Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67659327
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 461372 characters in sequence are not A, C, G, or T
File 185 of 216
Found at i:57753497 original size:16 final size:16
Alignment explanation
Indices: 57753476--57753506 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
57753466 TAAAAAATTC
*
57753476 TATAAAAAATTTTAAT
1 TATAAAAAAATTTAAT
57753492 TATAAAAAAATTTAA
1 TATAAAAAAATTTAA
57753507 AATCCAAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
TATAAAAAAATTTAAT
Found at i:57756554 original size:31 final size:31
Alignment explanation
Indices: 57756519--57756581 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
57756509 TATAAGTAAC
57756519 TAGCATTTGGATGTTATTTAATAGACATTAT
1 TAGCATTTGGATGTTATTTAATAGACATTAT
57756550 TAGCATTTGGATGTTATTTAATAGACATTAT
1 TAGCATTTGGATGTTATTTAATAGACATTAT
57756581 T
1 T
57756582 TAAGTGTATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.32, C:0.06, G:0.16, T:0.46
Consensus pattern (31 bp):
TAGCATTTGGATGTTATTTAATAGACATTAT
Found at i:57765409 original size:13 final size:13
Alignment explanation
Indices: 57765387--57765416 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
57765377 CAATATTTAC
57765387 ATTTTCTTGTTAA
1 ATTTTCTTGTTAA
*
57765400 ATTTTTTTGTTAA
1 ATTTTCTTGTTAA
57765413 ATTT
1 ATTT
57765417 AACTATTACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.23, C:0.03, G:0.07, T:0.67
Consensus pattern (13 bp):
ATTTTCTTGTTAA
Found at i:57766022 original size:18 final size:18
Alignment explanation
Indices: 57765999--57766034 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
57765989 CGTGTCAGTG
57765999 TGAGTGTAAATAGTAACT
1 TGAGTGTAAATAGTAACT
*
57766017 TGAGTGTGAATAGTAACT
1 TGAGTGTAAATAGTAACT
57766035 ATCTAATTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.36, C:0.06, G:0.25, T:0.33
Consensus pattern (18 bp):
TGAGTGTAAATAGTAACT
Found at i:57770823 original size:21 final size:21
Alignment explanation
Indices: 57770799--57770879 Score: 63
Period size: 21 Copynumber: 3.9 Consensus size: 21
57770789 AACAAAATCA
*
57770799 CATAAGTGCTAAACAGAAACC
1 CATAAGGGCTAAACAGAAACC
* * * * *
57770820 CATAAGGGTTGAACGGAAGCT
1 CATAAGGGCTAAACAGAAACC
* * *
57770841 CATAAGAGCTGAATAGAAACC
1 CATAAGGGCTAAACAGAAACC
* *
57770862 CGTAAGGGTTAAACAGAA
1 CATAAGGGCTAAACAGAA
57770880 GCTTAATAGA
Statistics
Matches: 43, Mismatches: 17, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
21 43 1.00
ACGTcount: A:0.43, C:0.17, G:0.23, T:0.16
Consensus pattern (21 bp):
CATAAGGGCTAAACAGAAACC
Found at i:57770845 original size:42 final size:42
Alignment explanation
Indices: 57770799--57770942 Score: 139
Period size: 42 Copynumber: 3.4 Consensus size: 42
57770789 AACAAAATCA
* * *
57770799 CATAAGTGCTAAACAGAAACCCATAAGGGTTGAACGGAAGCT
1 CATAAGAGCTAAACAGAAACCCATAAGGGTTAAACAGAAGCT
* * *
57770841 CATAAGAGCTGAATAGAAACCCGTAAGGGTTAAACAGAAGCT
1 CATAAGAGCTAAACAGAAACCCATAAGGGTTAAACAGAAGCT
* * * * *
57770883 TA-ATAGAGCTGAACGGAAACCCATTAA-GGTTTAACAGAAACT
1 CATA-AGAGCTAAACAGAAACCCA-TAAGGGTTAAACAGAAGCT
* *
57770925 CATATGAGTTAAACAGAA
1 CATAAGAGCTAAACAGAA
57770943 GCTCGTGAGA
Statistics
Matches: 82, Mismatches: 17, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
41 1 0.01
42 77 0.94
43 4 0.05
ACGTcount: A:0.43, C:0.17, G:0.22, T:0.19
Consensus pattern (42 bp):
CATAAGAGCTAAACAGAAACCCATAAGGGTTAAACAGAAGCT
Found at i:57778641 original size:27 final size:26
Alignment explanation
Indices: 57778604--57778662 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
57778594 AAAAATAAAA
*
57778604 ATTTACCAAAATATAATCCCTTTTTTT
1 ATTTACCAAAATATAAT-ACTTTTTTT
* * *
57778631 ATTTACTAAAATATTATATTTTTTTT
1 ATTTACCAAAATATAATACTTTTTTT
57778657 ATTTAC
1 ATTTAC
57778663 ACCAATGGTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 13 0.46
27 15 0.54
ACGTcount: A:0.34, C:0.12, G:0.00, T:0.54
Consensus pattern (26 bp):
ATTTACCAAAATATAATACTTTTTTT
Found at i:57779226 original size:19 final size:19
Alignment explanation
Indices: 57779202--57779262 Score: 70
Period size: 19 Copynumber: 3.3 Consensus size: 19
57779192 TCTAATTAAG
57779202 TAATAACTCTATTTTAATT
1 TAATAACTCTATTTTAATT
* * *
57779221 TAATAA-ACTATTCTCATT
1 TAATAACTCTATTTTAATT
* *
57779239 TAATAACTATATTTTAAAT
1 TAATAACTCTATTTTAATT
57779258 TAATA
1 TAATA
57779263 GAAATACTAG
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
18 15 0.45
19 18 0.55
ACGTcount: A:0.43, C:0.10, G:0.00, T:0.48
Consensus pattern (19 bp):
TAATAACTCTATTTTAATT
Found at i:57779231 original size:18 final size:18
Alignment explanation
Indices: 57779210--57779262 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
57779200 AGTAATAACT
57779210 CTATTTTAATTTAATAAA
1 CTATTTTAATTTAATAAA
* *
57779228 CTATTCTCATTTAAT-AA
1 CTATTTTAATTTAATAAA
*
57779245 CTATATTTTAAATTAATA
1 C--TATTTTAATTTAATA
57779263 GAAATACTAG
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
17 3 0.11
18 13 0.48
19 11 0.41
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.49
Consensus pattern (18 bp):
CTATTTTAATTTAATAAA
Found at i:57779812 original size:5 final size:5
Alignment explanation
Indices: 57779802--57779835 Score: 61
Period size: 5 Copynumber: 7.0 Consensus size: 5
57779792 AGCTGTGTCA
57779802 GTTTT GTTTT GTTTT GTTTT GTTTT GTTTT -TTTT
1 GTTTT GTTTT GTTTT GTTTT GTTTT GTTTT GTTTT
57779836 AATATATTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 4 0.14
5 25 0.86
ACGTcount: A:0.00, C:0.00, G:0.18, T:0.82
Consensus pattern (5 bp):
GTTTT
Found at i:57779904 original size:27 final size:27
Alignment explanation
Indices: 57779838--57779907 Score: 77
Period size: 27 Copynumber: 2.6 Consensus size: 27
57779828 TTTTTTTTAA
* ***
57779838 TATATTTTGGTAAATAAAAAAATTTAT
1 TATATTTTGGTAAATTAAAAAAGGGAT
* *
57779865 AATATTTTAGTAAATTAAAAAAGGGAT
1 TATATTTTGGTAAATTAAAAAAGGGAT
*
57779892 TATACTTTGGTAAATT
1 TATATTTTGGTAAATT
57779908 TTTATTTTTT
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.46, C:0.01, G:0.11, T:0.41
Consensus pattern (27 bp):
TATATTTTGGTAAATTAAAAAAGGGAT
Found at i:57782703 original size:20 final size:21
Alignment explanation
Indices: 57782678--57782717 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
57782668 TGCCATATTT
57782678 AATAATGA-AAAAAATCAAAC
1 AATAATGATAAAAAATCAAAC
*
57782698 AATAATGATAATAAATCAAA
1 AATAATGATAAAAAATCAAA
57782718 GATAAAAGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.68, C:0.07, G:0.05, T:0.20
Consensus pattern (21 bp):
AATAATGATAAAAAATCAAAC
Found at i:57784409 original size:94 final size:94
Alignment explanation
Indices: 57784249--57784535 Score: 342
Period size: 94 Copynumber: 3.0 Consensus size: 94
57784239 GTGGCACAGT
* * *
57784249 TTCATCTTGCTCTATTGCAACTTCAAGGAGATAAGATTTGCTGTTGTAGTTTCATTCCAACCCAC
1 TTCATCTTGCTCTATTGCAACTTCAAGGAGATAAGATTCGCTATTGTAGTTTCATTCTAACCCAC
* *
57784314 TGCAACTTCAGGGATATAGGATTTGTATC
66 TGCAACTTCAGGGGTATAGGATTTGTAGC
* * * * * * * * *
57784343 TTCATTTTGCTCTACTGCAACTTTAGGGAGGTAAGATTCGCTATGGTAGCTTCAATCTAACACAC
1 TTCATCTTGCTCTATTGCAACTTCAAGGAGATAAGATTCGCTATTGTAGTTTCATTCTAACCCAC
* * *
57784408 TGCAACTTTAGGGGCACAGGATTTGTAGC
66 TGCAACTTCAGGGGTATAGGATTTGTAGC
* * * * *
57784437 TTCATCTTGCTCCATTGCAACCTCAATGAGATAAGATTCG-TCATTGTAGTTTGTATTCTGACCC
1 TTCATCTTGCTCTATTGCAACTTCAAGGAGATAAGATTCGCT-ATTGTAGTTT-CATTCTAACCC
*
57784501 ACTGCAACTTCAGGGGTATAGGAATTGTAGC
64 ACTGCAACTTCAGGGGTATAGGATTTGTAGC
57784532 TTCA
1 TTCA
57784536 ATCCAATCAA
Statistics
Matches: 156, Mismatches: 35, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
93 1 0.01
94 117 0.75
95 38 0.24
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (94 bp):
TTCATCTTGCTCTATTGCAACTTCAAGGAGATAAGATTCGCTATTGTAGTTTCATTCTAACCCAC
TGCAACTTCAGGGGTATAGGATTTGTAGC
Found at i:57784568 original size:139 final size:138
Alignment explanation
Indices: 57784388--57784675 Score: 355
Period size: 139 Copynumber: 2.1 Consensus size: 138
57784378 ATTCGCTATG
* * * * *
57784388 GTAGCTTCAATCTAACACACTGCAACTTTAGGGGCACAGGATTTGTAGCTTCATCTTGCTCCATT
1 GTAGCTTCAATCCAACACACTACAACTTCAGGGACACAGGATTTGTAGCTTCATCTTGCTCCACT
* * * * * *
57784453 GCAACCTCA-ATGAGATAAGATTCGTCATTGTAGTTTGTATTCTGACCCACTGCAACTTCAGGGG
66 GCAACCTCAGA-AAGATAAGATTCGTCATGGTAGATT-CAATCCGACCCACTGCAACTTCAGGGG
57784517 TATAGGAATT
129 TATAGGAATT
* *
57784527 GTAGCTTCAATCCAATCA-ACTACAACTTCAGGGATATAGGATTTGTAGCTTCATCTTGCTCCAC
1 GTAGCTTCAATCCAA-CACACTACAACTTCAGGGACACAGGATTTGTAGCTTCATCTTGCTCCAC
* * * * **
57784591 TGCAACTTTAGAAAGATAAGATTTGTTATGGTAGATTCAATCCGACTTACTGCAACTTCAGGGGT
65 TGCAACCTCAGAAAGATAAGATTCGTCATGGTAGATTCAATCCGACCCACTGCAACTTCAGGGGT
*
57784656 ATAGGATTT
130 ATAGGAATT
57784665 GTAGCTTCAAT
1 GTAGCTTCAAT
57784676 ATGTTCCATT
Statistics
Matches: 127, Mismatches: 20, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
138 42 0.33
139 82 0.65
140 3 0.02
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.32
Consensus pattern (138 bp):
GTAGCTTCAATCCAACACACTACAACTTCAGGGACACAGGATTTGTAGCTTCATCTTGCTCCACT
GCAACCTCAGAAAGATAAGATTCGTCATGGTAGATTCAATCCGACCCACTGCAACTTCAGGGGTA
TAGGAATT
Found at i:57784597 original size:44 final size:44
Alignment explanation
Indices: 57784310--57785063 Score: 138
Period size: 44 Copynumber: 16.3 Consensus size: 44
57784300 TCATTCCAAC
* *
57784310 CCACTGCAACTTCAGGGATATAGGATTTGTATCTTCATTTTGCT
1 CCACTGCAACTTCAGGGATATAGGATTTGTAGCTTCATCTTGCT
* * ** * **
57784354 CTACTGCAACTTTAGGGAGGTAAGATTCGCTATGGTAGCTTCAATCTAAC-
1 CCACTGCAACTTCAGGGATATAGGA-T---T-T-GTAGCTTC-ATCTTGCT
* * ** *
57784404 ACACTGCAACTTTAGGGGCACAGGATTTGTAGCTTCATCTTGCT
1 CCACTGCAACTTCAGGGATATAGGATTTGTAGCTTCATCTTGCT
* * ** * * * *
57784448 CCATTGCAACCTCAATGAGATAAGATTCGTCATTGTAGTTTGTAT-TCTGAC-
1 CCACTGCAACTTCAGGGATATAGGA----T--TTGTAGCTT-CATCT-TG-CT
* * ***
57784499 CCACTGCAACTTCAGGGGTATAGGAATTGTAGCTTCAATC-CAAT
1 CCACTGCAACTTCAGGGATATAGGATTTGTAGCTTC-ATCTTGCT
* *
57784543 CAACTACAACTTCAGGGATATAGGATTTGTAGCTTCATCTTGCT
1 CCACTGCAACTTCAGGGATATAGGATTTGTAGCTTCATCTTGCT
* ** * * * *
57784587 CCACTGCAACTTTAGAAAGATAAGATTTGTTATGGTAGATTCAATC-CGACT
1 CCACTGCAACTTCAGGGATATAGGA----TT-T-GTAGCTTC-ATCTTG-CT
* * * *
57784638 -TACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCAAT-ATGTT
1 CCACTGCAACTTCAGGGATATAGGATTTGTAGCTTC-ATCTTGCT
* * * * * * *
57784681 CCATTGCAACTTCAAGGAGATAAGATTTGCTATGGTAGTTTCA-ATT-CAAC
1 CCACTGCAACTTCAGGGATATAGGA--T--T-T-GTAGCTTCATCTTGC--T
* * **
57784731 CCACTGCAACTTCAAGGG-TATATGATTTGTAG-TTGCAACTTTATT
1 CCACTGCAACTTC-AGGGATATAGGATTTGTAGCTT-CATC-TTGCT
* * * * * *
57784776 CCAACCTATTGCAACTTCAGGGGTATAGAAATTGTAACTTCAATC-CGAT
1 CC-A-C---TGCAACTTCAGGGATATAGGATTTGTAGCTTC-ATCTTGCT
** * *
57784825 CCACTAAAACTTCAGGGATGTAGGATTTGTAGCTTCATCTTACT
1 CCACTGCAACTTCAGGGATATAGGATTTGTAGCTTCATCTTGCT
* * * * ** *
57784869 CCACTACAACTTCAGGGAGATA-GATATGCTATGGTAGA-CTCGGCT
1 CCACTGCAACTTCAGGGATATAGGATTTG-TA-GCTTCATCT-TGCT
* * * * * * * * *
57784914 -TACTGCAACTTTAGGGGTGTAAGATTTGTAGTTATAGCTTCATTCCAAC
1 CCACTGCAACTTCAGGGATATAGGATTTGTAGCT-T--CATC-TTGC--T
* *
57784963 CCACTGCAACTTCAGGG-TATAGGAATTGTAGCTTCAATC-TGAT
1 CCACTGCAACTTCAGGGATATAGGATTTGTAGCTTC-ATCTTGCT
* * ** *
57785006 ACATTGCTGCTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCT
1 CCACTGCAACTTCAGGGATATAGGATTTGTAGCTTCATCTTGCT
* *
57785050 CTACTACAACTTCA
1 CCACTGCAACTTCA
57785064 AGGAGATAAG
Statistics
Matches: 492, Mismatches: 149, Indels: 138
0.63 0.19 0.18
Matches are distributed among these distances:
43 37 0.08
44 223 0.45
45 27 0.05
46 9 0.02
47 6 0.01
48 9 0.02
49 25 0.05
50 117 0.24
51 38 0.08
52 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.33
Consensus pattern (44 bp):
CCACTGCAACTTCAGGGATATAGGATTTGTAGCTTCATCTTGCT
Found at i:57784647 original size:94 final size:93
Alignment explanation
Indices: 57784527--57784762 Score: 269
Period size: 94 Copynumber: 2.5 Consensus size: 93
57784517 TATAGGAATT
* * * * *
57784527 GTAGCTTCAATCCAATCAACTACAACTTCAGGGATATAGGATTTGTAGCTTC-ATCTTGCTCCAC
1 GTAGATTCAATCCAACCCACTGCAACTTCAGGG-TATAGGATTTGTAGCTTCAAT-ATGCTCCAC
