Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67659327
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 461372 characters in sequence are not A, C, G, or T
File 164 of 216
Found at i:51558439 original size:65 final size:67
Alignment explanation
Indices: 51558247--51558450 Score: 216
Period size: 65 Copynumber: 3.2 Consensus size: 67
51558237 TCAATTATGA
* * * * * *
51558247 TTAATGTT-AATCACTTTAATATTAAATTAGTATAATACTTA--TAAAGATAAATATTAGATTAA
1 TTAATATTAAATCACTTTAATATTAAATTAATAAAATATTTATCTAAAGATAAACATTAAATTAA
51558309 AT
66 AT
* *
51558311 TTAATATTAAAT--C--T--TATTAAATTAGTAGAATATTTATCTACAAGATAAACATTAAATTA
1 TTAATATTAAATCACTTTAATATTAAATTAATAAAATATTTATCTA-AAGATAAACATTAAATTA
51558370 AAT
65 AAT
* *
51558373 TTAATATTATAATCACTTTAATATTAAATTAATAAAATA-TTAT-T-AAGATAAATATTAAATTT
1 TTAATATTA-AATCACTTTAATATTAAATTAATAAAATATTTATCTAAAGATAAACATTAAATTA
51558435 AAT
65 AAT
51558438 TTAATATTAAATC
1 TTAATATTAAATC
51558451 TATTAAAATA
Statistics
Matches: 120, Mismatches: 9, Indels: 22
0.79 0.06 0.15
Matches are distributed among these distances:
59 20 0.17
61 3 0.03
62 28 0.23
63 4 0.03
64 11 0.09
65 32 0.27
67 2 0.02
68 4 0.03
69 16 0.13
ACGTcount: A:0.49, C:0.05, G:0.04, T:0.43
Consensus pattern (67 bp):
TTAATATTAAATCACTTTAATATTAAATTAATAAAATATTTATCTAAAGATAAACATTAAATTAA
AT
Found at i:51558460 original size:17 final size:17
Alignment explanation
Indices: 51558356--51558457 Score: 56
Period size: 17 Copynumber: 6.2 Consensus size: 17
51558346 ATCTACAAGA
*
51558356 TAAACATTAAAT-TAAAT
1 TAAATATTAAATCT-AAT
* *
51558373 TTAATATTATAATC-ACT
1 TAAATATTA-AATCTAAT
*
51558390 TTAATATTAAAT-TAAT
1 TAAATATTAAATCTAAT
* *
51558406 AAAATATT--AT-TAAGA
1 TAAATATTAAATCTAA-T
*
51558421 TAAATATTAAATTTAAT
1 TAAATATTAAATCTAAT
*
51558438 TTAATATTAAATCT-AT
1 TAAATATTAAATCTAAT
51558454 TAAA
1 TAAA
51558458 ATAATATTAT
Statistics
Matches: 66, Mismatches: 12, Indels: 15
0.71 0.13 0.16
Matches are distributed among these distances:
14 5 0.08
15 7 0.11
16 16 0.24
17 32 0.48
18 6 0.09
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.43
Consensus pattern (17 bp):
TAAATATTAAATCTAAT
Found at i:51562076 original size:11 final size:11
Alignment explanation
Indices: 51562060--51562119 Score: 66
Period size: 11 Copynumber: 5.0 Consensus size: 11
51562050 CTTAAAATTA
51562060 CATATAATTTT
1 CATATAATTTT
51562071 CATATAAATTTGAT
1 CATAT-AATTT--T
*
51562085 ATATATAATTTT
1 -CATATAATTTT
51562097 CATATAATTTT
1 CATATAATTTT
51562108 CATATAAATTTT
1 CATAT-AATTTT
51562120 AATTCGAATA
Statistics
Matches: 42, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
11 20 0.48
12 12 0.29
14 6 0.14
15 4 0.10
ACGTcount: A:0.40, C:0.07, G:0.02, T:0.52
Consensus pattern (11 bp):
CATATAATTTT
Found at i:51562090 original size:26 final size:26
Alignment explanation
Indices: 51562061--51562113 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
51562051 TTAAAATTAC
*
51562061 ATATAATTTTCATATAAATTTGATAT
1 ATATAATTTTCATATAAATTTCATAT
*
51562087 ATATAATTTTCATATAATTTTCATAT
1 ATATAATTTTCATATAAATTTCATAT
51562113 A
1 A
51562114 AATTTTAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.42, C:0.06, G:0.02, T:0.51
Consensus pattern (26 bp):
ATATAATTTTCATATAAATTTCATAT
Found at i:51562656 original size:3 final size:3
Alignment explanation
Indices: 51562648--51562681 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
51562638 GTAGACAGGG
51562648 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
51562682 GTAGGGGACA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:51563360 original size:22 final size:23
Alignment explanation
Indices: 51563350--51563411 Score: 99
Period size: 22 Copynumber: 2.7 Consensus size: 23
51563340 TTAAAAACAA
*
51563350 TTAATTTTAATAACAAT-TAATT
1 TTAATTTTAATAAAAATATAATT
51563372 TTAATTTTAATAAAAATATAATT
1 TTAATTTTAATAAAAATATAATT
51563395 TTAATTTTAATTAAAAA
1 TTAATTTTAA-TAAAAA
51563412 ATGGCCCGGG
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
22 16 0.43
23 15 0.41
24 6 0.16
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (23 bp):
TTAATTTTAATAAAAATATAATT
Found at i:51563376 original size:16 final size:16
Alignment explanation
Indices: 51563335--51563376 Score: 75
Period size: 16 Copynumber: 2.6 Consensus size: 16
51563325 TAATTTGATA
*
51563335 TAATTTTAAAAACAAT
1 TAATTTTAATAACAAT
51563351 TAATTTTAATAACAAT
1 TAATTTTAATAACAAT
51563367 TAATTTTAAT
1 TAATTTTAAT
51563377 TTTAATAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (16 bp):
TAATTTTAATAACAAT
Found at i:51568532 original size:19 final size:20
Alignment explanation
Indices: 51568510--51568547 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
51568500 GGGCAAACTT
*
51568510 TTAATTAAAT-AAATAAAAC
1 TTAAATAAATAAAATAAAAC
51568529 TTAAATAAATAAAATAAAA
1 TTAAATAAATAAAATAAAA
51568548 ATAAGGCATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (20 bp):
TTAAATAAATAAAATAAAAC
Found at i:51568534 original size:15 final size:15
Alignment explanation
Indices: 51568514--51568542 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
51568504 AAACTTTTAA
51568514 TTAAATAAATAAAAC
1 TTAAATAAATAAAAC
51568529 TTAAATAAATAAAA
1 TTAAATAAATAAAA
51568543 TAAAAATAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (15 bp):
TTAAATAAATAAAAC
Found at i:51569043 original size:28 final size:30
Alignment explanation
Indices: 51568985--51569043 Score: 70
Period size: 28 Copynumber: 2.0 Consensus size: 30
51568975 GGAATTTAAG
*
51568985 GTTTAGGGACTAAATTGTGATAAATGTAAAA
1 GTTTAGGGAC-AAATTGTGATAAATATAAAA
51569016 GTTTAGGGA-AAA-TGTG-TAAATAATAAAA
1 GTTTAGGGACAAATTGTGATAAAT-ATAAAA
51569044 ATTAAGGGTC
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
27 5 0.19
28 9 0.35
29 3 0.12
31 9 0.35
ACGTcount: A:0.46, C:0.02, G:0.22, T:0.31
Consensus pattern (30 bp):
GTTTAGGGACAAATTGTGATAAATATAAAA
Found at i:51569485 original size:20 final size:20
Alignment explanation
Indices: 51569460--51569525 Score: 53
Period size: 20 Copynumber: 3.3 Consensus size: 20
51569450 CACATACGTG
51569460 CCCCTGTTTGTACTTCGGTA
1 CCCCTGTTTGTACTTCGGTA
** * ** *
51569480 CCCCTGAATGCAAAT-GCGTG
1 CCCCTGTTTGTACTTCG-GTA
51569500 CCCCTGTTTGTACTTCGGTA
1 CCCCTGTTTGTACTTCGGTA
*
51569520 TCCCTG
1 CCCCTG
51569526 AATGCACATG
Statistics
Matches: 31, Mismatches: 13, Indels: 4
0.65 0.27 0.08
Matches are distributed among these distances:
19 1 0.03
20 29 0.94
21 1 0.03
ACGTcount: A:0.14, C:0.32, G:0.21, T:0.33
Consensus pattern (20 bp):
CCCCTGTTTGTACTTCGGTA
Found at i:51569500 original size:40 final size:40
Alignment explanation
Indices: 51569443--51569667 Score: 306
Period size: 40 Copynumber: 5.6 Consensus size: 40
51569433 GAAAATGTCT
51569443 CTGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCC
1 CTGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCC
* * *
51569483 CTGAATGCAAATGCGTGCCCCTGTTTGTACTTCGGTATCC
1 CTGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCC
* * * *
51569523 CTGAATGCACATGCATGCCCCTGTTTGTACTTTGATACCC
1 CTGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCC
** *
51569563 CCAAATGCACATACGTGCCCTTGTTTGTACTTCGGTACCC
1 CTGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCC
* * *
51569603 CTGAATGCACATATGTTCCCCTATTTGTACTTCGGTACCC
1 CTGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCC
* * *
51569643 TTAAATGCACATGCGTGCCCCTGTT
1 CTGAATGCACATACGTGCCCCTGTT
51569668 CTACATCTAT
Statistics
Matches: 158, Mismatches: 27, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 158 1.00
ACGTcount: A:0.19, C:0.30, G:0.19, T:0.32
Consensus pattern (40 bp):
CTGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCC
Found at i:51569662 original size:120 final size:120
Alignment explanation
Indices: 51569446--51569667 Score: 356
Period size: 120 Copynumber: 1.9 Consensus size: 120
51569436 AATGTCTCTG
* *
51569446 AATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCTGAATGCAAATGCGTGCCCCTGTTTGT
1 AATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCTGAATGCAAATACGTGCCCCTATTTGT
*
51569511 ACTTCGGTATCCCTGAATGCACATGCATGCCCCTGTTTGTACTTTGATACCCCCA
66 ACTTCGGTATCCCTAAATGCACATGCATGCCCCTGTTTGTACTTTGATACCCCCA
* * * *
51569566 AATGCACATACGTGCCCTTGTTTGTACTTCGGTACCCCTGAATGCACATATGTTCCCCTATTTGT
1 AATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCTGAATGCAAATACGTGCCCCTATTTGT
*
51569631 ACTTCGGTA-CCCTTAAATGCACATGCGTGCCCCTGTT
66 ACTTCGGTATCCC-TAAATGCACATGCATGCCCCTGTT
51569668 CTACATCTAT
Statistics
Matches: 93, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
119 3 0.03
120 90 0.97
ACGTcount: A:0.19, C:0.30, G:0.18, T:0.32
Consensus pattern (120 bp):
AATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCTGAATGCAAATACGTGCCCCTATTTGT
ACTTCGGTATCCCTAAATGCACATGCATGCCCCTGTTTGTACTTTGATACCCCCA
Found at i:51573603 original size:20 final size:20
Alignment explanation
Indices: 51573572--51573634 Score: 63
Period size: 20 Copynumber: 3.1 Consensus size: 20
51573562 AATTGCCGGA
*
51573572 AATGTGGACAAGCCACCAAT
1 AATGTAGACAAGCCACCAAT
* ** *
51573592 ATTGTAGACAAGCTGCCAGT
1 AATGTAGACAAGCCACCAAT
* *
51573612 AATGTGGACAAGTCACCAAT
1 AATGTAGACAAGCCACCAAT
51573632 AAT
1 AAT
51573635 ACATATAAAC
Statistics
Matches: 32, Mismatches: 11, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.21
Consensus pattern (20 bp):
AATGTAGACAAGCCACCAAT
Found at i:51575260 original size:16 final size:16
Alignment explanation
Indices: 51575221--51575253 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
51575211 CGTTTGGTTC
51575221 GCTGTAATGGAATAGA
1 GCTGTAATGGAATAGA
51575237 GCTGTAATGGAATAGA
1 GCTGTAATGGAATAGA
51575253 G
1 G
51575254 GCGTAATAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.36, C:0.06, G:0.33, T:0.24
Consensus pattern (16 bp):
GCTGTAATGGAATAGA
Found at i:51575332 original size:44 final size:44
Alignment explanation
Indices: 51575272--51575378 Score: 214
Period size: 44 Copynumber: 2.4 Consensus size: 44
51575262 GTAATTCAAT
51575272 TGTTTGGTTGAATGGAATGGAATAGAACTGTAATAATATTCTTG
1 TGTTTGGTTGAATGGAATGGAATAGAACTGTAATAATATTCTTG
51575316 TGTTTGGTTGAATGGAATGGAATAGAACTGTAATAATATTCTTG
1 TGTTTGGTTGAATGGAATGGAATAGAACTGTAATAATATTCTTG
51575360 TGTTTGGTTGAATGGAATG
1 TGTTTGGTTGAATGGAATG
51575379 ATGTTGTAAT
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 63 1.00
ACGTcount: A:0.30, C:0.04, G:0.27, T:0.39
Consensus pattern (44 bp):
TGTTTGGTTGAATGGAATGGAATAGAACTGTAATAATATTCTTG
Found at i:51575582 original size:18 final size:17
Alignment explanation
Indices: 51575539--51575591 Score: 56
Period size: 18 Copynumber: 3.1 Consensus size: 17
51575529 TTATTAAATA
* *
51575539 TAATTTAATAAAAATAT
1 TAATTTAATAAAATTCT
51575556 ATAATTTAATAAAATTCT
1 -TAATTTAATAAAATTCT
51575574 TAATATT-A-AAAATTCT
1 TAAT-TTAATAAAATTCT
51575590 TA
1 TA
51575592 TATGAATTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
16 10 0.31
17 5 0.16
18 17 0.53
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (17 bp):
TAATTTAATAAAATTCT
Found at i:51583113 original size:25 final size:26
Alignment explanation
Indices: 51583081--51583135 Score: 71
Period size: 24 Copynumber: 2.2 Consensus size: 26
51583071 TTATTAAATT
*
51583081 ATATATTTTAATTATAA-TATATTTA
1 ATATATTTTAATAATAATTATATTTA
