCATAA
1 CTTACATAA
51542725 --TACATAA
1 CTTACATAA
51542732 CTTACATAA
1 CTTACATAA
51542741 -TTGATCATAA
1 CTT-A-CATAA
51542751 --TACA-ACA
1 CTTACATA-A
51542758 CTTACATAA
1 CTTACATAA
*
51542767 -TT-CACAA
1 CTTACATAA
51542774 CTTACATAA
1 CTTACATAA
*
51542783 -TATTCATAA
1 CT-TACATAA
51542792 --TACATAA
1 CTTACATAA
51542799 CTTACATAA
1 CTTACATAA
* *
51542808 TTTTCATAA
1 CTTACATAA
*
51542817 --TAAATAA
1 CTTACATAA
51542824 CTTACATAA
1 CTTACATAA
*
51542833 CTTACATAG
1 CTTACATAA
51542842 CTTA
1 CTTA
51542846 ATTATACTTA
Statistics
Matches: 259, Mismatches: 63, Indels: 80
0.64 0.16 0.20
Matches are distributed among these distances:
6 4 0.02
7 51 0.20
8 16 0.06
9 166 0.64
10 14 0.05
11 2 0.01
12 4 0.02
13 2 0.01
ACGTcount: A:0.44, C:0.18, G:0.03, T:0.36
Consensus pattern (9 bp):
CTTACATAA
Found at i:51542540 original size:25 final size:25
Alignment explanation
Indices: 51542505--51542840 Score: 156
Period size: 25 Copynumber: 13.4 Consensus size: 25
51542495 TGATTATACT
*
51542505 TAACTTACATTATACACAACTTACA
1 TAACTTACATAATACACAACTTACA
* *
51542530 TAACTTTCATTATACAC-A--TACA
1 TAACTTACATAATACACAACTTACA
* *
51542552 TAACTTAAATATAATACACAACATACA
1 TAACTT--ACATAATACACAACTTACA
* *** *
51542579 TAACTTGCATAATTTTCATA-GTACA
1 TAACTTACATAATACACA-ACTTACA
***
51542604 TAACTTACATAATATTGAACTTACA
1 TAACTTACATAATACACAACTTACA
* * * * *
51542629 TAATTTTCATAATACATAAGTTACT
1 TAACTTACATAATACACAACTTACA
* * * *
51542654 TAATTTTCATAATAAAAAACTTACA
1 TAACTTACATAATACACAACTTACA
* *
51542679 TAACTTACATAATTTATAC-A-GTACA
1 TAACTTACATAA--TACACAACTTACA
* * * *
51542704 CAGCTTACATAATTTTCATAA--TACA
1 TAACTTACATAA--TACACAACTTACA
*
51542729 TAACTTACATAATTGATCATAA--TACA
1 TAACTTACATAA-T-A-CACAACTTACA
*
51542755 -ACACTTACATAATTCACAACTTACA
1 TA-ACTTACATAATACACAACTTACA
* *
51542780 TAA-TATTCATAATACATAACTTACA
1 TAACT-TACATAATACACAACTTACA
* * * *
51542805 TAATTTTCATAATAAATAACTTACA
1 TAACTTACATAATACACAACTTACA
51542830 TAACTTACATA
1 TAACTTACATA
51542841 GCTTAATTAT
Statistics
Matches: 247, Mismatches: 46, Indels: 36
0.75 0.14 0.11
Matches are distributed among these distances:
22 10 0.04
23 4 0.02
24 13 0.05
25 183 0.74
26 24 0.10
27 13 0.05
ACGTcount: A:0.45, C:0.18, G:0.02, T:0.35
Consensus pattern (25 bp):
TAACTTACATAATACACAACTTACA
Found at i:51542631 original size:41 final size:41
Alignment explanation
Indices: 51542580--51542657 Score: 120
Period size: 41 Copynumber: 1.9 Consensus size: 41
51542570 CAACATACAT
* *
51542580 AACTTGCATAATTTTCATAGTACATAACTTACATAATATTG
1 AACTTACATAATTTTCATAATACATAACTTACATAATATTG
* *
51542621 AACTTACATAATTTTCATAATACATAAGTTACTTAAT
1 AACTTACATAATTTTCATAATACATAACTTACATAAT
51542658 TTTCATAATA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 33 1.00