* *
57784591 TGCAACTT-TAGAAAGATAAGATTTGTTATG
64 TGCAACTTCAAG-AAGATAAGATTTGCTATG
* ** * *
57784621 GTAGATTCAATCCGACTTACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCAATATGTTCCATT
1 GTAGATTCAATCCAACCCACTGCAACTTCA-GGGTATAGGATTTGTAGCTTCAATATGCTCCACT
*
57784686 GCAACTTCAAGGAGATAAGATTTGCTATG
65 GCAACTTCAAGAAGATAAGATTTGCTATG
* * *
57784715 GTAGTTTCAATTCAACCCACTGCAACTTCAAGGGTATATGATTTGTAG
1 GTAGATTCAATCCAACCCACTGCAACTTC-AGGGTATAGGATTTGTAG
57784763 TTGCAACTTT
Statistics
Matches: 120, Mismatches: 18, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
94 112 0.93
95 8 0.07
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33
Consensus pattern (93 bp):
GTAGATTCAATCCAACCCACTGCAACTTCAGGGTATAGGATTTGTAGCTTCAATATGCTCCACTG
CAACTTCAAGAAGATAAGATTTGCTATG
Found at i:57784693 original size:138 final size:139
Alignment explanation
Indices: 57784425--57784709 Score: 331
Period size: 138 Copynumber: 2.1 Consensus size: 139
57784415 TTAGGGGCAC
* * * *
57784425 AGGATTTGTAGCTTCATCTTGCTCCATTGCAACCTCAATGAGATAAGATTCGTCATTGTAGTTTG
1 AGGATTTGTAGCTTCATCTTGCTCCACTGCAACCTCAATAAGATAAGATTCGTCATGGTAGATTG
* * * *
57784490 TATTCTGACCCACTGCAACTTCAGGGGTATAGGAATTGTAGCTTCAATCCAATCAACTACAACTT
66 CAATCCGACCCACTGCAACTTCAGGGGTATAGGAATTGTAGCTTCAATACAATCAACTACAACTT
* *
57784555 CAGGGATAT
131 CAAGGAGAT
* * * *
57784564 AGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTTAGA-AAGATAAGATTTGTTATGGTAGATT
1 AGGATTTGTAGCTTCATCTTGCTCCACTGCAACCTCA-ATAAGATAAGATTCGTCATGGTAGATT
** * *** * * *
57784628 -CAATCCGACTTACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCAATATGTTCCATTGCAACT
65 GCAATCCGACCCACTGCAACTTCAGGGGTATAGGAATTGTAGCTTCAATACAATCAACTACAACT
57784692 TCAAGGAGAT
130 TCAAGGAGAT
*
57784702 AAGATTTG
1 AGGATTTG
57784710 CTATGGTAGT
Statistics
Matches: 121, Mismatches: 24, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
138 66 0.55
139 54 0.45
140 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Consensus pattern (139 bp):
AGGATTTGTAGCTTCATCTTGCTCCACTGCAACCTCAATAAGATAAGATTCGTCATGGTAGATTG
CAATCCGACCCACTGCAACTTCAGGGGTATAGGAATTGTAGCTTCAATACAATCAACTACAACTT
CAAGGAGAT
Found at i:57785037 original size:181 final size:182
Alignment explanation
Indices: 57784644--57785071 Score: 457
Period size: 181 Copynumber: 2.3 Consensus size: 182
57784634 GACTTACTGC
* * * *
57784644 AACTTCAGGGGTATAGGATTTGTAGCTTCAATATGT--TCCATTGCAACTTCAAGGAGATAAGAT
1 AACTTCAGGGATATAGGATTTGTAGCTTC-ATCT-TACTCCACTACAACTTCAAGGAGAT-AGAT
* * ** ** * *
57784707 TTGCTATGGTAGTTTCAATTCAACCCACTGCAACTTCAAGGGTATATGATTTGTAGTTGCAACTT
63 ATGCTATGGTAG-----ACTCGGCTTACTGCAACTTCAAGGGTATAAGATTTGTAGTTACAACTT
* * * *
57784772 TATTCCAACCTATTGCAACTTCAGGGGTATAGAAATTGTAACTTCAATCCGATCCACTAA
123 CATTCCAACCCACTGCAACTTCAGGGGTATAGAAATTGTAACTTCAATCCGATACACTAA
* *
57784832 AACTTCAGGGATGTAGGATTTGTAGCTTCATCTTACTCCACTACAACTTCAGGGAGATAGATATG
1 AACTTCAGGGATATAGGATTTGTAGCTTCATCTTACTCCACTACAACTTCAAGGAGATAGATATG
* * * * *
57784897 CTATGGTAGACTCGGCTTACTGCAACTTTAGGGGTGTAAGATTTGTAGTTATAGCTTCATTCCAA
66 CTATGGTAGACTCGGCTTACTGCAACTTCAAGGGTATAAGATTTGTAGTTACAACTTCATTCCAA
* * * * **
57784962 CCCACTGCAACTTCA-GGGTATAGGAATTGTAGCTTCAATCTGATACATTGC
131 CCCACTGCAACTTCAGGGGTATAGAAATTGTAACTTCAATCCGATACACTAA
** * * *
57785013 TGCTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCTACTACAACTTCAAGGAGATA
1 AACTTCAGGGATATAGGATTTGTAGCTTCATCTTACTCCACTACAACTTCAAGGAGATA
57785072 AGATTCGTTA
Statistics
Matches: 202, Mismatches: 36, Indels: 11
0.81 0.14 0.04
Matches are distributed among these distances:
181 81 0.40
182 56 0.28
186 1 0.00
187 18 0.09
188 46 0.23
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Consensus pattern (182 bp):
AACTTCAGGGATATAGGATTTGTAGCTTCATCTTACTCCACTACAACTTCAAGGAGATAGATATG
CTATGGTAGACTCGGCTTACTGCAACTTCAAGGGTATAAGATTTGTAGTTACAACTTCATTCCAA
CCCACTGCAACTTCAGGGGTATAGAAATTGTAACTTCAATCCGATACACTAA
Found at i:57793302 original size:22 final size:21
Alignment explanation
Indices: 57793273--57793316 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
57793263 CTACAAACCC
57793273 AAAAAAACCAAAAAAAAGAAG
1 AAAAAAACCAAAAAAAAGAAG
* *
57793294 AAAAGAAACGAAAAAAAGGAAG
1 AAAA-AAACCAAAAAAAAGAAG
57793316 A
1 A
57793317 TGAGGGAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.77, C:0.07, G:0.16, T:0.00
Consensus pattern (21 bp):
AAAAAAACCAAAAAAAAGAAG
Found at i:57794115 original size:16 final size:16
Alignment explanation
Indices: 57794084--57794120 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
57794074 ATGTGAATAA
57794084 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
57794100 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
57794116 TATTA
1 TATTA
57794121 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:57795936 original size:15 final size:15
Alignment explanation
Indices: 57795909--57795963 Score: 74
Period size: 15 Copynumber: 3.7 Consensus size: 15
57795899 AAAAATGGCA
*
57795909 GGAGGAGGGGGTGGT
1 GGAGGAGGAGGTGGT
* *
57795924 GGTGGAGGAGGTGGA
1 GGAGGAGGAGGTGGT
57795939 GGAGGAGGAGGTGGT
1 GGAGGAGGAGGTGGT
*
57795954 GGGGGAGGAG
1 GGAGGAGGAG
57795964 CTGCACCACC
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 34 1.00
ACGTcount: A:0.18, C:0.00, G:0.71, T:0.11
Consensus pattern (15 bp):
GGAGGAGGAGGTGGT
Found at i:57795948 original size:18 final size:18
Alignment explanation
Indices: 57795908--57795963 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 18
57795898 AAAAAATGGC
* * *
57795908 AGGAGGAGGGGGTGGTGG
1 AGGAGGAGGTGGAGGAGG
*
57795926 TGGAGGAGGTGGAGGAGG
1 AGGAGGAGGTGGAGGAGG
* *
57795944 AGGAGGTGGTGGGGGAGG
1 AGGAGGAGGTGGAGGAGG
57795962 AG
1 AG
57795964 CTGCACCACC
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.20, C:0.00, G:0.70, T:0.11
Consensus pattern (18 bp):
AGGAGGAGGTGGAGGAGG
Found at i:57808959 original size:13 final size:12
Alignment explanation
Indices: 57808934--57808968 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
57808924 GGTTTGCTTC
57808934 TCATGTTTATAA
1 TCATGTTTATAA
*
57808946 TCATGTTTGTTAA
1 TCATGTTT-ATAA
57808959 TCATGTTTAT
1 TCATGTTTAT
57808969 CTTATGCCTG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.26, C:0.09, G:0.11, T:0.54
Consensus pattern (12 bp):
TCATGTTTATAA
Found at i:57810195 original size:38 final size:38
Alignment explanation
Indices: 57810144--57810220 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
57810134 TCCTGCTCCT
57810144 TTTTGCAGTTCAACGACATGATAAATGTGCCGTTCTCA
1 TTTTGCAGTTCAACGACATGATAAATGTGCCGTTCTCA
57810182 TTTTGCAGTTCAACGACATGATAAATGTGCCGTTCTCA
1 TTTTGCAGTTCAACGACATGATAAATGTGCCGTTCTCA
57810220 T
1 T
57810221 CCGAAGCATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (38 bp):
TTTTGCAGTTCAACGACATGATAAATGTGCCGTTCTCA
Found at i:57813513 original size:80 final size:81
Alignment explanation
Indices: 57813424--57813583 Score: 214
Period size: 83 Copynumber: 2.0 Consensus size: 81
57813414 GAATTAATTT
* * ** *
57813424 TTTTTAATTATTTTACAAGAAATTTTTAGC-ATTTATGTTAAAATAAATTTATAAAATATTTATT
1 TTTTTAATTATTTAACAAGAAATTTTTAACAATTTATGCCAAAATAAATTTATAAAAGATTTATT
*
57813488 TAACACTTGAATCCTA
66 TAACAATTGAATCCTA
* * *
57813504 TTTTTAATTATTTAACAAGGACTTTTTAACAATATTTATGCCAAAATATATTTATAAAAGATTTA
1 TTTTTAATTATTTAACAAGAAATTTTTAAC-A-ATTTATGCCAAAATAAATTTATAAAAGATTTA
57813569 TTTAACAATTGAATC
64 TTTAACAATTGAATC
57813584 TTAGTTAAAG
Statistics
Matches: 68, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
80 26 0.38
83 42 0.62
ACGTcount: A:0.41, C:0.08, G:0.06, T:0.46
Consensus pattern (81 bp):
TTTTTAATTATTTAACAAGAAATTTTTAACAATTTATGCCAAAATAAATTTATAAAAGATTTATT
TAACAATTGAATCCTA
Found at i:57816982 original size:16 final size:17
Alignment explanation
Indices: 57816961--57816992 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
57816951 TCAATCGATT
57816961 TAATTAT-AATAATTAG
1 TAATTATAAATAATTAG
57816977 TAATTATAAATAATTA
1 TAATTATAAATAATTA
57816993 TAAGCTTGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (17 bp):
TAATTATAAATAATTAG
Found at i:57817968 original size:21 final size:21
Alignment explanation
Indices: 57817935--57817974 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
57817925 ATATAGATAG
*
57817935 TTTTTAAAATTTTTATGAACA
1 TTTTTAAAATTTTAATGAACA
* *
57817956 TTTTTGAATTTTTAATGAA
1 TTTTTAAAATTTTAATGAA
57817975 GTGCGCGTTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.35, C:0.03, G:0.07, T:0.55
Consensus pattern (21 bp):
TTTTTAAAATTTTAATGAACA
Found at i:57823537 original size:22 final size:21
Alignment explanation
Indices: 57823504--57823544 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
57823494 GTTTAGCAGC
57823504 TATTTTTCGTGTT-TTTGGGT
1 TATTTTTCGTGTTGTTTGGGT
57823524 TATTGTTTCAGTGTTGTTTGG
1 TATT-TTTC-GTGTTGTTTGG
57823545 AGTCGGTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.22
21 4 0.22
22 5 0.28
23 5 0.28
ACGTcount: A:0.07, C:0.05, G:0.27, T:0.61
Consensus pattern (21 bp):
TATTTTTCGTGTTGTTTGGGT
Found at i:57827469 original size:22 final size:22
Alignment explanation
Indices: 57827433--57827474 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
57827423 AAGATATAAT
* *
57827433 GTCTTCTTCAATAATTGATTCA
1 GTCTTCCTCAATAATGGATTCA
*
57827455 GTCTTCCTCATTAATGGATT
1 GTCTTCCTCAATAATGGATT
57827475 AAGATTTCAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.24, C:0.19, G:0.12, T:0.45
Consensus pattern (22 bp):
GTCTTCCTCAATAATGGATTCA
Found at i:57829724 original size:21 final size:22
Alignment explanation
Indices: 57829694--57829746 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
57829684 GCTCAACTTA
* * *
57829694 AAGCAAAGGCAGCATCGAGGG-
1 AAGCAGAGGCAGCAACAAGGGC
57829715 AAGCAGAGGCAGCAACAAGGGC
1 AAGCAGAGGCAGCAACAAGGGC
57829737 AA-CAGAGGCA
1 AAGCAGAGGCA
57829747 ATAAGAAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 26 0.93
22 2 0.07
ACGTcount: A:0.42, C:0.21, G:0.36, T:0.02
Consensus pattern (22 bp):
AAGCAGAGGCAGCAACAAGGGC
Found at i:57832180 original size:126 final size:125
Alignment explanation
Indices: 57831947--57832240 Score: 439
Period size: 126 Copynumber: 2.3 Consensus size: 125
57831937 GTCCAAATAG
* * * * * *
57831947 GAACTACTGTAGCAAAAGAGCGTACACGTGGGAACTTCTTTCAGTACTTTTGCTGACATTGCATC
1 GAACAACTGTAGCAAAAGAGCGT-CATGTGGGAGCTTCTTTTAGTACTTTTGCTAACAATGCATC
* *
57832012 CTACTTGAAGCGTTTTTGACACTATTTGCTCAGAAGCATCTTCTCAAAATTATTTTTTC-A
65 CTACTTAAAGCGTTTTTGACACTATTTGCTCAGAAACATCTTCTCAAAATTATTTTTTCAA
57832072 GAAACAACTGTAGCAAAAGAGCGTCTATGTGGGAGCTTCTTTTAGTACTTTTGCTAACAATGCAT
1 G-AACAACTGTAGCAAAAGAGCGTC-ATGTGGGAGCTTCTTTTAGTACTTTTGCTAACAATGCAT
*
57832137 CCTACTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTTCTCAAAATTATTTTTTCAA
64 CCTACTTAAAGCGTTTTTGACACTATTTGCTCAGAAACATCTTCTCAAAATTATTTTTTCAA
* *
57832199 GAACTACTGTAGCAAAAGAGCGTCCATGTAGGAGCTT-TTTTA
1 GAACAACTGTAGCAAAAGAGCGT-CATGTGGGAGCTTCTTTTA
57832241 AATTAACAAC
Statistics
Matches: 154, Mismatches: 11, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
125 7 0.05
126 144 0.94
127 3 0.02
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.34
Consensus pattern (125 bp):
GAACAACTGTAGCAAAAGAGCGTCATGTGGGAGCTTCTTTTAGTACTTTTGCTAACAATGCATCC
TACTTAAAGCGTTTTTGACACTATTTGCTCAGAAACATCTTCTCAAAATTATTTTTTCAA
Found at i:57832484 original size:98 final size:95
Alignment explanation
Indices: 57832283--57832458 Score: 257
Period size: 98 Copynumber: 1.8 Consensus size: 95
57832273 ACCCCAATCA
57832283 CTAATTTATTTGATTTTTCCTTAAAAACCCAAAACACTAAACCCTAATCTAATTTTTTTTAAAAT
1 CTAATTTATTTGATTTTTCCTTAAAAACCCAAAACACTAAACCCTAATCTAA-TTTTTTTAAAAT
* *
57832348 TTATAATTAATTTACTTAAGTAACCCAAAACC
65 TTATAATTAATTAACCTAAG-AACCCAAAACC
* *
57832380 CTAATTTATTTGATTTTTTCCTTAAAAA-CTATAAACGCTAAACCCTAATCTAA-TTTTTTAAAA
1 CTAATTTATTTGA-TTTTTCCTTAAAAACCCA-AAACACTAAACCCTAATCTAATTTTTTTAAAA
57832443 TTTATAATTAACTTAA
64 TTTATAATTAA-TTAA
57832459 ACCCTAAAAC
Statistics
Matches: 73, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
96 21 0.29
97 18 0.25
98 34 0.47
ACGTcount: A:0.40, C:0.16, G:0.02, T:0.41
Consensus pattern (95 bp):
