Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67659327
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 461372 characters in sequence are not A, C, G, or T
File 176 of 216
Found at i:55105648 original size:107 final size:107
Alignment explanation
Indices: 55105390--55105653 Score: 353
Period size: 107 Copynumber: 2.5 Consensus size: 107
55105380 TAATCATATT
* * *
55105390 TAAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATT
1 TAAA-ATAATAATTATGAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATC
* * *
55105455 AATATTCTTATATGAATTTACTCAAATCATAATATAGATAATT
65 AATATTCTTATATGAATTTACTAAAATCATAATATAAATAATA
* * *
55105498 TAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCA
1 TAAAATAATAATTATGAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCA
*
55105563 ATATTCTTATATGAATTTACTAAAATCATAATATATAATACTA
66 ATATTCTTATATGAATTTACTAAAATCATAATATA-AATAATA
55105606 TAAAAT-ATAATT-TGAAATA-ATTA-ATATT-AAATATAT--TTTAATTAAAAT
1 TAAAATAATAATTATGAAATATATTATA-ATTAAAATATATAATTTAA-TAAAAT
55105654 ATATGATTTA
Statistics
Matches: 144, Mismatches: 9, Indels: 11
0.88 0.05 0.07
Matches are distributed among these distances:
102 5 0.03
103 6 0.04
104 9 0.06
105 7 0.05
106 6 0.04
107 99 0.69
108 12 0.08
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (107 bp):
TAAAATAATAATTATGAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCA
ATATTCTTATATGAATTTACTAAAATCATAATATAAATAATA
Found at i:55113654 original size:30 final size:30
Alignment explanation
Indices: 55113608--55113730 Score: 194
Period size: 30 Copynumber: 4.1 Consensus size: 30
55113598 TTTTATTATG
*
55113608 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
55113639 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
55113669 -CAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* * *
55113698 CTATTATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
55113728 CCA
1 CCA
55113731 TAAATATGGA
Statistics
Matches: 86, Mismatches: 5, Indels: 3
0.91 0.05 0.03
Matches are distributed among these distances:
29 29 0.34
30 50 0.58
31 7 0.08
ACGTcount: A:0.26, C:0.24, G:0.07, T:0.44
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:55113684 original size:59 final size:60
Alignment explanation
Indices: 55113609--55113728 Score: 197
Period size: 59 Copynumber: 2.0 Consensus size: 60
55113599 TTTATTATGC
55113609 CAATATCTCGATACCCATATCTTTGACTTTCCAATATTTGATACCCATATCTTTGACTTT
1 CAATATCTCGATACCCATATCTTTGACTTTCCAATATTTGATACCCATATCTTTGACTTT
* * * *
55113669 CAATAT-TTGATACCCATATCTTTGACTTTCTATTATTTGATACCCATATCTTTGATTTT
1 CAATATCTCGATACCCATATCTTTGACTTTCCAATATTTGATACCCATATCTTTGACTTT
55113728 C
1 C
55113729 CATAAATATG
Statistics
Matches: 56, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
59 50 0.89
60 6 0.11
ACGTcount: A:0.26, C:0.23, G:0.07, T:0.45
Consensus pattern (60 bp):
CAATATCTCGATACCCATATCTTTGACTTTCCAATATTTGATACCCATATCTTTGACTTT
Found at i:55118344 original size:30 final size:30
Alignment explanation
Indices: 55118298--55118421 Score: 203
Period size: 30 Copynumber: 4.1 Consensus size: 30
55118288 TTTTATTATG
*
55118298 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
55118329 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
55118359 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* * *
55118389 CTATTATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
55118419 CCA
1 CCA
55118422 TAAATATGGA
Statistics
Matches: 88, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
30 81 0.92
31 7 0.08
ACGTcount: A:0.26, C:0.24, G:0.06, T:0.44
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:55118353 original size:15 final size:15
Alignment explanation
Indices: 55118308--55118415 Score: 78
Period size: 15 Copynumber: 7.2 Consensus size: 15
55118298 CCAATATCTC
55118308 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
55118323 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
55118338 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
55118353 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
55118368 GATACCCATATCTTT
1 GATACCCATATCTTT
** * *
55118383 GACTTTCTAT-TATTT
1 GA-TACCCATATCTTT
55118398 GATACCCATATCTTT
1 GATACCCATATCTTT
55118413 GAT
1 GAT
55118416 TTTCCATAAA
Statistics
Matches: 67, Mismatches: 20, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
14 12 0.18
15 43 0.64
16 12 0.18
ACGTcount: A:0.26, C:0.22, G:0.07, T:0.44
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:55123315 original size:42 final size:42
Alignment explanation
Indices: 55123256--55123340 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
55123246 TAAACTTATC
55123256 CCTCGCTATAAAATGGTCATGCAAACAAGTCATAAAAATTCA
1 CCTCGCTATAAAATGGTCATGCAAACAAGTCATAAAAATTCA
55123298 CCTCGCTATAAAATGGTCATGCAAACAAGTCATAAAAATTCA
1 CCTCGCTATAAAATGGTCATGCAAACAAGTCATAAAAATTCA
55123340 C
1 C
55123341 GTGTAGACTC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.42, C:0.22, G:0.12, T:0.24
Consensus pattern (42 bp):
CCTCGCTATAAAATGGTCATGCAAACAAGTCATAAAAATTCA
Found at i:55146367 original size:12 final size:12
Alignment explanation
Indices: 55146347--55146377 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
55146337 TTGATTCCTA
*
55146347 AAATAAATAAAT
1 AAATGAATAAAT
55146359 AAATGAATAAAT
1 AAATGAATAAAT
55146371 AAATGAA
1 AAATGAA
55146378 GATGATGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.23
Consensus pattern (12 bp):
AAATGAATAAAT
Found at i:55147790 original size:44 final size:44
Alignment explanation
Indices: 55147693--55147947 Score: 151
Period size: 44 Copynumber: 5.6 Consensus size: 44
55147683 CGAAGCCAGA
** * * *
55147693 AATCTTATCTCCCTGAAATTACAGCAGAGCAAATTGAAACT-AAT
1 AATCTTATCTCCCTGAAATTACAGTGGAGCGAATT-AAAATAAAG
* *
55147737 AATCCTATCTCCCTGAAATTACAGTGGAGCGGATTAAAATAAAG
1 AATCTTATCTCCCTGAAATTACAGTGGAGCGAATTAAAATAAAG
* * * * * * *
55147781 GATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAG
1 AATCTTATCTCCCTGAAATTACAGT-G-G-AG--CGAATTAAAAT-AA---AG
* * **
55147834 AAATCTTATCTCCCTGAGATTACAGCGGAGC-AGATTGAAGCT--AG
1 -AATCTTATCTCCCTGAAATTACAGTGGAGCGA-ATT-AAAATAAAG
*
55147878 TAATCTTATCTCCCTGAGATTACAGTGGAGCGAATTAAAATAAA-
1 -AATCTTATCTCCCTGAAATTACAGTGGAGCGAATTAAAATAAAG
* *
55147922 AGATCTTATCTCTCTGAAGTTACAGT
1 A-ATCTTATCTCCCTGAAATTACAGT
55147948 AGAGTAGATC
Statistics
Matches: 162, Mismatches: 32, Indels: 34
0.71 0.14 0.15
Matches are distributed among these distances:
43 8 0.05
44 108 0.67
45 3 0.02
46 1 0.01
47 2 0.01
49 10 0.06
50 4 0.02
51 2 0.01
52 1 0.01
53 3 0.02
54 20 0.12
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAATTACAGTGGAGCGAATTAAAATAAAG
Found at i:55147871 original size:142 final size:139
Alignment explanation
Indices: 55147677--55148023 Score: 489
Period size: 142 Copynumber: 2.5 Consensus size: 139
55147667 CAACAGTGGA
* * * * *
55147677 GCAGATCGAAGCCAGAAATCTTATCTCCCTGAAATTACAGCAGAGCAAATTGAAACTAATAATCC
1 GCAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAATAATCC
* *
55147742 TATCTCCCTGAAATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTA
66 TATCTCCCTGAAATTACAGTGGAGCGAATTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGTA
55147807 GAGTAGATC
131 GAGTAGATC
*
55147816 GCATCAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAA
1 G---CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAATAA
* *
55147881 TCTTATCTCCCTGAGATTACAGTGGAGCGAATTAAAATAAAAGATCTTATCTCTCTGAAGTTACA
63 TCCTATCTCCCTGAAATTACAGTGGAGCGAATTAAAATAAAAGATCTTATCTCTCTGAAGTTACA
55147946 GTAGAGTAGATC
128 GTAGAGTAGATC
**
55147958 GC--ATT--AG---G---TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTACGAATCC
1 GCAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAATAATCC
55148013 TATCTCCCTGA
66 TATCTCCCTGA
55148024 CGTTGCGGTG
Statistics
Matches: 192, Mismatches: 13, Indels: 16
0.87 0.06 0.07
Matches are distributed among these distances:
129 55 0.29
132 1 0.01
135 2 0.01
137 3 0.02
139 2 0.01
142 129 0.67
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (139 bp):
GCAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAATAATCC
TATCTCCCTGAAATTACAGTGGAGCGAATTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGTA
GAGTAGATC
Found at i:55148018 original size:44 final size:43
Alignment explanation
Indices: 55147820--55148023 Score: 184
Period size: 44 Copynumber: 4.7 Consensus size: 43
55147810 TAGATCGCAT
*
55147820 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAG
1 CAGATTGAAGCTAG-AATCTTATCTCCCTGAGATTACAGCGGAG
*
55147864 CAGATTGAAGCTAGTAATCTTATCTCCCTGAGATTACAGTGGAG
1 CAGATTGAAGCTAG-AATCTTATCTCCCTGAGATTACAGCGGAG
** * * **
55147908 C-GAATT-AAAATAAAAGATCTTATCTCTCTGA-AGTTACAGTAGAG
1 CAG-ATTGAAGCT-AGA-ATCTTATCTCCCTGAGA-TTACAGCGGAG
* * * * *
55147952 TAGATCGCA-TTAG-GTCTTATCTCCCTGAGATTACAGCGGAG
1 CAGATTGAAGCTAGAATCTTATCTCCCTGAGATTACAGCGGAG
*
55147993 CAGATTGAAGCTACGAATCCTATCTCCCTGA
1 CAGATTGAAGCTA-GAATCTTATCTCCCTGA
55148024 CGTTGCGGTG
Statistics
Matches: 127, Mismatches: 23, Indels: 20
0.75 0.14 0.12
Matches are distributed among these distances:
41 28 0.22
42 3 0.02
43 8 0.06
44 86 0.68
45 2 0.02
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (43 bp):
CAGATTGAAGCTAGAATCTTATCTCCCTGAGATTACAGCGGAG
Found at i:55150086 original size:27 final size:26
Alignment explanation
Indices: 55150038--55150088 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 26
55150028 TAGAATTAAT
*
55150038 TTGTTATTCATCATTTGCTTTGTATA
1 TTGTTATTAATCATTTGCTTTGTATA
55150064 TTGTTAATTAATCATATTG-TTTGTA
1 TTGTT-ATTAATCAT-TTGCTTTGTA
55150089 AGAATTTCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 5 0.23
27 14 0.64
28 3 0.14
ACGTcount: A:0.24, C:0.08, G:0.12, T:0.57
Consensus pattern (26 bp):
TTGTTATTAATCATTTGCTTTGTATA
Found at i:55155609 original size:8 final size:8
Alignment explanation
Indices: 55155596--55155668 Score: 71
Period size: 8 Copynumber: 9.2 Consensus size: 8
55155586 TGGTAAGAAA
55155596 ATATTATT
1 ATATTATT
55155604 ATATTATT
1 ATATTATT
55155612 -TATT-TT
1 ATATTATT
*
55155618 A-ATTAAT
1 ATATTATT
55155625 ATAATTATT
1 AT-ATTATT
* *
55155634 ATGTTGTT
1 ATATTATT
55155642 AATATTATT
1 -ATATTATT
55155651 ATATTATT
1 ATATTATT
*
55155659 ATATTTTT
1 ATATTATT
55155667 AT
1 AT
55155669 GTTTATATGA
Statistics
Matches: 53, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
6 5 0.09
7 6 0.11
8 29 0.55
9 13 0.25
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.62
Consensus pattern (8 bp):
ATATTATT
Found at i:55156872 original size:23 final size:24
Alignment explanation
Indices: 55156842--55156887 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
55156832 AACTCTTCTA
55156842 TTCAA-TTTTTTTTACTTTCCCTT
1 TTCAATTTTTTTTTACTTTCCCTT
55156865 TTCAATTTTTTTTTACTTTCCCT
1 TTCAATTTTTTTTTACTTTCCCT
55156888 CCCTTTTTAC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 5 0.23
24 17 0.77
ACGTcount: A:0.13, C:0.22, G:0.00, T:0.65
Consensus pattern (24 bp):
TTCAATTTTTTTTTACTTTCCCTT
Found at i:55157008 original size:16 final size:17
Alignment explanation
Indices: 55156976--55157009 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
55156966 CTTTTACTCC
55156976 CAAAAATCAAAATCCCT
1 CAAAAATCAAAATCCCT
55156993 CAAAAATCAAAA-CCCT
1 CAAAAATCAAAATCCCT
55157009 C
1 C
55157010 TTTTTTCTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.53, C:0.32, G:0.00, T:0.15
Consensus pattern (17 bp):
CAAAAATCAAAATCCCT
Found at i:55157104 original size:23 final size:24
Alignment explanation
Indices: 55157067--55157113 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
55157057 GTACAATTAT
*
55157067 TTTTAAAAATTTTACAGAAAAATA
1 TTTTAAAAATATTACAGAAAAATA
*
55157091 TTTTAAAAA-ATTACATAAAAATA
1 TTTTAAAAATATTACAGAAAAATA
55157114 AAAAAAACCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 12 0.57
24 9 0.43
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.36
Consensus pattern (24 bp):
TTTTAAAAATATTACAGAAAAATA
Found at i:55165401 original size:18 final size:18
Alignment explanation
Indices: 55165378--55165413 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
55165368 GAAACTCTAT
55165378 ATCCTT-TAGGGATTTTAA
1 ATCCTTCTA-GGATTTTAA
55165396 ATCCTTCTAGGATTTTAA
1 ATCCTTCTAGGATTTTAA
55165414 TATAAAATTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 15 0.88
19 2 0.12
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.44
Consensus pattern (18 bp):
ATCCTTCTAGGATTTTAA
Found at i:55168281 original size:7 final size:7
Alignment explanation
Indices: 55168269--55168293 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
55168259 ACTATTTGCC
55168269 AAGCTTT
1 AAGCTTT
55168276 AAGCTTT
1 AAGCTTT
55168283 AAGCTTT
1 AAGCTTT
55168290 AAGC
1 AAGC
55168294 ATGGGTGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (7 bp):
AAGCTTT
Found at i:55173953 original size:10 final size:10