*
51583106 ATATA-TTTAATAATAATTATGTTTA
1 ATATATTTTAATAATAATTATATTTA
51583131 A-ATAT
1 ATATAT
51583136 GATTAAATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
24 13 0.50
25 13 0.50
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (26 bp):
ATATATTTTAATAATAATTATATTTA
Found at i:51583322 original size:44 final size:45
Alignment explanation
Indices: 51583273--51583367 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 45
51583263 TTACACCTCT
* *
51583273 ATTACATTCAACCAAACA-CAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
** *
51583317 ATTACATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
51583362 ATTACA
1 ATTACA
51583368 CCTCTAATCC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
Found at i:51583367 original size:16 final size:16
Alignment explanation
Indices: 51583346--51583383 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
51583336 TTGATTTGCT
*
51583346 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
51583362 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
*
51583378 AATACA
1 ATTACA
51583384 GCGAACCAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.34, C:0.34, G:0.00, T:0.32
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:51592161 original size:18 final size:19
Alignment explanation
Indices: 51592126--51592173 Score: 53
Period size: 18 Copynumber: 2.5 Consensus size: 19
51592116 TATGCATGGT
* *
51592126 AAATAATAAAAGTTAACAA
1 AAATAATAAAAATAAACAA
51592145 AAATAA-AAAAATAAACAA
1 AAATAATAAAAATAAACAA
*
51592163 ACAAGAATAAA
1 A-AATAATAAA
51592174 GACATTTAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
18 11 0.46
19 10 0.42
20 3 0.12
ACGTcount: A:0.75, C:0.06, G:0.04, T:0.15
Consensus pattern (19 bp):
AAATAATAAAAATAAACAA
Found at i:51594399 original size:87 final size:86
Alignment explanation
Indices: 51594141--51594457 Score: 311
Period size: 87 Copynumber: 3.6 Consensus size: 86
51594131 CTACTGCCAA
*
51594141 TTCAGAGAGATAAGATTCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATTATGT
1 TTCAGAGAGATAAGA-TCTTTATTTTAATCCGCTCCACTGTAACCTCAGGGAGATAGGATTATGT
51594206 CTTTAATCTGCTCCGCTGTAAC
65 CTTTAATCTGCTCCGCTGTAAC
* * * ** ** * * * *
51594228 CTCAGGGAGATAAGATCTTCAATTCTTCGGTCTACTCCGCTGTAACCTCAGGGAAATAAGACCTG
1 TTCAGAGAGATAAGATCTT-TATT-TT-AATCCGCTCCACTGTAACCTCAGGGAGATAGGA--TT
* * **
51594293 ATG-C---GATCTACTCTACTGTAAC
61 ATGTCTTTAATCTGCTCCGCTGTAAC
*
51594315 TTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATTATGT
1 TTCAGAGAGATAAGAT-CTTTATTTTAATCCGCTCCACTGTAACCTCAGGGAGATAGGATTATGT
51594380 CTTTAATCTGCTCCGCTGTAA-
65 CTTTAATCTGCTCCGCTGTAAC
* * * * * *
51594401 TCTCAGGGAGATAAGATCTCTAGCTTCAATCTGCTCCACTGTAACCTCCGGGAGATA
1 T-TCAGAGAGATAAGATCTTTA-TTTTAATCCGCTCCACTGTAACCTCAGGGAGATA
51594458 AGATCTGAAA
Statistics
Matches: 179, Mismatches: 39, Indels: 24
0.74 0.16 0.10
Matches are distributed among these distances:
83 4 0.02
84 1 0.01
85 25 0.14
86 11 0.06
87 103 0.58
88 5 0.03
89 25 0.14
90 1 0.01
91 4 0.02
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (86 bp):
TTCAGAGAGATAAGATCTTTATTTTAATCCGCTCCACTGTAACCTCAGGGAGATAGGATTATGTC
TTTAATCTGCTCCGCTGTAAC
Found at i:51594462 original size:44 final size:43
Alignment explanation
Indices: 51594167--51594802 Score: 232
Period size: 44 Copynumber: 14.8 Consensus size: 43
51594157 TCTTTATTTT
* * * * *
51594167 AATCCGCTCCACTGTAACTTCAGGGAGATAGGAT-TATGTCTTT
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTG-CTTC
* *
51594210 AATCTGCTCCGCTGTAACCTCAGGGAGATAAGATCTTCAATTCTTC
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATC-TC--TGCTTC
** * * * * *
51594256 GGTCTACTCCGCTGTAACCTCAGGGAAATAAGA-C-CTGATGC
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGCTTC
* * * * * * ** *
51594297 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTT
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGAT-CTCTGCTTC
* * * * *
51594341 AATCCGCTCCACTGTAACTTCAGGGAGATAGGAT-TATGTCTTT
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTG-CTTC
* *
51594384 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTAGCTTC
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GCTTC
* * * *
51594428 AATCTGCTCCACTGTAACCTCCGGGAGATAAGATCTGAAATTCTTT
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT---CTGCTTC
** * * *
51594474 GGTCTGTTCCACTGTAATCTCAGGGAGATAAGA-C-CTGATGT-
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGCT-TC
* * * * * *
51594515 GATCTTCTCTACCGTAACTTCAGAGAGATAAGATC-CT--TT-
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGCTTC
* * * * * ** *
51594554 AATCCGCTCCATTGTAATCTCAAGGAGATAGGAT-TACTATTTT
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT-CTGCTTC
* * * * * * *
51594597 GATCTGCTCCGCTGTAATCTCAAGGAGATAAGATCTGAAATTCTTT
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT---CTGCTTC
** * * *
51594643 GGTCTGTTCCACTGTAATCTCAGGGAGATAAGA-C-CTGATGT-
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGCT-TC
* * * * * *
51594684 GATCTTCTCTACCGTAACTTCAGAGAGATAAGATC-CT--TT-
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGCTTC
* * * * * * *
51594723 AATCCGCTCCATTGTAATCTCAAGGAGATAGGAT-TACTATCTTT
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT-CT-GCTTC
* * * *
51594767 GATCTGCTCCGCTGTAATCTCAAGGAGATAAGATCT
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT
51594803 GAAATTCTTT
Statistics
Matches: 448, Mismatches: 113, Indels: 62
0.72 0.18 0.10
Matches are distributed among these distances:
39 48 0.11
40 6 0.01
41 84 0.19
42 12 0.03
43 95 0.21
44 98 0.22
45 6 0.01
46 97 0.22
47 2 0.00
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.31
Consensus pattern (43 bp):
AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGCTTC
Found at i:51594635 original size:169 final size:169
Alignment explanation
Indices: 51594380--51594849 Score: 798
Period size: 169 Copynumber: 2.8 Consensus size: 169
51594370 AGGATTATGT
* ** * * * ** *
51594380 CTTTAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCT-CTAGCTTCAATCTGCTCCACTGTA
1 CTTTAATCCGCTCCATTGTAATCTCAAGGAGATAGGAT-TACTA-TTTTGATCTGCTCCGCTGTA
* **
51594444 ACCTCCGGGAGATAAGATCTGAAATTCTTTGGTCTGTTCCACTGTAATCTCAGGGAGATAAGACC
64 ATCTCAAGGAGATAAGATCTGAAATTCTTTGGTCTGTTCCACTGTAATCTCAGGGAGATAAGACC
51594509 TGATGTGATCTTCTCTACCGTAACTTCAGAGAGATAAGATC
129 TGATGTGATCTTCTCTACCGTAACTTCAGAGAGATAAGATC
51594550 CTTTAATCCGCTCCATTGTAATCTCAAGGAGATAGGATTACTATTTTGATCTGCTCCGCTGTAAT
1 CTTTAATCCGCTCCATTGTAATCTCAAGGAGATAGGATTACTATTTTGATCTGCTCCGCTGTAAT
51594615 CTCAAGGAGATAAGATCTGAAATTCTTTGGTCTGTTCCACTGTAATCTCAGGGAGATAAGACCTG
66 CTCAAGGAGATAAGATCTGAAATTCTTTGGTCTGTTCCACTGTAATCTCAGGGAGATAAGACCTG
51594680 ATGTGATCTTCTCTACCGTAACTTCAGAGAGATAAGATC
131 ATGTGATCTTCTCTACCGTAACTTCAGAGAGATAAGATC
51594719 CTTTAATCCGCTCCATTGTAATCTCAAGGAGATAGGATTACTATCTTTGATCTGCTCCGCTGTAA
1 CTTTAATCCGCTCCATTGTAATCTCAAGGAGATAGGATTACTAT-TTTGATCTGCTCCGCTGTAA
51594784 TCTCAAGGAGATAAGATCTGAAATTCTTTGGTCTGTTCCACTGTAATCTCAGGGAGATAAGACCT
65 TCTCAAGGAGATAAGATCTGAAATTCTTTGGTCTGTTCCACTGTAATCTCAGGGAGATAAGACCT
51594849 G
130 G
51594850 TATTATGAAC
Statistics
Matches: 286, Mismatches: 12, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
169 164 0.57
170 122 0.43
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (169 bp):
CTTTAATCCGCTCCATTGTAATCTCAAGGAGATAGGATTACTATTTTGATCTGCTCCGCTGTAAT
CTCAAGGAGATAAGATCTGAAATTCTTTGGTCTGTTCCACTGTAATCTCAGGGAGATAAGACCTG
ATGTGATCTTCTCTACCGTAACTTCAGAGAGATAAGATC
Found at i:51594675 original size:46 final size:45
Alignment explanation
Indices: 51594172--51594845 Score: 279
Period size: 46 Copynumber: 15.6 Consensus size: 45
51594162 ATTTTAATCC
* * *
51594172 GCTCCACTGTAA-CTTCAGGGAGATAGGAT-T--ATGTCTTTAATCT
1 GCTCCACTGTAATC-TCAAGGAGATAAGATCTGAAT-TCTTTGATCT
* * * * * *
51594215 GCTCCGCTGTAACCTCAGGGAGATAAGATCTTCAATTCTTCGGTCT
1 GCTCCACTGTAATCTCAAGGAGATAAGATC-TGAATTCTTTGATCT
* * * * * * *
51594261 ACTCCGCTGTAACCTCAGGGAAATAAGACCTG-ATGC---GATCT
1 GCTCCACTGTAATCTCAAGGAGATAAGATCTGAATTCTTTGATCT
* * ** * *
51594302 ACTCTACTGTAA-CTTC-AGAGAGATAAGATCCTTTA-T-TTTAATCC
1 GCTCCACTGTAATC-TCAAG-GAGATAAGAT-CTGAATTCTTTGATCT
* * *
51594346 GCTCCACTGTAA-CTTCAGGGAGATAGGAT-T--ATGTCTTTAATCT
1 GCTCCACTGTAATC-TCAAGGAGATAAGATCTGAAT-TCTTTGATCT
* * ** * **
51594389 GCTCCGCTGTAATCTCAGGGAGATAAGATCTCTA-GCTTCAATCT
1 GCTCCACTGTAATCTCAAGGAGATAAGATCTGAATTCTTTGATCT
* ** *
51594433 GCTCCACTGTAACCTCCGGGAGATAAGATCTGAAATTCTTTGGTCT
1 GCTCCACTGTAATCTCAAGGAGATAAGATCTG-AATTCTTTGATCT
* * * *
51594479 GTTCCACTGTAATCTCAGGGAGATAAGACCTG-A---TGTGATCT
1 GCTCCACTGTAATCTCAAGGAGATAAGATCTGAATTCTTTGATCT
* * * * *
51594520 TCTCTACCGTAA-CTTC-AGAGAGATAAGATC------CTTTAATCC
1 GCTCCACTGTAATC-TCAAG-GAGATAAGATCTGAATTCTTTGATCT
* * *
51594559 GCTCCATTGTAATCTCAAGGAGATAGGAT-T-ACTAT-TTTGATCT
1 GCTCCACTGTAATCTCAAGGAGATAAGATCTGAAT-TCTTTGATCT
* *
51594602 GCTCCGCTGTAATCTCAAGGAGATAAGATCTGAAATTCTTTGGTCT
1 GCTCCACTGTAATCTCAAGGAGATAAGATCTG-AATTCTTTGATCT
* * * *
51594648 GTTCCACTGTAATCTCAGGGAGATAAGACCTG-A---TGTGATCT
1 GCTCCACTGTAATCTCAAGGAGATAAGATCTGAATTCTTTGATCT
* * * * *
51594689 TCTCTACCGTAA-CTTC-AGAGAGATAAGATC------CTTTAATCC
1 GCTCCACTGTAATC-TCAAG-GAGATAAGATCTGAATTCTTTGATCT
* * *
51594728 GCTCCATTGTAATCTCAAGGAGATAGGAT-T-ACTATCTTTGATCT
1 GCTCCACTGTAATCTCAAGGAGATAAGATCTGAAT-TCTTTGATCT
* *
51594772 GCTCCGCTGTAATCTCAAGGAGATAAGATCTGAAATTCTTTGGTCT
1 GCTCCACTGTAATCTCAAGGAGATAAGATCTG-AATTCTTTGATCT
* *
51594818 GTTCCACTGTAATCTCAGGGAGATAAGA
1 GCTCCACTGTAATCTCAAGGAGATAAGA
51594846 CCTGTATTAT
Statistics
Matches: 485, Mismatches: 95, Indels: 99
0.71 0.14 0.15
Matches are distributed among these distances:
39 48 0.10
40 13 0.03
41 76 0.16
42 4 0.01
43 90 0.19
44 104 0.21
45 6 0.01
46 140 0.29
47 4 0.01
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (45 bp):
GCTCCACTGTAATCTCAAGGAGATAAGATCTGAATTCTTTGATCT
Found at i:51606905 original size:19 final size:19
Alignment explanation
Indices: 51606881--51606929 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
51606871 TATGCATGGT
* *
51606881 AAATAATAAAAGTTAACAA
1 AAATAATAAAAATAAACAA
*
51606900 AAATAAAAAAAATAAACAA
1 AAATAATAAAAATAAACAA
*
51606919 ACAAGAATAAA
1 A-AATAATAAA
51606930 GACATTTAAG
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.76, C:0.06, G:0.04, T:0.14
Consensus pattern (19 bp):
AAATAATAAAAATAAACAA
Found at i:51607228 original size:15 final size:15
Alignment explanation
Indices: 51607210--51607240 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
51607200 TAGTATATGT
*
51607210 ATATTAAATATATAA
1 ATATTAAATAAATAA
51607225 ATATTAAATAAATAA
1 ATATTAAATAAATAA
51607240 A
1 A
51607241 AGCGGGATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (15 bp):
ATATTAAATAAATAA
Found at i:51607376 original size:4 final size:4
Alignment explanation
Indices: 51607369--51607405 Score: 51
Period size: 4 Copynumber: 9.5 Consensus size: 4
51607359 GCACATATAT
51607369 ATAA AT-A ATAA ATATA AT-A ATAA ATAA ATAA ATAA AT
1 ATAA ATAA ATAA ATA-A ATAA ATAA ATAA ATAA ATAA AT
51607406 GATCAAAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
3 6 0.20
4 21 0.70
5 3 0.10
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (4 bp):
ATAA
Found at i:51608773 original size:40 final size:40