CTAATTTATTTGATTTTTCCTTAAAAACCCAAAACACTAAACCCTAATCTAATTTTTTTAAAATT
TATAATTAATTAACCTAAGAACCCAAAACC
Found at i:57837763 original size:28 final size:28
Alignment explanation
Indices: 57837721--57837774 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
57837711 CACTCTAGAT
* *
57837721 TTAAAAACTATTGATATTAATAATTTTA
1 TTAAAAAATAATGATATTAATAATTTTA
*
57837749 TTAAAAAATAATGATATTAATGATTT
1 TTAAAAAATAATGATATTAATAATTT
57837775 GGACCAAGTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.48, C:0.02, G:0.06, T:0.44
Consensus pattern (28 bp):
TTAAAAAATAATGATATTAATAATTTTA
Found at i:57851880 original size:16 final size:17
Alignment explanation
Indices: 57851854--57851885 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
57851844 AAATCTGAGG
57851854 ATTTTTATTAATTTTAC
1 ATTTTTATTAATTTTAC
57851871 ATTTTT-TTAATTTTA
1 ATTTTTATTAATTTTA
57851886 GGGTTTGATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (17 bp):
ATTTTTATTAATTTTAC
Found at i:57855805 original size:34 final size:35
Alignment explanation
Indices: 57855759--57855833 Score: 107
Period size: 36 Copynumber: 2.1 Consensus size: 35
57855749 GTTCTCCATA
**
57855759 CTAAACTACTTTCAATCT-CGTGATGACATAAACC
1 CTAAACTACTTTCAATCTCCGTGAACACATAAACC
*
57855793 CTAAACTGCTTTCAATCTCGCGTGAACACATAAACC
1 CTAAACTACTTTCAATCTC-CGTGAACACATAAACC
57855829 CTAAA
1 CTAAA
57855834 AACTAAAAGA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
34 17 0.47
36 19 0.53
ACGTcount: A:0.36, C:0.28, G:0.09, T:0.27
Consensus pattern (35 bp):
CTAAACTACTTTCAATCTCCGTGAACACATAAACC
Found at i:57859263 original size:17 final size:16
Alignment explanation
Indices: 57859241--57859280 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 16
57859231 CAATGTTAAT
57859241 AATTAAAAATTAAATTA
1 AATTAAAAATT-AATTA
57859258 AATTAAAAAATTAATTA
1 AATT-AAAAATTAATTA
57859275 ATATTA
1 A-ATTA
57859281 TTTCTAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
17 11 0.52
18 10 0.48
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
AATTAAAAATTAATTA
Found at i:57859268 original size:18 final size:17
Alignment explanation
Indices: 57859241--57859280 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 17
57859231 CAATGTTAAT
57859241 AATT-AAAAATTAAATTA
1 AATTAAAAAATT-AATTA
57859258 AATTAAAAAATTAATTA
1 AATTAAAAAATTAATTA
57859275 ATATTA
1 A-ATTA
57859281 TTTCTAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.48
18 11 0.52
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
AATTAAAAAATTAATTA
Found at i:57859809 original size:22 final size:22
Alignment explanation
Indices: 57859787--57859828 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
57859777 TTAATTAAAT
*
57859787 TTTAA-ATTTTTTAGAATTTAA
1 TTTAAGATTTTTTAAAATTTAA
57859808 TTTAATGATTTTTTAAAATTT
1 TTTAA-GATTTTTTAAAATTT
57859829 TTATTTTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 5 0.28
23 13 0.72
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.60
Consensus pattern (22 bp):
TTTAAGATTTTTTAAAATTTAA
Found at i:57861002 original size:28 final size:28
Alignment explanation
Indices: 57860959--57861028 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
57860949 TCTGTTTTCC
*
57860959 AGATTTTATAGTTTCCCCCTATTTT-TT
1 AGATTTTATAGTTTTCCCCTATTTTGTT
57860986 AGATTTTATAGTTTTCCCCTATTTTGTT
1 AGATTTTATAGTTTTCCCCTATTTTGTT
*
57861014 AGATTTTACAGTTTT
1 AGATTTTATAGTTTT
57861029 GTCCTATACT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 24 0.60
28 16 0.40
ACGTcount: A:0.20, C:0.14, G:0.10, T:0.56
Consensus pattern (28 bp):
AGATTTTATAGTTTTCCCCTATTTTGTT
Found at i:57866847 original size:39 final size:39
Alignment explanation
Indices: 57866793--57866867 Score: 141
Period size: 39 Copynumber: 1.9 Consensus size: 39
57866783 ATGTATATAT
*
57866793 ATTTTATGGCATTAAATTCACTTCAAGGAAAACATACAC
1 ATTTTATGGCATTAAATTCACTTCAAAGAAAACATACAC
57866832 ATTTTATGGCATTAAATTCACTTCAAAGAAAACATA
1 ATTTTATGGCATTAAATTCACTTCAAAGAAAACATA
57866868 TCATACATTC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.43, C:0.16, G:0.09, T:0.32
Consensus pattern (39 bp):
ATTTTATGGCATTAAATTCACTTCAAAGAAAACATACAC
Found at i:57874263 original size:41 final size:41
Alignment explanation
Indices: 57874212--57874312 Score: 114
Period size: 41 Copynumber: 2.5 Consensus size: 41
57874202 TTTAAACAGA
* * ** *
57874212 TTCACTGGCACTTCA-CCTGATAGGCTTATAGTTTAATTCTG
1 TTCACCGGCACTT-AGCCTGATAGGCCTATAGCCTAATTCAG
* * *
57874253 TTCACCGGCACTTAGCCTGCTGGGCCTATAGCCTGATTCAG
1 TTCACCGGCACTTAGCCTGATAGGCCTATAGCCTAATTCAG
57874294 TTCACCGGCACTTAGCCTG
1 TTCACCGGCACTTAGCCTG
57874313 CTAGATGTAT
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
40 1 0.02
41 50 0.98
ACGTcount: A:0.19, C:0.29, G:0.21, T:0.32
Consensus pattern (41 bp):
TTCACCGGCACTTAGCCTGATAGGCCTATAGCCTAATTCAG
Found at i:57874339 original size:41 final size:41
Alignment explanation
Indices: 57874252--57874331 Score: 106
Period size: 41 Copynumber: 2.0 Consensus size: 41
57874242 GTTTAATTCT
* * *
57874252 GTTCACCGGCACTTAGCCTGCTGGGCCTATAGCCTGATTCA
1 GTTCACCGGCACTTAGCCTGCTAGACCTATAGCCTGAATCA
** *
57874293 GTTCACCGGCACTTAGCCTGCTAGATGTATAGTCTGAAT
1 GTTCACCGGCACTTAGCCTGCTAGACCTATAGCCTGAAT
57874332 ATTTTCACTG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 33 1.00
ACGTcount: A:0.20, C:0.28, G:0.24, T:0.29
Consensus pattern (41 bp):
GTTCACCGGCACTTAGCCTGCTAGACCTATAGCCTGAATCA
Found at i:57879901 original size:6 final size:6
Alignment explanation
Indices: 57879890--57879915 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
57879880 TCATATATAG
57879890 TCAGAT TCAGAT TCAGAT TCAGAT TC
1 TCAGAT TCAGAT TCAGAT TCAGAT TC
57879916 GGACTTAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (6 bp):
TCAGAT
Found at i:57887820 original size:37 final size:37
Alignment explanation
Indices: 57887765--57887894 Score: 197
Period size: 37 Copynumber: 3.5 Consensus size: 37
57887755 ACCGAAACAC
* *
57887765 GCTCGTAAGAGCTAATCCACCCGATAACATGCCAGAT
1 GCTCATAAGAGCTAATCCACCCGATAACACGCCAGAT
*
57887802 GCTCATAAGAGCTAATCCACCTGATAACACGCCAGAT
1 GCTCATAAGAGCTAATCCACCCGATAACACGCCAGAT
* *
57887839 GCTTATAAGAGCTAGTCCACCCGATAACACGCCAGAT
1 GCTCATAAGAGCTAATCCACCCGATAACACGCCAGAT
* *
57887876 GCTCATAAAAGCTAGTCCA
1 GCTCATAAGAGCTAATCCA
57887895 ACTGAAAATA
Statistics
Matches: 85, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 85 1.00
ACGTcount: A:0.34, C:0.29, G:0.18, T:0.19
Consensus pattern (37 bp):
GCTCATAAGAGCTAATCCACCCGATAACACGCCAGAT
Found at i:57897640 original size:40 final size:40
Alignment explanation
Indices: 57897402--57897626 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
57897392 TCGAATGATG
* * * *
57897402 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
57897442 TCCGGACTAAAAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
57897482 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
57897521 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
57897561 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
57897602 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
57897627 AACGAGTAGC
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 37 0.22
40 116 0.70
41 12 0.07
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:57901260 original size:25 final size:26
Alignment explanation
Indices: 57901219--57901284 Score: 91
Period size: 28 Copynumber: 2.5 Consensus size: 26
57901209 AGTGTAACTT
57901219 TTTTTGAAATAATTT-AAT-ATACTA
1 TTTTTGAAATAATTTAAATAATACTA
*
57901243 TTTTTGAAATAATATTAAAATAATATTA
1 TTTTTGAAATAAT-TT-AAATAATACTA
57901271 TTTTTGAAATAATT
1 TTTTTGAAATAATT
57901285 AATCTAAAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
24 13 0.35
25 2 0.05
27 4 0.11
28 18 0.49
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.50
Consensus pattern (26 bp):
TTTTTGAAATAATTTAAATAATACTA
Found at i:57911392 original size:24 final size:23
Alignment explanation
Indices: 57911359--57911428 Score: 59
Period size: 24 Copynumber: 3.0 Consensus size: 23
57911349 GGGTAGGATC
*
57911359 TGATTTTGTATTTGATATTGCATA
1 TGATTCTGTATTTGA-ATTGCATA
* * ** *
57911383 TGATTCTGTATCTAAGATTTTATT
1 TGATTCTGTATTTGA-ATTGCATA
*
57911407 TGAATCTGTATTTGAATTGCAT
1 TGATTCTGTATTTGAATTGCAT
57911429 CTGAAAACGT
Statistics
Matches: 34, Mismatches: 12, Indels: 1
0.72 0.26 0.02
Matches are distributed among these distances:
23 5 0.15
24 29 0.85
ACGTcount: A:0.26, C:0.07, G:0.16, T:0.51
Consensus pattern (23 bp):
TGATTCTGTATTTGAATTGCATA
Found at i:57911934 original size:12 final size:12
Alignment explanation
Indices: 57911917--57911952 Score: 72
Period size: 12 Copynumber: 3.0 Consensus size: 12
57911907 TTAATTTCTG
57911917 GTTTTAAAACGA
1 GTTTTAAAACGA
57911929 GTTTTAAAACGA
1 GTTTTAAAACGA
57911941 GTTTTAAAACGA
1 GTTTTAAAACGA
57911953 ACGTATGTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.42, C:0.08, G:0.17, T:0.33
Consensus pattern (12 bp):
GTTTTAAAACGA
Found at i:57915981 original size:99 final size:100
Alignment explanation
Indices: 57915838--57916037 Score: 393
Period size: 99 Copynumber: 2.0 Consensus size: 100
57915828 ACGAATTGAT
57915838 TGATTTTATAATTGAATTGGTTTTTTTTTTCATCCGTAAATTAATGATTTGGATCTGGTTTTAAA
1 TGATTTTATAATTGAATTGGTTTTTTTTTTCATCCGTAAATTAATGATTTGGATCTGGTTTTAAA
57915903 AATTTTAAATATTTAAATACATTATAATAAAATTA
66 AATTTTAAATATTTAAATACATTATAATAAAATTA
57915938 TGATTTTATAATTGAATTGG-TTTTTTTTTCATCCGTAAATTAATGATTTGGATCTGGTTTTAAA
1 TGATTTTATAATTGAATTGGTTTTTTTTTTCATCCGTAAATTAATGATTTGGATCTGGTTTTAAA
57916002 AATTTTAAATATTTAAATACATTATAATAAAATTA
66 AATTTTAAATATTTAAATACATTATAATAAAATTA
57916037 T
1 T
57916038 AAAATTTTAA
Statistics
Matches: 100, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
99 80 0.80
100 20 0.20
ACGTcount: A:0.36, C:0.05, G:0.10, T:0.49
Consensus pattern (100 bp):
TGATTTTATAATTGAATTGGTTTTTTTTTTCATCCGTAAATTAATGATTTGGATCTGGTTTTAAA
AATTTTAAATATTTAAATACATTATAATAAAATTA
Found at i:57917575 original size:26 final size:26
Alignment explanation
Indices: 57917546--57917598 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
57917536 TCATCACTTA
57917546 ACCCAATTAGTATATGATTTGTAAGC
1 ACCCAATTAGTATATGATTTGTAAGC
57917572 ACCCAATTAGTATATGATTTGTAAGC
1 ACCCAATTAGTATATGATTTGTAAGC
57917598 A
1 A
57917599 ATACAAGAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34
Consensus pattern (26 bp):
ACCCAATTAGTATATGATTTGTAAGC
Found at i:57918333 original size:19 final size:20
Alignment explanation
Indices: 57918309--57918346 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
57918299 AGGAAATTTG
57918309 AGGATCAAATT-ATAGAATT
1 AGGATCAAATTGATAGAATT
57918328 AGGATCAAATTGATAGAAT
1 AGGATCAAATTGATAGAAT
57918347 ATGTAAGCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.47, C:0.05, G:0.18, T:0.29
Consensus pattern (20 bp):
AGGATCAAATTGATAGAATT
Found at i:57918613 original size:22 final size:22
Alignment explanation
Indices: 57918553--57918610 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 22
57918543 AATCTTCAGG
57918553 GATATGCAATCTT---AGATAT
1 GATATGCAATCTTAGAAGATAT
57918572 GATATGCAATCTTAGAAGATAT
1 GATATGCAATCTTAGAAGATAT
* *
57918594 GATTTTGTAATCTTAGA
1 GA-TATGCAATCTTAGA
57918611 GATTTAATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.39
22 8 0.24
23 12 0.36
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (22 bp):
GATATGCAATCTTAGAAGATAT
Found at i:57931886 original size:27 final size:29
Alignment explanation
Indices: 57931854--57931917 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 29
57931844 AATTAAAATT
**
57931854 AATTTATTTAT-TTTTTAAAATATTAA-A
1 AATTTATTTATGTTTACAAAATATTAATA
*
57931881 ATTTTATTTTATGTTTACAAAATATTAATA
1 AATTTA-TTTATGTTTACAAAATATTAATA
57931911 AATTTAT
1 AATTTAT
57931918 AATAATTTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
27 5 0.17
28 5 0.17
29 14 0.47
30 6 0.20
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.55
Consensus pattern (29 bp):
AATTTATTTATGTTTACAAAATATTAATA
Found at i:57946083 original size:58 final size:54
Alignment explanation
Indices: 57946005--57946135 Score: 158