Alignment explanation
Indices: 55173938--55173962 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
55173928 GGTAAATAAA
55173938 ATATACATAT
1 ATATACATAT
55173948 ATATACATAT
1 ATATACATAT
55173958 ATATA
1 ATATA
55173963 ACTTAAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (10 bp):
ATATACATAT
Found at i:55175699 original size:45 final size:46
Alignment explanation
Indices: 55175650--55175760 Score: 131
Period size: 44 Copynumber: 2.5 Consensus size: 46
55175640 TCGATGCAGG
* *
55175650 AAGGCAAGATCTGCTATCTTTAG-TCTGCTCCACTGTCAGTACAGA
1 AAGGCAAGATCTGCTATCTTTAGATCTGCTCCACCGTCAATACAGA
* * *
55175695 AAGGCAAGAT-TGGCT-TC-TTCGATCTGCTTCACCGTCAATACAGG
1 AAGGCAAGATCT-GCTATCTTTAGATCTGCTCCACCGTCAATACAGA
*
55175739 AAGGAAAGATCTGCTATCTTTA
1 AAGGCAAGATCTGCTATCTTTA
55175761 ACCAACTCCA
Statistics
Matches: 54, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
43 3 0.06
44 33 0.61
45 16 0.30
46 2 0.04
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.29
Consensus pattern (46 bp):
AAGGCAAGATCTGCTATCTTTAGATCTGCTCCACCGTCAATACAGA
Found at i:55175835 original size:87 final size:87
Alignment explanation
Indices: 55175643--55176410 Score: 1058
Period size: 87 Copynumber: 8.8 Consensus size: 87
55175633 CCCGCAGTCG
** * * * *
55175643 ATGCAGGAAGGCAAGATCTGCTATCTTTAGTCTGCTCCACTGTCAGTACAGA--AAGGCAA-GAT
1 ATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTG-CA--ACCGATGGAGGCAAGGTT
* * * *
55175705 TGGCTTCTTCGATCTGCTTCACCGTCA
63 TTG-TT-TTCGATCTGCTTCGCTGTTA
* * *
55175732 ATACAGGAAGGAAAGATCTGCTATCTTTAACCAACTCCACTGCAACCGATGGAGGCAAGGTTTTG
1 ATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGTTTTG
55175797 TTTTCGATCTGCTTCGCTGTTA
66 TTTTCGATCTGCTTCGCTGTTA
*
55175819 ATACAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGTTTTG
1 ATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGTTTTG
55175884 TTTTCGATCTGCTTCGCTGTTA
66 TTTTCGATCTGCTTCGCTGTTA
* * *
55175906 ATACAGGAAGACAAGATCTGCTATCTTTAACCAGCTCCACTACAACCGA-GAGAGGCAAGGTTTG
1 ATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCGATG-GAGGCAAGGTTT-
* *
55175970 TGTTTTCGACCTGCTTCGCTGTCA
64 TGTTTTCGATCTGCTTCGCTGTTA
** * * * * *
55175994 ATGCAGGAAGGCAAGATCTATTATCTTCAACCAGCTCCACTACAAACGAGGGAGGCAAGGCTTGT
1 ATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGG-TTTT
* * * *
55176059 GTCTTCAATCTACTTCGCTGTCA
65 GTTTTCGATCTGCTTCGCTGTTA
* * * * *
55176082 ATGCAGGAATGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACCGATGGAGGCAAGGTTTTG
1 ATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGTTTTG
55176147 TTTTCGATCTGCTTCGCTGTTA
66 TTTTCGATCTGCTTCGCTGTTA
* * *
55176169 ATGCAGGAAGGTAAGATCTGCTATCTTTGACCAACTCCACTGCAACCGATGGAGGCAAGGTTTTG
1 ATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGTTTTG
55176234 TTTTCGATCTGCTTCGCTGTTA
66 TTTTCGATCTGCTTCGCTGTTA
* *
55176256 ATGCTGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAATGTTTTG
1 ATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGTTTTG
55176321 TTTTCGATCTGCTTCGCTGTTA
66 TTTTCGATCTGCTTCGCTGTTA
* *
55176343 ATGCAGGAAGGCAAGATCTGCTATCTTTGACCAGCTCCACTGCAACTGATGGAGGCAAGGTTTTG
1 ATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGTTTTG
55176408 TTT
66 TTT
55176411 CTTTGATCTG
Statistics
Matches: 615, Mismatches: 57, Indels: 16
0.89 0.08 0.02
Matches are distributed among these distances:
86 5 0.01
87 408 0.66
88 159 0.26
89 43 0.07
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.29
Consensus pattern (87 bp):
ATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGTTTTG
TTTTCGATCTGCTTCGCTGTTA
Found at i:55176066 original size:43 final size:43
Alignment explanation
Indices: 55175929--55176066 Score: 100
Period size: 43 Copynumber: 3.2 Consensus size: 43
55175919 AGATCTGCTA
* * * *
55175929 TCTTTAACCAGCTCCACTACAACCGAGAGAGGCAAGGTTTGTG
1 TCTTCAACCAGCTCCACTACAAACGAGGGAGGCAAGGCTTGTG
* * * * * * * * * *
55175972 TTTTCGACCTGCTTCGCTGTC-AATGCAGGAAGGCAAGATCTAT-TA
1 TCTTCAACCAGCTCCACT-ACAAACG-AGGGAGGCAAG-GCT-TGTG
55176017 TCTTCAACCAGCTCCACTACAAACGAGGGAGGCAAGGCTTGTG
1 TCTTCAACCAGCTCCACTACAAACGAGGGAGGCAAGGCTTGTG
55176060 TCTTCAA
1 TCTTCAA
55176067 TCTACTTCGC
Statistics
Matches: 65, Mismatches: 24, Indels: 12
0.64 0.24 0.12
Matches are distributed among these distances:
42 1 0.02
43 24 0.37
44 21 0.32
45 18 0.28
46 1 0.02
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.25
Consensus pattern (43 bp):
TCTTCAACCAGCTCCACTACAAACGAGGGAGGCAAGGCTTGTG
Found at i:55177032 original size:106 final size:108
Alignment explanation
Indices: 55176845--55177038 Score: 277
Period size: 106 Copynumber: 1.8 Consensus size: 108
55176835 GAAAAATGCT
55176845 TGAAAAAGATTATCAAAATGGACAAAATGAAATTTTGTGGAGAGCAAAGCTCTAAACAAACAAAT
1 TGAAAAAGATTATCAAAATGGACAAAATGAAATTTTGTGGAGAGCAAAGCTCTAAACAAACAAAT
55176910 CAATCAAGACAACAAATTTTGCTGAGATACGAGATGTATAAGA
66 CAATCAAGACAACAAATTTTGCTGAGATACGAGATGTATAAGA
* * * * **
55176953 TGAAAAAGATTATC-ACA-GGATAAGATGGAAA-TTTGTTGAGAGCAAAGCTCTAAATGAACAAA
1 TGAAAAAGATTATCAAAATGGACAAAAT-GAAATTTTGTGGAGAGCAAAGCTCTAAACAAACAAA
* * *
55177015 TTAATCAAGATAGCAAATTTTGCT
65 TCAATCAAGACAACAAATTTTGCT
55177039 AGAATGCAAA
Statistics
Matches: 76, Mismatches: 9, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
106 56 0.74
107 6 0.08
108 14 0.18
ACGTcount: A:0.46, C:0.11, G:0.18, T:0.24
Consensus pattern (108 bp):
TGAAAAAGATTATCAAAATGGACAAAATGAAATTTTGTGGAGAGCAAAGCTCTAAACAAACAAAT
CAATCAAGACAACAAATTTTGCTGAGATACGAGATGTATAAGA
Found at i:55177390 original size:13 final size:12
Alignment explanation
Indices: 55177372--55177416 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 12
55177362 TTGGCCTCTC
55177372 CTTTTTCTCTTTT
1 CTTTTTCT-TTTT
55177385 CTTTTTCGTTTTT
1 CTTTTTC-TTTTT
*
55177398 CTTTTCCTTTTTT
1 CTTTTTC-TTTTT
55177411 CTTTTT
1 CTTTTT
55177417 GTTTCTTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
13 27 0.96
14 1 0.04
ACGTcount: A:0.00, C:0.20, G:0.02, T:0.78
Consensus pattern (12 bp):
CTTTTTCTTTTT
Found at i:55177396 original size:20 final size:20
Alignment explanation
Indices: 55177373--55177431 Score: 59
Period size: 20 Copynumber: 3.0 Consensus size: 20
55177363 TGGCCTCTCC
55177373 TTTTTCTCTTTTCTTTTTCG
1 TTTTTCTCTTTTCTTTTTCG
* *
55177393 TTTTTCT-TTTCCTTTTTTCT
1 TTTTTCTCTTTTC-TTTTTCG
*
55177413 TTTTGTTTCTTTT-TTTTTC
1 TTTT-TCTCTTTTCTTTTTC
55177432 AAGTGAAGTT
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
19 4 0.12
20 23 0.72
21 2 0.06
22 3 0.09
ACGTcount: A:0.00, C:0.17, G:0.03, T:0.80
Consensus pattern (20 bp):
TTTTTCTCTTTTCTTTTTCG
Found at i:55177402 original size:18 final size:17
Alignment explanation
Indices: 55177374--55177430 Score: 55
Period size: 19 Copynumber: 3.2 Consensus size: 17
55177364 GGCCTCTCCT
55177374 TTTTCTCTTTTCTTTTTC
1 TTTT-TCTTTTCTTTTTC
55177392 GTTTTTCTTTTCCTTTTTTC
1 -TTTTTCTTTT-C-TTTTTC
*
55177412 TTTTT-GTTTCTTTTT-
1 TTTTTCTTTTCTTTTTC
55177427 TTTT
1 TTTT
55177431 CAAGTGAAGT
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
15 4 0.11
16 5 0.14
17 1 0.03
18 9 0.26
19 10 0.29
20 6 0.17
ACGTcount: A:0.00, C:0.16, G:0.04, T:0.81
Consensus pattern (17 bp):
TTTTTCTTTTCTTTTTC
Found at i:55177402 original size:26 final size:26
Alignment explanation
Indices: 55177372--55177429 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
55177362 TTGGCCTCTC
55177372 CTTTTTCTCTTTTCTTTTTCGTTT-TT
1 CTTTTTCTCTTTTCTTTTT-GTTTCTT
* *
55177398 CTTTTCCTTTTTTCTTTTTGTTTCTT
1 CTTTTTCTCTTTTCTTTTTGTTTCTT
*
55177424 TTTTTT
1 CTTTTT
55177430 TCAAGTGAAG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 4 0.15
26 23 0.85
ACGTcount: A:0.00, C:0.17, G:0.03, T:0.79
Consensus pattern (26 bp):
CTTTTTCTCTTTTCTTTTTGTTTCTT
Found at i:55177904 original size:9 final size:8
Alignment explanation
Indices: 55177866--55177934 Score: 63
Period size: 8 Copynumber: 8.4 Consensus size: 8
55177856 CCGGTAGAGG
*
55177866 TTTTTTCT
1 TTTTTTGT
55177874 TTTATTT-T
1 TTT-TTTGT
55177882 TGTTTTTGT
1 T-TTTTTGT
55177891 TTTTTTGT
1 TTTTTTGT
55177899 TATTTTT-T
1 T-TTTTTGT
55177907 TGTTTTTGT
1 T-TTTTTGT
55177916 TGTTTTTGT
1 T-TTTTTGT
55177925 TTTTTT-T
1 TTTTTTGT
55177932 TTT
1 TTT
55177935 GCCTCCACTG
Statistics
Matches: 55, Mismatches: 1, Indels: 11
0.82 0.01 0.16
Matches are distributed among these distances:
7 4 0.07
8 28 0.51
9 23 0.42
ACGTcount: A:0.03, C:0.01, G:0.10, T:0.86
Consensus pattern (8 bp):
TTTTTTGT
Found at i:55177906 original size:25 final size:26
Alignment explanation
Indices: 55177878--55177933 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
55177868 TTTTCTTTTA
55177878 TTTTTGTTTTTGTT-TTTTTGTTATT
1 TTTTTGTTTTTGTTGTTTTTGTTATT
*
55177903 TTTTTGTTTTTGTTGTTTTTGTTTTT
1 TTTTTGTTTTTGTTGTTTTTGTTATT
55177929 TTTTT
1 TTTTT
55177934 TGCCTCCACT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
25 14 0.48
26 15 0.52
ACGTcount: A:0.02, C:0.00, G:0.12, T:0.86
Consensus pattern (26 bp):
TTTTTGTTTTTGTTGTTTTTGTTATT
Found at i:55177912 original size:6 final size:6
Alignment explanation
Indices: 55177873--55177935 Score: 53
Period size: 6 Copynumber: 10.8 Consensus size: 6
55177863 AGGTTTTTTC
* *
55177873 TTTTAT TTTTGT TTTTGT TTTT-T TGTTATTT TTTTGT TTTTG- --TTGT
1 TTTTGT TTTTGT TTTTGT TTTTGT T-TT-TGT TTTTGT TTTTGT TTTTGT
*
55177919 TTTTGT TTTTTT TTTTG
1 TTTTGT TTTTGT TTTTG
55177936 CCTCCACTGA
Statistics
Matches: 47, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
3 3 0.06
5 2 0.04
6 37 0.79
7 3 0.06
8 2 0.04
ACGTcount: A:0.03, C:0.00, G:0.13, T:0.84
Consensus pattern (6 bp):
TTTTGT
Found at i:55181454 original size:12 final size:12
Alignment explanation
Indices: 55181437--55181463 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
55181427 GGTAAATAAA
55181437 ATATACATATAT
1 ATATACATATAT
55181449 ATATACATATAT
1 ATATACATATAT
55181461 ATA
1 ATA
55181464 ACTTAAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (12 bp):
ATATACATATAT
Found at i:55183049 original size:6 final size:6
Alignment explanation
Indices: 55183040--55183067 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
55183030 TATCTTCTTC
55183040 TTTTCT TTTTCT TTTTCT TTTTCT TTTT
1 TTTTCT TTTTCT TTTTCT TTTTCT TTTT
55183068 TTGCGGAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTCT
Found at i:55183051 original size:11 final size:11
Alignment explanation
Indices: 55183032--55183066 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
55183022 GACAAAAATA
*
55183032 TCTTCTTCTTT
1 TCTTTTTCTTT
55183043 TCTTTTTCTTTT
1 TCTTTTTC-TTT
55183055 TCTTTTTCTTT
1 TCTTTTTCTTT
55183066 T
1 T
55183067 TTTGCGGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 11 0.50
12 11 0.50
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (11 bp):
TCTTTTTCTTT
Found at i:55191735 original size:35 final size:32
Alignment explanation
Indices: 55191664--55191741 Score: 93
Period size: 35 Copynumber: 2.3 Consensus size: 32
55191654 ACTCATATAT
* * *
55191664 GACTACATCTTGTCGTCCTAAAAAAAGCCTAT
1 GACTACATCTTGTCGCCCTAAAAAAAACCTAC
55191696 GACTACATCTTGTCGCCCTCAAAGAAAAAACCTAC
1 GACTACATCTTGTCGCCCT--AA-AAAAAACCTAC
*
55191731 GACTATATCTT
1 GACTACATCTT
55191742 TATTGGCTTA
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
32 18 0.46
34 2 0.05
35 19 0.49
ACGTcount: A:0.35, C:0.27, G:0.12, T:0.27
Consensus pattern (32 bp):
GACTACATCTTGTCGCCCTAAAAAAAACCTAC
Found at i:55198632 original size:12 final size:12
Alignment explanation
Indices: 55198615--55198639 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
55198605 TGGCCTTGAC
55198615 GAGGTTGAGATT
1 GAGGTTGAGATT
55198627 GAGGTTGAGATT
1 GAGGTTGAGATT
55198639 G
1 G
55198640 GTCCTCGTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.00, G:0.44, T:0.32
Consensus pattern (12 bp):
GAGGTTGAGATT
Found at i:55203435 original size:24 final size:24
Alignment explanation
Indices: 55203403--55203465 Score: 110
Period size: 24 Copynumber: 2.6 Consensus size: 24
55203393 GCGAAGAAGT
55203403 ACGCCAATAAAGCGGTTATAGTCG
1 ACGCCAATAAAGCGGTTATAGTCG
55203427 ACGCCAATAAAGCGGTTATAGTCG
1 ACGCCAATAAAGCGGTTATAGTCG
55203451 ACGCCAA-AAACGCGG
1 ACGCCAATAAA-GCGG
55203466 CAGTCTGATT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
23 3 0.08
24 35 0.92
ACGTcount: A:0.35, C:0.24, G:0.25, T:0.16
Consensus pattern (24 bp):
ACGCCAATAAAGCGGTTATAGTCG
Found at i:55203828 original size:55 final size:55
Alignment explanation
Indices: 55203744--55203856 Score: 208
Period size: 55 Copynumber: 2.1 Consensus size: 55
55203734 GCGGAGATTC
* *
55203744 GTAGGAGGAATGGACGTCCATCACCGGTGGCCCAAACTGTATAAGGTCACTATTA
1 GTAGGAAGAATGGACGTCCATCACCGGTGGCCCAAACGGTATAAGGTCACTATTA
55203799 GTAGGAAGAATGGACGTCCATCACCGGTGGCCCAAACGGTATAAGGTCACTATTA
1 GTAGGAAGAATGGACGTCCATCACCGGTGGCCCAAACGGTATAAGGTCACTATTA
55203854 GTA
1 GTA