ACGTcount: A:0.41, C:0.14, G:0.05, T:0.40
Consensus pattern (41 bp):
AACTTACATAATTTTCATAATACATAACTTACATAATATTG
Found at i:51542684 original size:59 final size:59
Alignment explanation
Indices: 51542621--51542740 Score: 156
Period size: 59 Copynumber: 2.0 Consensus size: 59
51542611 CATAATATTG
*
51542621 AACTTACATAATTTTCATA-A-TACATAAG-TTACTTAATTTTCATAATAAAAAACTTACAT
1 AACTTACATAA-TTT-ATACAGTACA-AAGCTTACATAATTTTCATAATAAAAAACTTACAT
* * *
51542680 AACTTACATAATTTATACAGTACACAGCTTACATAATTTTCATAATACATAACTTACAT
1 AACTTACATAATTTATACAGTACAAAGCTTACATAATTTTCATAATAAAAAACTTACAT
51542739 AA
1 AA
51542741 TTGATCATAA
Statistics
Matches: 54, Mismatches: 4, Indels: 6
0.84 0.06 0.09
Matches are distributed among these distances:
57 3 0.06
58 6 0.11
59 45 0.83
ACGTcount: A:0.45, C:0.16, G:0.03, T:0.37
Consensus pattern (59 bp):
AACTTACATAATTTATACAGTACAAAGCTTACATAATTTTCATAATAAAAAACTTACAT
Found at i:51542730 original size:16 final size:16
Alignment explanation
Indices: 51542709--51542832 Score: 68
Period size: 16 Copynumber: 8.0 Consensus size: 16
51542699 GTACACAGCT
* *
51542709 TACATAATTTTCATAA
1 TACATAACTTACATAA
51542725 TACATAACTTACATAA
1 TACATAACTTACATAA
*
51542741 T---TGA--T-CATAA
1 TACATAACTTACATAA
51542751 TACA-ACACTTACATAA
1 TACATA-ACTTACATAA
* *
51542767 TTCACAACTTACATAA
1 TACATAACTTACATAA
51542783 TATTCATAA--TACATAA
1 TA--CATAACTTACATAA
* *
51542799 CTTACATAATTTTCATAA
1 --TACATAACTTACATAA
*
51542817 TAAATAACTTACATAA
1 TACATAACTTACATAA
51542833 CTTACATAGC
Statistics
Matches: 83, Mismatches: 11, Indels: 28
0.68 0.09 0.23
Matches are distributed among these distances:
10 6 0.07
11 1 0.01
13 3 0.04
15 1 0.01
16 59 0.71
17 1 0.01
18 12 0.14
ACGTcount: A:0.47, C:0.17, G:0.01, T:0.35
Consensus pattern (16 bp):
TACATAACTTACATAA
Found at i:51542780 original size:67 final size:66
Alignment explanation
Indices: 51542702--51542832 Score: 201
Period size: 67 Copynumber: 2.0 Consensus size: 66
51542692 TTATACAGTA
* * *
51542702 CACAGCTTACATAATTTTCATAATACATAACTTACATAATTGATCATAATACAA-CACTTACATA
1 CACAACTTACATAATATTCATAATACATAACTTACATAATT-ATCATAATA-AATAACTTACATA
51542766 ATT
64 ATT
*
51542769 CACAACTTACATAATATTCATAATACATAACTTACATAATTTTCATAATAAATAACTTACATAA
1 CACAACTTACATAATATTCATAATACATAACTTACATAATTATCATAATAAATAACTTACATAA
51542833 CTTACATAGC
Statistics
Matches: 59, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
65 2 0.03
66 18 0.31
67 39 0.66
ACGTcount: A:0.46, C:0.18, G:0.02, T:0.34
Consensus pattern (66 bp):
CACAACTTACATAATATTCATAATACATAACTTACATAATTATCATAATAAATAACTTACATAAT
T
Found at i:51548231 original size:21 final size:21
Alignment explanation
Indices: 51548207--51548253 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
51548197 AACTTAAAGA
*