Period size: 58 Copynumber: 2.3 Consensus size: 54
57945995 GATTATTGTT
57946005 ATTAAATTTTAATA-AGATTATTATTAAACATAATTTAATAAAAATAATAAATAATTTA
1 ATTAAATTTTAATATA-ATTATTATTAAACATAATTTAAT-AAAA-AAT--ATAATTTA
* * *
57946063 ATTATATTTTAATATAATTATTATTAAATATGATTTAATAAAAAATATAATTTA
1 ATTAAATTTTAATATAATTATTATTAAACATAATTTAATAAAAAATATAATTTA
57946117 A-TAACATTTTTAATATAAT
1 ATTAA-A-TTTTAATATAAT
57946136 ATAATATAAT
Statistics
Matches: 66, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
53 2 0.03
54 10 0.15
55 12 0.18
56 3 0.05
57 4 0.06
58 34 0.52
59 1 0.02
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (54 bp):
ATTAAATTTTAATATAATTATTATTAAACATAATTTAATAAAAAATATAATTTA
Found at i:57946110 original size:17 final size:17
Alignment explanation
Indices: 57946088--57946120 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
57946078 AATTATTATT
*
57946088 AAATATGATTTAATAAA
1 AAATATAATTTAATAAA
57946105 AAATATAATTTAATAA
1 AAATATAATTTAATAA
57946121 CATTTTTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (17 bp):
AAATATAATTTAATAAA
Found at i:57946125 original size:27 final size:27
Alignment explanation
Indices: 57946095--57946160 Score: 64
Period size: 27 Copynumber: 2.5 Consensus size: 27
57946085 ATTAAATATG
*
57946095 ATTTAATAA-AAAATATAATTTAATAAC
1 ATTT-ATAATAAAATATAATATAATAAC
* * *
57946122 ATTTTTAATATAATATAATATAATAAT
1 ATTTATAATAAAATATAATATAATAAC
*
57946149 A-TTATATTAAAA
1 ATTTATAATAAAA
57946161 GAGTTTTTTT
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
26 11 0.35
27 20 0.65
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (27 bp):
ATTTATAATAAAATATAATATAATAAC
Found at i:57960058 original size:20 final size:21
Alignment explanation
Indices: 57960020--57960076 Score: 71
Period size: 20 Copynumber: 2.7 Consensus size: 21
57960010 TTCGAAACAC
* *
57960020 TTTTAAAATCAAGTGAAAATGA
1 TTTTCAAA-CAAGTCAAAATGA
*
57960042 TTTT-AACCAAGTCAAAATGA
1 TTTTCAAACAAGTCAAAATGA
57960062 TTTTCAAACAAGTCA
1 TTTTCAAACAAGTCA
57960077 GAATTGCTCC
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
20 16 0.52
21 11 0.35
22 4 0.13
ACGTcount: A:0.46, C:0.12, G:0.11, T:0.32
Consensus pattern (21 bp):
TTTTCAAACAAGTCAAAATGA
Found at i:57966142 original size:37 final size:38
Alignment explanation
Indices: 57966087--57966158 Score: 101
Period size: 37 Copynumber: 1.9 Consensus size: 38
57966077 TACCAAATAT
* *
57966087 TTTATATATATATAGTAATAGTATTATGATAATTGTTC
1 TTTATATATATACAGTAATAATATTATGATAATTGTTC
* *
57966125 TTTA-ATATATACGGTAATAATATTATGGTAATTG
1 TTTATATATATACAGTAATAATATTATGATAATTG
57966159 CTCTCTCTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
37 26 0.87
38 4 0.13
ACGTcount: A:0.38, C:0.03, G:0.12, T:0.47
Consensus pattern (38 bp):
TTTATATATATACAGTAATAATATTATGATAATTGTTC
Found at i:57966173 original size:40 final size:37
Alignment explanation
Indices: 57966091--57966173 Score: 94
Period size: 37 Copynumber: 2.2 Consensus size: 37
57966081 AAATATTTTA
* *
57966091 TATATATATAGTAATAGTATTATGATAATTGTTCTTT
1 TATATATACAGTAATAATATTATGATAATTGTTCTTT
* * *
57966128 AATATATACGGTAATAATATTATGGTAATTGCTCTCTCTT
1 TATATATACAGTAATAATATTATGATAATTG-T-TCT-TT
57966168 TATATA
1 TATATA
57966174 GTAATTTCAC
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
37 26 0.70
38 1 0.03
39 3 0.08
40 7 0.19
ACGTcount: A:0.35, C:0.07, G:0.11, T:0.47
Consensus pattern (37 bp):
TATATATACAGTAATAATATTATGATAATTGTTCTTT
Found at i:57970733 original size:35 final size:36
Alignment explanation
Indices: 57970664--57970733 Score: 88
Period size: 35 Copynumber: 2.0 Consensus size: 36
57970654 CATTGTTCGT
** *
57970664 GAACATGTTCAATTATATGTTCATGAACATGTTTGA
1 GAACATGTTCAATTATATGTTCACAAACAGGTTTGA
**
57970700 GAACATGTTCGTTTA-ATGTTCACAAACAGGTTTG
1 GAACATGTTCAATTATATGTTCACAAACAGGTTTG
57970734 TTTAACTTAA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
35 16 0.55
36 13 0.45
ACGTcount: A:0.31, C:0.13, G:0.19, T:0.37
Consensus pattern (36 bp):
GAACATGTTCAATTATATGTTCACAAACAGGTTTGA
Found at i:57970783 original size:303 final size:299
Alignment explanation
Indices: 57970233--57970832 Score: 1076
Period size: 303 Copynumber: 2.0 Consensus size: 299
57970223 ATTAATAAAA
*
57970233 ATATTACGGTTTGTATGCTTTTTTATTTATAATATAATTATTAATATTTATATTTGACTATTTTA
1 ATATTACGGTTTGTATGCTTTTTTATTTATAATATAATTATTAATATTTATATTTGACTAGTTTA
*
57970298 TATCTAAAAAATAATATATATATGTTTATTTATTGTTGGTTTGTTTATTATTACATTGTTCGTGA
66 TATCTAAAAAATAATATATATATGTTTATTTATTGCTGGTTTGTTTATTATTACATTGTTCGTGA
*
57970363 ACATGCTCAATTATATGTTCACGAACATGTTTGAGAACATGTTCGTTTAATGTTCACAAACATGT
131 ACATGCTCAATTATATGTTCACGAACATGTTTGAGAACATGTTCGTTTAATGTTCACAAACAGGT
* *
57970428 TTGTTTAACTTAAGTGAACGAACACGAAAAAAAATTTTGAAATTCTTAACGAACACGAACAAACT
196 TTGTTTAACTTAAGCGAACGAACACGAAAAAAAATTTTGAAATTCTTAACGAACACAAACAAACT
57970493 TAAAAATAAACAAACGAACATGAAAAGAGGTCCGTTCGT
261 TAAAAATAAACAAACGAACATGAAAAGAGGTCCGTTCGT
*
57970532 ATATTATGGTTTGTATGCTTTTTTATTTATAATATAATTATTAATATTTATATTTGACTAGTTTA
1 ATATTACGGTTTGTATGCTTTTTTATTTATAATATAATTATTAATATTTATATTTGACTAGTTTA
57970597 TATCTAAAAAATAATATATATATATATGTTTATTTATTGCTGGTTTGTTTATTATTACATTGTTC
66 TATCT--AAAA-AATA-ATATATATATGTTTATTTATTGCTGGTTTGTTTATTATTACATTGTTC
* *
57970662 GTGAACATGTTCAATTATATGTTCATGAACATGTTTGAGAACATGTTCGTTTAATGTTCACAAAC
127 GTGAACATGCTCAATTATATGTTCACGAACATGTTTGAGAACATGTTCGTTTAATGTTCACAAAC
57970727 AGGTTTGTTTAACTTAAGCGAACGAACAC-AAACAAAAATTTTGAAATTCTTAACGAACACAAAC
192 AGGTTTGTTTAACTTAAGCGAACGAACACGAAA-AAAAATTTTGAAATTCTTAACGAACACAAAC
57970791 AAACTTAAAAATAAACAAACGAACATGAAAAGAGGTCCGTTC
256 AAACTTAAAAATAAACAAACGAACATGAAAAGAGGTCCGTTC
57970833 ATTCAAGCTC
Statistics
Matches: 288, Mismatches: 8, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
299 68 0.24
301 4 0.01
302 7 0.02
303 209 0.73
ACGTcount: A:0.37, C:0.11, G:0.12, T:0.39
Consensus pattern (299 bp):
ATATTACGGTTTGTATGCTTTTTTATTTATAATATAATTATTAATATTTATATTTGACTAGTTTA
TATCTAAAAAATAATATATATATGTTTATTTATTGCTGGTTTGTTTATTATTACATTGTTCGTGA
ACATGCTCAATTATATGTTCACGAACATGTTTGAGAACATGTTCGTTTAATGTTCACAAACAGGT
TTGTTTAACTTAAGCGAACGAACACGAAAAAAAATTTTGAAATTCTTAACGAACACAAACAAACT
TAAAAATAAACAAACGAACATGAAAAGAGGTCCGTTCGT
Found at i:57976707 original size:20 final size:20
Alignment explanation
Indices: 57976676--57976715 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
57976666 TTTCTATAAA
57976676 TATTTTAAATTTT-AAAATT
1 TATTTTAAATTTTGAAAATT
57976695 TATTTTCAAATTTTGAAAATT
1 TATTTT-AAATTTTGAAAATT
57976716 ACTTTGATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 6 0.32
20 7 0.37
21 6 0.32
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.55
Consensus pattern (20 bp):
TATTTTAAATTTTGAAAATT
Found at i:57981483 original size:30 final size:30
Alignment explanation
Indices: 57981449--57981511 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
57981439 ACTTAACAAG
57981449 CAAATGCCTCTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
*
57981479 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
57981509 CAA
1 CAA
57981512 TAAAATAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.57, C:0.16, G:0.03, T:0.24
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAACAAAATTAA
Found at i:57981566 original size:22 final size:22
Alignment explanation
Indices: 57981541--57981583 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
57981531 TATCCAAACA
57981541 ATAACAATAAAATAGTAGCAAC
1 ATAACAATAAAATAGTAGCAAC
* * *
57981563 ATAATAGTAAAATGGTAGCAA
1 ATAACAATAAAATAGTAGCAA
57981584 AACAGGGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.56, C:0.09, G:0.14, T:0.21
Consensus pattern (22 bp):
ATAACAATAAAATAGTAGCAAC
Found at i:57983284 original size:16 final size:16
Alignment explanation
Indices: 57983253--57983299 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
57983243 ATATGAAGAA
57983253 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
57983269 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
*
57983285 TATTAAATTAAAATT
1 TATT-ATTTAAAATT
57983300 GAAATATTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
15 7 0.26
16 12 0.44
17 2 0.07
18 6 0.22
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:57987247 original size:6 final size:6
Alignment explanation
Indices: 57987236--57987266 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
57987226 TTATTGGTTT
57987236 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA A
1 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA A
57987267 CAAAGCTGTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
ATAAAA
Found at i:57995650 original size:145 final size:145
Alignment explanation
Indices: 57995385--57995679 Score: 563
Period size: 145 Copynumber: 2.0 Consensus size: 145
57995375 AAAAGGGCAT
57995385 TTCCAATTTAAAACAGGAGTAGGTAAACAATTAACTAAAAAACAAGCAGTAAGAATGCATTCACC
1 TTCCAATTTAAAACAGGAGTAGGTAAACAATTAACTAAAAAACAAGCAGTAAGAATGCATTCACC
57995450 CCAAAATTTGCTAGGCATGTGGGACTGGAATTTTAATGACAGGGCTACTTCCAGCAAATGTCGAT
66 CCAAAATTTGCTAGGCATGTGGGACTGGAATTTTAATGACAGGGCTACTTCCAGCAAATGTCGAT
*
57995515 GTTTTCGTTCCGTAA
131 GTTTTCGTTCCGCAA
57995530 TTCCAATTTAAAACAGGAGTAGGTAAACAATTAACTAAAAAACAAGCAGTAAGAATGCATTCACC
1 TTCCAATTTAAAACAGGAGTAGGTAAACAATTAACTAAAAAACAAGCAGTAAGAATGCATTCACC
*
57995595 CCAAAATTTGCTAGGCATGTGGGACTGGAATTTTAATGACAGGGCTACTTTCAGCAAATGTCGAT
66 CCAAAATTTGCTAGGCATGTGGGACTGGAATTTTAATGACAGGGCTACTTCCAGCAAATGTCGAT
*
57995660 GTTTTCGTTTCGCAA
131 GTTTTCGTTCCGCAA
57995675 TTCCA
1 TTCCA
57995680 TTCTGTTGAG
Statistics
Matches: 147, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
145 147 1.00
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (145 bp):
TTCCAATTTAAAACAGGAGTAGGTAAACAATTAACTAAAAAACAAGCAGTAAGAATGCATTCACC
CCAAAATTTGCTAGGCATGTGGGACTGGAATTTTAATGACAGGGCTACTTCCAGCAAATGTCGAT
GTTTTCGTTCCGCAA
Found at i:58005815 original size:12 final size:12
Alignment explanation
Indices: 58005798--58005825 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
58005788 TCTCTTAATC
58005798 TAGTGGTAAGAA
1 TAGTGGTAAGAA
58005810 TAGTGGTAAGAA
1 TAGTGGTAAGAA
58005822 TAGT
1 TAGT
58005826 ATGTTGTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.39, C:0.00, G:0.32, T:0.29
Consensus pattern (12 bp):
TAGTGGTAAGAA
Found at i:58011102 original size:73 final size:73
Alignment explanation
Indices: 58010981--58011119 Score: 260
Period size: 73 Copynumber: 1.9 Consensus size: 73
58010971 ATCTATTTGA
*
58010981 TACACAATTGAGATATGATAAAATAATTGCAACAATAGTTATTAAGATTTAAAAAGCTTAAATTT
1 TACACAATTGAGATATAATAAAATAATTGCAACAATAGTTATTAAGATTTAAAAAGCTTAAATTT
58011046 TACTCTTT
66 TACTCTTT
*
58011054 TACACAATTGAGATATAATAAAATAATTGCAACAATAGTTATTGAGATTTAAAAAGCTTAAATTT
1 TACACAATTGAGATATAATAAAATAATTGCAACAATAGTTATTAAGATTTAAAAAGCTTAAATTT
58011119 T
66 T
58011120 TATGAAAGGG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
73 64 1.00
ACGTcount: A:0.45, C:0.09, G:0.10, T:0.36
Consensus pattern (73 bp):
TACACAATTGAGATATAATAAAATAATTGCAACAATAGTTATTAAGATTTAAAAAGCTTAAATTT
TACTCTTT
Found at i:58013244 original size:41 final size:41
Alignment explanation
Indices: 58013175--58013311 Score: 121
Period size: 41 Copynumber: 3.5 Consensus size: 41
58013165 ATACTTCCGG
* * * *
58013175 TTCAGGTGAAATGTAGAAAAATATTTCCAACTTGAAGC-TCT
1 TTCAGGTGAAATATAGAAAAACACTTCCAACTGGAAGCGT-T
* *
58013216 TTCAAGTGAAATATAGAAAAACACTTCCAGCTGGAAGCGTT
1 TTCAGGTGAAATATAGAAAAACACTTCCAACTGGAAGCGTT
* *
58013257 TTCA-G-G-----T-GAAAAACACTTCCAGCTGGAAGCGCT
1 TTCAGGTGAAATATAGAAAAACACTTCCAACTGGAAGCGTT
*
58013290 TTCAGGTGAAATACAGAAAAAC
1 TTCAGGTGAAATATAGAAAAAC
58013312 GCTTTCAGTT
Statistics
Matches: 79, Mismatches: 8, Indels: 18
0.75 0.08 0.17
Matches are distributed among these distances:
33 29 0.37
34 2 0.03
35 1 0.01
39 1 0.01
40 1 0.01
41 44 0.56
42 1 0.01
ACGTcount: A:0.38, C:0.18, G:0.20, T:0.25
Consensus pattern (41 bp):
TTCAGGTGAAATATAGAAAAACACTTCCAACTGGAAGCGTT
Found at i:58013273 original size:33 final size:33
Alignment explanation
Indices: 58013231--58013300 Score: 131
Period size: 33 Copynumber: 2.1 Consensus size: 33
58013221 GTGAAATATA
*