55203857 AATTATCAGA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.21
Consensus pattern (55 bp):
GTAGGAAGAATGGACGTCCATCACCGGTGGCCCAAACGGTATAAGGTCACTATTA
Found at i:55210348 original size:2 final size:2
Alignment explanation
Indices: 55210341--55210374 Score: 59
Period size: 2 Copynumber: 16.5 Consensus size: 2
55210331 CTCATATCTC
55210341 AT AT AT AT AT AT AT AT AT AT AT AT AT AT ACT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT A
55210375 ACAATTTAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 29 0.94
3 2 0.06
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:55213401 original size:40 final size:40
Alignment explanation
Indices: 55213357--55213483 Score: 125
Period size: 40 Copynumber: 3.2 Consensus size: 40
55213347 AACACACCAG
*
55213357 TTTGACACTTAGTGCCTCATCGGATAATTCGAAGTAATAA
1 TTTGACACCTAGTGCCTCATCGGATAATTCGAAGTAATAA
* * * **
55213397 TTTGACACCCAGTGTCTCATCGGCTAAACCGAAGT-A-AA
1 TTTGACACCTAGTGCCTCATCGGATAATTCGAAGTAATAA
* ** *
55213435 -TTGGCACCTAGTGCCTCATCAAATTAATTCGAAGTAGTAA
1 TTTGACACCTAGTGCCTCATCGGA-TAATTCGAAGTAATAA
*
55213475 ATTGACACC
1 TTTGACACC
55213484 CAATGTCTCA
Statistics
Matches: 67, Mismatches: 16, Indels: 7
0.74 0.18 0.08
Matches are distributed among these distances:
37 17 0.25
38 11 0.16
39 1 0.01
40 31 0.46
41 7 0.10
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.28
Consensus pattern (40 bp):
TTTGACACCTAGTGCCTCATCGGATAATTCGAAGTAATAA
Found at i:55214390 original size:15 final size:18
Alignment explanation
Indices: 55214353--55214439 Score: 58
Period size: 17 Copynumber: 4.8 Consensus size: 18
55214343 TAGCCTTGCG
55214353 TTTTTCTTTCTCTTTCTCT
1 TTTTTCTTT-TCTTTCTCT
55214372 TTTTTCTTTT-TTTC-C-
1 TTTTTCTTTTCTTTCTCT
* **
55214387 TTTTTGTTTTCGTTTGGCT
1 TTTTTCTTTTC-TTTCTCT
55214406 TTGGCTTTCTTTTCTTTCT-T
1 TT---TTTCTTTTCTTTCTCT
55214426 TTTTT-TATTTCTTT
1 TTTTTCT-TTTCTTT
55214440 TATTATTATA
Statistics
Matches: 55, Mismatches: 5, Indels: 18
0.71 0.06 0.23
Matches are distributed among these distances:
15 9 0.16
16 2 0.04
17 17 0.31
18 2 0.04
19 11 0.20
20 3 0.05
21 3 0.05
22 8 0.15
ACGTcount: A:0.01, C:0.17, G:0.07, T:0.75
Consensus pattern (18 bp):
TTTTTCTTTTCTTTCTCT
Found at i:55219542 original size:12 final size:12
Alignment explanation
Indices: 55219525--55219551 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
55219515 ACGTCATATT
55219525 CCAAAAAATTCC
1 CCAAAAAATTCC
55219537 CCAAAAAATTCC
1 CCAAAAAATTCC
55219549 CCA
1 CCA
55219552 TCTGCGTAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.48, C:0.37, G:0.00, T:0.15
Consensus pattern (12 bp):
CCAAAAAATTCC
Found at i:55221853 original size:40 final size:40
Alignment explanation
Indices: 55221808--55221885 Score: 104
Period size: 40 Copynumber: 1.9 Consensus size: 40
55221798 ATTTCAAATT
* *
55221808 CACTTTTGATTCAAT-CACAATTCAATTCAATTTCACTTTC
1 CACTTTTGAATCAATACACAATTCAAAT-AATTTCACTTTC
* *
55221848 CACTTTTTAATCAATACACAGTTCAAATAATTTCACTT
1 CACTTTTGAATCAATACACAATTCAAATAATTTCACTT
55221886 CAATTCAATT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
40 23 0.70
41 10 0.30
ACGTcount: A:0.33, C:0.23, G:0.03, T:0.41
Consensus pattern (40 bp):
CACTTTTGAATCAATACACAATTCAAATAATTTCACTTTC
Found at i:55222745 original size:19 final size:19
Alignment explanation
Indices: 55222710--55222764 Score: 51
Period size: 19 Copynumber: 3.0 Consensus size: 19
55222700 CTTTACTTTA
* *
55222710 TATT-ATAATAATATAATT
1 TATTAATAATCATTTAATT
55222728 TATTAATAATCATTTAATT
1 TATTAATAATCATTTAATT
* * *
55222747 AATAAAT-ATCTTTTAATT
1 TATTAATAATCATTTAATT
55222765 ATAACACAAG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
18 14 0.45
19 17 0.55
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (19 bp):
TATTAATAATCATTTAATT
Found at i:55222853 original size:15 final size:15
Alignment explanation
Indices: 55222830--55222870 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
55222820 ATTTGGCACC
55222830 ATTTA-ATTTATTTA
1 ATTTATATTTATTTA
*
55222844 ATTTATATTTAATTA
1 ATTTATATTTATTTA
*
55222859 ATTAATATTTAT
1 ATTTATATTTAT
55222871 AAATATATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
14 5 0.22
15 18 0.78
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (15 bp):
ATTTATATTTATTTA
Found at i:55231408 original size:22 final size:22
Alignment explanation
Indices: 55231383--55231432 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 22
55231373 TAAGCATAAT
55231383 AATGTTGTCCGAATGATGGTTA
1 AATGTTGTCCGAATGATGGTTA
* * *
55231405 AATGCTGTCCGAATGTTGTTTA
1 AATGTTGTCCGAATGATGGTTA
55231427 AATGTT
1 AATGTT
55231433 TTCTATTTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.26, C:0.10, G:0.24, T:0.40
Consensus pattern (22 bp):
AATGTTGTCCGAATGATGGTTA
Found at i:55231476 original size:70 final size:69
Alignment explanation
Indices: 55231337--55231484 Score: 179
Period size: 70 Copynumber: 2.1 Consensus size: 69
55231327 TGATGACAAG
* * * *
55231337 ATGCTATCCTAATGTTGGTTAAATGATGTCCATTTTTAAGCATAATAATGTTGTCCGAATGATGG
1 ATGCTGTCCGAATGTTGGTTAAATGATGTCCATTTTTAAGCATAATAATGCTGTCCGAATGATGC
55231402 TTAA
66 TTAA
* * * * * * **
55231406 ATGCTGTCCGAATGTTGTTTAAATGTTTTCTATTTTTTTAGCATACTAATGCTGTCCGAATTTTG
1 ATGCTGTCCGAATGTTGGTTAAATGATGTCCA-TTTTTAAGCATAATAATGCTGTCCGAATGATG
55231471 CTTAA
65 CTTAA
55231476 ATGCTGTCC
1 ATGCTGTCC
55231485 ATTTTTTAGC
Statistics
Matches: 66, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
69 26 0.39
70 40 0.61
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.43
Consensus pattern (69 bp):
ATGCTGTCCGAATGTTGGTTAAATGATGTCCATTTTTAAGCATAATAATGCTGTCCGAATGATGC
TTAA
Found at i:55231509 original size:47 final size:47
Alignment explanation
Indices: 55231405--55231574 Score: 250
Period size: 47 Copynumber: 3.6 Consensus size: 47
55231395 ATGATGGTTA
* * *
55231405 AATGCTGTCCGAATGTTGTTTAAATGTTTTCTATTTTTTTAGCATACT
1 AATGCTGTCCGAATGTTGTTTAAATGCTGTCCA-TTTTTTAGCATACT
* *
55231453 AATGCTGTCCGAATTTTGCTTAAATGCTGTCCATTTTTTAGCATACT
1 AATGCTGTCCGAATGTTGTTTAAATGCTGTCCATTTTTTAGCATACT
*
55231500 AATGATGTCCGAATGTTGTTTAAATGCTGTCCATTTTTTAGCATACT
1 AATGCTGTCCGAATGTTGTTTAAATGCTGTCCATTTTTTAGCATACT
* * *
55231547 AATGCTGCCCAAATGTTGGTTAAATGCT
1 AATGCTGTCCGAATGTTGTTTAAATGCT
55231575 ATTCGAATGT
Statistics
Matches: 110, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
47 82 0.75
48 28 0.25
ACGTcount: A:0.25, C:0.16, G:0.16, T:0.43
Consensus pattern (47 bp):
AATGCTGTCCGAATGTTGTTTAAATGCTGTCCATTTTTTAGCATACT
Found at i:55231582 original size:69 final size:69
Alignment explanation
Indices: 55231507--55231657 Score: 257
Period size: 69 Copynumber: 2.2 Consensus size: 69
55231497 ACTAATGATG
55231507 TCCGAATGTTGTTTAAATGCTGTCCATTTTTTAGCATACTAATGCTGCCCAAATGTTGGTTAAAT
1 TCCGAATGTTGTTTAAATGCTGTCCATTTTTTAGCATACTAATGCTGCCCAAATGTTGGTTAAAT
55231572 GCTA
66 GCTA
* * *
55231576 TTCGAATGTTGTTTAAATGCTGTCCATTTTTTAGCATACTAATGCTGTCCGAATGTTGGTTAAAT
1 TCCGAATGTTGTTTAAATGCTGTCCATTTTTTAGCATACTAATGCTGCCCAAATGTTGGTTAAAT
*
55231641 GCTG
66 GCTA
*
55231645 TCCAAATGTTGTT
1 TCCGAATGTTGTT
55231658 ACTGTTGTCC
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
69 76 1.00
ACGTcount: A:0.25, C:0.16, G:0.19, T:0.41
Consensus pattern (69 bp):
TCCGAATGTTGTTTAAATGCTGTCCATTTTTTAGCATACTAATGCTGCCCAAATGTTGGTTAAAT
GCTA
Found at i:55231717 original size:116 final size:114
Alignment explanation
Indices: 55231347--55231701 Score: 315
Period size: 116 Copynumber: 3.1 Consensus size: 114
55231337 ATGCTATCCT
* * * * * *
55231347 AATGTTGGTTAAATGATGTCCATTTTTAAGCATAATAATGTTGTCCGAATGATGGTTAAATGCTG
1 AATGTTGCTTAAATGCTGTCCATTTTTTAGCATACTAATGATGTCCGAATGTTGGTTAAATGCTG
* * * * * * * * *
55231412 TCCGAATGTTGTTTAAATGTT-TTCTATTTTTTTAGCATACTAATGCTGTCCG
66 TCCAAATGTTGCTT-ACTGTTGTCCAATTATTGT-G-A-ATTAATGCTGTTCG
* *
55231464 AATTTTGCTTAAATGCTGTCCATTTTTTAGCATACTAATGATGTCCGAATGTTGTTTAAATGCTG
1 AATGTTGCTTAAATGCTGTCCATTTTTTAGCATACTAATGATGTCCGAATGTTGGTTAAATGCTG
** * * * * * * *
55231529 TCCATTTTTTAGCATACTAATGCTGCCCAAATGTTG-G--TTAAATGCTATTCG
66 TCCAAATGTT-GC-T--TACTGTTGTCCAATTATTGTGAATT-AATGCTGTTCG
* *
55231580 AATGTTGTTTAAATGCTGTCCATTTTTTAGCATACTAATGCTGTCCGAATGTTGGTTAAATGCTG
1 AATGTTGCTTAAATGCTGTCCATTTTTTAGCATACTAATGATGTCCGAATGTTGGTTAAATGCTG
* *
55231645 TCCAAATGTTG-TTACTGTTGTCCGAATTATTGTGAATTAATGATGTTTG
66 TCCAAATGTTGCTTACTGTTGTCC-AATTATTGTGAATTAATGCTGTTCG
55231694 AATGTTGC
1 AATGTTGC
55231702 AATTCAAAGC
Statistics
Matches: 189, Mismatches: 39, Indels: 23
0.75 0.16 0.09
Matches are distributed among these distances:
111 8 0.04
112 6 0.03
113 2 0.01
114 15 0.08
115 4 0.02
116 77 0.41
117 63 0.33
118 1 0.01
119 2 0.01
120 5 0.03
121 6 0.03
ACGTcount: A:0.26, C:0.14, G:0.19, T:0.42
Consensus pattern (114 bp):
AATGTTGCTTAAATGCTGTCCATTTTTTAGCATACTAATGATGTCCGAATGTTGGTTAAATGCTG
TCCAAATGTTGCTTACTGTTGTCCAATTATTGTGAATTAATGCTGTTCG
Found at i:55234982 original size:19 final size:18
Alignment explanation
Indices: 55234913--55234982 Score: 50
Period size: 19 Copynumber: 3.6 Consensus size: 18
55234903 CATTCTAGAA
* *
55234913 TTATAAAAAACAGAAAATT
1 TTATAAAAATCATAAAA-T
*
55234932 TTATAAAAATTATTAGAAAT
1 TTATAAAAATCA-TA-AAAT
*
55234952 TAATTAAAAAATCATAAAACT
1 TTA-T-AAAAATCATAAAA-T
55234973 TTATAAAAAT
1 TTATAAAAAT
55234983 AGAATTTTGT
Statistics
Matches: 40, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
19 16 0.40
20 8 0.20
21 9 0.22
22 7 0.17
ACGTcount: A:0.60, C:0.04, G:0.03, T:0.33
Consensus pattern (18 bp):
TTATAAAAATCATAAAAT
Found at i:55238791 original size:17 final size:18
Alignment explanation
Indices: 55238771--55238804 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
55238761 AATTTATAAT
55238771 AATTA-TTATAAATTTTG
1 AATTATTTATAAATTTTG
*
55238788 AATTATTTTTAAATTTT
1 AATTATTTATAAATTTT
55238805 TTATTCTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (18 bp):
AATTATTTATAAATTTTG
Found at i:55239635 original size:12 final size:14
Alignment explanation
Indices: 55239605--55239636 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
55239595 CAAACAAACA
55239605 AAAAATTAGAATGT
1 AAAAATTAGAATGT
55239619 AAAAATTA-AAT-T
1 AAAAATTAGAATGT
55239631 AAAAAT
1 AAAAAT
55239637 AAAAATATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.39
13 3 0.17
14 8 0.44
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.28
Consensus pattern (14 bp):
AAAAATTAGAATGT
Found at i:55247163 original size:30 final size:30
Alignment explanation
Indices: 55247127--55247189 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
55247117 ACTTATTTTA
55247127 TTGTTAATTTTATTATTATTTTAAAGACAT
1 TTGTTAATTTTATTATTATTTTAAAGACAT
* * *
55247157 TTGTTAATTTTGTTATTATTTTATAGGCAT
1 TTGTTAATTTTATTATTATTTTAAAGACAT
55247187 TTG
1 TTG
55247190 CTTGTTAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.27, C:0.03, G:0.11, T:0.59
Consensus pattern (30 bp):
TTGTTAATTTTATTATTATTTTAAAGACAT
Found at i:55247307 original size:18 final size:18
Alignment explanation
Indices: 55247272--55247310 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
55247262 AAAATATTTA
*
55247272 TTTTGATGTTTTTAATAT
1 TTTTGATGTTTATAATAT
55247290 TTTTGATGTATTAT-ATAT
1 TTTTGATGT-TTATAATAT
55247308 TTT
1 TTT
55247311 AAAATTATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 16 0.84
19 3 0.16
ACGTcount: A:0.23, C:0.00, G:0.10, T:0.67
Consensus pattern (18 bp):
TTTTGATGTTTATAATAT
Found at i:55247582 original size:3 final size:3
Alignment explanation
Indices: 55247570--55247603 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
55247560 ATAACGTGTT
55247570 ATA A-A ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
55247604 GCAAAGAACA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.07
3 28 0.93
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:55248176 original size:10 final size:10
Alignment explanation
Indices: 55248148--55248212 Score: 55
Period size: 10 Copynumber: 6.7 Consensus size: 10
55248138 TACATTCTAG
55248148 AATT-ATAAA
1 AATTAATAAA
55248157 AA--AATAAA
1 AATTAATAAA
*
55248165 AATTATTAAA
1 AATTAATAAA
55248175 AATTAATAAA
1 AATTAATAAA
* *
55248185 AAATCATAAA
1 AATTAATAAA
* *
55248195 ACTTTATAAA
1 AATTAATAAA
55248205 AATATAAT
1 AAT-TAAT
55248213 TTATTATTTT
Statistics
Matches: 43, Mismatches: 9, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
8 7 0.16
9 2 0.05
10 31 0.72
11 3 0.07
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (10 bp):
AATTAATAAA
Found at i:55250400 original size:13 final size:13
Alignment explanation
Indices: 55250384--55250413 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
55250374 AGTGCTGCAA
55250384 AAAAATGCTTATG
1 AAAAATGCTTATG
*
55250397 AAAAATGCTTTTG
1 AAAAATGCTTATG
55250410 AAAA
1 AAAA
55250414 GCTTGGTCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.50, C:0.07, G:0.13, T:0.30
Consensus pattern (13 bp):
AAAAATGCTTATG