Alignment explanation
Indices: 51608698--51608773 Score: 91
Period size: 40 Copynumber: 1.9 Consensus size: 40
51608688 ACTGTTCATG
* **
51608698 CCACGTCAGCAAATCGCGTCCTAGGGGGCGTGATTTGTGT
1 CCACGTCAGCAAATCGCGTCCTAGGGGACACGATTTGTGT
* *
51608738 CCACGTCAGCAAATCGCG-CTTACGTGGACACGATTT
1 CCACGTCAGCAAATCGCGTCCTA-GGGGACACGATTT
51608774 CCTGGCGCGT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
39 3 0.10
40 27 0.90
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.24
Consensus pattern (40 bp):
CCACGTCAGCAAATCGCGTCCTAGGGGACACGATTTGTGT
Found at i:51610595 original size:24 final size:24
Alignment explanation
Indices: 51610538--51610596 Score: 59
Period size: 25 Copynumber: 2.4 Consensus size: 24
51610528 AATCACATTA
51610538 AATAT-ATATAAATTATAAAAAAAT
1 AATATAATA-AAATTATAAAAAAAT
* *
51610562 TATAAAAATAAAATT-TACAAAAAAT
1 AAT-ATAATAAAATTATA-AAAAAAT
51610587 AATATAATAA
1 AATATAATAA
51610597 TTGAAAAGAA
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
24 10 0.36
25 15 0.54
26 3 0.11
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.31
Consensus pattern (24 bp):
AATATAATAAAATTATAAAAAAAT
Found at i:51610661 original size:14 final size:13
Alignment explanation
Indices: 51610636--51610660 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51610626 ATTATTACAA
51610636 AAAATTGTAAAAG
1 AAAATTGTAAAAG
51610649 AAAATTGTAAAA
1 AAAATTGTAAAA
51610661 ATTATAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (13 bp):
AAAATTGTAAAAG
Found at i:51610673 original size:21 final size:22
Alignment explanation
Indices: 51610635--51610682 Score: 80
Period size: 21 Copynumber: 2.2 Consensus size: 22
51610625 TATTATTACA
*
51610635 AAAAATTGTAAAAGAAAATTGT
1 AAAAATTATAAAAGAAAATTGT
51610657 AAAAATTATAAAA-AAAATTGT
1 AAAAATTATAAAAGAAAATTGT
51610678 AAAAA
1 AAAAA
51610683 AATATTTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
21 13 0.52
22 12 0.48
ACGTcount: A:0.67, C:0.00, G:0.08, T:0.25
Consensus pattern (22 bp):
AAAAATTATAAAAGAAAATTGT
Found at i:51610677 original size:34 final size:33
Alignment explanation
Indices: 51610634--51610703 Score: 106
Period size: 33 Copynumber: 2.1 Consensus size: 33
51610624 ATATTATTAC
*
51610634 AAAAAATTGTAAAAGAAA-ATTGTAAAAATTATAA
1 AAAAAATTGTAAAA-AAATATT-TAAAAAGTATAA
51610668 AAAAAATTGTAAAAAAATATTTAAAAAGTATAA
1 AAAAAATTGTAAAAAAATATTTAAAAAGTATAA
51610701 AAA
1 AAA
51610704 TGATTTTTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
33 17 0.50
34 17 0.50
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (33 bp):
AAAAAATTGTAAAAAAATATTTAAAAAGTATAA
Found at i:51610683 original size:22 final size:23
Alignment explanation
Indices: 51610634--51610683 Score: 77
Period size: 22 Copynumber: 2.3 Consensus size: 23
51610624 ATATTATTAC
*
51610634 AAAAAATTGTAAAAGAAAATTGT
1 AAAAAATTATAAAAGAAAATTGT
51610657 -AAAAATTATAAAA-AAAATTGT
1 AAAAAATTATAAAAGAAAATTGT
51610678 AAAAAA
1 AAAAAA
51610684 ATATTTAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
21 8 0.32
22 17 0.68
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (23 bp):
AAAAAATTATAAAAGAAAATTGT
Found at i:51610693 original size:11 final size:12
Alignment explanation
Indices: 51610634--51610694 Score: 67
Period size: 12 Copynumber: 5.2 Consensus size: 12
51610624 ATATTATTAC
51610634 AAAAAATTGTAA
1 AAAAAATTGTAA
51610646 AAGAAAATTGT--
1 AA-AAAATTGTAA
*
51610657 -AAAAATTATAA
1 AAAAAATTGTAA
51610668 AAAAAATTGTAA
1 AAAAAATTGTAA
51610680 AAAAATATT-TAA
1 AAAAA-ATTGTAA
51610692 AAA
1 AAA
51610695 GTATAAAAAT
Statistics
Matches: 42, Mismatches: 2, Indels: 10
0.78 0.04 0.19
Matches are distributed among these distances:
9 7 0.17
10 1 0.02
12 23 0.55
13 11 0.26
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (12 bp):
AAAAAATTGTAA
Found at i:51623704 original size:35 final size:35
Alignment explanation
Indices: 51623658--51623727 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
51623648 ACATACCACA
51623658 ATCTCATATAACTTACAATTCTTTTTTGAGTGCAT
1 ATCTCATATAACTTACAATTCTTTTTTGAGTGCAT
51623693 ATCTCATATAACTTACAATTCTTTTTTGAGTGCAT
1 ATCTCATATAACTTACAATTCTTTTTTGAGTGCAT
51623728 GTATAACAGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.29, C:0.17, G:0.09, T:0.46
Consensus pattern (35 bp):
ATCTCATATAACTTACAATTCTTTTTTGAGTGCAT
Found at i:51647330 original size:42 final size:42
Alignment explanation
Indices: 51647272--51647384 Score: 120
Period size: 42 Copynumber: 2.7 Consensus size: 42
51647262 TTAACTCATA
* * * * *
51647272 TGAGTTTCAGTTTAACCC-TATTGGGTTTCAGTTTAGTTCTTT
1 TGAGCTTCAATTTAACCCTTA-TGGGTTTCAGTTCAGCTCTGT
*
51647314 TGAGCTTCAATTTAACCCTTATGGGTTTCCGTTCAGCTCTGT
1 TGAGCTTCAATTTAACCCTTATGGGTTTCAGTTCAGCTCTGT
** * *
51647356 TGAGCTTCCGTTCAACCTTTATGGGTTTC
1 TGAGCTTCAATTTAACCCTTATGGGTTTC
51647385 TGTTTAGCAC
Statistics
Matches: 60, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
42 58 0.97
43 2 0.03
ACGTcount: A:0.16, C:0.20, G:0.19, T:0.44
Consensus pattern (42 bp):
TGAGCTTCAATTTAACCCTTATGGGTTTCAGTTCAGCTCTGT
Found at i:51662679 original size:27 final size:27
Alignment explanation
Indices: 51662632--51662740 Score: 159
Period size: 27 Copynumber: 4.0 Consensus size: 27
51662622 CACAATAGTC
51662632 AATTTTACCCATCG-GGCGTATTTCGGT
1 AATTTTACCCATCGAGG-GTATTTCGGT
*
51662659 AATTTTACCCGTCGAGGGTATTTCGGT
1 AATTTTACCCATCGAGGGTATTTCGGT
*
51662686 AATTTTACCCATCGAGGGTA-TTCTGAT
1 AATTTTACCCATCGAGGGTATTTC-GGT
*
51662713 AATTTTACCCATCGAGGATATTTCGGT
1 AATTTTACCCATCGAGGGTATTTCGGT
51662740 A
1 A
51662741 CAGTTAACGA
Statistics
Matches: 74, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
26 3 0.04
27 66 0.89
28 5 0.07
ACGTcount: A:0.23, C:0.19, G:0.21, T:0.37
Consensus pattern (27 bp):
AATTTTACCCATCGAGGGTATTTCGGT
Found at i:51675581 original size:59 final size:59
Alignment explanation
Indices: 51675515--51675702 Score: 199
Period size: 59 Copynumber: 3.2 Consensus size: 59
51675505 AGTGAGGGGA
51675515 ATTATATATATTTAGTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGT
1 ATTATATATATTTAGTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGT
* * * *
51675574 ATTATATATTATGATTTTAGTAAATTCATA--TAAGAATATTTAATATT-AA-GA-ATTTTATTA
1 A-T-TATA-TAT-A-TTTAGTAAATT-ATATTTAATAATAATT-ATTTTAAATTATATTTTA-TA
*
51675634 -A
58 GT
* *
51675635 ATTATATATTTTTAATAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGT
1 ATTATATATATTTAGTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGT
51675694 ATTATATAT
1 ATTATATAT
51675703 TATGATTTTA
Statistics
Matches: 103, Mismatches: 12, Indels: 28
0.72 0.08 0.20
Matches are distributed among these distances:
55 3 0.03
56 14 0.14
57 11 0.11
58 6 0.06
59 20 0.19
60 2 0.02
61 11 0.11
62 6 0.06
63 12 0.12
64 15 0.15
65 3 0.03
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.53
Consensus pattern (59 bp):
ATTATATATATTTAGTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGT
Found at i:51675639 original size:61 final size:61
Alignment explanation
Indices: 51675574--51675764 Score: 212
Period size: 61 Copynumber: 3.2 Consensus size: 61
51675564 ATTTTATAGT
51675574 ATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAA
1 ATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAA
* * * ** * * * * * *
51675635 ATTATATATTTTTAATAAATTATATTTA-ATAATAATTATTTTAA-ATT-A-TATTTTA-TAGT
1 ATTATATATTATGATTTTAGTAAATTCATATAAGAA-TA-TTTAATATTAAGAATTTTATTA-A
*
51675694 ATTATATATTATGATTTTAGTAAATCCATATAAGAATATTTAATATTAAGAATTTTATTAA
1 ATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAA
51675755 ATTATATATT
1 ATTATATATT
51675765 TTAATTAAAA
Statistics
Matches: 99, Mismatches: 23, Indels: 16
0.72 0.17 0.12
Matches are distributed among these distances:
58 7 0.07
59 30 0.30
60 14 0.14
61 41 0.41
62 7 0.07
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (61 bp):
ATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAA
Found at i:51675641 original size:120 final size:119
Alignment explanation
Indices: 51675514--51675799 Score: 500
Period size: 120 Copynumber: 2.4 Consensus size: 119
51675504 AAGTGAGGGG
*
51675514 AATTATATATATTTAGTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTAT
1 AATTATATAT-TTTAATAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTAT
*
51675579 ATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTA
65 ATATTATGATTTTAGTAAATCCATATAAGAATATTTAATATTAAGAATTTTATTA
51675634 AATTATATATTTTTAATAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTAT
1 AATTATATA-TTTTAATAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTAT
51675699 ATATTATGATTTTAGTAAATCCATATAAGAATATTTAATATTAAGAATTTTATTA
65 ATATTATGATTTTAGTAAATCCATATAAGAATATTTAATATTAAGAATTTTATTA
* * *
51675754 AATTATATATTTTAATTAAAATATATTTAATTATAATTATGTTAAA
1 AATTATATATTTTAA-TAAATTATATTTAATAATAATTATTTTAAA
51675800 ATATGATTAA
Statistics
Matches: 159, Mismatches: 5, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
119 6 0.04
120 152 0.96
121 1 0.01
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (119 bp):
AATTATATATTTTAATAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATA
TATTATGATTTTAGTAAATCCATATAAGAATATTTAATATTAAGAATTTTATTA
Found at i:51675734 original size:59 final size:59
Alignment explanation
Indices: 51675551--51675734 Score: 194
Period size: 59 Copynumber: 3.1 Consensus size: 59
51675541 TAATAATAAT
51675551 TATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAA
1 TATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAA
* * * * * ** * * * *
51675610 TA-TTTAATATTAAGAATTTTATTA-AATTATATATTTTTAATAAATTATATTTA-ATAATAA
1 TATTTTAA-ATT-A-TATTTTA-TAGTATTATATATTATGATTTTAGTAAATTCATATAAGAA
*
51675670 TTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATCCATATAAGAA
1 -TATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAA
51675730 TATTT
1 TATTT
51675735 AATATTAAGA
Statistics
Matches: 94, Mismatches: 23, Indels: 16
0.71 0.17 0.12
Matches are distributed among these distances:
58 7 0.07
59 35 0.37
60 14 0.15
61 31 0.33
62 7 0.07
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.52
Consensus pattern (59 bp):
TATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAA
Found at i:51675761 original size:59 final size:58
Alignment explanation
Indices: 51675578--51675761 Score: 180
Period size: 59 Copynumber: 3.1 Consensus size: 58
51675568 TATAGTATTA
51675578 TATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAAT
1 TATATTATGATTTTAGTAAA-TCATATAAGAATATTTAATATTAAGAATTTTATTAAAT
* * * * * * *
51675637 TATA-TAT--TTTTAATAAATTATATTTAATAATAATT-ATTTTAAATTATATTTTA-TAGTATT
1 TATATTATGATTTTAGTAAATCATA--TAAGAATATTTAATATT-AA-GA-ATTTTATTA--AAT
51675697 ATATATTATGATTTTAGTAAATCCATATAAGAATATTTAATATTAAGAATTTTATTAAAT
1 -TATATTATGATTTTAGTAAAT-CATATAAGAATATTTAATATTAAGAATTTTATTAAAT
51675757 TATAT
1 TATAT
51675762 ATTTTAATTA
Statistics
Matches: 97, Mismatches: 14, Indels: 28
0.70 0.10 0.20
Matches are distributed among these distances:
55 4 0.04
56 13 0.13
57 11 0.11
58 6 0.06
59 15 0.15
60 4 0.04
61 10 0.10
62 6 0.06
63 11 0.11
64 14 0.14
65 3 0.03
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (58 bp):
TATATTATGATTTTAGTAAATCATATAAGAATATTTAATATTAAGAATTTTATTAAAT
Found at i:51675771 original size:18 final size:18
Alignment explanation