58013231 GAAAAACACTTCCAGCTGGAAGCGTTTTCAGGT
1 GAAAAACACTTCCAGCTGGAAGCGCTTTCAGGT
58013264 GAAAAACACTTCCAGCTGGAAGCGCTTTCAGGT
1 GAAAAACACTTCCAGCTGGAAGCGCTTTCAGGT
58013297 GAAA
1 GAAA
58013301 TACAGAAAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.21
Consensus pattern (33 bp):
GAAAAACACTTCCAGCTGGAAGCGCTTTCAGGT
Found at i:58018775 original size:13 final size:13
Alignment explanation
Indices: 58018759--58018783 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
58018749 TACTCTCAAG
58018759 CATTCCAGTACTA
1 CATTCCAGTACTA
58018772 CATTCCAGTACT
1 CATTCCAGTACT
58018784 CATCAGCTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.32, G:0.08, T:0.32
Consensus pattern (13 bp):
CATTCCAGTACTA
Found at i:58020982 original size:12 final size:12
Alignment explanation
Indices: 58020965--58020997 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
58020955 TTTTTAATAA
58020965 AAAAATATTAAT
1 AAAAATATTAAT
58020977 AAAAAT-TCTAAT
1 AAAAATAT-TAAT
58020989 AAAAATATT
1 AAAAATATT
58020998 TTTAAGAGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 1 0.05
12 17 0.89
13 1 0.05
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAAATATTAAT
Found at i:58033147 original size:58 final size:57
Alignment explanation
Indices: 58033073--58033249 Score: 148
Period size: 58 Copynumber: 3.1 Consensus size: 57
58033063 CTTTTTCACA
*
58033073 TAAAAAATATTTTTTTTGGGTGCTGGGACACTGATGATCGGCACTCTTGTACCAAATT
1 TAAAAAATA-TTTTTTTGGGTGCTGGGACACTGATGGTCGGCACTCTTGTACCAAATT
** * ** * * ** **
58033131 TAAAAAATAGTTTTTTTTTGTGTTGATACATTGATGGCCAACA-TCCCAGTACCAAATT
1 TAAAAAATA-TTTTTTTGGGTGCTGGGACACTGATGGTCGGCACT-CTTGTACCAAATT
* *
58033189 TAAAATAA-A---TTTCGGGTGCTGGGACACTGATGGTTGGCACTCTTGTACCAAATT
1 TAAAA-AATATTTTTTTGGGTGCTGGGACACTGATGGTCGGCACTCTTGTACCAAATT
*
58033243 AAAAAAA
1 TAAAAAA
58033250 ATAGAATGTT
Statistics
Matches: 89, Mismatches: 27, Indels: 11
0.70 0.21 0.09
Matches are distributed among these distances:
53 2 0.02
54 34 0.38
55 1 0.01
57 1 0.01
58 49 0.55
59 2 0.02
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34
Consensus pattern (57 bp):
TAAAAAATATTTTTTTGGGTGCTGGGACACTGATGGTCGGCACTCTTGTACCAAATT
Found at i:58038587 original size:29 final size:29
Alignment explanation
Indices: 58038553--58038614 Score: 97
Period size: 29 Copynumber: 2.1 Consensus size: 29
58038543 TCGAATATCA
58038553 ACTTGGTTCAAACCAACAGCTCAGATACC
1 ACTTGGTTCAAACCAACAGCTCAGATACC
* * *
58038582 ACTTGGTTCAAACCTACAGCTCTGATACT
1 ACTTGGTTCAAACCAACAGCTCAGATACC
58038611 ACTT
1 ACTT
58038615 TTCACAGGGA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (29 bp):
ACTTGGTTCAAACCAACAGCTCAGATACC
Found at i:58040988 original size:13 final size:13
Alignment explanation
Indices: 58040970--58041001 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
58040960 TTTCCAGCAA
58040970 TTATGAATTTATT
1 TTATGAATTTATT
58040983 TTATGAATTTATT
1 TTATGAATTTATT
*
58040996 TGATGA
1 TTATGA
58041002 TGATCCGAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:58041209 original size:50 final size:50
Alignment explanation
Indices: 58041096--58041337 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
58041086 ATTTGGGTAA
* *
58041096 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
* *
58041152 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * * *
58041202 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
58041252 AGAGATCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
*
58041302 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGC
58041338 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 90 0.54
51 30 0.18
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.27, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:58041286 original size:100 final size:103
Alignment explanation
Indices: 58041096--58041345 Score: 355
Period size: 100 Copynumber: 2.4 Consensus size: 103
58041086 ATTTGGGTAA
*
58041096 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGATCCC
* *
58041161 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
58041202 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGATCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGATCCCCTA
58041264 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
58041302 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
58041346 GTTATTATCA
Statistics
Matches: 132, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 39 0.30
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGATCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:58047893 original size:27 final size:27
Alignment explanation
Indices: 58047830--58047899 Score: 77
Period size: 27 Copynumber: 2.6 Consensus size: 27
58047820 GTGGAGGGAC
*
58047830 TGCCACAGGCGCCACCAAAGATACCAG
1 TGCCACAGGCGGCACCAAAGATACCAG
* * * * * *
58047857 TGGCAGAGGCGGCACTAAAGGTGCCAT
1 TGCCACAGGCGGCACCAAAGATACCAG
58047884 TGCCACAGGCGGCACC
1 TGCCACAGGCGGCACC
58047900 CCCCATTACA
Statistics
Matches: 33, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.27, C:0.33, G:0.30, T:0.10
Consensus pattern (27 bp):
TGCCACAGGCGGCACCAAAGATACCAG
Found at i:58048876 original size:31 final size:31
Alignment explanation
Indices: 58048819--58048882 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
58048809 TCATTAGCCT
*
58048819 TTAAAATTTTTTAAAAATATTAATTAAGTCC
1 TTAAAATTTTTTAAAAATATTAATTAAATCC
* *
58048850 TTAAAATTTTTTTAAAAT-TCTCATTAAATCC
1 TTAAAATTTTTTAAAAATAT-TAATTAAATCC
58048881 TT
1 TT
58048883 TTATTTTAGA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 1 0.03
31 28 0.97
ACGTcount: A:0.41, C:0.09, G:0.02, T:0.48
Consensus pattern (31 bp):
TTAAAATTTTTTAAAAATATTAATTAAATCC
Found at i:58050084 original size:103 final size:103
Alignment explanation
Indices: 58049763--58050265 Score: 409
Period size: 109 Copynumber: 4.7 Consensus size: 103
58049753 TGTCGGCCAA
* *
58049763 TGACAGCCCAAAATATAAATTTTTTTTACATAAAGGTGGTGCCGGCCATTGGCAGGCCACCGCCA
1 TGACAGCCCAAAATGTAAATTTTTTTTACATAAAGGTGGTGCCGGCCATTGGCAGGCCACCACCA
* * * * *
58049828 ATTTTTTTTTTAATTTTTTCGTATACTAGTGTCGACCAAT
66 A-ATTTTTTTTAATTTTTTCGTATATTGGTG-CCAGCAAT
* ****** * * *
58049868 T-AAAGCCCAAAATGTAAAACAAAAAAAAATTACAAAAAGGTGGTGCCGGCCATTGGTAGGCCGC
1 TGACAGCCCAAAATGT-----AAATTTTTTTTACATAAAGGTGGTGCCGGCCATTGGCAGGCCAC
* *
58049932 TACCAAATTTTTTTTTAAAAATTTTTTCGTATATTGGTGCCAGCCAT
61 CACCAAA-TTTTTTTT---AATTTTTTCGTATATTGGTGCCAGCAAT
* * * *
58049979 TGACAGCCCAAAATGTAAATTTTTTTTACATAAAGGTGATGTCGGCTATTGCCAGGCCACCACCA
1 TGACAGCCCAAAATGTAAATTTTTTTTACATAAAGGTGGTGCCGGCCATTGGCAGGCCACCACCA
*
58050044 AATTTTTTTTAATTTTTTCGTATATTGGTGCCAGCTAT
66 AATTTTTTTTAATTTTTTCGTATATTGGTGCCAGCAAT
***** * *
58050082 TGACAGCCCAAAATGTAAAAAGAAAAAAAATTTACATAAAGGTAGTGCTGGCCATTGGCAGGCCA
1 TGACAGCCCAAAATGT------AAATTTTTTTTACATAAAGGTGGTGCCGGCCATTGGCAGGCCA
* * *
58050147 CCACCAAAAAAAGAAATGTTTTTAACATTTTTTCGTATATTGGTGCCGGCCAAT
60 CCACC--------AAATTTTTTTTA-ATTTTTTCGTATATTGGTGCCAG-CAAT
* * *
58050201 T-ACAGCCCAAAATATAAA-TTTTTTAACATAAAGGTGGTGCCGGTCATTGGCAGGCCACCACCA
1 TGACAGCCCAAAATGTAAATTTTTTTTACATAAAGGTGGTGCCGGCCATTGGCAGGCCACCACCA
58050264 AA
66 AA
58050266 AAAAATATTT
Statistics
Matches: 313, Mismatches: 59, Indels: 54
0.73 0.14 0.13
Matches are distributed among these distances:
103 46 0.15
104 12 0.04
105 1 0.00
106 8 0.03
107 37 0.12
109 84 0.27
111 42 0.13
112 34 0.11
117 10 0.03
118 35 0.11
119 4 0.01
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (103 bp):
TGACAGCCCAAAATGTAAATTTTTTTTACATAAAGGTGGTGCCGGCCATTGGCAGGCCACCACCA
AATTTTTTTTAATTTTTTCGTATATTGGTGCCAGCAAT
Found at i:58050110 original size:216 final size:217
Alignment explanation
Indices: 58049722--58050265 Score: 645
Period size: 216 Copynumber: 2.5 Consensus size: 217
58049712 CCAAAAAAAT
* *** * * * *
58049722 ATTTTTTTTAAAAAAAAATTTCGTATACTGATGTCGGCCAATGACAGCCCAAAATATAAATTTTT
1 ATTTTTTTTTAAAAATTTTTTCGTATATTGGTGCCGGCCATTGACAGCCCAAAATATAAATTTTT
* * *
58049787 TTTACATAAAGGTGGTGCCGGCCATTGGCAGGCCACCGCCAATTTTTTTTTTAATTTTTTCGTAT
66 TTTACATAAAGGTGGTGCCGGCTATTGGCAGGCCACCACCAA-ATTTTTTTTAATTTTTTCGTAT
* *
58049852 ACTAGTGTCGACCAATTAAAGCCCAAAATGTAAAACAAAAAAAAATTACAAAAAGGTGGTGCCGG
130 ACTAGTGTCCACCAATTAAAGCCCAAAATGTAAAACAAAAAAAAATTACAAAAAGGTAGTGCCGG
* * *
58049917 CCATTGGTAGGCCGCTACC-AA-
195 CCATTGGCAGGCCACCACCAAAG
* *
58049938 ATTTTTTTTTAAAAATTTTTTCGTATATTGGTGCCAGCCATTGACAGCCCAAAATGTAAATTTTT
1 ATTTTTTTTTAAAAATTTTTTCGTATATTGGTGCCGGCCATTGACAGCCCAAAATATAAATTTTT
* * *
58050003 TTTACATAAAGGTGATGTCGGCTATTGCCAGGCCACCACCAAATTTTTTTTAATTTTTTCGTATA
66 TTTACATAAAGGTGGTGCCGGCTATTGGCAGGCCACCACCAAATTTTTTTTAATTTTTTCGTATA
* * * * * * *
58050068 TTGGTG-CCAGCTATTGACAGCCCAAAATGTAAAA-AGAAAAAAAATTTACATAAAGGTAGTGCT
131 CTAGTGTCCACCAATT-AAAGCCCAAAATGTAAAACA-AAAAAAAA-TTACAAAAAGGTAGTGCC
58050131 GGCCATTGGCAGGCCACCACCAAAAAAAG
193 GGCCATTGGCAGGCCACCACC----AAAG
** * *
58050160 AAATGTTTTT-AACATTTTTTCGTATATTGGTGCCGGCCAATT-ACAGCCCAAAATATAAA-TTT
1 ATTTTTTTTTAAAAATTTTTTCGTATATTGGTGCCGGCC-ATTGACAGCCCAAAATATAAATTTT
*
58050222 TTTAACATAAAGGTGGTGCCGG-TCATTGGCAGGCCACCACCAAA
65 TTTTACATAAAGGTGGTGCCGGCT-ATTGGCAGGCCACCACCAAA
58050266 AAAAATATTT
Statistics
Matches: 279, Mismatches: 38, Indels: 18
0.83 0.11 0.05
Matches are distributed among these distances:
214 7 0.03
215 51 0.18
216 125 0.45
219 1 0.00
220 41 0.15
221 44 0.16
222 10 0.04
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.31
Consensus pattern (217 bp):
ATTTTTTTTTAAAAATTTTTTCGTATATTGGTGCCGGCCATTGACAGCCCAAAATATAAATTTTT
TTTACATAAAGGTGGTGCCGGCTATTGGCAGGCCACCACCAAATTTTTTTTAATTTTTTCGTATA
CTAGTGTCCACCAATTAAAGCCCAAAATGTAAAACAAAAAAAAATTACAAAAAGGTAGTGCCGGC
CATTGGCAGGCCACCACCAAAG
Found at i:58050676 original size:112 final size:111
Alignment explanation
Indices: 58050434--58051090 Score: 474
Period size: 112 Copynumber: 5.9 Consensus size: 111
58050424 ATAAAAAAAA
* * ** * *
58050434 TTACATAAAGGTGGTGTCGGCAATTGATAGGCTA-CA-AAAAAAACAATTTCATATTTTTTCGTA
1 TTACATAAAGGTGGTGCCGGCCATTGGCAGGCCACCACAAAAAAA-AATTT-AAATTTTTTCGTA
* * * * *
58050497 AACT-AGTGCCGGCAAATGACAACCTAAAAT-T-TAAAAAAAA-A----
64 TACTGA-TGCCGGCCAATGACAGCCCAAAATGTAAAAAAAAAATATTTT
* * **
58050538 TTACATAAAGGTAGTGCCGGCCATTGGCAAGCCACCATTAAAAAAAATTTAAATTTTTTCGTATA
1 TTACATAAAGGTGGTGCCGGCCATTGGCAGGCCACCACAAAAAAAAATTTAAATTTTTTCGTATA
* * *
58050603 CTGATGCCGGCCAATTACAGCTCAAAATGTAAAAAAAATAATTTTTT
66 CTGATGCCGGCCAATGACAGCCCAAAATGTAAAAAAAA-AATATTTT
* * * * *
58050650 TTACATAAAGGTGGTGCCGGCTATTGGTAGGCTACCACAAAAAAAAATTCAAATTTTTCCGTATA
1 TTACATAAAGGTGGTGCCGGCCATTGGCAGGCCACCACAAAAAAAAATTTAAATTTTTTCGTATA
* * * * *
58050715 CTGGTGTCGGTCAATGATAGCCCAAAATGTAAAAAAATATATATTTT
66 CTGATGCCGGCCAATGACAGCCCAAAATGTAAAAAAA-AAATATTTT
** * *
58050762 TTACATAAAGGTGGTGCTTGCCATTGGCAGGCTACCACCAAAAAAAAAATTTTTTTTTAAAAAAT
1 TTACATAAAGGTGGTGCCGGCCATTGGCAGGCCACCA-C-AAAAAAAAA------TTT--AAATT
* * * * **
58050827 TTTT-GTAAATTGGTACCGGGAAATGACAGCCCAAAATGT--AAAAAAAA-A---T
56 TTTTCGTATACTGATGCCGGCCAATGACAGCCCAAAATGTAAAAAAAAAATATTTT
* * ** **
58050876 TTACATAAAGGTGATGCCGGCCATTGGAAGGCCAAAATTAAAAAAAA-TTAAATTTTTTCGTATA
1 TTACATAAAGGTGGTGCCGGCCATTGGCAGGCCACCACAAAAAAAAATTTAAATTTTTTCGTATA
* * * **
58050940 CT-AGTGCCGGCCAATAACATCCCAAAATGTAAAAAAAAAAAAAATT
66 CTGA-TGCCGGCCAATGACAGCCCAAAATGTAAAAAAAAAATATTTT
* * * * *
58050986 TTACATAAAGATGGTGTCAGG-CATTGGTAGGCTACCACCAAAAAAAATTTTAAATTTTTTCGTA
1 TTACATAAAGGTGGTG-CCGGCCATTGGCAGGCCACCA-CAAAAAAAAATTTAAATTTTTTCGTA
* * * *
58051050 TACT-AGTGTCAGCCAATGACATCCAAAAATGTAAAAAAAAA
64 TACTGA-TGCCGGCCAATGACAGCCCAAAATGTAAAAAAAAA
58051091 TTACATAAAG
Statistics
Matches: 439, Mismatches: 81, Indels: 58
0.76 0.14 0.10
Matches are distributed among these distances:
103 8 0.02
104 87 0.20
105 11 0.03
106 20 0.05
107 3 0.01
110 27 0.06
111 10 0.02
112 186 0.42
113 2 0.00
114 40 0.09
117 1 0.00
118 2 0.00
119 5 0.01
120 2 0.00
121 28 0.06
122 7 0.02
ACGTcount: A:0.41, C:0.15, G:0.16, T:0.28
Consensus pattern (111 bp):
TTACATAAAGGTGGTGCCGGCCATTGGCAGGCCACCACAAAAAAAAATTTAAATTTTTTCGTATA
CTGATGCCGGCCAATGACAGCCCAAAATGTAAAAAAAAAATATTTT