Found at i:55254595 original size:56 final size:56
Alignment explanation
Indices: 55254532--55254646 Score: 230
Period size: 56 Copynumber: 2.1 Consensus size: 56
55254522 AAATTCAATC
55254532 ACCACCATATTTTGCATGTCAACAAGGACATGTATTCCCTCAACTGGACGAGCATA
1 ACCACCATATTTTGCATGTCAACAAGGACATGTATTCCCTCAACTGGACGAGCATA
55254588 ACCACCATATTTTGCATGTCAACAAGGACATGTATTCCCTCAACTGGACGAGCATA
1 ACCACCATATTTTGCATGTCAACAAGGACATGTATTCCCTCAACTGGACGAGCATA
55254644 ACC
1 ACC
55254647 TATATTAAAA
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 59 1.00
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.24
Consensus pattern (56 bp):
ACCACCATATTTTGCATGTCAACAAGGACATGTATTCCCTCAACTGGACGAGCATA
Found at i:55256606 original size:27 final size:28
Alignment explanation
Indices: 55256572--55256630 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 28
55256562 CTTAGAATTA
*
55256572 TTATTGTAATA-TAAC-TAT-ACTACTTT
1 TTATTGTAAAACTAACGTATGA-TACTTT
55256598 TTATATGTAAAACTAACGTATGATACTTT
1 TTAT-TGTAAAACTAACGTATGATACTTT
55256627 TTAT
1 TTAT
55256631 GTTTGGTATT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
26 4 0.14
27 6 0.21
28 4 0.14
29 13 0.46
30 1 0.04
ACGTcount: A:0.36, C:0.10, G:0.07, T:0.47
Consensus pattern (28 bp):
TTATTGTAAAACTAACGTATGATACTTT
Found at i:55258629 original size:21 final size:21
Alignment explanation
Indices: 55258605--55258657 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
55258595 CATTGTTTCT
*
55258605 AATCTCACCGCTACAGTACCC
1 AATCTCACCGCTACAGTAACC
*
55258626 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAGTAACC
55258647 AATCTCACCGC
1 AATCTCACCGC
55258658 CACCGCTGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.30, C:0.40, G:0.09, T:0.21
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:55259468 original size:26 final size:25
Alignment explanation
Indices: 55259439--55259495 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 25
55259429 AATTATTTAT
55259439 TTATATTAAATTATATTTAATAATAA
1 TTATATTAAATTATATTTAATAAT-A
* * * *
55259465 TTATTTTAGATTATATTTTATAGTA
1 TTATATTAAATTATATTTAATAATA
55259490 TTATAT
1 TTATAT
55259496 ATTATGATTT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
25 6 0.23
26 20 0.77
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (25 bp):
TTATATTAAATTATATTTAATAATA
Found at i:55259497 original size:120 final size:120
Alignment explanation
Indices: 55259343--55259954 Score: 976
Period size: 120 Copynumber: 5.1 Consensus size: 120
55259333 CCACAAAATC
*
55259343 AATTATTTTAGATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATAT
1 AATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATAT
* *
55259408 TTAATATTAAGAATTTTATTAAATTATTTA-TTTATATTAAATTATATTTAATAAT
66 TTAATATTAAGAATTTTATTAAATTATATATTTTA-ATTAAAATATATTTAATAAT
*
55259463 AATTATTTTAGATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATAT
1 AATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATA-
* *
55259528 TTTAATATTAAGAATTTTATTAAATTATAT-TTTTTATTAAATTATATTTAATAAT
65 TTTAATATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAAT
* * *
55259583 TATTATTTTAAATTATATTTTATACTATTATATATTATAATTTTAGTAAATTCATATAAGAATAT
1 AATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATAT
*
55259648 TTAATATTAAGAATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAAT
66 TTAATATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAAT
* * *
55259703 AATTATTTCAAATTATATTTTATAGTATCATATATTATAATTTTAGTAAATTCATATAAGAATAT
1 AATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATAT
* * * *
55259768 TGATTATTAAGAATTTTATTAAATCATATATTTTAATTAAAATGTATTTAATAAT
66 TTAATATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAAT
* * * *
55259823 AATTATGTTAAATTATATTTTATAGTATCATATATTATGATTTGAGTAAATTTATATAAGAATAT
1 AATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATAT
* *
55259888 TGATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAAT
66 TTAATATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAAT
*
55259943 AATTATGTTAAA
1 AATTATTTTAAA
55259955 ATATGATTAA
Statistics
Matches: 466, Mismatches: 23, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
119 29 0.06
120 405 0.87
121 32 0.07
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.51
Consensus pattern (120 bp):
AATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATAT
TTAATATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAAT
Found at i:55259562 original size:17 final size:17
Alignment explanation
Indices: 55259542--55259576 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
55259532 ATATTAAGAA
55259542 TTTTATTAAATTATATT
1 TTTTATTAAATTATATT
55259559 TTTTATTAAATTATATT
1 TTTTATTAAATTATATT
55259576 T
1 T
55259577 AATAATTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (17 bp):
TTTTATTAAATTATATT
Found at i:55259585 original size:13 final size:13
Alignment explanation
Indices: 55259567--55259624 Score: 64
Period size: 13 Copynumber: 4.3 Consensus size: 13
55259557 TTTTTTATTA
*
55259567 AATTATATTTAAT
1 AATTATATTTTAT
55259580 AATTATTATTTTA-
1 AATTA-TATTTTAT
55259593 AATTATATTTTAT
1 AATTATATTTTAT
*
55259606 ACTATTATATATTAT
1 A--ATTATATTTTAT
55259621 AATT
1 AATT
55259625 TTAGTAAATT
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
12 7 0.18
13 14 0.36
14 6 0.15
15 12 0.31
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (13 bp):
AATTATATTTTAT
Found at i:55259928 original size:18 final size:17
Alignment explanation
Indices: 55259900--55259934 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
55259890 ATTATTAAGA
*
55259900 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
55259917 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
55259935 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:55260188 original size:16 final size:16
Alignment explanation
Indices: 55260167--55260199 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
55260157 TTGATTTGCT
*
55260167 ATTACGTCTCTATTCC
1 ATTACGCCTCTATTCC
55260183 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
55260199 A
1 A
55260200 ATACAGCGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.21, C:0.33, G:0.06, T:0.39
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:55260813 original size:21 final size:21
Alignment explanation
Indices: 55260792--55260832 Score: 73
Period size: 22 Copynumber: 1.9 Consensus size: 21
55260782 AATTTTCAAA
55260792 TTTTCAAAATATTTATAAAAAT
1 TTTTCAAAAT-TTTATAAAAAT
55260814 TTTTCAAAATTTTATAAAA
1 TTTTCAAAATTTTATAAAA
55260833 TTATAAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (21 bp):
TTTTCAAAATTTTATAAAAAT
Found at i:55260814 original size:29 final size:28
Alignment explanation
Indices: 55260782--55260899 Score: 80
Period size: 29 Copynumber: 4.1 Consensus size: 28
55260772 ATAATAAGAT
55260782 AATTTTC-AAATTTTCA-AAATATTTATAAA
1 AATTTTCAAAATTTT-ATAAA-A-TTATAAA
55260811 AATTTTTCAAAATTTTATAAAATTATAAA
1 AA-TTTTCAAAATTTTATAAAATTATAAA
* ** * *
55260840 AA-TATCAAAAACTAAAAAAATTATACAA
1 AATTTTCAAAATTTTATAAAATTATA-AA
* * * * *
55260868 AATTCTGAAAATTATATAAAAATGTAAA
1 AATTTTCAAAATTTTATAAAATTATAAA
55260896 AATT
1 AATT
55260900 AAAAATATAT
Statistics
Matches: 70, Mismatches: 14, Indels: 11
0.74 0.15 0.12
Matches are distributed among these distances:
27 18 0.26
28 10 0.14
29 25 0.36
30 7 0.10
31 10 0.14
ACGTcount: A:0.56, C:0.06, G:0.02, T:0.36
Consensus pattern (28 bp):
AATTTTCAAAATTTTATAAAATTATAAA
Found at i:55260888 original size:10 final size:9
Alignment explanation
Indices: 55260804--55260904 Score: 62
Period size: 9 Copynumber: 10.9 Consensus size: 9
55260794 TTCAAAATAT
55260804 TTATAAAAA
1 TTATAAAAA
* *
55260813 TTTTTCAAAA
1 -TTATAAAAA
*
55260823 TTTTATAAAA
1 TTATA-AAAA
55260833 TTATAAAAA
1 TTATAAAAA
55260842 -TATCAAAAA
1 TTAT-AAAAA
* *
55260851 CTAAAAAAA
1 TTATAAAAA
55260860 TTATACAAAA
1 TTATA-AAAA
* *
55260870 TTCTGAAAA
1 TTATAAAAA
55260879 TTATATAAAA
1 TTATA-AAAA
* *
55260889 ATGTAAAAA
1 TTATAAAAA
55260898 TTA-AAAA
1 TTATAAAA
55260905 TATATTTTGA
Statistics
Matches: 71, Mismatches: 15, Indels: 12
0.72 0.15 0.12
Matches are distributed among these distances:
8 7 0.10
9 33 0.46
10 31 0.44
ACGTcount: A:0.60, C:0.05, G:0.02, T:0.33
Consensus pattern (9 bp):
TTATAAAAA
Found at i:55260897 original size:19 final size:19
Alignment explanation
Indices: 55260855--55260900 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
55260845 CAAAAACTAA
*
55260855 AAAAATTATACAAAATTCT
1 AAAAATTATACAAAAATCT
* * *
55260874 GAAAATTATATAAAAATGT
1 AAAAATTATACAAAAATCT
55260893 AAAAATTA
1 AAAAATTA
55260901 AAAATATATT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.61, C:0.04, G:0.04, T:0.30
Consensus pattern (19 bp):
AAAAATTATACAAAAATCT
Found at i:55261035 original size:47 final size:47
Alignment explanation
Indices: 55260966--55261057 Score: 159
Period size: 47 Copynumber: 2.0 Consensus size: 47
55260956 AGTTTACGAT
55260966 ACTAAAATATCTTTTCCTTTGAAA-AAGTTTTAAAATATATACGGTAA
1 ACTAAAATATCTTTTCCTTTGAAATAA-TTTTAAAATATATACGGTAA
*
55261013 ACTAAAATATCTTTTCCTTTGAAATAATTTTACAATATATACGGT
1 ACTAAAATATCTTTTCCTTTGAAATAATTTTAAAATATATACGGT
55261058 GTCAAATTAT
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
47 41 0.95
48 2 0.05
ACGTcount: A:0.40, C:0.12, G:0.08, T:0.40
Consensus pattern (47 bp):
ACTAAAATATCTTTTCCTTTGAAATAATTTTAAAATATATACGGTAA
Found at i:55282701 original size:43 final size:45
Alignment explanation
Indices: 55282514--55282701 Score: 113
Period size: 44 Copynumber: 4.3 Consensus size: 45
55282504 ATTTCTTCTG
*
55282514 TCTATTCCACTGTTGCTCT-GGGAGAT-AGAAT-TACTGGCTTCAA
1 TCTACTCCACTGTTGC-CTAGGGAGATAAGAATCTACTGGCTTCAA
* ** * * * *** **
55282557 TGTACTCCACTGTAACCTCAGGGAGGTAAAAATCCACCATCTTTGA
1 TCTACTCCACTGTTGCCT-AGGGAGATAAGAATCTACTGGCTTCAA
* ** * *
55282603 TCTGCTCCACTACTGCTTAGGGAGATAAG-ATCTGTAAT--CTTCAA
1 TCTACTCCACTGTTGCCTAGGGAGATAAGAATC--TACTGGCTTCAA
*
55282647 TCTATTCCACTGTTGCCTAGGGAGAT-AGAAT-TACTGGCTTCAA
1 TCTACTCCACTGTTGCCTAGGGAGATAAGAATCTACTGGCTTCAA
*
55282690 TGTACTCCACTG
1 TCTACTCCACTG
55282702 CAACCTCAGA
Statistics
Matches: 102, Mismatches: 34, Indels: 18
0.66 0.22 0.12
Matches are distributed among these distances:
41 3 0.03
42 2 0.02
43 30 0.29
44 36 0.35
45 13 0.13
46 18 0.18
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.31
Consensus pattern (45 bp):
TCTACTCCACTGTTGCCTAGGGAGATAAGAATCTACTGGCTTCAA
Found at i:55282979 original size:132 final size:132
Alignment explanation
Indices: 55282812--55283178 Score: 653
Period size: 132 Copynumber: 2.8 Consensus size: 132
55282802 ACGCCAACCG
* * * * * * * *
55282812 GGGAGGTAGAATTACTAGCTTCATTATACTCCACTGCAACTTCAGGGAGGTAAAATCCGTCATCT
1 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCT
*
55282877 TCGATCTGCTCCACTACTGCTTAGGGAGGCAAGATCTGAAATCTCCAATCTATTCCACTATCGCC
66 TTGATCTGCTCCACTACTGCTTAGGGAGGCAAGATCTGAAATCTCCAATCTATTCCACTATCGCC
55282942 TA
131 TA
55282944 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCT
1 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCT
55283009 TTGATCTGCTCCACTACTGCTTAGGGAGGCAAGATCTGAAATCTCCAATCTATTCCACTATCGCC
66 TTGATCTGCTCCACTACTGCTTAGGGAGGCAAGATCTGAAATCTCCAATCTATTCCACTATCGCC
55283074 TA
131 TA
55283076 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCT
1 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCT
55283141 TTGATCTGCTCCACTACTGCTTAGGGAGGCAAGATCTG
66 TTGATCTGCTCCACTACTGCTTAGGGAGGCAAGATCTG
55283179 GATTATCACA
Statistics
Matches: 226, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
132 226 1.00
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.28
Consensus pattern (132 bp):
GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCT
TTGATCTGCTCCACTACTGCTTAGGGAGGCAAGATCTGAAATCTCCAATCTATTCCACTATCGCC
TA
Found at i:55283167 original size:44 final size:44
Alignment explanation
Indices: 55282855--55283178 Score: 142
Period size: 44 Copynumber: 7.4 Consensus size: 44
55282845 CTGCAACTTC
* * * *
55282855 AGGGAGGTAAAATCCGTCATCTTCGATCTGCTCCACTACTGCTT
1 AGGGAGGTAAAATCTGCCATCTTCAATCTACTCCACTACTGCTT
* * ** * * *
55282899 AGGGAGGCAAGATCTGAAATCTCCAATCTATTCCACTA-TCGCCT
1 AGGGAGGTAAAATCTGCCATCTTCAATCTACTCCACTACT-GCTT
* * * *** * *
55282943 AGGGAGATAGAAT-TACTGGCTTCAATGTACTCCACTGTAAC--CTC
1 AGGGAGGTAAAATCTGCCATCTTCAATCTACTCCAC--T-ACTGCTT
** *
55282987 AGGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTT
1 AGGGAGGTAAAATCTGCCATCTTCAATCTACTCCACTACTGCTT
* * ** * * *
55283031 AGGGAGGCAAGATCTGAAATCTCCAATCTATTCCACTA-TCGCCT
1 AGGGAGGTAAAATCTGCCATCTTCAATCTACTCCACTACT-GCTT
* * * *** * *
55283075 AGGGAGATAGAAT-TACTGGCTTCAATGTACTCCACTGTAAC--CTC
1 AGGGAGGTAAAATCTGCCATCTTCAATCTACTCCAC--T-ACTGCTT
** *
55283119 AGGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTT
1 AGGGAGGTAAAATCTGCCATCTTCAATCTACTCCACTACTGCTT
* *
55283163 AGGGAGGCAAGATCTG