51548207 AGAGGCGGCAGCGAGGGAAGC
1 AGAGGCGGCAGCGAGAGAAGC
*
51548228 AGAGGCTGCAGCGAGAGAAGC
1 AGAGGCGGCAGCGAGAGAAGC
51548249 AGAGG
1 AGAGG
51548254 TTCAAAAGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.32, C:0.17, G:0.49, T:0.02
Consensus pattern (21 bp):
AGAGGCGGCAGCGAGAGAAGC
Found at i:51548763 original size:44 final size:45
Alignment explanation
Indices: 51548664--51548765 Score: 116
Period size: 44 Copynumber: 2.3 Consensus size: 45
51548654 TCATGTTCTA
* * *
51548664 TAGCGGCGTTTGTGGAAAAAAATCGTCGCTAAAGAACATGACTTT
1 TAGCGACGTTTGTGGAAAAAAATCGCCACTAAAGAACATGACTTT
* * * * *
51548709 TGGCGGCGTTTGTGGAAAAAAAT-GCCACTAAAGAATATTATTTT
1 TAGCGACGTTTGTGGAAAAAAATCGCCACTAAAGAACATGACTTT
*
51548753 TAGCTACGTTTGT
1 TAGCGACGTTTGT
51548766 AGAGAAAGCG
Statistics
Matches: 48, Mismatches: 9, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
44 26 0.54
45 22 0.46
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (45 bp):
TAGCGACGTTTGTGGAAAAAAATCGCCACTAAAGAACATGACTTT
Found at i:51548840 original size:43 final size:44
Alignment explanation
Indices: 51548664--51548845 Score: 143
Period size: 43 Copynumber: 4.2 Consensus size: 44
51548654 TCATGTTCTA
* * *
51548664 TAGCGGCGTTTGTGGAAAAAAATCGTCGCTAAAGAACATGACTTT
1 TAGCGGCGTTTGTGG-AAAAAAGCGCCGCTAAAGAACATGACCTT
* ** * * * **
51548709 TGGCGGCGTTTGTGGAAAAAAATGCCACTAAAGAATATTATTTT
1 TAGCGGCGTTTGTGGAAAAAAGCGCCGCTAAAGAACATGACCTT
** * * ** **
51548753 TAGCTACGTTTGTAG-AGAAAGCGCCGCTAAAGGTCATGTTCTT
1 TAGCGGCGTTTGTGGAAAAAAGCGCCGCTAAAGAACATGACCTT
* * *
51548796 TAGCGGCGTTTGTTG-TAAAAGCGTCGCTAAAGAACATGACCTT
1 TAGCGGCGTTTGTGGAAAAAAGCGCCGCTAAAGAACATGACCTT
51548839 TAGCGGC
1 TAGCGGC
51548846 ATTTATTTCT
Statistics
Matches: 105, Mismatches: 32, Indels: 2
0.76 0.23 0.01
Matches are distributed among these distances:
43 58 0.55
44 33 0.31
45 14 0.13
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (44 bp):
TAGCGGCGTTTGTGGAAAAAAGCGCCGCTAAAGAACATGACCTT
Found at i:51551076 original size:15 final size:16
Alignment explanation
Indices: 51551058--51551090 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
51551048 AATTTTATAG
51551058 ATTTTA-ATAATTATT
1 ATTTTACATAATTATT
*
51551073 ATTTTACATATTTATT
1 ATTTTACATAATTATT
51551089 AT
1 AT
51551091 ACATATATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (16 bp):
ATTTTACATAATTATT
Found at i:51551236 original size:47 final size:47
Alignment explanation
Indices: 51551177--51551269 Score: 168
Period size: 47 Copynumber: 2.0 Consensus size: 47
51551167 ACATACAAAA
* *
51551177 ATTATTATTTACTTTTCCTGTTAATAAAATTTTAATATAAATATGCT
1 ATTATTAATTACTTTTCCTATTAATAAAATTTTAATATAAATATGCT
51551224 ATTATTAATTACTTTTCCTATTAATAAAATTTTAATATAAATATGC
1 ATTATTAATTACTTTTCCTATTAATAAAATTTTAATATAAATATGC