Found at i:58051162 original size:48 final size:48
Alignment explanation
Indices: 58051082--58051187 Score: 135
Period size: 48 Copynumber: 2.2 Consensus size: 48
58051072 CCAAAAATGT
* **
58051082 AAAAAAAAA-TTACATAAAGATGGTGCTTGCCATTGGC-AAGCTAACAC
1 AAAAAAAAATTTACATAAAGATGATGCCGGCCATT-GCTAAGCTAACAC
* * *
58051129 AAAAAAAAATTTACATAAAGGTGATGCCGGCCATTGCTAGGCTACCAC
1 AAAAAAAAATTTACATAAAGATGATGCCGGCCATTGCTAAGCTAACAC
58051177 AAAAAAAAATT
1 AAAAAAAAATT
58051188 CAGATTTTTT
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
47 11 0.22
48 40 0.78
ACGTcount: A:0.46, C:0.17, G:0.16, T:0.21
Consensus pattern (48 bp):
AAAAAAAAATTTACATAAAGATGATGCCGGCCATTGCTAAGCTAACAC
Found at i:58051238 original size:105 final size:103
Alignment explanation
Indices: 58051129--58052805 Score: 641
Period size: 105 Copynumber: 16.0 Consensus size: 103
58051119 AAGCTAACAC
*
58051129 AAAAAAAAATTTACATAAAGGTGATGCCGGCCATT-GCTAGGCTACCACAAAAAAAAATTCAGAT
1 AAAAAAAAATTTACATAAAGGTGGTGCCGGCCATTGGC-AGGCTACCACAAAAAAAAATTCA-AT
* * *
58051193 TTTTTCGTATACTGGTGTCAGCCAATAACAACCCAAAATGT
64 TTTTTCGTATACTGGTG-CGGCCAATGACAGCCCAAAATGT
** * * ** *
58051234 AAAAAAAATATTTTTTTACATAAAGGTGGTGCCAACCATTGGCAGGCAATCA-TTAAAAAAATTA
1 AAAAAAAA-A----TTTACATAAAGGTGGTGCCGGCCATTGGCAGGCTACCACAAAAAAAAATTC
* * * * * *
58051298 AATTTTTTCGTATATTAGTGCCAGCCATTAACAGCCCAAAATAT
61 AATTTTTTCGTATACTGGTG-CGGCCAATGACAGCCCAAAATGT
* * * * * *
58051342 AAAAAAAAA-TTATATAAAGTTGGTGTCGGCCATTGGCAGGCTACAAAAAAAAAACAATTTTATA
1 AAAAAAAAATTTACATAAAGGTGGTGCCGGCCATTGGCAGGCTACCACAAAAAAA-AA-TTCA-A
* *** * *
58051406 TTTTTTTGTATACTGGTGCCGAATAATAACAGCCTAAAATGT
63 TTTTTTCGTATACTGGTG-CGGCCAATGACAGCCCAAAATGT
* * * *
58051448 GAAAAAAAAATTTACATAAAGTTGGTGTCAGCCATT-ACTAGG---CCACAAAAAAAATATT-AA
1 -AAAAAAAAATTTACATAAAGGTGGTGCCGGCCATTGGC-AGGCTACCACAAAAAAAA-ATTCAA
* ** *
58051508 TTTTTTTGTATACTGGTGCTGGCCAATGTTAGCCAAAAATGT
63 TTTTTTCGTATACTGGTGC-GGCCAATGACAGCCCAAAATGT
***** * * * ***** *
58051550 --AATTTTTTTTACATAAAGGTAGTGCCGGCCATTGGTAGGCTACCTC-AAATTTTTTTTAATTT
1 AAAAAAAAATTTACATAAAGGTGGTGCCGGCCATTGGCAGGCTACCACAAAAAAAAATTCAATTT
* * * * *
58051612 TTT-GTACACTAACGT-TGGCAAATGACAGTCCAAAATGT
66 TTTCGTATACT--GGTGCGGCCAATGACAGCCCAAAATGT
* * * * * ** * * * * *
58051650 ---AAAATATATATATAAATGTGGTGGCAACCATTGGCAGTCCATCATTAAAAAAAAATTTAAAT
1 AAAAAAAAATTTACATAAAGGTGGTGCCGGCCATTGGCAGGCTACCA-CAAAAAAAAA-TTCAAT
* * * * * *
58051712 TTTTTCGTATACTGTTGCCGACAAATGATAGCTCAAACTGT
64 TTTTTCGTATACTGGTG-CGGCCAATGACAGCCCAAAATGT
* * * * *
58051753 AAAAAAAAA-TTACATTAAGGTCGTGCAGGCCATTGGCAAGCTACCACCAAAAAAAAATTCAAAT
1 AAAAAAAAATTTACATAAAGGTGGTGCCGGCCATTGGCAGGCTACCA-CAAAAAAAAATTCAATT
* * *
58051817 TTTTCTGTATACTGGGGTTGGCCAATGACAACCCAAAATGT
65 TTTTC-GTATACTGGTG-CGGCCAATGACAGCCCAAAATGT
* *
58051858 AAAAAAAAA-TTACATAAAGGTGGTACCGGCCATTGGCAGGCCACCACCAAAAAAAAAATTCAAA
1 AAAAAAAAATTTACATAAAGGTGGTGCCGGCCATTGGCAGGCTACCA-C-AAAAAAAAATTC-AA
* * *
58051922 TTTTTTCGTTTACTGTTGCCGGCCAATGACAGCCAAAAATGT
63 TTTTTTCGTATACTGGTG-CGGCCAATGACAGCCCAAAATGT
* * * *** * * *****
58051964 AAAAAAATATTTTTTTTCCATAAATGTGGTGTTAGCCATTGTCAGGCCACCAACAAAATTTTTTT
1 AAAAAAA-A----ATTTACATAAAGGTGGTGCCGGCCATTGGCAGGCTACC-ACAAAAAAAAATT
* * * *
58052029 AAAAATTTTTTCGTATATTGGTGCCGGCAAATAACAGCCC-AAAT-T
60 --CAATTTTTTCGTATACTGGTG-CGGCCAATGACAGCCCAAAATGT
***** * * * *
58052074 ----TTTTTTTTACACAAAGGTAGTGCTGGCCATTGGCAGGCCACCACCAAAAAAAGAAATTTTT
1 AAAAAAAAATTTACATAAAGGTGGTGCCGGCCATTGGCAGGCTACCA-C-AAAAAA-AAA-----
* * *
58052135 TTAAAATTTTTTCGTATACTGGTGCCGACGAATGACAGCCCAAAATGT
58 TT-CAATTTTTTCGTATACTGGTG-CGGCCAATGACAGCCCAAAATGT
***** * *
58052183 --AATTTCTTTTACATAAAGGTGATGCCAGCCATT----GG------C--AAAAAAATT--ATTT
1 AAAAAAAAATTTACATAAAGGTGGTGCCGGCCATTGGCAGGCTACCACAAAAAAAAATTCAATTT
* * * *
58052232 TTTCGTATACTGGTGCTGGCGAATGACATCACAAAATAT
66 TTTCGTATACTGGTGC-GGCCAATGACAGCCCAAAATGT
****** *
58052271 AAACTTTTTTTTTACATAAAGGTGGTGCCGGCCATTGGCAGGCCACCACCAAAAGAAGAAATT--
1 AAA-AAAAAATTTACATAAAGGTGGTGCCGGCCATTGGCAGGCTACCA-CAAAA-AA-AAATTCA
** * * * * *
58052334 -TTTTTTAAAATTTTGTCGGGTGTCGGCTAATGACATCCCAAAATGT
62 ATTTTTT---CGTAT-ACTGGTG-CGGCCAATGACAGCCCAAAATGT
* * * ** * ****** *
58052380 AAAAAAAAAATTCCATAAAGGTGGTGCTGGCCATTGGTGGGCCACCACCAAATTTTTTTTAAATT
1 AAAAAAAAATTTACATAAAGGTGGTGCCGGCCATTGGCAGGCTACCA-CAAAAAAAAATTCAATT
* * * * *
58052445 TTTTCGTATACTGGTGCCAGCAAATGACAGACAAAAATAT
65 TTTTCGTATACTGGTG-CGGCCAATGACAGCCCAAAATGT
* * * * *
58052485 AAAAAAAAA-TTACATAAAGATGGTGCCGGCTATTTGCAGGCCACCAC-----CAAA--CAATTT
1 AAAAAAAAATTTACATAAAGGTGGTGCCGGCCATTGGCAGGCTACCACAAAAAAAAATTCAATTT
* * *
58052542 TTTCGTATACTGGTGCCGGCAAATGATAGCTCAAAATGT
66 TTTCGTATACTGGTG-CGGCCAATGACAGCCCAAAATGT
* * ***
58052581 AAAAAAAAAAATTACATAAAGGTGGTGCCGGCCATTGGCAGGCCACCACCAAAAATATTTTTTTT
1 -AAAAAAAAATTTACATAAAGGTGGTGCCGGCCATTGGCAGGCTACCA-CAAAAA-A---AAATT
* * * *
58052646 AAAATTGTTTCGTATACTGGTGTTGGCCAATGATAGCCCAAAATGT
60 -CAATTTTTTCGTATACTGGTG-CGGCCAATGACAGCCCAAAATGT
* * * *
58052692 AAAAAAAAATTTACATAAAGGTCGTGTCGGCCATTGGTAGGCCACCA-AAAAAATAAATTTTTTT
1 AAAAAAAAATTTACATAAAGGTGGTGCCGGCCATTGGCAGGCTACCACAAAAAA-AAA-----TT
* * * *
58052756 AAAATTTTTTTGTATACTAGTGCCGGCTAATGACAGCCCAAAATGT
60 -CAATTTTTTCGTATACTGGTG-CGGCCAATGACAGCCCAAAATGT
58052802 AAAA
1 AAAA
58052806 TTATTTTTCT
Statistics
Matches: 1188, Mismatches: 282, Indels: 199
0.71 0.17 0.12
Matches are distributed among these distances:
87 1 0.00
88 37 0.03
90 1 0.00
91 30 0.03
95 2 0.00
96 41 0.03
97 13 0.01
98 34 0.03
99 56 0.05
100 27 0.02
101 48 0.04
102 83 0.07
103 30 0.03
104 47 0.04
105 161 0.14
106 95 0.08
107 58 0.05
108 122 0.10
109 44 0.04
110 120 0.10
111 76 0.06
112 61 0.05
113 1 0.00
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.30
Consensus pattern (103 bp):
AAAAAAAAATTTACATAAAGGTGGTGCCGGCCATTGGCAGGCTACCACAAAAAAAAATTCAATTT
TTTCGTATACTGGTGCGGCCAATGACAGCCCAAAATGT
Found at i:58051273 original size:110 final size:108
Alignment explanation
Indices: 58051138--58051349 Score: 264
Period size: 108 Copynumber: 1.9 Consensus size: 108
58051128 CAAAAAAAAA
** * *
58051138 TTTACATAAAGGTGATGCCGGCCATT-GCTAGGCTACCACAAAAAAAAATTCAGATTTTTTCGTA
1 TTTACATAAAGGTGATGCCAACCATTGGC-AGGCAACCA-AAAAAAAAATT-AAATTTTTTCGTA
* * *
58051202 TACTGGTGTCAGCCAATAACAACCCAAAATGTAAAAAAAATATTTT
63 TACTAGTGCCAGCCAATAACAACCCAAAATATAAAAAAAATATTTT
* * ** *
58051248 TTTACATAAAGGTGGTGCCAACCATTGGCAGGCAATCATTAAAAAAATTAAATTTTTTCGTATAT
1 TTTACATAAAGGTGATGCCAACCATTGGCAGGCAACCAAAAAAAAAATTAAATTTTTTCGTATAC
* *
58051313 TAGTGCCAGCCATTAACAGCCCAAAATATAAAAAAAA
66 TAGTGCCAGCCAATAACAACCCAAAATATAAAAAAAA
58051350 ATTATATAAA
Statistics
Matches: 87, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
108 46 0.53
109 9 0.10
110 30 0.34
111 2 0.02
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (108 bp):
TTTACATAAAGGTGATGCCAACCATTGGCAGGCAACCAAAAAAAAAATTAAATTTTTTCGTATAC
TAGTGCCAGCCAATAACAACCCAAAATATAAAAAAAATATTTT
Found at i:58051294 original size:263 final size:258
Alignment explanation
Indices: 58050866--58051395 Score: 659
Period size: 263 Copynumber: 2.0 Consensus size: 258
58050856 CCCAAAATGT
* **
58050866 AAAAAAAAATTTACATAAAGGTGATGCCGGCCATTGGAAGGCCAAAATTAAAAAAAATTAAATTT
1 AAAAAAAAATTTACATAAAGGTGATGCCGGCCATTGCAAGGCCAAAACAAAAAAAAATTAAATTT
* *
58050931 TTTCGTATACTAGTGCCGGCCAATAACATCCCAAAATGTAAAAAAAAAAAAAATTTTACATAAAG
66 TTTCGTATACTAGTGCCAGCCAATAACAACCCAAAATGTAAAAAAAAAAAAAATTTTACATAAAG
* ** * * *
58050996 ATGGTGTCAGGCATTGGTAGGCTACCACCAAAAAAAATTTTAAATTTTTTCGTATACTAGTGTCA
131 ATGGTGCCAACCATTGGCAGGCAACCACC-AAAAAAA--TTAAATTTTTTCGTATACTAGTGCCA
* * * *
58051061 GCCAATGACATCCAAAAATGTAAAAAAAAATTACATAAAGATGGTG-CTTGCCATTGGCAAGCTA
193 GCCAATAACAGCCAAAAATATAAAAAAAAATTACATAAAGATGGTGTC-GGCCATTGGCAAGCT-
58051125 ACA
256 ACA
* * ** *
58051128 CAAAAAAAAATTTACATAAAGGTGATGCCGGCCATTGCTAGGCTACCACAAAAAAAAATTCAGAT
1 -AAAAAAAAATTTACATAAAGGTGATGCCGGCCATTGCAAGGCCAAAACAAAAAAAAATT-AAAT
* * * ***
58051193 TTTTTCGTATACTGGTGTCAGCCAATAACAACCCAAAATGT-AAAAAAAATATTTTTTTACATAA
64 TTTTTCGTATACTAGTGCCAGCCAATAACAACCCAAAATGTAAAAAAAAAAAAAATTTTACATAA
* * ** *
58051257 AGGTGGTGCCAACCATTGGCAGGCAATCATTAAAAAAATTAAATTTTTTCGTATATTAGTGCCAG
129 AGATGGTGCCAACCATTGGCAGGCAACCACCAAAAAAATTAAATTTTTTCGTATACTAGTGCCAG
* * * * *
58051322 CCATTAACAGCCCAAAATATAAAAAAAAATTATATAAAGTTGGTGTCGGCCATTGGCAGGCTACA
194 CCAATAACAGCCAAAAATATAAAAAAAAATTACATAAAGATGGTGTCGGCCATTGGCAAGCTACA
58051387 AAAAAAAAA
1 AAAAAAAAA
58051396 CAATTTTATA
Statistics
Matches: 229, Mismatches: 36, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
258 9 0.04
259 3 0.01
260 76 0.33
261 1 0.00
262 7 0.03
263 93 0.41
264 40 0.17
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.26
Consensus pattern (258 bp):
AAAAAAAAATTTACATAAAGGTGATGCCGGCCATTGCAAGGCCAAAACAAAAAAAAATTAAATTT
TTTCGTATACTAGTGCCAGCCAATAACAACCCAAAATGTAAAAAAAAAAAAAATTTTACATAAAG
ATGGTGCCAACCATTGGCAGGCAACCACCAAAAAAATTAAATTTTTTCGTATACTAGTGCCAGCC
AATAACAGCCAAAAATATAAAAAAAAATTACATAAAGATGGTGTCGGCCATTGGCAAGCTACA
Found at i:58051412 original size:108 final size:107
Alignment explanation
Indices: 58051299--58051501 Score: 252
Period size: 108 Copynumber: 1.9 Consensus size: 107
58051289 AAAAAATTAA
* * * *
58051299 ATTTTTTCGTATATTAGTGCCAGCCAT-TAACAGCCCAAAATAT-AAAAAAAAA-TTATATAAAG
1 ATTTTTTTGTATACTAGTGCC-G-AATATAACAGCCCAAAATATGAAAAAAAAATTTACATAAAG
* * *
58051361 TTGGTGTCGGCCATTGGC-AGGCTACAAAAAAAAAACAATTTTAT
64 TTGGTGTCAGCCATT-ACTAGGCCACAAAAAAAAAACAATTTTAT
* * *
58051405 ATTTTTTTGTATACTGGTGCCGAATAATAACAGCCTAAAATGTGAAAAAAAAATTTACATAAAGT
1 ATTTTTTTGTATACTAGTGCCGAAT-ATAACAGCCCAAAATATGAAAAAAAAATTTACATAAAGT
58051470 TGGTGTCAGCCATTACTAGGCCACAAAAAAAA
65 TGGTGTCAGCCATTACTAGGCCACAAAAAAAA
58051502 TATTAATTTT
Statistics
Matches: 82, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
104 2 0.02
105 1 0.01
106 32 0.39
107 10 0.12
108 37 0.45
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.29
Consensus pattern (107 bp):
ATTTTTTTGTATACTAGTGCCGAATATAACAGCCCAAAATATGAAAAAAAAATTTACATAAAGTT
GGTGTCAGCCATTACTAGGCCACAAAAAAAAAACAATTTTAT
Found at i:58052409 original size:310 final size:314
Alignment explanation
Indices: 58052080--58052805 Score: 745
Period size: 310 Copynumber: 2.3 Consensus size: 314
58052070 AATTTTTTTT
* *
58052080 TTACACAAAGGTAGTGCTGGCCATTGGCAGGCCACCACCAAAAAAAGAAATTTTTTTAAAATTTT
1 TTACATAAAGGTAGTGCTGGCCATTGGTAGGCCACCACCAAAAAAA-AAATTTTTTTAAAATTTT
* ****** *
58052145 TTCGTATACTGGTGCCGACGAATGACAGCCCAAAATGTAATTTCTTTTACATAAAGGTGATGCCA
65 TTCGTATACTGGTGCCGACAAATGACAGCCCAAAATGTAAAAAAAATTACATAAAGATGATGCCA
** * * *
58052210 GCCA-TT-GG-CA-AAAAAATTATTTTTTCGTATACTGGTGCTGGCGAATGACATCACAAAATAT
130 GCCATTTAGGCCACAAAAAACAATTTTTTCGTATACTGGTGCCGGCAAATGACAGCACAAAATAT
********
58052271 AAACTTTTTTTTTACATAAAGGTGGTGCCGGCCATTGGCAGGCCACCACCAAAAGAAGAAATTTT
195 AAAAAAAAAAATTACATAAAGGTGGTGCCGGCCATTGGCAGGCCACCACC--AA-AA-AAATTTT
* *
58052336 TTTTAAAA-T-TTT-G-T-CGGGTGTCGGCTAATGACATCCCAAAATGTAAAAAAAAAA
256 TTTTAAAATTGTTTCGATACGGGTGTCGGCCAATGACAGCCCAAAATGTAAAAAAAAAA
* * * *
58052390 TTCCATAAAGGTGGTGCTGGCCATTGGTGGGCCACCACC-------AAATTTTTTTTAAATTTTT
1 TTACATAAAGGTAGTGCTGGCCATTGGTAGGCCACCACCAAAAAAAAAATTTTTTTAAAATTTTT
* * * *
58052448 TCGTATACTGGTGCC-AGCAAATGACAGACAAAAATATAAAAAAAAATTACATAAAGATGGTGCC
66 TCGTATACTGGTGCCGA-CAAATGACAGCCCAAAATGT-AAAAAAAATTACATAAAGATGATGCC
* * ** * *
58052512 GGCTATTTGCAGGCCACCACCAAACAATTTTTTCGTATACTGGTGCCGGCAAATGATAGCTCAAA
129 AGCCATTT--AGGCCA-CAAAAAACAATTTTTTCGTATACTGGTGCCGGCAAATGACAGCACAAA
* *
58052577 ATGTAAAAAAAAAAATTACATAAAGGTGGTGCCGGCCATTGGCAGGCCACCACCAAAAATATTTT
191 ATATAAAAAAAAAAATTACATAAAGGTGGTGCCGGCCATTGGCAGGCCACCACCAAAAAAATTTT
* * * *
58052642 TTTTAAAATTGTTTCGTATACTGGTGTTGGCCAATGATAGCCCAAAATGTAAAAAAAAAT
256 TTTTAAAATTGTTTCG-ATACGGGTGTCGGCCAATGACAGCCCAAAATGTAAAAAAAAAA
* *
58052702 TTACATAAAGGTCGTG-TCGGCCATTGGTAGGCCACCA--AAAAAATAAATTTTTTTAAAATTTT
1 TTACATAAAGGTAGTGCT-GGCCATTGGTAGGCCACCACCAAAAAAAAAATTTTTTTAAAATTTT
* * * *
58052764 TTTGTATACTAGTGCCGGCTAATGACAGCCCAAAATGTAAAA
65 TTCGTATACTGGTGCCGACAAATGACAGCCCAAAATGTAAAA
58052806 TTATTTTTCT
Statistics