1 AGGGAGGTAAAATCTG
55283179 GATTATCACA
Statistics
Matches: 192, Mismatches: 72, Indels: 32
0.65 0.24 0.11
Matches are distributed among these distances:
42 4 0.02
43 32 0.17
44 124 0.65
45 30 0.16
46 2 0.01
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (44 bp):
AGGGAGGTAAAATCTGCCATCTTCAATCTACTCCACTACTGCTT
Found at i:55287806 original size:27 final size:27
Alignment explanation
Indices: 55287423--55287800 Score: 440
Period size: 27 Copynumber: 14.0 Consensus size: 27
55287413 AGGGGTATAA
* *
55287423 CAGTAATTTTACCTTTCGAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
* *
55287450 TAGTTATTTTACCCTTCGAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
*
55287477 C-GATCATTTTACCCTTCGGGGGTATTT
1 CAG-TCATTTTACCCTTCGAGGGTATTT
** *
55287504 TGGTCATTTTACCCTTCAAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
* *
55287531 CAGTCATTTTACCCTTCGAAGATATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
*
55287558 CAGTCATTTTACCCTTCCAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
* * *
55287585 CAGTTATTTTACCCTTCAAGGGTATTC
1 CAGTCATTTTACCCTTCGAGGGTATTT
* *
55287612 CAGTTATTTTACCTTTC-AGGGGTATTT
1 CAGTCATTTTACCCTTCGA-GGGTATTT
** *
55287639 TGGTCATTTTACCCTT-AAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
* *
55287665 CTGTCATTTTACTCTTCGAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
* *
55287692 CAGTTATTTTACCCTTTGAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
* * *
55287719 CGGTCATTTAACCTTTCGAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
*
55287746 CGGTCATTTTACCCTTCGAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
* *
55287773 CGGTTATTTTACCCTTCG-GAGGTATTT
1 CAGTCATTTTACCCTTCGAG-GGTATTT
55287800 C
1 C
55287801 TTTTATATTT
Statistics
Matches: 303, Mismatches: 42, Indels: 12
0.85 0.12 0.03
Matches are distributed among these distances:
26 24 0.08
27 278 0.92
28 1 0.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.44
Consensus pattern (27 bp):
CAGTCATTTTACCCTTCGAGGGTATTT
Found at i:55293392 original size:62 final size:62
Alignment explanation
Indices: 55293282--55293427 Score: 154
Period size: 62 Copynumber: 2.4 Consensus size: 62
55293272 TGTGGTACTG
* * * *
55293282 ATAC-TTCA-AAATTGTCCAATGTGGTACCTGAACAACCAATTGCAGTATTATTTGGCACTT
1 ATACTTTCATAAAATGTCCAATGTGGTACATGAACAACCAATTGCAGTATTATTTAGCACAT
* * * * * * *
55293342 GTACTTTCATAGAATGTCCAATGTGGTACATGAGCTATCAATT-TATGTATTATTTAGTACAT
1 ATACTTTCATAAAATGTCCAATGTGGTACATGAACAACCAATTGCA-GTATTATTTAGCACAT
*
55293404 ATATTTTCATAAAATGTCCAATGT
1 ATACTTTCATAAAATGTCCAATGT
55293428 AATATGTGTA
Statistics
Matches: 69, Mismatches: 14, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
60 3 0.04
61 5 0.07
62 61 0.88
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (62 bp):
ATACTTTCATAAAATGTCCAATGTGGTACATGAACAACCAATTGCAGTATTATTTAGCACAT
Found at i:55295713 original size:92 final size:91
Alignment explanation
Indices: 55295551--55295793 Score: 297
Period size: 92 Copynumber: 2.6 Consensus size: 91
55295541 TGTTCCATAT
* * * * * *
55295551 TAATACAAAGATTGATAGTTCAAGTATCACATTGAACATTTTCAAAGTATAAGTACTACATTGGA
1 TAATACAAAAATTGATAGTTCAAGTACCACATTGGATATTTTCAAAGTATAGGTACCACATTGGA
* *
55295616 TATTTTATGAAAAGTATAAGTACCAAA
66 CATTTTATGAAAA-TACAAGTACCAAA
* * * *
55295643 TAATACAAAAATTAATAGTTCAAGTACCACACTGGATATTTTCAAAGTATAGGTGCCAGATTGGA
1 TAATACAAAAATTGATAGTTCAAGTACCACATTGGATATTTTCAAAGTATAGGTACCACATTGGA
*
55295708 CATTTTATGAAAATACAATTACCAAA
66 CATTTTATGAAAATACAAGTACCAAA
* * * * *
55295734 TAATACACAAATTGATAGTTCAAATACCATATTAGATATTTTGTGAAAGTATAGGTACCA
1 TAATACAAAAATTGATAGTTCAAGTACCACATTGGATA-TTT-TCAAAGTATAGGTACCA
55295794 AATGTGACAT
Statistics
Matches: 128, Mismatches: 21, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
91 43 0.34
92 70 0.55
93 15 0.12
ACGTcount: A:0.43, C:0.12, G:0.13, T:0.32
Consensus pattern (91 bp):
TAATACAAAAATTGATAGTTCAAGTACCACATTGGATATTTTCAAAGTATAGGTACCACATTGGA
CATTTTATGAAAATACAAGTACCAAA
Found at i:55300587 original size:3 final size:3
Alignment explanation
Indices: 55300579--55300611 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
55300569 TATGATTTTA
55300579 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
55300612 TGTAATTATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:55308901 original size:34 final size:34
Alignment explanation
Indices: 55308853--55308926 Score: 103
Period size: 34 Copynumber: 2.2 Consensus size: 34
55308843 TAACAAACTT
* * *
55308853 TAACAAACTCAGCTTTCTACTCCTATTAATAAGC
1 TAACAAACTCAGCTTCCTACTACTACTAATAAGC
* *
55308887 TAACAAACTTAGCTTCCTTCTACTACTAATAAGC
1 TAACAAACTCAGCTTCCTACTACTACTAATAAGC
55308921 TAACAA
1 TAACAA
55308927 TCTCCCTAGA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.38, C:0.26, G:0.05, T:0.31
Consensus pattern (34 bp):
TAACAAACTCAGCTTCCTACTACTACTAATAAGC
Found at i:55311146 original size:76 final size:76
Alignment explanation
Indices: 55311050--55311199 Score: 219
Period size: 76 Copynumber: 2.0 Consensus size: 76
55311040 CTTCTATTCC
* *
55311050 TGAGTGTGCCCTCAAGATATAATTCGTTTTGGACTGTACAATAAACTCCTCAATTTCATTATGAC
1 TGAGTGTGCCCTCAAAATATAATTCGTTTTGGACTATACAATAAACTCCTCAATTTCATTATGAC
55311115 CAATCACTTCT
66 CAATCACTTCT
* * ** ** *
55311126 TGAGTGTGTCCTCAAAATATAATTCTTTTTGGACTATGTAATAAACTTTTCAATTTCATTATGGC
1 TGAGTGTGCCCTCAAAATATAATTCGTTTTGGACTATACAATAAACTCCTCAATTTCATTATGAC
55311191 CAATCACTT
66 CAATCACTT
55311200 AATTTAAAAA
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
76 65 1.00
ACGTcount: A:0.29, C:0.19, G:0.13, T:0.39
Consensus pattern (76 bp):
TGAGTGTGCCCTCAAAATATAATTCGTTTTGGACTATACAATAAACTCCTCAATTTCATTATGAC
CAATCACTTCT
Found at i:55320281 original size:20 final size:20
Alignment explanation
Indices: 55320253--55320298 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
55320243 ATGTACGTAT
*
55320253 ATATATTATACTTTCTATAC
1 ATATATTATAATTTCTATAC
* *
55320273 ATATTTTATAATTTCTATAT
1 ATATATTATAATTTCTATAC
55320293 ATATAT
1 ATATAT
55320299 ATGTAATCAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.37, C:0.09, G:0.00, T:0.54
Consensus pattern (20 bp):
ATATATTATAATTTCTATAC
Found at i:55320295 original size:52 final size:52
Alignment explanation
Indices: 55320236--55320400 Score: 194
Period size: 52 Copynumber: 3.2 Consensus size: 52
55320226 TTTATTAACT
55320236 TATATATATGTACGTATATATATTATACTTTCTATACATATTTTATAATTTC
1 TATATATATGTACGTATATATATTATACTTTCTATACATATTTTATAATTTC
* * * * * *
55320288 TATATATATATATGTA-AT-CATTAT-CTTTATGAT-CTATATATTTATTAACTTA
1 TATATATATGTACGTATATATATTATACTTTCT-ATAC-ATAT-TTTA-TAATTTC
* *
55320340 TATATATATGTACGTATATATTTTATACTTTCCATACATATTTTATAATTTC
1 TATATATATGTACGTATATATATTATACTTTCTATACATATTTTATAATTTC
55320392 TATATATAT
1 TATATATAT
55320401 ATATTTTTCT
Statistics
Matches: 91, Mismatches: 14, Indels: 16
0.75 0.12 0.13
Matches are distributed among these distances:
49 6 0.07
50 11 0.12
51 6 0.07
52 47 0.52
53 6 0.07
54 10 0.11
55 5 0.05
ACGTcount: A:0.35, C:0.09, G:0.04, T:0.52
Consensus pattern (52 bp):
TATATATATGTACGTATATATATTATACTTTCTATACATATTTTATAATTTC
Found at i:55320303 original size:102 final size:104
Alignment explanation
Indices: 55320192--55320404 Score: 394
Period size: 104 Copynumber: 2.1 Consensus size: 104
55320182 TTTTTAAGTT
55320192 TATATATGTAATCATTATCTTTATGATCTATATATTTATTAAC-T-TATATATATGTACGTATAT
1 TATATATGTAATCATTATCTTTATGATCTATATATTTATTAACTTATATATATATGTACGTATAT
*
55320255 ATATTATACTTTCTATACATATTTTATAATTTCTATATA
66 ATATTATACTTTCCATACATATTTTATAATTTCTATATA
55320294 TATATATGTAATCATTATCTTTATGATCTATATATTTATTAACTTATATATATATGTACGTATAT
1 TATATATGTAATCATTATCTTTATGATCTATATATTTATTAACTTATATATATATGTACGTATAT
*
55320359 ATTTTATACTTTCCATACATATTTTATAATTTCTATATA
66 ATATTATACTTTCCATACATATTTTATAATTTCTATATA
55320398 TATATAT
1 TATATAT
55320405 TTTTCTTTAT
Statistics
Matches: 107, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
102 43 0.40
103 1 0.01
104 63 0.59
ACGTcount: A:0.35, C:0.09, G:0.04, T:0.52
Consensus pattern (104 bp):
TATATATGTAATCATTATCTTTATGATCTATATATTTATTAACTTATATATATATGTACGTATAT
ATATTATACTTTCCATACATATTTTATAATTTCTATATA
Found at i:55320400 original size:20 final size:20
Alignment explanation
Indices: 55320354--55320400 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
55320344 TATATGTACG
*
55320354 TATATATTTTATACTTTCCA
1 TATATATTTTATAATTTCCA
* *
55320374 TACATATTTTATAATTTCTA
1 TATATATTTTATAATTTCCA
55320394 TATATAT
1 TATATAT
55320401 ATATTTTTCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.34, C:0.11, G:0.00, T:0.55
Consensus pattern (20 bp):
TATATATTTTATAATTTCCA
Found at i:55320703 original size:13 final size:13
Alignment explanation
Indices: 55320685--55320709 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
55320675 ACAATTGTCG
55320685 TATTTGTTATTGT
1 TATTTGTTATTGT
55320698 TATTTGTTATTG
1 TATTTGTTATTG
55320710 CGACATTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.00, G:0.16, T:0.68
Consensus pattern (13 bp):
TATTTGTTATTGT
Found at i:55327888 original size:44 final size:44
Alignment explanation
Indices: 55327825--55328815 Score: 1120
Period size: 44 Copynumber: 22.5 Consensus size: 44
55327815 GAAAGGCAGC
* * *
55327825 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAAAT
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAAT
* *
55327869 AGATCTTGTCTTCATGTATTGACGTGAAGTAGATCGAAGA-AAGC
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAA-T
*** * ***
55327913 AGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGA-AAGT
1 AGATCTTGTCTTCATGTA-TTGACATGAAGTAGATCGAAGATAA-T
* *** * *
55327958 AGATCTTGTCTTCATGTATCGGTGTGAAGTCGATCGAAGAAAAT
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAAT
** * * *
55328002 AGATCTTGTCTTCATGTATCAACGTGAAGTAGATCGAAGAAAAC
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAAT
* * * * * *
55328046 AGATCTTGTCTTCATGTATCGGCGTGAAGTAGATCGAAAAAAAC
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAAT
* * *
55328090 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAAAT
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAAT
* * * * **
55328134 AAATCTTGTCTTCATGTATTGGCGTGAAGTAGATTGAAGATAGC
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAAT
*** * ***
55328178 AGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAAT
1 AGATCTTGTCTTCATGTA-TTGACATGAAGTAGATCGAAGATAAT
* *
55328223 GGATCTTGTCTTCATGTATTGACATGAAGTAGATC-AGAGATAGT
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGATAAT
55328267 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAAT
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAAT
* **
55328311 GGATCTTGTCTTCATGTATTGACATGAAGTAGATC-AGAGATGGT
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGATAAT
*
55328355 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAGGATAAT
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAAT
* *
55328399 GGATCTTGTCTTCATGTATTGACATGAAGTAGATC-AGAGATAGT
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGATAAT
*
55328443 GGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAAT
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAAT
*
55328487 GGATCTTGTCTTCATGTATTGACATGAAGTAGATC-AGAGATAGCAT
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGATA--AT
*
55328533 -G-TCTTATCTTCATGTATTGACATGAAGTAGATCGAAGATAAT
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAAT
* **
55328575 GGATCTTGTCTTCATGTATTGACATGAAGTAGATC-AGAGATAGC
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGATAAT
* *
55328619 AGATCTTATCTTCATATATTGACATGAAGTAGATCGAAGATAAT
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAAT
**
55328663 AGATCTTGTCTTCATGTATTGACATGAAGTAGATC-AGAGATAGC
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGATAAT
* * * *
55328707 AGATCTTATTTTCATATATTGATATGAAGTAGATCGAAGATAAT
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAAT
* * * * * **
55328751 GGATCTTGTCTTCGTGTATTGACAGGAAGTAGATCAAAGACAGC
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAAT
* *
55328795 AGACCTTGTCTTCCTGTATTG
1 AGATCTTGTCTTCATGTATTG
55328816 GCAGCGAGGA
Statistics
Matches: 830, Mismatches: 97, Indels: 40
0.86 0.10 0.04
Matches are distributed among these distances:
42 2 0.00
43 9 0.01
44 737 0.89
45 80 0.10
46 2 0.00
ACGTcount: A:0.31, C:0.13, G:0.23, T:0.32
Consensus pattern (44 bp):
AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAAT
Found at i:55335030 original size:18 final size:17
Alignment explanation
Indices: 55334997--55335035 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
55334987 TTGTATAAAT
55334997 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
55335015 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
55335032 TGTG
1 TGTG
55335036 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:55335288 original size:23 final size:23
Alignment explanation