51551270 AAGACTAAAT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.39, C:0.09, G:0.03, T:0.49
Consensus pattern (47 bp):
ATTATTAATTACTTTTCCTATTAATAAAATTTTAATATAAATATGCT
Found at i:51555541 original size:9 final size:9
Alignment explanation
Indices: 51555529--51555577 Score: 62
Period size: 9 Copynumber: 5.4 Consensus size: 9
51555519 TCAATTCAGT
51555529 TAATTCGGG
1 TAATTCGGG
51555538 TAATTCGGG
1 TAATTCGGG
* *
51555547 TAATTCAGT
1 TAATTCGGG
*
51555556 TAATTCGAG
1 TAATTCGGG
*
51555565 TAATTCGGT
1 TAATTCGGG
51555574 TAAT
1 TAAT
51555578 GTTTAACCAA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
9 33 1.00
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.39
Consensus pattern (9 bp):
TAATTCGGG
Found at i:51555550 original size:18 final size:18
Alignment explanation
Indices: 51555529--51555577 Score: 71
Period size: 18 Copynumber: 2.7 Consensus size: 18
51555519 TCAATTCAGT
* *
51555529 TAATTCGGGTAATTCGGG
1 TAATTCGGTTAATTCGAG
*
51555547 TAATTCAGTTAATTCGAG
1 TAATTCGGTTAATTCGAG
51555565 TAATTCGGTTAAT
1 TAATTCGGTTAAT
51555578 GTTTAACCAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.39
Consensus pattern (18 bp):
TAATTCGGTTAATTCGAG
Found at i:51555559 original size:27 final size:27
Alignment explanation
Indices: 51555521--51555577 Score: 96
Period size: 27 Copynumber: 2.1 Consensus size: 27
51555511 GTAGTGATTC
*
51555521 AATTCAGTTAATTCGGGTAATTCGGGT
1 AATTCAGTTAATTCGAGTAATTCGGGT
*
51555548 AATTCAGTTAATTCGAGTAATTCGGTT
1 AATTCAGTTAATTCGAGTAATTCGGGT
51555575 AAT
1 AAT
51555578 GTTTAACCAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.39
Consensus pattern (27 bp):
AATTCAGTTAATTCGAGTAATTCGGGT
Found at i:51558370 original size:62 final size:59
Alignment explanation
Indices: 51558266--51558457 Score: 210
Period size: 62 Copynumber: 3.1 Consensus size: 59
51558256 ATCACTTTAA
* *
51558266 TATTAAATTAGTATAATACTTA-TAAAGATAAATATTAGATTAAATTTAATATTAAATCT
1 TATTAAATTAGTAAAATA-TTATTAAAGATAAATATTAAATTAAATTTAATATTAAATCT
* *
51558325 TATTAAATTAGTAGAATATTTATCTACAAGATAAACATTAAATTAAATTTAATATTATAATCACT
1 TATTAAATTAGTAAAATA-TTAT-TA-AAGATAAATATTAAATTAAATTTAATATTA-AAT--C-
51558390 TT
59 -T
* *
51558392 AATATTAAATTAATAAAATATTATT-AAGATAAATATTAAATTTAATTTAATATTAAATC-
1 --TATTAAATTAGTAAAATATTATTAAAGATAAATATTAAATTAAATTTAATATTAAATCT
51558451 TATTAAA
1 TATTAAA
51558458 ATAATATTAT
Statistics
Matches: 115, Mismatches: 8, Indels: 22
0.79 0.06 0.15
Matches are distributed among these distances:
57 7 0.06
59 20 0.17
61 2 0.02
62 29 0.25
63 3 0.03
64 3 0.03
65 29 0.25
67 2 0.02
68 4 0.03
69 16 0.14
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.42
Consensus pattern (59 bp):
TATTAAATTAGTAAAATATTATTAAAGATAAATATTAAATTAAATTTAATATTAAATCT
Done.