Matches: 336, Mismatches: 56, Indels: 42
0.77 0.13 0.10
Matches are distributed among these distances:
301 1 0.00
302 49 0.15
303 21 0.06
304 2 0.01
306 14 0.04
307 5 0.01
308 7 0.02
309 1 0.00
310 117 0.35
311 2 0.01
312 66 0.20
316 4 0.01
317 47 0.14
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (314 bp):
TTACATAAAGGTAGTGCTGGCCATTGGTAGGCCACCACCAAAAAAAAAATTTTTTTAAAATTTTT
TCGTATACTGGTGCCGACAAATGACAGCCCAAAATGTAAAAAAAATTACATAAAGATGATGCCAG
CCATTTAGGCCACAAAAAACAATTTTTTCGTATACTGGTGCCGGCAAATGACAGCACAAAATATA
AAAAAAAAAATTACATAAAGGTGGTGCCGGCCATTGGCAGGCCACCACCAAAAAAATTTTTTTTA
AAATTGTTTCGATACGGGTGTCGGCCAATGACAGCCCAAAATGTAAAAAAAAAA
Found at i:58052633 original size:98 final size:98
Alignment explanation
Indices: 58052440--58052745 Score: 307
Period size: 98 Copynumber: 3.0 Consensus size: 98
58052430 AATTTTTTTT
* * * *
58052440 AAATTTTTTCGTATACTGGTGCCAGCAAATGACAG-ACAAAA-ATATAAAAAAAAATTACATAAA
1 AAATTTTTTCGTATACTGGTGCCGGCAAATGATAGCACAAAATGTAAAAAAAAAAATTACATAAA
* * *
58052503 GATGGTGCCGGCTATTTGCAGGCCACCACCAAA
66 GGTGGTGCCGGCCATTGGCAGGCCACCACCAAA
* *
58052536 CAATTTTTTCGTATACTGGTGCCGGCAAATGATAGCTCAAAATGTAAAAAAAAAAATTACATAAA
1 AAATTTTTTCGTATACTGGTGCCGGCAAATGATAGCACAAAATGTAAAAAAAAAAATTACATAAA
58052601 GGTGGTGCCGGCCATTGGCAGGCCACCACCAAA
66 GGTGGTGCCGGCCATTGGCAGGCCACCACCAAA
** * *
58052634 AATATTTTTTTTAAAATTGTTTCGTATACTGGTGTTGGCCAATGATAGCCCAAAATGT-AAAAAA
1 AA-A-------T----TT-TTTCGTATACTGGTGCCGGCAAATGATAGCACAAAATGTAAAAAAA
* * * *
58052698 AAATTTACATAAAGGTCGTGTCGGCCATTGGTAGGCCACCA--AAA
53 AAAATTACATAAAGGTGGTGCCGGCCATTGGCAGGCCACCACCAAA
58052742 AAAT
1 AAAT
58052746 AAATTTTTTT
Statistics
Matches: 177, Mismatches: 18, Indels: 26
0.80 0.08 0.12
Matches are distributed among these distances:
96 32 0.18
97 5 0.03
98 51 0.29
99 1 0.01
100 1 0.01
106 1 0.01
107 1 0.01
108 5 0.03
110 45 0.25
111 35 0.20
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.26
Consensus pattern (98 bp):
AAATTTTTTCGTATACTGGTGCCGGCAAATGATAGCACAAAATGTAAAAAAAAAAATTACATAAA
GGTGGTGCCGGCCATTGGCAGGCCACCACCAAA
Found at i:58052662 original size:111 final size:111
Alignment explanation
Indices: 58052537--58052805 Score: 380
Period size: 110 Copynumber: 2.4 Consensus size: 111
58052527 ACCACCAAAC
*
58052537 AATTTTTTCGTATACTGGTGCCGGCAAATGATAGCTCAAAATGTAAAAAAAAAAATTACATAAAG
1 AATTTTTTCGTATACTGGTGCCGGCAAATGATAGCCCAAAATGTAAAAAAAAAAATTACATAAAG
* * *
58052602 GTGGTGCCGGCCATTGGCAGGCCACCACCAAAAAT-ATTTTTTTTAA
66 GTCGTGCCGGCCATTGGCAGGCCACCA-AAAAAATAAATTTTTTTAA
* ** * *
58052648 AATTGTTTCGTATACTGGTGTTGGCCAATGATAGCCCAAAATGT-AAAAAAAAATTTACATAAAG
1 AATTTTTTCGTATACTGGTGCCGGCAAATGATAGCCCAAAATGTAAAAAAAAAAATTACATAAAG
* *
58052712 GTCGTGTCGGCCATTGGTAGGCCACCAAAAAAATAAATTTTTTTAA
66 GTCGTGCCGGCCATTGGCAGGCCACCAAAAAAATAAATTTTTTTAA
* * * *
58052758 AATTTTTTTGTATACTAGTGCCGGCTAATGACAGCCCAAAATGTAAAA
1 AATTTTTTCGTATACTGGTGCCGGCAAATGATAGCCCAAAATGTAAAA
58052806 TTATTTTTCT
Statistics
Matches: 138, Mismatches: 18, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
109 6 0.04
110 90 0.65
111 42 0.30
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (111 bp):
AATTTTTTCGTATACTGGTGCCGGCAAATGATAGCCCAAAATGTAAAAAAAAAAATTACATAAAG
GTCGTGCCGGCCATTGGCAGGCCACCAAAAAAATAAATTTTTTTAA
Found at i:58058039 original size:20 final size:20
Alignment explanation
Indices: 58058014--58058061 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
58058004 ATAAACAGTT
58058014 GGTCAATGATAGTCAACATG
1 GGTCAATGATAGTCAACATG
* * *
58058034 GGTCAATAATGGTCAACATT
1 GGTCAATGATAGTCAACATG
58058054 GGTCAATG
1 GGTCAATG
58058062 GTTGGCCAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.27
Consensus pattern (20 bp):
GGTCAATGATAGTCAACATG
Found at i:58058590 original size:13 final size:13
Alignment explanation
Indices: 58058569--58058598 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
58058559 AGCCCAAACT
*
58058569 CAATTACCCAACC
1 CAATCACCCAACC
58058582 CAATCACCCAACC
1 CAATCACCCAACC
58058595 CAAT
1 CAAT
58058599 AAAACTAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.40, C:0.47, G:0.00, T:0.13
Consensus pattern (13 bp):
CAATCACCCAACC
Found at i:58058750 original size:9 final size:9
Alignment explanation
Indices: 58058738--58058796 Score: 64
Period size: 9 Copynumber: 6.4 Consensus size: 9
58058728 AAAATAAAAA
58058738 AATTCGGGT
1 AATTCGGGT
58058747 AATTCGGGT
1 AATTCGGGT
* **
58058756 ATTTTTTGGT
1 A-ATTCGGGT
*
58058766 AATTCGGTT
1 AATTCGGGT
*
58058775 AATTCGAGT
1 AATTCGGGT
58058784 AATTCGGGT
1 AATTCGGGT
58058793 AATT
1 AATT
58058797 TTTAACCAAA
Statistics
Matches: 39, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
9 33 0.85
10 6 0.15
ACGTcount: A:0.24, C:0.08, G:0.25, T:0.42
Consensus pattern (9 bp):
AATTCGGGT
Found at i:58061351 original size:19 final size:17
Alignment explanation
Indices: 58061270--58061364 Score: 50
Period size: 19 Copynumber: 5.2 Consensus size: 17
58061260 GACACCCTTC
*
58061270 TTTTATTTTTATTTTTTAA
1 TTTT-TTTTTAATTTTT-A
* *
58061289 CTTTTTTATTAACTTTTGTC
1 -TTTTTTTTTAA-TTTT-TA
* *
58061309 TTTTTCTTTAATTTTTT
1 TTTTTTTTTAATTTTTA
58061326 TTCTTTTTTTAAGTTTTATA
1 TT-TTTTTTTAA-TTTT-TA
*
58061346 TTTTTTCTT-A-TTTTA
1 TTTTTTTTTAATTTTTA
58061361 TTTT
1 TTTT
58061365 GTTTATTTTA
Statistics
Matches: 61, Mismatches: 9, Indels: 15
0.72 0.11 0.18
Matches are distributed among these distances:
15 6 0.10
16 3 0.05
17 3 0.05
18 13 0.21
19 24 0.39
20 11 0.18
21 1 0.02
ACGTcount: A:0.16, C:0.06, G:0.02, T:0.76
Consensus pattern (17 bp):
TTTTTTTTTAATTTTTA
Found at i:58061364 original size:14 final size:14
Alignment explanation
Indices: 58061353--58061386 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
58061343 ATATTTTTTC
58061353 TTATTTTATTTTGT
1 TTATTTTATTTTGT
*
58061367 TTATTTTATTTTAT
1 TTATTTTATTTTGT
58061381 TTATTT
1 TTATTT
58061387 ATTGTTATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (14 bp):
TTATTTTATTTTGT
Found at i:58061371 original size:24 final size:23
Alignment explanation
Indices: 58061322--58061386 Score: 62
Period size: 24 Copynumber: 2.8 Consensus size: 23
58061312 TTCTTTAATT
* *
58061322 TTTTTTCTTTTTTTAAGTTTTATA
1 TTTTTTCTTATTTT-ATTTTTATA
*
58061346 TTTTTTCTTATTTTATTTTGTTTA
1 TTTTTTCTTATTTTATTTT-TATA
58061370 TTTTATT-TTA-TTTATTT
1 TTTT-TTCTTATTTTATTT
58061387 ATTGTTATTA
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
23 11 0.31
24 23 0.64
25 2 0.06
ACGTcount: A:0.15, C:0.03, G:0.03, T:0.78
Consensus pattern (23 bp):
TTTTTTCTTATTTTATTTTTATA
Found at i:58061377 original size:19 final size:19
Alignment explanation
Indices: 58061353--58061395 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
58061343 ATATTTTTTC
*
58061353 TTATTTTATTTTGTTTATT-
1 TTATTTTA-TTTATTTATTG
58061372 TTATTTTATTTATTTATTG
1 TTATTTTATTTATTTATTG
58061391 TTATT
1 TTATT
58061396 AATTTTAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 9 0.41
19 13 0.59
ACGTcount: A:0.19, C:0.00, G:0.05, T:0.77
Consensus pattern (19 bp):
TTATTTTATTTATTTATTG
Found at i:58061394 original size:14 final size:13
Alignment explanation
Indices: 58061357--58061400 Score: 52
Period size: 14 Copynumber: 3.2 Consensus size: 13
58061347 TTTTTCTTAT
*
58061357 TTTATTTTGTTTA
1 TTTATTTTATTTA
58061370 TTTTATTTTATTTA
1 -TTTATTTTATTTA
*
58061384 TTTATTGTTATTAA
1 TTTATT-TTATTTA
58061398 TTT
1 TTT
58061401 TAAAAAATCT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
13 6 0.22
14 21 0.78
ACGTcount: A:0.20, C:0.00, G:0.05, T:0.75
Consensus pattern (13 bp):
TTTATTTTATTTA
Found at i:58061487 original size:32 final size:34
Alignment explanation
Indices: 58061441--58061511 Score: 110
Period size: 33 Copynumber: 2.1 Consensus size: 34
58061431 TTTATAATAT
58061441 ATATTTTTTAAAATTTTAAATATTA-TTTTTAAA
1 ATATTTTTTAAAATTTTAAATATTATTTTTTAAA
* *
58061474 TTATTTTTT-AAATTTTTAATATTATTTTTTAAA
1 ATATTTTTTAAAATTTTAAATATTATTTTTTAAA
58061507 ATATT
1 ATATT
58061512 AAATATATAT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
32 14 0.41
33 20 0.59
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (34 bp):
ATATTTTTTAAAATTTTAAATATTATTTTTTAAA
Found at i:58061508 original size:22 final size:21
Alignment explanation
Indices: 58061465--58061525 Score: 79
Period size: 22 Copynumber: 2.9 Consensus size: 21
58061455 TTTAAATATT
58061465 ATTTTTAA-ATTATTTTTTAA
1 ATTTTTAATATTATTTTTTAA
58061485 ATTTTTAATATTATTTTTTAAA
1 ATTTTTAATATTATTTTTT-AA
* *
58061507 ATATTAAATATATATTTTT
1 ATTTTTAATAT-TATTTTT
58061526 AATAATATAA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
20 8 0.22
21 10 0.28
22 11 0.31
23 7 0.19
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (21 bp):
ATTTTTAATATTATTTTTTAA
Found at i:58061526 original size:22 final size:21
Alignment explanation
Indices: 58061473--58061541 Score: 75
Period size: 22 Copynumber: 3.1 Consensus size: 21
58061463 TTATTTTTAA
* * *
58061473 ATTATTTTTTAAATTTTTAAT
1 ATTATTTTTAAAATATTAAAT
58061494 ATTATTTTTTAAAATATTAAAT
1 ATTA-TTTTTAAAATATTAAAT
*
58061516 ATATATTTTTAATAATATAAAAT
1 AT-TATTTTTAA-AATATTAAAT
58061539 ATT
1 ATT
58061542 TAAATATTTT
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
21 4 0.10
22 24 0.59
23 13 0.32
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (21 bp):
ATTATTTTTAAAATATTAAAT
Found at i:58061631 original size:21 final size:21
Alignment explanation
Indices: 58061592--58061632 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
58061582 TTTTTTAATA
*
58061592 TTTTAAATATTATTTAATTTG
1 TTTTAAATATTATTAAATTTG
58061613 TTTTATAATATT-TTAAATTT
1 TTTTA-AATATTATTAAATTT
58061633 TGATTTTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.63
Consensus pattern (21 bp):
TTTTAAATATTATTAAATTTG
Found at i:58061634 original size:22 final size:22
Alignment explanation
Indices: 58061591--58061654 Score: 60
Period size: 22 Copynumber: 2.8 Consensus size: 22
58061581 GTTTTTTAAT
*
58061591 ATTTTAAATATTATTTAATTTG
1 ATTTTAAATATTATTAAATTTG
58061613 -TTTTATAATATT-TTAAATTTTG
1 ATTTTA-AATATTATTAAA-TTTG
*
58061635 ATTTTTAAATTATTTTTAAA
1 A-TTTTAAA-TATTATTAAA
58061655 GATATTTGGC
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
21 9 0.26
22 10 0.29
23 2 0.06
24 9 0.26
25 5 0.14
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (22 bp):
ATTTTAAATATTATTAAATTTG
Found at i:58061968 original size:19 final size:20
Alignment explanation
Indices: 58061916--58061972 Score: 82
Period size: 19 Copynumber: 3.0 Consensus size: 20
58061906 TTTGAATTAA
**
58061916 TTAAAAATAAGAAATATTTG
1 TTAAAAATAAGATTTATTTG
58061936 TTAAAAA-AAGATTTATTTG
1 TTAAAAATAAGATTTATTTG
58061955 TTAAAAATAA-ATTTATTT
1 TTAAAAATAAGATTTATTT
58061973 AAAAATATAT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
19 25 0.74
20 9 0.26
ACGTcount: A:0.51, C:0.00, G:0.07, T:0.42
Consensus pattern (20 bp):
TTAAAAATAAGATTTATTTG
Found at i:58061989 original size:13 final size:13
Alignment explanation
Indices: 58061971--58062026 Score: 51
Period size: 13 Copynumber: 4.2 Consensus size: 13
58061961 ATAAATTTAT
*
58061971 TTAAAAATATATA
1 TTAAAAATATAAA
*
58061984 TTAAAAAGTAAAAA
1 TTAAAAA-TATAAA
*
58061998 TTAAAATTA-AAA
1 TTAAAAATATAAA
*
58062010 GTTAAAAATATATA
1 -TTAAAAATATAAA
58062024 TTA
1 TTA
58062027 TAAGATCACA
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
12 3 0.09
13 20 0.57
14 12 0.34
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (13 bp):
TTAAAAATATAAA
Found at i:58061997 original size:20 final size:21
Alignment explanation
Indices: 58061971--58062026 Score: 73
Period size: 20 Copynumber: 2.8 Consensus size: 21
58061961 ATAAATTTAT
58061971 TTAAAAATATATATTAAAAAG
1 TTAAAAATATATATTAAAAAG
*
58061992 -TAAAAAT-TAAAATT-AAAAG
1 TTAAAAATAT-ATATTAAAAAG
58062011 TTAAAAATATATATTA
1 TTAAAAATATATATTA
58062027 TAAGATCACA
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
19 6 0.21
20 22 0.76
21 1 0.03
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (21 bp):
TTAAAAATATATATTAAAAAG
Found at i:58062523 original size:41 final size:42
Alignment explanation
Indices: 58062470--58062552 Score: 132