Indices: 55335261--55335358 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
55335251 AGTGTTATTG
55335261 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
55335284 TTCAGTGGTAGCTTTGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
55335307 -CCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
55335329 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
55335352 ATCAGTG
1 ATCAGTG
55335359 TGGCACTTAT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
22 20 0.29
23 49 0.71
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:55335327 original size:45 final size:45
Alignment explanation
Indices: 55335263--55335351 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
55335253 TGTTATTGAT
* *
55335263 CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
55335308 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
55335352 ATCAGTGTGG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.19, C:0.22, G:0.27, T:0.31
Consensus pattern (45 bp):
CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
Found at i:55342394 original size:18 final size:17
Alignment explanation
Indices: 55342361--55342399 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
55342351 TTGTATAAAT
55342361 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
55342379 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
55342396 TGTG
1 TGTG
55342400 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:55342652 original size:23 final size:23
Alignment explanation
Indices: 55342625--55342722 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
55342615 AGTGTTATTG
55342625 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
55342648 TTCAGTGGTAGCTTTGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
55342671 -CCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
55342693 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
55342716 ATCAGTG
1 ATCAGTG
55342723 TGGCACTTAT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
22 20 0.29
23 49 0.71
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:55342691 original size:45 final size:45
Alignment explanation
Indices: 55342627--55342715 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
55342617 TGTTATTGAT
* *
55342627 CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
55342672 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
55342716 ATCAGTGTGG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.19, C:0.22, G:0.27, T:0.31
Consensus pattern (45 bp):
CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
Found at i:55348228 original size:41 final size:41
Alignment explanation
Indices: 55348166--55348320 Score: 195
Period size: 41 Copynumber: 3.8 Consensus size: 41
55348156 CGACCTTTTG
* *
55348166 GGGCTTTAACGGCGTTTTTGGAGAAGCGCCGCTAATGTTTA
1 GGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGTTTA
* * *
55348207 GGGCTTTAGCGGCGTTGTTGGAGAAGCACCGCTAATGCTTT-
1 GGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATG-TTTA
* * * *
55348248 GGTCTTTAGCGGCGTTTTTGTAAAAGCGCCGCTAATGCTCA
1 GGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGTTTA
* *
55348289 GGTCTTTAGCGGCGTTTTTGTAAAAGCGCCGC
1 GGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGC
55348321 AAAAACATTT
Statistics
Matches: 102, Mismatches: 10, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
40 1 0.01
41 98 0.96
42 3 0.03
ACGTcount: A:0.18, C:0.20, G:0.31, T:0.31
Consensus pattern (41 bp):
GGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGTTTA
Found at i:55348788 original size:13 final size:13
Alignment explanation
Indices: 55348763--55348800 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
55348753 TGTGATTTAG
*
55348763 GGGTTAAGGGTTA
1 GGGTTTAGGGTTA
55348776 GGGATTT-GGGTTA
1 GGG-TTTAGGGTTA
55348789 GGGTTTAGGGTT
1 GGGTTTAGGGTT
55348801 TAAATTAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
12 3 0.14
13 17 0.77
14 2 0.09
ACGTcount: A:0.16, C:0.00, G:0.47, T:0.37
Consensus pattern (13 bp):
GGGTTTAGGGTTA
Found at i:55348869 original size:7 final size:7
Alignment explanation
Indices: 55348855--55348886 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
55348845 AGGGTTAGTA
55348855 GTTAGGG
1 GTTAGGG
*
55348862 GTTTGGG
1 GTTAGGG
55348869 GTTAGGG
1 GTTAGGG
55348876 GTTAGGG
1 GTTAGGG
55348883 GTTA
1 GTTA
55348887 AGAGTTAGTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.12, C:0.00, G:0.53, T:0.34
Consensus pattern (7 bp):
GTTAGGG
Found at i:55348871 original size:21 final size:21
Alignment explanation
Indices: 55348846--55348885 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
55348836 TAAGGTTTAA
*
55348846 GGGTTAGTAGTTAGGGGTTTG
1 GGGTTAGGAGTTAGGGGTTTG
*
55348867 GGGTTAGGGGTTAGGGGTT
1 GGGTTAGGAGTTAGGGGTT
55348886 AAGAGTTAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.53, T:0.35
Consensus pattern (21 bp):
GGGTTAGGAGTTAGGGGTTTG
Found at i:55348893 original size:21 final size:21
Alignment explanation
Indices: 55348855--55348894 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
55348845 AGGGTTAGTA
** *
55348855 GTTAGGGGTTTGGGGTTAGGG
1 GTTAGGGGTTAAGAGTTAGGG
55348876 GTTAGGGGTTAAGAGTTAG
1 GTTAGGGGTTAAGAGTTAG
55348895 TGATTTAAGG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.17, C:0.00, G:0.50, T:0.33
Consensus pattern (21 bp):
GTTAGGGGTTAAGAGTTAGGG
Found at i:55353744 original size:43 final size:43
Alignment explanation
Indices: 55353696--55353790 Score: 136
Period size: 43 Copynumber: 2.2 Consensus size: 43
55353686 TTCAGGATAC
* * ** *
55353696 TTTATTACCAAGATTTCCTTGATTAAGTAAATGTATTATATCT
1 TTTATTACCAAGATTTACTTGATTAAGAAAATACATTATATAT
*
55353739 TTTATTACCAAGATTTACTTGATTAAGAAAATACATTGTATAT
1 TTTATTACCAAGATTTACTTGATTAAGAAAATACATTATATAT
55353782 TTTATTACC
1 TTTATTACC
55353791 TTGCATATGT
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.35, C:0.12, G:0.08, T:0.45
Consensus pattern (43 bp):
TTTATTACCAAGATTTACTTGATTAAGAAAATACATTATATAT
Found at i:55354112 original size:43 final size:43
Alignment explanation
Indices: 55354064--55354312 Score: 281
Period size: 43 Copynumber: 5.8 Consensus size: 43
55354054 AAGATAAGTT
* *
55354064 TTTAGCGGCGTTTTTGTGAAAAGCGCCGCTAAAGGTTA-TGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGG-TACTGGTC
* * * *
55354107 TTTAGCAGTGTCTGCGGGAAAAAGCGCCGCTAAAGGTTA-TGGT-
1 TTTAGCGGCGTTTGTGGG-AAAAGCGCCGCTAAAGG-TACTGGTC
** * *
55354150 TTATAGCGGCGTTTGTGGGAAAAGCATCGCTAAAGATATTGGTC
1 TT-TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTACTGGTC
* **
55354194 TTTAGCAGCGTTTGTGGGAAAAGCGTTGCTAAAGGTACTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTACTGGTC
* * *
55354237 TATAGCGGCGTTTGT-GGAATAGTGCCGCTAAAGGTACTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTACTGGTC
*
55354279 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCAAAAG
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAG
55354313 TTAGCGACTC
Statistics
Matches: 173, Mismatches: 28, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
42 39 0.23
43 96 0.55
44 38 0.22
ACGTcount: A:0.24, C:0.16, G:0.32, T:0.28
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTACTGGTC
Found at i:55354299 original size:85 final size:84
Alignment explanation
Indices: 55354066--55354312 Score: 298
Period size: 85 Copynumber: 2.9 Consensus size: 84
55354056 GATAAGTTTT
* * * *
55354066 TAGCGGCGTTTTTGTGAAAAGCGCCGCTAAAGGTTATGGTCTTTAGCAGTGTCTGCGGGAAAAAG
1 TAGCGGCGTTTGTG-GAAAAGCGCCGCTAAAGG-TATGGTCTTTAGCAGCGTTTGTGGG-AAAAG
*
55354131 CGCCGCTAAAGGTTATGGTTTA
63 CGCCGCTAAAGGTTATGGTCTA
** *
55354153 TAGCGGCGTTTGTGGGAAAAGCATCGCTAAAGATATTGGTCTTTAGCAGCGTTTGTGGGAAAAGC
1 TAGCGGCGTTTGT-GGAAAAGCGCCGCTAAAGGTA-TGGTCTTTAGCAGCGTTTGTGGGAAAAGC
**
55354218 GTTGCTAAAGG-TACTGGTCTA
64 GCCGCTAAAGGTTA-TGGTCTA
* * *
55354239 TAGCGGCGTTTGTGGAATAGTGCCGCTAAAGGTACTGGTCTTTAGCGGCGTTTGTGGGAAAAGCG
1 TAGCGGCGTTTGTGGAAAAGCGCCGCTAAAGGTA-TGGTCTTTAGCAGCGTTTGTGGGAAAAGCG
*
55354304 CCGCAAAAG
65 CCGCTAAAG
55354313 TTAGCGACTC
Statistics
Matches: 137, Mismatches: 20, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
85 53 0.39
86 36 0.26
87 47 0.34
88 1 0.01
ACGTcount: A:0.24, C:0.16, G:0.32, T:0.28
Consensus pattern (84 bp):
TAGCGGCGTTTGTGGAAAAGCGCCGCTAAAGGTATGGTCTTTAGCAGCGTTTGTGGGAAAAGCGC
CGCTAAAGGTTATGGTCTA
Found at i:55356503 original size:6 final size:6
Alignment explanation
Indices: 55356494--55356518 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
55356484 ATGTATACAT
55356494 ATATAA ATATAA ATATAA ATATAA A
1 ATATAA ATATAA ATATAA ATATAA A
55356519 CCCTAAACCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (6 bp):
ATATAA
Found at i:55357171 original size:22 final size:22
Alignment explanation
Indices: 55357138--55357193 Score: 94
Period size: 22 Copynumber: 2.5 Consensus size: 22
55357128 ATTTCCTCTC
*
55357138 AATTCCTCTCAATTTCCTTCCAA
1 AATT-CTCTCAATTTCATTCCAA
55357161 AATTCTCTCAATTTCATTCCAA
1 AATTCTCTCAATTTCATTCCAA
55357183 AATTCTCTCAA
1 AATTCTCTCAA
55357194 ATCTATATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
22 28 0.88
23 4 0.12
ACGTcount: A:0.30, C:0.30, G:0.00, T:0.39
Consensus pattern (22 bp):
AATTCTCTCAATTTCATTCCAA
Found at i:55357278 original size:51 final size:51
Alignment explanation
Indices: 55357165--55357280 Score: 196
Period size: 51 Copynumber: 2.3 Consensus size: 51
55357155 TTCCAAAATT
* * * *
55357165 CTCTCAATTTCATTCCAAAATTCTCTCAAATCTATATTTAATTTCAATTTG
1 CTCTCAATTTCCTTCAAAAATTCTCTCAAATCCATATTTAATTTCAATTTC
55357216 CTCTCAATTTCCTTCAAAAATTCTCTCAAATCCATATTTAATTTCAATTTC
1 CTCTCAATTTCCTTCAAAAATTCTCTCAAATCCATATTTAATTTCAATTTC
55357267 CTCTCAATTTCCTT
1 CTCTCAATTTCCTT
55357281 TTTTAAAATA
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 61 1.00
ACGTcount: A:0.29, C:0.25, G:0.01, T:0.45
Consensus pattern (51 bp):
CTCTCAATTTCCTTCAAAAATTCTCTCAAATCCATATTTAATTTCAATTTC
Found at i:55358315 original size:7 final size:7
Alignment explanation
Indices: 55358305--55358329 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
55358295 ATTCGATTGA
55358305 TATTTAG
1 TATTTAG
55358312 TATTTAG
1 TATTTAG
55358319 TATTTAG
1 TATTTAG
55358326 TATT
1 TATT
55358330 ATGTATGTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:55359570 original size:20 final size:19
Alignment explanation
Indices: 55359536--55359588 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 19
55359526 TAGTAATAAT
*
55359536 AATAGACAATAATAGTAAC
1 AATAAACAATAATAGTAAC
55359555 AATAAACAAGTAATAGT-AC
1 AATAAACAA-TAATAGTAAC
*
55359574 CATAAAACAATAATA
1 AAT-AAACAATAATA
55359589 ACGTAAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 17 0.57
20 13 0.43
ACGTcount: A:0.60, C:0.11, G:0.08, T:0.21
Consensus pattern (19 bp):
AATAAACAATAATAGTAAC
Found at i:55361130 original size:44 final size:46
Alignment explanation
Indices: 55361078--55361185 Score: 136
Period size: 44 Copynumber: 2.4 Consensus size: 46
55361068 ATAAGACTTT
* *
55361078 TATC-TTCGATCTACTTCGCCACCGA-TATGGGAAGACAATATCTGC
1 TATCTTTCGATCTACTTCACCA-CGAGTATGGGAAGACAAGATCTGC
* *
55361123 T-T-TTTCGATCTACTTCACCACTAGTATGGGAAGACAAGATCTGG
1 TATCTTTCGATCTACTTCACCACGAGTATGGGAAGACAAGATCTGC
55361167 TATCTTT-GATCTACTTCAC
1 TATCTTTCGATCTACTTCAC
55361186 GCCAGTACAT
Statistics
Matches: 55, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
43 2 0.04
44 36 0.65
45 14 0.25
46 3 0.05
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (46 bp):
TATCTTTCGATCTACTTCACCACGAGTATGGGAAGACAAGATCTGC
Found at i:55361226 original size:44 final size:45
Alignment explanation
Indices: 55361080--55361226 Score: 131
Period size: 44 Copynumber: 3.3 Consensus size: 45
55361070 AAGACTTTTA
* * ** *
55361080 TCTTCGATCTACTTCGCCAC-CGATATGGGAAGACAATATCTGCTT
1 TCTTCGATCTACTTCACCACTAG-TACAGGAAGACAAGATCTGCTT
** * *
55361125 T-TTCGATCTACTTCACCACTAGTATGGGAAGACAAGATCTGGTA
1 TCTTCGATCTACTTCACCACTAGTACAGGAAGACAAGATCTGCTT
* * *
55361169 TCTTTGATCTACTTCACGC-C-AGTACATGAAGACAAGATCTACTT
1 TCTTCGATCTACTTCAC-CACTAGTACAGGAAGACAAGATCTGCTT
*
55361213 TCTTCGATATACTT
1 TCTTCGATCTACTT
55361227 TTCACTGCCG
Statistics
Matches: 85, Mismatches: 14, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
44 67 0.79
45 17 0.20
46 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.33
Consensus pattern (45 bp):
TCTTCGATCTACTTCACCACTAGTACAGGAAGACAAGATCTGCTT
Found at i:55361407 original size:132 final size:132
Alignment explanation
Indices: 55361247--55362636 Score: 1857
Period size: 132 Copynumber: 10.5 Consensus size: 132
55361237 ACCGGGGGGA
* * *
55361247 TAGAATTACTGGCTTCAATATACTCCACTGCAACCTCAGGGAGGTAAAATCTGCCATCTTTGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTCGATC
* * * * *
55361312 TGCTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCTGCTGCTGTCCAGGGA
66 TGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGCCCAGGGA
55361377 AG
131 AG
* *
55361379 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTTGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTCGATC
* * * *
55361444 TGCTCCACTACTGCTTAAGGAGACAAGATCTGAAATATTCAATCTATTCCGTTGCTGTCCAGGGA
66 TGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGCCCAGGGA
55361509 AG
131 AG
* * * * *
55361511 TAGAATCACTGGCTTCAATGTACTCCACTGTAACCACATGGAGGTAAAATCTGCCATCTTTGATT
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTCGATC
* * *
55361576 TGCTCCACTATTGCTTAAGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGTCCAGGGA
66 TGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGCCCAGGGA
55361641 AG
131 AG
*
55361643 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTACCATCTTCGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTCGATC
* * * * *
55361708 TGCTTCACTA-T-CTATGCAGGAAGGCAAGATCTGAAATCTTTAATCTATTCCACTGCTGCCCAG
66 TGCTCCACTACTGCT-T--AGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGCCCAG
55361771 GGAAG
128 GGAAG
*
55361776 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTACCATCTTCGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTCGATC
* * * *
55361841 TACTTCACTA-T-CTATGCAGGAAGGCAAGATCTGAAATCTTCAATCTATTCCGCTGCTGCCCAG
66 TGCTCCACTACTGCT-T--AGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGCCCAG
55361904 GGAAG
128 GGAAG
* * * * *
55361909 TAGAATTACTGGCTTTAATGTACTCCACTGTAACCACAGAGAGGTAAAAT-TCACCATCTTTGAT
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCT-GCCATCTTCGAT
* * * * *
55361973 CTGCTCCACTACTGCTTGGGGAGACAAGATCTAAAATCTTCAATCTATTCCACTGCTGACCGGGG
65 CTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGCCCAGGG
55362038 AAG
130 AAG
*
55362041 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCTTCGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTCGATC
* * * * *
55362106 TGCTCTACTACTTCTTAGGGAGACAAGATCTGAAATATTCAATCTATTCCACTGCCGCCCAGGG-
66 TGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGCCCAGGGA
55362170 AG
131 AG
* * ** *
55362172 ATAGAATTATTGGCTTCAATGTACTCCATTGTAACCTCAGGGAGGTAAAATCCACCATCTTTGAT
1 -TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTCGAT
* ** * *
55362237 CTACTCGTCTACTGCTTAGGGAGATAAGATCTG--TTCTTCAATCTATTCCGCTGCTGCCCAGGG
65 CTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGCCCAGGG
55362300 AAG
130 AAG
* * * *
55362303 TAGAATTACTGGCTTCAACGTACTCCACTGCAACTTCAGGGAGGTAAAATCCGCCATCTTCGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTCGATC
* * * *
55362368 TGCTCCACTACTGCTTAGGGAGGCAAGATCTGAAATCTTCAGTCTATTCCGCTACTGGCCAGGGA
66 TGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGCCCAGGGA
55362433 AG
131 AG
* * *
55362435 TAGAATTACTGGCTTCAATGTACTCCACTGCAACTTCAAGGAGGTAAAATCTGCCATCTTCGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTCGATC
* * * * * * * *
55362500 TGCTCCGCT-GT-CTATGCAGGAAGGCAAGATTTGAAATCTTCAATCTATTTCACTGCTGCCCAA
66 TGCTCCACTACTGCT-T--AGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGCCCAG
55362563 GGAAG
128 GGAAG
* * * *
55362568 TAGAATTACTAGCTTCAATGTACTCCACTGTAACCAC-GAGGAGGTAAAATCCGCCATCTTGGAT
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAG-GGAGGTAAAATCTGCCATCTTCGAT
55362632 CTGCT
65 CTGCT
55362637 TCGCTGTTAT
Statistics
Matches: 1135, Mismatches: 108, Indels: 29
0.89 0.08 0.02
Matches are distributed among these distances:
130 115 0.10
131 8 0.01
132 662 0.58
133 346 0.30
134 2 0.00
135 2 0.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.28
Consensus pattern (132 bp):
TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTCGATC
TGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGCCCAGGGA
AG
Found at i:55362003 original size:265 final size:264
Alignment explanation
Indices: 55361247--55362682 Score: 1858
Period size: 265 Copynumber: 5.4 Consensus size: 264
55361237 ACCGGGGGGA
* * * *
55361247 TAGAATTACTGGCTTCAATATACTCCACTGCAACCTCAGGGAGGTAAAATCTGCCATCTTTGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCTTCGATC
* * * *
55361312 TGCTCCACTAC-TGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCTGCTGCTGTCCAGGG
66 TGCTCCACTACTTG-CTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGCCCAGGG
*
55361376 AAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTTG
130 AAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTACCATCTTTG
** * ** *
55361441 ATCTGCTCCACTACTGCTTAAGGAGACAAGATCTGAAATATTCAATCTATTCCGTTGCTGTCCAG
195 ATCTGCTCCACTACTGCTTGGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAG
55361506 GGAAG
260 GGAAG
* * * * * *
55361511 TAGAATCACTGGCTTCAATGTACTCCACTGTAACCACATGGAGGTAAAATCTGCCATCTTTGATT
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCTTCGATC
* *
55361576 TGCTCCACTA-TTGCTTAAGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGTCCAGGG
66 TGCTCCACTACTTGC-TAGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGCCCAGGG
* *
55361640 AAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTACCATCTTCG
130 AAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTACCATCTTTG
* * * *
55361705 ATCTGCTTCACTA-T-CTATGCAGGAAGGCAAGATCTGAAATCTTTAATCTATTCCACTGCTGCC
195 ATCTGCTCCACTACTGCT-TG--GGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCC
55361768 CAGGGAAG
257 CAGGGAAG
**
55361776 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTACCATCTTCGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCTTCGATC
* * * *
55361841 TACTTCACTATCTATGC-AGGAAGGCAAGATCTGAAATCTTCAATCTATTCCGCTGCTGCCCAGG
66 TGCTCCACTA-CT-TGCTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGCCCAGG
* *
55361905 GAAGTAGAATTACTGGCTTTAATGTACTCCACTGTAACCACAGAGAGGTAAAAT-TCACCATCTT
129 GAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCT-ACCATCTT
* *
55361969 TGATCTGCTCCACTACTGCTTGGGGAGACAAGATCTAAAATCTTCAATCTATTCCACTGCTGACC
193 TGATCTGCTCCACTACTGCTTGGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCC
*
55362034 GGGGAAG
258 AGGGAAG
55362041 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCTTCGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCTTCGATC
* * * *
55362106 TGCTCTACTACTT-CTTAGGGAGACAAGATCTGAAATATTCAATCTATTCCACTGCCGCCCAGGG
66 TGCTCCACTACTTGC-TAGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGCCCAGGG
* * * *
55362170 -AGATAGAATTATTGGCTTCAATGTACTCCATTGTAACCTCAGGGAGGTAAAATCCACCATCTTT
130 AAG-TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTACCATCTTT
* ** * * * *
55362234 GATCTACTCGTCTACTGCTTAGGGAGATAAGATCTG--TTCTTCAATCTATTCCGCTGCTGCCCA
194 GATCTGCTCCACTACTGCTTGGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCA
55362297 GGGAAG
259 GGGAAG
* * *
55362303 TAGAATTACTGGCTTCAACGTACTCCACTGCAACTTCAGGGAGGTAAAATCCGCCATCTTCGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCTTCGATC
* * * *
55362368 TGCTCCACTAC-TGCTTAGGGAGGCAAGATCTGAAATCTTCAGTCTATTCCGCTACTGGCCAGGG
66 TGCTCCACTACTTGC-TAGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGCCCAGGG
* ** * * *
55362432 AAGTAGAATTACTGGCTTCAATGTACTCCACTGCAACTTCAAGGAGGTAAAATCTGCCATCTTCG
130 AAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTACCATCTTTG
* * * * * *
55362497 ATCTGCTCCGCT-GT-CTATGCAGGAAGGCAAGATTTGAAATCTTCAATCTATTTCACTGCTGCC
195 ATCTGCTCCACTACTGCT-TG--GGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCC
*
55362560 CAAGGAAG
257 CAGGGAAG
* * *
55362568 TAGAATTACTAGCTTCAATGTACTCCACTGTAACCAC-GAGGAGGTAAAATCCGCCATCTTGGAT
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAG-GGAGGTAAAATCCGCCATCTTCGAT
* * ** * * *
55362632 CTGCTTCGCTGTTATGC-AGGAAGGCAAGATCTGAAATCTTCAACCTATTCC
65 CTGCTCCACTACT-TGCTAGGGAGACAAGATCTGAAATCTTCAATCTATTCC
55362683 ACTGTCTCCG
Statistics
Matches: 1030, Mismatches: 117, Indels: 49
0.86 0.10 0.04
Matches are distributed among these distances:
260 2 0.00
261 3 0.00
262 211 0.20
263 19 0.02
264 320 0.31
265 348 0.34
266 115 0.11
267 7 0.01
268 5 0.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.28
Consensus pattern (264 bp):
TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCTTCGATC
TGCTCCACTACTTGCTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGCCCAGGGA
AGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTACCATCTTTGA
TCTGCTCCACTACTGCTTGGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGG
GAAG
Found at i:55369125 original size:20 final size:19
Alignment explanation
Indices: 55369091--55369143 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 19
55369081 TAGTAATAAT
*
55369091 AATAGACAATAATAGTAAC
1 AATAAACAATAATAGTAAC
55369110 AATAAACAAGTAATAGT-AC
1 AATAAACAA-TAATAGTAAC
*
55369129 CATAAAACAATAATA
1 AAT-AAACAATAATA
55369144 ACGTAAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 17 0.57
20 13 0.43
ACGTcount: A:0.60, C:0.11, G:0.08, T:0.21
Consensus pattern (19 bp):
AATAAACAATAATAGTAAC
Found at i:55371337 original size:44 final size:45
Alignment explanation
Indices: 55371288--55371374 Score: 133
Period size: 44 Copynumber: 2.0 Consensus size: 45
55371278 ATATTTTGAA
*
55371288 TATTTTGATATTATTTTATGTAA-AAGAATAGAAATTT-TTTGAGT
1 TATTTTGATATTATTTGATGTAATAA-AATAGAAATTTATTTGAGT
*
55371332 TATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGA
1 TATTTTGATATTATTTGATGTAATAAAATAGAAATTTATTTGA
55371375 TGTAATAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
44 32 0.82
45 7 0.18
ACGTcount: A:0.37, C:0.00, G:0.14, T:0.49
Consensus pattern (45 bp):
TATTTTGATATTATTTGATGTAATAAAATAGAAATTTATTTGAGT
Found at i:55371432 original size:23 final size:23
Alignment explanation
Indices: 55371380--55372378 Score: 703
Period size: 23 Copynumber: 41.5 Consensus size: 23
55371370 TTTGATGTAA
*
55371380 TAAAAACCCTAACCTAATTTAAC
1 TAAAAACCCTAACCTAATTTAAT
*** * *
55371403 CCTAAACTCTAACCTAAATTAAT
1 TAAAAACCCTAACCTAATTTAAT
*
55371426 TAAAAACCCAAAACTCTTAATTTAATTTAAT
1 TAAAAACCC-TAAC-C-----T-AATTTAAT
*
55371457 TAAAAACCCTAGCCTAATTTAAT
1 TAAAAACCCTAACCTAATTTAAT
*
55371480 TAAAAACCTTAACCTAATTTAAT
1 TAAAAACCCTAACCTAATTTAAT
55371503 TAAAAACCCTAAACCCTTAA-TTAA-
1 TAAAAACCCT-AA-CC-TAATTTAAT
55371527 -AAACCCTAACCCTAACCTAATTTAAT
1 TAAA----AACCCTAACCTAATTTAAT
55371553 TAAAAACCCTAACCTAATTTAAT
1 TAAAAACCCTAACCTAATTTAAT
*
55371576 TAAAAACCCTAGCCTAATTTAAT
1 TAAAAACCCTAACCTAATTTAAT
55371599 TAAAAACCCTAAACC---TTTAAT
1 TAAAAACCCT-AACCTAATTTAAT
55371620 TAAAAACCCTAACCCTAACCTAATTTAAT
1 T--AAA----AACCCTAACCTAATTTAAT
*
55371649 TAAAAACCCTAAACTCTTATTTAA-
1 TAAAAACCCT-AAC-CTAATTTAAT
55371673 -AAACCCTAACCCTAACCTAATTTAAT
1 TAAA----AACCCTAACCTAATTTAAT
*
55371699 TAAAAACCCTAAACC---CTTAACT
1 TAAAAACCCT-AACCTAATTTAA-T
*
55371721 TAAAAACCCTAGCCTAATTTAAT
1 TAAAAACCCTAACCTAATTTAAT
* *
55371744 TAAAAACCTTAAACC---CTTAAT
1 TAAAAACCCT-AACCTAATTTAAT
*
55371765 TAAAAAACCTTAACCTAATTTAAT
1 T-AAAAACCCTAACCTAATTTAAT
*
55371789 TAAAAACCCTAGCCTAATTTAAT
1 TAAAAACCCTAACCTAATTTAAT
*
55371812 TAAAAACCTTAAACCCTTAA-TTAA-
1 TAAAAACCCT-AA-CC-TAATTTAAT
55371836 -AAACCCTAACCCTAACCTAATTTAAT
1 TAAA----AACCCTAACCTAATTTAAT
*
55371862 TAAAAACCCTAAACC---CTTAACT
1 TAAAAACCCT-AACCTAATTTAA-T
*
55371884 TAAAAATCCTAACCTAATTTAAT
1 TAAAAACCCTAACCTAATTTAAT
*
55371907 TAAAAACCCTAGCCTAATTTAAT
1 TAAAAACCCTAACCTAATTTAAT
*
55371930 TAAAAACCCTAAACCCTTAA-TTAAA
1 TAAAAACCCT-AA-CC-TAATTTAAT
*
55371955 AAACACTAACCCTAACCCTAACCTAATTTAAT
1 TAA-A--AACCCTAA-CCT-A----ATTTAAT
*
55371987 TAAAAACCCTAAACC---CTTAACT
1 TAAAAACCCT-AACCTAATTTAA-T
55372009 TAAAAACCCTAACCTAATTTAAT
1 TAAAAACCCTAACCTAATTTAAT
* *
55372032 TAAAAACCCTAGCCTAATTTAAA
1 TAAAAACCCTAACCTAATTTAAT
* *
55372055 TAAAAACCCTAAACCCTTAGTTAA-
1 TAAAAACCCT-AA-CCTAATTTAAT
*
55372079 -AAACCCTAACCCTAATCTAATTTAAT
1 TAAA----AACCCTAACCTAATTTAAT
55372105 TAAAAACCCTAAACCTAATTTAAT
1 TAAAAACCCT-AACCTAATTTAAT
55372129 TAAAAACCCTAACCTAATTTAAT
1 TAAAAACCCTAACCTAATTTAAT
*
55372152 TAAAAACCCTAGCCTAATTTAAT
1 TAAAAACCCTAACCTAATTTAAT
* * *
55372175 TAGAAACCCTAAACCATTAATTAAAAA
1 TAAAAACCCT-AACC--TAATT-TAAT
***
55372202 TCCTAACCCTAACCTAATTTAAT
1 TAAAAACCCTAACCTAATTTAAT
* *
55372225 TAAAAACCTTAGCCTAATTTAAT
1 TAAAAACCCTAACCTAATTTAAT
* *
55372248 TATAAACCCTAAACC---CTTAACT
1 TAAAAACCCT-AACCTAATTTAA-T
55372270 TAAAAACCCTAACCTAATTTAAT
1 TAAAAACCCTAACCTAATTTAAT
** *
55372293 TAAAAATTCTAGCCTAATTTAAT
1 TAAAAACCCTAACCTAATTTAAT
55372316 TAAAAACCCTAAACCCTTAA-TTAA-
1 TAAAAACCCT-AA-CC-TAATTTAAT
55372340 -AAACCCTAACCCTAACCTAATTTAACT
1 TAAA----AACCCTAACCTAATTTAA-T
55372367 TAAAAACCCTAA
1 TAAAAACCCTAA
55372379 ACCCTTAACT
Statistics
Matches: 788, Mismatches: 81, Indels: 213
0.73 0.07 0.20
Matches are distributed among these distances:
21 48 0.06
22 51 0.06
23 357 0.45
24 99 0.13
25 76 0.10
26 38 0.05
27 65 0.08
28 9 0.01
29 16 0.02
30 5 0.01
31 18 0.02
32 6 0.01
ACGTcount: A:0.46, C:0.24, G:0.01, T:0.29
Consensus pattern (23 bp):
TAAAAACCCTAACCTAATTTAAT
Found at i:55371440 original size:30 final size:31
Alignment explanation
Indices: 55371400--55371465 Score: 89