Indices: 51675745--51675793 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 18
51675735 AATATTAAGA
51675745 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAATTATAT
51675762 ATTTTAATTAAA--ATAT
1 ATTTTAATTAAATTATAT
51675778 A-TTTAATTATAATTAT
1 ATTTTAATTA-AATTAT
51675794 GTTAAAATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
15 8 0.29
16 7 0.25
17 5 0.18
18 8 0.29
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
ATTTTAATTAAATTATAT
Found at i:51675788 original size:26 final size:27
Alignment explanation
Indices: 51675736--51675814 Score: 79
Period size: 27 Copynumber: 2.9 Consensus size: 27
51675726 AGAATATTTA
* *
51675736 ATATTAAGAATTTTATTAAATTATATATT
1 ATATTAA-AATATGATTAAATTATA-ATT
* *
51675765 TTAATTAAAATAT-ATTTAATTATAATT
1 AT-ATTAAAATATGATTAAATTATAATT
*
51675792 ATGTTAAAATATGATTAAATTAT
1 ATATTAAAATATGATTAAATTAT
51675815 TTATTATTGA
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
26 9 0.21
27 13 0.31
28 10 0.24
29 5 0.12
30 5 0.12
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (27 bp):
ATATTAAAATATGATTAAATTATAATT
Found at i:51675991 original size:44 final size:45
Alignment explanation
Indices: 51675936--51676032 Score: 126
Period size: 45 Copynumber: 2.2 Consensus size: 45
51675926 CTATTACACC
* *
51675936 TCCATTCCATTCAACCAAACACA-AGAA-TACTATTATGCCTCTAT
1 TCCATTACATTCAACCAAA-ACATAGAATTACTATTACGCCTCTAT
* * *
51675980 TCCATTACATTCAACCAAAATATTGAATTGCTATTACGCCTCTAT
1 TCCATTACATTCAACCAAAACATAGAATTACTATTACGCCTCTAT
51676025 TCCATTAC
1 TCCATTAC
51676033 GCCTCTATTC
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
43 2 0.04
44 21 0.46
45 23 0.50
ACGTcount: A:0.34, C:0.28, G:0.05, T:0.33
Consensus pattern (45 bp):
TCCATTACATTCAACCAAAACATAGAATTACTATTACGCCTCTAT
Found at i:51676033 original size:16 final size:16
Alignment explanation
Indices: 51676012--51676044 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
51676002 TTGAATTGCT
51676012 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
51676028 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
51676044 A
1 A
51676045 ATACAGCGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.21, C:0.36, G:0.06, T:0.36
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:51679874 original size:14 final size:14
Alignment explanation
Indices: 51679855--51679881 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
51679845 ATGTAATAGG
51679855 CCAATTTTGCCCGA
1 CCAATTTTGCCCGA
51679869 CCAATTTTGCCCG
1 CCAATTTTGCCCG
51679882 GCCCACCATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.19, C:0.37, G:0.15, T:0.30
Consensus pattern (14 bp):
CCAATTTTGCCCGA
Found at i:51681496 original size:3 final size:3
Alignment explanation
Indices: 51681484--51681533 Score: 84
Period size: 3 Copynumber: 17.0 Consensus size: 3
51681474 TGTGCTTTTA
*
51681484 TAT T-T TAT TAT TAT TGT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
51681531 TAT
1 TAT
51681534 GCATATTAGT
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
2 2 0.05
3 42 0.95
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:51683953 original size:28 final size:29
Alignment explanation
Indices: 51683921--51683983 Score: 83
Period size: 30 Copynumber: 2.2 Consensus size: 29
51683911 AATAAAAATT
* *
51683921 ATTTTATGAGAC-TAGGGGCAAAATCATA
1 ATTTTATGAAACTTAGGGGCAAAAACATA
*
51683949 ATTTTGTGAAACTTTAGGGGCAAAAACATA
1 ATTTTATGAAAC-TTAGGGGCAAAAACATA
51683979 ATTTT
1 ATTTT
51683984 TCCAAAGTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
28 10 0.33
30 20 0.67
ACGTcount: A:0.38, C:0.10, G:0.19, T:0.33
Consensus pattern (29 bp):
ATTTTATGAAACTTAGGGGCAAAAACATA
Found at i:51684337 original size:51 final size:51
Alignment explanation
Indices: 51684222--51684414 Score: 180
Period size: 51 Copynumber: 3.8 Consensus size: 51
51684212 AAAGTGATGG
* * * * *
51684222 TCACGTGTGTAGTACTATG-GCAGGCTACTACGTGTACCGGAAT-G--ATAGG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTATC-GAATAGTAAT-GA
* * * **
51684271 TCGCATGTGTAGTACTATTTGCAGGCTACTATGCGTA-CTGGATAGTTTTGA
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTATC-GAATAGTAATGA
* * * *
51684322 TCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTATCGAATGGTAATGG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTATCGAATAGTAATGA
* *
51684373 TCACATGTGTAGTACTATGTGCAGGCTACTATGTGAATCGAA
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTATCGAA
51684415 CATCATTGAT
Statistics
Matches: 119, Mismatches: 20, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
49 20 0.17
50 16 0.13
51 81 0.68
52 2 0.02
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.32
Consensus pattern (51 bp):
TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTATCGAATAGTAATGA
Found at i:51684357 original size:26 final size:26
Alignment explanation
Indices: 51684327--51684407 Score: 73
Period size: 26 Copynumber: 3.2 Consensus size: 26
51684317 TTTGATCACG
51684327 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
* *
51684353 TGTGTA-T-CGAATG-GTAATGG-TCAC-A
1 TGTGTAGTAC-TATGTG-CA-GGCT-ACTA
51684378 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
51684404 TGTG
1 TGTG
51684408 AATCGAACAT
Statistics
Matches: 42, Mismatches: 4, Indels: 18
0.66 0.06 0.28
Matches are distributed among these distances:
24 2 0.05
25 17 0.40
26 21 0.50
27 2 0.05
ACGTcount: A:0.23, C:0.14, G:0.28, T:0.35
Consensus pattern (26 bp):
TGTGTAGTACTATGTGCAGGCTACTA
Found at i:51684365 original size:100 final size:102
Alignment explanation
Indices: 51684222--51684405 Score: 293
Period size: 102 Copynumber: 1.8 Consensus size: 102
51684212 AAAGTGATGG
*
51684222 TCACGTGTGTAGTACTATGGCAGGCTACTACGTGTACCGGAATGAT-A-GGTCGCATGTGTAGTA
1 TCACGTGTGTAGTACTATGGCAGGCTACTACGTGTACCGGAATGATAATGGTCACATGTGTAGTA
*
51684285 CTATTTGCAGGCTACTATGCGTACTGGATAGTTTTGA
66 CTATGTGCAGGCTACTATGCGTACTGGATAGTTTTGA
* * *
51684322 TCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTATC-GAATGGTAATGGTCACATGTGTAGT
1 TCACGTGTGTAGTACTATG-GCAGGCTACTACGTGTACCGGAATGATAATGGTCACATGTGTAGT
51684386 ACTATGTGCAGGCTACTATG
65 ACTATGTGCAGGCTACTATG
51684406 TGAATCGAAC
Statistics
Matches: 76, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
100 25 0.33
101 18 0.24
102 33 0.43
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.33
Consensus pattern (102 bp):
TCACGTGTGTAGTACTATGGCAGGCTACTACGTGTACCGGAATGATAATGGTCACATGTGTAGTA
CTATGTGCAGGCTACTATGCGTACTGGATAGTTTTGA
Found at i:51684465 original size:45 final size:45
Alignment explanation
Indices: 51684414--51684502 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
51684404 TGTGAATCGA
* *
51684414 ACATCATTGATTAGTAAGGTGGTTGCTATGTGCTGATTCCACCGG
1 ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACCGG
51684459 ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACCG
1 ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACCG
51684503 AGTATCTGTT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.33
Consensus pattern (45 bp):
ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACCGG
Found at i:51705863 original size:29 final size:29
Alignment explanation
Indices: 51705830--51705888 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
51705820 AGGAAAGTGA
51705830 ATGCCAAACTAGGAAGGACCTTATGTGGT
1 ATGCCAAACTAGGAAGGACCTTATGTGGT
51705859 ATGCCAAACTAGGAAGGACCTTATGTGGT
1 ATGCCAAACTAGGAAGGACCTTATGTGGT
51705888 A
1 A
51705889 AAGAAGGCCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.32, C:0.17, G:0.27, T:0.24
Consensus pattern (29 bp):
ATGCCAAACTAGGAAGGACCTTATGTGGT
Found at i:51706957 original size:44 final size:43
Alignment explanation
Indices: 51706878--51707323 Score: 207
Period size: 44 Copynumber: 9.7 Consensus size: 43
51706868 TCATTGTGAA
* * * **
51706878 AAATCTTATCTCACTGAATTTGCAATGGAGCAGATTAAAGCTAC
1 AAATCTTATCTCCCT-AAGTTGCAGTGGAATAGATTAAAGCTAC
* * * *
51706922 AAATCTTATATCCCTAATGTTACATTGGAATAGATTGAAA-CGAC
1 AAATCTTATCTCCCTAA-GTTGCAGTGGAATAGATT-AAAGCTAC
* * * * * *
51706966 AAATCTTATCTCCTTGGAGTTGCAGTGAAACAGATTGAAGCTGC
1 AAATCTTATCTCCCT-AAGTTGCAGTGGAATAGATTAAAGCTAC
* * * * *
51707010 AAATCTTATTTCCCTGAAGTTACAATAGAACAGATTAAAGCTACAAGTTAC
1 AAATCTTATCTCCCT-AAGTTGCAGTGGAATAGATTAAAG---C----TAC
51707061 AAATCTTATCTCCCTAAAGTTGCAGTGGAATAGATTGAAA-CTAC
1 AAATCTTATCTCCCT-AAGTTGCAGTGGAATAGATT-AAAGCTAC
* * *
51707105 AAATCTTATTTCCCTGAGGTTGTAGTGGAATAGATTAAAGCTACAAGTTAC
1 AAATCTTATCTCCCT-AAGTTGCAGTGGAATAGATTAAAG---C----TAC
* * *
51707156 AAATCTTATCTCCCTAAAGTTGCAG-AGAAGCAGATTGAAA-CTAT
1 AAATCTTATCTCCCT-AAGTTGCAGTGGAA-TAGATT-AAAGCTAC
* * * *
51707200 AAATCTTATTTCCTTGAGGTTGCAGTGGAACAGATTAAAGCTACAAGTTAC
1 AAATCTTATCTCCCT-AAGTTGCAGTGGAATAGATTAAAG---C----TAC
* * * * ** *
51707251 AAATTTTATCTCCTTGAAGATGTAGTGGAGCAGATTAAAGTTAC
1 AAATCTTATCTCCCT-AAGTTGCAGTGGAATAGATTAAAGCTAC
*
51707295 AAATCTCATCTCCCTGAAGTTGCAGTGGA
1 AAATCTTATCTCCCT-AAGTTGCAGTGGA
51707324 CCAAATTGAC
Statistics
Matches: 309, Mismatches: 62, Indels: 62
0.71 0.14 0.14
Matches are distributed among these distances:
43 10 0.03
44 181 0.59
45 7 0.02
47 3 0.01
48 2 0.01
50 3 0.01
51 97 0.31
52 6 0.02
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.30
Consensus pattern (43 bp):
AAATCTTATCTCCCTAAGTTGCAGTGGAATAGATTAAAGCTAC
Found at i:51707096 original size:51 final size:51
Alignment explanation
Indices: 51707009--51707323 Score: 253
Period size: 44 Copynumber: 6.6 Consensus size: 51
51706999 ATTGAAGCTG
* * * *
51707009 CAAATCTTATTTCCCTGAAGTTACAATAGAACAGATTAAAGCTACAAGTTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTA
* * *
51707060 CAAATCTTATCTCCCTAAAGTTGCAGTGGAATAGATT---G--A-AA-CTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTA
* * * *
51707104 CAAATCTTATTTCCCTGAGGTTGTAGTGGAATAGATTAAAGCTACAAGTTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTA
* *
51707155 CAAATCTTATCTCCCTAAAGTTGCAG-AGAAGCAGATTGAAA-CT---A--T-
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAA-CAGATT-AAAGCTACAAGTTA
* * *
51707200 -AAATCTTATTTCCTTGAGGTTGCAGTGGAACAGATTAAAGCTACAAGTTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTA
* * * * *
51707250 CAAATTTTATCTCCTTGAAGATGTAGTGGAGCAGA-T-----TA-AAGTTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTA
*
51707294 CAAATCTCATCTCCCTGAAGTTGCAGTGGA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGA
51707324 CCAAATTGAC
Statistics
Matches: 212, Mismatches: 34, Indels: 43
0.73 0.12 0.15
Matches are distributed among these distances:
43 3 0.01
44 95 0.45
45 7 0.03
46 2 0.01
47 2 0.01
48 2 0.01
49 2 0.01
50 6 0.03
51 90 0.42
52 3 0.01
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.30
Consensus pattern (51 bp):
CAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTA
Found at i:51707096 original size:95 final size:95
Alignment explanation
Indices: 51706878--51707323 Score: 455
Period size: 95 Copynumber: 4.8 Consensus size: 95
51706868 TCATTGTGAA
* * * * * *
51706878 AAATCTTATCTCACTGAATTTGCAATGGAGCAGATT-AAAGCTACAAATCTTATATCCCT-AATG
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAACAGATTGAAA-CTACAAATCTTATTTCCCTGAA-G
* * * *
51706941 TTACATTGGAATAGATTGAA---AC--G--AC
64 TTGCAGTGGAACAGATTAAAGCTACAAGTTAC
* ** * * *