Period size: 41 Copynumber: 2.0 Consensus size: 42
58062460 TTGGTTATAA
*
58062470 TTTTTTAATTTTAGGACACATTTATAAATTTATATA-TTAAT
1 TTTTTTAATTTTAGGACACATTCATAAATTTATATACTTAAT
* *
58062511 TTTTTTAATTTTAGTACACATTCATAAATTTATGTACTTAAT
1 TTTTTTAATTTTAGGACACATTCATAAATTTATATACTTAAT
58062553 ATATATTTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
41 33 0.87
42 5 0.13
ACGTcount: A:0.35, C:0.07, G:0.05, T:0.53
Consensus pattern (42 bp):
TTTTTTAATTTTAGGACACATTCATAAATTTATATACTTAAT
Found at i:58062699 original size:72 final size:72
Alignment explanation
Indices: 58062615--58062766 Score: 223
Period size: 72 Copynumber: 2.1 Consensus size: 72
58062605 GTTTAAAAAC
* * * ** * *
58062615 TTAAAGAAATTAAATATATTAAAAAATGTTATGTATAGCCAATTTTAAAATTTTAATATATTTAA
1 TTAAAAAAATTAAATATATTAAAAAATGTTAAGTATAACCAAAATTAAAATTATAATATATTCAA
58062680 TATATTT
66 TATATTT
*
58062687 TTAAAAAAATTAAATATATTAAAAAATTTTAAGTATAACCAAAATTAAAATTATAATATATTCAA
1 TTAAAAAAATTAAATATATTAAAAAATGTTAAGTATAACCAAAATTAAAATTATAATATATTCAA
58062752 TATATTT
66 TATATTT
*
58062759 TTTAAAAA
1 TTAAAAAA
58062767 TATATTTTAA
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
72 71 1.00
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.41
Consensus pattern (72 bp):
TTAAAAAAATTAAATATATTAAAAAATGTTAAGTATAACCAAAATTAAAATTATAATATATTCAA
TATATTT
Found at i:58063404 original size:21 final size:20
Alignment explanation
Indices: 58063362--58063404 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
58063352 CTCAACCTTT
*
58063362 TAATTTTAGTCTTCAATATA
1 TAATTTTAGTCTTAAATATA
58063382 TAATTTTATGT-TTAAATTATA
1 TAATTTTA-GTCTTAAA-TATA
58063403 TA
1 TA
58063405 GATAATTGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.37, C:0.05, G:0.05, T:0.53
Consensus pattern (20 bp):
TAATTTTAGTCTTAAATATA
Found at i:58065363 original size:18 final size:18
Alignment explanation
Indices: 58065340--58065374 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
58065330 TGGATTCCCC
*
58065340 TCTCTTCTCTCTCTCTTA
1 TCTCTTCCCTCTCTCTTA
58065358 TCTCTTCCCTCTCTCTT
1 TCTCTTCCCTCTCTCTT
58065375 CTTCTTTTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.03, C:0.43, G:0.00, T:0.54
Consensus pattern (18 bp):
TCTCTTCCCTCTCTCTTA
Found at i:58065859 original size:3 final size:3
Alignment explanation
Indices: 58065836--58065905 Score: 54
Period size: 3 Copynumber: 23.3 Consensus size: 3
58065826 AATATCCTTG
* * **
58065836 TTA TT- TTA -TA TTA TTA GTA TTA TTA GTA TTA CCA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
58065882 TGTA TTA GTA TATA TTT TTA TTA T
1 T-TA TTA TTA T-TA TTA TTA TTA T
58065906 GTACGTGTAT
Statistics
Matches: 51, Mismatches: 12, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
2 4 0.08
3 41 0.80
4 6 0.12
ACGTcount: A:0.31, C:0.03, G:0.06, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:58065902 original size:23 final size:22
Alignment explanation
Indices: 58065848--58065908 Score: 70
Period size: 23 Copynumber: 2.8 Consensus size: 22
58065838 ATTTTATATT
*
58065848 ATTAGTATTATTA-GTATTACC
1 ATTATTATTATTATGTATTACC
**
58065869 ATTATTATTATTATGTATTAGT
1 ATTATTATTATTATGTATTACC
*
58065891 ATATATTTTTATTATGTA
1 AT-TATTATTATTATGTA
58065909 CGTGTATACC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.35
22 8 0.24
23 14 0.41
ACGTcount: A:0.33, C:0.03, G:0.08, T:0.56
Consensus pattern (22 bp):
ATTATTATTATTATGTATTACC
Found at i:58065915 original size:23 final size:23
Alignment explanation
Indices: 58065871--58065916 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
58065861 GTATTACCAT
*
58065871 TATTATTATTATGTATTAGTATA
1 TATTATTATTATGTAGTAGTATA
*
58065894 TATTTTTATTATGTACGT-GTATA
1 TATTATTATTATGTA-GTAGTATA
58065917 CCTATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 19 0.95
24 1 0.05
ACGTcount: A:0.30, C:0.02, G:0.11, T:0.57
Consensus pattern (23 bp):
TATTATTATTATGTAGTAGTATA
Found at i:58078852 original size:72 final size:73
Alignment explanation
Indices: 58078775--58079497 Score: 792
Period size: 72 Copynumber: 9.7 Consensus size: 73
58078765 TAAATTGACT
** *
58078775 TCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTGT-TTTTTC-A
1 TCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTTTCAA
58078838 AAATCAAC
66 AAATCAAC
* * *
58078846 TCCATATTGCTAGAGGTGAGTTGAG-CTCAGGACAGGCTGA-GTAATTTCAATTTCTG-TTGTCA
1 T-CATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTTTC-
58078908 AAAAAATCAAC
64 -AAAAATCAAC
** * *
58078919 TCATATTGCGAGAAATGAGTTGAGCCTCAGGACATGGCTGAGGTAATTTCAATTATTTTGTTTTT
1 TCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA-CGCTGAGGTAATTTCAA-T-TTCTGTTTTT
58078984 C-AAAATCAAC
63 CAAAAATCAAC
* *
58078994 TCA-ATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG-TTGTCAA
1 TCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTTTC--
58079057 AAAAAATCAAC
64 -AAAAATCAAC
** *
58079068 TCATA-TGCGAGAAATGAGTTGAGCCTCAGGACACGCTGA-GTAATTTCAATTTTTGTTTTTC-A
1 TCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTTTCAA
58079130 AAATCAAC
66 AAATCAAC
* * *
58079138 TCATATTGCTAGAGGTGAGTTGAGGCCTCAGGACATGCTGAGGTAATTTCAATTTCTG-TTGTCA
1 TCATATTGCGAGAGGTGAGTTGA-GCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTTTC-
58079202 AAAAAAATCAAAC
64 --AAAAATC-AAC
* ** * *
58079215 TCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTT-TGCTTTTCAA
1 TCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTTTC-A
58079279 GAAAATCAAC
65 -AAAATCAAC
* * *
58079289 TCATATTGCGCAGAGGTGAGTTGAGCCTCAAGACGCGTTGACGGTATTTCAATTCCTGTTCCAAT
1 TCATATTGCG-AGAGGTGAGTTGAGCCTCAGGACACGCTGA-GG----T-AA----T-TT-CAAT
*
58079354 TTATGTTTTTCAAAAAT-AAC
53 TTCTGTTTTTCAAAAATCAAC
58079374 TCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTTTCAA
1 TCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTTTCAA
58079439 AAATCAAC
66 AAATCAAC
* * * *
58079447 TCATATTGCGAGA-GTGAGTTGAGCCTCCGGGCACGCCGACGGTATTTTCAA
1 TCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA-GGTAATTTCAA
58079498 ATCTCTACTT
Statistics
Matches: 562, Mismatches: 47, Indels: 84
0.81 0.07 0.12
Matches are distributed among these distances:
70 36 0.06
71 33 0.06
72 104 0.19
73 93 0.17
74 96 0.17
75 59 0.10
76 39 0.07
77 29 0.05
78 6 0.01
79 1 0.00
80 1 0.00
81 1 0.00
83 2 0.00
84 27 0.05
85 14 0.02
86 7 0.01
87 7 0.01
88 7 0.01
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.31
Consensus pattern (73 bp):
TCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTTTCAA
AAATCAAC
Found at i:58079050 original size:148 final size:147
Alignment explanation
Indices: 58078775--58079536 Score: 931
Period size: 148 Copynumber: 5.1 Consensus size: 147
58078765 TAAATTGACT
*
58078775 TCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTGT-TTTTTCAA
1 TCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTTGTTTTTCAA
*
58078839 AATCAACTCCATATTGCTAGAGGTGAGTTGAG-CTCAGGACAGGCTGA-GTAATTTCAATTTCTG
66 AATCAACT-CATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG
58078902 TTGTC-AAAAAAATCAAC
130 TTGTCAAAAAAAATCAAC
*
58078919 TCATATTGCGAGAAATGAGTTGAGCCTCAGGACATGGCTGAGGTAATTTCAATTATTTTGTTTTT
1 TCATATTGCGAGAAATGAGTTGAGCCTCAGGACA-CGCTGAGGTAATTTCAA-T-TTTTGTTTTT
58078984 CAAAATCAACTCA-ATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
63 CAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
58079048 TGTTGTCAAAAAAAATCAAC
128 TGTTGTCAAAAAAAATCAAC
58079068 TCATA-TGCGAGAAATGAGTTGAGCCTCAGGACACGCTGA-GTAATTTCAATTTTTGTTTTTCAA
1 TCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTTGTTTTTCAA
*
58079131 AATCAACTCATATTGCTAGAGGTGAGTTGAGGCCTCAGGACATGCTGAGGTAATTTCAATTTCTG
66 AATCAACTCATATTGCTAGAGGTGAGTTGA-GCCTCAGGACACGCTGAGGTAATTTCAATTTCTG
58079196 TTGTCAAAAAAAATCAAAC
130 TTGTCAAAAAAAATC-AAC
** * ** * *
58079215 TCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAA-TTTTGCTTTTCAA
1 TCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTTGTTTTTC--
* * * *
58079279 GAAAATCAACTCATATTGCGCAGAGGTGAGTTGAGCCTCAAGACGCGTTGACGGT-ATTTCAATT
64 -AAAATCAACTCATATTGC-TAGAGGTGAGTTGAGCCTCAGGACACGCTGA-GGTAATTTCAATT
* *
58079343 CCTGTT-CCAATTTATGTTTTTCAAAAAT-AAC
126 TCTGTTGTCAA---A--------AAAAATCAAC
** *
58079374 TCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTTTCAA
1 TCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTTGTTTTTC-A
* * * * * *
58079439 AAATCAACTCATATTGCGAGA-GTGAGTTGAGCCTCCGGGCACGCCGACGGTATTTTCAAATCTC
65 AAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGA-GGTAATTTC-AATTTC
*
58079503 TACTT-TCAAAAAAAAAATCAAC
128 T-GTTGTC--AAAAAAAATCAAC
58079525 TCATATT-CGAGA
1 TCATATTGCGAGA
58079537 GGTGGGTTGA
Statistics
Matches: 545, Mismatches: 38, Indels: 64
0.84 0.06 0.10
Matches are distributed among these distances:
144 57 0.10
145 36 0.07
146 79 0.14
147 32 0.06
148 104 0.19
149 26 0.05
150 14 0.03
151 55 0.10
152 16 0.03
153 1 0.00
156 24 0.04
157 7 0.01
158 24 0.04
159 53 0.10
160 9 0.02
161 8 0.01
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.31
Consensus pattern (147 bp):
TCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTTGTTTTTCAA
AATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
TGTCAAAAAAAATCAAC
Found at i:58079432 original size:84 final size:87
Alignment explanation
Indices: 58079263--58079432 Score: 242
Period size: 84 Copynumber: 2.0 Consensus size: 87
58079253 GAGGTATTTT
* *
58079263 CAATTTTGCTTTTCAAGAAAATCAACTCATATTGCGCAGAGGTGAGTTGAGCCTCAAGACGCGTT
1 CAATTTTGCTTTTCAAGAAAATCAACTCATATTGCGCAGAGGTGAGTTGAGCCTCAAGACACGCT
58079328 GACGGTATTTCAATTCCTGTTC
66 GACGGTATTTCAATTCCTGTTC
* *
58079350 CAATTTATGTTTTTC-A-AAAAT-AACTCATATTGCG-AGAGGTGAGTTGAGCCTCAGGACACGC
1 CAATTT-TGCTTTTCAAGAAAATCAACTCATATTGCGCAGAGGTGAGTTGAGCCTCAAGACACGC
*
58079411 TGA-GGTAATTTCAATTTCTGTT
65 TGACGGT-ATTTCAATTCCTGTT
58079433 TTTCAAAAAT
Statistics
Matches: 76, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
83 3 0.04
84 41 0.54
85 13 0.17
86 5 0.07
87 7 0.09
88 7 0.09
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.34
Consensus pattern (87 bp):
CAATTTTGCTTTTCAAGAAAATCAACTCATATTGCGCAGAGGTGAGTTGAGCCTCAAGACACGCT
GACGGTATTTCAATTCCTGTTC
Found at i:58079510 original size:73 final size:72
Alignment explanation
Indices: 58079361--58079514 Score: 204
Period size: 72 Copynumber: 2.1 Consensus size: 72
58079351 AATTTATGTT
*
58079361 TTTCAAAAATAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAAT
1 TTTCAAAAATAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCCGAGGTAATTTCAAT
* **
58079426 TTCTGTT
66 CTCTGAC
* * *
58079433 TTTCAAAAATCAACTCATATTGCGAGA-GTGAGTTGAGCCTCCGGGCACGCCGACGGTATTTTCA
1 TTTCAAAAAT-AACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCCGA-GGTAATTTC-
58079497 AATCTCT-AC
63 AATCTCTGAC
58079506 TTTCAAAAA
1 TTTCAAAAA
58079515 AAAAATCAAC
Statistics
Matches: 72, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
72 33 0.46
73 33 0.46
74 6 0.08
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (72 bp):
TTTCAAAAATAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCCGAGGTAATTTCAAT
CTCTGAC
Found at i:58083159 original size:30 final size:30
Alignment explanation
Indices: 58083115--58083191 Score: 91
Period size: 30 Copynumber: 2.6 Consensus size: 30
58083105 AGAGCAGTTT
* * *
58083115 ATATCACTCGGACATTGCCGATTCAAATTC
1 ATATCACCCAGACATAGCCGATTCAAATTC
* * * *
58083145 ATATCACCTAGACATAGGCGGTTCAAGTTC
1 ATATCACCCAGACATAGCCGATTCAAATTC
58083175 ATATCACCCAGACATAG
1 ATATCACCCAGACATAG
58083192 GCTGTTCGAG
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (30 bp):
ATATCACCCAGACATAGCCGATTCAAATTC
Found at i:58083192 original size:30 final size:30
Alignment explanation
Indices: 58083136--58083206 Score: 106
Period size: 30 Copynumber: 2.4 Consensus size: 30
58083126 ACATTGCCGA
* *
58083136 TTCAAATTCATATCACCTAGACATAGGCGG
1 TTCAAGTTCATATCACCCAGACATAGGCGG
*
58083166 TTCAAGTTCATATCACCCAGACATAGGCTG
1 TTCAAGTTCATATCACCCAGACATAGGCGG
*
58083196 TTCGAGTTCAT
1 TTCAAGTTCAT
58083207 TTCATCCAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.30
Consensus pattern (30 bp):
TTCAAGTTCATATCACCCAGACATAGGCGG
Done.