Period size: 31 Copynumber: 2.2 Consensus size: 31
55371390 AACCTAATTT
*
55371400 AACCCTAAACTC-TAACCTAAATTAATTAAA
1 AACCCAAAACTCTTAACCTAAATTAATTAAA
** *
55371430 AACCCAAAACTCTTAATTTAATTTAATTAAA
1 AACCCAAAACTCTTAACCTAAATTAATTAAA
55371461 AACCC
1 AACCC
55371466 TAGCCTAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
30 11 0.35
31 20 0.65
ACGTcount: A:0.48, C:0.23, G:0.00, T:0.29
Consensus pattern (31 bp):
AACCCAAAACTCTTAACCTAAATTAATTAAA
Found at i:55371493 original size:77 final size:73
Alignment explanation
Indices: 55371378--55372160 Score: 401
Period size: 68 Copynumber: 10.8 Consensus size: 73
55371368 TATTTGATGT
**** * *
55371378 AATAAAAACCCTAACCTAATTTAACCCTAAA-CTCTAACCTAAATTAATTAAAAACCCAAAACTC
1 AATAAAAACCCTAACCTAATTTAATTAAAAACCT-TAACCTAATTTAATTAAAAACCCAAAACCC
55371442 TTAATTTAATTTA
65 TTAA-TTAA---A
* * *
55371455 ATTAAAAACCCTAGCCTAATTTAATTAAAAACCTTAACCTAATTTAATTAAAAACCCTAAACCCT
1 AATAAAAACCCTAACCTAATTTAATTAAAAACCTTAACCTAATTTAATTAAAAACCCAAAACCCT
55371520 TAATTAAA
66 TAATTAAA
**** * * *
55371528 AACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCTAATTTAATTAAAAACCC--TAGCC-
1 AATAAAAACCCTAACCTAATTTAATTAAAAACCTTAACCTAATTTAATTAAAAACCCAAAACCCT
*
55371590 TAATT-TA
66 TAATTAAA
* *
55371597 ATTAAAAACCCTAAACC---TTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCT
1 AATAAAAACCCT-AACCTAATTTAATTAAAAA-CCT-----TAACCTAATTTAATTAAAAACCCA
* *
55371659 AAACTCTTATTTAAA
59 AAACCCTTAATTAAA
**** * * * *
55371674 AACCCTAACCCTAACCTAATTTAATTAAAAACCCTAAACC---CTTAACTTAAAAACCC--TAGC
1 AATAAAAACCCTAACCTAATTTAATTAAAAA-CCTTAACCTAATTTAA-TTAAAAACCCAAAACC
*
55371734 C-TAATT-TA
64 CTTAATTAAA
* * * * *
55371742 ATTAAAAACCTTAAACC---CTTAATTAAAAAACCTTAACCTAATTTAATTAAAAACCC--TAGC
1 AATAAAAACCCT-AACCTAATTTAATT-AAAAACCTTAACCTAATTTAATTAAAAACCCAAAACC
*
55371802 C-TAATT-TA
64 CTTAATTAAA
* * * *
55371810 ATTAAAAACCTTAAACCCTTAA-TTAA--AAACCCTAACCCTAACCTAATTTAATTAAAAACCCT
1 AATAAAAACCCT-AA-CC-TAATTTAATTAAA----AACCTTAACCTAATTTAATTAAAAACCCA
55371872 AAACCCTTAACTTAAA
59 AAACCCTTAA-TTAAA
* * *
55371888 AAT------CCTAACCTAATTTAATTAAAAACCCTAGCCTAATTTAATTAAAAACCCTAAACCCT
1 AATAAAAACCCTAACCTAATTTAATTAAAAACCTTAACCTAATTTAATTAAAAACCCAAAACCCT
55371947 TAATTAAAAA
66 TAATT--AAA
* * *
55371957 ACACTAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAAACC---CTTAACTTAAAAACCC-
1 A-A-TAA---AAACCCTAACCTAATTTAATTAAAAA-CCTTAACCTAATTTAA-TTAAAAACCCA
* *
55372018 TAA-CC-TAATT-TA
59 AAACCCTTAATTAAA
* * * * * * *
55372030 ATTAAAAACCCTAGCCTAATTTAAATAAAAACCCTAAACC---CTTAGTTAAAAACCC-TAACCC
1 AATAAAAACCCTAACCTAATTTAATTAAAAA-CCTTAACCTAATTTAATTAAAAACCCAAAACCC
55372091 -TAATCTAATTTA
65 TTAAT-TAA---A
* *
55372103 ATTAAAAACCCTAAACCTAATTTAATTAAAAACCCTAACCTAATTTAATTAAAAACCC
1 AATAAAAACCCT-AACCTAATTTAATTAAAAACCTTAACCTAATTTAATTAAAAACCC
55372161 TAGCCTAATT
Statistics
Matches: 567, Mismatches: 76, Indels: 127
0.74 0.10 0.16
Matches are distributed among these distances:
66 13 0.02
67 32 0.06
68 126 0.22
69 33 0.06
70 18 0.03
71 13 0.02
72 19 0.03
73 122 0.22
74 21 0.04
75 5 0.01
76 33 0.06
77 68 0.12
78 11 0.02
79 26 0.05
80 22 0.04
81 5 0.01
ACGTcount: A:0.46, C:0.24, G:0.01, T:0.28
Consensus pattern (73 bp):
AATAAAAACCCTAACCTAATTTAATTAAAAACCTTAACCTAATTTAATTAAAAACCCAAAACCCT
TAATTAAA
Found at i:55371826 original size:30 final size:29
Alignment explanation
Indices: 55371792--55371878 Score: 84
Period size: 29 Copynumber: 3.2 Consensus size: 29
55371782 ATTTAATTAA
*
55371792 AAACCCTAGCCTAATTTAATTAAAAACCTT
1 AAACCCTA-CCTAATTTAATTAAAAACCCT
55371822 AAA--C--CC---TT-AATTAAAAACCCT
1 AAACCCTACCTAATTTAATTAAAAACCCT
55371843 -AACCCTAACCTAATTTAATTAAAAACCCT
1 AAACCCT-ACCTAATTTAATTAAAAACCCT
55371872 AAACCCT
1 AAACCCT
55371879 TAACTTAAAA
Statistics
Matches: 46, Mismatches: 1, Indels: 20
0.69 0.01 0.30
Matches are distributed among these distances:
20 2 0.04
21 12 0.26
22 3 0.07
25 4 0.09
28 3 0.07
29 13 0.28
30 9 0.20
ACGTcount: A:0.45, C:0.28, G:0.01, T:0.26
Consensus pattern (29 bp):
AAACCCTACCTAATTTAATTAAAAACCCT
Found at i:55371980 original size:57 final size:57
Alignment explanation
Indices: 55371911--55372022 Score: 190
Period size: 57 Copynumber: 2.0 Consensus size: 57
55371901 TTTAATTAAA
*
55371911 AACCCTAGCCTAATTTAATTAAAAACCCTAAACCCTTAA-TTAAAAAACACTAACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCTAAACCCTTAACTT-AAAAACACTAACCCT
*
55371968 AACCCTAACCTAATTTAATTAAAAACCCTAAACCCTTAACTTAAAAACCCTAACC
1 AACCCTAACCTAATTTAATTAAAAACCCTAAACCCTTAACTTAAAAACACTAACC
55372023 TAATTTAATT
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
57 50 0.96
58 2 0.04
ACGTcount: A:0.46, C:0.29, G:0.01, T:0.24
Consensus pattern (57 bp):
AACCCTAACCTAATTTAATTAAAAACCCTAAACCCTTAACTTAAAAACACTAACCCT
Found at i:55372025 original size:243 final size:236
Alignment explanation
Indices: 55371484--55372232 Score: 888
Period size: 243 Copynumber: 3.1 Consensus size: 236
55371474 TTTAATTAAA
*
55371484 AACCTTAACCTAATTTAATTAAAAACCCTAAACCCTTAATTAAAAACCCTAACCCTAACCTAATT
1 AACCCTAACCTAATTTAATTAAAAACCCTAAACCCTTAATT-AAAA----AACCCTAACCTAATT
* * * *
55371549 TAATTAAAAACCCTAACCTAATTTAATTAAAAACCCT-AGCCTAATTTAATTAAAAACCCT-A--
61 TAATTAAAAACCCTAGCCTAATTTAAATAAAAACCCTAAACC---CTTAATTAAAAACCCTAACC
* *
55371610 --AACC---TTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAAACTCTTATT
123 CTAACCTAATTTAATTAAAAACCCT-A----AACC--ACTTAATTAAAAACCCT-AAC-CTAATT
* *
55371670 TAA--AAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTTAACTT--AAA----
179 TAATTAAA----AACCCTAGCCTAATTTAATTAAAAACCCTAAACCATTAA-TTAAAAATCCT
* * *
55371725 AACCCTAGCCTAATTTAATTAAAAACCTTAAACCCTTAATTAAAAAACCTTAACCTAATTTAATT
1 AACCCTAACCTAATTTAATTAAAAACCCTAAACCCTTAATTAAAAAACCCTAACCTAATTTAATT
* *
55371790 AAAAACCCTAGCCTAATTTAATTAAAAACCTTAAACCCTTAATTAAAAACCCTAACCCTAACCTA
66 AAAAACCCTAGCCTAATTTAAATAAAAACCCTAAACCCTTAATTAAAAACCCTAACCCTAACCTA
*
55371855 ATTTAATTAAAAACCCTAAACC-CTTAACTTAAAAATCCTAACCTAATTTAATTAAAAACCCTAG
131 ATTTAATTAAAAACCCTAAACCACTTAA-TTAAAAACCCTAACCTAATTTAATTAAAAACCCTAG
*
55371919 CCTAATTTAATTAAAAACCCTAAACCCTTAATTAAAAAACACTAACCCT
195 CCTAATTTAATTAAAAACCCTAAACCATTAATT--AAAA-A-T---CCT
55371968 AACCCTAACCTAATTTAATTAAAAACCCTAAACCCTTAACTT-AAAAACCCTAACCTAATTTAAT
1 AACCCTAACCTAATTTAATTAAAAACCCTAAACCCTTAA-TTAAAAAACCCTAACCTAATTTAAT
* *
55372032 TAAAAACCCTAGCCTAATTTAAATAAAAACCCTAAACCCTTAGTTAAAAACCCTAACCCTAATCT
65 TAAAAACCCTAGCCTAATTTAAATAAAAACCCTAAACCCTTAATTAAAAACCCTAACCCTAACCT
*
55372097 AATTTAATTAAAAACCCTAAACCTAATTTAATTAAAAACCCTAACCTAATTTAATTAAAAACCCT
130 AATTTAATTAAAAACCCTAAACC--ACTTAATTAAAAACCCTAACCTAATTTAATTAAAAACCCT
*
55372162 AGCCTAATTTAATTAGAAACCCTAAACCATTAATTAAAAATCCT
193 AGCCTAATTTAATTAAAAACCCTAAACCATTAATTAAAAATCCT
55372206 AACCCTAACCTAATTTAATTAAAAACC
1 AACCCTAACCTAATTTAATTAAAAACC
55372233 TTAGCCTAAT
Statistics
Matches: 456, Mismatches: 23, Indels: 61
0.84 0.04 0.11
Matches are distributed among these distances:
230 2 0.00
231 38 0.08
233 8 0.02
234 24 0.05
235 15 0.03
236 49 0.11
237 7 0.02
238 30 0.07
239 4 0.01
240 4 0.01
241 40 0.09
242 17 0.04
243 146 0.32
244 2 0.00
245 66 0.14
246 4 0.01
ACGTcount: A:0.46, C:0.25, G:0.01, T:0.28
Consensus pattern (236 bp):
AACCCTAACCTAATTTAATTAAAAACCCTAAACCCTTAATTAAAAAACCCTAACCTAATTTAATT
AAAAACCCTAGCCTAATTTAAATAAAAACCCTAAACCCTTAATTAAAAACCCTAACCCTAACCTA
ATTTAATTAAAAACCCTAAACCACTTAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAGC
CTAATTTAATTAAAAACCCTAAACCATTAATTAAAAATCCT
Found at i:55372121 original size:29 final size:29
Alignment explanation
Indices: 55372075--55372152 Score: 96
Period size: 24 Copynumber: 2.9 Consensus size: 29
55372065 AAACCCTTAG
*
55372075 TTAAAAACCCTAACCCTAATCTAATTTAA
1 TTAAAAACCCTAAACCTAATCTAATTTAA
55372104 TTAAAAACCCTAAA-C----CTAATTTAA
1 TTAAAAACCCTAAACCTAATCTAATTTAA
*
55372128 TTAAAAACCCT-AACCTAATTTAATT
1 TTAAAAACCCTAAACCTAATCTAATT
55372153 AAAAACCCTA
Statistics
Matches: 42, Mismatches: 2, Indels: 11
0.76 0.04 0.20
Matches are distributed among these distances:
23 2 0.05
24 21 0.50
28 6 0.14
29 13 0.31
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (29 bp):
TTAAAAACCCTAAACCTAATCTAATTTAA
Found at i:55372232 original size:73 final size:72
Alignment explanation
Indices: 55371448--55372377 Score: 711
Period size: 73 Copynumber: 13.0 Consensus size: 72
55371438 ACTCTTAATT
* * * *
55371448 TAATTTAATTAAAAACCCT--AGCC-TAATTTAATTAAAAACCTTAACCTAATTTAATTAAAAAC
1 TAATTTAATTAAAAACCCTAAACCCTTAATTAAAATAAAAACCCTAACCTAATTTAATTAAAAAC
*
55371510 CCTAAACC
66 CCT-AGCC
* * *
55371518 ---CTTAATTAAAAACCCT-AACCCTAACCTAATTTAATTAAAAACCCTAACCTAATTTAATTAA
1 TAATTTAATTAAAAACCCTAAACCCT----TAATTAAAATAAAAACCCTAACCTAATTTAATTAA
55371579 AAACCCTAGCC
62 AAACCCTAGCC
* **
55371590 TAATTTAATTAAAAACCCTAAACCTTTAATTAAAA-ACCCTAACCCTAACCTAATTTAATTAAAA
1 TAATTTAATTAAAAACCCTAAACCCTTAATTAAAATA--AAAACCCTAACCTAATTTAATTAAAA
**
55371654 ACCCTAAAC
64 ACCCTAGCC
* * * * *
55371663 T--CTTATTTAAAAACCCT-AACCCTAACCTAATTTAATTAAAAACCCTAAACC---CTTAACTT
1 TAATTTAATTAAAAACCCTAAACCCT----TAATTAAAATAAAAACCCT-AACCTAATTTAA-TT
55371722 AAAAACCCTAGCC
60 AAAAACCCTAGCC
* *
55371735 TAATTTAATTAAAAACCTTAAACCCTTAATT---A-AAAAACCTTAACCTAATTTAATTAAAAAC
1 TAATTTAATTAAAAACCCTAAACCCTTAATTAAAATAAAAACCCTAACCTAATTTAATTAAAAAC
55371796 CCTAGCC
66 CCTAGCC
* **
55371803 TAATTTAATTAAAAACCTTAAACCCTTAATTAAAA-ACCCTAACCCTAACCTAATTTAATTAAAA
1 TAATTTAATTAAAAACCCTAAACCCTTAATTAAAATA--AAAACCCTAACCTAATTTAATTAAAA
*
55371867 ACCCTAAACC
64 ACCCT-AGCC
* * * * *
55371877 ---CTTAACTTAAAAATCCT-AA-CC-TAATTTAATTAAAAACCCTAGCCTAATTTAATTAAAAA
1 TAATTTAA-TTAAAAACCCTAAACCCTTAATTAAAATAAAAACCCTAACCTAATTTAATTAAAAA
*
55371936 CCCTAAACCC
65 CCCT--AGCC
** * * *
55371946 TTAA-TTAAAAAACACTAACCCT-AACCCTAACCTAATTTAATTAAAAACCCTAAACC---CTTA
1 -TAATTTAATTAA-A--AACCCTAAACCCT----TAATTAAAATAAAAACCCT-AACCTAATTTA
*
55372006 ACTTAAAAACCCTAACC
57 A-TTAAAAACCCTAGCC
* * * *
55372023 TAATTTAATTAAAAACCCT--AGCC-TAATTTAAATAAAAACCCTAAACCCTTAGTTAA--AAAC
1 TAATTTAATTAAAAACCCTAAACCCTTAATTAAAATAAAAACCCT-AA-CCTAATTTAATTAAA-
**
55372083 CCTAACCCTAATC
63 ---AACCCTAGCC
* *
55372096 TAATTTAATTAAAAACCCTAAA-CC-TAATTTAATTAAAAACCCTAACCTAATTTAATTAAAAAC
1 TAATTTAATTAAAAACCCTAAACCCTTAATTAAAATAAAAACCCTAACCTAATTTAATTAAAAAC
55372159 CCTAGCC
66 CCTAGCC
* * ***
55372166 TAATTTAATTAGAAACCCTAAACCATTAATTAAAAATCCTAACCCTAACCTAATTTAATTAAAAA
1 TAATTTAATTAAAAACCCTAAACCCTTAATT-AAAATAAAAACCCTAACCTAATTTAATTAAAAA
*
55372231 CCTTAGCC
65 CCCTAGCC
* * *
55372239 TAATTTAATTATAAACCCTAAACCCTTAACT----TAAAAACCCTAACCTAATTTAATTAAAAAT
1 TAATTTAATTAAAAACCCTAAACCCTTAATTAAAATAAAAACCCTAACCTAATTTAATTAAAAAC
*
55372300 TCTAGCC
66 CCTAGCC
**
55372307 TAATTTAATTAAAAACCCTAAACCCTTAATTAAAA-ACCCTAACCCTAACCTAATTTAACTTAAA
1 TAATTTAATTAAAAACCCTAAACCCTTAATTAAAATA--AAAACCCTAACCTAATTTAA-TTAAA
55372371 AACCCTA
63 AACCCTA
55372378 AACCCTTAAC
Statistics
Matches: 707, Mismatches: 81, Indels: 140
0.76 0.09 0.15
Matches are distributed among these distances:
66 4 0.01
67 23 0.03
68 158 0.22
69 20 0.03
70 37 0.05
71 36 0.05
72 55 0.08
73 221 0.31
74 73 0.10
75 25 0.04
76 9 0.01
77 9 0.01
78 4 0.01
79 11 0.02
80 19 0.03
81 3 0.00
ACGTcount: A:0.46, C:0.24, G:0.01, T:0.29
Consensus pattern (72 bp):
TAATTTAATTAAAAACCCTAAACCCTTAATTAAAATAAAAACCCTAACCTAATTTAATTAAAAAC
CCTAGCC
Found at i:55372389 original size:22 final size:21
Alignment explanation
Indices: 55372361--55372408 Score: 62
Period size: 23 Copynumber: 2.2 Consensus size: 21
55372351 CTAACCTAAT
55372361 TTAAC-TTAAAAACCCTAAACCC
1 TTAACTTTAAAAACCCT-AA-CC
*
55372383 TTAACTTTAAAAACTCTAACC
1 TTAACTTTAAAAACCCTAACC
55372404 TTAAC
1 TTAAC
55372409 GTAATGTTAG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 7 0.29
22 7 0.29
23 10 0.42
ACGTcount: A:0.44, C:0.27, G:0.00, T:0.29
Consensus pattern (21 bp):
TTAACTTTAAAAACCCTAACC
Found at i:55372561 original size:116 final size:116
Alignment explanation
Indices: 55372410--55372627 Score: 400
Period size: 116 Copynumber: 1.9 Consensus size: 116
55372400 AACCTTAACG
*
55372410 TAATGTTAGATTTGGAAAAATGTTTTGACTGGTACTAACAAATAATAATTTTACATAATTTCATA
1 TAATGTTAGATTTGGAAAAATGTTTTGACTGGTACTAACAAATAATAATTGTACATAATTTCATA
55372475 ATTTTACTAACCATTAATACAAATTTTTGACTTAATAATTTTACATTCACA
66 ATTTTACTAACCATTAATACAAATTTTTGACTTAATAATTTTACATTCACA
* * *
55372526 TAATGTTAGATTTGGAAAAATGTTTTGACTGGTACTAACAATTAATAATTGTATATAATTTGATA
1 TAATGTTAGATTTGGAAAAATGTTTTGACTGGTACTAACAAATAATAATTGTACATAATTTCATA
55372591 ATTTTACTAACCATTAATACAAATTTTTGACTTAATA
66 ATTTTACTAACCATTAATACAAATTTTTGACTTAATA
55372628 CAATTTATCA
Statistics
Matches: 98, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
116 98 1.00
ACGTcount: A:0.39, C:0.10, G:0.09, T:0.42
Consensus pattern (116 bp):
TAATGTTAGATTTGGAAAAATGTTTTGACTGGTACTAACAAATAATAATTGTACATAATTTCATA
ATTTTACTAACCATTAATACAAATTTTTGACTTAATAATTTTACATTCACA
Done.