51706966 AAATCTTATCTCCTTGGAGTTGCAGTGAAACAGATTGAAGCTGCAAATCTTATTTCCCTGAAGTT
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAACAGATTGAAACTACAAATCTTATTTCCCTGAAGTT
* * *
51707031 ACAATAGAACAGATTAAAGCTACAAGTTAC
66 GCAGTGGAACAGATTAAAGCTACAAGTTAC
* *
51707061 AAATCTTATCTCCCTAAAGTTGCAGTGGAATAGATTGAAACTACAAATCTTATTTCCCTGAGGTT
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAACAGATTGAAACTACAAATCTTATTTCCCTGAAGTT
* *
51707126 GTAGTGGAATAGATTAAAGCTACAAGTTAC
66 GCAGTGGAACAGATTAAAGCTACAAGTTAC
* * * *
51707156 AAATCTTATCTCCCTAAAGTTGCAG-AGAAGCAGATTGAAACTATAAATCTTATTTCCTTGAGGT
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAA-CAGATTGAAACTACAAATCTTATTTCCCTGAAGT
51707220 TGCAGTGGAACAGATTAAAGCTACAAGTTAC
65 TGCAGTGGAACAGATTAAAGCTACAAGTTAC
* * * * * * * * *
51707251 AAATTTTATCTCCTTGAAGATGTAGTGGAGCAGATT-AAAGTTACAAATCTCATCTCCCTGAAGT
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAACAGATTGAAA-CTACAAATCTTATTTCCCTGAAGT
51707315 TGCAGTGGA
65 TGCAGTGGA
51707324 CCAAATTGAC
Statistics
Matches: 300, Mismatches: 46, Indels: 17
0.83 0.13 0.05
Matches are distributed among these distances:
88 63 0.21
89 4 0.01
91 2 0.01
93 1 0.00
94 6 0.02
95 222 0.74
96 2 0.01
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.30
Consensus pattern (95 bp):
AAATCTTATCTCCCTAAAGTTGCAGTGGAACAGATTGAAACTACAAATCTTATTTCCCTGAAGTT
GCAGTGGAACAGATTAAAGCTACAAGTTAC
Found at i:51708397 original size:24 final size:27
Alignment explanation
Indices: 51708347--51708397 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 27
51708337 AAAATGAAAT
51708347 AAAAAGAAGGATTGTTTTAAAATGATTC
1 AAAAAGAA-GATTGTTTTAAAATGATTC
51708375 AAAAAGAA-ATT-TTTTAAAA-GATT
1 AAAAAGAAGATTGTTTTAAAATGATT
51708398 TTTTACTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 4 0.17
25 8 0.35
26 3 0.13
28 8 0.35
ACGTcount: A:0.51, C:0.02, G:0.14, T:0.33
Consensus pattern (27 bp):
AAAAAGAAGATTGTTTTAAAATGATTC
Found at i:51709127 original size:3 final size:3
Alignment explanation
Indices: 51709115--51709157 Score: 52
Period size: 3 Copynumber: 14.7 Consensus size: 3
51709105 TGCGCTTTTA
* * *
51709115 TAT T-T TAT TAT TAT TTT TGT TAT TAT TAT TAT TAT CAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
51709158 CGCGTATTAG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
2 2 0.06
3 32 0.94
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:51710742 original size:60 final size:59
Alignment explanation
Indices: 51710642--51710795 Score: 184
Period size: 60 Copynumber: 2.6 Consensus size: 59
51710632 GAAGAACAGA
* ** * * *
51710642 CTTTGTGGAAAAACTCTGGATATAAAAGCCTTTATGGCGAGTACTGAGTGTAAATGATGC
1 CTTTGTGG-AAAACTCTTGATAGGAAAGCCTTTATAGCGAGTACTAAATGTAAATGATGC
* *
51710702 CTTTGTGGTAAATCTCTTGATAGGAAAGCCTTTGTAGCGAGTACTAAATGTAAATGATGC
1 CTTTGTGG-AAAACTCTTGATAGGAAAGCCTTTATAGCGAGTACTAAATGTAAATGATGC
* *
51710762 CTTTGTAGCAAACT-TTGGATAGGAAAGCCTTTAT
1 CTTTGTGGAAAACTCTT-GATAGGAAAGCCTTTAT
51710796 GAAAAAACTC
Statistics
Matches: 80, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
58 2 0.03
59 20 0.25
60 58 0.73
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.32
Consensus pattern (59 bp):
CTTTGTGGAAAACTCTTGATAGGAAAGCCTTTATAGCGAGTACTAAATGTAAATGATGC
Found at i:51710876 original size:61 final size:61
Alignment explanation
Indices: 51710801--51710968 Score: 255
Period size: 61 Copynumber: 2.8 Consensus size: 61
51710791 TTTATGAAAA
* * *
51710801 AACTCTAGACAGGAAAGCCTTTATGGTGAGTATTAGATGTAAAGGACAACTTTTGTGGCAC
1 AACTCTGGACAGGAAAGCCTTTATGGTGAGTATTGGATGTAAAGGACAACCTTTGTGGCAC
* * *
51710862 AACTCTGGACAGGAAAGTCTTTATAGTGAGTATTGGATGTAAAGGACAGCCTTTGTGGCAC
1 AACTCTGGACAGGAAAGCCTTTATGGTGAGTATTGGATGTAAAGGACAACCTTTGTGGCAC
* * *
51710923 AACTCTGGACAAGAAAGCCTTTGTGGCGAGTATTGGATGTAAAGGA
1 AACTCTGGACAGGAAAGCCTTTATGGTGAGTATTGGATGTAAAGGA
51710969 TGCCTTTGTG
Statistics
Matches: 96, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
61 96 1.00
ACGTcount: A:0.32, C:0.14, G:0.27, T:0.27
Consensus pattern (61 bp):
AACTCTGGACAGGAAAGCCTTTATGGTGAGTATTGGATGTAAAGGACAACCTTTGTGGCAC
Found at i:51713156 original size:20 final size:20
Alignment explanation
Indices: 51713127--51713164 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
51713117 TCAAATATAC
51713127 TGTTTAAAAAATTAAATTAT
1 TGTTTAAAAAATTAAATTAT
*
51713147 TGTTTTAAAAATTAAATT
1 TGTTTAAAAAATTAAATT
51713165 CTTTAAATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.47
Consensus pattern (20 bp):
TGTTTAAAAAATTAAATTAT
Found at i:51714644 original size:21 final size:21
Alignment explanation
Indices: 51714620--51714659 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
51714610 TGTATCTATC
*
51714620 AATTAAATATATTTTTTTAAA
1 AATTAAACATATTTTTTTAAA
*
51714641 AATTAAACGTATTTTTTTA
1 AATTAAACATATTTTTTTA
51714660 TTAAAGGTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.53
Consensus pattern (21 bp):
AATTAAACATATTTTTTTAAA
Found at i:51728584 original size:41 final size:41
Alignment explanation
Indices: 51728527--51728632 Score: 185
Period size: 41 Copynumber: 2.6 Consensus size: 41
51728517 AAAGAGATAA
* *
51728527 TTCAGACTTTACGTCTAGCAGGCTTGATGCCGGTGAAATGT
1 TTCAGACTTTACGTCTAGCAGGCTTGACGCCGGTGAAATAT
51728568 TTCAGACTTTACGTCTAGCAGGCTTGACGCCGGTGAAATAT
1 TTCAGACTTTACGTCTAGCAGGCTTGACGCCGGTGAAATAT
*
51728609 TTCGGACTTTACGTCTAGCAGGCT
1 TTCAGACTTTACGTCTAGCAGGCT
51728633 AATTGCCAGT
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 62 1.00
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.31
Consensus pattern (41 bp):
TTCAGACTTTACGTCTAGCAGGCTTGACGCCGGTGAAATAT
Found at i:51739360 original size:28 final size:28
Alignment explanation
Indices: 51739297--51739447 Score: 214
Period size: 28 Copynumber: 5.4 Consensus size: 28
51739287 ATATTAAGTC
*
51739297 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
51739324 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
51739352 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTATATAATCAAACT
*
51739380 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
51739408 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
51739437 CGCACACTTAG
1 CGCACACTTAG
51739448 CGCCAATCTC
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 22 0.19
28 75 0.66
29 16 0.14
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:51754916 original size:125 final size:125
Alignment explanation
Indices: 51754694--51754942 Score: 453
Period size: 125 Copynumber: 2.0 Consensus size: 125
51754684 TTTTAAGGGA
51754694 TCCTGAAAAAATAATTTCGAGTAGACGTTTCTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGA
1 TCCTGAAAAAATAATTTCGAGTAGACGTTTCTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGA
*
51754759 TGCATTGTCAGCAAAAGTACTGAAATCGCTCCCACATGGACACGCTTTTGCTATAGTAGC
66 TGCATTGTCAGCAAAAGTACTGAAATCGCTCCCACATGGACACGCTTTTGCTACAGTAGC
*
51754819 TCCTGAAAAAATAATTTCGAGTAGATGTTTCTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGA
1 TCCTGAAAAAATAATTTCGAGTAGACGTTTCTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGA
* * *
51754884 TGCTTTGTCAGCAAAAGTACTGAAATCGCTCCCACGTGGACGCGCTTTTGCTACAGTAG
66 TGCATTGTCAGCAAAAGTACTGAAATCGCTCCCACATGGACACGCTTTTGCTACAGTAG
51754943 TACATGTTTA
Statistics
Matches: 119, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
125 119 1.00
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.27
Consensus pattern (125 bp):
TCCTGAAAAAATAATTTCGAGTAGACGTTTCTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGA
TGCATTGTCAGCAAAAGTACTGAAATCGCTCCCACATGGACACGCTTTTGCTACAGTAGC
Found at i:51758583 original size:28 final size:28
Alignment explanation
Indices: 51758535--51758593 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 28
51758525 AAAAAAATTC
*
51758535 AAAAAAATAAAAATTTAAAAG-TTTTTT
1 AAAAAAATAAAAAATTAAAAGCTTTTTT
51758562 AAAAATAATTAAAAAATT-AAAGCTTTTTT
1 AAAAA-AA-TAAAAAATTAAAAGCTTTTTT
51758591 AAA
1 AAA
51758594 TAGGAATTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
27 5 0.18
28 6 0.21
29 17 0.61
ACGTcount: A:0.59, C:0.02, G:0.03, T:0.36
Consensus pattern (28 bp):
AAAAAAATAAAAAATTAAAAGCTTTTTT
Found at i:51758612 original size:11 final size:11
Alignment explanation
Indices: 51758598--51758642 Score: 74
Period size: 11 Copynumber: 4.2 Consensus size: 11
51758588 TTTAAATAGG
51758598 AATTTGAGAGA
1 AATTTGAGAGA
*
51758609 AATTTGAGAGG
1 AATTTGAGAGA
51758620 AATTTGAGAGA
1 AATTTGAGAGA
51758631 AA-TTGAGAGA
1 AATTTGAGAGA
51758641 AA
1 AA
51758643 GAATTAAGTT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
10 10 0.31
11 22 0.69
ACGTcount: A:0.47, C:0.00, G:0.29, T:0.24
Consensus pattern (11 bp):
AATTTGAGAGA
Found at i:51758638 original size:10 final size:10
Alignment explanation
Indices: 51758601--51758642 Score: 57
Period size: 10 Copynumber: 4.0 Consensus size: 10
51758591 AAATAGGAAT
51758601 TTGAGAGAAA
1 TTGAGAGAAA
*
51758611 TTTGAGAGGAAT
1 -TTGAGA-GAAA
51758623 TTGAGAGAAA
1 TTGAGAGAAA
51758633 TTGAGAGAAA
1 TTGAGAGAAA
51758643 GAATTAAGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
10 13 0.46
11 12 0.43
12 3 0.11
ACGTcount: A:0.45, C:0.00, G:0.31, T:0.24
Consensus pattern (10 bp):
TTGAGAGAAA
Found at i:51759691 original size:25 final size:25
Alignment explanation
Indices: 51759660--51759733 Score: 123
Period size: 25 Copynumber: 3.0 Consensus size: 25
51759650 AATTTAAATT
51759660 TTATATTAATATTAAATAAATATAA
1 TTATATTAATATTAAATAAATATAA
*
51759685 TTATATTAATTTTAAATAAATATAA
1 TTATATTAATATTAAATAAATATAA
*
51759710 TTATGTTAATATTAAATAAA-ATAA
1 TTATATTAATATTAAATAAATATAA
51759734 AAATCTCTCA
Statistics
Matches: 46, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
24 4 0.09
25 42 0.91
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.45
Consensus pattern (25 bp):
TTATATTAATATTAAATAAATATAA
Found at i:51760391 original size:79 final size:78
Alignment explanation
Indices: 51760296--51760555 Score: 296
Period size: 79 Copynumber: 3.3 Consensus size: 78
51760286 AAACCACAAA
* *
51760296 TTCTTTTCCCCCAATCAGTTCCCTCTCTCCCAAAAATCCCTAAGTTTTTTTCCCCAAACCCCTTT
1 TTCTTTTCCCCAAATCAATTCCCTCTCTCCC-AAAATCCCTAAGTTTTTTT-CCCAAACCCCTTT
51760361 CTTTTTTTCCCTAAT
64 CTTTTTTTCCCTAAT
* * * **
51760376 TTC-TTTCCCCAAATCAGTTCCCCCTCTCTCCGAAATCCCTAAGTTGTTTCTTTCCCGCACCCCT
1 TTCTTTTCCCCAAATCAATTCCCTCTCTC-CCAAAATCCCTAAG-T-TTT-TTTCCCAAACCCCT
*
51760440 TTC-TTTTTTCCCCAAT
62 TTCTTTTTTTCCCTAAT
** * *
51760456 TTCTTTTCCCCAAATCAATTCCCTCTC-CCCAAAATCCCTAA--TTTTTTCTGAAATCTCTTTCT
1 TTCTTTTCCCCAAATCAATTCCCTCTCTCCCAAAATCCCTAAGTTTTTTTCCCAAACCCCTTTCT
*
51760518 TTCTTTTTCCTAAAT
66 TT-TTTTCCCT-AAT
51760533 TTCTTTTCCCCAAATCAATTCCC
1 TTCTTTTCCCCAAATCAATTCCC
51760556 CCTCCTCGAT
Statistics
Matches: 155, Mismatches: 17, Indels: 19
0.81 0.09 0.10
Matches are distributed among these distances:
74 11 0.07
75 5 0.03
76 6 0.04
77 26 0.17
79 46 0.30
80 22 0.14
81 36 0.23
82 3 0.02
ACGTcount: A:0.19, C:0.37, G:0.03, T:0.42
Consensus pattern (78 bp):
TTCTTTTCCCCAAATCAATTCCCTCTCTCCCAAAATCCCTAAGTTTTTTTCCCAAACCCCTTTCT
TTTTTTCCCTAAT
Found at i:51761135 original size:13 final size:13
Alignment explanation
Indices: 51761119--51761149 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
51761109 ATGGAAGGAA
51761119 GAAATTTTATTAG
1 GAAATTTTATTAG
51761132 GAAATTTTATTAG
1 GAAATTTTATTAG
*
51761145 AAAAT
1 GAAAT
51761150 AATTAAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.45, C:0.00, G:0.13, T:0.42
Consensus pattern (13 bp):
GAAATTTTATTAG
Found at i:51761175 original size:12 final size:12
Alignment explanation
Indices: 51761158--51761183 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
51761148 ATAATTAAAA
51761158 TATTTTGTTTGT
1 TATTTTGTTTGT
51761170 TATTTTGTTTGT
1 TATTTTGTTTGT
51761182 TA
1 TA
51761184 AGGCTGAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.12, C:0.00, G:0.15, T:0.73
Consensus pattern (12 bp):
TATTTTGTTTGT
Found at i:51762923 original size:21 final size:22
Alignment explanation
Indices: 51762897--51762952 Score: 60
Period size: 24 Copynumber: 2.5 Consensus size: 22
51762887 TTTTTAATAA
*
51762897 TTTAATTT-AATTTAATTTTTT
1 TTTAATTTGAACTTAATTTTTT
*
51762918 TTTAATTTGGTACTTAATTTTTTT
1 TTTAATTT-GAACTTAA-TTTTTT
51762942 TTCTAATTTGA
1 TT-TAATTTGA
51762953 TATTTAAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
21 8 0.29
23 5 0.18
24 9 0.32
25 6 0.21
ACGTcount: A:0.25, C:0.04, G:0.05, T:0.66
Consensus pattern (22 bp):
TTTAATTTGAACTTAATTTTTT
Found at i:51762959 original size:25 final size:23
Alignment explanation
Indices: 51762897--51762959 Score: 76
Period size: 25 Copynumber: 2.7 Consensus size: 23
51762887 TTTTTAATAA
51762897 TTTAATTT-A-ATTTAATTTTTT
1 TTTAATTTGATATTTAATTTTTT
* *
51762918 TTTAATTTGGTACTTAATTTTTTT
1 TTTAATTTGATATTTAA-TTTTTT
51762942 TTCTAATTTGATATTTAA
1 TT-TAATTTGATATTTAA
51762960 ATTTATCAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
21 8 0.24
23 5 0.15
24 8 0.24
25 13 0.38
ACGTcount: A:0.27, C:0.03, G:0.05, T:0.65
Consensus pattern (23 bp):
TTTAATTTGATATTTAATTTTTT
Found at i:51763616 original size:35 final size:35
Alignment explanation
Indices: 51763577--51763646 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
51763567 TAAATGAATA
*
51763577 AAATTTAATGATTATCATAGCTTACATAAACATTT
1 AAATTTAATGATTATCATAACTTACATAAACATTT
*
51763612 AAATTTAATGATTATCATAACTTATATAAACATTT
1 AAATTTAATGATTATCATAACTTACATAAACATTT
51763647 GAAGAATATA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.44, C:0.10, G:0.04, T:0.41
Consensus pattern (35 bp):
AAATTTAATGATTATCATAACTTACATAAACATTT
Found at i:51776396 original size:415 final size:418
Alignment explanation
Indices: 51775623--51776451 Score: 1502
Period size: 415 Copynumber: 2.0 Consensus size: 418
51775613 ACAGTTAAGA
51775623 AAATTGCTCAACTTAAAGCGGAGACAACATCAAGAGAAGCAGAGGCTCAAAGAAAATATGAAGAA
1 AAATTGCTCAACTTAAAGCGGAGACAACATCAAGAGAAGCAGAGGCTCAAAGAAAATATGAAGAA
*
51775688 CTCCAGCTATAACCTAAAGCGGAGGCAGCAGCGAGGAAGCAAAAGCAACAAGAAAATATTATGAC
66 CTCCAGCTATAACCTAAAGCGGAGGCAACAGCGAGGAAGCAAAAGCAACAAGAAAATATTATGAC
* * *
51775753 GAACTCCAGCTACAGCTTCAGAATATGATGAAAATGTTTCAGCGGTCGCAGAATCTGCCATCTTA
131 AAACTCCAGCTACAGCTTCAGAATATGATGAAAATGTTTCAGCAGTCGCAGAATCCGCCATCTTA
* *
51775818 GTCTTTTGTTTTCTTATTGTGAGAATATCTTAACAATACAACTTTTGAATGTAATATATTTTGTT
196 GTCTTTTGTTTTCTTATTATGAGAATATCTTAACAATACAACTTCTGAATGTAATATATTTTGTT
*
51775883 ATTTCATTTATTAATTTATATCATATACATATTTCATTCATGATAGTATCATTTAGATTTGAAGT
261 ATTTCATTTATTAATTTAGATCATATACATATTTCATTCATGATAGTATCATTTAGATTTGAAGT
*
51775948 TTTTGATTGGATTTGATGTTACAGGAAATTATGTTTAAAATTTGGGTTCTATATGAATTAAAATG
326 TTTTGATTGGATTTGATGTTACAGGAAATTATGTTGAAAATTTGGGTTCTATATGAATTAAAATG
*
51776013 GATTGGTAAAATATGCTAAAATTAAAGC
391 GATTAGTAAAATATGCTAAAATTAAAGC
* *
51776041 AAATTGCTCAACTTAAAGTGGAGACAACATCAAGAGAAGCAGAGGCTTAAAGAAAATATGAAGAA
1 AAATTGCTCAACTTAAAGCGGAGACAACATCAAGAGAAGCAGAGGCTCAAAGAAAATATGAAGAA
51776106 CTCCAGCTATAACCTAAAGCGGAGGCAACAGCGAGGAAGCAAAAGCAACAAG-AAA-A-TATGAC
66 CTCCAGCTATAACCTAAAGCGGAGGCAACAGCGAGGAAGCAAAAGCAACAAGAAAATATTATGAC
*
51776168 AAACTCCAGCTACAGCTTCAGAATATGATGAAAATGTTTCAGCAGTCGTAGAATCCGCCATCTTA
131 AAACTCCAGCTACAGCTTCAGAATATGATGAAAATGTTTCAGCAGTCGCAGAATCCGCCATCTTA
*
51776233 GTCTTTTGTTTTCTTATTATGAGAATATTTTAACAATACAACTTCTGAATGTAATATATTTTGTT
196 GTCTTTTGTTTTCTTATTATGAGAATATCTTAACAATACAACTTCTGAATGTAATATATTTTGTT
*
51776298 ATTTCATTTATTAATTTAGATCATATACATATTTCATTCATGATAGTATTATTTAGATTTGAAGT
261 ATTTCATTTATTAATTTAGATCATATACATATTTCATTCATGATAGTATCATTTAGATTTGAAGT
*
51776363 TTTTGGTTGGATTTGATGTTACAGGAAATTATGTTGAAAATTTGGGTTCTATATGAATTAAAATG
326 TTTTGATTGGATTTGATGTTACAGGAAATTATGTTGAAAATTTGGGTTCTATATGAATTAAAATG
51776428 GATTAGTAAAATATGCTAAAATTA
391 GATTAGTAAAATATGCTAAAATTA
51776452 GTGGCATTTT
Statistics
Matches: 396, Mismatches: 15, Indels: 3
0.96 0.04 0.01
Matches are distributed among these distances:
415 278 0.70
416 1 0.00
417 3 0.01
418 114 0.29
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (418 bp):
AAATTGCTCAACTTAAAGCGGAGACAACATCAAGAGAAGCAGAGGCTCAAAGAAAATATGAAGAA
CTCCAGCTATAACCTAAAGCGGAGGCAACAGCGAGGAAGCAAAAGCAACAAGAAAATATTATGAC
AAACTCCAGCTACAGCTTCAGAATATGATGAAAATGTTTCAGCAGTCGCAGAATCCGCCATCTTA
GTCTTTTGTTTTCTTATTATGAGAATATCTTAACAATACAACTTCTGAATGTAATATATTTTGTT
ATTTCATTTATTAATTTAGATCATATACATATTTCATTCATGATAGTATCATTTAGATTTGAAGT
TTTTGATTGGATTTGATGTTACAGGAAATTATGTTGAAAATTTGGGTTCTATATGAATTAAAATG
GATTAGTAAAATATGCTAAAATTAAAGC
Found at i:51777082 original size:25 final size:24
Alignment explanation
Indices: 51777048--51777096 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 24
51777038 GTGGTGGATT
51777048 TTTATTTTATTTAATATTAATATA
1 TTTATTTTATTTAATATTAATATA
51777072 TTTATCTTTATTTAATATTAATATA
1 TTTAT-TTTATTTAATATTAATATA
51777097 AAATATGGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (24 bp):
TTTATTTTATTTAATATTAATATA
Found at i:51778073 original size:139 final size:139
Alignment explanation
Indices: 51777823--51778100 Score: 511
Period size: 139 Copynumber: 2.0 Consensus size: 139
51777813 TACTTTTGTT
51777823 GAAAAAAACTATCTGAGACAAACCTTTCGAATGCCGAGTCCGTGCCATAACCTTGTGGGTTATCT
1 GAAAAAAACTATCTGAGACAAACCTTTCGAATGCCGAGTCCGTGCCATAACCTTGTGGGTTATCT
*
51777888 GTAAAGAATGAAACTAAGGGGATGAGCTTAAGAATCACAATGTGGGTCTAAACACAAGAAAATCA
66 GTAAAGAAGGAAACTAAGGGGATGAGCTTAAGAATCACAATGTGGGTCTAAACACAAGAAAATCA
51777953 ATGCAAAAA
131 ATGCAAAAA
*
51777962 GAAAAAAACTATCTGAGACAAACCTTTCGAATGCCGAGTCCGTGCCATAACCTTGTGGGTTATTT
1 GAAAAAAACTATCTGAGACAAACCTTTCGAATGCCGAGTCCGTGCCATAACCTTGTGGGTTATCT
* * *
51778027 GTAAAGAAGGAAATTAAGGGTATGAGCTTAAGAATCTCAATGTGGGTCTAAACACAAGAAAATCA
66 GTAAAGAAGGAAACTAAGGGGATGAGCTTAAGAATCACAATGTGGGTCTAAACACAAGAAAATCA
51778092 ATGCAAAAA
131 ATGCAAAAA
51778101 AGTAGATATG
Statistics
Matches: 134, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
139 134 1.00
ACGTcount: A:0.40, C:0.17, G:0.21, T:0.23
Consensus pattern (139 bp):
GAAAAAAACTATCTGAGACAAACCTTTCGAATGCCGAGTCCGTGCCATAACCTTGTGGGTTATCT
GTAAAGAAGGAAACTAAGGGGATGAGCTTAAGAATCACAATGTGGGTCTAAACACAAGAAAATCA
ATGCAAAAA
Found at i:51782393 original size:38 final size:38
Alignment explanation
Indices: 51782298--51782393 Score: 131
Period size: 38 Copynumber: 2.5 Consensus size: 38
51782288 TTATTGATTG
**
51782298 CATGTTCAA-CATGCCTACTATTACTATTAAACTGAATA
1 CATGTT-AAGCATGCCTACTGCTACTATTAAACTGAATA
* *
51782336 CATGTTAAGCATGTCTACTGCTACTATTGAACTGAATA
1 CATGTTAAGCATGCCTACTGCTACTATTAAACTGAATA
*
51782374 CATGTTAAGTATGCCTACTG
1 CATGTTAAGCATGCCTACTG
51782394 TTTTTACATG
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
37 2 0.04
38 49 0.96
ACGTcount: A:0.32, C:0.20, G:0.14, T:0.34
Consensus pattern (38 bp):
CATGTTAAGCATGCCTACTGCTACTATTAAACTGAATA
Found at i:51784181 original size:269 final size:269
Alignment explanation
Indices: 51783695--51784229 Score: 698
Period size: 269 Copynumber: 2.0 Consensus size: 269
51783685 ACTTGAACTT
* *
51783695 TTTTGTTTGAAAACTGTAGATATACTTCAAAATTTAAACTTTCGAGAATACAATATGAACACTCA
1 TTTTGTTTGAAAACTATAGATATACTTCAAAACTTAAACTTTCGAGAATACAATATGAACACTCA
* * * *
51783760 AGGTAGATGTGGTAGGGGTAGGCCGCGTAGGGCTGCACCCGCTGAGCCACCCATTGTTCAAAGGG
66 AGGTAAACGTGGTAGGGGTAGGCCGCATAGGGCTGCACCCACTGAGCCACCCATTGTTCAAAGGG
* *
51783825 GAAACCAAATCCTTAAAGAGGAGTACGTGGAGAATTCTACCACCAATGGTGACAAAGGTTACGAG
131 AAAACCAAATCCCTAAAGAGGAGTACGTGGAGAATTCTACCACCAATGGTGACAAAGGTTACGAG
* * * *
51783890 AACAGAGATGATGCATTGTCGCAAACAATGCTGAGGG-TTCTGCAAAAGGTTGCTAGAGCCCAAG
196 AACAGAGACGATGCAATGTCGCAAACAATGCTG-GGGATTCTACAAAAGGTTGCTAGAGCCCAAA
51783954 CTAGATCGGG
260 CTAGATCGGG
* * *** **
51783964 TTTTGTTTGAAAACTATAGATATACTTTAGAACTTATTTTTTTTAGAATACAATATGAACACTCA
1 TTTTGTTTGAAAACTATAGATATACTTCAAAACTTAAACTTTCGAGAATACAATATGAACACTCA
* * * * *
51784029 AGGTAAACGTGGTAGGGGTAGGCTGCATAGGGTTGCACCCATTTAGCCACCCATTGTTTAGAA-G
66 AGGTAAACGTGGTAGGGGTAGGCCGCATAGGGCTGCACCCACTGAGCCACCCATTGTTCA-AAGG
* * ** *
51784093 GAAAACCCAATCCCTAATGAGGAGTACGTGGAGAATTCTACCGA-CAATGGTGGTAGAGGTTACG
130 GAAAACCAAATCCCTAAAGAGGAGTACGTGGAGAATTCTACC-ACCAATGGTGACAAAGGTTACG
* * * * * * *
51784157 AGAACGGAGACGATGCAATGTCGCAAGCAATGTTGGGGATTTTACAAAGGGTTGTTGGAGCCCAA
194 AGAACAGAGACGATGCAATGTCGCAAACAATGCTGGGGATTCTACAAAAGGTTGCTAGAGCCCAA
51784222 ACTAGATC
259 ACTAGATC
51784230 AGGGAGCCAT
Statistics
Matches: 227, Mismatches: 36, Indels: 6
0.84 0.13 0.02
Matches are distributed among these distances:
268 3 0.01
269 221 0.97
270 3 0.01
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.25
Consensus pattern (269 bp):
TTTTGTTTGAAAACTATAGATATACTTCAAAACTTAAACTTTCGAGAATACAATATGAACACTCA
AGGTAAACGTGGTAGGGGTAGGCCGCATAGGGCTGCACCCACTGAGCCACCCATTGTTCAAAGGG
AAAACCAAATCCCTAAAGAGGAGTACGTGGAGAATTCTACCACCAATGGTGACAAAGGTTACGAG
AACAGAGACGATGCAATGTCGCAAACAATGCTGGGGATTCTACAAAAGGTTGCTAGAGCCCAAAC
TAGATCGGG
Found at i:51784892 original size:26 final size:25
Alignment explanation
Indices: 51784863--51784914 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
51784853 AGTACATGTA
*
51784863 AATTTTGTTATTATATAAAGAAATAT
1 AATTTTATTATTATAT-AAGAAATAT
* *
51784889 AATTTTATTTTTATATAATAAATAT
1 AATTTTATTATTATATAAGAAATAT
51784914 A
1 A
51784915 TAAATTTATT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 9 0.39
26 14 0.61
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (25 bp):
AATTTTATTATTATATAAGAAATAT
Found at i:51784922 original size:27 final size:26
Alignment explanation
Indices: 51784873--51784924 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
51784863 AATTTTGTTA
*
51784873 TTATATAAAGAAATATAATTTTATTT
1 TTATATAAAGAAATATAAATTTATTT
51784899 TTATATAATA-AATATATAAATTTATT
1 TTATATAA-AGAA-ATATAAATTTATT
51784925 ACCATAAACA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (26 bp):
TTATATAAAGAAATATAAATTTATTT
Found at i:51787069 original size:61 final size:62
Alignment explanation
Indices: 51787004--51787130 Score: 159
Period size: 61 Copynumber: 2.1 Consensus size: 62
51786994 TCTTTTTTTT
* * * * * *
51787004 TTGAAACTTTT-AGAATTATAACCAAATTTATAAATTTTGTAAATGTTGAGGGTTAAATTTA
1 TTGAAACTTTTAAGAACTAGAACCAAAATGATAAATTTTGTAAATATTGAGGGCTAAATTTA
* * *
51787065 TTG-AATTTTTAAGAACTAGAACTAAAATGATAAATTTTGTAAATATTGAGGGCTAAATTTG
1 TTGAAACTTTTAAGAACTAGAACCAAAATGATAAATTTTGTAAATATTGAGGGCTAAATTTA
51787126 TTGAA
1 TTGAA
51787131 TTTTTTAAAT
Statistics
Matches: 55, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
60 6 0.11
61 48 0.87
62 1 0.02
ACGTcount: A:0.40, C:0.05, G:0.15, T:0.40
Consensus pattern (62 bp):
TTGAAACTTTTAAGAACTAGAACCAAAATGATAAATTTTGTAAATATTGAGGGCTAAATTTA
Found at i:51790413 original size:12 final size:12
Alignment explanation
Indices: 51790393--51790426 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
51790383 TTATTTAGAT
*
51790393 AAAAGGAAAAAA
1 AAAAAGAAAAAA
51790405 AAAAAGAAAAAA
1 AAAAAGAAAAAA
51790417 AAGAAAGAAA
1 AA-AAAGAAA
51790427 GCTTTCGATG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 13 0.65
13 7 0.35
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (12 bp):
AAAAAGAAAAAA
Found at i:51790415 original size:13 final size:13
Alignment explanation
Indices: 51790393--51790426 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
51790383 TTATTTAGAT
*
51790393 AAAAGGAAAAAAA
1 AAAAGAAAAAAAA
51790406 AAAAGAAAAAAAA
1 AAAAGAAAAAAAA
*
51790419 GAAAGAAA
1 AAAAGAAA
51790427 GCTTTCGATG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (13 bp):
AAAAGAAAAAAAA
Found at i:51793956 original size:57 final size:57
Alignment explanation
Indices: 51793862--51793969 Score: 180
Period size: 57 Copynumber: 1.9 Consensus size: 57
51793852 TTGTTCCAAC
* *
51793862 GAACATGACTATCTCTTGCTATCTCATGGACAGTTTGAGTTAATGTTAAAAGCTGAG
1 GAACATGACTATCTCTTGCTATCTCATGGACAATTTGAATTAATGTTAAAAGCTGAG
* *
51793919 GAACATGACTATCTCTTGCTATTTCATGGATAATTTGAATTAATGTTAAAA
1 GAACATGACTATCTCTTGCTATCTCATGGACAATTTGAATTAATGTTAAAA
51793970 TAGTGTATGT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
57 47 1.00
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.36
Consensus pattern (57 bp):
GAACATGACTATCTCTTGCTATCTCATGGACAATTTGAATTAATGTTAAAAGCTGAG
Found at i:51794631 original size:18 final size:18
Alignment explanation
Indices: 51794608--51794646 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
51794598 CCAAATGAAA
51794608 CTTAAACTTCATTTCAAG
1 CTTAAACTTCATTTCAAG
51794626 CTTAAACTTCATTTCAAG
1 CTTAAACTTCATTTCAAG
51794644 CTT
1 CTT
51794647 TCGGAACACC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.31, C:0.23, G:0.05, T:0.41
Consensus pattern (18 bp):
CTTAAACTTCATTTCAAG
Found at i:51794752 original size:22 final size:20
Alignment explanation
Indices: 51794709--51794767 Score: 64
Period size: 22 Copynumber: 2.8 Consensus size: 20
51794699 TCAAAGAGAG
*
51794709 AAAAATAAGTTTTTAATCTTTT
1 AAAAATAA-TTTTT-ATATTTT
*
51794731 AAATATTATATTTTTATATTTT
1 AAA-AATA-ATTTTTATATTTT
51794753 AAAAATAATTTTTAT
1 AAAAATAATTTTTAT
51794768 TGTAATTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
20 8 0.25
21 3 0.09
22 12 0.38
23 8 0.25
24 1 0.03
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (20 bp):
AAAAATAATTTTTATATTTT
Found at i:51795033 original size:27 final size:26
Alignment explanation
Indices: 51795003--51795067 Score: 67
Period size: 28 Copynumber: 2.4 Consensus size: 26
51794993 TCCATAATCC
*
51795003 AAAATAAAAAACCAAACCCTAAAATTTA
1 AAAATAAAAAACCAAA-CCTAAAA-TGA
* * **
51795031 AAATTCAAAATTCAAACCTAAAATGA
1 AAAATAAAAAACCAAACCTAAAATGA
51795057 AAAATAAAAAA
1 AAAATAAAAAA
51795068 TAAAAAATAA
Statistics
Matches: 29, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
26 10 0.34
27 7 0.24
28 12 0.41
ACGTcount: A:0.66, C:0.14, G:0.02, T:0.18
Consensus pattern (26 bp):
AAAATAAAAAACCAAACCTAAAATGA
Found at i:51795068 original size:27 final size:28
Alignment explanation
Indices: 51795003--51795068 Score: 73
Period size: 27 Copynumber: 2.4 Consensus size: 28
51794993 TCCATAATCC
**
51795003 AAAATAAAAAA-CCAAACCCTAAAATTT
1 AAAATAAAAAATCCAAACCCTAAAATGA
** *
51795030 AAAATTCAAAATTCAAA-CCTAAAATGA
1 AAAATAAAAAATCCAAACCCTAAAATGA
51795057 AAAATAAAAAAT
1 AAAATAAAAAAT
51795069 AAAAAATAAC
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
27 27 0.87
28 4 0.13
ACGTcount: A:0.65, C:0.14, G:0.02, T:0.20
Consensus pattern (28 bp):
AAAATAAAAAATCCAAACCCTAAAATGA
Found at i:51795740 original size:15 final size:16
Alignment explanation
Indices: 51795722--51795757 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
51795712 TTTCGAGAAT
51795722 TTTTAAATTTATAT-A
1 TTTTAAATTTATATAA
*
51795737 TTTTAAATTTTTATAA
1 TTTTAAATTTATATAA
51795753 TTTTA
1 TTTTA
51795758 TTTTTAGATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 13 0.68
16 6 0.32
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (16 bp):
TTTTAAATTTATATAA
Found at i:51803267 original size:46 final size:44
Alignment explanation
Indices: 51803160--51803439 Score: 299
Period size: 46 Copynumber: 6.6 Consensus size: 44
51803150 TACGTATGAT
*
51803160 CACTTATCAC-TTGTC-CTTGATCAGATAAGTATAGCTAGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTA-GCTAC
* * *
51803203 CACTTATCAGTTTTTCACTTGATCAGATAAGTGTAGCTAAGGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT-A-GCTAC
51803249 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT--AGCTAC
51803295 CACTTATCACTTTGTCACTTGATCAGATAA--GTA--TAG----
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAGCTAC
*
51803331 CACTTATCACTTTTTCACTTGATCAGATAA--GTA--TAG----
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAGCTAC
*
51803367 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT--AGCTAC
* *
51803413 CACTTATCACTTTATCTCTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
51803440 AGTACTCAAA
Statistics
Matches: 213, Mismatches: 10, Indels: 25
0.86 0.04 0.10
Matches are distributed among these distances:
36 65 0.31
38 3 0.01
40 3 0.01
42 3 0.01
43 9 0.04
44 7 0.03
45 20 0.09
46 101 0.47
47 2 0.01
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.36
Consensus pattern (44 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAGCTAC
Found at i:51803335 original size:36 final size:36
Alignment explanation
Indices: 51803295--51803403 Score: 200
Period size: 36 Copynumber: 3.0 Consensus size: 36
51803285 CTAAAGCTAC
*
51803295 CACTTATCACTTTGTCACTTGATCAGATAAGTATAG
1 CACTTATCACTTTTTCACTTGATCAGATAAGTATAG
51803331 CACTTATCACTTTTTCACTTGATCAGATAAGTATAG
1 CACTTATCACTTTTTCACTTGATCAGATAAGTATAG
*
51803367 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAG
1 CACTTATCACTTTTTCACTTGATCAGATAAGTATAG
51803403 C
1 C
51803404 TAAAGCTACC
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 71 1.00
ACGTcount: A:0.29, C:0.20, G:0.13, T:0.38
Consensus pattern (36 bp):
CACTTATCACTTTTTCACTTGATCAGATAAGTATAG
Found at i:51809115 original size:33 final size:32
Alignment explanation
Indices: 51809058--51809215 Score: 91
Period size: 33 Copynumber: 4.8 Consensus size: 32
51809048 CAATGTTTAT
* * *
51809058 ATGTAAAACCATAGCTAGGCTATGACATTCTA
1 ATGTAAGACCATAACTGGGCTATGACATTCTA
* * *
51809090 ATGATAAGACCATAACTGGGTTATGACACTATGA
1 ATG-TAAGACCATAACTGGGCTATGACATTCT-A
* * *** * * * *
51809124 ACGTAATACCATGGTTGGACCATGGCAGTGTTTA
1 ATGTAAGACCATAACTGGGCTATGACA-T-TCTA
* * *
51809158 TATGTAAGACCATAGCTGGGCTATGGCATTCTG
1 -ATGTAAGACCATAACTGGGCTATGACATTCTA
*
51809191 ATGATAAGACCATAACTGGGTTATG
1 ATG-TAAGACCATAACTGGGCTATG
51809216 GCACTACGAA
Statistics
Matches: 93, Mismatches: 27, Indels: 11
0.71 0.21 0.08
Matches are distributed among these distances:
32 6 0.06
33 59 0.63
34 5 0.05
35 23 0.25
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.28
Consensus pattern (32 bp):
ATGTAAGACCATAACTGGGCTATGACATTCTA
Found at i:51809127 original size:101 final size:101
Alignment explanation
Indices: 51808991--51809230 Score: 381
Period size: 101 Copynumber: 2.4 Consensus size: 101
51808981 TGAACTGACG
*
51808991 GATAAGACCATAATTGGGTTATGGCACTATGAACGTAAGACCATGGTTGGACCATGACAATGTTT
1 GATAAGACCATAACTGGGTTATGGCACTATGAACGTAAGACCATGGTTGGACCATGACAATGTTT
51809056 ATATGTAAAACCATAGCTAGGCTATGACATTCTAAT
66 ATATGTAAAACCATAGCTAGGCTATGACATTCTAAT
* * * *
51809092 GATAAGACCATAACTGGGTTATGACACTATGAACGTAATACCATGGTTGGACCATGGCAGTGTTT
1 GATAAGACCATAACTGGGTTATGGCACTATGAACGTAAGACCATGGTTGGACCATGACAATGTTT
* * * *
51809157 ATATGTAAGACCATAGCTGGGCTATGGCATTCTGAT
66 ATATGTAAAACCATAGCTAGGCTATGACATTCTAAT
* *
51809193 GATAAGACCATAACTGGGTTATGGCACTACGAATGTAA
1 GATAAGACCATAACTGGGTTATGGCACTATGAACGTAA
51809231 AGGATGAATT
Statistics
Matches: 127, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
101 127 1.00
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28
Consensus pattern (101 bp):
GATAAGACCATAACTGGGTTATGGCACTATGAACGTAAGACCATGGTTGGACCATGACAATGTTT
ATATGTAAAACCATAGCTAGGCTATGACATTCTAAT
Found at i:51812432 original size:21 final size:20
Alignment explanation
Indices: 51812408--51812454 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
51812398 TATAGGTATT
51812408 AATTTATTAATTATAAA-TAAA
1 AATTTATTAA--ATAAATTAAA
*
51812429 AATTAATTAAATAAATTAAA
1 AATTTATTAAATAAATTAAA
*
51812449 CATTTA
1 AATTTA
51812455 ATGTACCTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
19 5 0.23
20 8 0.36
21 9 0.41
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (20 bp):
AATTTATTAAATAAATTAAA
Found at i:51819554 original size:64 final size:64
Alignment explanation
Indices: 51819453--51819583 Score: 253
Period size: 64 Copynumber: 2.0 Consensus size: 64
51819443 CGGTAGACAC
51819453 TTTAGTTCCATTCTTGTTCATCTTAAAACAGTATGCAATGTTAATGATGTGGACCGTCCACTAA
1 TTTAGTTCCATTCTTGTTCATCTTAAAACAGTATGCAATGTTAATGATGTGGACCGTCCACTAA
*
51819517 TTTAGTTCCATTCTTGTTCATCTTAAAACAGTATGCAATGTTAATGATGTGGACTGTCCACTAA
1 TTTAGTTCCATTCTTGTTCATCTTAAAACAGTATGCAATGTTAATGATGTGGACCGTCCACTAA
51819581 TTT
1 TTT
51819584 GGCATATTGC
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
64 66 1.00
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.40
Consensus pattern (64 bp):
TTTAGTTCCATTCTTGTTCATCTTAAAACAGTATGCAATGTTAATGATGTGGACCGTCCACTAA
Found at i:51822712 original size:11 final size:11
Alignment explanation
Indices: 51822696--51822720 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
51822686 TATGGAGTCT
51822696 TATGTATTGGG
1 TATGTATTGGG
51822707 TATGTATTGGG
1 TATGTATTGGG
51822718 TAT
1 TAT
51822721 AACTCCCCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.20, C:0.00, G:0.32, T:0.48
Consensus pattern (11 bp):
TATGTATTGGG
Found at i:51827079 original size:21 final size:22
Alignment explanation
Indices: 51827041--51827101 Score: 63
Period size: 21 Copynumber: 2.9 Consensus size: 22
51827031 TGTGTTGGAG
* *
51827041 GAGGCACATGACCATGTG-GCT
1 GAGGAACATGACCGTGTGAGCT
*
51827062 GAGGAACATGCCCGTGTGAGCT
1 GAGGAACATGACCGTGTGAGCT
* *
51827084 -AGGGACATGGCCGTGTGA
1 GAGGAACATGACCGTGTGA
51827102 ATAGGCCATG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
21 31 0.91
22 3 0.09
ACGTcount: A:0.23, C:0.21, G:0.38, T:0.18
Consensus pattern (22 bp):
GAGGAACATGACCGTGTGAGCT
Found at i:51832934 original size:25 final size:25
Alignment explanation
Indices: 51832902--51832957 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 25
51832892 AAATACTAAT
* *
51832902 TTTTAACGGTATAGATTTATAAAAA
1 TTTTAACGGCATAAATTTATAAAAA
*
51832927 TTTTAACGGCATAAATTTATAAAAT
1 TTTTAACGGCATAAATTTATAAAAA
51832952 TTTTAA
1 TTTTAA
51832958 TAGAAAGACC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.43, C:0.05, G:0.09, T:0.43
Consensus pattern (25 bp):
TTTTAACGGCATAAATTTATAAAAA
Found at i:51834583 original size:36 final size:35
Alignment explanation
Indices: 51834501--51834588 Score: 88
Period size: 36 Copynumber: 2.5 Consensus size: 35
51834491 GAAAATGAAT
*
51834501 AAAATTAT-AAACATACAAAAAATATACATGCATGTT
1 AAAATTATGAAA-ATA-AAAAAATATACATGCATGTG
* * * * *
51834537 TAAATCATGAAATATAAAAATATATATATGTATGTG
1 AAAATTATGAAA-ATAAAAAAATATACATGCATGTG
51834573 AAAATTATGAAAATAA
1 AAAATTATGAAAATAA
51834589 GATAAAAAAA
Statistics
Matches: 42, Mismatches: 9, Indels: 3
0.78 0.17 0.06
Matches are distributed among these distances:
35 4 0.10
36 32 0.76
37 6 0.14
ACGTcount: A:0.56, C:0.06, G:0.08, T:0.31
Consensus pattern (35 bp):
AAAATTATGAAAATAAAAAAATATACATGCATGTG
Found at i:51834712 original size:6 final size:6
Alignment explanation
Indices: 51834696--51834739 Score: 54
Period size: 6 Copynumber: 7.5 Consensus size: 6
51834686 ATAATAATAT
* * *
51834696 ATAAC- ATAACA ATAACA ATAAAA ATAAAA ATAAAA ATAACA ATA
1 ATAACA ATAACA ATAACA ATAACA ATAACA ATAACA ATAACA ATA
51834740 TTAATAAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
5 5 0.14
6 31 0.86
ACGTcount: A:0.73, C:0.09, G:0.00, T:0.18
Consensus pattern (6 bp):
ATAACA
Found at i:51834716 original size:12 final size:12
Alignment explanation
Indices: 51834696--51834752 Score: 64
Period size: 12 Copynumber: 4.9 Consensus size: 12
51834686 ATAATAATAT
*
51834696 ATAAC-ATAACA
1 ATAACAATAAAA
51834707 ATAACAATAAAA
1 ATAACAATAAAA
*
51834719 ATAAAAATAAAA
1 ATAACAATAAAA
**
51834731 ATAACAATATTA
1 ATAACAATAAAA
51834743 ATAA-AATAAA
1 ATAACAATAAA
51834753 CTAAAGAAAC
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
11 9 0.24
12 29 0.76
ACGTcount: A:0.72, C:0.07, G:0.00, T:0.21
Consensus pattern (12 bp):
ATAACAATAAAA
Found at i:51835531 original size:44 final size:43
Alignment explanation
Indices: 51835466--51835550 Score: 134
Period size: 44 Copynumber: 2.0 Consensus size: 43
51835456 CCCAATCCCT
*
51835466 CTTATAGTTTTAACCTACTCCACCGCAACTTCAGGGAGATAGG
1 CTTATAGCTTTAACCTACTCCACCGCAACTTCAGGGAGATAGG
* *
51835509 CTTATTAGCTTTAATCTGCTCCACCGCAACTTCAGGGAGATA
1 CTTA-TAGCTTTAACCTACTCCACCGCAACTTCAGGGAGATA
51835551 AGATTCGCCA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
43 4 0.11
44 34 0.89
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (43 bp):
CTTATAGCTTTAACCTACTCCACCGCAACTTCAGGGAGATAGG
Found at i:51835697 original size:50 final size:50
Alignment explanation
Indices: 51835594--51835699 Score: 133
Period size: 50 Copynumber: 2.1 Consensus size: 50
51835584 GTTGGGAAAC
* *
51835594 AAGATTCGCCGTCGTAGCTTCAATCCGTTCCACTACACCGCCAGAGAAGT
1 AAGATTCGCCGTCGTAGCTTCAATCCGTTCCACTACAACGCCAAAGAAGT
* * * * *
51835644 AAGATTCGCCGTTGTGGCTTCAATCTGTTCCACTATAATGCCAAAG-AGAT
1 AAGATTCGCCGTCGTAGCTTCAATCCGTTCCACTACAACGCCAAAGAAG-T
51835694 AAGATT
1 AAGATT
51835700 TGCTGCCCAT
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
49 2 0.04
50 46 0.96
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.26
Consensus pattern (50 bp):
AAGATTCGCCGTCGTAGCTTCAATCCGTTCCACTACAACGCCAAAGAAGT
Found at i:51848197 original size:3 final size:3
Alignment explanation
Indices: 51848189--51848254 Score: 64
Period size: 3 Copynumber: 22.3 Consensus size: 3
51848179 ATATGTAGAT
* * *
51848189 ATA ATA ATA TATA AT- ATA ACA ATA ACA ATA ATA ATA AAA ATA ATA
1 ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
51848234 ATA ACA ATA TTA ATA A-A ATA A
1 ATA ATA ATA ATA ATA ATA ATA A
51848255 ACTAAAGAAA
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
2 4 0.08
3 43 0.86
4 3 0.06
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:51848231 original size:24 final size:25
Alignment explanation
Indices: 51848189--51848253 Score: 87
Period size: 24 Copynumber: 2.6 Consensus size: 25
51848179 ATATGTAGAT
51848189 ATAATAATATATAATATAACAATAACA
1 ATAATAATA-A-AATATAACAATAACA
*
51848216 ATAATAATAAAA-ATAATAATAACA
1 ATAATAATAAAATATAACAATAACA
*
51848240 ATATTAATAAAATA
1 ATAATAATAAAATA
51848254 AACTAAAGAA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
24 22 0.63
25 3 0.09
26 1 0.03
27 9 0.26
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.29
Consensus pattern (25 bp):
ATAATAATAAAATATAACAATAACA
Found at i:51849889 original size:24 final size:24
Alignment explanation
Indices: 51849857--51849905 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
51849847 CTGCCAATTG
*
51849857 TTAGATTCCCGTTGTTCGTGATAT
1 TTAGATTCCCGTCGTTCGTGATAT
51849881 TTAGATTCCCGTCGTTCGTGATAT
1 TTAGATTCCCGTCGTTCGTGATAT
51849905 T
1 T
51849906 CCAGTGTACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.16, C:0.18, G:0.20, T:0.45
Consensus pattern (24 bp):
TTAGATTCCCGTCGTTCGTGATAT
Found at i:51851816 original size:39 final size:39
Alignment explanation
Indices: 51851679--51851862 Score: 169
Period size: 40 Copynumber: 4.6 Consensus size: 39
51851669 GCTACTCGTT
* * *
51851679 CAAATGCCTTCGGGACATAGCCTGG-TTATAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGAAT-TAGTAACTCGCA
* * *
51851719 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGAATTAGTAACTCGCA
* *
51851759 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCT-GCA
1 CAAATGCCTTCGGACTTAGCCCGGAATTAGTAACTCGCA
* * * *
51851797 CAAATGCCTTCGGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCA
51851838 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTC-GGACTTAGCCCGGA
51851863 CATCATTCAA
Statistics
Matches: 122, Mismatches: 15, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
38 18 0.15
39 33 0.27
40 59 0.48
41 12 0.10
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:51861110 original size:38 final size:39
Alignment explanation
Indices: 51860991--51861169 Score: 170
Period size: 40 Copynumber: 4.6 Consensus size: 39
51860981 GCTACTCGTT
*
51860991 CAAATGCCTTCGGGACATAGCCGG-TTATAGTAAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCGGATT-TAGT-AACTCGCA
* * *
51861031 CAATTGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTT-AGCCGGATTTAGTAACTCGCA
* * *
51861071 CAAATGCCTTCGGG-CTTAGCCGGAATTAGTATCTTGCA
1 CAAATGCCTTCGGGACTTAGCCGGATTTAGTAACTCGCA
* * * *
51861109 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAG-CCGGATTTAGTAAC-TCGCA
51861150 CAAA-GCCTT-GGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
51861170 CGGACATCAT
Statistics
Matches: 116, Mismatches: 16, Indels: 16
0.78 0.11 0.11
Matches are distributed among these distances:
37 2 0.02
38 30 0.26
39 13 0.11
40 52 0.45
41 17 0.15
42 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCGGATTTAGTAACTCGCA
Found at i:51861173 original size:39 final size:38
Alignment explanation
Indices: 51860972--51861173 Score: 144
Period size: 40 Copynumber: 5.1 Consensus size: 38
51860962 TCGAATTTAA
* ** *
51860972 CCGGATATAGCTACTCGTTCAAATGCCTTCGGGACATAG-
1 CCGGATATAG-TACTTGCACAAATGCCTT-GGGACTTAGC
* * * *
51861011 CCGGTTATAGTAAACTCGCACAATTGCCTTTGGGACTTAAC
1 CCGGATATAGT--ACTTGCACAAATGCC-TTGGGACTTAGC
* *
51861052 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAG-
1 CCGGATATAGT-ACTTGCACAAATGCCTT-GGGACTTAGC
* *
51861090 CCGGA-ATTAGTATCTTGCACAAATGCCTTCGGATCTTAGT
1 CCGGATA-TAGTA-CTTGCACAAATGCCTTGGGA-CTTAGC
*
51861130 CCGGATATGGTCACTTAGCACAAA-GCCTTGGGACTTAGC
1 CCGGATATAGT-ACTT-GCACAAATGCCTTGGGACTTAGC
51861169 CCGGA
1 CCGGA
51861174 CATCATTCAA
Statistics
Matches: 134, Mismatches: 16, Indels: 26
0.76 0.09 0.15
Matches are distributed among these distances:
37 3 0.02
38 25 0.19
39 30 0.22
40 56 0.42
41 20 0.15
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (38 bp):
CCGGATATAGTACTTGCACAAATGCCTTGGGACTTAGC
Found at i:51876371 original size:28 final size:28
Alignment explanation
Indices: 51876308--51876458 Score: 214
Period size: 28 Copynumber: 5.4 Consensus size: 28
51876298 ATATTAAGTC
*
51876308 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
51876335 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
51876363 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTATATAATCAAACT
*
51876391 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
51876419 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
51876448 CGCACACTTAG
1 CGCACACTTAG
51876459 CGCCAATCTC
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 22 0.19
28 75 0.66
29 16 0.14
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:51883409 original size:15 final size:16
Alignment explanation
Indices: 51883380--51883409 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
51883370 CAAACATGCT
51883380 TTAACACATTATCAAA
1 TTAACACATTATCAAA
51883396 TTAACACA-TATCAA
1 TTAACACATTATCAA
51883410 CAAGCCACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (16 bp):
TTAACACATTATCAAA
Found at i:51884526 original size:25 final size:25
Alignment explanation
Indices: 51884489--51884557 Score: 120
Period size: 25 Copynumber: 2.8 Consensus size: 25
51884479 TCCTATACAT
*
51884489 TGCTCACATGAGCTGTGAATCAGAA
1 TGCTCACACGAGCTGTGAATCAGAA
*
51884514 TGCTCACACGAGCTGTGAATTAGAA
1 TGCTCACACGAGCTGTGAATCAGAA
51884539 TGCTCACACGAGCTGTGAA
1 TGCTCACACGAGCTGTGAA
51884558 AATGGGCCTG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.30, C:0.22, G:0.25, T:0.23
Consensus pattern (25 bp):
TGCTCACACGAGCTGTGAATCAGAA
Found at i:51886110 original size:28 final size:28
Alignment explanation
Indices: 51886028--51886112 Score: 91
Period size: 28 Copynumber: 3.0 Consensus size: 28
51886018 GAGCTGTTAC
**
51886028 AAAGCCTTTGTGGCAAACCTCTACAAAAG
1 AAAGCCTTTGTGGCAAA-CTCTAGTAAAG
* * * *
51886057 AAAGCCTTTATGACGAAC-CTTTGTAAAG
1 AAAGCCTTTGTGGCAAACTC-TAGTAAAG
51886085 AAAGCCTTTGTGGCAAACTCTAGTAAAG
1 AAAGCCTTTGTGGCAAACTCTAGTAAAG
51886113 GAATCCTCGT
Statistics
Matches: 44, Mismatches: 10, Indels: 5
0.75 0.17 0.08
Matches are distributed among these distances:
27 1 0.02
28 28 0.64
29 15 0.34
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.25
Consensus pattern (28 bp):
AAAGCCTTTGTGGCAAACTCTAGTAAAG
Found at i:51887399 original size:8 final size:8
Alignment explanation
Indices: 51887388--51887415 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
51887378 TACTTACTCT
51887388 CTTACTTG
1 CTTACTTG
51887396 CTTACTTG
1 CTTACTTG
51887404 CTTACTTG
1 CTTACTTG
51887412 CTTA
1 CTTA
51887416 ATTAAATAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.14, C:0.25, G:0.11, T:0.50
Consensus pattern (8 bp):
CTTACTTG
Found at i:51900719 original size:16 final size:16
Alignment explanation
Indices: 51900698--51900731 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
51900688 AATTATTCTA
51900698 GGGCTTTAACTAAATT
1 GGGCTTTAACTAAATT
*
51900714 GGGCTTTAATTAAATT
1 GGGCTTTAACTAAATT
51900730 GG
1 GG
51900732 AAACCATTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.29, C:0.09, G:0.24, T:0.38
Consensus pattern (16 bp):
GGGCTTTAACTAAATT
Found at i:51905146 original size:29 final size:29
Alignment explanation
Indices: 51905063--51905156 Score: 73
Period size: 29 Copynumber: 3.2 Consensus size: 29
51905053 TCATTAGGGT
* * *
51905063 TTATC-AGACACTATGTGCCAGTGATTACAG
1 TTATCAAG-CACTTTGTGCCGGTG-TTACAA
* * * * *
51905093 TTATCATGTACTTTGTACTGATGTTACAA
1 TTATCAAGCACTTTGTGCCGGTGTTACAA
* *
51905122 TTATCAAGCACTTTGTGCCGGTGTTATAT
1 TTATCAAGCACTTTGTGCCGGTGTTACAA
51905151 TTATCA
1 TTATCA
51905157 GGTACCATTT
Statistics
Matches: 48, Mismatches: 15, Indels: 3
0.73 0.23 0.05
Matches are distributed among these distances:
29 33 0.69
30 14 0.29
31 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.39
Consensus pattern (29 bp):
TTATCAAGCACTTTGTGCCGGTGTTACAA
Done.